Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Hystricomorpha	ANCESTRAL SPECIES	9	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Hystricomorpha_a	ANCESTRAL SPECIES	7	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Hystricomorpha_b	ANCESTRAL SPECIES	13	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Degu	MODERN SPECIES	45	OSBPL8 (ENSODEG00000007618) #7	ENSODEG00000007367 #8	ZDHHC17 (ENSODEG00000010670) #9	CSRP2 (ENSODEG00000008449) #10	ENSODEG00000008575 #11	NAV3 (ENSODEG00000010398) #12	ENSODEG00000007970 #13	SYT1 (ENSODEG00000008387) #14	ENSODEG00000007440 #15	PAWR (ENSODEG00000008160) #16	ENSODEG00000019636 #17	PPP1R12A (ENSODEG00000009363) #18	OTOGL (ENSODEG00000007895) #19	PTPRQ (ENSODEG00000007761) #20	MYF6 (ENSODEG00000007305) #21	MYF5 (ENSODEG00000007510) #22	LIN7A (ENSODEG00000007832) #23	ENSODEG00000019454 #24	ACSS3 (ENSODEG00000007503) #25	PPFIA2 (ENSODEG00000007419) #26	CCDC59 (ENSODEG00000009427) #27	METTL25 (ENSODEG00000010203) #28	TMTC2 (ENSODEG00000007730) #29	ENSODEG00000009267 #30	ENSODEG00000009875 #31	SLC6A15 (ENSODEG00000007508) #32	ENSODEG00000007801 #33	ALX1 (ENSODEG00000008008) #34	RASSF9 (ENSODEG00000008024) #35	NTS (ENSODEG00000008426) #36	MGAT4C (ENSODEG00000011210) #37
Long-tailed chinchilla	MODERN SPECIES	112	ENSCLAG00000005333	BBS10 (ENSCLAG00000007902)	OSBPL8 (ENSCLAG00000010204) #7	ENSCLAG00000017859	ZDHHC17 (ENSCLAG00000011124) #9	CSRP2 (ENSCLAG00000008899) #10	E2F7 (ENSCLAG00000007164) #11	NAV3 (ENSCLAG00000012036) #12	ENSCLAG00000005685	SYT1 (ENSCLAG00000004862) #14	PAWR (ENSCLAG00000008196) #16	PPP1R12A (ENSCLAG00000006399) #18	OTOGL (ENSCLAG00000006526) #19	PTPRQ (ENSCLAG00000012232) #20	MYF6 (ENSCLAG00000013875) #21	MYF5 (ENSCLAG00000014410) #22	ENSCLAG00000013764 #23	ACSS3 (ENSCLAG00000005808) #25	PPFIA2 (ENSCLAG00000008120) #26	CCDC59 (ENSCLAG00000015050) #27	METTL25 (ENSCLAG00000014989) #28	TMTC2 (ENSCLAG00000008519) #29	SLC6A15 (ENSCLAG00000009597) #32	LRRIQ1 (ENSCLAG00000007042)	ALX1 (ENSCLAG00000007151) #34	RASSF9 (ENSCLAG00000007610) #35	NTS (ENSCLAG00000007844) #36	MGAT4C (ENSCLAG00000008726) #37	C12orf50 (ENSCLAG00000006991)	C12orf29 (ENSCLAG00000004653)	CEP290 (ENSCLAG00000006047)
Guinea pig	MODERN SPECIES	9	KRR1 (ENSCPOG00000014353)	PHLDA1 (ENSCPOG00000003245)	NAP1L1 (ENSCPOG00000019420)	BBS10 (ENSCPOG00000038158)	OSBPL8 (ENSCPOG00000001130) #7	ZDHHC17 (ENSCPOG00000012534) #9	CSRP2 (ENSCPOG00000031460) #10	E2F7 (ENSCPOG00000007375) #11	NAV3 (ENSCPOG00000015431) #12	SYT1 (ENSCPOG00000002054) #14	PAWR (ENSCPOG00000002469) #16	PPP1R12A (ENSCPOG00000004019) #18	OTOGL (ENSCPOG00000022231) #19	PTPRQ (ENSCPOG00000031105) #20	MYF6 (ENSCPOG00000030745) #21	MYF5 (ENSCPOG00000007766) #22	LIN7A (ENSCPOG00000001373) #23	ACSS3 (ENSCPOG00000003451) #25	PPFIA2 (ENSCPOG00000003459) #26	CCDC59 (ENSCPOG00000036718) #27	METTL25 (ENSCPOG00000011621) #28	TMTC2 (ENSCPOG00000005425) #29	SLC6A15 (ENSCPOG00000003103) #32	ENSCPOG00000022026 #33	ALX1 (ENSCPOG00000027131) #34	ENSCPOG00000040399	RASSF9 (ENSCPOG00000030989) #35	NTS (ENSCPOG00000006576) #36	MGAT4C (ENSCPOG00000013992) #37	C12orf50 (ENSCPOG00000012468)	C12orf29 (ENSCPOG00000039127)
Naked mole-rat female	MODERN SPECIES	8	ENSHGLG00000044176	ENSHGLG00000004489	ENSHGLG00000009233 #9	ENSHGLG00000008206 #10	E2F7 (ENSHGLG00000006491) #11	NAV3 (ENSHGLG00000012083) #12	ENSHGLG00000010015	ENSHGLG00000042592	SYT1 (ENSHGLG00000047548) #14	PAWR (ENSHGLG00000017940) #16	ENSHGLG00000036431	PPP1R12A (ENSHGLG00000014201) #18	OTOGL (ENSHGLG00000013295) #19	PTPRQ (ENSHGLG00000011762) #20	MYF6 (ENSHGLG00000003419) #21	MYF5 (ENSHGLG00000003654) #22	ENSHGLG00000003757 #23	ACSS3 (ENSHGLG00000004579) #25	PPFIA2 (ENSHGLG00000000429) #26	ENSHGLG00000036317	CCDC59 (ENSHGLG00000001711) #27	METTL25 (ENSHGLG00000038393) #28	TMTC2 (ENSHGLG00000000320) #29	ENSHGLG00000018244	ENSHGLG00000000758	ENSHGLG00000000965 #32	LRRIQ1 (ENSHGLG00000000302)	ALX1 (ENSHGLG00000000937) #34	ENSHGLG00000036253	RASSF9 (ENSHGLG00000034316) #35	NTS (ENSHGLG00000001320) #36
Sciuridae	ANCESTRAL SPECIES	14	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Marmotini	ANCESTRAL SPECIES	4	ENSGT00390000018775.ab	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00390000009130.a.a.b.h	ENSGT00920000149095.b
Marmotini_b	ANCESTRAL SPECIES	3	ENSGT00390000018775.ab	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00390000009130.a.a.b.h	ENSGT00920000149095.b
Arctic ground squirrel	MODERN SPECIES	89														PTPRQ (ENSUPAG00010013494) #20	MYF6 (ENSUPAG00010013483) #21	MYF5 (ENSUPAG00010013472) #22	LIN7A (ENSUPAG00010013458) #23	ACSS3 (ENSUPAG00010013440) #25	PPFIA2 (ENSUPAG00010013381) #26	CCDC59 (ENSUPAG00010013356) #27	METTL25 (ENSUPAG00010013340) #28	TMTC2 (ENSUPAG00010013331) #29	ENSUPAG00010013316	SLC6A15 (ENSUPAG00010013281) #32	TSPAN19 (ENSUPAG00010013269)	ENSUPAG00010013204 #33	ALX1 (ENSUPAG00010013178) #34	RASSF9 (ENSUPAG00010013163) #35	NTS (ENSUPAG00010013159) #36	MGAT4C (ENSUPAG00010013143) #37
Squirrel	MODERN SPECIES	298										SYT1 (ENSSTOG00000022817) #14	PAWR (ENSSTOG00000015765) #16	PPP1R12A (ENSSTOG00000011329) #18	OTOGL (ENSSTOG00000019523) #19	PTPRQ (ENSSTOG00000024058) #20	MYF6 (ENSSTOG00000015808) #21	MYF5 (ENSSTOG00000015810) #22	LIN7A (ENSSTOG00000015812) #23	ACSS3 (ENSSTOG00000013956) #25	PPFIA2 (ENSSTOG00000013971) #26
Alpin marmot	MODERN SPECIES	11	GLIPR1 (ENSMMMG00000002546)	KRR1 (ENSMMMG00000002493)	PHLDA1 (ENSMMMG00000002474)	ENSMMMG00000002289	BBS10 (ENSMMMG00000002273)	OSBPL8 (ENSMMMG00000002240) #7	ZDHHC17 (ENSMMMG00000002185) #9	ENSMMMG00000002164 #10	E2F7 (ENSMMMG00000002119) #11	NAV3 (ENSMMMG00000002035) #12	SYT1 (ENSMMMG00000001991) #14	PPP1R12A (ENSMMMG00000001751) #18	OTOGL (ENSMMMG00000001599) #19	PTPRQ (ENSMMMG00000001485) #20	MYF6 (ENSMMMG00000001463) #21	MYF5 (ENSMMMG00000001446) #22	LIN7A (ENSMMMG00000001429) #23	ACSS3 (ENSMMMG00000001391) #25	PPFIA2 (ENSMMMG00000001244) #26	CCDC59 (ENSMMMG00000001213) #27	METTL25 (ENSMMMG00000001158) #28	TMTC2 (ENSMMMG00000001120) #29	ENSMMMG00000001090	SLC6A15 (ENSMMMG00000001050) #32	TSPAN19 (ENSMMMG00000001031)	LRRIQ1 (ENSMMMG00000000979)	ALX1 (ENSMMMG00000000949) #34	NTS (ENSMMMG00000000924) #36	MGAT4C (ENSMMMG00000000872) #37	ENSMMMG00000000843	ENSMMMG00000000830
Eurasian red squirrel	MODERN SPECIES	14	NAP1L1 (ENSSVLG00005023160)	BBS10 (ENSSVLG00005023257)	ENSSVLG00005023266	OSBPL8 (ENSSVLG00005023307) #7	ZDHHC17 (ENSSVLG00005023480) #9	ENSSVLG00005023521 #10	E2F7 (ENSSVLG00005023615) #11	ENSSVLG00005023728	NAV3 (ENSSVLG00005023837) #12	SYT1 (ENSSVLG00005024299) #14	PAWR (ENSSVLG00005024360) #16	PPP1R12A (ENSSVLG00005024407) #18	OTOGL (ENSSVLG00005024601) #19	PTPRQ (ENSSVLG00005025041) #20	MYF6 (ENSSVLG00005025222) #21	MYF5 (ENSSVLG00005025239) #22	LIN7A (ENSSVLG00005025250) #23	BLVRB (ENSSVLG00005025266)	ACSS3 (ENSSVLG00005000239) #25	PPFIA2 (ENSSVLG00005001201) #26	CCDC59 (ENSSVLG00005002316) #27	METTL25 (ENSSVLG00005002343) #28	TMTC2 (ENSSVLG00005002395) #29	SLC6A15 (ENSSVLG00005002476) #32	TSPAN19 (ENSSVLG00005002560)	LRRIQ1 (ENSSVLG00005002609)	ALX1 (ENSSVLG00005002747) #34	RASSF9 (ENSSVLG00005002780) #35	NTS (ENSSVLG00005002800) #36	MGAT4C (ENSSVLG00005002827) #37	ENSSVLG00005002860