Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182959.a #22
Gnathostomata	DUPLICATION
Gnathostomata	ANCESTRAL SPECIES	283															ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34
Euteleostomi	ANCESTRAL SPECIES	16	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00660000096975	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000167105	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00500000044938
Sarcopterygii	ANCESTRAL SPECIES	8	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00660000096975	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00500000044938	ENSGT00730000111039.C	ENSGT00940000157538	ENSGT00390000018272
Tetrapoda	ANCESTRAL SPECIES	5	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00660000096975	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000167105	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Amniota	ANCESTRAL SPECIES	5	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Mammalia	ANCESTRAL SPECIES	8	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Theria	ANCESTRAL SPECIES	2	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Eutheria	ANCESTRAL SPECIES	1	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Boreoeutheria	ANCESTRAL SPECIES	6	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Euarchontoglires	ANCESTRAL SPECIES	6	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Glires	ANCESTRAL SPECIES	4	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Rodentia	ANCESTRAL SPECIES	5	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Hystricomorpha	ANCESTRAL SPECIES	9	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Hystricomorpha_a	ANCESTRAL SPECIES	7	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Hystricomorpha_b	ANCESTRAL SPECIES	13	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Degu	MODERN SPECIES	45	OSBPL8 (ENSODEG00000007618) #7	ENSODEG00000007367 #8	ZDHHC17 (ENSODEG00000010670) #9	CSRP2 (ENSODEG00000008449) #10	ENSODEG00000008575 #11	NAV3 (ENSODEG00000010398) #12	ENSODEG00000007970 #13	SYT1 (ENSODEG00000008387) #14	ENSODEG00000007440 #15	PAWR (ENSODEG00000008160) #16	ENSODEG00000019636 #17	PPP1R12A (ENSODEG00000009363) #18	OTOGL (ENSODEG00000007895) #19	PTPRQ (ENSODEG00000007761) #20	MYF6 (ENSODEG00000007305) #21	MYF5 (ENSODEG00000007510) #22	LIN7A (ENSODEG00000007832) #23	ENSODEG00000019454 #24	ACSS3 (ENSODEG00000007503) #25	PPFIA2 (ENSODEG00000007419) #26	CCDC59 (ENSODEG00000009427) #27	METTL25 (ENSODEG00000010203) #28	TMTC2 (ENSODEG00000007730) #29	ENSODEG00000009267 #30	ENSODEG00000009875 #31	SLC6A15 (ENSODEG00000007508) #32	ENSODEG00000007801 #33	ALX1 (ENSODEG00000008008) #34	RASSF9 (ENSODEG00000008024) #35	NTS (ENSODEG00000008426) #36	MGAT4C (ENSODEG00000011210) #37
Long-tailed chinchilla	MODERN SPECIES	112	ENSCLAG00000005333	BBS10 (ENSCLAG00000007902)	OSBPL8 (ENSCLAG00000010204) #7	ENSCLAG00000017859	ZDHHC17 (ENSCLAG00000011124) #9	CSRP2 (ENSCLAG00000008899) #10	E2F7 (ENSCLAG00000007164) #11	NAV3 (ENSCLAG00000012036) #12	ENSCLAG00000005685	SYT1 (ENSCLAG00000004862) #14	PAWR (ENSCLAG00000008196) #16	PPP1R12A (ENSCLAG00000006399) #18	OTOGL (ENSCLAG00000006526) #19	PTPRQ (ENSCLAG00000012232) #20	MYF6 (ENSCLAG00000013875) #21	MYF5 (ENSCLAG00000014410) #22	ENSCLAG00000013764 #23	ACSS3 (ENSCLAG00000005808) #25	PPFIA2 (ENSCLAG00000008120) #26	CCDC59 (ENSCLAG00000015050) #27	METTL25 (ENSCLAG00000014989) #28	TMTC2 (ENSCLAG00000008519) #29	SLC6A15 (ENSCLAG00000009597) #32	LRRIQ1 (ENSCLAG00000007042)	ALX1 (ENSCLAG00000007151) #34	RASSF9 (ENSCLAG00000007610) #35	NTS (ENSCLAG00000007844) #36	MGAT4C (ENSCLAG00000008726) #37	C12orf50 (ENSCLAG00000006991)	C12orf29 (ENSCLAG00000004653)	CEP290 (ENSCLAG00000006047)
Guinea pig	MODERN SPECIES	9	KRR1 (ENSCPOG00000014353)	PHLDA1 (ENSCPOG00000003245)	NAP1L1 (ENSCPOG00000019420)	BBS10 (ENSCPOG00000038158)	OSBPL8 (ENSCPOG00000001130) #7	ZDHHC17 (ENSCPOG00000012534) #9	CSRP2 (ENSCPOG00000031460) #10	E2F7 (ENSCPOG00000007375) #11	NAV3 (ENSCPOG00000015431) #12	SYT1 (ENSCPOG00000002054) #14	PAWR (ENSCPOG00000002469) #16	PPP1R12A (ENSCPOG00000004019) #18	OTOGL (ENSCPOG00000022231) #19	PTPRQ (ENSCPOG00000031105) #20	MYF6 (ENSCPOG00000030745) #21	MYF5 (ENSCPOG00000007766) #22	LIN7A (ENSCPOG00000001373) #23	ACSS3 (ENSCPOG00000003451) #25	PPFIA2 (ENSCPOG00000003459) #26	CCDC59 (ENSCPOG00000036718) #27	METTL25 (ENSCPOG00000011621) #28	TMTC2 (ENSCPOG00000005425) #29	SLC6A15 (ENSCPOG00000003103) #32	ENSCPOG00000022026 #33	ALX1 (ENSCPOG00000027131) #34	ENSCPOG00000040399	RASSF9 (ENSCPOG00000030989) #35	NTS (ENSCPOG00000006576) #36	MGAT4C (ENSCPOG00000013992) #37	C12orf50 (ENSCPOG00000012468)	C12orf29 (ENSCPOG00000039127)
Naked mole-rat female	MODERN SPECIES	8	ENSHGLG00000044176	ENSHGLG00000004489	ENSHGLG00000009233 #9	ENSHGLG00000008206 #10	E2F7 (ENSHGLG00000006491) #11	NAV3 (ENSHGLG00000012083) #12	ENSHGLG00000010015	ENSHGLG00000042592	SYT1 (ENSHGLG00000047548) #14	PAWR (ENSHGLG00000017940) #16	ENSHGLG00000036431	PPP1R12A (ENSHGLG00000014201) #18	OTOGL (ENSHGLG00000013295) #19	PTPRQ (ENSHGLG00000011762) #20	MYF6 (ENSHGLG00000003419) #21	MYF5 (ENSHGLG00000003654) #22	ENSHGLG00000003757 #23	ACSS3 (ENSHGLG00000004579) #25	PPFIA2 (ENSHGLG00000000429) #26	ENSHGLG00000036317	CCDC59 (ENSHGLG00000001711) #27	METTL25 (ENSHGLG00000038393) #28	TMTC2 (ENSHGLG00000000320) #29	ENSHGLG00000018244	ENSHGLG00000000758	ENSHGLG00000000965 #32	LRRIQ1 (ENSHGLG00000000302)	ALX1 (ENSHGLG00000000937) #34	ENSHGLG00000036253	RASSF9 (ENSHGLG00000034316) #35	NTS (ENSHGLG00000001320) #36
Sciuridae	ANCESTRAL SPECIES	14	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Marmotini	ANCESTRAL SPECIES	4	ENSGT00390000018775.ab	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00390000009130.a.a.b.h	ENSGT00920000149095.b
Marmotini_b	ANCESTRAL SPECIES	3	ENSGT00390000018775.ab	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00390000009130.a.a.b.h	ENSGT00920000149095.b
Arctic ground squirrel	MODERN SPECIES	89														PTPRQ (ENSUPAG00010013494) #20	MYF6 (ENSUPAG00010013483) #21	MYF5 (ENSUPAG00010013472) #22	LIN7A (ENSUPAG00010013458) #23	ACSS3 (ENSUPAG00010013440) #25	PPFIA2 (ENSUPAG00010013381) #26	CCDC59 (ENSUPAG00010013356) #27	METTL25 (ENSUPAG00010013340) #28	TMTC2 (ENSUPAG00010013331) #29	ENSUPAG00010013316	SLC6A15 (ENSUPAG00010013281) #32	TSPAN19 (ENSUPAG00010013269)	ENSUPAG00010013204 #33	ALX1 (ENSUPAG00010013178) #34	RASSF9 (ENSUPAG00010013163) #35	NTS (ENSUPAG00010013159) #36	MGAT4C (ENSUPAG00010013143) #37
Squirrel	MODERN SPECIES	298										SYT1 (ENSSTOG00000022817) #14	PAWR (ENSSTOG00000015765) #16	PPP1R12A (ENSSTOG00000011329) #18	OTOGL (ENSSTOG00000019523) #19	PTPRQ (ENSSTOG00000024058) #20	MYF6 (ENSSTOG00000015808) #21	MYF5 (ENSSTOG00000015810) #22	LIN7A (ENSSTOG00000015812) #23	ACSS3 (ENSSTOG00000013956) #25	PPFIA2 (ENSSTOG00000013971) #26
Alpin marmot	MODERN SPECIES	11	GLIPR1 (ENSMMMG00000002546)	KRR1 (ENSMMMG00000002493)	PHLDA1 (ENSMMMG00000002474)	ENSMMMG00000002289	BBS10 (ENSMMMG00000002273)	OSBPL8 (ENSMMMG00000002240) #7	ZDHHC17 (ENSMMMG00000002185) #9	ENSMMMG00000002164 #10	E2F7 (ENSMMMG00000002119) #11	NAV3 (ENSMMMG00000002035) #12	SYT1 (ENSMMMG00000001991) #14	PPP1R12A (ENSMMMG00000001751) #18	OTOGL (ENSMMMG00000001599) #19	PTPRQ (ENSMMMG00000001485) #20	MYF6 (ENSMMMG00000001463) #21	MYF5 (ENSMMMG00000001446) #22	LIN7A (ENSMMMG00000001429) #23	ACSS3 (ENSMMMG00000001391) #25	PPFIA2 (ENSMMMG00000001244) #26	CCDC59 (ENSMMMG00000001213) #27	METTL25 (ENSMMMG00000001158) #28	TMTC2 (ENSMMMG00000001120) #29	ENSMMMG00000001090	SLC6A15 (ENSMMMG00000001050) #32	TSPAN19 (ENSMMMG00000001031)	LRRIQ1 (ENSMMMG00000000979)	ALX1 (ENSMMMG00000000949) #34	NTS (ENSMMMG00000000924) #36	MGAT4C (ENSMMMG00000000872) #37	ENSMMMG00000000843	ENSMMMG00000000830
Eurasian red squirrel	MODERN SPECIES	14	NAP1L1 (ENSSVLG00005023160)	BBS10 (ENSSVLG00005023257)	ENSSVLG00005023266	OSBPL8 (ENSSVLG00005023307) #7	ZDHHC17 (ENSSVLG00005023480) #9	ENSSVLG00005023521 #10	E2F7 (ENSSVLG00005023615) #11	ENSSVLG00005023728	NAV3 (ENSSVLG00005023837) #12	SYT1 (ENSSVLG00005024299) #14	PAWR (ENSSVLG00005024360) #16	PPP1R12A (ENSSVLG00005024407) #18	OTOGL (ENSSVLG00005024601) #19	PTPRQ (ENSSVLG00005025041) #20	MYF6 (ENSSVLG00005025222) #21	MYF5 (ENSSVLG00005025239) #22	LIN7A (ENSSVLG00005025250) #23	BLVRB (ENSSVLG00005025266)	ACSS3 (ENSSVLG00005000239) #25	PPFIA2 (ENSSVLG00005001201) #26	CCDC59 (ENSSVLG00005002316) #27	METTL25 (ENSSVLG00005002343) #28	TMTC2 (ENSSVLG00005002395) #29	SLC6A15 (ENSSVLG00005002476) #32	TSPAN19 (ENSSVLG00005002560)	LRRIQ1 (ENSSVLG00005002609)	ALX1 (ENSSVLG00005002747) #34	RASSF9 (ENSSVLG00005002780) #35	NTS (ENSSVLG00005002800) #36	MGAT4C (ENSSVLG00005002827) #37	ENSSVLG00005002860
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Myomorpha	ANCESTRAL SPECIES	2	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Muroidea	ANCESTRAL SPECIES	5	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Muroidea_A	ANCESTRAL SPECIES	22	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Cricetidae	ANCESTRAL SPECIES	21	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Cricetinae	ANCESTRAL SPECIES	22	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Chinese hamster chok1gshd	MODERN SPECIES	83	Osbpl8 (ENSCGRG00001021286) #7	Zdhhc17 (ENSCGRG00001007660) #9	Csrp2 (ENSCGRG00001000844) #10	E2f7 (ENSCGRG00001006568) #11	ENSCGRG00001011762	Nav3 (ENSCGRG00001022037) #12	Brcc3dc (ENSCGRG00001009076)	Syt1 (ENSCGRG00001000069) #14	ENSCGRG00001010398	ENSCGRG00001009057	Pawr (ENSCGRG00001011044) #16	Ppp1r12a (ENSCGRG00001017263) #18	Otogl (ENSCGRG00001018530) #19	Ptprq (ENSCGRG00001017128) #20	Myf6 (ENSCGRG00001006341) #21	Myf5 (ENSCGRG00001009370) #22	Lin7a (ENSCGRG00001003313) #23	Acss3 (ENSCGRG00001009906) #25	Ppfia2 (ENSCGRG00001020914) #26	ENSCGRG00001016413 #28	Syn3 (ENSCGRG00001000589)	Timp3 (ENSCGRG00001016875)	Fbxo7 (ENSCGRG00001019488)	Bpifc (ENSCGRG00001023438)	Rtcb (ENSCGRG00001011173)	Ascl4 (ENSCGRG00001008661)	ENSCGRG00001015102	Pwp1 (ENSCGRG00001019668)	Abtb3 (ENSCGRG00001021266)	Cry1 (ENSCGRG00001001431)	Mterf2 (ENSCGRG00001003171)
Golden Hamster	MODERN SPECIES	628	ENSMAUG00000021584	Nap1l1 (ENSMAUG00000016700)	Bbs10 (ENSMAUG00000018240)	Osbpl8 (ENSMAUG00000022092) #7	Zdhhc17 (ENSMAUG00000021687) #9	Csrp2 (ENSMAUG00000018727) #10	E2f7 (ENSMAUG00000010792) #11	Nav3 (ENSMAUG00000012505) #12	ENSMAUG00000014224	Syt1 (ENSMAUG00000012263) #14	ENSMAUG00000008984	Ppp1r12a (ENSMAUG00000021712) #18	Otogl (ENSMAUG00000009930) #19	Ptprq (ENSMAUG00000014282) #20	Myf6 (ENSMAUG00000019329) #21	Myf5 (ENSMAUG00000000933) #22	Lin7a (ENSMAUG00000007088) #23	Acss3 (ENSMAUG00000014131) #25	ENSMAUG00000019031	Ppfia2 (ENSMAUG00000021622) #26	Ccdc59 (ENSMAUG00000017516) #27	Mettl25 (ENSMAUG00000020950) #28	Tmtc2 (ENSMAUG00000015691) #29	Slc6a15 (ENSMAUG00000018360) #32	ENSMAUG00000001372 #33	Alx1 (ENSMAUG00000015563) #34	Rassf9 (ENSMAUG00000012420) #35	Nts (ENSMAUG00000013146) #36	ENSMAUG00000004735 #37	ENSMAUG00000008756	4930430F08Rik (ENSMAUG00000013438)
Cricetidae_B	ANCESTRAL SPECIES	29	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Prairie vole	MODERN SPECIES	10	Phlda1 (ENSMOCG00000021889)	Nap1l1 (ENSMOCG00000012136)	Bbs10 (ENSMOCG00000020010)	Osbpl8 (ENSMOCG00000016633) #7	Zdhhc17 (ENSMOCG00000002407) #9	Csrp2 (ENSMOCG00000007217) #10	E2f7 (ENSMOCG00000021130) #11	Nav3 (ENSMOCG00000018391) #12	ENSMOCG00000020523	Syt1 (ENSMOCG00000012503) #14	Pawr (ENSMOCG00000019570) #16	Ppp1r12a (ENSMOCG00000018418) #18	Otogl (ENSMOCG00000018409) #19	Ptprq (ENSMOCG00000017842) #20	Myf6 (ENSMOCG00000015833) #21	Myf5 (ENSMOCG00000017847) #22	Lin7a (ENSMOCG00000021369) #23	Acss3 (ENSMOCG00000012086) #25	Ppfia2 (ENSMOCG00000007873) #26	Ccdc59 (ENSMOCG00000006690) #27	Mettl25 (ENSMOCG00000018000) #28	Tmtc2 (ENSMOCG00000012479) #29	ENSMOCG00000016887	ENSMOCG00000010194	Slc6a15 (ENSMOCG00000002838) #32	ENSMOCG00000019991 #33	Alx1 (ENSMOCG00000007046) #34	Rassf9 (ENSMOCG00000010972) #35	Nts (ENSMOCG00000000690) #36	Mgat4c (ENSMOCG00000012409) #37	1700017N19Rik (ENSMOCG00000017688)
Northern American deer mouse	MODERN SPECIES	9	Phlda1 (ENSPEMG00000020277)	Nap1l1 (ENSPEMG00000000646)	Bbs10 (ENSPEMG00000031116)	Osbpl8 (ENSPEMG00000008934) #7	Zdhhc17 (ENSPEMG00000011257) #9	Csrp2 (ENSPEMG00000012653) #10	E2f7 (ENSPEMG00000013555) #11	Nav3 (ENSPEMG00000003783) #12	Brcc3dc (ENSPEMG00000012864)	Syt1 (ENSPEMG00000011853) #14	Pawr (ENSPEMG00000031267) #16	Ppp1r12a (ENSPEMG00000011824) #18	Otogl (ENSPEMG00000005921) #19	Ptprq (ENSPEMG00000019976) #20	Myf6 (ENSPEMG00000019751) #21	Myf5 (ENSPEMG00000018818) #22	Lin7a (ENSPEMG00000018576) #23	Acss3 (ENSPEMG00000017696) #25	Ppfia2 (ENSPEMG00000015993) #26	Ccdc59 (ENSPEMG00000031144) #27	Mettl25 (ENSPEMG00000013112) #28	Tmtc2 (ENSPEMG00000020725) #29	Mgat4c (ENSPEMG00000019377) #37	Nts (ENSPEMG00000024525) #36	Rassf9 (ENSPEMG00000012691) #35	Alx1 (ENSPEMG00000011110) #34	Lrriq1 (ENSPEMG00000012353)	Slc6a15 (ENSPEMG00000010154) #32	1700017N19Rik (ENSPEMG00000010447)	4930430F08Rik (ENSPEMG00000016254)	Cep290 (ENSPEMG00000008348)
Murinae	ANCESTRAL SPECIES	22	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Mus	ANCESTRAL SPECIES	23	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Mus_A	ANCESTRAL SPECIES	11	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Mus_B	ANCESTRAL SPECIES	10	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Mouse	MODERN SPECIES	1	Phlda1 (ENSMUSG00000020205)	Nap1l1 (ENSMUSG00000058799)	Bbs10 (ENSMUSG00000035759)	Osbpl8 (ENSMUSG00000020189) #7	Zdhhc17 (ENSMUSG00000035798) #9	Csrp2 (ENSMUSG00000020186) #10	E2f7 (ENSMUSG00000020185) #11	Nav3 (ENSMUSG00000020181) #12	Brcc3dc (ENSMUSG00000112039)	Syt1 (ENSMUSG00000035864) #14	Pawr (ENSMUSG00000035873) #16	Ppp1r12a (ENSMUSG00000019907) #18	Otogl (ENSMUSG00000091455) #19	Ptprq (ENSMUSG00000035916) #20	Myf6 (ENSMUSG00000035923) #21	Myf5 (ENSMUSG00000000435) #22	Lin7a (ENSMUSG00000019906) #23	Acss3 (ENSMUSG00000035948) #25	Ppfia2 (ENSMUSG00000053825) #26	Ccdc59 (ENSMUSG00000019897) #27	Mettl25 (ENSMUSG00000036009) #28	Tmtc2 (ENSMUSG00000036019) #29	Gm4340 (ENSMUSG00000090854)	Gm20765 (ENSMUSG00000095022)	Gm21312 (ENSMUSG00000094144)	Gm21304 (ENSMUSG00000097550)	Gm8764 (ENSMUSG00000097878)	Gm6763 (ENSMUSG00000097427)	Gm21293 (ENSMUSG00000091779)	Slc6a15 (ENSMUSG00000019894) #32	Lrriq1 (ENSMUSG00000019892)
Mus_C	ANCESTRAL SPECIES	7	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
spretus	MODERN SPECIES	1	Krr1 (MGP_SPRETEiJ_G0016622)	Phlda1 (MGP_SPRETEiJ_G0016621)	Nap1l1 (MGP_SPRETEiJ_G0016620)	Bbs10 (MGP_SPRETEiJ_G0016619)	Osbpl8 (MGP_SPRETEiJ_G0016618) #7	Zdhhc17 (MGP_SPRETEiJ_G0016617) #9	Csrp2 (MGP_SPRETEiJ_G0016616) #10	E2f7 (MGP_SPRETEiJ_G0016615) #11	Nav3 (MGP_SPRETEiJ_G0016614) #12	Syt1 (MGP_SPRETEiJ_G0016613) #14	Pawr (MGP_SPRETEiJ_G0016612) #16	Ppp1r12a (MGP_SPRETEiJ_G0016611) #18	Otogl (MGP_SPRETEiJ_G0016610) #19	Ptprq (MGP_SPRETEiJ_G0016609) #20	Myf6 (MGP_SPRETEiJ_G0016608) #21	Myf5 (MGP_SPRETEiJ_G0016607) #22	Lin7a (MGP_SPRETEiJ_G0016606) #23	Acss3 (MGP_SPRETEiJ_G0016605) #25	Ppfia2 (MGP_SPRETEiJ_G0016604) #26	Ccdc59 (MGP_SPRETEiJ_G0016603) #27	Mettl25 (MGP_SPRETEiJ_G0016602) #28	Tmtc2 (MGP_SPRETEiJ_G0016601) #29	Slc6a15 (MGP_SPRETEiJ_G0016600) #32	MGP_SPRETEiJ_G0016599	Alx1 (MGP_SPRETEiJ_G0016598) #34	Rassf9 (MGP_SPRETEiJ_G0016597) #35	Nts (MGP_SPRETEiJ_G0016596) #36	Mgat4c (MGP_SPRETEiJ_G0016595) #37	1700017N19Rik (MGP_SPRETEiJ_G0016594)	4930430F08Rik (MGP_SPRETEiJ_G0016593)	Cep290 (MGP_SPRETEiJ_G0016592)
Steppe mouse	MODERN SPECIES	3222							Nav3 (ENSMSIG00000028730) #12	Syt1 (ENSMSIG00000028850) #14	Pawr (ENSMSIG00000028867) #16	Ppp1r12a (ENSMSIG00000028882) #18	ENSMSIG00000029031	ENSMSIG00000029033	Otogl (ENSMSIG00000029034) #19	Ptprq (ENSMSIG00000029070) #20	Myf6 (ENSMSIG00000029104) #21	Myf5 (ENSMSIG00000029106) #22
Ryukyu mouse	MODERN SPECIES	1	Krr1 (MGP_CAROLIEiJ_G0015800)	Phlda1 (MGP_CAROLIEiJ_G0015799)	Nap1l1 (MGP_CAROLIEiJ_G0015798)	Bbs10 (MGP_CAROLIEiJ_G0015797)	Osbpl8 (MGP_CAROLIEiJ_G0015796) #7	Zdhhc17 (MGP_CAROLIEiJ_G0015795) #9	Csrp2 (MGP_CAROLIEiJ_G0015794) #10	E2f7 (MGP_CAROLIEiJ_G0015793) #11	Nav3 (MGP_CAROLIEiJ_G0015792) #12	Syt1 (MGP_CAROLIEiJ_G0015791) #14	MGP_CAROLIEiJ_G0015790 #16	Ppp1r12a (MGP_CAROLIEiJ_G0015789) #18	Otogl (MGP_CAROLIEiJ_G0015788) #19	Ptprq (MGP_CAROLIEiJ_G0015787) #20	Myf6 (MGP_CAROLIEiJ_G0015786) #21	Myf5 (MGP_CAROLIEiJ_G0015785) #22	Lin7a (MGP_CAROLIEiJ_G0015784) #23	Acss3 (MGP_CAROLIEiJ_G0015783) #25	Ppfia2 (MGP_CAROLIEiJ_G0015782) #26	Ccdc59 (MGP_CAROLIEiJ_G0015781) #27	Mettl25 (MGP_CAROLIEiJ_G0015780) #28	Tmtc2 (MGP_CAROLIEiJ_G0015779) #29	Slc6a15 (MGP_CAROLIEiJ_G0015778) #32	MGP_CAROLIEiJ_G0015777	Alx1 (MGP_CAROLIEiJ_G0015776) #34	Rassf9 (MGP_CAROLIEiJ_G0015775) #35	Nts (MGP_CAROLIEiJ_G0015774) #36	Mgat4c (MGP_CAROLIEiJ_G0015773) #37	1700017N19Rik (MGP_CAROLIEiJ_G0015772)	4930430F08Rik (MGP_CAROLIEiJ_G0015771)	Cep290 (MGP_CAROLIEiJ_G0015770)
Shrew mouse	MODERN SPECIES	22	Krr1 (MGP_PahariEiJ_G0031287)	Phlda1 (MGP_PahariEiJ_G0031288)	MGP_PahariEiJ_G0031289	Bbs10 (MGP_PahariEiJ_G0031290)	Osbpl8 (MGP_PahariEiJ_G0031291) #7	Zdhhc17 (MGP_PahariEiJ_G0031292) #9	Csrp2 (MGP_PahariEiJ_G0031293) #10	E2f7 (MGP_PahariEiJ_G0031294) #11	MGP_PahariEiJ_G0031295 #12	Syt1 (MGP_PahariEiJ_G0031296) #14	Pawr (MGP_PahariEiJ_G0031297) #16	Ppp1r12a (MGP_PahariEiJ_G0031298) #18	MGP_PahariEiJ_G0031299 #19	Ptprq (MGP_PahariEiJ_G0031300) #20	Myf6 (MGP_PahariEiJ_G0031301) #21	Myf5 (MGP_PahariEiJ_G0031302) #22	Lin7a (MGP_PahariEiJ_G0031303) #23	Acss3 (MGP_PahariEiJ_G0031304) #25	Ppfia2 (MGP_PahariEiJ_G0031305) #26	Ccdc59 (MGP_PahariEiJ_G0031306) #27	Mettl25 (MGP_PahariEiJ_G0031307) #28	Tmtc2 (MGP_PahariEiJ_G0031308) #29	Slc6a15 (MGP_PahariEiJ_G0031309) #32	MGP_PahariEiJ_G0031310	Alx1 (MGP_PahariEiJ_G0031311) #34	Rassf9 (MGP_PahariEiJ_G0031312) #35	Nts (MGP_PahariEiJ_G0031313) #36	Mgat4c (MGP_PahariEiJ_G0031314) #37	1700017N19Rik (MGP_PahariEiJ_G0031315)	4930430F08Rik (MGP_PahariEiJ_G0031316)	Cep290 (MGP_PahariEiJ_G0031317)
Rat	MODERN SPECIES	17	Nap1l1 (ENSRNOG00000003890)	Bbs10 (ENSRNOG00000026913)	ENSRNOG00000062798	Osbpl8 (ENSRNOG00000026962) #7	Zdhhc17 (ENSRNOG00000003803) #9	Csrp2 (ENSRNOG00000003772) #10	E2f7 (ENSRNOG00000026252) #11	Nav3 (ENSRNOG00000052157) #12	Brcc3dc (ENSRNOG00000070196)	Syt1 (ENSRNOG00000006426) #14	Pawr (ENSRNOG00000005917) #16	Ppp1r12a (ENSRNOG00000004925) #18	Otogl (ENSRNOG00000030316) #19	Ptprq (ENSRNOG00000056915) #20	Myf6 (ENSRNOG00000004878) #21	Myf5 (ENSRNOG00000004768) #22	Lin7a (ENSRNOG00000004527) #23	Acss3 (ENSRNOG00000004448) #25	Ppfia2 (ENSRNOG00000004353) #26	ENSRNOG00000063471	Ccdc59 (ENSRNOG00000004183) #27	Mettl25 (ENSRNOG00000027451) #28	Tmtc2 (ENSRNOG00000004585) #29	Slc6a15 (ENSRNOG00000027468) #32	Lrriq1 (ENSRNOG00000004564) #33	Alx1 (ENSRNOG00000004390) #34	Rassf9 (ENSRNOG00000038574) #35	Nts (ENSRNOG00000004179) #36	Mgat4c (ENSRNOG00000004149) #37	AABR07056845.1 (ENSRNOG00000023762)	LOC500827 (ENSRNOG00000051928)
Upper Galilee mountains blind mole rat	MODERN SPECIES	494	ENSNGAG00000014133	Bbs10 (ENSNGAG00000022298)	Osbpl8 (ENSNGAG00000014231) #7	Zdhhc17 (ENSNGAG00000009049) #9	ENSNGAG00000023257 #10	E2f7 (ENSNGAG00000023644) #11	ENSNGAG00000024182	Nav3 (ENSNGAG00000024210) #12	Syt1 (ENSNGAG00000020988) #14	Pawr (ENSNGAG00000015922) #16	Ppp1r12a (ENSNGAG00000023300) #18	ENSNGAG00000024231	Otogl (ENSNGAG00000022483) #19	Ptprq (ENSNGAG00000024172) #20	Myf6 (ENSNGAG00000023390) #21	Myf5 (ENSNGAG00000003539) #22	Lin7a (ENSNGAG00000022827) #23	Acss3 (ENSNGAG00000015078) #25	Ppfia2 (ENSNGAG00000022807) #26	ENSNGAG00000012599	Ccdc59 (ENSNGAG00000023637) #27	Mettl25 (ENSNGAG00000016246) #28	Tmtc2 (ENSNGAG00000023652) #29
Lesser Egyptian jerboa	MODERN SPECIES	42	Bbs10 (ENSJJAG00000023405)	Osbpl8 (ENSJJAG00000024252) #7	ENSJJAG00000011419 #9	ENSJJAG00000014135 #10	ENSJJAG00000005723	E2f7 (ENSJJAG00000007878) #11	ENSJJAG00000010552	Nav3 (ENSJJAG00000012332) #12	ENSJJAG00000022372	Syt1 (ENSJJAG00000023399) #14	Pawr (ENSJJAG00000018666) #16	Ppp1r12a (ENSJJAG00000023796) #18	Otogl (ENSJJAG00000019493) #19	Ptprq (ENSJJAG00000017741) #20	Myf6 (ENSJJAG00000011250) #21	Myf5 (ENSJJAG00000003407) #22	Lin7a (ENSJJAG00000023503) #23	Acss3 (ENSJJAG00000008308) #25	Ppfia2 (ENSJJAG00000006298) #26	ENSJJAG00000003779	Ccdc59 (ENSJJAG00000015263) #27	Mettl25 (ENSJJAG00000023860) #28	Tmtc2 (ENSJJAG00000016641) #29	Slc6a15 (ENSJJAG00000006373) #32	Alx1 (ENSJJAG00000006817) #34	ENSJJAG00000002806	Rassf9 (ENSJJAG00000013251) #35	Nts (ENSJJAG00000014653) #36	Mgat4c (ENSJJAG00000021989) #37	1700017N19Rik (ENSJJAG00000023823)	4930430F08Rik (ENSJJAG00000013569)
Kangaroo rat	MODERN SPECIES	322	ENSDORG00000023399	Phlda1 (ENSDORG00000027757)	Nap1l1 (ENSDORG00000029138)	Bbs10 (ENSDORG00000000668)	Osbpl8 (ENSDORG00000000670) #7	Zdhhc17 (ENSDORG00000012435) #9	Csrp2 (ENSDORG00000012441) #10	ENSDORG00000026154 #11	Nav3 (ENSDORG00000011080) #12	Syt1 (ENSDORG00000003724) #14	Pawr (ENSDORG00000029489) #16	Ppp1r12a (ENSDORG00000007157) #18	Otogl (ENSDORG00000028677) #19	Ptprq (ENSDORG00000023208) #20	Myf6 (ENSDORG00000015435) #21	Myf5 (ENSDORG00000015437) #22	Lin7a (ENSDORG00000014355) #23	Acss3 (ENSDORG00000007288) #25	Ppfia2 (ENSDORG00000007289) #26	Mettl25 (ENSDORG00000003006) #28	Tmtc2 (ENSDORG00000005875) #29	Slc6a15 (ENSDORG00000000388) #32	ENSDORG00000008703	ENSDORG00000011012 #33	Alx1 (ENSDORG00000011021) #34	Rassf9 (ENSDORG00000029782) #35	Nts (ENSDORG00000016284) #36	Mgat4c (ENSDORG00000025545) #37	1700017N19Rik (ENSDORG00000015892)	4930430F08Rik (ENSDORG00000015893)	Cep290 (ENSDORG00000015894)
Lagomorpha	ANCESTRAL SPECIES	113	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Rabbit	MODERN SPECIES	15	ENSOCUG00000028124	ZDHHC17 (ENSOCUG00000010401) #9	ENSOCUG00000027238	ENSOCUG00000008330 #10	E2F7 (ENSOCUG00000004932) #11	ENSOCUG00000025947	NAV3 (ENSOCUG00000004936) #12	ENSOCUG00000005148	SYT1 (ENSOCUG00000014829) #14	PAWR (ENSOCUG00000013722) #16	PPP1R12A (ENSOCUG00000016701) #18	ENSOCUG00000037584	OTOGL (ENSOCUG00000014963) #19	PTPRQ (ENSOCUG00000011455) #20	MYF6 (ENSOCUG00000001457) #21	MYF5 (ENSOCUG00000025477) #22	LIN7A (ENSOCUG00000004203) #23	ACSS3 (ENSOCUG00000015752) #25	PPFIA2 (ENSOCUG00000015770) #26	ENSOCUG00000036764	CCDC59 (ENSOCUG00000017824) #27	METTL25 (ENSOCUG00000017825) #28	TMTC2 (ENSOCUG00000017847) #29	SLC6A15 (ENSOCUG00000014066) #32	TSPAN19 (ENSOCUG00000037319)	ENSOCUG00000034706	LRRIQ1 (ENSOCUG00000017527)	ALX1 (ENSOCUG00000009125) #34	ENSOCUG00000036577	RASSF9 (ENSOCUG00000017872) #35	NTS (ENSOCUG00000010336) #36
Pika	MODERN SPECIES	1627														ENSOPRG00000008989 #20	MYF6 (ENSOPRG00000008999) #21	MYF5 (ENSOPRG00000009007) #22	LIN7A (ENSOPRG00000009017) #23
Tree shrew	MODERN SPECIES	370															MYF6 (ENSTBEG00000007822) #21	MYF5 (ENSTBEG00000008363) #22
Primates	ANCESTRAL SPECIES	6	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Haplorrhini	ANCESTRAL SPECIES	3	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Simiiformes	ANCESTRAL SPECIES	4	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Catarrhini	ANCESTRAL SPECIES	4	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Hominoidea	ANCESTRAL SPECIES	5	ENSGT00940000153362.a	ENSGT00880000138028.b.b.b	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546.c #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Hominidae	ANCESTRAL SPECIES	4	ENSGT00940000153362.a	ENSGT00880000138028.b.b.b	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546.c #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	5	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00880000138028.b.b.b	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546.c #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.a.b	ENSGT00920000149095.b
Gorilla	MODERN SPECIES	3	ZDHHC17 (ENSGGOG00000023287) #9	ENSGGOG00000039704 #10	ENSGGOG00000041578 #10	ENSGGOG00000038839	E2F7 (ENSGGOG00000012645) #11	NAV3 (ENSGGOG00000006574) #12	ENSGGOG00000002908	SYT1 (ENSGGOG00000024224) #14	ENSGGOG00000022534	PAWR (ENSGGOG00000010093) #16	PPP1R12A (ENSGGOG00000014574) #18	ENSGGOG00000025286	ENSGGOG00000015088 #19	PTPRQ (ENSGGOG00000011494) #20	MYF6 (ENSGGOG00000004369) #21	MYF5 (ENSGGOG00000004366) #22	LIN7A (ENSGGOG00000038053) #23	ACSS3 (ENSGGOG00000010105) #25	PPFIA2 (ENSGGOG00000026460) #26	CCDC59 (ENSGGOG00000025296) #27	METTL25 (ENSGGOG00000023239) #28	TMTC2 (ENSGGOG00000028180) #29	ENSGGOG00000025311	SLC6A15 (ENSGGOG00000010440) #32	TSPAN19 (ENSGGOG00000022316)	LRRIQ1 (ENSGGOG00000010081)	ALX1 (ENSGGOG00000000168) #34	RASSF9 (ENSGGOG00000028426) #35	NTS (ENSGGOG00000010239) #36	MGAT4C (ENSGGOG00000015293) #37	ENSGGOG00000025144
Homo/Pan group	ANCESTRAL SPECIES	6	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00880000138028.b.b.b	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546.c #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.a.b	ENSGT00920000149095.b
Pan	ANCESTRAL SPECIES	4	ENSGT00940000156622 #7	ENSGT00950000182922.a.a.a.b.a.b.a.b.b.a	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000154389.b.e	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546.c #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.a.b	ENSGT00920000149095.b
Chimpanzee	MODERN SPECIES	3	ZDHHC17 (ENSPTRG00000005243) #9	CSRP2 (ENSPTRG00000005244) #10	ENSPTRG00000051009	E2F7 (ENSPTRG00000005245) #11	NAV3 (ENSPTRG00000005247) #12	ENSPTRG00000046920	ENSPTRG00000044151	ENSPTRG00000050322	SYT1 (ENSPTRG00000024064) #14	PAWR (ENSPTRG00000005250) #16	PPP1R12A (ENSPTRG00000005252) #18	ENSPTRG00000045837	OTOGL (ENSPTRG00000005257) #19	PTPRQ (ENSPTRG00000039205) #20	MYF6 (ENSPTRG00000005260) #21	MYF5 (ENSPTRG00000005261) #22	LIN7A (ENSPTRG00000005262) #23	ACSS3 (ENSPTRG00000005263) #25	PPFIA2 (ENSPTRG00000005265) #26	CCDC59 (ENSPTRG00000005266) #27	METTL25 (ENSPTRG00000005267) #28	TMTC2 (ENSPTRG00000005268) #29	SLC6A15 (ENSPTRG00000005269) #32	TSPAN19 (ENSPTRG00000040421)	LRRIQ1 (ENSPTRG00000005271)	ALX1 (ENSPTRG00000005272) #34	RASSF9 (ENSPTRG00000005273) #35	NTS (ENSPTRG00000005274) #36	MGAT4C (ENSPTRG00000045901) #37	ENSPTRG00000044899	C12H12orf50 (ENSPTRG00000005276)
Bonobo	MODERN SPECIES	3	OSBPL8 (ENSPPAG00000043423) #7	ENSPPAG00000040481	ZDHHC17 (ENSPPAG00000030097) #9	ENSPPAG00000042089 #10	ENSPPAG00000042681	E2F7 (ENSPPAG00000002532) #11	NAV3 (ENSPPAG00000036134) #12	ENSPPAG00000015674	ENSPPAG00000028521	SYT1 (ENSPPAG00000029261) #14	PAWR (ENSPPAG00000043711) #16	PPP1R12A (ENSPPAG00000030740) #18	OTOGL (ENSPPAG00000014085) #19	PTPRQ (ENSPPAG00000000830) #20	MYF6 (ENSPPAG00000032290) #21	MYF5 (ENSPPAG00000028699) #22	LIN7A (ENSPPAG00000026771) #23	ACSS3 (ENSPPAG00000040977) #25	PPFIA2 (ENSPPAG00000033118) #26	CCDC59 (ENSPPAG00000030113) #27	METTL25 (ENSPPAG00000028130) #28	TMTC2 (ENSPPAG00000043706) #29	SLC6A15 (ENSPPAG00000043054) #32	TSPAN19 (ENSPPAG00000042222)	LRRIQ1 (ENSPPAG00000029539)	ALX1 (ENSPPAG00000034056) #34	RASSF9 (ENSPPAG00000019366) #35	NTS (ENSPPAG00000032540) #36	MGAT4C (ENSPPAG00000031798) #37	ENSPPAG00000020965	ENSPPAG00000043288
Human	MODERN SPECIES	3	KRR1 (ENSG00000111615)	PHLDA1 (ENSG00000139289)	NAP1L1 (ENSG00000187109)	BBS10 (ENSG00000179941)	OSBPL8 (ENSG00000091039) #7	ZDHHC17 (ENSG00000186908) #9	CSRP2 (ENSG00000175183) #10	E2F7 (ENSG00000165891) #11	NAV3 (ENSG00000067798) #12	SYT1 (ENSG00000067715) #14	PAWR (ENSG00000177425) #16	PPP1R12A (ENSG00000058272) #18	OTOGL (ENSG00000165899) #19	PTPRQ (ENSG00000139304) #20	MYF6 (ENSG00000111046) #21	MYF5 (ENSG00000111049) #22	LIN7A (ENSG00000111052) #23	ACSS3 (ENSG00000111058) #25	PPFIA2 (ENSG00000139220) #26	CCDC59 (ENSG00000133773) #27	METTL25 (ENSG00000127720) #28	TMTC2 (ENSG00000179104) #29	SLC6A15 (ENSG00000072041) #32	TSPAN19 (ENSG00000231738)	LRRIQ1 (ENSG00000133640)	ALX1 (ENSG00000180318) #34	RASSF9 (ENSG00000198774) #35	NTS (ENSG00000133636) #36	MGAT4C (ENSG00000182050) #37	C12orf50 (ENSG00000165805)	C12orf29 (ENSG00000133641)
Orangutan	MODERN SPECIES	3	BBS10 (ENSPPYG00000004787)	ENSPPYG00000037353	OSBPL8 (ENSPPYG00000004788) #7	ZDHHC17 (ENSPPYG00000004789) #9	ENSPPYG00000031243 #10	E2F7 (ENSPPYG00000004791) #11	NAV3 (ENSPPYG00000004792) #12	ENSPPYG00000004793	SYT1 (ENSPPYG00000004794) #14	PAWR (ENSPPYG00000004795) #16	ENSPPYG00000025853	PPP1R12A (ENSPPYG00000004796) #18	OTOGL (ENSPPYG00000004797) #19	PTPRQ (ENSPPYG00000041069) #20	MYF6 (ENSPPYG00000004799) #21	MYF5 (ENSPPYG00000004800) #22	LIN7A (ENSPPYG00000039262) #23	ACSS3 (ENSPPYG00000004802) #25	PPFIA2 (ENSPPYG00000004803) #26	CCDC59 (ENSPPYG00000004804) #27	METTL25 (ENSPPYG00000004805) #28	TMTC2 (ENSPPYG00000004806) #29	SLC6A15 (ENSPPYG00000004807) #32	TSPAN19 (ENSPPYG00000038266)	LRRIQ1 (ENSPPYG00000004808)	RASSF9 (ENSPPYG00000033145) #35	NTS (ENSPPYG00000004810) #36	MGAT4C (ENSPPYG00000004811) #37	C12orf50 (ENSPPYG00000004812)	C12H12orf29 (ENSPPYG00000004813)	CEP290 (ENSPPYG00000004814)
Gibbon	MODERN SPECIES		NAP1L1 (ENSNLEG00000004682)	ENSNLEG00000031630	BBS10 (ENSNLEG00000004748)	OSBPL8 (ENSNLEG00000004750) #7	ZDHHC17 (ENSNLEG00000004841) #9	ENSNLEG00000004885 #10	ENSNLEG00000028737	E2F7 (ENSNLEG00000004897) #11	NAV3 (ENSNLEG00000004917) #12	SYT1 (ENSNLEG00000004995) #14	PAWR (ENSNLEG00000005035) #16	PPP1R12A (ENSNLEG00000005041) #18	OTOGL (ENSNLEG00000005115) #19	PTPRQ (ENSNLEG00000005154) #20	MYF6 (ENSNLEG00000032583) #21	MYF5 (ENSNLEG00000005207) #22	LIN7A (ENSNLEG00000032491) #23	ACSS3 (ENSNLEG00000005227) #25	PPFIA2 (ENSNLEG00000005251) #26	CCDC59 (ENSNLEG00000033968) #27	METTL25 (ENSNLEG00000005299) #28	TMTC2 (ENSNLEG00000005311) #29	SLC6A15 (ENSNLEG00000005336) #32	LRRIQ1 (ENSNLEG00000005358)	ALX1 (ENSNLEG00000005381) #34	RASSF9 (ENSNLEG00000005386) #35	NTS (ENSNLEG00000005388) #36	MGAT4C (ENSNLEG00000005393) #37	C12orf50 (ENSNLEG00000005395)	C12orf29 (ENSNLEG00000005396)	CEP290 (ENSNLEG00000005417)
Cercopithecidae	ANCESTRAL SPECIES	3	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Cercopithecinae	ANCESTRAL SPECIES	7	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Vervet Monkey	MODERN SPECIES	2	NAP1L1 (ENSCSAG00000004030)	BBS10 (ENSCSAG00000004028)	OSBPL8 (ENSCSAG00000004024) #7	ZDHHC17 (ENSCSAG00000004014) #9	CSRP2 (ENSCSAG00000004009) #10	E2F7 (ENSCSAG00000003998) #11	ENSCSAG00000003979 #12	ENSCSAG00000018912	ENSCSAG00000018914	SYT1 (ENSCSAG00000003971) #14	PAWR (ENSCSAG00000003962) #16	PPP1R12A (ENSCSAG00000003956) #18	OTOGL (ENSCSAG00000003939) #19	PTPRQ (ENSCSAG00000003913) #20	MYF6 (ENSCSAG00000003893) #21	MYF5 (ENSCSAG00000003889) #22	LIN7A (ENSCSAG00000003887) #23	ACSS3 (ENSCSAG00000003882) #25	PPFIA2 (ENSCSAG00000003876) #26	ENSCSAG00000003868 #26	CCDC59 (ENSCSAG00000003867) #27	METTL25 (ENSCSAG00000003863) #28	ENSCSAG00000018917	TMTC2 (ENSCSAG00000003860) #29	ENSCSAG00000018919	ENSCSAG00000018921	ENSCSAG00000018923	SLC6A15 (ENSCSAG00000003858) #32	TSPAN19 (ENSCSAG00000003855)	LRRIQ1 (ENSCSAG00000003850)	ALX1 (ENSCSAG00000003845) #34
Cercopithecinae_a	ANCESTRAL SPECIES	7	ENSGT00940000156622 #7	ENSGT01050000244986.b.b.d.a.a.b	ENSGT00390000009168.hb	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00940000153524.b.a.a.k.a	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00950000182767.b.b.d.hb.b.a.b.a.a.b.b
Macaca	ANCESTRAL SPECIES	6	ENSGT00940000156622 #7	ENSGT01050000244986.b.b.d.a.a.b	ENSGT00390000009168.hb	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00950000183030.m.a.a.b.b.a.b.a	ENSGT00910000147454	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00940000153524.b.a.a.k.a	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00950000182767.b.b.d.hb.b.a.b.a.a.b.b
Pig-tailed macaque	MODERN SPECIES	517	E2F7 (ENSMNEG00000025875) #11	NAV3 (ENSMNEG00000043424) #12	ENSMNEG00000000985	ENSMNEG00000009689	ENSMNEG00000026858	ENSMNEG00000028899	ENSMNEG00000037055	ENSMNEG00000038165	ENSMNEG00000031657	SYT1 (ENSMNEG00000030551) #14	PAWR (ENSMNEG00000004020) #16	PPP1R12A (ENSMNEG00000033679) #18	OTOGL (ENSMNEG00000034772) #19	PTPRQ (ENSMNEG00000045562) #20	MYF6 (ENSMNEG00000019739) #21	MYF5 (ENSMNEG00000039510) #22	LIN7A (ENSMNEG00000040769) #23	ACSS3 (ENSMNEG00000030423) #25	ENSMNEG00000021297	PPFIA2 (ENSMNEG00000041825) #26	CCDC59 (ENSMNEG00000037462) #27	METTL25 (ENSMNEG00000042500) #28	TMTC2 (ENSMNEG00000028808) #29	ENSMNEG00000032829	SLC6A15 (ENSMNEG00000005563) #32	TSPAN19 (ENSMNEG00000036225)	LRRIQ1 (ENSMNEG00000037379)	ALX1 (ENSMNEG00000034993) #34	ENSMNEG00000000984	RASSF9 (ENSMNEG00000033486) #35	NTS (ENSMNEG00000040065) #36
Macaca_a	ANCESTRAL SPECIES	6	ENSGT01030000234542.b.a.a.a.b.a.a.a.b.a.a	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT01050000245239.a.a	ENSGT00940000161627.a.a.a.a.b.a.a.a.b.c.a.a.a.b	ENSGT00940000158014 #12	ENSGT00950000183030.m.a.a.b.b.a.b.a	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.b.a.a.b.a.b.c.b	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000153052.c.b.a.a.a.a.b.b.b	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00950000182767.b.b.d.hb.b.a.b.a.a.b.b
Crab-eating macaque	MODERN SPECIES	2	NAV3 (ENSMFAG00000044289) #12	ENSMFAG00000034925	ENSMFAG00000034379	ENSMFAG00000000157	SYT1 (ENSMFAG00000003495) #14	ENSMFAG00000050054	PAWR (ENSMFAG00000062333) #16	ENSMFAG00000063729	ENSMFAG00000049694	PPP1R12A (ENSMFAG00000034239) #18	OTOGL (ENSMFAG00000031786) #19	PTPRQ (ENSMFAG00000044210) #20	ENSMFAG00000052094	ENSMFAG00000058049	MYF6 (ENSMFAG00000033881) #21	MYF5 (ENSMFAG00000042044) #22	LIN7A (ENSMFAG00000040160) #23	ENSMFAG00000031214	ACSS3 (ENSMFAG00000040344) #25	PPFIA2 (ENSMFAG00000031204) #26	ENSMFAG00000049838	CCDC59 (ENSMFAG00000034303) #27	METTL25 (ENSMFAG00000036420) #28	ENSMFAG00000051090	ENSMFAG00000052001	TMTC2 (ENSMFAG00000038030) #29	ENSMFAG00000053756	ENSMFAG00000051138	ENSMFAG00000060580	ENSMFAG00000047713	ENSMFAG00000047900
Rhesus	MODERN SPECIES	2	E2F7 (ENSMMUG00000022846) #11	ENSMMUG00000059985	ENSMMUG00000055171	ENSMMUG00000060140	NAV3 (ENSMMUG00000021329) #12	ENSMMUG00000058640	ENSMMUG00000051304	ENSMMUG00000060137	SYT1 (ENSMMUG00000005530) #14	PAWR (ENSMMUG00000015179) #16	ENSMMUG00000053591	PPP1R12A (ENSMMUG00000019214) #18	OTOGL (ENSMMUG00000000121) #19	PTPRQ (ENSMMUG00000037711) #20	MYF6 (ENSMMUG00000011667) #21	MYF5 (ENSMMUG00000011669) #22	LIN7A (ENSMMUG00000011671) #23	ENSMMUG00000017463	ACSS3 (ENSMMUG00000013800) #25	ENSMMUG00000046323	PPFIA2 (ENSMMUG00000013804) #26	ENSMMUG00000050266	CCDC59 (ENSMMUG00000063005) #27	METTL25 (ENSMMUG00000002514) #28	ENSMMUG00000059068	TMTC2 (ENSMMUG00000011305) #29	ENSMMUG00000043159	ENSMMUG00000058294	SLC6A15 (ENSMMUG00000013650) #32	TSPAN19 (ENSMMUG00000042255)	LRRIQ1 (ENSMMUG00000016535)
Cercopithecinae_b	ANCESTRAL SPECIES	2	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00390000009168.hb	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000014818.g.b.a.a.a.b.b	ENSGT00940000153294.m.b.s.f	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00940000153524.b.a.a.k.a	ENSGT00950000182839.A.c #35
Olive baboon	MODERN SPECIES	19	ZDHHC17 (ENSPANG00000004050) #9	CSRP2 (ENSPANG00000023047) #10	E2F7 (ENSPANG00000004929) #11	NAV3 (ENSPANG00000007911) #12	ENSPANG00000043139	ENSPANG00000015985	ENSPANG00000040020	SYT1 (ENSPANG00000009048) #14	PAWR (ENSPANG00000009557) #16	PPP1R12A (ENSPANG00000026354) #18	ENSPANG00000047805	OTOGL (ENSPANG00000012907) #19	PTPRQ (ENSPANG00000014456) #20	ENSPANG00000005319	MYF6 (ENSPANG00000044306) #21	MYF5 (ENSPANG00000020394) #22	LIN7A (ENSPANG00000005931) #23	ACSS3 (ENSPANG00000019084) #25	PPFIA2 (ENSPANG00000019704) #26	ENSPANG00000035488	ENSPANG00000042647	ENSPANG00000049322	CCDC59 (ENSPANG00000023011) #27	METTL25 (ENSPANG00000033969) #28	ENSPANG00000032275	TMTC2 (ENSPANG00000008622) #29	ENSPANG00000049628	ENSPANG00000005733	SLC6A15 (ENSPANG00000011238) #32	LRRIQ1 (ENSPANG00000020393)	TSPAN19 (ENSPANG00000016556)
Cercopithecinae_d	ANCESTRAL SPECIES	3	ENSGT00390000009168.hb	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000163914.c.a	ENSGT00390000003133.i.a	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000014818.g.b.a.a.a.b.a	ENSGT00940000153294.m.b.s.f	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00940000153524.b.a.a.k.a	ENSGT00950000182839.A.c #35
Sooty mangabey	MODERN SPECIES	582	ENSCATG00000039522	ENSCATG00000044128	ZDHHC17 (ENSCATG00000040479) #9	CSRP2 (ENSCATG00000040566) #10	E2F7 (ENSCATG00000035481) #11	NAV3 (ENSCATG00000032040) #12	ENSCATG00000017337	ENSCATG00000040529	ENSCATG00000044466	SYT1 (ENSCATG00000033541) #14	PAWR (ENSCATG00000034935) #16	PPP1R12A (ENSCATG00000038278) #18	OTOGL (ENSCATG00000038125) #19	PTPRQ (ENSCATG00000039610) #20	MYF6 (ENSCATG00000029151) #21	MYF5 (ENSCATG00000042162) #22	LIN7A (ENSCATG00000029939) #23	ACSS3 (ENSCATG00000030914) #25	PPFIA2 (ENSCATG00000040747) #26	ENSCATG00000038856	ENSCATG00000031323	ENSCATG00000034351	CCDC59 (ENSCATG00000044760) #27	METTL25 (ENSCATG00000044852) #28	TMTC2 (ENSCATG00000040764) #29	ENSCATG00000022828	SLC6A15 (ENSCATG00000041025) #32	TSPAN19 (ENSCATG00000034141)	LRRIQ1 (ENSCATG00000037866)	ALX1 (ENSCATG00000041762) #34	ENSCATG00000038524
Drill	MODERN SPECIES	1141													OTOGL (ENSMLEG00000040646) #19	PTPRQ (ENSMLEG00000039303) #20	MYF6 (ENSMLEG00000034432) #21	MYF5 (ENSMLEG00000038211) #22	LIN7A (ENSMLEG00000020249) #23	ACSS3 (ENSMLEG00000042153) #25	ENSMLEG00000000975	PPFIA2 (ENSMLEG00000042213) #26
Rhinopithecus	ANCESTRAL SPECIES	603													ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26
Golden snub-nosed monkey	MODERN SPECIES	2447													OTOGL (ENSRROG00000003053) #19	PTPRQ (ENSRROG00000040104) #20	MYF6 (ENSRROG00000040631) #21	MYF5 (ENSRROG00000040728) #22	LIN7A (ENSRROG00000035008) #23	ACSS3 (ENSRROG00000030884) #25	PPFIA2 (ENSRROG00000012213) #26
Black snub-nosed monkey	MODERN SPECIES	485														PTPRQ (ENSRBIG00000036416) #20	MYF6 (ENSRBIG00000034023) #21	MYF5 (ENSRBIG00000011474) #22
Platyrrhini	ANCESTRAL SPECIES	6	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.u.a.a #10	ENSGT00940000154980.u.a.b #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00910000148286	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00390000014620.j	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Cebidae	ANCESTRAL SPECIES	2	ENSGT00910000147072.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.u.a.a #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00390000014620.j	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Cebidae_a	ANCESTRAL SPECIES	8	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.u.a.a #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00550000074807.d	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00390000008708.o.a	ENSGT00940000157277 #32	ENSGT00390000014620.j	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Capuchin	MODERN SPECIES	156										PAWR (ENSCCAG00000026556) #16	PPP1R12A (ENSCCAG00000027422) #18	ENSCCAG00000033086	OTOGL (ENSCCAG00000019837) #19	PTPRQ (ENSCCAG00000033930) #20	MYF6 (ENSCCAG00000032873) #21	MYF5 (ENSCCAG00000029028) #22	LIN7A (ENSCCAG00000033374) #23	ACSS3 (ENSCCAG00000035103) #25	PPFIA2 (ENSCCAG00000029694) #26	CCDC59 (ENSCCAG00000021997) #27	METTL25 (ENSCCAG00000032764) #28	ENSCCAG00000034003	TMTC2 (ENSCCAG00000037661) #29	ENSCCAG00000032890
Bolivian squirrel monkey	MODERN SPECIES	67	BBS10 (ENSSBOG00000022169)	OSBPL8 (ENSSBOG00000030671) #7	ZDHHC17 (ENSSBOG00000036173) #9	ENSSBOG00000014459 #10	E2F7 (ENSSBOG00000028674) #11	NAV3 (ENSSBOG00000036099) #12	ENSSBOG00000036163	ENSSBOG00000025849	SYT1 (ENSSBOG00000033271) #14	PAWR (ENSSBOG00000025731) #16	PPP1R12A (ENSSBOG00000033660) #18	ENSSBOG00000026289	OTOGL (ENSSBOG00000033681) #19	PTPRQ (ENSSBOG00000027538) #20	MYF6 (ENSSBOG00000021822) #21	MYF5 (ENSSBOG00000019536) #22	LIN7A (ENSSBOG00000030034) #23	ENSSBOG00000034028	ENSSBOG00000022040	ACSS3 (ENSSBOG00000018710) #25	PPFIA2 (ENSSBOG00000021244) #26	CCDC59 (ENSSBOG00000029711) #27	METTL25 (ENSSBOG00000025680) #28	ENSSBOG00000025592	TMTC2 (ENSSBOG00000024696) #29	ENSSBOG00000032046	ENSSBOG00000035574	SLC6A15 (ENSSBOG00000036273) #32	TSPAN19 (ENSSBOG00000018936)	LRRIQ1 (ENSSBOG00000024808)	ALX1 (ENSSBOG00000028789) #34
Marmoset	MODERN SPECIES	21	ENSCJAG00000078161	BBS10 (ENSCJAG00000001113)	OSBPL8 (ENSCJAG00000001055) #7	ZDHHC17 (ENSCJAG00000019075) #9	ENSCJAG00000019153 #10	E2F7 (ENSCJAG00000019162) #11	NAV3 (ENSCJAG00000019176) #12	ENSCJAG00000078124	ENSCJAG00000078194	SYT1 (ENSCJAG00000019262) #14	PAWR (ENSCJAG00000019265) #16	PPP1R12A (ENSCJAG00000019271) #18	OTOGL (ENSCJAG00000019323) #19	PTPRQ (ENSCJAG00000019332) #20	MYF6 (ENSCJAG00000081789) #21	MYF5 (ENSCJAG00000019340) #22	LIN7A (ENSCJAG00000019343) #23	ACSS3 (ENSCJAG00000019352) #25	PPFIA2 (ENSCJAG00000019370) #26	CCDC59 (ENSCJAG00000019396) #27	METTL25 (ENSCJAG00000019400) #28	TMTC2 (ENSCJAG00000019420) #29	ENSCJAG00000073753	ENSCJAG00000081141	ENSCJAG00000086215	SLC6A15 (ENSCJAG00000019425) #32	TSPAN19 (ENSCJAG00000039345)	LRRIQ1 (ENSCJAG00000019445)	ALX1 (ENSCJAG00000080722) #34	ENSCJAG00000085601	EEA1 (ENSCJAG00000019460)
Mas night monkey	MODERN SPECIES	833	ENSANAG00000028981	ENSANAG00000021237 #10	E2F7 (ENSANAG00000036545) #11	ENSANAG00000032226	NAV3 (ENSANAG00000037686) #12	ENSANAG00000023582	ENSANAG00000023157	SYT1 (ENSANAG00000025826) #14	PAWR (ENSANAG00000022396) #16	PPP1R12A (ENSANAG00000034824) #18	ENSANAG00000019658	ENSANAG00000036662	OTOGL (ENSANAG00000024695) #19	PTPRQ (ENSANAG00000035871) #20	MYF6 (ENSANAG00000024892) #21	MYF5 (ENSANAG00000023208) #22	LIN7A (ENSANAG00000032889) #23	ACSS3 (ENSANAG00000034361) #25	PPFIA2 (ENSANAG00000023020) #26	CCDC59 (ENSANAG00000033505) #27	METTL25 (ENSANAG00000035794) #28	TMTC2 (ENSANAG00000036537) #29	ENSANAG00000022029	SLC6A15 (ENSANAG00000025270) #32	ENSANAG00000032039	TSPAN19 (ENSANAG00000013117)	LRRIQ1 (ENSANAG00000027300)	ALX1 (ENSANAG00000031059) #34	RASSF9 (ENSANAG00000030253) #35	NTS (ENSANAG00000030448) #36	MGAT4C (ENSANAG00000037245) #37
Tarsier	MODERN SPECIES	4455												OTOGL (ENSTSYG00000036620) #19	ENSTSYG00000026335	PTPRQ (ENSTSYG00000027505) #20	MYF6 (ENSTSYG00000003275) #21	MYF5 (ENSTSYG00000003282) #22	ENSTSYG00000010879 #23
Strepsirrhini	ANCESTRAL SPECIES	3	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394.b #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Lemuriformes	ANCESTRAL SPECIES	1	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394.b #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Lemuriformes_a	ANCESTRAL SPECIES	190										ENSGT00940000155394.b #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Coquerels sifaka	MODERN SPECIES	654	SAT1 (ENSPCOG00000022263)	ACOT9 (ENSPCOG00000017631)	PRDX4 (ENSPCOG00000021645)	PTCHD1 (ENSPCOG00000010244)	PHEX (ENSPCOG00000025455)	ENSPCOG00000017400	MBTPS2 (ENSPCOG00000008143)	SMPX (ENSPCOG00000025800)	CNKSR2 (ENSPCOG00000014884)	SYT1 (ENSPCOG00000025512) #14	PAWR (ENSPCOG00000018957) #16	PPP1R12A (ENSPCOG00000018987) #18	OTOGL (ENSPCOG00000027646) #19	PTPRQ (ENSPCOG00000012150) #20	MYF6 (ENSPCOG00000021756) #21	MYF5 (ENSPCOG00000012709) #22
Greater bamboo lemur	MODERN SPECIES	95						PANK3 (ENSPSMG00000017197)	ENSPSMG00000017175	CPEB4 (ENSPSMG00000017067)	ENSPSMG00000016953	SYT1 (ENSPSMG00000016943) #14	PAWR (ENSPSMG00000016915) #16	PPP1R12A (ENSPSMG00000016837) #18	OTOGL (ENSPSMG00000016582) #19	PTPRQ (ENSPSMG00000016269) #20	MYF6 (ENSPSMG00000016092) #21	MYF5 (ENSPSMG00000016083) #22	LIN7A (ENSPSMG00000016071) #23	ACSS3 (ENSPSMG00000016037) #25	PPFIA2 (ENSPSMG00000015931) #26	CCDC59 (ENSPSMG00000015532) #27	METTL25 (ENSPSMG00000015523) #28	TMTC2 (ENSPSMG00000015469) #29	SLC6A15 (ENSPSMG00000015347) #32	TSPAN19 (ENSPSMG00000015246)	LRRIQ1 (ENSPSMG00000015231)
Mouse lemur	MODERN SPECIES	29	BBS10 (ENSMICG00000042947)	OSBPL8 (ENSMICG00000000969) #7	ENSMICG00000029525	ZDHHC17 (ENSMICG00000033453) #9	CSRP2 (ENSMICG00000047076) #10	ENSMICG00000014368	E2F7 (ENSMICG00000013872) #11	NAV3 (ENSMICG00000003403) #12	SYT1 (ENSMICG00000015517) #14	PAWR (ENSMICG00000031649) #16	ENSMICG00000032513	PPP1R12A (ENSMICG00000032335) #18	OTOGL (ENSMICG00000026871) #19	PTPRQ (ENSMICG00000038737) #20	MYF6 (ENSMICG00000004274) #21	MYF5 (ENSMICG00000036139) #22	LIN7A (ENSMICG00000033894) #23	ACSS3 (ENSMICG00000010809) #25	PPFIA2 (ENSMICG00000010822) #26	CCDC59 (ENSMICG00000041747) #27	METTL25 (ENSMICG00000027175) #28	TMTC2 (ENSMICG00000031682) #29	SLC6A15 (ENSMICG00000026324) #32	TSPAN19 (ENSMICG00000038361)	LRRIQ1 (ENSMICG00000037929)	ALX1 (ENSMICG00000032710) #34	RASSF9 (ENSMICG00000042014) #35	NTS (ENSMICG00000037863) #36	MGAT4C (ENSMICG00000037297) #37	ENSMICG00000034439	ENSMICG00000035359
Bushbaby	MODERN SPECIES	122	PHLDA1 (ENSOGAG00000010317)	NAP1L1 (ENSOGAG00000010319)	BBS10 (ENSOGAG00000025855)	OSBPL8 (ENSOGAG00000017084) #7	ZDHHC17 (ENSOGAG00000013994) #9	CSRP2 (ENSOGAG00000013999) #10	E2F7 (ENSOGAG00000010821) #11	ENSOGAG00000030290	NAV3 (ENSOGAG00000010604) #12	SYT1 (ENSOGAG00000009943) #14	PAWR (ENSOGAG00000027944) #16	PPP1R12A (ENSOGAG00000010740) #18	OTOGL (ENSOGAG00000030466) #19	PTPRQ (ENSOGAG00000025362) #20	MYF6 (ENSOGAG00000001038) #21	MYF5 (ENSOGAG00000001039) #22	LIN7A (ENSOGAG00000004616) #23	ACSS3 (ENSOGAG00000014813) #25	PPFIA2 (ENSOGAG00000014823) #26	ENSOGAG00000025088	CCDC59 (ENSOGAG00000004383) #27	METTL25 (ENSOGAG00000004384) #28	TMTC2 (ENSOGAG00000000477) #29	SLC6A15 (ENSOGAG00000014207) #32	LRRIQ1 (ENSOGAG00000014209)	ALX1 (ENSOGAG00000014211) #34	RASSF9 (ENSOGAG00000003208) #35	NTS (ENSOGAG00000003210) #36	MGAT4C (ENSOGAG00000003212) #37	ENSOGAG00000032440	ENSOGAG00000034474
Laurasiatheria	ANCESTRAL SPECIES	6	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Eulipotyphla	ANCESTRAL SPECIES	1068															ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22
Hedgehog	MODERN SPECIES	13857																MYF5 (ENSEEUG00000011612) #22
Common shrew	MODERN SPECIES	12722															MYF6 (ENSSARG00000008211) #21	MYF5 (ENSSARG00000008217) #22
Laurasiatheria_a	ANCESTRAL SPECIES	6	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Artiodactyla	ANCESTRAL SPECIES	6	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Suina	ANCESTRAL SPECIES	4	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Pig	MODERN SPECIES	13	ENSSSCG00000025041	ZDHHC17 (ENSSSCG00000000952) #9	CSRP2 (ENSSSCG00000000951) #10	ENSSSCG00000043521	E2F7 (ENSSSCG00000000950) #11	ENSSSCG00000044299	NAV3 (ENSSSCG00000029249) #12	ENSSSCG00000052129	ENSSSCG00000049637	SYT1 (ENSSSCG00000000948) #14	PAWR (ENSSSCG00000036560) #16	PPP1R12A (ENSSSCG00000038973) #18	OTOGL (ENSSSCG00000000943) #19	PTPRQ (ENSSSCG00000031716) #20	MYF6 (ENSSSCG00000026533) #21	MYF5 (ENSSSCG00000000937) #22	ENSSSCG00000042719	LIN7A (ENSSSCG00000040348) #23	ACSS3 (ENSSSCG00000000939) #25	PPFIA2 (ENSSSCG00000000940) #26	CCDC59 (ENSSSCG00000038987) #27	METTL25 (ENSSSCG00000000941) #28	TMTC2 (ENSSSCG00000024065) #29	ENSSSCG00000042278	SLC6A15 (ENSSSCG00000000936) #32	TSPAN19 (ENSSSCG00000040399)	LRRIQ1 (ENSSSCG00000000934)	ALX1 (ENSSSCG00000036744) #34	RASSF9 (ENSSSCG00000034948) #35	NTS (ENSSSCG00000000932) #36	MGAT4C (ENSSSCG00000032321) #37
Chacoan peccary	MODERN SPECIES	871	ENSCWAG00000005880	PHLDA1 (ENSCWAG00000005900)	NAP1L1 (ENSCWAG00000005937)	BBS10 (ENSCWAG00000006105)	OSBPL8 (ENSCWAG00000006143) #7	ZDHHC17 (ENSCWAG00000006304) #9	CSRP2 (ENSCWAG00000006361) #10	E2F7 (ENSCWAG00000006403) #11	NAV3 (ENSCWAG00000006671) #12	SYT1 (ENSCWAG00000007382) #14	PAWR (ENSCWAG00000007454) #16	PPP1R12A (ENSCWAG00000007564) #18	OTOGL (ENSCWAG00000007720) #19	PTPRQ (ENSCWAG00000009402) #20	MYF6 (ENSCWAG00000010168) #21	MYF5 (ENSCWAG00000010199) #22	LIN7A (ENSCWAG00000010238) #23	ACSS3 (ENSCWAG00000010300) #25	PPFIA2 (ENSCWAG00000010523) #26	CCDC59 (ENSCWAG00000013098) #27	METTL25 (ENSCWAG00000013127) #28	TMTC2 (ENSCWAG00000013168) #29
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Artiodactyla_b	ANCESTRAL SPECIES	5	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Cetacea	ANCESTRAL SPECIES	8	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000154172.ab.b	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Odontoceti	ANCESTRAL SPECIES	7	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000154172.ab.b	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Sperm whale	MODERN SPECIES	17	ENSPCTG00005009623	ENSPCTG00005009647	BBS10 (ENSPCTG00005009666)	OSBPL8 (ENSPCTG00005009709) #7	ZDHHC17 (ENSPCTG00005009874) #9	CSRP2 (ENSPCTG00005009938) #10	E2F7 (ENSPCTG00005009995) #11	NAV3 (ENSPCTG00005010415) #12	SYT1 (ENSPCTG00005012311) #14	PAWR (ENSPCTG00005012474) #16	PPP1R12A (ENSPCTG00005012575) #18	ENSPCTG00005012953	OTOGL (ENSPCTG00005013033) #19	PTPRQ (ENSPCTG00005015293) #20	MYF6 (ENSPCTG00005016374) #21	MYF5 (ENSPCTG00005016429) #22	LIN7A (ENSPCTG00005016469) #23	ACSS3 (ENSPCTG00005016578) #25	PPFIA2 (ENSPCTG00005017124) #26	CCDC59 (ENSPCTG00005020122) #27	METTL25 (ENSPCTG00005020146) #28	ENSPCTG00005020220	TMTC2 (ENSPCTG00005020242) #29	SLC6A15 (ENSPCTG00005020350) #32	TSPAN19 (ENSPCTG00005020436)	LRRIQ1 (ENSPCTG00005020500)	ALX1 (ENSPCTG00005020630) #34	RASSF9 (ENSPCTG00005020645) #35	NTS (ENSPCTG00005020672) #36	MGAT4C (ENSPCTG00005020711) #37	C12orf50 (ENSPCTG00005020740)
Odontoceti_a	ANCESTRAL SPECIES	6	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000154172.ab.b	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Dolphin	MODERN SPECIES	622														ENSTTRG00000014683 #20	MYF6 (ENSTTRG00000014689) #21	MYF5 (ENSTTRG00000014691) #22	LIN7A (ENSTTRG00000014693) #23	ACSS3 (ENSTTRG00000014696) #25	PPFIA2 (ENSTTRG00000014699) #26
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000154172.ab.b	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00390000004735.A.n	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.bb.a #10	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000154172.ab.b	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00390000004735.A.n	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Beluga whale	MODERN SPECIES	39	OSBPL8 (ENSDLEG00000007401) #7	ENSDLEG00000007371	ZDHHC17 (ENSDLEG00000007362) #9	CSRP2 (ENSDLEG00000007353) #10	ENSDLEG00000007329 #11	ENSDLEG00000007322 #11	NAV3 (ENSDLEG00000006608) #12	SYT1 (ENSDLEG00000006456) #14	ENSDLEG00000006452	PAWR (ENSDLEG00000006445) #16	ENSDLEG00000006442	PPP1R12A (ENSDLEG00000006433) #18	OTOGL (ENSDLEG00000006234) #19	PTPRQ (ENSDLEG00000006066) #20	MYF6 (ENSDLEG00000006023) #21	MYF5 (ENSDLEG00000006018) #22	LIN7A (ENSDLEG00000005973) #23	ACSS3 (ENSDLEG00000005911) #25	PPFIA2 (ENSDLEG00000005438) #26
Narwhal	MODERN SPECIES	313	BBS10 (ENSMMNG00015017120)	OSBPL8 (ENSMMNG00015017163) #7	ZDHHC17 (ENSMMNG00015017285) #9	ENSMMNG00015017474	CSRP2 (ENSMMNG00015017494) #10	E2F7 (ENSMMNG00015017553) #11	NAV3 (ENSMMNG00015017728) #12	SYT1 (ENSMMNG00015017994) #14	PAWR (ENSMMNG00015018035) #16	ENSMMNG00015018085	PPP1R12A (ENSMMNG00015018194) #18	ENSMMNG00015018420	OTOGL (ENSMMNG00015018567) #19	PTPRQ (ENSMMNG00015019359) #20	MYF6 (ENSMMNG00015019715) #21	MYF5 (ENSMMNG00015019736) #22	LIN7A (ENSMMNG00015019774) #23	ENSMMNG00015019830	ACSS3 (ENSMMNG00015019853) #25	PPFIA2 (ENSMMNG00015020218) #26	CCDC59 (ENSMMNG00015020720) #27	METTL25 (ENSMMNG00015020747) #28	TMTC2 (ENSMMNG00015020798) #29	FAM50A (ENSMMNG00015020820)	SLC6A15 (ENSMMNG00015020847) #32	TSPAN19 (ENSMMNG00015020883)	LRRIQ1 (ENSMMNG00015020965)	ALX1 (ENSMMNG00015020997) #34	RASSF9 (ENSMMNG00015021023) #35	NTS (ENSMMNG00015021038) #36	MGAT4C (ENSMMNG00015021064) #37
Vaquita	MODERN SPECIES	1	OSBPL8 (ENSPSNG00000010975) #7	ENSPSNG00000010941	ENSPSNG00000010920	ZDHHC17 (ENSPSNG00000010872) #9	CSRP2 (ENSPSNG00000010823) #10	E2F7 (ENSPSNG00000010547) #11	NAV3 (ENSPSNG00000009074) #12	ENSPSNG00000008562	SYT1 (ENSPSNG00000008513) #14	PAWR (ENSPSNG00000008439) #16	ENSPSNG00000008403	PPP1R12A (ENSPSNG00000008207) #18	OTOGL (ENSPSNG00000007188) #19	PTPRQ (ENSPSNG00000006652) #20	MYF6 (ENSPSNG00000006531) #21	MYF5 (ENSPSNG00000006510) #22	LIN7A (ENSPSNG00000006484) #23	ACSS3 (ENSPSNG00000006403) #25	PPFIA2 (ENSPSNG00000005685) #26	ENSPSNG00000005450 #27	METTL25 (ENSPSNG00000005420) #28	FAM50A (ENSPSNG00000005402)	TMTC2 (ENSPSNG00000005299) #29	ENSPSNG00000005260	SLC6A15 (ENSPSNG00000005229) #32	TSPAN19 (ENSPSNG00000005188)	LRRIQ1 (ENSPSNG00000005070)	ALX1 (ENSPSNG00000005010) #34	RASSF9 (ENSPSNG00000004990) #35	NTS (ENSPSNG00000004962) #36	MGAT4C (ENSPSNG00000004935) #37
Blue whale	MODERN SPECIES	1	NAP1L1 (ENSBMSG00010020766)	BBS10 (ENSBMSG00010020864)	OSBPL8 (ENSBMSG00010020883) #7	ZDHHC17 (ENSBMSG00010020913) #9	CSRP2 (ENSBMSG00010020929) #10	E2F7 (ENSBMSG00010020948) #11	NAV3 (ENSBMSG00010021020) #12	ENSBMSG00010021165	SYT1 (ENSBMSG00010021177) #14	PAWR (ENSBMSG00010021183) #16	PPP1R12A (ENSBMSG00010021198) #18	ENSBMSG00010021208	OTOGL (ENSBMSG00010021255) #19	PTPRQ (ENSBMSG00010007468) #20	MYF6 (ENSBMSG00010007564) #21	MYF5 (ENSBMSG00010007571) #22	LIN7A (ENSBMSG00010007592) #23	ENSBMSG00010007609	ACSS3 (ENSBMSG00010007621) #25	PPFIA2 (ENSBMSG00010007808) #26	CCDC59 (ENSBMSG00010008631) #27	METTL25 (ENSBMSG00010008637) #28	ENSBMSG00010008650	TMTC2 (ENSBMSG00010008658) #29	ENSBMSG00010008664	SLC6A15 (ENSBMSG00010008679) #32	TSPAN19 (ENSBMSG00010008692)	LRRIQ1 (ENSBMSG00010008720)	ALX1 (ENSBMSG00010008770) #34	ENSBMSG00010008780	RASSF9 (ENSBMSG00010008783) #35
Pecora	ANCESTRAL SPECIES	3	ENSGT00940000153362.a.cb	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Percora_a	ANCESTRAL SPECIES	3	ENSGT00940000153362.a.cb	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Bovidae	ANCESTRAL SPECIES	3	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00390000012446.o.b	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000013187.b	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Caprinae	ANCESTRAL SPECIES		ENSGT00440000039564.b	ENSGT00940000153362.a.cb.b	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a.n #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000013187.b	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Rambouillet Sheep	MODERN SPECIES	19	PHLDA1 (ENSOARG00020002913)	ENSOARG00020002933	OSBPL8 (ENSOARG00020003030) #7	BBS10 (ENSOARG00020003354)	ENSOARG00020003381	ZDHHC17 (ENSOARG00020003403) #9	CSRP2 (ENSOARG00020003468) #10	E2F7 (ENSOARG00020003529) #11	NAV3 (ENSOARG00020003813) #12	SYT1 (ENSOARG00020005626) #14	PAWR (ENSOARG00020005665) #16	PPP1R12A (ENSOARG00020005817) #18	PTPRQ (ENSOARG00020008080) #20	MYF6 (ENSOARG00020008943) #21	MYF6 (ENSOARG00020008989) #21	MYF5 (ENSOARG00020009026) #22	LIN7A (ENSOARG00020009053) #23	ACSS3 (ENSOARG00020009124) #25	PPFIA2 (ENSOARG00020009934) #26	CCDC59 (ENSOARG00020015621) #27	TMTC2 (ENSOARG00020015711) #29	SLC6A15 (ENSOARG00020007201) #32	TSPAN19 (ENSOARG00020007275)	ALX1 (ENSOARG00020007379) #34	RASSF9 (ENSOARG00020007430) #35	NTS (ENSOARG00020007471) #36	ENSOARG00020007547	MGAT4C (ENSOARG00020007579) #37	C12orf50 (ENSOARG00020007620)	C3H12orf29 (ENSOARG00020007796)	ENSOARG00020008023
Goat	MODERN SPECIES	24	BBS10 (ENSCHIG00000016567)	OSBPL8 (ENSCHIG00000010416) #7	ZDHHC17 (ENSCHIG00000009471) #9	CSRP2 (ENSCHIG00000025767) #10	E2F7 (ENSCHIG00000023455) #11	ENSCHIG00000017418	ENSCHIG00000009714	NAV3 (ENSCHIG00000012255) #12	ENSCHIG00000020619	SYT1 (ENSCHIG00000027174) #14	PAWR (ENSCHIG00000014049) #16	PPP1R12A (ENSCHIG00000007263) #18	OTOGL (ENSCHIG00000001357) #19	PTPRQ (ENSCHIG00000026657) #20	MYF6 (ENSCHIG00000021667) #21	MYF5 (ENSCHIG00000015029) #22	LIN7A (ENSCHIG00000003123) #23	ACSS3 (ENSCHIG00000023281) #25	PPFIA2 (ENSCHIG00000022919) #26	ENSCHIG00000005384	ENSCHIG00000025817 #27	METTL25 (ENSCHIG00000003929) #28	TMTC2 (ENSCHIG00000021548) #29	SLC6A15 (ENSCHIG00000017725) #32	TSPAN19 (ENSCHIG00000013366)	LRRIQ1 (ENSCHIG00000027155)	ALX1 (ENSCHIG00000025423) #34	RASSF9 (ENSCHIG00000024146) #35	NTS (ENSCHIG00000015085) #36	MGAT4C (ENSCHIG00000026547) #37	C12orf50 (ENSCHIG00000016372)
Bovinae	ANCESTRAL SPECIES	17	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00390000012446.o.b	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000013187.b	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Bos	ANCESTRAL SPECIES	2	ENSGT00940000156622 #7	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.b.a.a.a.b	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00390000012446.o.b	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000003710.c.a.b.b	ENSGT00390000006546.i #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Bos_b	ANCESTRAL SPECIES	4	ENSGT00940000156622 #7	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.b.a.a.a.b	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00390000012446.o.b	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT01030000234758.a.a.b.a.a.b.b.a.a	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000013187.b	ENSGT00390000006546.i #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00390000005003.k.b	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Hybrid Bos Indicus	MODERN SPECIES	24	ENSBIXG00005029293	OSBPL8 (ENSBIXG00005007884) #7	ZDHHC17 (ENSBIXG00005000041) #9	CSRP2 (ENSBIXG00005007979) #10	E2F7 (ENSBIXG00005008016) #11	ENSBIXG00005008045	NAV3 (ENSBIXG00005000135) #12	ENSBIXG00005008283	SYT1 (ENSBIXG00005008356) #14	PAWR (ENSBIXG00005000179) #16	ENSBIXG00005000182	PPP1R12A (ENSBIXG00005000226) #18	OTOGL (ENSBIXG00005008900) #19	PTPRQ (ENSBIXG00005009087) #20	MYF6 (ENSBIXG00005009131) #21	MYF5 (ENSBIXG00005009143) #22	LIN7A (ENSBIXG00005009155) #23	ENSBIXG00005009169	ACSS3 (ENSBIXG00005009198) #25	ENSBIXG00005009217	ENSBIXG00005006705	PPFIA2 (ENSBIXG00005009447) #26	ENSBIXG00005009547 #27	ENSBIXG00005009553	METTL25 (ENSBIXG00005009587) #28	TMTC2 (ENSBIXG00005009679) #29	ENSBIXG00005000567	SLC6A15 (ENSBIXG00005009785) #32	TSPAN19 (ENSBIXG00005009801)	LRRIQ1 (ENSBIXG00005009865)	ALX1 (ENSBIXG00005009922) #34
Cow	MODERN SPECIES	24	BBS10 (ENSBTAG00000050467)	OSBPL8 (ENSBTAG00000004427) #7	ZDHHC17 (ENSBTAG00000021756) #9	CSRP2 (ENSBTAG00000013406) #10	E2F7 (ENSBTAG00000016931) #11	ENSBTAG00000054109	NAV3 (ENSBTAG00000009852) #12	ENSBTAG00000054695	SYT1 (ENSBTAG00000034693) #14	PAWR (ENSBTAG00000043949) #16	ENSBTAG00000048833	PPP1R12A (ENSBTAG00000014609) #18	OTOGL (ENSBTAG00000011336) #19	PTPRQ (ENSBTAG00000026977) #20	MYF6 (ENSBTAG00000014003) #21	MYF5 (ENSBTAG00000026972) #22	LIN7A (ENSBTAG00000011367) #23	ACSS3 (ENSBTAG00000018694) #25	PPFIA2 (ENSBTAG00000003036) #26	ENSBTAG00000053526	ENSBTAG00000052152	CCDC59 (ENSBTAG00000036282) #27	METTL25 (ENSBTAG00000008382) #28	TMTC2 (ENSBTAG00000002888) #29	ENSBTAG00000014765	SLC6A15 (ENSBTAG00000018432) #32	LRRIQ1 (ENSBTAG00000027900)	TSPAN19 (ENSBTAG00000047203)	ALX1 (ENSBTAG00000014977) #34	RASSF9 (ENSBTAG00000026966) #35	NTS (ENSBTAG00000005305) #36
Bos_a	ANCESTRAL SPECIES	3	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.b.a.a.a.b	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00390000012446.o.b	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.b.a.a.b.a.a.a	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000013187.b	ENSGT00390000003710.c.a.b.b	ENSGT00390000006546.i #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36
Wild yak	MODERN SPECIES	141															MYF6 (ENSBMUG00000012075) #21	MYF5 (ENSBMUG00000012079) #22	ENSBMUG00000012090 #23
Domestic yak	MODERN SPECIES	24	ENSBGRG00000009376 #10	E2F7 (ENSBGRG00000009145) #11	ENSBGRG00000009095	ENSBGRG00000009079	ENSBGRG00000009036	NAV3 (ENSBGRG00000007767) #12	SYT1 (ENSBGRG00000007621) #14	ENSBGRG00000007603	PAWR (ENSBGRG00000007479) #16	ENSBGRG00000007448	PPP1R12A (ENSBGRG00000006560) #18	OTOGL (ENSBGRG00000005461) #19	ENSBGRG00000005290	PTPRQ (ENSBGRG00000003831) #20	MYF6 (ENSBGRG00000003786) #21	MYF5 (ENSBGRG00000003759) #22	ENSBGRG00000003736	LIN7A (ENSBGRG00000003708) #23	ENSBGRG00000003689	ACSS3 (ENSBGRG00000003619) #25	ENSBGRG00000003602	ENSBGRG00000003592	PPFIA2 (ENSBGRG00000003359) #26	CCDC59 (ENSBGRG00000003316) #27	ENSBGRG00000003305	METTL25 (ENSBGRG00000003283) #28	ENSBGRG00000003272	TMTC2 (ENSBGRG00000003210) #29	ENSBGRG00000003173	ENSBGRG00000003156	SLC6A15 (ENSBGRG00000003135) #32
American bison	MODERN SPECIES	3377										SYT1 (ENSBBBG00000005031) #14	PAWR (ENSBBBG00000006786) #16	PPP1R12A (ENSBBBG00000020255) #18	OTOGL (ENSBBBG00000020070) #19	PTPRQ (ENSBBBG00000005139) #20	MYF6 (ENSBBBG00000007672) #21	MYF5 (ENSBBBG00000005327) #22	LIN7A (ENSBBBG00000019615) #23	ACSS3 (ENSBBBG00000019602) #25	PPFIA2 (ENSBBBG00000006966) #26	ENSBBBG00000004945	CCDC59 (ENSBBBG00000019197) #27	METTL25 (ENSBBBG00000004939) #28	TMTC2 (ENSBBBG00000009162) #29	SLC6A15 (ENSBBBG00000004924) #32	TSPAN19 (ENSBBBG00000019123)	LRRIQ1 (ENSBBBG00000004903)	ALX1 (ENSBBBG00000004860) #34	RASSF9 (ENSBBBG00000019025) #35	NTS (ENSBBBG00000019020) #36	MGAT4C (ENSBBBG00000004848) #37	ENSBBBG00000004839
Siberian musk deer	MODERN SPECIES	162									NAV3 (ENSMMSG00000008114) #12	SYT1 (ENSMMSG00000009031) #14	PAWR (ENSMMSG00000009120) #16	PPP1R12A (ENSMMSG00000009175) #18	OTOGL (ENSMMSG00000009620) #19	PTPRQ (ENSMMSG00000010710) #20	MYF6 (ENSMMSG00000011253) #21	MYF5 (ENSMMSG00000011275) #22	LIN7A (ENSMMSG00000011300) #23	ACSS3 (ENSMMSG00000011333) #25	ENSMMSG00000011493	PPFIA2 (ENSMMSG00000011641) #26	CCDC59 (ENSMMSG00000013247) #27	METTL25 (ENSMMSG00000013268) #28	TMTC2 (ENSMMSG00000013292) #29	SLC6A15 (ENSMMSG00000013333) #32	TSPAN19 (ENSMMSG00000013408)	LRRIQ1 (ENSMMSG00000013457)	ALX1 (ENSMMSG00000013694) #34	RASSF9 (ENSMMSG00000013706) #35	NTS (ENSMMSG00000013716) #36	MGAT4C (ENSMMSG00000013742) #37	ENSMMSG00000013762
Yarkand deer	MODERN SPECIES	22	OSBPL8 (ENSCHYG00000008637) #7	ZDHHC17 (ENSCHYG00000009052) #9	CSRP2 (ENSCHYG00000009422) #10	ENSCHYG00000009520	E2F7 (ENSCHYG00000009596) #11	ENSCHYG00000009932	NAV3 (ENSCHYG00000010069) #12	ENSCHYG00000011512	SYT1 (ENSCHYG00000011518) #14	PAWR (ENSCHYG00000011616) #16	ENSCHYG00000011841	PPP1R12A (ENSCHYG00000011940) #18	OTOGL (ENSCHYG00000013254) #19	PTPRQ (ENSCHYG00000015685) #20	MYF6 (ENSCHYG00000017934) #21	MYF5 (ENSCHYG00000018006) #22	LIN7A (ENSCHYG00000018063) #23	ACSS3 (ENSCHYG00000018161) #25	PPFIA2 (ENSCHYG00000018601) #26	ENSCHYG00000021532	CCDC59 (ENSCHYG00000021567) #27	METTL25 (ENSCHYG00000021623) #28	TMTC2 (ENSCHYG00000021769) #29	SLC6A15 (ENSCHYG00000021957) #32	TSPAN19 (ENSCHYG00000022031)	LRRIQ1 (ENSCHYG00000022133)	ALX1 (ENSCHYG00000022696) #34	RASSF9 (ENSCHYG00000022760) #35	NTS (ENSCHYG00000022786) #36	MGAT4C (ENSCHYG00000022826) #37	C12orf50 (ENSCHYG00000022875)
Camelidae	ANCESTRAL SPECIES	39	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Alpaca	MODERN SPECIES	1669													ENSVPAG00000001924	ENSVPAG00000001925 #20	MYF6 (ENSVPAG00000001926) #21	MYF5 (ENSVPAG00000001927) #22	LIN7A (ENSVPAG00000001928) #23	ACSS3 (ENSVPAG00000001929) #25	PPFIA2 (ENSVPAG00000001930) #26	CCDC59 (ENSVPAG00000001931) #27	METTL25 (ENSVPAG00000001932) #28
Arabian camel	MODERN SPECIES	3	ENSCDRG00005017029	PHLDA1 (ENSCDRG00005016995)	NAP1L1 (ENSCDRG00005016698)	BBS10 (ENSCDRG00005016659)	OSBPL8 (ENSCDRG00005016392) #7	ZDHHC17 (ENSCDRG00005016120) #9	CSRP2 (ENSCDRG00005016043) #10	E2F7 (ENSCDRG00005015968) #11	NAV3 (ENSCDRG00005014880) #12	SYT1 (ENSCDRG00005014660) #14	PAWR (ENSCDRG00005014596) #16	PPP1R12A (ENSCDRG00005012542) #18	OTOGL (ENSCDRG00005010509) #19	PTPRQ (ENSCDRG00005009356) #20	MYF6 (ENSCDRG00005009281) #21	MYF5 (ENSCDRG00005009235) #22	LIN7A (ENSCDRG00005009181) #23	ACSS3 (ENSCDRG00005008842) #25	PPFIA2 (ENSCDRG00005005786) #26	CCDC59 (ENSCDRG00005005635) #27	METTL25 (ENSCDRG00005005578) #28	TMTC2 (ENSCDRG00005005499) #29	SLC6A15 (ENSCDRG00005005426) #32	TSPAN19 (ENSCDRG00005005374)	LRRIQ1 (ENSCDRG00005005175)	ALX1 (ENSCDRG00005005138) #34	RASSF9 (ENSCDRG00005005130) #35	NTS (ENSCDRG00005005109) #36	MGAT4C (ENSCDRG00005005093) #37	C12orf50 (ENSCDRG00005021566)	C12orf29 (ENSCDRG00005021555)
Laurasiatheria_b	ANCESTRAL SPECIES	6	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Carnivora	ANCESTRAL SPECIES	3	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Felidae	ANCESTRAL SPECIES	2	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Panthera	ANCESTRAL SPECIES		ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Panthera_a	ANCESTRAL SPECIES	12	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
leopard	MODERN SPECIES	27	ENSPPRG00000000117	BBS10 (ENSPPRG00000022774)	OSBPL8 (ENSPPRG00000023047) #7	ENSPPRG00000023878	ZDHHC17 (ENSPPRG00000024071) #9	CSRP2 (ENSPPRG00000024205) #10	E2F7 (ENSPPRG00000024442) #11	NAV3 (ENSPPRG00000022007) #12	SYT1 (ENSPPRG00000014210) #14	PAWR (ENSPPRG00000013959) #16	ENSPPRG00000013642	PPP1R12A (ENSPPRG00000012756) #18	OTOGL (ENSPPRG00000007761) #19	PTPRQ (ENSPPRG00000005300) #20	MYF6 (ENSPPRG00000003909) #21	MYF5 (ENSPPRG00000003820) #22	LIN7A (ENSPPRG00000003439) #23	ACSS3 (ENSPPRG00000003248) #25	PPFIA2 (ENSPPRG00000001816) #26	ENSPPRG00000024977	CCDC59 (ENSPPRG00000022500) #27	METTL25 (ENSPPRG00000020885) #28	TMTC2 (ENSPPRG00000018820) #29
lion	MODERN SPECIES	7	PHLDA1 (ENSPLOG00000001933)	NAP1L1 (ENSPLOG00000001982)	BBS10 (ENSPLOG00000002053)	OSBPL8 (ENSPLOG00000002092) #7	ZDHHC17 (ENSPLOG00000002249) #9	CSRP2 (ENSPLOG00000002279) #10	E2F7 (ENSPLOG00000002314) #11	NAV3 (ENSPLOG00000002454) #12	ENSPLOG00000002650	SYT1 (ENSPLOG00000002662) #14	PAWR (ENSPLOG00000002686) #16	PPP1R12A (ENSPLOG00000002780) #18	OTOGL (ENSPLOG00000003151) #19	PTPRQ (ENSPLOG00000003543) #20	MYF6 (ENSPLOG00000003667) #21	MYF5 (ENSPLOG00000003675) #22	LIN7A (ENSPLOG00000003686) #23	ACSS3 (ENSPLOG00000003703) #25	PPFIA2 (ENSPLOG00000003973) #26	CCDC59 (ENSPLOG00000004335) #27	METTL25 (ENSPLOG00000004346) #28	TMTC2 (ENSPLOG00000004411) #29	SLC6A15 (ENSPLOG00000004444) #32	TSPAN19 (ENSPLOG00000004469)	ENSPLOG00000004490 #33	ALX1 (ENSPLOG00000004563) #34	RASSF9 (ENSPLOG00000004571) #35	NTS (ENSPLOG00000004580) #36	MGAT4C (ENSPLOG00000004588) #37	ENSPLOG00000004594	C12orf50 (ENSPLOG00000004616)
Tiger	MODERN SPECIES	285	GLIPR1 (ENSPTIG00000010519)	KRR1 (ENSPTIG00000009202)	NAP1L1 (ENSPTIG00000003186)	BBS10 (ENSPTIG00000020383)	OSBPL8 (ENSPTIG00000019983) #7	ZDHHC17 (ENSPTIG00000019755) #9	CSRP2 (ENSPTIG00000019308) #10	E2F7 (ENSPTIG00000016920) #11	NAV3 (ENSPTIG00000013673) #12	SYT1 (ENSPTIG00000013094) #14	PAWR (ENSPTIG00000012722) #16	PPP1R12A (ENSPTIG00000003820) #18	OTOGL (ENSPTIG00000017536) #19	PTPRQ (ENSPTIG00000014182) #20	MYF6 (ENSPTIG00000014009) #21	MYF5 (ENSPTIG00000013849) #22	LIN7A (ENSPTIG00000013465) #23	ACSS3 (ENSPTIG00000013083) #25	PPFIA2 (ENSPTIG00000008257) #26
Cat	MODERN SPECIES	238	ENSFCAG00000050261	PHLDA1 (ENSFCAG00000032023)	NAP1L1 (ENSFCAG00000000279)	OSBPL8 (ENSFCAG00000027470) #7	ZDHHC17 (ENSFCAG00000027034) #9	CSRP2 (ENSFCAG00000006548) #10	E2F7 (ENSFCAG00000010756) #11	NAV3 (ENSFCAG00000013128) #12	ENSFCAG00000048215	SYT1 (ENSFCAG00000024865) #14	PAWR (ENSFCAG00000026300) #16	PPP1R12A (ENSFCAG00000027965) #18	OTOGL (ENSFCAG00000022141) #19	PTPRQ (ENSFCAG00000026313) #20	MYF6 (ENSFCAG00000015010) #21	MYF5 (ENSFCAG00000015011) #22	LIN7A (ENSFCAG00000015014) #23	ACSS3 (ENSFCAG00000012992) #25	PPFIA2 (ENSFCAG00000012993) #26	CCDC59 (ENSFCAG00000028462) #27	METTL25 (ENSFCAG00000013377) #28	ENSFCAG00000035513	TMTC2 (ENSFCAG00000024338) #29	SLC6A15 (ENSFCAG00000029283) #32	TSPAN19 (ENSFCAG00000025693)	LRRIQ1 (ENSFCAG00000031743)	ALX1 (ENSFCAG00000034933) #34	RASSF9 (ENSFCAG00000006978) #35	NTS (ENSFCAG00000031116) #36	MGAT4C (ENSFCAG00000011896) #37	ENSFCAG00000051429
Caniformia	ANCESTRAL SPECIES	20	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Canidae	ANCESTRAL SPECIES	12	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT01090000260040.a.a.a.c.b	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00940000155052.e.b.b.c.a
Canis_lupus	ANCESTRAL SPECIES	16	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713.q #11	ENSGT00940000158890.p.a.f	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT01090000260040.a.a.a.c.b	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00940000155052.e.b.b.c.a
Dog	MODERN SPECIES	6	OSBPL8 (ENSCAFG00845006103)	OSBPL8 (ENSCAFG00845006249) #7	ZDHHC17 (ENSCAFG00845006644) #9	ENSCAFG00845006746 #10	E2F7 (ENSCAFG00845006897) #11	ENSCAFG00845007259	NAV3 (ENSCAFG00845007345) #12	SYT1 (ENSCAFG00845007651) #14	PAWR (ENSCAFG00845007786) #16	PPP1R12A (ENSCAFG00845007952) #18	ENSCAFG00845008317	ENSCAFG00845008343	OTOGL (ENSCAFG00845008423) #19	PTPRQ (ENSCAFG00845008887) #20	MYF6 (ENSCAFG00845009704) #21	ENSCAFG00845009734 #22	LIN7A (ENSCAFG00845009762) #23	ACSS3 (ENSCAFG00845009887) #25	PPFIA2 (ENSCAFG00845010311) #26	CCDC59 (ENSCAFG00845011151) #27	METTL25 (ENSCAFG00845011219) #28	TMTC2 (ENSCAFG00845011393) #29	SLC6A15 (ENSCAFG00845011599) #32	TSPAN19 (ENSCAFG00845011710)	LRRIQ1 (ENSCAFG00845011806)	ALX1 (ENSCAFG00845012248) #34	RASSF9 (ENSCAFG00845012311) #35	ENSCAFG00845012341	NTS (ENSCAFG00845012392) #36	MGAT4C (ENSCAFG00845012439) #37	ENSCAFG00845016446
Dingo	MODERN SPECIES	277	OSBPL8 (ENSCAFG00020015356) #7	ZDHHC17 (ENSCAFG00020015453) #9	CSRP2 (ENSCAFG00020015512) #10	ENSCAFG00020015518 #11	ENSCAFG00020015522 #11	ENSCAFG00020015528	ENSCAFG00020015535	NAV3 (ENSCAFG00020015546) #12	ENSCAFG00020015601	SYT1 (ENSCAFG00020015603) #14	PAWR (ENSCAFG00020015607) #16	PPP1R12A (ENSCAFG00020015626) #18	OTOGL (ENSCAFG00020015840) #19	PTPRQ (ENSCAFG00020015957) #20	MYF6 (ENSCAFG00020016005) #21	MYF5 (ENSCAFG00020016010) #22	LIN7A (ENSCAFG00020016013) #23	ACSS3 (ENSCAFG00020016033) #25	PPFIA2 (ENSCAFG00020016113) #26	CCDC59 (ENSCAFG00020016153) #27	METTL25 (ENSCAFG00020016154) #28	TMTC2 (ENSCAFG00020016159) #29	ENSCAFG00020016180	SLC6A15 (ENSCAFG00020016183) #32	TSPAN19 (ENSCAFG00020016187)	LRRIQ1 (ENSCAFG00020016192)	ALX1 (ENSCAFG00020016217) #34	RASSF9 (ENSCAFG00020016220) #35	ENSCAFG00020016221	NTS (ENSCAFG00020016223) #36	MGAT4C (ENSCAFG00020016230) #37
Red fox	MODERN SPECIES	9	ENSVVUG00000009581	NAP1L1 (ENSVVUG00000009610)	BBS10 (ENSVVUG00000009650)	OSBPL8 (ENSVVUG00000009692) #7	ZDHHC17 (ENSVVUG00000009811) #9	CSRP2 (ENSVVUG00000009828) #10	E2F7 (ENSVVUG00000009839) #11	NAV3 (ENSVVUG00000009882) #12	SYT1 (ENSVVUG00000009998) #14	PAWR (ENSVVUG00000010028) #16	PPP1R12A (ENSVVUG00000010043) #18	OTOGL (ENSVVUG00000010103) #19	ENSVVUG00000010366	PTPRQ (ENSVVUG00000010403) #20	MYF6 (ENSVVUG00000010529) #21	ENSVVUG00000010537 #22	LIN7A (ENSVVUG00000010554) #23	ACSS3 (ENSVVUG00000010570) #25	PPFIA2 (ENSVVUG00000010745) #26	ENSVVUG00000010950	CCDC59 (ENSVVUG00000010954) #27	METTL25 (ENSVVUG00000010971) #28	TMTC2 (ENSVVUG00000011020) #29	SLC6A15 (ENSVVUG00000011094) #32	ENSVVUG00000011115	TSPAN19 (ENSVVUG00000011198)	LRRIQ1 (ENSVVUG00000011218)	ALX1 (ENSVVUG00000011346) #34	ENSVVUG00000011364	NTS (ENSVVUG00000011394) #36	MGAT4C (ENSVVUG00000011397) #37
Caniformia_b	ANCESTRAL SPECIES	18	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Ursidae	ANCESTRAL SPECIES	13	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Ursus	ANCESTRAL SPECIES	260											ENSGT00940000155394 #14	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26
Polar bear	MODERN SPECIES	410											SYT1 (ENSUMAG00000004449) #14	PPP1R12A (ENSUMAG00000004409) #18	OTOGL (ENSUMAG00000004235) #19	PTPRQ (ENSUMAG00000004116) #20	MYF6 (ENSUMAG00000004099) #21	MYF5 (ENSUMAG00000004083) #22	LIN7A (ENSUMAG00000004070) #23	ACSS3 (ENSUMAG00000003597) #25	PPFIA2 (ENSUMAG00000003393) #26
American black bear	MODERN SPECIES	3995															MYF6 (ENSUAMG00000017169) #21	MYF5 (ENSUAMG00000017165) #22
Giant Panda	MODERN SPECIES	6	PHLDA1 (ENSAMEG00000006460)	NAP1L1 (ENSAMEG00000006463)	BBS10 (ENSAMEG00000006510)	OSBPL8 (ENSAMEG00000006513) #7	ZDHHC17 (ENSAMEG00000006600) #9	CSRP2 (ENSAMEG00000006632) #10	E2F7 (ENSAMEG00000007247) #11	ENSAMEG00000024301	NAV3 (ENSAMEG00000006673) #12	SYT1 (ENSAMEG00000013376) #14	PAWR (ENSAMEG00000013370) #16	PPP1R12A (ENSAMEG00000013280) #18	OTOGL (ENSAMEG00000013267) #19	PTPRQ (ENSAMEG00000013219) #20	MYF6 (ENSAMEG00000027013) #21	MYF5 (ENSAMEG00000013193) #22	LIN7A (ENSAMEG00000013191) #23	ACSS3 (ENSAMEG00000013162) #25	PPFIA2 (ENSAMEG00000013096) #26	CCDC59 (ENSAMEG00000016875) #27	METTL25 (ENSAMEG00000016877) #28	TMTC2 (ENSAMEG00000016881) #29	SLC6A15 (ENSAMEG00000009013) #32	TSPAN19 (ENSAMEG00000009009)	LRRIQ1 (ENSAMEG00000024972)	ALX1 (ENSAMEG00000009049) #34	RASSF9 (ENSAMEG00000006110) #35	NTS (ENSAMEG00000006112) #36	MGAT4C (ENSAMEG00000006123) #37	C12orf50 (ENSAMEG00000002419)	C12orf29 (ENSAMEG00000002394)
Mustelinae	ANCESTRAL SPECIES	4	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215.b.a #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Ferret	MODERN SPECIES	546													ENSMPUG00000004956 #20	ENSMPUG00000004951 #20	MYF6 (ENSMPUG00000004945) #21	MYF5 (ENSMPUG00000004935) #22	LIN7A (ENSMPUG00000004898) #23	ACSS3 (ENSMPUG00000004881) #25	ENSMPUG00000004817 #26
American mink	MODERN SPECIES	22	ENSNVIG00000003110	BBS10 (ENSNVIG00000003073)	OSBPL8 (ENSNVIG00000002847) #7	ZDHHC17 (ENSNVIG00000002801) #9	ENSNVIG00000002763 #10	E2F7 (ENSNVIG00000002695) #11	NAV3 (ENSNVIG00000002412) #12	ENSNVIG00000002371	SYT1 (ENSNVIG00000002313) #14	PAWR (ENSNVIG00000002283) #16	PPP1R12A (ENSNVIG00000001940) #18	ENSNVIG00000001919	OTOGL (ENSNVIG00000001579) #19	PTPRQ (ENSNVIG00000001320) #20	MYF6 (ENSNVIG00000001298) #21	MYF5 (ENSNVIG00000001283) #22	LIN7A (ENSNVIG00000001269) #23	ACSS3 (ENSNVIG00000001229) #25	PPFIA2 (ENSNVIG00000000848) #26	TAP26 (ENSNVIG00000000828) #27	METTL25 (ENSNVIG00000000819) #28	TMTC2 (ENSNVIG00000000786) #29	ENSNVIG00000000773	S6A15 (ENSNVIG00000000728) #32	TSN19 (ENSNVIG00000000703)	LRRIQ1 (ENSNVIG00000000618)	ALX1 (ENSNVIG00000000603) #34	RASSF9 (ENSNVIG00000000592) #35	NEUT (ENSNVIG00000000561) #36	MGT4C (ENSNVIG00000000536) #37	ENSNVIG00000000519
Laurasiatheria_c	ANCESTRAL SPECIES	5	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Chiroptera	ANCESTRAL SPECIES	4	ENSGT00390000018775	ENSGT00940000167051	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Microchiroptera	ANCESTRAL SPECIES	2	ENSGT00390000018775	ENSGT00940000167051	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Microbat	MODERN SPECIES	946	BBS10 (ENSMLUG00000001850)	OSBPL8 (ENSMLUG00000005046) #7	ENSMLUG00000029930	ENSMLUG00000003587	ZDHHC17 (ENSMLUG00000002375) #9	CSRP2 (ENSMLUG00000002384) #10	E2F7 (ENSMLUG00000012116) #11	NAV3 (ENSMLUG00000010374) #12	ENSMLUG00000027140	SYT1 (ENSMLUG00000005752) #14	ENSMLUG00000005757 #16	PPP1R12A (ENSMLUG00000005477) #18	OTOGL (ENSMLUG00000005553) #19	PTPRQ (ENSMLUG00000006091) #20	MYF6 (ENSMLUG00000004940) #21	MYF5 (ENSMLUG00000004943) #22	LIN7A (ENSMLUG00000001526) #23	ACSS3 (ENSMLUG00000001527) #25	PPFIA2 (ENSMLUG00000001537) #26	CCDC59 (ENSMLUG00000008071) #27	METTL25 (ENSMLUG00000008084) #28	TMTC2 (ENSMLUG00000010233) #29	SLC6A15 (ENSMLUG00000011461) #32	TSPAN19 (ENSMLUG00000030562)	ALX1 (ENSMLUG00000008586) #34	RASSF9 (ENSMLUG00000008746) #35	NTS (ENSMLUG00000008733) #36	ENSMLUG00000022318	MGAT4C (ENSMLUG00000012722) #37	LYNX1 (ENSMLUG00000028919)	C12orf50 (ENSMLUG00000011631)
Greater horseshoe bat	MODERN SPECIES	1	ENSRFEG00010004593	ENSRFEG00010004601	NAP1L1 (ENSRFEG00010004645)	BBS10 (ENSRFEG00010004681)	OSBPL8 (ENSRFEG00010006253) #7	ZDHHC17 (ENSRFEG00010006316) #9	CSRP2 (ENSRFEG00010006389) #10	E2F7 (ENSRFEG00010006442) #11	NAV3 (ENSRFEG00010006668) #12	SYT1 (ENSRFEG00010007403) #14	PAWR (ENSRFEG00010007574) #16	PPP1R12A (ENSRFEG00010007686) #18	OTOGL (ENSRFEG00010007970) #19	PTPRQ (ENSRFEG00010009562) #20	MYF6 (ENSRFEG00010010368) #21	MYF5 (ENSRFEG00010010395) #22	LIN7A (ENSRFEG00010010463) #23	ACSS3 (ENSRFEG00010010509) #25	PPFIA2 (ENSRFEG00010011014) #26	CCDC59 (ENSRFEG00010014412) #27	METTL25 (ENSRFEG00010014462) #28	TMTC2 (ENSRFEG00010014525) #29	ENSRFEG00010014611	SLC6A15 (ENSRFEG00010014671) #32	TSPAN19 (ENSRFEG00010014831)	LRRIQ1 (ENSRFEG00010014978)	ALX1 (ENSRFEG00010015730) #34	RASSF9 (ENSRFEG00010015800) #35	NTS (ENSRFEG00010015856) #36	MGAT4C (ENSRFEG00010015934) #37	C12orf50 (ENSRFEG00010016011)
Megabat	MODERN SPECIES	899														ENSPVAG00000003333 #20	MYF6 (ENSPVAG00000003335) #21	MYF5 (ENSPVAG00000003336) #22	LIN7A (ENSPVAG00000003338) #23
Equus	ANCESTRAL SPECIES	21	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Donkey	MODERN SPECIES	11	KRR1 (ENSEASG00005021952)	PHLDA1 (ENSEASG00005027836)	NAP1L1 (ENSEASG00005021946)	BBS10 (ENSEASG00005021945)	OSBPL8 (ENSEASG00005021942) #7	ZDHHC17 (ENSEASG00005021939) #9	ENSEASG00005021936 #10	E2F7 (ENSEASG00005021935) #11	NAV3 (ENSEASG00005021551) #12	SYT1 (ENSEASG00005021375) #14	PAWR (ENSEASG00005033077) #16	PPP1R12A (ENSEASG00005021353) #18	OTOGL (ENSEASG00005021304) #19	PTPRQ (ENSEASG00005021271) #20	MYF6 (ENSEASG00005021268) #21	MYF5 (ENSEASG00005021266) #22	LIN7A (ENSEASG00005021265) #23	ENSEASG00005024557	ACSS3 (ENSEASG00005021261) #25	PPFIA2 (ENSEASG00005021241) #26	ENSEASG00005011113	CCDC59 (ENSEASG00005021237) #27	METTL25 (ENSEASG00005021236) #28	TMTC2 (ENSEASG00005021228) #29	SLC6A15 (ENSEASG00005021226) #32	TSPAN19 (ENSEASG00005021223)	LRRIQ1 (ENSEASG00005021215)	ALX1 (ENSEASG00005021209) #34	RASSF9 (ENSEASG00005030833) #35	ENSEASG00005027182 #36	ENSEASG00005021205
Atlantogenata	ANCESTRAL SPECIES	16	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Afrotheria	ANCESTRAL SPECIES	8	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Afrotheria_a	ANCESTRAL SPECIES	8	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Elephant	MODERN SPECIES	196	ENSLAFG00000008030	NAP1L1 (ENSLAFG00000005711)	BBS10 (ENSLAFG00000009397)	OSBPL8 (ENSLAFG00000009398) #7	ZDHHC17 (ENSLAFG00000006732) #9	CSRP2 (ENSLAFG00000006735) #10	ENSLAFG00000028909	E2F7 (ENSLAFG00000017902) #11	NAV3 (ENSLAFG00000001793) #12	SYT1 (ENSLAFG00000013359) #14	ENSLAFG00000007186 #16	PPP1R12A (ENSLAFG00000014619) #18	ENSLAFG00000016020 #19	PTPRQ (ENSLAFG00000009382) #20	MYF6 (ENSLAFG00000016476) #21	MYF5 (ENSLAFG00000016473) #22	LIN7A (ENSLAFG00000014801) #23	ACSS3 (ENSLAFG00000011051) #25	PPFIA2 (ENSLAFG00000011055) #26	CCDC59 (ENSLAFG00000015368) #27	METTL25 (ENSLAFG00000015370) #28	TMTC2 (ENSLAFG00000018670) #29	ENSLAFG00000029547	SLC6A15 (ENSLAFG00000006073) #32	ENSLAFG00000020855	ALX1 (ENSLAFG00000013544) #34	RASSF9 (ENSLAFG00000028247) #35	NTS (ENSLAFG00000005894) #36	MGAT4C (ENSLAFG00000007280) #37	C12orf50 (ENSLAFG00000005231)	C12orf29 (ENSLAFG00000013286)
Hyrax	MODERN SPECIES	969															MYF6 (ENSPCAG00000001692) #21	MYF5 (ENSPCAG00000001722) #22
Tenrec	MODERN SPECIES	16487															ENSETEG00000011256 #21	MYF5 (ENSETEG00000011255) #22
Xenarthra	ANCESTRAL SPECIES	724													ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26
Armadillo	MODERN SPECIES	1911													OTOGL (ENSDNOG00000036627) #19	PTPRQ (ENSDNOG00000031827) #20	MYF6 (ENSDNOG00000019387) #21	MYF5 (ENSDNOG00000034747) #22	LIN7A (ENSDNOG00000024299) #23	ACSS3 (ENSDNOG00000015337) #25	PPFIA2 (ENSDNOG00000015350) #26
Sloth	MODERN SPECIES	13029																MYF5 (ENSCHOG00000008319) #22
Marsupialia	ANCESTRAL SPECIES	11	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.k	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Opossum	MODERN SPECIES	7	ENSMODG00000044376	ENSMODG00000020456	ENSMODG00000020458	OSBPL8 (ENSMODG00000020459) #7	ENSMODG00000048422 #9	ENSMODG00000020464 #10	E2F7 (ENSMODG00000020465) #11	NAV3 (ENSMODG00000020466) #12	SYT1 (ENSMODG00000020467) #14	PAWR (ENSMODG00000020468) #16	PPP1R12A (ENSMODG00000020471) #18	ENSMODG00000025012	OTOGL (ENSMODG00000020473) #19	PTPRQ (ENSMODG00000020476) #20	MYF6 (ENSMODG00000039074) #21	MYF5 (ENSMODG00000020478) #22	LIN7A (ENSMODG00000020479) #23	ENSMODG00000037278	ACSS3 (ENSMODG00000020480) #25	ENSMODG00000020481 #26	ENSMODG00000020484 #27	METTL25 (ENSMODG00000020485) #28	TMTC2 (ENSMODG00000020487) #29	ENSMODG00000020488	SLC6A15 (ENSMODG00000020492) #32	ALX1 (ENSMODG00000020494) #34	ENSMODG00000041685	RASSF9 (ENSMODG00000020496) #35	NTS (ENSMODG00000020497) #36	MGAT4C (ENSMODG00000047285) #37	C12orf50 (ENSMODG00000020505)
Marsupialia_b	ANCESTRAL SPECIES	13	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.k	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Diprotodontia	ANCESTRAL SPECIES	8	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.k	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Diprotodontia_a	ANCESTRAL SPECIES	8	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.k	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
koala	MODERN SPECIES	51					ZDHHC17 (ENSPCIG00000005890) #9	CSRP2 (ENSPCIG00000005894) #10	E2F7 (ENSPCIG00000025823) #11	NAV3 (ENSPCIG00000025666) #12	ENSPCIG00000026362	SYT1 (ENSPCIG00000032719) #14	PAWR (ENSPCIG00000026365) #16	PPP1R12A (ENSPCIG00000026366) #18	OTOGL (ENSPCIG00000026368) #19	PTPRQ (ENSPCIG00000029148) #20	MYF6 (ENSPCIG00000029149) #21	MYF5 (ENSPCIG00000029150) #22	LIN7A (ENSPCIG00000029151) #23	ACSS3 (ENSPCIG00000035215) #25	PPFIA2 (ENSPCIG00000024777) #26	CCDC59 (ENSPCIG00000007808) #27	METTL25 (ENSPCIG00000007809) #28	TMTC2 (ENSPCIG00000032378) #29	ENSPCIG00000011311	SLC6A15 (ENSPCIG00000027156) #32	ENSPCIG00000009153	ALX1 (ENSPCIG00000021266) #34	RASSF9 (ENSPCIG00000002684) #35	NTS (ENSPCIG00000009584) #36	MGAT4C (ENSPCIG00000034460) #37	C12orf50 (ENSPCIG00000000703)	C12orf29 (ENSPCIG00000000738)
Common wonbat	MODERN SPECIES	1095	ZDHHC17 (ENSVURG00010002037) #9	CSRP2 (ENSVURG00010002008) #10	E2F7 (ENSVURG00010001992) #11	ENSVURG00010001969	ENSVURG00010001942	ENSVURG00010001934	NAV3 (ENSVURG00010001745) #12	ENSVURG00010001638	ENSVURG00010001581	SYT1 (ENSVURG00010001565) #14	PAWR (ENSVURG00010001479) #16	PPP1R12A (ENSVURG00010001421) #18	OTOGL (ENSVURG00010001281) #19	PTPRQ (ENSVURG00010001162) #20	MYF6 (ENSVURG00010001122) #21	MYF5 (ENSVURG00010001088) #22	LIN7A (ENSVURG00010001078) #23	ACSS3 (ENSVURG00010000986) #25	PPFIA2 (ENSVURG00010000931) #26	CCDC59 (ENSVURG00010000865) #27	METTL25 (ENSVURG00010000829) #28	TMTC2 (ENSVURG00010000692) #29	ENSVURG00010000644	ENSVURG00010000614	ENSVURG00010000610	SLC6A15 (ENSVURG00010000556) #32	ENSVURG00010000506	ALX1 (ENSVURG00010000474) #34	RASSF9 (ENSVURG00010000436) #35	NTS (ENSVURG00010015898) #36	MGAT4C (ENSVURG00010015889) #37
Wallaby	MODERN SPECIES	1972															MYF6 (ENSMEUG00000010618) #21	MYF5 (ENSMEUG00000010628) #22
Tasmanian devil	MODERN SPECIES	4	KRR1 (ENSSHAG00000001646)	ENSSHAG00000031318	NAP1L1 (ENSSHAG00000002304)	BBS10 (ENSSHAG00000001800)	OSBPL8 (ENSSHAG00000023268) #7	ZDHHC17 (ENSSHAG00000022371) #9	CSRP2 (ENSSHAG00000005571) #10	E2F7 (ENSSHAG00000002919) #11	NAV3 (ENSSHAG00000001971) #12	SYT1 (ENSSHAG00000009436) #14	ENSSHAG00000022708 #16	PPP1R12A (ENSSHAG00000005280) #18	OTOGL (ENSSHAG00000010191) #19	PTPRQ (ENSSHAG00000022062) #20	MYF6 (ENSSHAG00000013331) #21	MYF5 (ENSSHAG00000013391) #22	LIN7A (ENSSHAG00000029974) #23	ENSSHAG00000025569	ACSS3 (ENSSHAG00000005298) #25	PPFIA2 (ENSSHAG00000007734) #26	ENSSHAG00000032226	CCDC59 (ENSSHAG00000031706) #27	METTL25 (ENSSHAG00000007147) #28	ENSSHAG00000030042	TMTC2 (ENSSHAG00000031167) #29	SLC6A15 (ENSSHAG00000003371) #32	ENSSHAG00000031034	ALX1 (ENSSHAG00000010658) #34	RASSF9 (ENSSHAG00000006974) #35	NTS (ENSSHAG00000007922) #36	MGAT4C (ENSSHAG00000008842) #37
Platypus	MODERN SPECIES	5	KRR1 (ENSOANG00000014451)	ENSOANG00000047378	ENSOANG00000004688	ENSOANG00000037830	OSBPL8 (ENSOANG00000011301) #7	ZDHHC17 (ENSOANG00000047613) #9	CSRP2 (ENSOANG00000007447) #10	E2F7 (ENSOANG00000007450) #11	NAV3 (ENSOANG00000007451) #12	SYT1 (ENSOANG00000007531) #14	PAWR (ENSOANG00000043356) #16	PPP1R12A (ENSOANG00000001685) #18	OTOGL (ENSOANG00000004859) #19	PTPRQ (ENSOANG00000004855) #20	MYF6 (ENSOANG00000004854) #21	MYF5 (ENSOANG00000004853) #22	ENSOANG00000041857 #23	ACSS3 (ENSOANG00000004851) #25	PPFIA2 (ENSOANG00000004850) #26	ENSOANG00000042867 #27	ENSOANG00000004849 #28	TMTC2 (ENSOANG00000015210) #29	SLC6A15 (ENSOANG00000006324) #32	ENSOANG00000050599	ENSOANG00000006648 #33	ALX1 (ENSOANG00000006647) #34	RASSF9 (ENSOANG00000006646) #35	NTS (ENSOANG00000006645) #36	MGAT4C (ENSOANG00000006644) #37	C12orf29 (ENSOANG00000006642)	C12orf50 (ENSOANG00000006643)
Sauria	ANCESTRAL SPECIES	4	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Lepidosauria	ANCESTRAL SPECIES	3	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Episquamata	ANCESTRAL SPECIES	3	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Laterata	ANCESTRAL SPECIES	6	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT01040000241648	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Common wall lizard	MODERN SPECIES	1	OSBPL8 (ENSPMRG00000018504) #7	ZDHHC17 (ENSPMRG00000018520) #9	ENSPMRG00000018530	CSRP2 (ENSPMRG00000018535) #10	E2F7 (ENSPMRG00000018546) #11	NAV3 (ENSPMRG00000018638) #12	SYT1 (ENSPMRG00000018726) #14	PAWR (ENSPMRG00000018731) #16	PPP1R12A (ENSPMRG00000018742) #18	ENSPMRG00000018764	ENSPMRG00000018768	OTOGL (ENSPMRG00000018808) #19	ENSPMRG00000019031	PTPRQ (ENSPMRG00000019053) #20	MYF6 (ENSPMRG00000019140) #21	MYF5 (ENSPMRG00000019143) #22	LIN7A (ENSPMRG00000019147) #23	ACSS3 (ENSPMRG00000019167) #25	PPFIA2 (ENSPMRG00000019499) #26	ENSPMRG00000021433	CCDC59 (ENSPMRG00000021438) #27	METTL25 (ENSPMRG00000021455) #28	ENSPMRG00000021479	TMTC2 (ENSPMRG00000021488) #29	ENSPMRG00000021497	SLC6A15 (ENSPMRG00000021501) #32	ENSPMRG00000021518 #33	ALX1 (ENSPMRG00000021545) #34	RASSF9 (ENSPMRG00000021551) #35	NTS (ENSPMRG00000009086) #36	MGAT4C (ENSPMRG00000009090) #37
Argentine black and white tegu	MODERN SPECIES	6	NAP1L1 (ENSSMRG00000001927)	OSBPL8 (ENSSMRG00000002083) #7	ZDHHC17 (ENSSMRG00000002140) #9	CSRP2 (ENSSMRG00000002146) #10	E2F7 (ENSSMRG00000002156) #11	NAV3 (ENSSMRG00000002199) #12	SYT1 (ENSSMRG00000010234) #14	PAWR (ENSSMRG00000010238) #16	PPP1R12A (ENSSMRG00000010257) #18	RPS16 (ENSSMRG00000010263)	OTOGL (ENSSMRG00000010267) #19	ENSSMRG00000010274	ENSSMRG00000010275	PTPRQ (ENSSMRG00000010276) #20	MYF6 (ENSSMRG00000010285) #21	MYF5 (ENSSMRG00000010286) #22	LIN7A (ENSSMRG00000010290) #23	ACSS3 (ENSSMRG00000010292) #25	PPFIA2 (ENSSMRG00000010302) #26	ENSSMRG00000010304	METTL25 (ENSSMRG00000010319) #28	TMTC2 (ENSSMRG00000010414) #29	SLC6A15 (ENSSMRG00000010425) #32	ENSSMRG00000010470 #33	ENSSMRG00000010489	ALX1 (ENSSMRG00000010491) #34	RASSF9 (ENSSMRG00000010505) #35	NTS (ENSSMRG00000010506) #36	MGAT4C (ENSSMRG00000010507) #37	C12orf50 (ENSSMRG00000010526)	C12orf29 (ENSSMRG00000010527)
Toxicofera	ANCESTRAL SPECIES	7	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Elapidae	ANCESTRAL SPECIES	6	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.f.a #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277.k #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Elapidae_a	ANCESTRAL SPECIES	1	ENSGT00940000153362.a	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.f.a #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277.k #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Acanthophiinae	ANCESTRAL SPECIES		ENSGT00940000153362.a	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.f.a #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277.k #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Mainland tiger snake	MODERN SPECIES	20	ENSNSUG00000001793	ZDHHC17 (ENSNSUG00000001783) #9	CSRP2 (ENSNSUG00000001781) #10	E2F7 (ENSNSUG00000001756) #11	ENSNSUG00000001751	NAV3 (ENSNSUG00000001737) #12	SYT1 (ENSNSUG00000001720) #14	PAWR (ENSNSUG00000001717) #16	PPP1R12A (ENSNSUG00000000977) #18	ENSNSUG00000000970	ENSNSUG00000000966	OTOGL (ENSNSUG00000000909) #19	ENSNSUG00000000905	PTPRQ (ENSNSUG00000000888) #20	MYF6 (ENSNSUG00000000885) #21	MYF5 (ENSNSUG00000000881) #22	LIN7A (ENSNSUG00000000879) #23	ACSS3 (ENSNSUG00000000722) #25	PPFIA2 (ENSNSUG00000000679) #26	CCDC59 (ENSNSUG00000000657) #27	METTL25 (ENSNSUG00000000356) #28	TMTC2 (ENSNSUG00000000314) #29	ENSNSUG00000000296 #32	ENSNSUG00000000286 #32	ENSNSUG00000000256 #33	ALX1 (ENSNSUG00000000235) #34	RASSF9 (ENSNSUG00000000215) #35	NTS (ENSNSUG00000000030) #36	MGAT4C (ENSNSUG00000000019) #37
Eastern brown snake	MODERN SPECIES		NAP1L1 (ENSPTXG00000007381)	ENSPTXG00000007380	OSBPL8 (ENSPTXG00000007376) #7	ZDHHC17 (ENSPTXG00000007375) #9	CSRP2 (ENSPTXG00000007374) #10	E2F7 (ENSPTXG00000007372) #11	NAV3 (ENSPTXG00000007360) #12	SYT1 (ENSPTXG00000007357) #14	PAWR (ENSPTXG00000007356) #16	PPP1R12A (ENSPTXG00000007355) #18	RPS16 (ENSPTXG00000007353)	OTOGL (ENSPTXG00000007346) #19	ENSPTXG00000007343	PTPRQ (ENSPTXG00000007341) #20	MYF6 (ENSPTXG00000007339) #21	MYF5 (ENSPTXG00000007338) #22	LIN7A (ENSPTXG00000007335) #23	ACSS3 (ENSPTXG00000007330) #25	PPFIA2 (ENSPTXG00000007321) #26	CCDC59 (ENSPTXG00000007319) #27	METTL25 (ENSPTXG00000007317) #28	TMTC2 (ENSPTXG00000007315) #29	ENSPTXG00000007314 #32	ENSPTXG00000007312 #32	ENSPTXG00000007310 #33	ALX1 (ENSPTXG00000007309) #34	RASSF9 (ENSPTXG00000007307) #35	NTS (ENSPTXG00000007306) #36	MGAT4C (ENSPTXG00000007305) #37	C12orf50 (ENSPTXG00000007304)	C12orf29 (ENSPTXG00000007302)
Blue-lipped sea krait	MODERN SPECIES	6278															MYF6 (ENSLLTG00000009704) #21	MYF5 (ENSLLTG00000009715) #22
Indian cobra	MODERN SPECIES	6	PHLDA1 (ENSNNAG00000006109)	NAP1L1 (ENSNNAG00000006156)	OSBPL8 (ENSNNAG00000006212) #7	ZDHHC17 (ENSNNAG00000006609) #9	CSRP2 (ENSNNAG00000006626) #10	E2F7 (ENSNNAG00000006676) #11	NAV3 (ENSNNAG00000007065) #12	SYT1 (ENSNNAG00000007300) #14	PAWR (ENSNNAG00000007341) #16	PPP1R12A (ENSNNAG00000007491) #18	RPS16 (ENSNNAG00000010459)	OTOGL (ENSNNAG00000010528) #19	ENSNNAG00000011195	PTPRQ (ENSNNAG00000011257) #20	MYF6 (ENSNNAG00000011423) #21	MYF5 (ENSNNAG00000011436) #22	LIN7A (ENSNNAG00000011463) #23	ACSS3 (ENSNNAG00000011558) #25	PPFIA2 (ENSNNAG00000011658) #26	CCDC59 (ENSNNAG00000012004) #27	METTL25 (ENSNNAG00000012065) #28	TMTC2 (ENSNNAG00000012643) #29	SLC6A15 (ENSNNAG00000012726) #32	ENSNNAG00000012826 #33	ALX1 (ENSNNAG00000012891) #34	RASSF9 (ENSNNAG00000012912) #35	NTS (ENSNNAG00000012925) #36	MGAT4C (ENSNNAG00000012939) #37	C12orf50 (ENSNNAG00000012961)	C12orf29 (ENSNNAG00000012986)	ENSNNAG00000012999
Lizard	MODERN SPECIES	4	LGR5 (ENSACAG00000007193)	TSPAN8 (ENSACAG00000007164)	PTPRR (ENSACAG00000021144)	PTPRB (ENSACAG00000001460)	ENSACAG00000045283	ENSACAG00000045240	SYT1 (ENSACAG00000013826) #14	ENSACAG00000039009	PAWR (ENSACAG00000038363) #16	PPP1R12A (ENSACAG00000014016) #18	ENSACAG00000042872	ENSACAG00000014176	OTOGL (ENSACAG00000014205) #19	PTPRQ (ENSACAG00000014272) #20	MYF6 (ENSACAG00000042468) #21	MYF5 (ENSACAG00000014431) #22	LIN7A (ENSACAG00000014452) #23	ACSS3 (ENSACAG00000014473) #25	ENSACAG00000039448	PPFIA2 (ENSACAG00000014550) #26	ENSACAG00000014707	METTL25 (ENSACAG00000014713) #28	ENSACAG00000044939	ENSACAG00000034859	TMTC2 (ENSACAG00000014731) #29	ENSACAG00000042686	ENSACAG00000005259	SLC6A15 (ENSACAG00000010944) #32	ENSACAG00000011087 #33	ALX1 (ENSACAG00000011108) #34	ENSACAG00000044352
tuatara	MODERN SPECIES	1455					ENSSPUG00000001612	ENSSPUG00000001605	ATP5F1C (ENSSPUG00000001593)	KIN (ENSSPUG00000001394)	ITIH2 (ENSSPUG00000001323)	ITIH5 (ENSSPUG00000001261)	ENSSPUG00000001249	SFMBT2 (ENSSPUG00000001165)	PRKCQ (ENSSPUG00000001072)	PFKFB3 (ENSSPUG00000001043)	RBM17 (ENSSPUG00000001036)	ENSSPUG00000001027 #22
Archelosauria	ANCESTRAL SPECIES	3	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Cryptodira	ANCESTRAL SPECIES	11	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Testudinoidea	ANCESTRAL SPECIES	4	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713.u #11	ENSGT00940000157713.v #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Emydidae	ANCESTRAL SPECIES	10	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713.u #11	ENSGT00940000157713.v #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000183194.a.b
painted turtle	MODERN SPECIES		P4HA3 (ENSCPBG00000000051)	ENSCPBG00000000052	ENSCPBG00000000053	SPCS2 (ENSCPBG00000000054)	XRRA1 (ENSCPBG00000000055)	RNF169 (ENSCPBG00000000056)	SYT1 (ENSCPBG00000000057) #14	ENSCPBG00000000058	PAWR (ENSCPBG00000000059) #16	PPP1R12A (ENSCPBG00000000060) #18	RPS16 (ENSCPBG00000000062)	OTOGL (ENSCPBG00000000063) #19	ENSCPBG00000000065	PTPRQ (ENSCPBG00000000067) #20	MYF6 (ENSCPBG00000000068) #21	MYF5 (ENSCPBG00000000069) #22	LIN7A (ENSCPBG00000000070) #23	ACSS3 (ENSCPBG00000000071) #25	ENSCPBG00000000072	PPFIA2 (ENSCPBG00000000073) #26	CCDC59 (ENSCPBG00000000075) #27	METTL25 (ENSCPBG00000000076) #28	TMTC2 (ENSCPBG00000000077) #29	SLC6A15 (ENSCPBG00000000079) #32	TSPAN19 (ENSCPBG00000000080)	ENSCPBG00000000081 #33	ENSCPBG00000000082	ALX1 (ENSCPBG00000000083) #34	RASSF9 (ENSCPBG00000000084) #35	NTS (ENSCPBG00000000085) #36	MGAT4C (ENSCPBG00000000086) #37
Three-toed box turtle	MODERN SPECIES	28	NAP1L1 (ENSTMTG00000017966)	BBS10 (ENSTMTG00000017983)	OSBPL8 (ENSTMTG00000018028) #7	ZDHHC17 (ENSTMTG00000018059) #9	CSRP2 (ENSTMTG00000018107) #10	ENSTMTG00000018112 #11	ENSTMTG00000018124 #11	NAV3 (ENSTMTG00000018146) #12	SYT1 (ENSTMTG00000018366) #14	PAWR (ENSTMTG00000018399) #16	PPP1R12A (ENSTMTG00000018415) #18	RPS16 (ENSTMTG00000018474)	OTOGL (ENSTMTG00000018509) #19	PTPRQ (ENSTMTG00000018868) #20	MYF6 (ENSTMTG00000018967) #21	MYF5 (ENSTMTG00000000077) #22	ENSTMTG00000000099 #23	LIN7A (ENSTMTG00000000157) #23	ACSS3 (ENSTMTG00000000183) #25	ENSTMTG00000000244 #26	ENSTMTG00000000306 #26	CCDC59 (ENSTMTG00000000341) #27	METTL25 (ENSTMTG00000000386) #28	TMTC2 (ENSTMTG00000000433) #29	SLC6A15 (ENSTMTG00000000460) #32	ENSTMTG00000000487	TSPAN19 (ENSTMTG00000000501)	ENSTMTG00000000530 #33	ALX1 (ENSTMTG00000000570) #34	RASSF9 (ENSTMTG00000000576) #35	NTS (ENSTMTG00000000587) #36
Testudinidae	ANCESTRAL SPECIES	12	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713.u #11	ENSGT00940000157713.v #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Goode s thornscrub tortoise	MODERN SPECIES		NAP1L1 (ENSGEVG00005000012)	BBS10 (ENSGEVG00005008898)	OSBPL8 (ENSGEVG00005008789) #7	ZDHHC17 (ENSGEVG00005008730) #9	CSRP2 (ENSGEVG00005008707) #10	ENSGEVG00005008668 #11	ENSGEVG00005008646 #11	NAV3 (ENSGEVG00005008397) #12	SYT1 (ENSGEVG00005008297) #14	PAWR (ENSGEVG00005008262) #16	PPP1R12A (ENSGEVG00005008199) #18	RPS16 (ENSGEVG00005008158)	OTOGL (ENSGEVG00005007663) #19	PTPRQ (ENSGEVG00005007409) #20	MYF6 (ENSGEVG00005007365) #21	MYF5 (ENSGEVG00005007350) #22	LIN7A (ENSGEVG00005007306) #23	ACSS3 (ENSGEVG00005007236) #25	PPFIA2 (ENSGEVG00005007013) #26	CCDC59 (ENSGEVG00005006965) #27	METTL25 (ENSGEVG00005006938) #28	TMTC2 (ENSGEVG00005006853) #29	ENSGEVG00005006829	ENSGEVG00005006780 #32	ENSGEVG00005006758 #32	ENSGEVG00005006696 #33	ALX1 (ENSGEVG00005006662) #34	RASSF9 (ENSGEVG00005006645) #35	NTS (ENSGEVG00005006613) #36	MGAT4C (ENSGEVG00005006595) #37	C12orf50 (ENSGEVG00005006563)
Abingdon island giant tortoise	MODERN SPECIES	2351			ENSCABG00000020097	ENSCABG00000020235	ENSCABG00000020236	ENSCABG00000020237	KLF8 (ENSCABG00000020238)	ENSCABG00000020239	ENSCABG00000020241	ENSCABG00000020242	ENSCABG00000020244	OTOGL (ENSCABG00000020245) #19	ENSCABG00000020248	PTPRQ (ENSCABG00000020251) #20	MYF6 (ENSCABG00000020254) #21	MYF5 (ENSCABG00000020256) #22
Chinese turtle	MODERN SPECIES	718			ENSPSIG00000001298	ZDHHC17 (ENSPSIG00000012905) #9	CSRP2 (ENSPSIG00000012637) #10	E2F7 (ENSPSIG00000012629) #11	NAV3 (ENSPSIG00000009060) #12	SYT1 (ENSPSIG00000007501) #14	PAWR (ENSPSIG00000007487) #16	PPP1R12A (ENSPSIG00000017200) #18	ENSPSIG00000016930	ENSPSIG00000016823	OTOGL (ENSPSIG00000014034) #19	ENSPSIG00000013550	MYF6 (ENSPSIG00000012468) #21	MYF5 (ENSPSIG00000012000) #22	LIN7A (ENSPSIG00000011871) #23	ACSS3 (ENSPSIG00000009322) #25	PPFIA2 (ENSPSIG00000007454) #26	METTL25 (ENSPSIG00000007019) #28	TMTC2 (ENSPSIG00000006034) #29
Archosauria	ANCESTRAL SPECIES	4	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Australian saltwater crocodile	MODERN SPECIES	49	BBS10 (ENSCPRG00005006087)	OSBPL8 (ENSCPRG00005006069) #7	ZDHHC17 (ENSCPRG00005006020) #9	CSRP2 (ENSCPRG00005005963) #10	E2F7 (ENSCPRG00005005958) #11	ENSCPRG00005005917	NAV3 (ENSCPRG00005004050) #12	SYT1 (ENSCPRG00005003800) #14	PAWR (ENSCPRG00005003774) #16	PPP1R12A (ENSCPRG00005003724) #18	RPS16 (ENSCPRG00005003696)	OTOGL (ENSCPRG00005003554) #19	ENSCPRG00005003525	PTPRQ (ENSCPRG00005003495) #20	MYF6 (ENSCPRG00005003486) #21	MYF5 (ENSCPRG00005003473) #22	ENSCPRG00005003470 #23	LIN7A (ENSCPRG00005003468) #23	ACSS3 (ENSCPRG00005003271) #25	PPFIA2 (ENSCPRG00005003178) #26	CCDC59 (ENSCPRG00005003134) #27	METTL25 (ENSCPRG00005003132) #28	TMTC2 (ENSCPRG00005003097) #29	SLC6A15 (ENSCPRG00005003057) #32	TSPAN19 (ENSCPRG00005003030)	ENSCPRG00005003015 #33	ENSCPRG00005003000	ALX1 (ENSCPRG00005002988) #34	RASSF9 (ENSCPRG00005002976) #35	NTS (ENSCPRG00005002955) #36	MGAT4C (ENSCPRG00005002949) #37
Aves	ANCESTRAL SPECIES	1	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Neognathae	ANCESTRAL SPECIES	3	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Neognathae_b	ANCESTRAL SPECIES	2	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Passeriformes	ANCESTRAL SPECIES	3	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Great tit	MODERN SPECIES	10	NAP1L1 (ENSPMJG00000012651)	OSBPL8 (ENSPMJG00000012652) #7	ZDHHC17 (ENSPMJG00000012653) #9	CSRP2 (ENSPMJG00000012654) #10	E2F7 (ENSPMJG00000012655) #11	NAV3 (ENSPMJG00000012656) #12	SYT1 (ENSPMJG00000012662) #14	ENSPMJG00000012663	PAWR (ENSPMJG00000012664) #16	PPP1R12A (ENSPMJG00000012665) #18	RPS16 (ENSPMJG00000012667)	OTOGL (ENSPMJG00000012668) #19	ENSPMJG00000012669	PTPRQ (ENSPMJG00000012670) #20	MYF6 (ENSPMJG00000012671) #21	MYF5 (ENSPMJG00000012672) #22	LIN7A (ENSPMJG00000012673) #23	ACSS3 (ENSPMJG00000012674) #25	PPFIA2 (ENSPMJG00000012675) #26	CCDC59 (ENSPMJG00000012676) #27	METTL25 (ENSPMJG00000012677) #28	TMTC2 (ENSPMJG00000012678) #29	SLC6A15 (ENSPMJG00000012682) #32	ENSPMJG00000012685 #33	ALX1 (ENSPMJG00000012686) #34	RASSF9 (ENSPMJG00000012688) #35	NTS (ENSPMJG00000012689) #36	MGAT4C (ENSPMJG00000012690) #37	C12orf50 (ENSPMJG00000012691)	C12orf29 (ENSPMJG00000012692)	CEP290 (ENSPMJG00000012693)
Passeriformes_d	ANCESTRAL SPECIES	3	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938	ENSGT00730000111039.C
Flycatcher	MODERN SPECIES	10	KRR1 (ENSFALG00000010395)	PHLDA1 (ENSFALG00000014745)	NAP1L1 (ENSFALG00000010403)	OSBPL8 (ENSFALG00000010404) #7	ZDHHC17 (ENSFALG00000010415) #9	CSRP2 (ENSFALG00000010426) #10	E2F7 (ENSFALG00000010433) #11	NAV3 (ENSFALG00000010449) #12	SYT1 (ENSFALG00000010476) #14	PPP1R12A (ENSFALG00000010487) #18	ENSFALG00000028909	OTOGL (ENSFALG00000010495) #19	ENSFALG00000026391	PTPRQ (ENSFALG00000010498) #20	MYF6 (ENSFALG00000010503) #21	MYF5 (ENSFALG00000010507) #22	LIN7A (ENSFALG00000010511) #23	ACSS3 (ENSFALG00000010517) #25	PPFIA2 (ENSFALG00000010521) #26	CCDC59 (ENSFALG00000010525) #27	METTL25 (ENSFALG00000010529) #28	TMTC2 (ENSFALG00000010537) #29	SLC6A15 (ENSFALG00000010541) #32	ENSFALG00000028693 #33	ALX1 (ENSFALG00000010547) #34	RASSF9 (ENSFALG00000027104) #35	NTS (ENSFALG00000025234) #36	MGAT4C (ENSFALG00000010557) #37	C12orf50 (ENSFALG00000010559)	C12orf29 (ENSFALG00000023606)	CEP290 (ENSFALG00000010610)
Passeriformes_g	ANCESTRAL SPECIES	4	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00500000044938	ENSGT00730000111039.C	ENSGT00940000157538
Passeroidea	ANCESTRAL SPECIES	3	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00500000044938	ENSGT00730000111039.C	ENSGT00940000157538
Zebra finch	MODERN SPECIES	11	NAP1L1 (ENSTGUG00000007412)	BBS10 (ENSTGUG00000007444)	OSBPL8 (ENSTGUG00000007445) #7	ZDHHC17 (ENSTGUG00000007477) #9	CSRP2 (ENSTGUG00000028299) #10	E2F7 (ENSTGUG00000007515) #11	NAV3 (ENSTGUG00000007519) #12	SYT1 (ENSTGUG00000007572) #14	PAWR (ENSTGUG00000020006) #16	PPP1R12A (ENSTGUG00000007603) #18	RPS16 (ENSTGUG00000007667)	OTOGL (ENSTGUG00000007680) #19	ENSTGUG00000023557	PTPRQ (ENSTGUG00000007720) #20	MYF6 (ENSTGUG00000007751) #21	MYF5 (ENSTGUG00000007755) #22	LIN7A (ENSTGUG00000007757) #23	ACSS3 (ENSTGUG00000007763) #25	PPFIA2 (ENSTGUG00000007778) #26	CCDC59 (ENSTGUG00000007835) #27	METTL25 (ENSTGUG00000007841) #28	TMTC2 (ENSTGUG00000007855) #29	SLC6A15 (ENSTGUG00000007865) #32	ENSTGUG00000007889 #33	ALX1 (ENSTGUG00000007899) #34	RASSF9 (ENSTGUG00000007908) #35	NTS (ENSTGUG00000027877) #36	MGAT4C (ENSTGUG00000007933) #37	ENSTGUG00000025254	C12orf29 (ENSTGUG00000007945)	CEP290 (ENSTGUG00000007963)
Common canary	MODERN SPECIES	6	NAP1L1 (ENSSCAG00000008861)	OSBPL8 (ENSSCAG00000008836) #7	ZDHHC17 (ENSSCAG00000008792) #9	CSRP2 (ENSSCAG00000008783) #10	E2F7 (ENSSCAG00000008773) #11	ENSSCAG00000008755 #12	ENSSCAG00000008738 #12	SYT1 (ENSSCAG00000008697) #14	PAWR (ENSSCAG00000008657) #16	PPP1R12A (ENSSCAG00000008580) #18	RPS16 (ENSSCAG00000008547)	OTOGL (ENSSCAG00000008492) #19	ENSSCAG00000008481	PTPRQ (ENSSCAG00000008462) #20	MYF6 (ENSSCAG00000008454) #21	MYF5 (ENSSCAG00000008451) #22	LIN7A (ENSSCAG00000008443) #23	ACSS3 (ENSSCAG00000008416) #25	PPFIA2 (ENSSCAG00000008164) #26	CCDC59 (ENSSCAG00000008055) #27	METTL25 (ENSSCAG00000007930) #28	MGAT4C (ENSSCAG00000007907) #37	NTS (ENSSCAG00000007904) #36	RASSF9 (ENSSCAG00000007901) #35	ALX1 (ENSSCAG00000007890) #34	ENSSCAG00000007880 #33	SLC6A15 (ENSSCAG00000007869) #32	TMTC2 (ENSSCAG00000007852) #29	C12orf29 (ENSSCAG00000007807)	CEP290 (ENSSCAG00000007595)	TMTC3 (ENSSCAG00000007568)
Medium ground finch	MODERN SPECIES	13	ENSGFOG00000005356	ENSGFOG00000005348	KRR1 (ENSGFOG00000005331)	NAP1L1 (ENSGFOG00000005292)	OSBPL8 (ENSGFOG00000005268) #7	ZDHHC17 (ENSGFOG00000005185) #9	CSRP2 (ENSGFOG00000005156) #10	E2F7 (ENSGFOG00000005143) #11	NAV3 (ENSGFOG00000005066) #12	SYT1 (ENSGFOG00000005048) #14	PPP1R12A (ENSGFOG00000005009) #18	RPS16 (ENSGFOG00000004986)	OTOGL (ENSGFOG00000004777) #19	PTPRQ (ENSGFOG00000004653) #20	MYF6 (ENSGFOG00000004628) #21	MYF5 (ENSGFOG00000004624) #22	LIN7A (ENSGFOG00000004616) #23	ACSS3 (ENSGFOG00000004536) #25	ENSGFOG00000000855 #26	CCDC59 (ENSGFOG00000000604) #27	METTL25 (ENSGFOG00000000588) #28	TMTC2 (ENSGFOG00000000573) #29
Neognathae_c	ANCESTRAL SPECIES		ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00500000044938	ENSGT00730000111039.C
Kakapo	MODERN SPECIES	20	ENSSHBG00005003428	OSBPL8 (ENSSHBG00005003509) #7	ZDHHC17 (ENSSHBG00005003761) #9	CSRP2 (ENSSHBG00005003817) #10	E2F7 (ENSSHBG00005003861) #11	NAV3 (ENSSHBG00005004247) #12	ENSSHBG00005004847	SYT1 (ENSSHBG00005004867) #14	PAWR (ENSSHBG00005004872) #16	PPP1R12A (ENSSHBG00005004881) #18	RPS16 (ENSSHBG00005004902)	OTOGL (ENSSHBG00005004951) #19	ENSSHBG00005004998	PTPRQ (ENSSHBG00005005034) #20	MYF6 (ENSSHBG00005005072) #21	MYF5 (ENSSHBG00005005076) #22	LIN7A (ENSSHBG00005005088) #23	ACSS3 (ENSSHBG00005005107) #25	PPFIA2 (ENSSHBG00005005123) #26	CCDC59 (ENSSHBG00005005147) #27	METTL25 (ENSSHBG00005005155) #28	TMTC2 (ENSSHBG00005005167) #29	SLC6A15 (ENSSHBG00005005181) #32	TSPAN19 (ENSSHBG00005005237)	ENSSHBG00005005257 #33	ALX1 (ENSSHBG00005005283) #34	ENSSHBG00005005293	RASSF9 (ENSSHBG00005005303) #35	NTS (ENSSHBG00005005318) #36	MGAT4C (ENSSHBG00005005332) #37	C12orf29 (ENSSHBG00005005351)
Golden eagle	MODERN SPECIES	18	NAP1L1 (ENSACCG00020011243)	BBS10 (ENSACCG00020011231)	OSBPL8 (ENSACCG00020011213) #7	ZDHHC17 (ENSACCG00020011189) #9	CSRP2 (ENSACCG00020011176) #10	E2F7 (ENSACCG00020011147) #11	NAV3 (ENSACCG00020011091) #12	SYT1 (ENSACCG00020011033) #14	PAWR (ENSACCG00020011015) #16	PPP1R12A (ENSACCG00020010939) #18	RPS16 (ENSACCG00020010874)	OTOGL (ENSACCG00020010835) #19	ENSACCG00020010786	PTPRQ (ENSACCG00020010748) #20	MYF6 (ENSACCG00020010717) #21	MYF5 (ENSACCG00020010710) #22	LIN7A (ENSACCG00020010701) #23	ACSS3 (ENSACCG00020010468) #25	PPFIA2 (ENSACCG00020010168) #26	ENSACCG00020010123	CCDC59 (ENSACCG00020010109) #27	ENSACCG00020016084	METTL25 (ENSACCG00020016068) #28	TMTC2 (ENSACCG00020016051) #29	ENSACCG00020016040	SLC6A15 (ENSACCG00020016027) #32	TSPAN19 (ENSACCG00020016013)	ENSACCG00020015998 #33	ALX1 (ENSACCG00020015990) #34	RASSF9 (ENSACCG00020015979) #35	NTS (ENSACCG00020015965) #36
Galloanserae	ANCESTRAL SPECIES	3	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Anatidae	ANCESTRAL SPECIES	14	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000267073	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Pink-footed goose	MODERN SPECIES	36	NAP1L1 (ENSABRG00000002153)	BBS10 (ENSABRG00000002187)	OSBPL8 (ENSABRG00000002275) #7	ZDHHC17 (ENSABRG00000002383) #9	CSRP2 (ENSABRG00000002441) #10	E2F7 (ENSABRG00000002456) #11	NAV3 (ENSABRG00000002539) #12	ENSABRG00000002691	SYT1 (ENSABRG00000002806) #14	PAWR (ENSABRG00000002832) #16	PPP1R12A (ENSABRG00000002856) #18	RPS16 (ENSABRG00000002997)	OTOGL (ENSABRG00000003060) #19	PTPRQ (ENSABRG00000003711) #20	MYF6 (ENSABRG00000003882) #21	MYF5 (ENSABRG00000003896) #22	LIN7A (ENSABRG00000003928) #23	ENSABRG00000003943 #25	ENSABRG00000003973 ##26	CHADL (ENSABRG00000003979)	RANGAP1 (ENSABRG00000004047)	ZC3H7B (ENSABRG00000004538)	TEF (ENSABRG00000004576)	TOB2 (ENSABRG00000004605)	PHF5A (ENSABRG00000004614)	ACO2 (ENSABRG00000004640)	POLR3H (ENSABRG00000004688)	CSDC2 (ENSABRG00000004705)	PMM1 (ENSABRG00000004715)	DESI1 (ENSABRG00000004740)	XRCC6 (ENSABRG00000004750)
Duck	MODERN SPECIES		NAP1L1 (ENSAPLG00000016178)	OSBPL8 (ENSAPLG00000016005) #7	ZDHHC17 (ENSAPLG00000014034) #9	ENSAPLG00000014346	E2F7 (ENSAPLG00000014506) #11	NAV3 (ENSAPLG00000014672) #12	ENSAPLG00000029309	SYT1 (ENSAPLG00000014912) #14	PAWR (ENSAPLG00000027740) #16	PPP1R12A (ENSAPLG00000015197) #18	RPS16 (ENSAPLG00000015907)	OTOGL (ENSAPLG00000015946) #19	ENSAPLG00000019979	PTPRQ (ENSAPLG00000016187) #20	MYF6 (ENSAPLG00000002254) #21	MYF5 (ENSAPLG00000001124) #22	ENSAPLG00000001136 #23	LIN7A (ENSAPLG00000017756) #23	ENSAPLG00000029393	RANGAP1 (ENSAPLG00000006767)	ZC3H7B (ENSAPLG00000005880)	TEF (ENSAPLG00000005838)	TOB2 (ENSAPLG00000023708)	PHF5A (ENSAPLG00000021195)	ACO2 (ENSAPLG00000005198)	POLR3H (ENSAPLG00000005063)	CSDC2 (ENSAPLG00000005057)	DESI1 (ENSAPLG00000016507)	XRCC6 (ENSAPLG00000004469)	SNU13 (ENSAPLG00000001022)	ENSAPLG00000030477
Phasianidae	ANCESTRAL SPECIES		ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Japanese quail	MODERN SPECIES		NAP1L1 (ENSCJPG00005016162)	BBS10 (ENSCJPG00005016163)	OSBPL8 (ENSCJPG00005016164) #7	ZDHHC17 (ENSCJPG00005016170) #9	CSRP2 (ENSCJPG00005016171) #10	E2F7 (ENSCJPG00005016173) #11	ENSCJPG00005016175	NAV3 (ENSCJPG00005016185) #12	SYT1 (ENSCJPG00005016211) #14	PAWR (ENSCJPG00005016216) #16	PPP1R12A (ENSCJPG00005016217) #18	RPS16 (ENSCJPG00005000776)	OTOGL (ENSCJPG00005000816) #19	PTPRQ (ENSCJPG00005001013) #20	MYF6 (ENSCJPG00005001103) #21	MYF5 (ENSCJPG00005001107) #22	LIN7A (ENSCJPG00005001112) #23	ACSS3 (ENSCJPG00005001150) #25	PPFIA2 (ENSCJPG00005001332) #26	CCDC59 (ENSCJPG00005004695) #27	METTL25 (ENSCJPG00005004697) #28	TMTC2 (ENSCJPG00005004705) #29	SLC6A15 (ENSCJPG00005004747) #32	ENSCJPG00005004764 #33	ALX1 (ENSCJPG00005004774) #34	RASSF9 (ENSCJPG00005004777) #35	NTS (ENSCJPG00005004778) #36	MGAT4C (ENSCJPG00005004780) #37	C12orf50 (ENSCJPG00005004807)	C12orf29 (ENSCJPG00005004811)	ENSCJPG00005004813
Phasianidae_b	ANCESTRAL SPECIES	9	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Chicken	MODERN SPECIES		PHLDA1 (ENSGALG00010014238)	NAP1L1 (ENSGALG00010013389)	BBS10 (ENSGALG00010013400)	OSBPL8 (ENSGALG00010013444) #7	ZDHHC17 (ENSGALG00010013476) #9	CSRP2 (ENSGALG00010013516) #10	E2F7 (ENSGALG00010013538) #11	NAV3 (ENSGALG00010013648) #12	SYT1 (ENSGALG00010012026) #14	PAWR (ENSGALG00010013283) #16	PPP1R12A (ENSGALG00010013333) #18	RPS16 (ENSGALG00010013358)	OTOGL (ENSGALG00010013364) #19	PTPRQ (ENSGALG00010012230) #20	MYF6 (ENSGALG00010012253) #21	MYF5 (ENSGALG00010012264) #22	ENSGALG00010012271 #23	ENSGALG00010014881 #23	ACSS3 (ENSGALG00010012337) #25	PPFIA2 (ENSGALG00010012450) #26	ENSGALG00010013569	CCDC59 (ENSGALG00010010017) #27	METTL25 (ENSGALG00010010042) #28	TMTC2 (ENSGALG00010011067) #29	SLC6A15 (ENSGALG00010011117) #32	TSPAN19 (ENSGALG00010011168)	ENSGALG00010011199 #33	ALX1 (ENSGALG00010011243) #34	RASSF9 (ENSGALG00010011313) #35	NTS (ENSGALG00010011352) #36	MGAT4C (ENSGALG00010011370) #37
Anura	ANCESTRAL SPECIES		ENSGT00940000155834	ENSGT00940000162446	ENSGT00940000164439	ENSGT00940000154098.a	ENSGT00730000111360	ENSGT00390000008708	ENSGT00940000157255	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00660000096975	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000167105	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00950000182956.b.b.a.a.c.a
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000016337	ENSLLEG00000016597	ENSLLEG00000016633	ENSLLEG00000016847	NUAK1 (ENSLLEG00000017219)	AVPR1A (ENSLLEG00000017308)	PPM1H (ENSLLEG00000017365)	ENSLLEG00000017515	MON2 (ENSLLEG00000017568)	ENSLLEG00000018351	ENSLLEG00000018379	OTOGL (ENSLLEG00000018482) #19	ENSLLEG00000019169	PTPRQ (ENSLLEG00000019234) #20	MYF6 (ENSLLEG00000020820) #21	MYF5 (ENSLLEG00000020856) #22	LIN7A (ENSLLEG00000020908) #23	ENSLLEG00000021060	ACSS3 (ENSLLEG00000021119) #25	ENSLLEG00000021608	PPFIA2 (ENSLLEG00000021708) #26	ENSLLEG00000023610	CCDC59 (ENSLLEG00000023716) #27	METTL25 (ENSLLEG00000023763) #28	ENSLLEG00000024005	TMTC2 (ENSLLEG00000024034) #29	SLC6A15 (ENSLLEG00000024199) #32	ENSLLEG00000024506	ENSLLEG00000024610 #33	ENSLLEG00000025376	ALX1 (ENSLLEG00000025405) #34
Frog	MODERN SPECIES	3	c12orf63 (ENSXETG00000045266)	nedd1 (ENSXETG00000021683)	ENSXETG00000034921	ENSXETG00000032908	tmpo (ENSXETG00000018759)	slc25a3 (ENSXETG00000018767)	ENSXETG00000045338	nuak1 (ENSXETG00000018772)	avpr1a (ENSXETG00000018781)	ppm1h (ENSXETG00000018793)	ptpn3 (ENSXETG00000018796)	rps16 (ENSXETG00000018809)	OTOGL (ENSXETG00000014502) #19	PTPRQ (ENSXETG00000030349) #20	myf6 (ENSXETG00000027340) #21	myf5 (ENSXETG00000014520) #22	lin7a (ENSXETG00000014525) #23	acss3 (ENSXETG00000014528) #25	ppfia2 (ENSXETG00000014532) #26	ccdc59 (ENSXETG00000014539) #27	mettl25 (ENSXETG00000014540) #28	ENSXETG00000047662	tmtc2 (ENSXETG00000021370) #29	ENSXETG00000042111	slc6a15 (ENSXETG00000021372) #32	lrriq1 (ENSXETG00000037765) #33	alx1 (ENSXETG00000021397) #34	rassf9 (ENSXETG00000011745) #35	nts (ENSXETG00000040562) #36	mgat4c (ENSXETG00000011744) #37	cep290 (ENSXETG00000011742)
Actinopterygii	ANCESTRAL SPECIES	17	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00660000096975	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000167105	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00500000044938
Neopterygii	ANCESTRAL SPECIES	21	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00960000187527	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00660000096975	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000167105	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00500000044938
Osteoglossocephalai	ANCESTRAL SPECIES	48	ENSGT00940000163632	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.k.b	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26
Osteoglossiformes	ANCESTRAL SPECIES	251	ENSGT00390000018775	ENSGT00940000165334	ENSGT00440000039564.b.a	ENSGT00940000153362.a.d	ENSGT00940000156622.a #7	ENSGT00530000063074.b.b.c #9	ENSGT00940000154980.db #10	ENSGT00940000157713.b #11	ENSGT00940000158014.a.b #12	ENSGT00390000000406.n #16	ENSGT00940000156120.a.a #18	ENSGT00390000013067.l	ENSGT00940000160698 #19	ENSGT00940000167492.i	ENSGT00950000182959.a.b.b.a.k #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.`b #26
P. kingsleyae	MODERN SPECIES	330								ENSPKIG00000003485 #12	syt1a (ENSPKIG00000003538) #14	PAWR (ENSPKIG00000003600) #16	ppp1r12a (ENSPKIG00000003762) #18	rps16 (ENSPKIG00000004000)	OTOGL (ENSPKIG00000004061) #19	ENSPKIG00000004182	myf6 (ENSPKIG00000004248) #21	myf5 (ENSPKIG00000004272) #22	lin7a (ENSPKIG00000004317) #23	ACSS3 (ENSPKIG00000004377) #25	ppfia2 (ENSPKIG00000004590) #26
Asian bonytongue	MODERN SPECIES	16	krr1 (ENSSFOG00015031941)	phlda1 (ENSSFOG00015033220)	nap1l1 (ENSSFOG00015018510)	OSBPL8 (ENSSFOG00015018553) #7	zdhhc17 (ENSSFOG00015018700) #9	csrp2 (ENSSFOG00015018779) #10	nav3 (ENSSFOG00015018832) #12	ENSSFOG00015018791	syt1a (ENSSFOG00015031929) #14	PAWR (ENSSFOG00015019109) #16	ppp1r12a (ENSSFOG00015019159) #18	rps16 (ENSSFOG00015019382)	OTOGL (ENSSFOG00015019419) #19	ENSSFOG00015019468	myf6 (ENSSFOG00015019606) #21	myf5 (ENSSFOG00015019621) #22	lin7a (ENSSFOG00015019629) #23	ACSS3 (ENSSFOG00015019639) #25	ppfia2 (ENSSFOG00015019713) #26	TMTC2 (ENSSFOG00015019839) #29	ENSSFOG00015029516	IQSEC3 (ENSSFOG00015019895)	ENSSFOG00015019921	ddx11 (ENSSFOG00015019931)	fkbp4 (ENSSFOG00015019964)	ENSSFOG00015019985	ENSSFOG00015020008	ENSSFOG00015020016	tnni1c (ENSSFOG00015020045)	c2cd5 (ENSSFOG00015020202)	st8sia1 (ENSSFOG00015020372)
Clupeocephala	ANCESTRAL SPECIES	188	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00510000047886.b	ENSGT00940000171263	ENSGT00940000158014 #12	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.k.a	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h
Otomorpha	ANCESTRAL SPECIES	204	ENSGT00940000156038.b	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00510000047886.b	ENSGT00940000158014 #12	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.k.a	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h
Clupeiformes	ANCESTRAL SPECIES	62	ENSGT00940000156038.b	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00510000047886.b	ENSGT00940000158014 #12	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.k.a	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000172289	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00940000159750	ENSGT00940000154814.b	ENSGT00940000156403.b	ENSGT00950000182937.B.b
Denticle herring	MODERN SPECIES	6	OSBPL8 (ENSDCDG00000022762) #7	zdhhc17 (ENSDCDG00000026306) #9	csrp2 (ENSDCDG00000026322) #10	e2f7 (ENSDCDG00000026324) #11	ENSDCDG00000026325	ENSDCDG00000026326	ENSDCDG00000026328	ENSDCDG00000026331	nav3 (ENSDCDG00000026354) #12	syt1a (ENSDCDG00000027575) #14	ENSDCDG00000027582	pawr (ENSDCDG00000027583) #16	ppp1r12a (ENSDCDG00000027584) #18	rps16 (ENSDCDG00000027593)	myf6 (ENSDCDG00000027598) #21	myf5 (ENSDCDG00000027600) #22	lin7a (ENSDCDG00000027602) #23	ACSS3 (ENSDCDG00000027609) #25	ppfia2 (ENSDCDG00000027692) #26	ENSDCDG00000030343	llph (ENSDCDG00000030344)	hcls1 (ENSDCDG00000030354)	ENSDCDG00000030434	guca1a (ENSDCDG00000030436)	orc5 (ENSDCDG00000030439)	lhfpl3 (ENSDCDG00000030443)	DNAH6 (ENSDCDG00000030470)	ENSDCDG00000030792	si:cabz01085950.1 (ENSDCDG00000030919)	PTPRO (ENSDCDG00000030969)	eps8a (ENSDCDG00000032073)
Atlantic herring	MODERN SPECIES	7	bmpr2a (ENSCHAG00000004641)	ENSCHAG00000005504	slc15a1b (ENSCHAG00000011257)	ENSCHAG00000011604	nr4a2b (ENSCHAG00000011794)	gpd2 (ENSCHAG00000011812)	ENSCHAG00000012171	optn (ENSCHAG00000012181)	ccdc3a (ENSCHAG00000012193)	camk1da (ENSCHAG00000012217)	cdc123 (ENSCHAG00000012817)	ENSCHAG00000012859	TIMM22 (ENSCHAG00000012880)	ENSCHAG00000012890	myf6 (ENSCHAG00000012902) #21	myf5 (ENSCHAG00000012907) #22	lin7a (ENSCHAG00000012925) #23	ACSS3 (ENSCHAG00000012966) #25	ENSCHAG00000013958	ENSCHAG00000013985	ppfia2 (ENSCHAG00000014083) #26	ENSCHAG00000017004	ENSCHAG00000017023	ENSCHAG00000017045	NUAK1 (ENSCHAG00000017150)	prl2 (ENSCHAG00000017173)	MID1 (ENSCHAG00000017268)	ARHGAP6 (ENSCHAG00000017388)	MSL3 (ENSCHAG00000017515)	ENSCHAG00000017610	PRPS2 (ENSCHAG00000017630)
Otophysi	ANCESTRAL SPECIES	40	ENSGT00390000018775	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00510000047886.b	ENSGT00940000158014 #12	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.b.b.a
Characiphysae	ANCESTRAL SPECIES	67	ENSGT00390000010830	ENSGT00940000165853	ENSGT00390000018775	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000158014 #12	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a.l #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00990000204681	ENSGT00940000158039.h	ENSGT00940000159379	ENSGT00940000153372.A.f
Characiphysae_b	ANCESTRAL SPECIES	161										ENSGT00940000158014 #12	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a.l #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.b.b.a
Characoidei	ANCESTRAL SPECIES	182										ENSGT00940000158014 #12	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a.l #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.b.b.a
Mexicana tetra	MODERN SPECIES	22	ost4 (ENSAMXG00000025270)	ENSAMXG00000043766	agbl5 (ENSAMXG00000001121)	tmem214 (ENSAMXG00000001600)	ENSAMXG00000030619	ENSAMXG00000036395	ENSAMXG00000039430	ENSAMXG00000036999	nav3 (ENSAMXG00000016811) #12	ENSAMXG00000036051	syt1a (ENSAMXG00000000351) #14	pawr (ENSAMXG00000039462) #16	ppp1r12a (ENSAMXG00000000386) #18	rps16 (ENSAMXG00000033866)	myf6 (ENSAMXG00000000425) #21	myf5 (ENSAMXG00000000428) #22	LIN7B (ENSAMXG00000035915) ##23	ppfia2 (ENSAMXG00000006001) #26	llph (ENSAMXG00000030053)	hcls1 (ENSAMXG00000006045)	ENSAMXG00000006063	guca1a (ENSAMXG00000006082)	orc5 (ENSAMXG00000006161)	ENSAMXG00000037520	lhfpl3 (ENSAMXG00000032533)	ENSAMXG00000031350	ENSAMXG00000037828	ndufb2 (ENSAMXG00000006366)	KDM7A (ENSAMXG00000006392)	ENSAMXG00000041110	SEMA3C (ENSAMXG00000006459)
Red-bellied piranha	MODERN SPECIES	150					ENSPNAG00000012785	ENSPNAG00000012773	nav3 (ENSPNAG00000002385) #12	syt1a (ENSPNAG00000012718) #14	ENSPNAG00000012666	pawr (ENSPNAG00000012658) #16	ppp1r12a (ENSPNAG00000012652) #18	ENSPNAG00000012615	rps16 (ENSPNAG00000002321)	ENSPNAG00000012596	myf6 (ENSPNAG00000012583) #21	myf5 (ENSPNAG00000007179) #22	lin7a (ENSPNAG00000012563) #23	ACSS3 (ENSPNAG00000002283) #25	ppfia2 (ENSPNAG00000006898) #26	ENSPNAG00000002170
Electric eel	MODERN SPECIES	309									ENSEEEG00000014336 #12	ENSEEEG00000014337	syt1a (ENSEEEG00000014338) #14	pawr (ENSEEEG00000014348) #16	ppp1r12a (ENSEEEG00000014354) #18	rps16 (ENSEEEG00000014359)	myf6 (ENSEEEG00000014363) #21	myf5 (ENSEEEG00000014364) #22
Channel catfish	MODERN SPECIES	10	cmah (ENSIPUG00000024591)	ENSIPUG00000024585	krr1 (ENSIPUG00000024581)	phlda1 (ENSIPUG00000024577)	nap1l1 (ENSIPUG00000024567)	OSBPL8 (ENSIPUG00000024546) #7	ZDHHC17 (ENSIPUG00000024530) #9	si:dkey-97m3.1 (ENSIPUG00000024524)	ENSIPUG00000024522	nav3 (ENSIPUG00000024518) #12	SYT1 (ENSIPUG00000024511) #14	ENSIPUG00000024510 #18	pawr (ENSIPUG00000024509) #16	ppp1r12a (ENSIPUG00000024502) #18	rps16 (ENSIPUG00000024494)	myf6 (ENSIPUG00000024490) #22	lin7a (ENSIPUG00000024459) #23	acss3 (ENSIPUG00000024454) #25	ppfia2 (ENSIPUG00000024451) #26	llph (ENSIPUG00000024449)	mdm2 (ENSIPUG00000024445)	slc35e3 (ENSIPUG00000024440)	ENSIPUG00000024351	magi2a (ENSIPUG00000024345)	ENSIPUG00000024341	Gnai1 (ENSIPUG00000024333)	CD36 (ENSIPUG00000024330)	SEMA3C (ENSIPUG00000024327)	ENSIPUG00000024237	ENSIPUG00000024236	ENSIPUG00000024234
Cyprinoidei	ANCESTRAL SPECIES	67									ENSGT00510000047886.b.ib	ENSGT00940000158014 #12	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.b.b.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	94	ENSGT00940000153544.b.f	ENSGT00940000157572.a.a.b	ENSGT00940000155997.lb.a.lb.a	ENSGT00940000158409.ab	ENSGT00940000156127.t	ENSGT00390000017990.a	ENSGT00950000182839.B.a.a.k.a ##35	ENSGT00390000002793.d	ENSGT00510000047886.b.ib.a	ENSGT00940000158014.m #12	ENSGT00940000155394.i.a.a #14	ENSGT00390000000406.k #16	ENSGT00940000156120.a.i #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a.j #21	ENSGT00950000182959.a.a.a #22	ENSGT00940000153222.a.a.y #23	ENSGT00940000157479.j #25	ENSGT01050000244900.a.a.a.a.b.bb.m.b #26	ENSGT00940000165344.e	ENSGT00940000158997.k.b	ENSGT00730000111007.a.a.i	ENSGT00940000164333.d	ENSGT00390000009380.a	ENSGT00990000203541.a.a.a.a.a.e.a	ENSGT00940000157862.i	ENSGT00390000004044.b	ENSGT00940000158039.h.b	ENSGT00940000159379.f	ENSGT00940000153372.A.f.k	ENSGT00940000153567.a.a.b.b.a.a
Goldfish	MODERN SPECIES	21	kiss2 (ENSCARG00000050789)	ldhba (ENSCARG00000050805)	slc25a3a (ENSCARG00000004095)	tmpoa (ENSCARG00000004118)	strap (ENSCARG00000004172)	ETNK1 (ENSCARG00000004230)	sox5 (ENSCARG00000004446)	dnai7 (ENSCARG00000007038)	lrmp (ENSCARG00000007098)	bcat1 (ENSCARG00000007169)	syt1a (ENSCARG00000007182) #14	pawr (ENSCARG00000007222) #16	ppp1r12a (ENSCARG00000007240) #18	RPS16 (ENSCARG00000007629)	myf6 (ENSCARG00000007640) #21	myf5 (ENSCARG00000007648) #22	lin7a (ENSCARG00000007657) #23	ACSS3 (ENSCARG00000007733) #25	ppfia2 (ENSCARG00000008457) #26	llph (ENSCARG00000011062)	hcls1 (ENSCARG00000011091)	GOLGB1 (ENSCARG00000011371)	guca1a (ENSCARG00000011420)	orc5 (ENSCARG00000011442)	lhfpl3 (ENSCARG00000011623)	ENSCARG00000011636	ndufb2 (ENSCARG00000011648)	KDM7A (ENSCARG00000011660)	SEMA3C (ENSCARG00000011766)	cd36 (ENSCARG00000012095)	gnai1 (ENSCARG00000012213)
Cyprininae_a	ANCESTRAL SPECIES	174											ENSGT00940000158014.n #12	ENSGT00940000155394.i.a.b #14	ENSGT00390000000406.l #16	ENSGT00940000156120.a.j #18	ENSGT00950000182959.a.b.b.a.j.b #21	ENSGT00950000182959.a.a.a #22	ENSGT00950000182959.a.b.b.a.i #21	ENSGT00950000182959.a.a.b #22	ENSGT00940000153222.a.a.y #23	ENSGT00940000157479.j #25	ENSGT01050000244900.a.a.a.a.b.bb.m.b #26	ENSGT00940000165344.e	ENSGT00940000158997.k.b	ENSGT00730000111007.a.a.i	ENSGT00940000164333.d	ENSGT00390000009380.a	ENSGT00990000203541.a.a.a.a.a.e.a	ENSGT00940000157862.i	ENSGT00390000004044.b	ENSGT00940000158039.h.b	ENSGT00940000159379.f
Common carp reference	MODERN SPECIES	36	cacna1c (ENSCCRG00000079889)	ENSCCRG00000064902 ##35	ENSCCRG00000076072	ENSCCRG00000024630	ENSCCRG00000025696	ENSCCRG00000038194	ENSCCRG00000003610	ENSCCRG00000082448	ENSCCRG00000075007	nav3 (ENSCCRG00000003878) #12	syt1a (ENSCCRG00000060462) #14	pawr (ENSCCRG00000017856) #16	ppp1r12a (ENSCCRG00000031966) #18	ENSCCRG00000031955	myf6 (ENSCCRG00000052812) #21	myf5 (ENSCCRG00000031947) #22	ENSCCRG00000002290	lin7a (ENSCCRG00000070932) #23	ACSS3 (ENSCCRG00000072702) #25	ppfia2 (ENSCCRG00000070855) #26	llph (ENSCCRG00000057054)	hcls1 (ENSCCRG00000001201)	ENSCCRG00000001214	guca1a (ENSCCRG00000070485)	lhfpl3 (ENSCCRG00000058495)	orc5 (ENSCCRG00000001236)	ENSCCRG00000039177	ndufb2 (ENSCCRG00000072248)	ENSCCRG00000035796	ENSCCRG00000033639	gnai1 (ENSCCRG00000033760)
Golden-line barbel	MODERN SPECIES	7	ENSSGRG00000041165	stk38l (ENSSGRG00000041187)	LRTM2 (ENSSGRG00000041682)	dcp1b (ENSSGRG00000041683)	cacna1c (ENSSGRG00000041723)	ENSSGRG00000041780	napepld (ENSSGRG00000041781)	rassf8b (ENSSGRG00000041783) ##35	ints13 (ENSSGRG00000041790)	ENSSGRG00000041934	nav3 (ENSSGRG00000041936) #12	syt1a (ENSSGRG00000041938) #14	pawr (ENSSGRG00000041965) #16	ppp1r12a (ENSSGRG00000041970) #18	rps16 (ENSSGRG00000042013)	myf5 (ENSSGRG00000042014) #22	lin7a (ENSSGRG00000042025) #23	ACSS3 (ENSSGRG00000042041) #25	ppfia2 (ENSSGRG00000042069) #26	llph (ENSSGRG00000042864)	ENSSGRG00000042867	guca1a (ENSSGRG00000042871)	orc5 (ENSSGRG00000042873)	LHFPL3 (ENSSGRG00000042874)	ENSSGRG00000042875	ENSSGRG00000042879	ndufb2 (ENSSGRG00000042881)	ENSSGRG00000042882	SEMA3C (ENSSGRG00000042887)	cd36 (ENSSGRG00000043071)	gnai1 (ENSSGRG00000043151)
Cyprininae	ANCESTRAL SPECIES	481															ENSGT00950000182959.a.b.b.a.i #21	ENSGT00950000182959.a.a.b #22	ENSGT00940000153222.a.a.z #23	ENSGT00940000157479.i #25	ENSGT01050000244900.a.a.a.a.b.bb.n #26	ENSGT00940000165344.f	ENSGT00940000158997.k.a	ENSGT00730000111007.a.a.j	ENSGT00940000164333.c	ENSGT00390000009380.b	ENSGT00990000203541.a.a.a.a.a.f	ENSGT00990000203541.a.a.a.a.a.e.b	ENSGT00940000157862.j	ENSGT00390000004044.a	ENSGT00940000158039.h.a	ENSGT00940000159379.e	ENSGT00940000153372.A.f.l
Cyprininae_a	ANCESTRAL SPECIES	174									ENSGT00940000158014.n #12	ENSGT00940000155394.i.a.b #14	ENSGT00390000000406.l #16	ENSGT00940000156120.a.j #18	ENSGT00950000182959.a.b.b.a.j.b #21	ENSGT00950000182959.a.a.a #22	ENSGT00950000182959.a.b.b.a.i #21	ENSGT00950000182959.a.a.b #22	ENSGT00940000153222.a.a.y #23	ENSGT00940000157479.j #25	ENSGT01050000244900.a.a.a.a.b.bb.m.b #26	ENSGT00940000165344.e	ENSGT00940000158997.k.b	ENSGT00730000111007.a.a.i	ENSGT00940000164333.d	ENSGT00390000009380.a	ENSGT00990000203541.a.a.a.a.a.e.a	ENSGT00940000157862.i	ENSGT00390000004044.b	ENSGT00940000158039.h.b	ENSGT00940000159379.f	ENSGT00940000153372.A.f.k	ENSGT00940000153567.a.a.b.b.a.a
Golden-line barbel	MODERN SPECIES	717											nav3 (ENSSGRG00000014524) #12	syt1a (ENSSGRG00000015011) #14	pawr (ENSSGRG00000015136) #16	rps16 (ENSSGRG00000015151)	myf6 (ENSSGRG00000015176) #21	myf5 (ENSSGRG00000015178) #22	lin7a (ENSSGRG00000015179) #23	ACSS3 (ENSSGRG00000015180) #25
Goldfish	MODERN SPECIES	33	rassf8b (ENSCARG00000016908) ##35	ints13 (ENSCARG00000016844)	ENSCARG00000016831	ENSCARG00000016819	ENSCARG00000016808	ENSCARG00000016803	ENSCARG00000016796	ENSCARG00000016787	ENSCARG00000016739	nav3 (ENSCARG00000014159) #12	syt1a (ENSCARG00000014000) #14	pawr (ENSCARG00000013984) #16	ppp1r12a (ENSCARG00000013705) #18	rps16 (ENSCARG00000013649)	myf6 (ENSCARG00000013643) #21	myf5 (ENSCARG00000013638) #22	lin7a (ENSCARG00000013634) #23	ENSCARG00000013631	ENSCARG00000013627	ENSCARG00000013625	BRD1 (ENSCARG00000013600)	zbed4 (ENSCARG00000013589)	alg12 (ENSCARG00000013585)	creld2 (ENSCARG00000013490)	ENSCARG00000013472	ENSCARG00000013469	mdm2 (ENSCARG00000013438)	slc35e3 (ENSCARG00000013424)	magi2a (ENSCARG00000010141)	nup107 (ENSCARG00000008124)	gnai1 (ENSCARG00000007987)
Zebrafish	MODERN SPECIES	19	dcp1b (ENSDARG00000045484)	cacna1c (ENSDARG00000008398)	napepld (ENSDARG00000009252)	ints13 (ENSDARG00000011764)	rassf8b (ENSDARG00000045485) ##35	ENSDARG00000055245	ENSDARG00000114678	ENSDARG00000090038	ENSDARG00000090277	nav3 (ENSDARG00000005476) #12	syt1a (ENSDARG00000030614) #14	pawr (ENSDARG00000045486) #16	ppp1r12a (ENSDARG00000010784) #18	rps16 (ENSDARG00000045487)	myf6 (ENSDARG00000029830) #21	myf5 (ENSDARG00000007277) #22	lin7a (ENSDARG00000013414) #23	ACSS3 (ENSDARG00000032218) #25	ppfia2 (ENSDARG00000013000) #26	llph (ENSDARG00000055360)	hcls1 (ENSDARG00000012729)	ENSDARG00000061951	guca1a (ENSDARG00000010454)	orc5 (ENSDARG00000021579)	lhfpl3 (ENSDARG00000021595)	KMT2E (ENSDARG00000007523)	ndufb2 (ENSDARG00000045490)	kdm7aa (ENSDARG00000018111)	SEMA3C (ENSDARG00000034300)	cd36 (ENSDARG00000032639)	gnai1 (ENSDARG00000021647)
Euteleosteomorpha	ANCESTRAL SPECIES	30					ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00990000204681	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00530000063113.A.q	ENSGT00390000006367.c
Acanthomorphata	ANCESTRAL SPECIES	47	ENSGT00950000183052.b.c.b.a	ENSGT00940000158003	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.b.a.a
Euacanthomorphacea	ANCESTRAL SPECIES	18	ENSGT00940000159081	ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.a.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Percomorphaceae	ANCESTRAL SPECIES	19	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Percomorphaceae_B	ANCESTRAL SPECIES	21	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Percomorphaceae_C	ANCESTRAL SPECIES	22	ENSGT00940000172707.b	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Percomorphaceae_D	ANCESTRAL SPECIES	22	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Carangaria	ANCESTRAL SPECIES	22	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Pleuronectoidei	ANCESTRAL SPECIES	16	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT00940000155368	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Turbot	MODERN SPECIES	11	pmch (ENSSMAG00000022672)	igf1 (ENSSMAG00000005115)	ENSSMAG00000030625	ENSSMAG00000005081	btbd11a (ENSSMAG00000005012)	ENSSMAG00000004964	ENSSMAG00000005003	tnnt2c (ENSSMAG00000004942)	ENSSMAG00000004931	ENSSMAG00000004880	ENSSMAG00000004819	ENSSMAG00000004787 #14	ENSSMAG00000004775 #16	ENSSMAG00000032576	myf6 (ENSSMAG00000024612) #21	myf5 (ENSSMAG00000004563) #22	ENSSMAG00000004633 #18	lin7a (ENSSMAG00000004519) #23	ACSS3 (ENSSMAG00000004487) #25	ppfia2 (ENSSMAG00000004417) #26	ENSSMAG00000030237	ENSSMAG00000032625	ENSSMAG00000004385	rhno1 (ENSSMAG00000032963)	ENSSMAG00000004338	ENSSMAG00000004364	ENSSMAG00000004315	ptn (ENSSMAG00000004300)	chrm2a (ENSSMAG00000004285)	mtpn (ENSSMAG00000026919)	ENSSMAG00000004262
Tongue sole	MODERN SPECIES	18	klhl42 (ENSCSEG00000004627)	elapor2b (ENSCSEG00000004623)	tspan9b (ENSCSEG00000004608)	amdhd1 (ENSCSEG00000004613)	cry1a (ENSCSEG00000004597)	MTERF2 (ENSCSEG00000004606)	syt10 (ENSCSEG00000004582)	ENSCSEG00000004570	cyb5r3 (ENSCSEG00000004558)	syt1a (ENSCSEG00000004537) #14	pawr (ENSCSEG00000004529) #16	ppp1r12a (ENSCSEG00000004475) #18	rps16 (ENSCSEG00000004454)	rps16 (ENSCSEG00000004450)	myf6 (ENSCSEG00000004440) #21	myf5 (ENSCSEG00000004433) #22	lin7a (ENSCSEG00000004421) #23	ACSS3 (ENSCSEG00000004396) #25	TMEM19 (ENSCSEG00000004390)	kics2 (ENSCSEG00000004388)	srgap1b (ENSCSEG00000004374)	AVPR1A (ENSCSEG00000004367)	acot14 (ENSCSEG00000004355)	ENSCSEG00000004343	ENSCSEG00000004334	cwf19l1 (ENSCSEG00000004325)	dmtf1 (ENSCSEG00000004319)	tmem243b (ENSCSEG00000004311)	meig1 (ENSCSEG00000004307)	dclre1c (ENSCSEG00000004303)	cpm (ENSCSEG00000004301)
Carangaria_A	ANCESTRAL SPECIES	21	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Barramundi perch	MODERN SPECIES	34	hmgcrb (ENSLCAG00010003972)	CERT1 (ENSLCAG00010003603)	SV2C (ENSLCAG00010003544)	F2RL2 (ENSLCAG00010003542)	f2r2.1 (ENSLCAG00010003537)	f2rl1.1 (ENSLCAG00010003533)	f2rl1.2 (ENSLCAG00010003531)	ch25hl2 (ENSLCAG00010003527)	ENSLCAG00010003294	cyb5r3 (ENSLCAG00010003205)	syt1a (ENSLCAG00010003197) #14	pawr (ENSLCAG00010003184) #16	ppp1r12a (ENSLCAG00010003115) #18	rps16 (ENSLCAG00010003081)	myf6 (ENSLCAG00010003076) #21	myf5 (ENSLCAG00010003070) #22	lin7a (ENSLCAG00010003066) #23	ACSS3 (ENSLCAG00010003060) #25
Seriola	ANCESTRAL SPECIES	9	ENSGT00730000111164	ENSGT00390000012080	ENSGT00530000063539.b	ENSGT01020000230394.e.a.a.a.a.b	ENSGT00940000156680.b	ENSGT00990000203615.a.a.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b.c	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Yellowtail amberjack	MODERN SPECIES	2908								ENSSLDG00000019169	cyb5r3 (ENSSLDG00000019154)	syt1a (ENSSLDG00000019130) #14	pawr (ENSSLDG00000019114) #16	ENSSLDG00000019080 #18	ppp1r12a (ENSSLDG00000019041) #18	rps16 (ENSSLDG00000019014)	myf6 (ENSSLDG00000018996) #21	myf5 (ENSSLDG00000018969) #22	lin7a (ENSSLDG00000018950) #23	ACSS3 (ENSSLDG00000018882) #25	ppfia2 (ENSSLDG00000018811) #26	ENSSLDG00000018758	ENSSLDG00000018608	foxm1 (ENSSLDG00000018534)	rhno1 (ENSSLDG00000018518)	TULP3 (ENSSLDG00000018502)	ENSSLDG00000018485	ptn (ENSSLDG00000018471)	chrm2a (ENSSLDG00000018456)	mtpn (ENSSLDG00000018435)	ENSSLDG00000018423	ENSSLDG00000018412	SEMA3C (ENSSLDG00000018375)
Greater amberjack	MODERN SPECIES	60	UPF2 (ENSSDUG00000017244)	slc35e3 (ENSSDUG00000017364)	nup107 (ENSSDUG00000017402)	mdm2 (ENSSDUG00000017495)	plxnb2a.1 (ENSSDUG00000017517)	abcc9 (ENSSDUG00000017622)	kcnj8 (ENSSDUG00000017965)	syt10 (ENSSDUG00000018002)	ENSSDUG00000018031	cyb5r3 (ENSSDUG00000018106)	syt1a (ENSSDUG00000018131) #14	pawr (ENSSDUG00000018156) #16	ppp1r12a (ENSSDUG00000018184) #18	rps16 (ENSSDUG00000018274)	myf6 (ENSSDUG00000018309) #21	myf5 (ENSSDUG00000018287) #22	lin7a (ENSSDUG00000018320) #23	ACSS3 (ENSSDUG00000018359) #25	ppfia2 (ENSSDUG00000018476) #26	ENSSDUG00000018657	foxm1 (ENSSDUG00000018732)	rhno1 (ENSSDUG00000018757)	TULP3 (ENSSDUG00000018775)	ENSSDUG00000018796	ENSSDUG00000018819	ptn (ENSSDUG00000018862)	ENSSDUG00000018870	chrm2a (ENSSDUG00000018876)	mtpn (ENSSDUG00000018885)	ENSSDUG00000018905	ENSSDUG00000018914
Anabantaria	ANCESTRAL SPECIES	21	ENSGT00940000159081	ENSGT00940000163513	ENSGT00950000183169.A.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Zig-zag eel	MODERN SPECIES	15	pmch (ENSMAMG00000015727)	igf1 (ENSMAMG00000015704)	ENSMAMG00000015670	btbd11a (ENSMAMG00000015616)	ENSMAMG00000015580	tnnt2c (ENSMAMG00000015546)	ENSMAMG00000015509	ENSMAMG00000024270	ENSMAMG00000015433	ENSMAMG00000015393	ENSMAMG00000015373 #14	ENSMAMG00000015337 #16	ppp1r12a (ENSMAMG00000015240) #18	ENSMAMG00000015224	myf6 (ENSMAMG00000015217) #21	myf5 (ENSMAMG00000015202) #22	lin7a (ENSMAMG00000015174) #23	ACSS3 (ENSMAMG00000015114) #25	ppfia2 (ENSMAMG00000014966) #26	ENSMAMG00000014909	ENSMAMG00000014899	rhno1 (ENSMAMG00000014885)	ENSMAMG00000014877	ENSMAMG00000014845	ptn (ENSMAMG00000014825)	chrm2a (ENSMAMG00000025277)	mtpn (ENSMAMG00000014764)	ENSMAMG00000014753	ENSMAMG00000014716	ENSMAMG00000014241	ENSMAMG00000014171
Anabantoidei	ANCESTRAL SPECIES	21	ENSGT00940000159081	ENSGT00940000163513	ENSGT00950000183169.A.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000157779	ENSGT00940000158580	ENSGT01040000240400.c.a.b.a.a.d.a.b.b	ENSGT00940000155878	ENSGT00940000168658	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT01040000240400.c.a.b.a.a.d.a.b.a	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985
Climbing perch	MODERN SPECIES	14	igf1 (ENSATEG00000023026)	ENSATEG00000023044	ENSATEG00000029039	btbd11a (ENSATEG00000023064)	ENSATEG00000023083	tnnt2c (ENSATEG00000023096)	ENSATEG00000023107	ENSATEG00000026602	ENSATEG00000023121	ENSATEG00000023152	ENSATEG00000023170 #14	ENSATEG00000023210 #16	ENSATEG00000023226 #18	ENSATEG00000023236	myf6 (ENSATEG00000023242) #21	myf5 (ENSATEG00000023249) #22	lin7a (ENSATEG00000023252) #23	ACSS3 (ENSATEG00000023260) #25	ppfia2 (ENSATEG00000023284) #26	ENSATEG00000023298	ENSATEG00000025485	ENSATEG00000023308	ENSATEG00000023314	ENSATEG00000023329	ENSATEG00000023340	ENSATEG00000023343	ENSATEG00000029926	ENSATEG00000028577	ENSATEG00000023359	dyrk2 (ENSATEG00000023365)	ENSATEG00000023375
Siamese fighting fish	MODERN SPECIES	20	nup37 (ENSBSLG00000006190)	parpbp (ENSBSLG00000006209)	pmch (ENSBSLG00000006216)	igf1 (ENSBSLG00000006224)	ENSBSLG00000006232	btbd11a (ENSBSLG00000006250)	cry1a (ENSBSLG00000007173)	syt10 (ENSBSLG00000007302)	ENSBSLG00000007321	cyb5r3 (ENSBSLG00000007400)	syt1a (ENSBSLG00000007799) #14	pawr (ENSBSLG00000007919) #16	ppp1r12a (ENSBSLG00000007997) #18	rps16 (ENSBSLG00000008793)	myf6 (ENSBSLG00000008938) #21	myf5 (ENSBSLG00000008998) #22	LIN7B (ENSBSLG00000009073) ##23	ACSS3 (ENSBSLG00000009122) #25	ppfia2 (ENSBSLG00000009838) #26	dclre1c (ENSBSLG00000010562)	cpm (ENSBSLG00000010758)	ENSBSLG00000010788	TRHDE (ENSBSLG00000010858)	ENSBSLG00000011190	ENSBSLG00000011210	ENSBSLG00000011225	ENSBSLG00000011241	dyrk2 (ENSBSLG00000011249)	ENSBSLG00000011257	ENSBSLG00000011261	ENSBSLG00000011268
Eupercaria	ANCESTRAL SPECIES	21	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Tetraodontidae	ANCESTRAL SPECIES	17	ENSGT00390000006747	ENSGT00950000183117.a.a	ENSGT00940000158254	ENSGT00940000155067.b.a	ENSGT00940000155067.a	ENSGT00390000002730.e.b	ENSGT00950000183113.b.b.c.b	ENSGT00940000160161.e.a	ENSGT00940000153414.A	ENSGT00940000157821.h.a	ENSGT00940000160821	ENSGT00940000163946.a	ENSGT00940000155180.b.b	ENSGT00940000165907	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479.f #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00390000006367.c	ENSGT00940000155057.wb	ENSGT00940000153567.a.a.a	ENSGT00940000153372.A.f	ENSGT00940000159379	ENSGT00940000168487	ENSGT00940000158940.a	ENSGT00390000007640.a	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00940000158155	ENSGT00730000112347	ENSGT00940000158804
Fugu	MODERN SPECIES	9	gnptab (ENSTRUG00000012120)	chpt1 (ENSTRUG00000011969)	mybpc1 (ENSTRUG00000011461)	ENSTRUG00000031004	spic (ENSTRUG00000011424)	atp6v1e1b (ENSTRUG00000011314)	ADA2 (ENSTRUG00000011247)	GALNT8 (ENSTRUG00000011109)	rad51ap1 (ENSTRUG00000024004)	fgf6b (ENSTRUG00000011078)	fgf23 (ENSTRUG00000011062)	tigarb (ENSTRUG00000011015)	ccnd2b (ENSTRUG00000010895)	ENSTRUG00000010878	myf6 (ENSTRUG00000010842) #21	myf5 (ENSTRUG00000010781) #22	lin7a (ENSTRUG00000010674) #23	ACSS3 (ENSTRUG00000010633) #25	ppfia2 (ENSTRUG00000016246) #26	si:dkey-97m3.1 (ENSTRUG00000016219)	ENSTRUG00000016140	ENSTRUG00000016110	SEMA3C (ENSTRUG00000015957)	mtpn (ENSTRUG00000030378)	chrm2a (ENSTRUG00000020657)	ptn (ENSTRUG00000015924)	ENSTRUG00000015891	ENSTRUG00000029244	TULP3 (ENSTRUG00000015873)	rhno1 (ENSTRUG00000022380)	foxm1 (ENSTRUG00000015839)
Tetraodon	MODERN SPECIES	11	ENSTNIG00000011419	washc3 (ENSTNIG00000011417)	dram1 (ENSTNIG00000001389)	gnptab (ENSTNIG00000011416)	chpt1 (ENSTNIG00000011415)	mybpc1 (ENSTNIG00000011414)	spic (ENSTNIG00000000056)	atp6v1e1b (ENSTNIG00000011413)	ADA2 (ENSTNIG00000011412)	fgf6b (ENSTNIG00000011411)	fgf23 (ENSTNIG00000011410)	tigarb (ENSTNIG00000001586)	CCND2 (ENSTNIG00000011409)	ENSTNIG00000011408	myf6 (ENSTNIG00000011407) #21	myf5 (ENSTNIG00000011406) #22	LIN7B (ENSTNIG00000011405) ##23	ENSTNIG00000000595 #25	ppfia2 (ENSTNIG00000011404) #26	si:dkey-97m3.1 (ENSTNIG00000011403)	ENSTNIG00000011402	ENSTNIG00000011401	cd36 (ENSTNIG00000011400)	SEMA3C (ENSTNIG00000011399)	ENSTNIG00000011398	chrm2a (ENSTNIG00000011397)	ptn (ENSTNIG00000011396)	ENSTNIG00000002223	foxm1 (ENSTNIG00000011394)	ENSTNIG00000011393	ergic2 (ENSTNIG00000011392)
Eupecaria_A	ANCESTRAL SPECIES	21	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Ballan wrasse	MODERN SPECIES	288	ENSLBEG00000021449	ttll1 (ENSLBEG00000021464)	pacsin2 (ENSLBEG00000021510)	arfgap3 (ENSLBEG00000021563)	IKBIP (ENSLBEG00000021638)	ENSLBEG00000021657	tnnt2c (ENSLBEG00000021670)	syt10 (ENSLBEG00000021731)	ENSLBEG00000021784	cyb5r3 (ENSLBEG00000021856)	syt1a (ENSLBEG00000021895) #14	pawr (ENSLBEG00000021925) #16	ppp1r12a (ENSLBEG00000021962) #18	rps16 (ENSLBEG00000022009)	myf6 (ENSLBEG00000022039) #21	myf5 (ENSLBEG00000022115) #22	lin7a (ENSLBEG00000022140) #23	ACSS3 (ENSLBEG00000022189) #25
Eupecaria_B	ANCESTRAL SPECIES	21	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Perciformes	ANCESTRAL SPECIES	18	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Cottioidei	ANCESTRAL SPECIES	19	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT00980000202035	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Lumpfish	MODERN SPECIES	15	ENSCLMG00005010584	ENSCLMG00005022740	FUT9 (ENSCLMG00005022735)	tcp11l2 (ENSCLMG00005022733)	ppp1r12a (ENSCLMG00005022725) #18	pawr (ENSCLMG00005022721) #16	ENSCLMG00005022719	syt1a (ENSCLMG00005022718) #14	cyb5r3 (ENSCLMG00005022705)	ENSCLMG00005022685	ENSCLMG00005022678	syt10 (ENSCLMG00005022677)	tnnt2c (ENSCLMG00005022676)	rps16 (ENSCLMG00005022675)	myf6 (ENSCLMG00005022674) #21	myf5 (ENSCLMG00005022673) #22	lin7a (ENSCLMG00005022672) #23	ACSS3 (ENSCLMG00005022661) #25	ppfia2 (ENSCLMG00005022654) #26	ENSCLMG00005022642	foxm1 (ENSCLMG00005022640)	rhno1 (ENSCLMG00005022638)	TULP3 (ENSCLMG00005022637)	ENSCLMG00005022636	ENSCLMG00005022635	ptn (ENSCLMG00005022634)	chrm2a (ENSCLMG00005022632)	mtpn (ENSCLMG00005022629)	ENSCLMG00005022627	SEMA3C (ENSCLMG00005022619)	cd36 (ENSCLMG00005022530)
Perciformes_a	ANCESTRAL SPECIES	19	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Channel bull blenny	MODERN SPECIES	15	TMCC3 (ENSCGOG00000022948)	eri1 (ENSCGOG00000022952)	LAMB1 (ENSCGOG00000022966)	dclre1c (ENSCGOG00000023371)	meig1 (ENSCGOG00000023503)	tmem243b (ENSCGOG00000023504)	tnnt2c (ENSCGOG00000002697)	syt10 (ENSCGOG00000002710)	ENSCGOG00000002901	cyb5r3 (ENSCGOG00000005612)	syt1a (ENSCGOG00000005760) #14	pawr (ENSCGOG00000005900) #16	ppp1r12a (ENSCGOG00000005924) #18	rps16 (ENSCGOG00000006422)	myf6 (ENSCGOG00000006445) #21	myf5 (ENSCGOG00000006451) #22	lin7a (ENSCGOG00000006454) #23	ACSS3 (ENSCGOG00000006462) #25	ppfia2 (ENSCGOG00000006725) #26	ENSCGOG00000011470	foxm1 (ENSCGOG00000012088)	rhno1 (ENSCGOG00000012090)	TULP3 (ENSCGOG00000012093)	ENSCGOG00000012109	ptn (ENSCGOG00000012115)	chrm2a (ENSCGOG00000012120)	mtpn (ENSCGOG00000012123)	ENSCGOG00000012127	SEMA3C (ENSCGOG00000012145)	cd36 (ENSCGOG00000012920)	ENSCGOG00000013774
Pike perch	MODERN SPECIES	28	pmch (ENSSLUG00000005227)	IGF-I (ENSSLUG00000004805)	ENSSLUG00000004758	btbd11a (ENSSLUG00000004616)	cry1a (ENSSLUG00000003675)	MTERF2 (ENSSLUG00000003583)	syt10 (ENSSLUG00000003569)	ENSSLUG00000003558	ENSSLUG00000002793	cyb5r3 (ENSSLUG00000002598)	syt1a (ENSSLUG00000002503) #14	pawr (ENSSLUG00000002488) #16	ppp1r12a (ENSSLUG00000002356) #18	rps16 (ENSSLUG00000002321)	myf6 (ENSSLUG00000002312) #21	Myf5 (ENSSLUG00000002308) #22	lin7a (ENSSLUG00000002301) #23	ACSS3 (ENSSLUG00000001953) #25	ppfia2 (ENSSLUG00000001812) #26	ENSSLUG00000001721	washc3 (ENSSLUG00000001679)	dram1 (ENSSLUG00000001669)	gnptab (ENSSLUG00000001622)	chpt1 (ENSSLUG00000020879)	mybpc1 (ENSSLUG00000018517)	ENSSLUG00000018418	spic (ENSSLUG00000018413)	atp6v1e1b (ENSSLUG00000018403)	ADA2 (ENSSLUG00000018400)	GALNT8 (ENSSLUG00000018206)	rad51ap1 (ENSSLUG00000018171)
Eupecaria_C	ANCESTRAL SPECIES	18	ENSGT01100000263491.a.b.a.a.a.a.b.s.b	ENSGT00400000022326.b.a.b.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT00980000202035	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Gilthead seabream	MODERN SPECIES	5	pmch (ENSSAUG00010015234)	igf1 (ENSSAUG00010015109)	ENSSAUG00010015101	btbd11a (ENSSAUG00010014766)	cry1a (ENSSAUG00010012268)	ENSSAUG00010012243	tnnt2c (ENSSAUG00010012240)	syt10 (ENSSAUG00010012236)	ENSSAUG00010020501	cyb5r3 (ENSSAUG00010020421)	syt1a (ENSSAUG00010020377) #14	pawr (ENSSAUG00010020373) #16	ppp1r12a (ENSSAUG00010020166) #18	rps16 (ENSSAUG00010020153)	myf6 (ENSSAUG00010020152) #21	myf5 (ENSSAUG00010020150) #22	lin7a (ENSSAUG00010020149) #23	ACSS3 (ENSSAUG00010019831) #25	ppfia2 (ENSSAUG00010017685) #26	ENSSAUG00010017530	foxm1 (ENSSAUG00010017515)	rhno1 (ENSSAUG00010017512)	ENSSAUG00010017509	TULP3 (ENSSAUG00010017500)	ENSSAUG00010017491	ENSSAUG00010017488	ENSSAUG00010017483	ENSSAUG00010017479	ENSSAUG00010017476	ptn (ENSSAUG00010017470)	chrm2a (ENSSAUG00010017466)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	22	ENSGT01100000263491.a.b.a.a.a.a.b.s.b	ENSGT00400000022326.b.a.b.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Large yellow croaker	MODERN SPECIES	491	btbd11a (ENSLCRG00005017547)	cry1a (ENSLCRG00005017690)	MTERF2 (ENSLCRG00005017798)	tnnt2c (ENSLCRG00005017799)	syt10 (ENSLCRG00005017801)	ENSLCRG00005017806	cyb5r3 (ENSLCRG00005017871)	syt1a (ENSLCRG00005018056) #14	ENSLCRG00005018060	ENSLCRG00005018062	pawr (ENSLCRG00005018063) #16	ENSLCRG00005018065	ppp1r12a (ENSLCRG00005018071) #18	rps16 (ENSLCRG00005018085)	myf6 (ENSLCRG00005018091) #21	myf5 (ENSLCRG00005018093) #22	lin7a (ENSLCRG00005018096) #23	ACSS3 (ENSLCRG00005018098) #25	ppfia2 (ENSLCRG00005018255) #26	ENSLCRG00005019228	foxm1 (ENSLCRG00005019230)	rhno1 (ENSLCRG00005019231)	TULP3 (ENSLCRG00005019232)	ENSLCRG00005019233	ENSLCRG00005019241	eri1 (ENSLCRG00005019243)	dclre1c (ENSLCRG00005019246)	meig1 (ENSLCRG00005019249)	tmem243b (ENSLCRG00005010956)	ENSLCRG00005010957	ENSLCRG00005010958
European seabass	MODERN SPECIES	23	pah (ENSDLAG00005022732)	ENSDLAG00005022698	ENSDLAG00005027036	ENSDLAG00005022693	ENSDLAG00005022472	ENSDLAG00005022457	ENSDLAG00005022452	ENSDLAG00005022430	ENSDLAG00005022300	ENSDLAG00005022253	ENSDLAG00005022245 #14	PAWR (ENSDLAG00005022241) #16	ppp1r12a (ENSDLAG00005028115) #18	ENSDLAG00005022222	myf6 (ENSDLAG00005034355) #21	myf5 (ENSDLAG00005022213) #22	lin7a (ENSDLAG00005031546) #23	ACSS3 (ENSDLAG00005021975) #25	ppfia2 (ENSDLAG00005020955) #26	ENSDLAG00005020737	ENSDLAG00005020722	ENSDLAG00005020708	ENSDLAG00005028213	ptn (ENSDLAG00005020678)	chrm2a (ENSDLAG00005032814)	mtpn (ENSDLAG00005027317)	ENSDLAG00005026666	ENSDLAG00005020518	CD36 (ENSDLAG00005020211)	ENSDLAG00005020099	ENSDLAG00005019967
Ovalentaria	ANCESTRAL SPECIES	22	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Ovalentaria_B	ANCESTRAL SPECIES	23	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Pomacentridae	ANCESTRAL SPECIES	59	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00530000063817.b.b	ENSGT00940000155455.g	ENSGT00940000156419.b	ENSGT00940000154709.a.a	ENSGT00940000158899.bb.b	ENSGT00940000158899.cb	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Pomacentridae_A	ANCESTRAL SPECIES	58	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00530000063817.b.b	ENSGT00940000155455.g	ENSGT00940000156419.b	ENSGT00940000154709.a.a	ENSGT00940000158899.cb	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Amphiprion	ANCESTRAL SPECIES	19	ENSGT00940000168896	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00530000063817.b.b	ENSGT00940000155455.g	ENSGT00940000156419.b	ENSGT00940000154709.a.a	ENSGT00940000158899.cb	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Orange clownfish	MODERN SPECIES	13	ENSAPEG00000021659	igf1 (ENSAPEG00000021610)	ENSAPEG00000021575	ENSAPEG00000021556	cry1a (ENSAPEG00000021519)	btbd11a (ENSAPEG00000021482)	tnnt2c (ENSAPEG00000021437)	syt10 (ENSAPEG00000021420)	ENSAPEG00000021411	cyb5r3 (ENSAPEG00000021367)	syt1a (ENSAPEG00000021322) #14	pawr (ENSAPEG00000021309) #16	ppp1r12a (ENSAPEG00000021244) #18	rps16 (ENSAPEG00000021214)	myf6 (ENSAPEG00000021158) #21	myf5 (ENSAPEG00000021137) #22	lin7a (ENSAPEG00000021115) #23	ACSS3 (ENSAPEG00000021054) #25	ppfia2 (ENSAPEG00000020985) #26	ENSAPEG00000020865	foxm1 (ENSAPEG00000020793)	rhno1 (ENSAPEG00000020771)	TULP3 (ENSAPEG00000020752)	ENSAPEG00000020727	ENSAPEG00000020705	ptn (ENSAPEG00000020677)	chrm2a (ENSAPEG00000020661)	mtpn (ENSAPEG00000020630)	ENSAPEG00000020602	SEMA3C (ENSAPEG00000020577)	cd36 (ENSAPEG00000020487)
Spiny chromis	MODERN SPECIES	1975														rps16 (ENSAPOG00000018869)	myf6 (ENSAPOG00000018965) #21	myf5 (ENSAPOG00000018995) #22	lin7a (ENSAPOG00000019025) #23	ACSS3 (ENSAPOG00000019111) #25
Bicolor damselfish	MODERN SPECIES	310											syt1a (ENSSPAG00000007874) #14	pawr (ENSSPAG00000007892) #16	ppp1r12a (ENSSPAG00000007917) #18	rps16 (ENSSPAG00000008089)	myf6 (ENSSPAG00000008107) #21	myf5 (ENSSPAG00000008117) #22	lin7a (ENSSPAG00000008137) #23	ACSS3 (ENSSPAG00000008160) #25	ppfia2 (ENSSPAG00000008238) #26	ENSSPAG00000008316	foxm1 (ENSSPAG00000008351)	rhno1 (ENSSPAG00000008397)	TULP3 (ENSSPAG00000008407)	ENSSPAG00000008458	ENSSPAG00000008474	ptn (ENSSPAG00000008499)	chrm2a (ENSSPAG00000008507)
Cichlidae	ANCESTRAL SPECIES	24	ENSGT00940000159081	ENSGT00940000172707.b	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093.i	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	21	ENSGT00940000159081	ENSGT00940000172707.b	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093.i	ENSGT00940000158804.m	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	10	ENSGT00940000159081	ENSGT00940000172707.b	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093.i	ENSGT00940000158804.n	ENSGT00940000158804.m	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Haplochromini	ANCESTRAL SPECIES	9	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093.i	ENSGT00940000158804.n.b	ENSGT00940000158804.m	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Burton s mouthbrooder	MODERN SPECIES	326									ENSHBUG00000012255	cyb5r3 (ENSHBUG00000012236)	syt1a (ENSHBUG00000012192) #14	pawr (ENSHBUG00000012169) #16	ENSHBUG00000012146	rps16 (ENSHBUG00000011868)	myf6 (ENSHBUG00000011840) #21	myf5 (ENSHBUG00000011829) #22	lin7a (ENSHBUG00000000328) #23	ACSS3 (ENSHBUG00000011792) #25	ppfia2 (ENSHBUG00000011753) #26	ENSHBUG00000011518	foxm1 (ENSHBUG00000011509)	rhno1 (ENSHBUG00000011503)	foxm1 (ENSHBUG00000011493)	TULP3 (ENSHBUG00000011480)	ENSHBUG00000011412	ENSHBUG00000011400	ptn (ENSHBUG00000011360)	chrm2a (ENSHBUG00000011351)	mtpn (ENSHBUG00000011342)	ENSHBUG00000011331	SEMA3C (ENSHBUG00000011319)
Haplochromini_A	ANCESTRAL SPECIES	9	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093.i	ENSGT00940000158804.n.b	ENSGT00940000158804.m	ENSGT00730000112347	ENSGT00940000158155	ENSGT00940000155368.ab.a	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379
P. nyererei	MODERN SPECIES	399									ENSPNYG00000018682	cyb5r3 (ENSPNYG00000018648)	syt1a (ENSPNYG00000018615) #14	pawr (ENSPNYG00000018605) #16	ppp1r12a (ENSPNYG00000018399) #18	rps16 (ENSPNYG00000018328)	myf6 (ENSPNYG00000018314) #21	myf5 (ENSPNYG00000018301) #22	lin7a (ENSPNYG00000018284) #23	ACSS3 (ENSPNYG00000018233) #25	ppfia2 (ENSPNYG00000018167) #26	ENSPNYG00000018091	foxm1 (ENSPNYG00000018069)	rhno1 (ENSPNYG00000018048)	TULP3 (ENSPNYG00000018015)	ENSPNYG00000018003	ENSPNYG00000017991	ptn (ENSPNYG00000017983)	chrm2a (ENSPNYG00000017969)	mtpn (ENSPNYG00000017967)	ENSPNYG00000017958	SEMA3C (ENSPNYG00000017904)	cd36 (ENSPNYG00000017687)
Haplochromini_B	ANCESTRAL SPECIES	11	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000158804.n.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093.i	ENSGT00940000158804.n.b	ENSGT00940000158804.m	ENSGT00730000112347	ENSGT00940000158155	ENSGT00940000155368.ab.a	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379
Zebra mbuna	MODERN SPECIES	1099	pmch (ENSMZEG00005001251)	igf1 (ENSMZEG00005001284)	ENSMZEG00005001313	btbd11a (ENSMZEG00005001355)	cry1a (ENSMZEG00005001451)	MTERF2 (ENSMZEG00005001466)	syt10 (ENSMZEG00005001603)	ENSMZEG00005001628	cyb5r3 (ENSMZEG00005001636)	syt1a (ENSMZEG00005001660) #14	pawr (ENSMZEG00005001704) #16	ppp1r12a (ENSMZEG00005001744) #18	foxm1 (ENSMZEG00005001943)	rps16 (ENSMZEG00005001975)	myf6 (ENSMZEG00005001995) #21	myf5 (ENSMZEG00005002005) #22	lin7a (ENSMZEG00005002013) #23	ACSS3 (ENSMZEG00005002036) #25	ppfia2 (ENSMZEG00005002099) #26	ENSMZEG00005002179	foxm1 (ENSMZEG00005002229)	foxm1 (ENSMZEG00005002268)	rhno1 (ENSMZEG00005002308)	TULP3 (ENSMZEG00005002320)	ENSMZEG00005002354	ENSMZEG00005002378	opn5 (ENSMZEG00005002393)	ENSMZEG00005002407	cd2ap (ENSMZEG00005002420)	tnfrsf21 (ENSMZEG00005002452)	ENSMZEG00005002465
Eastern happy	MODERN SPECIES	8	pmch (ENSACLG00000016802)	igf1 (ENSACLG00000016815)	ENSACLG00000016841	btbd11a (ENSACLG00000016936)	cry1a (ENSACLG00000017110)	MTERF2 (ENSACLG00000017181)	syt10 (ENSACLG00000017353)	ENSACLG00000017416	cyb5r3 (ENSACLG00000017472)	syt1a (ENSACLG00000017513) #14	pawr (ENSACLG00000017548) #16	ppp1r12a (ENSACLG00000017614) #18	foxm1 (ENSACLG00000017856)	rps16 (ENSACLG00000017963)	myf6 (ENSACLG00000017983) #21	myf5 (ENSACLG00000017991) #22	lin7a (ENSACLG00000018011) #23	ACSS3 (ENSACLG00000018059) #25	ppfia2 (ENSACLG00000018429) #26	ENSACLG00000018723	foxm1 (ENSACLG00000018814)	foxm1 (ENSACLG00000018922)	rhno1 (ENSACLG00000018940)	TULP3 (ENSACLG00000018961)	ENSACLG00000019033	ENSACLG00000019049	ptn (ENSACLG00000019074)	chrm2a (ENSACLG00000019090)	mtpn (ENSACLG00000019115)	ENSACLG00000019126	SEMA3C (ENSACLG00000019139)
Lyretail cichlid	MODERN SPECIES	291	btbd11a (ENSNBRG00000010944)	ENSNBRG00000010937	MTERF2 (ENSNBRG00000010933)	cry1a (ENSNBRG00000010898)	tnnt2c (ENSNBRG00000010879)	syt10 (ENSNBRG00000010856)	ENSNBRG00000010848	ENSNBRG00000010794	cyb5r3 (ENSNBRG00000010756)	syt1a (ENSNBRG00000010739) #14	pawr (ENSNBRG00000010725) #16	ppp1r12a (ENSNBRG00000010670) #18	ENSNBRG00000010659	rps16 (ENSNBRG00000010637)	myf6 (ENSNBRG00000010629) #21	myf5 (ENSNBRG00000010621) #22	lin7a (ENSNBRG00000010602) #23	ENSNBRG00000010588	ACSS3 (ENSNBRG00000010540) #25	ppfia2 (ENSNBRG00000010460) #26	ENSNBRG00000010443	foxm1 (ENSNBRG00000010396)	ENSNBRG00000010385	TULP3 (ENSNBRG00000010353)	ENSNBRG00000010331	ENSNBRG00000010318	ptn (ENSNBRG00000010305)	chrm2a (ENSNBRG00000010300)	mtpn (ENSNBRG00000010292)	ENSNBRG00000010278	SEMA3C (ENSNBRG00000010236)
Nile tilapia	MODERN SPECIES	8	ENSONIG00000017799	btbd11a (ENSONIG00000017796)	cry1a (ENSONIG00000000075)	MTERF2 (ENSONIG00000020695)	tnnt2c (ENSONIG00000020696)	ENSONIG00000000001	syt10 (ENSONIG00000000002)	syt1a (ENSONIG00000000003) #14	pawr (ENSONIG00000028232) #16	ppp1r12a (ENSONIG00000000005) #18	foxm1 (ENSONIG00000027574)	foxm1 (ENSONIG00000000082)	ENSONIG00000031149	rps16 (ENSONIG00000000006)	myf6 (ENSONIG00000000007) #21	myf5 (ENSONIG00000038625) #22	lin7a (ENSONIG00000000078) #23	ACSS3 (ENSONIG00000000079) #25	ppfia2 (ENSONIG00000000080) #26	ENSONIG00000000081	foxm1 (ENSONIG00000042685)	rhno1 (ENSONIG00000000083)	TULP3 (ENSONIG00000000084)	ENSONIG00000030976	ENSONIG00000000085	ptn (ENSONIG00000000086)	chrm2a (ENSONIG00000020697)	ENSONIG00000030324	mtpn (ENSONIG00000041390)	ENSONIG00000000088	SEMA3C (ENSONIG00000000089)
Midas cichlid	MODERN SPECIES	1331												pawr (ENSACIG00000013438) #16	ppp1r12a (ENSACIG00000013397) #18	rps16 (ENSACIG00000013386)	myf6 (ENSACIG00000013331) #21	myf5 (ENSACIG00000013314) #22	lin7a (ENSACIG00000013298) #23	ACSS3 (ENSACIG00000013258) #25	ppfia2 (ENSACIG00000013195) #26	ENSACIG00000013105
Atherinomorphae	ANCESTRAL SPECIES	21	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Oryzias	ANCESTRAL SPECIES	20	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g.c	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a.d #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Oryzias_b	ANCESTRAL SPECIES	19	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g.c	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a.d #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Javanese ricefish	MODERN SPECIES	15	ENSOJAG00000023539	igf1 (ENSOJAG00000023545)	ENSOJAG00000023553	btbd11a (ENSOJAG00000023574)	ENSOJAG00000023593	ENSOJAG00000023595	cry1a (ENSOJAG00000023629)	MTERF2 (ENSOJAG00000023694)	syt10 (ENSOJAG00000023697)	ENSOJAG00000023700	syt1a (ENSOJAG00000023710) #14	pawr (ENSOJAG00000023718) #16	ppp1r12a (ENSOJAG00000023721) #18	rps16 (ENSOJAG00000023733)	myf6 (ENSOJAG00000023735) #21	myf5 (ENSOJAG00000023736) #22	lin7a (ENSOJAG00000023737) #23	ACSS3 (ENSOJAG00000023742) #25	ppfia2 (ENSOJAG00000023762) #26	foxm1 (ENSOJAG00000023805)	ENSOJAG00000023806	ENSOJAG00000023808	ENSOJAG00000023813	ptn (ENSOJAG00000023820)	chrm2a (ENSOJAG00000023822)	ENSOJAG00000023823	ENSOJAG00000023825	ENSOJAG00000014770	nup50 (ENSOJAG00000014777)	kiaa0930 (ENSOJAG00000014799)	fbxo7 (ENSOJAG00000014895)
Indian medaka	MODERN SPECIES	2	ENSOMEG00000003411	igf1 (ENSOMEG00000003424)	ENSOMEG00000003451	btbd11a (ENSOMEG00000003530)	cry1a (ENSOMEG00000003568)	ENSOMEG00000003581	tnnt2c (ENSOMEG00000003593)	syt10 (ENSOMEG00000003610)	ENSOMEG00000003669	cyb5r3 (ENSOMEG00000003698)	syt1a (ENSOMEG00000003714) #14	pawr (ENSOMEG00000003730) #16	ppp1r12a (ENSOMEG00000003801) #18	rps16 (ENSOMEG00000003840)	myf6 (ENSOMEG00000003855) #21	myf5 (ENSOMEG00000003862) #22	lin7a (ENSOMEG00000003884) #23	ACSS3 (ENSOMEG00000003964) #25	ppfia2 (ENSOMEG00000004094) #26	ENSOMEG00000004125	foxm1 (ENSOMEG00000004150)	ENSOMEG00000004155	TULP3 (ENSOMEG00000004185)	ENSOMEG00000004208	ptn (ENSOMEG00000000096)	chrm2a (ENSOMEG00000000098)	ENSOMEG00000004244	ENSOMEG00000004249	ENSOMEG00000004254	SEMA3C (ENSOMEG00000004303)	cd36 (ENSOMEG00000004403)
Oryzias_a	ANCESTRAL SPECIES	15	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g.c	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a.d #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.k.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	52												pawr (ENSOSIG00000003677) #16	ppp1r12a (ENSOSIG00000003628) #18	rps16 (ENSOSIG00000003413)	myf6 (ENSOSIG00000003401) #21	myf5 (ENSOSIG00000003391) #22	lin7a (ENSOSIG00000003379) #23	ACSS3 (ENSOSIG00000022239) #25	ppfia2 (ENSOSIG00000022032) #26	ENSOSIG00000021947	ENSOSIG00000021938	ptn (ENSOSIG00000021933)	chrm2a (ENSOSIG00000021926)	ENSOSIG00000021920	ENSOSIG00000021442	cd36 (ENSOSIG00000021399)	ENSOSIG00000021381	ENSOSIG00000021252	si:dkey-97m3.1 (ENSOSIG00000021193)	ergic2 (ENSOSIG00000021149)	KDM7A (ENSOSIG00000021128)
Chinese medaka	MODERN SPECIES	51	ENSOSIG00000008239	ENSOSIG00000008238	ENSOSIG00000008237	igf1 (ENSOSIG00000008154)	btbd11a (ENSOSIG00000008093)	cry1a (ENSOSIG00000007925)	MTERF2 (ENSOSIG00000007922)	tnnt2c (ENSOSIG00000007920)	syt10 (ENSOSIG00000007919)	ENSOSIG00000007916	ENSOSIG00000007911	syt1a (ENSOSIG00000007909) #14	pawr (ENSOSIG00000007906) #16	ppp1r12a (ENSOSIG00000007904) #18	myf6 (ENSOSIG00000007902) #21	myf5 (ENSOSIG00000007901) #22	lin7a (ENSOSIG00000007898) #23	ACSS3 (ENSOSIG00000007896) #25	RPS16 (ENSOSIG00000007851)	ppfia2 (ENSOSIG00000005522) #26	ENSOSIG00000005445	foxm1 (ENSOSIG00000005386)	ENSOSIG00000005383	ptn (ENSOSIG00000005378)	chrm2a (ENSOSIG00000005373)	ENSOSIG00000005369	SEMA3C (ENSOSIG00000005314)	cd36 (ENSOSIG00000005295)	ENSOSIG00000005228	ENSOSIG00000005174	si:dkey-97m3.1 (ENSOSIG00000005054)
Japanese Medaka HdrR	MODERN SPECIES	15	igf1 (ENSORLG00000016443)	ENSORLG00000027418	cox6b2 (ENSORLG00000016425)	btbd11a (ENSORLG00000016422)	ENSORLG00000016390	cry1a (ENSORLG00000016410)	tnnt2c (ENSORLG00000016386)	syt10 (ENSORLG00000016381)	ENSORLG00000016372	cyb5r3 (ENSORLG00000018656)	syt1a (ENSORLG00000016339) #14	pawr (ENSORLG00000026995) #16	ppp1r12a (ENSORLG00000016314) #18	rps16 (ENSORLG00000016271)	myf6 (ENSORLG00000016261) #21	myf5 (ENSORLG00000016257) #22	lin7a (ENSORLG00000030538) #23	ACSS3 (ENSORLG00000016249) #25	ppfia2 (ENSORLG00000016236) #26	ENSORLG00000016174	foxm1 (ENSORLG00000016140)	rhno1 (ENSORLG00000026209)	TULP3 (ENSORLG00000016129)	ENSORLG00000016118	ENSORLG00000024838	ptn (ENSORLG00000016099)	chrm2a (ENSORLG00000030214)	ENSORLG00000023855	ENSORLG00000029110	SEMA3C (ENSORLG00000016082)	cd36 (ENSORLG00000016066)
Cyprinodontiformes	ANCESTRAL SPECIES	19	ENSGT00940000168896	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Aplocheiloidei	ANCESTRAL SPECIES	14	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.a.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Mangrove rivulus	MODERN SPECIES	19	igf1 (ENSKMAG00000012960)	ENSKMAG00000012934	ENSKMAG00000012909	btbd11a (ENSKMAG00000012822)	cry1a (ENSKMAG00000012604)	tnnt2c (ENSKMAG00000012574)	syt10 (ENSKMAG00000012546)	ENSKMAG00000012499	cyb5r3 (ENSKMAG00000012463)	syt1a (ENSKMAG00000012419) #14	ENSKMAG00000012380	pawr (ENSKMAG00000012360) #16	ppp1r12a (ENSKMAG00000012279) #18	rps16 (ENSKMAG00000012230)	myf6 (ENSKMAG00000012210) #21	myf5 (ENSKMAG00000012199) #22	lin7a (ENSKMAG00000012178) #23	ACSS3 (ENSKMAG00000012129) #25	ppfia2 (ENSKMAG00000011901) #26	ENSKMAG00000011752	foxm1 (ENSKMAG00000011726)	rhno1 (ENSKMAG00000011710)	TULP3 (ENSKMAG00000011684)	ENSKMAG00000011655	ENSKMAG00000011642	ptn (ENSKMAG00000011624)	chrm2a (ENSKMAG00000011608)	ENSKMAG00000011593	ENSKMAG00000011574	SEMA3C (ENSKMAG00000011493)	cd36 (ENSKMAG00000011439)
Turquoise killifish	MODERN SPECIES	1610	cry1a (ENSNFUG00015018834)	tnnt2c (ENSNFUG00015018733)	SYT10 (ENSNFUG00015018728)	ENSNFUG00015018727	ENSNFUG00015018708	CYB5R3 (ENSNFUG00015018146)	SYT1A (ENSNFUG00015018114) #14	ENSNFUG00015018105	PAWR (ENSNFUG00015018098) #16	ppp1r12a (ENSNFUG00015018078) #18	ENSNFUG00015018069	RPS16 (ENSNFUG00015018063)	ENSNFUG00015018060	ENSNFUG00015018056	myf6 (ENSNFUG00015018050) #21	myf5 (ENSNFUG00015018047) #22	lin7a (ENSNFUG00015018040) #23	ENSNFUG00015018037	ACSS3 (ENSNFUG00015017298) #25	ENSNFUG00015017269	ppfia2 (ENSNFUG00015013697) #26	ENSNFUG00015013563	CU571169.1 (ENSNFUG00015012519)	foxm1 (ENSNFUG00015012456)	CU571169.5 (ENSNFUG00015012448)	TULP3 (ENSNFUG00015012432)	TRIM35 (ENSNFUG00015012422)	ptn (ENSNFUG00015012413)	CHRM2A (ENSNFUG00015012408)	ENSNFUG00015012405	ENSNFUG00015012400
Cyprinodontoidei	ANCESTRAL SPECIES	20	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00840000130048.b	ENSGT00940000162287.B.a.c	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Poeciliinae	ANCESTRAL SPECIES	19	ENSGT00940000162287.B.a.c	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Poecilia	ANCESTRAL SPECIES	29	ENSGT00940000162287.B.a.c	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
NAME_6	ANCESTRAL SPECIES	55	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT00940000155368.q	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Amazon molly	MODERN SPECIES	320	ENSPFOG00000017948	igf1 (ENSPFOG00000017930)	ENSPFOG00000017913	btbd11a (ENSPFOG00000017882)	ENSPFOG00000017877	cry1a (ENSPFOG00000017846)	tnnt2c (ENSPFOG00000020848)	syt10 (ENSPFOG00000017820)	ENSPFOG00000017778	cyb5r3 (ENSPFOG00000017742)	syt1a (ENSPFOG00000017713) #14	pawr (ENSPFOG00000017689) #16	ppp1r12a (ENSPFOG00000017528) #18	rps16 (ENSPFOG00000017508)	myf6 (ENSPFOG00000017498) #21	myf5 (ENSPFOG00000017488) #22	lin7a (ENSPFOG00000017480) #23	ACSS3 (ENSPFOG00000017417) #25	ppfia2 (ENSPFOG00000017112) #26	ENSPFOG00000022280 #26	ENSPFOG00000016986	foxm1 (ENSPFOG00000016962)	rhno1 (ENSPFOG00000016961)	TULP3 (ENSPFOG00000016911)	ENSPFOG00000016905	ENSPFOG00000016883	ptn (ENSPFOG00000016870)	chrm2a (ENSPFOG00000016867)	ENSPFOG00000016863	ENSPFOG00000016861	SEMA3C (ENSPFOG00000016799)
Sailfin molly	MODERN SPECIES	9										cyb5r3 (ENSPLAG00000011214)	syt1a (ENSPLAG00000011246) #14	pawr (ENSPLAG00000011257) #16	ppp1r12a (ENSPLAG00000011399) #18	rps16 (ENSPLAG00000011432)	myf6 (ENSPLAG00000011443) #21	myf5 (ENSPLAG00000011536) #22	lin7a (ENSPLAG00000011553) #23	ACSS3 (ENSPLAG00000011623) #25	ppfia2 (ENSPLAG00000011834) #26	ENSPLAG00000011929	foxm1 (ENSPLAG00000011940)	rhno1 (ENSPLAG00000011951)	TULP3 (ENSPLAG00000011999)	ENSPLAG00000012034	ENSPLAG00000012066	ptn (ENSPLAG00000012078)	chrm2a (ENSPLAG00000012100)	ENSPLAG00000012114	ENSPLAG00000012137
Guppy	MODERN SPECIES	454	snrpf (ENSPREG00000022635)	amdhd1 (ENSPREG00000022628)	tspan9b (ENSPREG00000022623)	ENSPREG00000022605	ENSPREG00000022592	cry1a (ENSPREG00000022582)	ENSPREG00000022576	syt10 (ENSPREG00000022565)	ENSPREG00000022557	cyb5r3 (ENSPREG00000022548)	syt1a (ENSPREG00000022536) #14	pawr (ENSPREG00000022522) #16	ppp1r12a (ENSPREG00000022493) #18	rps16 (ENSPREG00000022479)	myf6 (ENSPREG00000022475) #21	myf5 (ENSPREG00000022457) #22	lin7a (ENSPREG00000022447) #23	ACSS3 (ENSPREG00000022433) #25	ppfia2 (ENSPREG00000022413) #26	ENSPREG00000022397	foxm1 (ENSPREG00000022385)	rhno1 (ENSPREG00000022379)	TULP3 (ENSPREG00000022359)	ENSPREG00000022348	ENSPREG00000022336	ptn (ENSPREG00000022330)	chrm2a (ENSPREG00000022325)	ENSPREG00000022320	ENSPREG00000022313	SEMA3C (ENSPREG00000022300)	cd36 (ENSPREG00000022234)
Platyfish	MODERN SPECIES	8	ENSXMAG00000017362	igf1 (ENSXMAG00000028624)	ENSXMAG00000026515	ENSXMAG00000024762	btbd11a (ENSXMAG00000025507)	cyb5r3 (ENSXMAG00000017411)	ENSXMAG00000017426	syt10 (ENSXMAG00000017449)	ENSXMAG00000019615	cry1a (ENSXMAG00000017466)	syt1a (ENSXMAG00000017468) #14	pawr (ENSXMAG00000026362) #16	ppp1r12a (ENSXMAG00000017534) #18	rps16 (ENSXMAG00000030077)	myf6 (ENSXMAG00000017492) #21	myf5 (ENSXMAG00000017496) #22	lin7a (ENSXMAG00000026246) #23	ACSS3 (ENSXMAG00000017548) #25	ENSXMAG00000024730	ppfia2 (ENSXMAG00000027756) #26	ENSXMAG00000017594	foxm1 (ENSXMAG00000029688)	ENSXMAG00000024470	TULP3 (ENSXMAG00000017658)	ENSXMAG00000022584	ENSXMAG00000026341	ptn (ENSXMAG00000029793)	chrm2a (ENSXMAG00000017689)	ENSXMAG00000029537	mtpn (ENSXMAG00000004863)	ENSXMAG00000027095
NAME_4	ANCESTRAL SPECIES	16	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000162287.B.a.c	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a
Mummichog	MODERN SPECIES	2417									ENSFHEG00000021284	cyb5r3 (ENSFHEG00000021318)	syt1a (ENSFHEG00000021375) #14	pawr (ENSFHEG00000021387) #16	ppp1r12a (ENSFHEG00000021437) #18	rps16 (ENSFHEG00000021489)	myf6 (ENSFHEG00000021493) #21	myf5 (ENSFHEG00000021507) #22	lin7a (ENSFHEG00000021555) #23	ACSS3 (ENSFHEG00000021602) #25	ppfia2 (ENSFHEG00000021683) #26	ENSFHEG00000021695	foxm1 (ENSFHEG00000021721)	rhno1 (ENSFHEG00000021747)	ENSFHEG00000021764	ENSFHEG00000021805
Sheepshead minnow	MODERN SPECIES	119	ENSCVAG00000016009	igf1 (ENSCVAG00000016044)	ENSCVAG00000016092	ENSCVAG00000016098	btbd11a (ENSCVAG00000016113)	cry1a (ENSCVAG00000016128)	ENSCVAG00000016131	syt10 (ENSCVAG00000016202)	ENSCVAG00000016230	cyb5r3 (ENSCVAG00000016259)	syt1a (ENSCVAG00000016341) #14	pawr (ENSCVAG00000016350) #16	ppp1r12a (ENSCVAG00000016377) #18	rps16 (ENSCVAG00000016397)	myf6 (ENSCVAG00000016409) #21	myf5 (ENSCVAG00000016428) #22	lin7a (ENSCVAG00000016461) #23	ACSS3 (ENSCVAG00000016481) #25	ppfia2 (ENSCVAG00000016666) #26	ENSCVAG00000016685	foxm1 (ENSCVAG00000016692)	rhno1 (ENSCVAG00000016698)	ENSCVAG00000016726	ENSCVAG00000016742	ptn (ENSCVAG00000016747)	chrm2a (ENSCVAG00000016771)
Tiger tail seahorse	MODERN SPECIES	433	ccnd2b (ENSHCOG00000017500)	llph (ENSHCOG00000017511)	pex26 (ENSHCOG00000017529)	hcls1 (ENSHCOG00000017538)	ENSHCOG00000017542	guca1a (ENSHCOG00000000480)	orc5 (ENSHCOG00000017584)	lhfpl3 (ENSHCOG00000017594)	ENSHCOG00000017619	cyb5r3 (ENSHCOG00000017648)	syt1a (ENSHCOG00000017684) #14	pawr (ENSHCOG00000017688) #16	ppp1r12a (ENSHCOG00000017732) #18	rps16 (ENSHCOG00000017762)	myf6 (ENSHCOG00000017768) #21	myf5 (ENSHCOG00000017783) #22	lin7a (ENSHCOG00000017797) #23	ACSS3 (ENSHCOG00000017835) #25	ppfia2 (ENSHCOG00000017898) #26	ENSHCOG00000017941	foxm1 (ENSHCOG00000017947)	ENSHCOG00000017961	TULP3 (ENSHCOG00000017974)	ENSHCOG00000017982	ENSHCOG00000018040	syt10 (ENSHCOG00000018057)	tnnt2c (ENSHCOG00000018063)	cry1a (ENSHCOG00000018111)	btbd11a (ENSHCOG00000018163)	ENSHCOG00000018199	igf1 (ENSHCOG00000018270)
Pinecone sodierfish	MODERN SPECIES	15	ENSMMDG00005018912	btbd11a (ENSMMDG00005018917)	cry1a (ENSMMDG00005018951)	MTERF2 (ENSMMDG00005020073)	tnnt2c (ENSMMDG00005020074)	syt10 (ENSMMDG00005020079)	ENSMMDG00005020084	ENSMMDG00005020134	cyb5r3 (ENSMMDG00005020515)	syt1a (ENSMMDG00005020740) #14	pawr (ENSMMDG00005020744) #16	ppp1r12a (ENSMMDG00005020751) #18	rps16 (ENSMMDG00005020764)	ENSMMDG00005020765	myf6 (ENSMMDG00005020767) #21	myf5 (ENSMMDG00005020770) #22	lin7a (ENSMMDG00005020771) #23	ACSS3 (ENSMMDG00005020784) #25	ppfia2 (ENSMMDG00005021115) #26	ENSMMDG00005023019	foxm1 (ENSMMDG00005023025)	rhno1 (ENSMMDG00005023026)	TULP3 (ENSMMDG00005023029)	ENSMMDG00005023031	ptn (ENSMMDG00005023033)	chrm2a (ENSMMDG00005023036)	mtpn (ENSMMDG00005023039)	ENSMMDG00005023040	SEMA3C (ENSMMDG00005023044)	cd36 (ENSMMDG00005023059)	ENSMMDG00005023078
Cod	MODERN SPECIES	10	ENSGMOG00000001796	ENSGMOG00000033135	ENSGMOG00000025896	ENSGMOG00000028214	ENSGMOG00000033285	ENSGMOG00000020106	ENSGMOG00000025216	ENSGMOG00000028316	ENSGMOG00000022683	ENSGMOG00000024377	ENSGMOG00000033325	ENSGMOG00000025784	ENSGMOG00000029095	ENSGMOG00000028669	myf6 (ENSGMOG00000025107) #21	myf5 (ENSGMOG00000016963) #22	lin7a (ENSGMOG00000009243) #23	ACSS3 (ENSGMOG00000015350) #25	ppfia2 (ENSGMOG00000015273) #26	ENSGMOG00000028792	ENSGMOG00000026403	ENSGMOG00000012976	ENSGMOG00000033609	ENSGMOG00000010827	ENSGMOG00000010761	ENSGMOG00000035710	ENSGMOG00000019538	ENSGMOG00000030401	ENSGMOG00000014077	ENSGMOG00000013785	ENSGMOG00000026213
Protacanthopterygii	ANCESTRAL SPECIES	23	ENSGT00940000156334.a.b	ENSGT00390000005848	ENSGT00940000157275.a	ENSGT01030000234982	ENSGT00940000154649.A.r	ENSGT00400000022326.b.a.a	ENSGT00940000156120.a #18	ENSGT00390000000406 #16	ENSGT00940000155394.i.a #14	ENSGT00940000153962.b	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000158899	ENSGT00940000154709.a.a	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00530000063113.A.q	ENSGT00390000006367.c.w	ENSGT00940000155057.vb.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	90	ENSGT00400000022326.b.a.a.a	ENSGT00390000018272.j.b	ENSGT01100000263556.a.a.q.d.r	ENSGT00940000156120.a.g #18	ENSGT00940000164178.h.a.a.b	ENSGT00390000000406.i.b #16	ENSGT00940000155394.i.a.f #14	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.i	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a.f #22	ENSGT00950000182959.a.a.e #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479.c #25	ENSGT00940000157479.d #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000165344.d	ENSGT00940000158997.e.b	ENSGT00730000111007.a.a.l	ENSGT00940000165344.c	ENSGT00940000158997.f	ENSGT00730000111007.a.a.k.b	ENSGT00940000164333.e	ENSGT00390000009380.e.a	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044
Salmoninae_a	ANCESTRAL SPECIES	11	ENSGT00400000022326.b.a.a.a	ENSGT00390000018272.j.a	ENSGT01100000263549.k	ENSGT00940000167339	ENSGT01100000263556.a.a.q.d.r.a.b	ENSGT00940000156120.a.g #18	ENSGT00940000164178.h.a.a.b	ENSGT00390000000406.i.b #16	ENSGT00940000153962.b.e.a	ENSGT01050000244951.a.b.a.b.b.g	ENSGT01040000240385.A.b.b.a.b.a.a.a.b.b	ENSGT00940000158899.i.a	ENSGT00940000154709.a.a.f	ENSGT00940000164822.eb	ENSGT00390000013067.l.i	ENSGT00950000182959.a.a.e #22	ENSGT00940000153222.a.a.bb #23	ENSGT00940000157479.d #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000165344.d	ENSGT00940000158997.e.b	ENSGT00730000111007.a.a.l	ENSGT00940000164333.e	ENSGT00390000009380.e.a	ENSGT00990000203541.a.a.a.a.a	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.b	ENSGT00940000157862	ENSGT00390000004044.g	ENSGT00940000158039.h	ENSGT00530000063113.A.q.g	ENSGT00390000006367.c.w.a
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT01030000234589.h.f.b.b.a.a.a.b.b.b.a	ENSGT00940000175977	ENSGT01100000263549.k.a	ENSGT01100000263556.a.a.q.d.r.a.b.c.b	ENSGT00940000156120.a.g #18	ENSGT00940000164178.h.a.a.b	ENSGT00390000000406.i.b #16	ENSGT00940000153962.b.e.a	ENSGT01050000244951.a.b.a.b.b.g	ENSGT01040000240385.A.b.b.a.b.a.a.a.b.b	ENSGT00940000158899.i.a	ENSGT00940000154709.a.a.f	ENSGT00940000164822.eb	ENSGT00390000013067.l.i	ENSGT00950000182959.a.b.b.a.d #21	ENSGT00950000182959.a.a.e #22	ENSGT00940000153222.a.a.bb #23	ENSGT01050000244900.a.a.a.a.b.bb.i.b #26	ENSGT00940000165344.d.a	ENSGT00940000158997.e.b.b	ENSGT00730000111007.a.a.l.a	ENSGT00940000164333.e	ENSGT00390000009380.e.a	ENSGT00990000203541.a.a.a.a.a.l	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.b	ENSGT00940000157862.u.a	ENSGT00390000004044.g	ENSGT00940000158039.h.v	ENSGT00530000063113.A.q.g	ENSGT00390000006367.c.w.a	ENSGT00940000155057.vb.a.a
Oncorhynchus_a	ANCESTRAL SPECIES	64	ENSGT01090000260033.b.g.b.a.b.a.b.b.b.b.b	ENSGT01030000234589.h.f.b.b.a.a.a.b.b.b.a	ENSGT00940000175977	ENSGT01100000263549.k.a	ENSGT00940000156120.a.g #18	ENSGT00940000164178.h.a.a.b	ENSGT00390000000406.i.b #16	ENSGT00940000153962.b.e.a	ENSGT01050000244951.a.b.a.b.b.g	ENSGT01040000240385.A.b.b.a.b.a.a.a.b.b	ENSGT00940000158899.i.a	ENSGT00940000154709.a.a.f	ENSGT00940000164822.eb	ENSGT00390000013067.l.i	ENSGT00950000182959.a.b.b.a.d #21	ENSGT00950000182959.a.a.e #22	ENSGT00940000153222.a.a.bb #23	ENSGT01050000244900.a.a.a.a.b.bb.i.b #26	ENSGT00940000165344.d.a	ENSGT00940000158997.e.b.b	ENSGT00730000111007.a.a.l.a	ENSGT00940000164333.e	ENSGT00390000009380.e.a	ENSGT00990000203541.a.a.a.a.a.l	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.b	ENSGT00940000157862.u.a	ENSGT00390000004044.g	ENSGT00940000158039.h.v	ENSGT00530000063113.A.q.g.c	ENSGT00390000006367.c.w.a	ENSGT00940000155057.vb.a.a
Coho salmon	MODERN SPECIES	29	ENSOKIG00005012743	ENSOKIG00005012738	ppp1r12a (ENSOKIG00005012576) #18	ENSOKIG00005012494	PAWR (ENSOKIG00005012477) #16	syt1a (ENSOKIG00005012455) #14	cyb5r3 (ENSOKIG00005011252)	ENSOKIG00005011075	ENSOKIG00005011037	ENSOKIG00005011026	ENSOKIG00005011022	ENSOKIG00005010999	ENSOKIG00005010986	RPS16 (ENSOKIG00005010963)	myf6 (ENSOKIG00005010942) #21	myf5 (ENSOKIG00005010902) #22	lin7a (ENSOKIG00005010877) #23	ppfia2 (ENSOKIG00005007307) #26	llph (ENSOKIG00005007027)	hcls1 (ENSOKIG00005006199)	ENSOKIG00005006075	guca1a (ENSOKIG00005006054)	orc5 (ENSOKIG00005005916)	LHFPL3 (ENSOKIG00005005900)	ENSOKIG00005005890	ENSOKIG00005005876	ndufb2 (ENSOKIG00005005858)	ENSOKIG00005005773	ERGIC2 (ENSOKIG00005005657)	si:dkey-97m3.1 (ENSOKIG00005005611)	ENSOKIG00005005591
Chinook salmon	MODERN SPECIES	6	ENSOTSG00005006373	ENSOTSG00005006371	ENSOTSG00005006370	ENSOTSG00005006367	zgc:113263 (ENSOTSG00005006366)	ENSOTSG00005006364	cyb5r3 (ENSOTSG00005004729)	ENSOTSG00005004585	ENSOTSG00005004581	ENSOTSG00005004580	syt10 (ENSOTSG00005004578)	tnnt2c (ENSOTSG00005004568)	ENSOTSG00005004562	rps16 (ENSOTSG00005004561)	myf6 (ENSOTSG00005004560) #21	myf5 (ENSOTSG00005004458) #22	lin7a (ENSOTSG00005004455) #23	ENSOTSG00005004450	guca1a (ENSOTSG00005004448)	orc5 (ENSOTSG00005004419)	lhfpl3 (ENSOTSG00005004416)	ENSOTSG00005004414	ENSOTSG00005004413	ndufb2 (ENSOTSG00005004411)	KDM7A (ENSOTSG00005004384)	ergic2 (ENSOTSG00005004353)	si:dkey-97m3.1 (ENSOTSG00005004350)	ENSOTSG00005004348	ENSOTSG00005004346	ENSOTSG00005004345	cd36 (ENSOTSG00005004312)
Rainbow trout	MODERN SPECIES	13	ENSOMYG00000015882	ENSOMYG00000015860	ENSOMYG00000015664 #18	ENSOMYG00000015530	ENSOMYG00000015520 #16	ENSOMYG00000015469 #14	ENSOMYG00000015363	ENSOMYG00000015082	ENSOMYG00000014997	ENSOMYG00000014985	ENSOMYG00000014972	ENSOMYG00000014963	ENSOMYG00000014948	myf6 (ENSOMYG00000014934) #21	ENSOMYG00000074848	Myf5 (ENSOMYG00000014917) #22	lin7a (ENSOMYG00000014904) #23	ENSOMYG00000050420	ENSOMYG00000004734	ppfia2 (ENSOMYG00000014291) #26	llph (ENSOMYG00000013636)	hcls1 (ENSOMYG00000013975)	guca1a (ENSOMYG00000013888)	ENSOMYG00000013697	orc5 (ENSOMYG00000077068)	lhfpl3 (ENSOMYG00000013630)	ENSOMYG00000074943	ENSOMYG00000013624	ENSOMYG00000013553	ndufb2 (ENSOMYG00000013505)	ENSOMYG00000013418
Salmo	ANCESTRAL SPECIES	25	ENSGT01100000263549.k	ENSGT00940000167339.r	ENSGT01100000263556.a.a.q.d.r.a.b.b	ENSGT00940000156120.a.g #18	ENSGT00940000164178.h.a.a.b	ENSGT00390000000406.i.b #16	ENSGT00940000155394.i.a.f.b #14	ENSGT00940000153962.b.e.a	ENSGT01050000244951.a.b.a.b.b.g	ENSGT01040000240385.A.b.b.a.b.a.a.a.b.b	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.f	ENSGT00940000164822.eb.a	ENSGT00390000013067.l.i	ENSGT00950000182959.a.b.b.a.e #21	ENSGT00950000182959.a.a.e #22	ENSGT00940000153222.a.a.bb #23	ENSGT00940000157479.d #25	ENSGT01050000244900.a.a.a.a.b.bb.h #26	ENSGT00940000165344.c	ENSGT00940000158997.e.b	ENSGT00730000111007.a.a.k.b	ENSGT00940000164333.e	ENSGT00390000009380.e.a	ENSGT00990000203541.a.a.a.a.a.j	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.b	ENSGT00940000157862.s.b	ENSGT00940000158039.h.t	ENSGT01040000240385.A.a.b.b.f	ENSGT00940000157862.t	ENSGT00390000004044.h
River trout	MODERN SPECIES	38	ENSSTUG00000030624	ENSSTUG00000030613	ENSSTUG00000030667	ppp1r12a (ENSSTUG00000030696) #18	ENSSTUG00000030863	pawr (ENSSTUG00000030899) #16	syt1a (ENSSTUG00000030907) #14	cyb5r3 (ENSSTUG00000030947)	ENSSTUG00000031897	ENSSTUG00000032479	syt10 (ENSSTUG00000032485)	tnnt2c (ENSSTUG00000032501)	ENSSTUG00000032519	rps16 (ENSSTUG00000032534)	myf6 (ENSSTUG00000032558) #21	myf5 (ENSSTUG00000032573) #22	lin7a (ENSSTUG00000032580) #23	ACSS3 (ENSSTUG00000032599) #25	ppfia2 (ENSSTUG00000032738) #26	llph (ENSSTUG00000035187)	hcls1 (ENSSTUG00000035213)	ENSSTUG00000035760	guca1a (ENSSTUG00000035796)	orc5 (ENSSTUG00000035808)	lhfpl3 (ENSSTUG00000035854)	ENSSTUG00000035865	ENSSTUG00000035873	ndufb2 (ENSSTUG00000035879)	ENSSTUG00000035894	ergic2 (ENSSTUG00000036014)	si:dkey-97m3.1 (ENSSTUG00000036097)
Atlantic salmon	MODERN SPECIES	26	ENSSSAG00000048969	ENSSSAG00000049032 #18	ENSSSAG00000059264	ENSSSAG00000108147	ENSSSAG00000099338 #16	ENSSSAG00000092375 #14	ENSSSAG00000120466	ENSSSAG00000049921	ENSSSAG00000050368	ENSSSAG00000059783	ENSSSAG00000059802	ENSSSAG00000090411	ENSSSAG00000059832	ENSSSAG00000109892	myf6 (ENSSSAG00000059887) #21	myf5 (ENSSSAG00000006004) #22	lin7a (ENSSSAG00000086615) #23	ACSS3 (ENSSSAG00000060026) #25	ppfia2 (ENSSSAG00000060373) #26	llph (ENSSSAG00000064235)	hcls1 (ENSSSAG00000005879)	ENSSSAG00000064357	guca1a (ENSSSAG00000085222)	orc5 (ENSSSAG00000064371)	lhfpl3 (ENSSSAG00000082371)	ENSSSAG00000064417	ENSSSAG00000069201	ndufb2 (ENSSSAG00000116958)	ENSSSAG00000096353	ENSSSAG00000002755	ENSSSAG00000002786
Huchen	MODERN SPECIES	843							syt1a (ENSHHUG00000044047) #14	cyb5r3 (ENSHHUG00000044032)	ENSHHUG00000043992	ENSHHUG00000043988	syt10 (ENSHHUG00000043941)	tnnt2c (ENSHHUG00000043922)	ENSHHUG00000043915	rps16 (ENSHHUG00000043904)	myf6 (ENSHHUG00000043876) #21	myf5 (ENSHHUG00000043862) #22	lin7a (ENSHHUG00000043859) #23	ACSS3 (ENSHHUG00000043852) #25
Salmoninae	ANCESTRAL SPECIES	90	ENSGT00940000154649.A.r.b.b.a.b	ENSGT00400000022326.b.a.a.a	ENSGT00390000018272.j.b	ENSGT01100000263556.a.a.q.d.r	ENSGT00940000156120.a.g #18	ENSGT00940000164178.h.a.a.b	ENSGT00390000000406.i.b #16	ENSGT00940000155394.i.a.f #14	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.i	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a.f #22	ENSGT00950000182959.a.a.e #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479.c #25	ENSGT00940000157479.d #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000165344.d	ENSGT00940000158997.e.b	ENSGT00730000111007.a.a.l	ENSGT00940000165344.c	ENSGT00940000158997.f	ENSGT00730000111007.a.a.k.b	ENSGT00940000164333.e	ENSGT00390000009380.e.a	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862
Huchen	MODERN SPECIES	1610									syt1a (ENSHHUG00000041492) #14	cyb5r3 (ENSHHUG00000041465)	ENSHHUG00000041391	syt10 (ENSHHUG00000041360)	tnnt2c (ENSHHUG00000041347)	rps16 (ENSHHUG00000041325)	myf6 (ENSHHUG00000041254) #21	myf5 (ENSHHUG00000041246) #22
Salmoninae_a	ANCESTRAL SPECIES	167			ENSGT00940000154649.A.r.b.b.a.a	ENSGT00400000022326.b.a.a.b	ENSGT00530000063817.b.b	ENSGT00940000156120.a.h #18	ENSGT00940000164178.h.a.a.a	ENSGT00390000000406.i.a #16	ENSGT00940000155394.i.a.f #14	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a.f #22	ENSGT00940000153222.a.a.cb #23	ENSGT00940000157479.c #25
Oncorhynchus	ANCESTRAL SPECIES	22	ENSGT00940000167339	ENSGT01100000263556.a.a.q.d.r.a.b.d	ENSGT01100000263556.a.a.q.d.r.a.a	ENSGT01100000263556.a.a.q.d.r.a.b.c.a	ENSGT00530000063817.b.b	ENSGT00940000156120.a.h #18	ENSGT00940000164178.h.a.a.a	ENSGT00390000000406.i.a #16	ENSGT00940000155394.i.a.f #14	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a.c #21	ENSGT00950000182959.a.a.f #22	ENSGT00940000153222.a.a.cb #23	ENSGT00940000157479.c #25	ENSGT01050000244900.a.a.a.a.b.bb.i.a #26	ENSGT00940000165344.d.b	ENSGT00940000158997.e.b.a	ENSGT00730000111007.a.a.l.b	ENSGT00940000164333.f	ENSGT00390000009380.e.b	ENSGT00990000203541.a.a.a.a.a.k	ENSGT00940000157862.v	ENSGT00390000004044.h	ENSGT00940000158039.h.u	ENSGT00530000063113.A.q.h	ENSGT00390000006367.c.w.b	ENSGT00940000155057.vb.a.b
Oncorhynchus_a	ANCESTRAL SPECIES	31	ENSGT00940000167339	ENSGT01100000263556.a.a.q.d.r.a.b.d	ENSGT01100000263556.a.a.q.d.r.a.a	ENSGT01100000263556.a.a.q.d.r.a.b.c.a	ENSGT00530000063817.b.b	ENSGT00940000156120.a.h #18	ENSGT00940000164178.h.a.a.a	ENSGT00390000000406.i.a #16	ENSGT00940000155394.i.a.f #14	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a.c #21	ENSGT00950000182959.a.a.f #22	ENSGT00940000153222.a.a.cb #23	ENSGT00940000157479.c #25	ENSGT01050000244900.a.a.a.a.b.bb.i.a #26	ENSGT00940000165344.d.b	ENSGT00940000158997.e.a	ENSGT00940000158997.e.b.a	ENSGT00730000111007.a.a.l.b	ENSGT00940000164333.f	ENSGT00390000009380.e.b	ENSGT00990000203541.a.a.a.a.a.k	ENSGT00940000157862.v	ENSGT00390000004044.h	ENSGT00940000158039.h.u	ENSGT00530000063113.A.q.g.d	ENSGT00390000006367.c.w.b
Coho salmon	MODERN SPECIES	10	ENSOKIG00005044503	ENSOKIG00005044496	ENSOKIG00005044470	MTERF2 (ENSOKIG00005044462)	ENSOKIG00005044459	PPP1R12A (ENSOKIG00005044359) #18	ENSOKIG00005044330	pawr (ENSOKIG00005044327) #16	SYT1 (ENSOKIG00005044230) #14	CYB5R3 (ENSOKIG00005043270)	ENSOKIG00005042681	syt10 (ENSOKIG00005042620)	tnnt2c (ENSOKIG00005042597)	rps16 (ENSOKIG00005042520)	myf6 (ENSOKIG00005042479) #21	myf5 (ENSOKIG00005042418) #22	lin7a (ENSOKIG00005042387) #23	ACSS3 (ENSOKIG00005042154) #25	ppfia2 (ENSOKIG00005038115) #26	llph (ENSOKIG00005037949)	hcls1 (ENSOKIG00005037631)	ENSOKIG00005037557	guca1a (ENSOKIG00005037538)	orc5 (ENSOKIG00005037458)	lhfpl3 (ENSOKIG00005037430)	ENSOKIG00005037359	ndufb2 (ENSOKIG00005037334)	KDM7A (ENSOKIG00005037241)	ERGIC2 (ENSOKIG00005037145)	ENSOKIG00005037135	ENSOKIG00005037128
Chinook salmon	MODERN SPECIES	8	ENSOTSG00005010516	ENSOTSG00005010515	ENSOTSG00005010517	ENSOTSG00005010518	MTERF2 (ENSOTSG00005010519)	ppp1r12a (ENSOTSG00005010523) #18	ENSOTSG00005010529	pawr (ENSOTSG00005010530) #16	syt1a (ENSOTSG00005010532) #14	cyb5r3 (ENSOTSG00005010535)	ENSOTSG00005011764	syt10 (ENSOTSG00005018655)	tnnt2c (ENSOTSG00005018663)	rps16 (ENSOTSG00005018664)	myf6 (ENSOTSG00005018667) #21	myf5 (ENSOTSG00005018671) #22	lin7a (ENSOTSG00005018677) #23	ACSS3 (ENSOTSG00005018688) #25	ppfia2 (ENSOTSG00005020005) #26	ENSOTSG00005020012 #26	llph (ENSOTSG00005020013)	ENSOTSG00005020014	hcls1 (ENSOTSG00005020015)	ENSOTSG00005020017	guca1a (ENSOTSG00005034149)	orc5 (ENSOTSG00005034150)	lhfpl3 (ENSOTSG00005034151)	ENSOTSG00005034153	ndufb2 (ENSOTSG00005034155)	KDM7A (ENSOTSG00005034158)	ergic2 (ENSOTSG00005034161)
Rainbow trout	MODERN SPECIES	6	ENSOMYG00000006374	ENSOMYG00000006902 #18	ENSOMYG00000073880	ENSOMYG00000007180	ENSOMYG00000007233 #16	ENSOMYG00000007440 #14	ENSOMYG00000053625	ENSOMYG00000008300	ENSOMYG00000009103	ENSOMYG00000063310	ENSOMYG00000068663	ENSOMYG00000009238	ENSOMYG00000009249	ENSOMYG00000009357	myf6 (ENSOMYG00000009391) #21	myf5 (ENSOMYG00000009433) #22	lin7a (ENSOMYG00000009534) #23	ACSS3 (ENSOMYG00000009811) #25	ppfia2 (ENSOMYG00000010771) #26	llph (ENSOMYG00000012619)	hcls1 (ENSOMYG00000012684)	ENSOMYG00000012933	guca1a (ENSOMYG00000012949)	orc5 (ENSOMYG00000012964)	lhfpl3 (ENSOMYG00000012982)	ENSOMYG00000012992	ndufb2 (ENSOMYG00000013001)	ENSOMYG00000013028	ENSOMYG00000013055	ENSOMYG00000013061	ENSOMYG00000013071
Salmo	ANCESTRAL SPECIES	81			ENSGT01100000263556.a.a.q.d.r.a.a	ENSGT01100000263556.a.a.q.d.r.a.b.a	ENSGT00530000063817.b.b	ENSGT00940000156120.a.h #18	ENSGT00940000164178.h.a.a.a	ENSGT00390000000406.i.a #16	ENSGT00940000155394.i.a.f.a #14	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.a	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a.f #21	ENSGT00950000182959.a.a.f #22	ENSGT00940000153222.a.a.cb #23	ENSGT00940000157479.c #25	ENSGT01050000244900.a.a.a.a.b.bb.g #26	ENSGT00940000165344.d	ENSGT00940000158997.e.a.a	ENSGT00940000158997.e.a.b	ENSGT00730000111007.a.a.k.a	ENSGT00940000164333.f	ENSGT00390000009380.e.b	ENSGT00990000203541.a.a.a.a.a.i	ENSGT00940000157862.s.a	ENSGT00390000004044.g	ENSGT00940000158039.h.s	ENSGT00530000063113.A.q.h	ENSGT00390000006367.c.w.a.a
River trout	MODERN SPECIES	34	kitlgb (ENSSTUG00000027812)	ENSSTUG00000027803	ENSSTUG00000027792	ENSSTUG00000027774	ENSSTUG00000027757	ppp1r12a (ENSSTUG00000027550) #18	ENSSTUG00000027503	pawr (ENSSTUG00000027495) #16	syt1a (ENSSTUG00000027446) #14	cyb5r3 (ENSSTUG00000027246)	ENSSTUG00000026446	syt10 (ENSSTUG00000026383)	tnnt2c (ENSSTUG00000026330)	rps16 (ENSSTUG00000026299)	myf6 (ENSSTUG00000026265) #21	myf5 (ENSSTUG00000026178) #22	lin7a (ENSSTUG00000026114) #23	ENSSTUG00000026102	ACSS3 (ENSSTUG00000025813) #25	ppfia2 (ENSSTUG00000024089) #26	llph (ENSSTUG00000024017)	hcls1 (ENSSTUG00000023940)	ENSSTUG00000023891	guca1a (ENSSTUG00000023885)	orc5 (ENSSTUG00000023660)	lhfpl3 (ENSSTUG00000023639)	ENSSTUG00000023522	ndufb2 (ENSSTUG00000023507)	KDM7A (ENSSTUG00000023394)	ENSSTUG00000023386	ENSSTUG00000023379
Atlantic salmon	MODERN SPECIES	8	ENSSSAG00000059129	ENSSSAG00000059156	ENSSSAG00000059181	ENSSSAG00000059204 #18	ENSSSAG00000049822	ENSSSAG00000111955 #16	ENSSSAG00000059333 #14	ENSSSAG00000059420	ENSSSAG00000059732	ENSSSAG00000083937	ENSSSAG00000095543 #23	ENSSSAG00000113707	ENSSSAG00000089629	ENSSSAG00000066580	myf6 (ENSSSAG00000066608) #21	myf5 (ENSSSAG00000059922) #22	acss3 (ENSSSAG00000006095) #25	ENSSSAG00000092189	ppfia2 (ENSSSAG00000006415) #26	ENSSSAG00000006772	llph (ENSSSAG00000006778)	hcls1 (ENSSSAG00000064251)	ENSSSAG00000006792	guca1a (ENSSSAG00000121021)	orc5 (ENSSSAG00000006811)	lhfpl3 (ENSSSAG00000064408)	ENSSSAG00000002335	ENSSSAG00000006913	NDUB2 (ENSSSAG00000006908)	ENSSSAG00000006955	ENSSSAG00000007177
Northern pike	MODERN SPECIES	22	ENSELUG00000030654	ENSELUG00000028612	ENSELUG00000024788	ENSELUG00000028990	ENSELUG00000031374	kitlgb (ENSELUG00000002894)	ENSELUG00000002871	ppp1r12a (ENSELUG00000002794) #18	pawr (ENSELUG00000002637) #16	syt1a (ENSELUG00000002624) #14	cyb5r3 (ENSELUG00000001118)	ENSELUG00000002578	syt10 (ENSELUG00000002545)	tnnt2c (ENSELUG00000002535)	rps16 (ENSELUG00000002505)	myf5 (ENSELUG00000002500) #22	lin7a (ENSELUG00000002488) #23	ACSS3 (ENSELUG00000002474) #25	ppfia2 (ENSELUG00000002421) #26	llph (ENSELUG00000026094)	hcls1 (ENSELUG00000002347)	ENSELUG00000002315	guca1a (ENSELUG00000002288)	orc5 (ENSELUG00000002281)	lhfpl3 (ENSELUG00000002269)	ENSELUG00000028784	ENSELUG00000026586	ENSELUG00000002258	ndufb2 (ENSELUG00000002225)	KDM7A (ENSELUG00000002230)	ergic2 (ENSELUG00000002211)
Elephant shark	MODERN SPECIES	1598															myf6 (ENSCMIG00000003176) #21	myf5 (ENSCMIG00000003173) #22	ENSCMIG00000003169	lin7a (ENSCMIG00000003143) #23	ACSS3 (ENSCMIG00000003106) #25	ENSCMIG00000002009 #26	ENSCMIG00000001602 #27	METTL25 (ENSCMIG00000001596) #28	tmtc2a (ENSCMIG00000001512) #29	SLC6A15 (ENSCMIG00000001437) #32	ENSCMIG00000001422	ENSCMIG00000001392 #33	alx1 (ENSCMIG00000001372) #34	MGAT4C (ENSCMIG00000001367) #37	kcnc2 (ENSCMIG00000001363)	TRHDE (ENSCMIG00000001317)	tph2 (ENSCMIG00000001174)
Gnathostomata	DUPLICATION
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00950000182959.a.b.a ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000182959.a.b.a ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00950000182959.a.b.a ##22
Reedfish	MODERN SPECIES		pacsin2 (ENSECRG00000009143)	ttll1 (ENSECRG00000009159)	mcat (ENSECRG00000009176)	ENSECRG00000009184	nav3 (ENSECRG00000009243) #12	syt1a (ENSECRG00000009372) #14	pawr (ENSECRG00000009402) #16	ENSECRG00000009415	ENSECRG00000009427 #18	ENSECRG00000009442	rps16 (ENSECRG00000009451)	OTOGL (ENSECRG00000009486) #19	ENSECRG00000009546	PTPRQ (ENSECRG00000009623) #20	myf6 (ENSECRG00000009908) #21	ENSECRG00000009918 ##22	lin7a (ENSECRG00000009937) #23	ACSS3 (ENSECRG00000009948) #25	ppfia2 (ENSECRG00000010095) #26	ccdc59 (ENSECRG00000010497) #27	mettl25 (ENSECRG00000010503) #28	ENSECRG00000010511	tmtc2a (ENSECRG00000010528) #29	SLC6A15 (ENSECRG00000010556) #32	alx1 (ENSECRG00000010569) #34	RASSF9 (ENSECRG00000010575) #35	NTS (ENSECRG00000010584) #36	ENSECRG00000010592	zgc:103499 (ENSECRG00000010598)	ENSECRG00000010606	ENSECRG00000010614
Neopterygii	ANCESTRAL SPECIES																	ENSGT00950000182959.a.b.a ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00950000182959.a.b.a ##22
Osteoglossiformes	ANCESTRAL SPECIES																	ENSGT00950000182959.a.b.a ##22
Asian bonytongue	MODERN SPECIES	20	st8sia1 (ENSSFOG00015031686)	c2cd5 (ENSSFOG00015007251)	tnni1c (ENSSFOG00015007034)	ENSSFOG00015006988	fkbp4 (ENSSFOG00015006963)	wash1 (ENSSFOG00015006911)	IQSEC3 (ENSSFOG00015006849)	ENSSFOG00015006795	SLC6A12 (ENSSFOG00015006733)	PARP11 (ENSSFOG00015006711)	PARP11 (ENSSFOG00015030308)	TMTC2 (ENSSFOG00015006658) #29	ppfia2 (ENSSFOG00015006565) #26	ENSSFOG00015006552	ENSSFOG00015006506	ENSSFOG00015006456 ##22	lin7a (ENSSFOG00015006439) #23	rps16 (ENSSFOG00015027301)	ppp1r12a (ENSSFOG00015006318) #18	pawr (ENSSFOG00015029824) #16	syt1a (ENSSFOG00015029529) #14	nav3 (ENSSFOG00015005938) #12	e2f7 (ENSSFOG00015005873) #11	csrp2 (ENSSFOG00015026621) #10	zdhhc17 (ENSSFOG00015026847) #9	OSBPL8 (ENSSFOG00015005711) #7	BBS10 (ENSSFOG00015005695)	nap1l1 (ENSSFOG00015005659)	phlda1 (ENSSFOG00015005642)	GLIPR1 (ENSSFOG00015005634)	kcnc2 (ENSSFOG00015005624)
Spotted gar	MODERN SPECIES	674	ENSLOCG00000016266	nap1l1 (ENSLOCG00000016269)	BBS10 (ENSLOCG00000016274)	OSBPL8 (ENSLOCG00000016275) #7	zdhhc17 (ENSLOCG00000016277) #9	csrp2 (ENSLOCG00000016278) #10	e2f7 (ENSLOCG00000016279) #11	nav3 (ENSLOCG00000016281) #12	SYT1 (ENSLOCG00000016283) #14	pawr (ENSLOCG00000016287) #16	pawr (ENSLOCG00000017914) #16	ppp1r12a (ENSLOCG00000016288) #18	rps16 (ENSLOCG00000016289)	OTOGL (ENSLOCG00000016290) #19	PTPRQ (ENSLOCG00000016300) #20	ENSLOCG00000016302 ##22	lin7a (ENSLOCG00000016303) #23	ACSS3 (ENSLOCG00000016308) #25	ppfia2 (ENSLOCG00000016312) #26	ENSLOCG00000016320	ccdc59 (ENSLOCG00000016324) #27	mettl25 (ENSLOCG00000016327) #28	tmtc2a (ENSLOCG00000016332) #29	SLC6A15 (ENSLOCG00000016334) #32	ENSLOCG00000016339	ENSLOCG00000016340 #33	alx1 (ENSLOCG00000016343) #34	RASSF9 (ENSLOCG00000016344) #35	NTS (ENSLOCG00000016345) #36	MGAT4C (ENSLOCG00000016347) #37	ENSLOCG00000016349
Gnathostomata	DUPLICATION
Gnathostomata	ANCESTRAL SPECIES	283																ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34
Elephant shark	MODERN SPECIES	1598																myf6 (ENSCMIG00000003176) #21	myf5 (ENSCMIG00000003173) #22	ENSCMIG00000003169	lin7a (ENSCMIG00000003143) #23	ACSS3 (ENSCMIG00000003106) #25	ENSCMIG00000002009 #26	ENSCMIG00000001602 #27	METTL25 (ENSCMIG00000001596) #28	tmtc2a (ENSCMIG00000001512) #29	SLC6A15 (ENSCMIG00000001437) #32	ENSCMIG00000001422	ENSCMIG00000001392 #33	alx1 (ENSCMIG00000001372) #34	MGAT4C (ENSCMIG00000001367) #37	kcnc2 (ENSCMIG00000001363)	TRHDE (ENSCMIG00000001317)
Euteleostomi	ANCESTRAL SPECIES	16	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00660000096975	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000167105	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Actinopterygii	ANCESTRAL SPECIES	17	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00660000096975	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000167105	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Neopterygii	ANCESTRAL SPECIES	21	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00960000187527	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00660000096975	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000167105	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Osteoglossocephalai	ANCESTRAL SPECIES	48	ENSGT00390000018775	ENSGT00940000163632	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.k.b	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26
Clupeocephala	ANCESTRAL SPECIES	188	ENSGT00390000018775	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00510000047886.b	ENSGT00940000171263	ENSGT00940000158014 #12	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.k.a	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h
Euteleosteomorpha	ANCESTRAL SPECIES	30						ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00990000204681	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00530000063113.A.q
Protacanthopterygii	ANCESTRAL SPECIES	23	ENSGT00390000003290	ENSGT00940000156334.a.b	ENSGT00390000005848	ENSGT00940000157275.a	ENSGT01030000234982	ENSGT00940000154649.A.r	ENSGT00400000022326.b.a.a	ENSGT00940000156120.a #18	ENSGT00390000000406 #16	ENSGT00940000155394.i.a #14	ENSGT00940000153962.b	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000158899	ENSGT00940000154709.a.a	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00530000063113.A.q	ENSGT00390000006367.c.w
Salmoninae	ANCESTRAL SPECIES	90	ENSGT00940000154649.A.r.b.b.b.a	ENSGT00940000154649.A.r.b.b.a.b	ENSGT00400000022326.b.a.a.a	ENSGT00390000018272.j.b	ENSGT01100000263556.a.a.q.d.r	ENSGT00940000156120.a.g #18	ENSGT00940000164178.h.a.a.b	ENSGT00390000000406.i.b #16	ENSGT00940000155394.i.a.f #14	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.i	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a.f #22	ENSGT00950000182959.a.a.e #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479.c #25	ENSGT00940000157479.d #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000165344.d	ENSGT00940000158997.e.b	ENSGT00730000111007.a.a.l	ENSGT00940000165344.c	ENSGT00940000158997.f	ENSGT00730000111007.a.a.k.b	ENSGT00940000164333.e	ENSGT00390000009380.e.a	ENSGT00990000203541.a.a.a.a.a
Huchen	DUPLICATION
Huchen	MODERN SPECIES	843								syt1a (ENSHHUG00000044047) #14	cyb5r3 (ENSHHUG00000044032)	ENSHHUG00000043992	ENSHHUG00000043988	syt10 (ENSHHUG00000043941)	tnnt2c (ENSHHUG00000043922)	ENSHHUG00000043915	rps16 (ENSHHUG00000043904)	myf6 (ENSHHUG00000043876) #21	myf5 (ENSHHUG00000043862) #22	lin7a (ENSHHUG00000043859) #23	ACSS3 (ENSHHUG00000043852) #25
Huchen	MODERN SPECIES	1610										syt1a (ENSHHUG00000041492) #14	cyb5r3 (ENSHHUG00000041465)	ENSHHUG00000041391	syt10 (ENSHHUG00000041360)	tnnt2c (ENSHHUG00000041347)	rps16 (ENSHHUG00000041325)	myf6 (ENSHHUG00000041254) #21	myf5 (ENSHHUG00000041246) #22
Salmoninae_a	ANCESTRAL SPECIES	167				ENSGT00940000154649.A.r.b.b.a.a	ENSGT00400000022326.b.a.a.b	ENSGT00530000063817.b.b	ENSGT00940000156120.a.h #18	ENSGT00940000164178.h.a.a.a	ENSGT00390000000406.i.a #16	ENSGT00940000155394.i.a.f #14	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a.f #22	ENSGT00940000153222.a.a.cb #23	ENSGT00940000157479.c #25
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	22	ENSGT01100000263549.k.b	ENSGT00940000167339	ENSGT01100000263556.a.a.q.d.r.a.b.d	ENSGT01100000263556.a.a.q.d.r.a.a	ENSGT01100000263556.a.a.q.d.r.a.b.c.a	ENSGT00530000063817.b.b	ENSGT00940000156120.a.h #18	ENSGT00940000164178.h.a.a.a	ENSGT00390000000406.i.a #16	ENSGT00940000155394.i.a.f #14	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a.c #21	ENSGT00950000182959.a.a.f #22	ENSGT00940000153222.a.a.cb #23	ENSGT00940000157479.c #25	ENSGT01050000244900.a.a.a.a.b.bb.i.a #26	ENSGT00940000165344.d.b	ENSGT00940000158997.e.b.a	ENSGT00730000111007.a.a.l.b	ENSGT00940000164333.f	ENSGT00390000009380.e.b	ENSGT00990000203541.a.a.a.a.a.k	ENSGT00940000157862.v	ENSGT00390000004044.h	ENSGT00940000158039.h.u	ENSGT00530000063113.A.q.h	ENSGT00390000006367.c.w.b
Rainbow trout	MODERN SPECIES	6	ENSOMYG00000006344	ENSOMYG00000006374	ENSOMYG00000006902 #18	ENSOMYG00000073880	ENSOMYG00000007180	ENSOMYG00000007233 #16	ENSOMYG00000007440 #14	ENSOMYG00000053625	ENSOMYG00000008300	ENSOMYG00000009103	ENSOMYG00000063310	ENSOMYG00000068663	ENSOMYG00000009238	ENSOMYG00000009249	ENSOMYG00000009357	myf6 (ENSOMYG00000009391) #21	myf5 (ENSOMYG00000009433) #22	lin7a (ENSOMYG00000009534) #23	ACSS3 (ENSOMYG00000009811) #25	ppfia2 (ENSOMYG00000010771) #26	llph (ENSOMYG00000012619)	hcls1 (ENSOMYG00000012684)	ENSOMYG00000012933	guca1a (ENSOMYG00000012949)	orc5 (ENSOMYG00000012964)	lhfpl3 (ENSOMYG00000012982)	ENSOMYG00000012992	ndufb2 (ENSOMYG00000013001)	ENSOMYG00000013028	ENSOMYG00000013055	ENSOMYG00000013061
Oncorhynchus_a	ANCESTRAL SPECIES	31	ENSGT01100000263549.k.b	ENSGT00940000167339	ENSGT01100000263556.a.a.q.d.r.a.b.d	ENSGT01100000263556.a.a.q.d.r.a.a	ENSGT01100000263556.a.a.q.d.r.a.b.c.a	ENSGT00530000063817.b.b	ENSGT00940000156120.a.h #18	ENSGT00940000164178.h.a.a.a	ENSGT00390000000406.i.a #16	ENSGT00940000155394.i.a.f #14	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a.c #21	ENSGT00950000182959.a.a.f #22	ENSGT00940000153222.a.a.cb #23	ENSGT00940000157479.c #25	ENSGT01050000244900.a.a.a.a.b.bb.i.a #26	ENSGT00940000165344.d.b	ENSGT00940000158997.e.a	ENSGT00940000158997.e.b.a	ENSGT00730000111007.a.a.l.b	ENSGT00940000164333.f	ENSGT00390000009380.e.b	ENSGT00990000203541.a.a.a.a.a.k	ENSGT00940000157862.v	ENSGT00390000004044.h	ENSGT00940000158039.h.u	ENSGT00530000063113.A.q.g.d
Coho salmon	MODERN SPECIES	10	kitlgb (ENSOKIG00005044521)	ENSOKIG00005044503	ENSOKIG00005044496	ENSOKIG00005044470	MTERF2 (ENSOKIG00005044462)	ENSOKIG00005044459	PPP1R12A (ENSOKIG00005044359) #18	ENSOKIG00005044330	pawr (ENSOKIG00005044327) #16	SYT1 (ENSOKIG00005044230) #14	CYB5R3 (ENSOKIG00005043270)	ENSOKIG00005042681	syt10 (ENSOKIG00005042620)	tnnt2c (ENSOKIG00005042597)	rps16 (ENSOKIG00005042520)	myf6 (ENSOKIG00005042479) #21	myf5 (ENSOKIG00005042418) #22	lin7a (ENSOKIG00005042387) #23	ACSS3 (ENSOKIG00005042154) #25	ppfia2 (ENSOKIG00005038115) #26	llph (ENSOKIG00005037949)	hcls1 (ENSOKIG00005037631)	ENSOKIG00005037557	guca1a (ENSOKIG00005037538)	orc5 (ENSOKIG00005037458)	lhfpl3 (ENSOKIG00005037430)	ENSOKIG00005037359	ndufb2 (ENSOKIG00005037334)	KDM7A (ENSOKIG00005037241)	ERGIC2 (ENSOKIG00005037145)	ENSOKIG00005037135
Chinook salmon	MODERN SPECIES	8	kitlgb (ENSOTSG00005010514)	ENSOTSG00005010516	ENSOTSG00005010515	ENSOTSG00005010517	ENSOTSG00005010518	MTERF2 (ENSOTSG00005010519)	ppp1r12a (ENSOTSG00005010523) #18	ENSOTSG00005010529	pawr (ENSOTSG00005010530) #16	syt1a (ENSOTSG00005010532) #14	cyb5r3 (ENSOTSG00005010535)	ENSOTSG00005011764	syt10 (ENSOTSG00005018655)	tnnt2c (ENSOTSG00005018663)	rps16 (ENSOTSG00005018664)	myf6 (ENSOTSG00005018667) #21	myf5 (ENSOTSG00005018671) #22	lin7a (ENSOTSG00005018677) #23	ACSS3 (ENSOTSG00005018688) #25	ppfia2 (ENSOTSG00005020005) #26	ENSOTSG00005020012 #26	llph (ENSOTSG00005020013)	ENSOTSG00005020014	hcls1 (ENSOTSG00005020015)	ENSOTSG00005020017	guca1a (ENSOTSG00005034149)	orc5 (ENSOTSG00005034150)	lhfpl3 (ENSOTSG00005034151)	ENSOTSG00005034153	ndufb2 (ENSOTSG00005034155)	KDM7A (ENSOTSG00005034158)
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT01090000260033.b.g.b.a.b.a.b.b.b.b.b	ENSGT01030000234589.h.f.b.b.a.a.a.b.b.b.a	ENSGT00940000175977	ENSGT01100000263549.k.a	ENSGT01100000263556.a.a.q.d.r.a.b.c.b	ENSGT00940000156120.a.g #18	ENSGT00940000164178.h.a.a.b	ENSGT00390000000406.i.b #16	ENSGT00940000153962.b.e.a	ENSGT01050000244951.a.b.a.b.b.g	ENSGT01040000240385.A.b.b.a.b.a.a.a.b.b	ENSGT00940000158899.i.a	ENSGT00940000154709.a.a.f	ENSGT00940000164822.eb	ENSGT00390000013067.l.i	ENSGT00950000182959.a.b.b.a.d #21	ENSGT00950000182959.a.a.e #22	ENSGT00940000153222.a.a.bb #23	ENSGT01050000244900.a.a.a.a.b.bb.i.b #26	ENSGT00940000165344.d.a	ENSGT00940000158997.e.b.b	ENSGT00730000111007.a.a.l.a	ENSGT00940000164333.e	ENSGT00390000009380.e.a	ENSGT00990000203541.a.a.a.a.a.l	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.b	ENSGT00940000157862.u.a	ENSGT00390000004044.g	ENSGT00940000158039.h.v	ENSGT00530000063113.A.q.g	ENSGT00390000006367.c.w.a
Rainbow trout	MODERN SPECIES	13	ENSOMYG00000015906	ENSOMYG00000015887	ENSOMYG00000015882	ENSOMYG00000015860	ENSOMYG00000015664 #18	ENSOMYG00000015530	ENSOMYG00000015520 #16	ENSOMYG00000015469 #14	ENSOMYG00000015363	ENSOMYG00000015082	ENSOMYG00000014997	ENSOMYG00000014985	ENSOMYG00000014972	ENSOMYG00000014963	ENSOMYG00000014948	myf6 (ENSOMYG00000014934) #21	ENSOMYG00000074848	Myf5 (ENSOMYG00000014917) #22	lin7a (ENSOMYG00000014904) #23	ENSOMYG00000050420	ENSOMYG00000004734	ppfia2 (ENSOMYG00000014291) #26	llph (ENSOMYG00000013636)	hcls1 (ENSOMYG00000013975)	guca1a (ENSOMYG00000013888)	ENSOMYG00000013697	orc5 (ENSOMYG00000077068)	lhfpl3 (ENSOMYG00000013630)	ENSOMYG00000074943	ENSOMYG00000013624	ENSOMYG00000013553
Oncorhynchus_a	ANCESTRAL SPECIES	64	ENSGT01090000260033.b.g.b.b.b.a.b.a.d	ENSGT01090000260033.b.g.b.a.b.a.b.b.b.b.b	ENSGT01030000234589.h.f.b.b.a.a.a.b.b.b.a	ENSGT00940000175977	ENSGT01100000263549.k.a	ENSGT00940000156120.a.g #18	ENSGT00940000164178.h.a.a.b	ENSGT00390000000406.i.b #16	ENSGT00940000153962.b.e.a	ENSGT01050000244951.a.b.a.b.b.g	ENSGT01040000240385.A.b.b.a.b.a.a.a.b.b	ENSGT00940000158899.i.a	ENSGT00940000154709.a.a.f	ENSGT00940000164822.eb	ENSGT00390000013067.l.i	ENSGT00950000182959.a.b.b.a.d #21	ENSGT00950000182959.a.a.e #22	ENSGT00940000153222.a.a.bb #23	ENSGT01050000244900.a.a.a.a.b.bb.i.b #26	ENSGT00940000165344.d.a	ENSGT00940000158997.e.b.b	ENSGT00730000111007.a.a.l.a	ENSGT00940000164333.e	ENSGT00390000009380.e.a	ENSGT00990000203541.a.a.a.a.a.l	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.b	ENSGT00940000157862.u.a	ENSGT00390000004044.g	ENSGT00940000158039.h.v	ENSGT00530000063113.A.q.g.c	ENSGT00390000006367.c.w.a
Coho salmon	MODERN SPECIES	29	ENSOKIG00005012764	ENSOKIG00005012743	ENSOKIG00005012738	ppp1r12a (ENSOKIG00005012576) #18	ENSOKIG00005012494	PAWR (ENSOKIG00005012477) #16	syt1a (ENSOKIG00005012455) #14	cyb5r3 (ENSOKIG00005011252)	ENSOKIG00005011075	ENSOKIG00005011037	ENSOKIG00005011026	ENSOKIG00005011022	ENSOKIG00005010999	ENSOKIG00005010986	RPS16 (ENSOKIG00005010963)	myf6 (ENSOKIG00005010942) #21	myf5 (ENSOKIG00005010902) #22	lin7a (ENSOKIG00005010877) #23	ppfia2 (ENSOKIG00005007307) #26	llph (ENSOKIG00005007027)	hcls1 (ENSOKIG00005006199)	ENSOKIG00005006075	guca1a (ENSOKIG00005006054)	orc5 (ENSOKIG00005005916)	LHFPL3 (ENSOKIG00005005900)	ENSOKIG00005005890	ENSOKIG00005005876	ndufb2 (ENSOKIG00005005858)	ENSOKIG00005005773	ERGIC2 (ENSOKIG00005005657)	si:dkey-97m3.1 (ENSOKIG00005005611)
Chinook salmon	MODERN SPECIES	6	ENSOTSG00005006375	ENSOTSG00005006373	ENSOTSG00005006371	ENSOTSG00005006370	ENSOTSG00005006367	zgc:113263 (ENSOTSG00005006366)	ENSOTSG00005006364	cyb5r3 (ENSOTSG00005004729)	ENSOTSG00005004585	ENSOTSG00005004581	ENSOTSG00005004580	syt10 (ENSOTSG00005004578)	tnnt2c (ENSOTSG00005004568)	ENSOTSG00005004562	rps16 (ENSOTSG00005004561)	myf6 (ENSOTSG00005004560) #21	myf5 (ENSOTSG00005004458) #22	lin7a (ENSOTSG00005004455) #23	ENSOTSG00005004450	guca1a (ENSOTSG00005004448)	orc5 (ENSOTSG00005004419)	lhfpl3 (ENSOTSG00005004416)	ENSOTSG00005004414	ENSOTSG00005004413	ndufb2 (ENSOTSG00005004411)	KDM7A (ENSOTSG00005004384)	ergic2 (ENSOTSG00005004353)	si:dkey-97m3.1 (ENSOTSG00005004350)	ENSOTSG00005004348	ENSOTSG00005004346	ENSOTSG00005004345
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	25	ENSGT00390000018272.j.a	ENSGT01100000263549.k	ENSGT00940000167339.r	ENSGT01100000263556.a.a.q.d.r.a.b.b	ENSGT00940000156120.a.g #18	ENSGT00940000164178.h.a.a.b	ENSGT00390000000406.i.b #16	ENSGT00940000155394.i.a.f.b #14	ENSGT00940000153962.b.e.a	ENSGT01050000244951.a.b.a.b.b.g	ENSGT01040000240385.A.b.b.a.b.a.a.a.b.b	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.f	ENSGT00940000164822.eb.a	ENSGT00390000013067.l.i	ENSGT00950000182959.a.b.b.a.e #21	ENSGT00950000182959.a.a.e #22	ENSGT00940000153222.a.a.bb #23	ENSGT00940000157479.d #25	ENSGT01050000244900.a.a.a.a.b.bb.h #26	ENSGT00940000165344.c	ENSGT00940000158997.e.b	ENSGT00730000111007.a.a.k.b	ENSGT00940000164333.e	ENSGT00390000009380.e.a	ENSGT00990000203541.a.a.a.a.a.j	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.b	ENSGT00940000157862.s.b	ENSGT00940000158039.h.t	ENSGT01040000240385.A.a.b.b.f	ENSGT00940000157862.t
Atlantic salmon	MODERN SPECIES	26	ENSSSAG00000101043	ENSSSAG00000048969	ENSSSAG00000049032 #18	ENSSSAG00000059264	ENSSSAG00000108147	ENSSSAG00000099338 #16	ENSSSAG00000092375 #14	ENSSSAG00000120466	ENSSSAG00000049921	ENSSSAG00000050368	ENSSSAG00000059783	ENSSSAG00000059802	ENSSSAG00000090411	ENSSSAG00000059832	ENSSSAG00000109892	myf6 (ENSSSAG00000059887) #21	myf5 (ENSSSAG00000006004) #22	lin7a (ENSSSAG00000086615) #23	ACSS3 (ENSSSAG00000060026) #25	ppfia2 (ENSSSAG00000060373) #26	llph (ENSSSAG00000064235)	hcls1 (ENSSSAG00000005879)	ENSSSAG00000064357	guca1a (ENSSSAG00000085222)	orc5 (ENSSSAG00000064371)	lhfpl3 (ENSSSAG00000082371)	ENSSSAG00000064417	ENSSSAG00000069201	ndufb2 (ENSSSAG00000116958)	ENSSSAG00000096353	ENSSSAG00000002755
River trout	MODERN SPECIES	38	ENSSTUG00000030595	ENSSTUG00000030624	ENSSTUG00000030613	ENSSTUG00000030667	ppp1r12a (ENSSTUG00000030696) #18	ENSSTUG00000030863	pawr (ENSSTUG00000030899) #16	syt1a (ENSSTUG00000030907) #14	cyb5r3 (ENSSTUG00000030947)	ENSSTUG00000031897	ENSSTUG00000032479	syt10 (ENSSTUG00000032485)	tnnt2c (ENSSTUG00000032501)	ENSSTUG00000032519	rps16 (ENSSTUG00000032534)	myf6 (ENSSTUG00000032558) #21	myf5 (ENSSTUG00000032573) #22	lin7a (ENSSTUG00000032580) #23	ACSS3 (ENSSTUG00000032599) #25	ppfia2 (ENSSTUG00000032738) #26	llph (ENSSTUG00000035187)	hcls1 (ENSSTUG00000035213)	ENSSTUG00000035760	guca1a (ENSSTUG00000035796)	orc5 (ENSSTUG00000035808)	lhfpl3 (ENSSTUG00000035854)	ENSSTUG00000035865	ENSSTUG00000035873	ndufb2 (ENSSTUG00000035879)	ENSSTUG00000035894	ergic2 (ENSSTUG00000036014)
Salmo	ANCESTRAL SPECIES	81				ENSGT01100000263556.a.a.q.d.r.a.a	ENSGT01100000263556.a.a.q.d.r.a.b.a	ENSGT00530000063817.b.b	ENSGT00940000156120.a.h #18	ENSGT00940000164178.h.a.a.a	ENSGT00390000000406.i.a #16	ENSGT00940000155394.i.a.f.a #14	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.a	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a.f #21	ENSGT00950000182959.a.a.f #22	ENSGT00940000153222.a.a.cb #23	ENSGT00940000157479.c #25	ENSGT01050000244900.a.a.a.a.b.bb.g #26	ENSGT00940000165344.d	ENSGT00940000158997.e.a.a	ENSGT00940000158997.e.a.b	ENSGT00730000111007.a.a.k.a	ENSGT00940000164333.f	ENSGT00390000009380.e.b	ENSGT00990000203541.a.a.a.a.a.i	ENSGT00940000157862.s.a	ENSGT00390000004044.g	ENSGT00940000158039.h.s	ENSGT00530000063113.A.q.h
Atlantic salmon	MODERN SPECIES	8	ENSSSAG00000059114	ENSSSAG00000059129	ENSSSAG00000059156	ENSSSAG00000059181	ENSSSAG00000059204 #18	ENSSSAG00000049822	ENSSSAG00000111955 #16	ENSSSAG00000059333 #14	ENSSSAG00000059420	ENSSSAG00000059732	ENSSSAG00000083937	ENSSSAG00000095543 #23	ENSSSAG00000113707	ENSSSAG00000089629	ENSSSAG00000066580	myf6 (ENSSSAG00000066608) #21	myf5 (ENSSSAG00000059922) #22	acss3 (ENSSSAG00000006095) #25	ENSSSAG00000092189	ppfia2 (ENSSSAG00000006415) #26	ENSSSAG00000006772	llph (ENSSSAG00000006778)	hcls1 (ENSSSAG00000064251)	ENSSSAG00000006792	guca1a (ENSSSAG00000121021)	orc5 (ENSSSAG00000006811)	lhfpl3 (ENSSSAG00000064408)	ENSSSAG00000002335	ENSSSAG00000006913	NDUB2 (ENSSSAG00000006908)	ENSSSAG00000006955
River trout	MODERN SPECIES	34	ENSSTUG00000027916	kitlgb (ENSSTUG00000027812)	ENSSTUG00000027803	ENSSTUG00000027792	ENSSTUG00000027774	ENSSTUG00000027757	ppp1r12a (ENSSTUG00000027550) #18	ENSSTUG00000027503	pawr (ENSSTUG00000027495) #16	syt1a (ENSSTUG00000027446) #14	cyb5r3 (ENSSTUG00000027246)	ENSSTUG00000026446	syt10 (ENSSTUG00000026383)	tnnt2c (ENSSTUG00000026330)	rps16 (ENSSTUG00000026299)	myf6 (ENSSTUG00000026265) #21	myf5 (ENSSTUG00000026178) #22	lin7a (ENSSTUG00000026114) #23	ENSSTUG00000026102	ACSS3 (ENSSTUG00000025813) #25	ppfia2 (ENSSTUG00000024089) #26	llph (ENSSTUG00000024017)	hcls1 (ENSSTUG00000023940)	ENSSTUG00000023891	guca1a (ENSSTUG00000023885)	orc5 (ENSSTUG00000023660)	lhfpl3 (ENSSTUG00000023639)	ENSSTUG00000023522	ndufb2 (ENSSTUG00000023507)	KDM7A (ENSSTUG00000023394)	ENSSTUG00000023386
Acanthomorphata	ANCESTRAL SPECIES	47	ENSGT00940000163513	ENSGT00950000183052.b.c.b.a	ENSGT00940000158003	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Euacanthomorphacea	ANCESTRAL SPECIES	18	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.a.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Pinecone sodierfish	MODERN SPECIES	15	igf1 (ENSMMDG00005018826)	ENSMMDG00005018912	btbd11a (ENSMMDG00005018917)	cry1a (ENSMMDG00005018951)	MTERF2 (ENSMMDG00005020073)	tnnt2c (ENSMMDG00005020074)	syt10 (ENSMMDG00005020079)	ENSMMDG00005020084	ENSMMDG00005020134	cyb5r3 (ENSMMDG00005020515)	syt1a (ENSMMDG00005020740) #14	pawr (ENSMMDG00005020744) #16	ppp1r12a (ENSMMDG00005020751) #18	rps16 (ENSMMDG00005020764)	ENSMMDG00005020765	myf6 (ENSMMDG00005020767) #21	myf5 (ENSMMDG00005020770) #22	lin7a (ENSMMDG00005020771) #23	ACSS3 (ENSMMDG00005020784) #25	ppfia2 (ENSMMDG00005021115) #26	ENSMMDG00005023019	foxm1 (ENSMMDG00005023025)	rhno1 (ENSMMDG00005023026)	TULP3 (ENSMMDG00005023029)	ENSMMDG00005023031	ptn (ENSMMDG00005023033)	chrm2a (ENSMMDG00005023036)	mtpn (ENSMMDG00005023039)	ENSMMDG00005023040	SEMA3C (ENSMMDG00005023044)	cd36 (ENSMMDG00005023059)
Percomorphaceae	ANCESTRAL SPECIES	19	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Tiger tail seahorse	MODERN SPECIES	433	fgf23 (ENSHCOG00000017488)	ccnd2b (ENSHCOG00000017500)	llph (ENSHCOG00000017511)	pex26 (ENSHCOG00000017529)	hcls1 (ENSHCOG00000017538)	ENSHCOG00000017542	guca1a (ENSHCOG00000000480)	orc5 (ENSHCOG00000017584)	lhfpl3 (ENSHCOG00000017594)	ENSHCOG00000017619	cyb5r3 (ENSHCOG00000017648)	syt1a (ENSHCOG00000017684) #14	pawr (ENSHCOG00000017688) #16	ppp1r12a (ENSHCOG00000017732) #18	rps16 (ENSHCOG00000017762)	myf6 (ENSHCOG00000017768) #21	myf5 (ENSHCOG00000017783) #22	lin7a (ENSHCOG00000017797) #23	ACSS3 (ENSHCOG00000017835) #25	ppfia2 (ENSHCOG00000017898) #26	ENSHCOG00000017941	foxm1 (ENSHCOG00000017947)	ENSHCOG00000017961	TULP3 (ENSHCOG00000017974)	ENSHCOG00000017982	ENSHCOG00000018040	syt10 (ENSHCOG00000018057)	tnnt2c (ENSHCOG00000018063)	cry1a (ENSHCOG00000018111)	btbd11a (ENSHCOG00000018163)	ENSHCOG00000018199
Percomorphaceae_B	ANCESTRAL SPECIES	21	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Ovalentaria	ANCESTRAL SPECIES	22	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Atherinomorphae	ANCESTRAL SPECIES	21	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379
Cyprinodontiformes	ANCESTRAL SPECIES	19	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379
Aplocheiloidei	ANCESTRAL SPECIES	14	ENSGT00390000010777	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.a.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379
Mangrove rivulus	MODERN SPECIES	19	ENSKMAG00000012992	igf1 (ENSKMAG00000012960)	ENSKMAG00000012934	ENSKMAG00000012909	btbd11a (ENSKMAG00000012822)	cry1a (ENSKMAG00000012604)	tnnt2c (ENSKMAG00000012574)	syt10 (ENSKMAG00000012546)	ENSKMAG00000012499	cyb5r3 (ENSKMAG00000012463)	syt1a (ENSKMAG00000012419) #14	ENSKMAG00000012380	pawr (ENSKMAG00000012360) #16	ppp1r12a (ENSKMAG00000012279) #18	rps16 (ENSKMAG00000012230)	myf6 (ENSKMAG00000012210) #21	myf5 (ENSKMAG00000012199) #22	lin7a (ENSKMAG00000012178) #23	ACSS3 (ENSKMAG00000012129) #25	ppfia2 (ENSKMAG00000011901) #26	ENSKMAG00000011752	foxm1 (ENSKMAG00000011726)	rhno1 (ENSKMAG00000011710)	TULP3 (ENSKMAG00000011684)	ENSKMAG00000011655	ENSKMAG00000011642	ptn (ENSKMAG00000011624)	chrm2a (ENSKMAG00000011608)	ENSKMAG00000011593	ENSKMAG00000011574	SEMA3C (ENSKMAG00000011493)
Turquoise killifish	MODERN SPECIES	1610	btbd11a (ENSNFUG00015022372)	cry1a (ENSNFUG00015018834)	tnnt2c (ENSNFUG00015018733)	SYT10 (ENSNFUG00015018728)	ENSNFUG00015018727	ENSNFUG00015018708	CYB5R3 (ENSNFUG00015018146)	SYT1A (ENSNFUG00015018114) #14	ENSNFUG00015018105	PAWR (ENSNFUG00015018098) #16	ppp1r12a (ENSNFUG00015018078) #18	ENSNFUG00015018069	RPS16 (ENSNFUG00015018063)	ENSNFUG00015018060	ENSNFUG00015018056	myf6 (ENSNFUG00015018050) #21	myf5 (ENSNFUG00015018047) #22	lin7a (ENSNFUG00015018040) #23	ENSNFUG00015018037	ACSS3 (ENSNFUG00015017298) #25	ENSNFUG00015017269	ppfia2 (ENSNFUG00015013697) #26	ENSNFUG00015013563	CU571169.1 (ENSNFUG00015012519)	foxm1 (ENSNFUG00015012456)	CU571169.5 (ENSNFUG00015012448)	TULP3 (ENSNFUG00015012432)	TRIM35 (ENSNFUG00015012422)	ptn (ENSNFUG00015012413)	CHRM2A (ENSNFUG00015012408)	ENSNFUG00015012405
Cyprinodontoidei	ANCESTRAL SPECIES	20	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00840000130048.b	ENSGT00940000162287.B.a.c	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379
Poeciliinae	ANCESTRAL SPECIES	19	ENSGT00840000130048.b	ENSGT00940000162287.B.a.c	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379
Platyfish	MODERN SPECIES	8	parpbp (ENSXMAG00000017346)	ENSXMAG00000017362	igf1 (ENSXMAG00000028624)	ENSXMAG00000026515	ENSXMAG00000024762	btbd11a (ENSXMAG00000025507)	cyb5r3 (ENSXMAG00000017411)	ENSXMAG00000017426	syt10 (ENSXMAG00000017449)	ENSXMAG00000019615	cry1a (ENSXMAG00000017466)	syt1a (ENSXMAG00000017468) #14	pawr (ENSXMAG00000026362) #16	ppp1r12a (ENSXMAG00000017534) #18	rps16 (ENSXMAG00000030077)	myf6 (ENSXMAG00000017492) #21	myf5 (ENSXMAG00000017496) #22	lin7a (ENSXMAG00000026246) #23	ACSS3 (ENSXMAG00000017548) #25	ENSXMAG00000024730	ppfia2 (ENSXMAG00000027756) #26	ENSXMAG00000017594	foxm1 (ENSXMAG00000029688)	ENSXMAG00000024470	TULP3 (ENSXMAG00000017658)	ENSXMAG00000022584	ENSXMAG00000026341	ptn (ENSXMAG00000029793)	chrm2a (ENSXMAG00000017689)	ENSXMAG00000029537	mtpn (ENSXMAG00000004863)
Poecilia	ANCESTRAL SPECIES	29	ENSGT00840000130048.b	ENSGT00940000162287.B.a.c	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Guppy	MODERN SPECIES	454	ntn4 (ENSPREG00000022641)	snrpf (ENSPREG00000022635)	amdhd1 (ENSPREG00000022628)	tspan9b (ENSPREG00000022623)	ENSPREG00000022605	ENSPREG00000022592	cry1a (ENSPREG00000022582)	ENSPREG00000022576	syt10 (ENSPREG00000022565)	ENSPREG00000022557	cyb5r3 (ENSPREG00000022548)	syt1a (ENSPREG00000022536) #14	pawr (ENSPREG00000022522) #16	ppp1r12a (ENSPREG00000022493) #18	rps16 (ENSPREG00000022479)	myf6 (ENSPREG00000022475) #21	myf5 (ENSPREG00000022457) #22	lin7a (ENSPREG00000022447) #23	ACSS3 (ENSPREG00000022433) #25	ppfia2 (ENSPREG00000022413) #26	ENSPREG00000022397	foxm1 (ENSPREG00000022385)	rhno1 (ENSPREG00000022379)	TULP3 (ENSPREG00000022359)	ENSPREG00000022348	ENSPREG00000022336	ptn (ENSPREG00000022330)	chrm2a (ENSPREG00000022325)	ENSPREG00000022320	ENSPREG00000022313	SEMA3C (ENSPREG00000022300)
NAME_6	ANCESTRAL SPECIES	55	ENSGT00940000168896	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT00940000155368.q	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379
Amazon molly	MODERN SPECIES	320	parpbp (ENSPFOG00000017952)	ENSPFOG00000017948	igf1 (ENSPFOG00000017930)	ENSPFOG00000017913	btbd11a (ENSPFOG00000017882)	ENSPFOG00000017877	cry1a (ENSPFOG00000017846)	tnnt2c (ENSPFOG00000020848)	syt10 (ENSPFOG00000017820)	ENSPFOG00000017778	cyb5r3 (ENSPFOG00000017742)	syt1a (ENSPFOG00000017713) #14	pawr (ENSPFOG00000017689) #16	ppp1r12a (ENSPFOG00000017528) #18	rps16 (ENSPFOG00000017508)	myf6 (ENSPFOG00000017498) #21	myf5 (ENSPFOG00000017488) #22	lin7a (ENSPFOG00000017480) #23	ACSS3 (ENSPFOG00000017417) #25	ppfia2 (ENSPFOG00000017112) #26	ENSPFOG00000022280 #26	ENSPFOG00000016986	foxm1 (ENSPFOG00000016962)	rhno1 (ENSPFOG00000016961)	TULP3 (ENSPFOG00000016911)	ENSPFOG00000016905	ENSPFOG00000016883	ptn (ENSPFOG00000016870)	chrm2a (ENSPFOG00000016867)	ENSPFOG00000016863	ENSPFOG00000016861
Sailfin molly	MODERN SPECIES	9											cyb5r3 (ENSPLAG00000011214)	syt1a (ENSPLAG00000011246) #14	pawr (ENSPLAG00000011257) #16	ppp1r12a (ENSPLAG00000011399) #18	rps16 (ENSPLAG00000011432)	myf6 (ENSPLAG00000011443) #21	myf5 (ENSPLAG00000011536) #22	lin7a (ENSPLAG00000011553) #23	ACSS3 (ENSPLAG00000011623) #25	ppfia2 (ENSPLAG00000011834) #26	ENSPLAG00000011929	foxm1 (ENSPLAG00000011940)	rhno1 (ENSPLAG00000011951)	TULP3 (ENSPLAG00000011999)	ENSPLAG00000012034	ENSPLAG00000012066	ptn (ENSPLAG00000012078)	chrm2a (ENSPLAG00000012100)	ENSPLAG00000012114	ENSPLAG00000012137
NAME_4	ANCESTRAL SPECIES	16	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000162287.B.a.c	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a
Mummichog	MODERN SPECIES	2417										ENSFHEG00000021284	cyb5r3 (ENSFHEG00000021318)	syt1a (ENSFHEG00000021375) #14	pawr (ENSFHEG00000021387) #16	ppp1r12a (ENSFHEG00000021437) #18	rps16 (ENSFHEG00000021489)	myf6 (ENSFHEG00000021493) #21	myf5 (ENSFHEG00000021507) #22	lin7a (ENSFHEG00000021555) #23	ACSS3 (ENSFHEG00000021602) #25	ppfia2 (ENSFHEG00000021683) #26	ENSFHEG00000021695	foxm1 (ENSFHEG00000021721)	rhno1 (ENSFHEG00000021747)	ENSFHEG00000021764	ENSFHEG00000021805
Sheepshead minnow	MODERN SPECIES	119	parpbp (ENSCVAG00000015932)	ENSCVAG00000016009	igf1 (ENSCVAG00000016044)	ENSCVAG00000016092	ENSCVAG00000016098	btbd11a (ENSCVAG00000016113)	cry1a (ENSCVAG00000016128)	ENSCVAG00000016131	syt10 (ENSCVAG00000016202)	ENSCVAG00000016230	cyb5r3 (ENSCVAG00000016259)	syt1a (ENSCVAG00000016341) #14	pawr (ENSCVAG00000016350) #16	ppp1r12a (ENSCVAG00000016377) #18	rps16 (ENSCVAG00000016397)	myf6 (ENSCVAG00000016409) #21	myf5 (ENSCVAG00000016428) #22	lin7a (ENSCVAG00000016461) #23	ACSS3 (ENSCVAG00000016481) #25	ppfia2 (ENSCVAG00000016666) #26	ENSCVAG00000016685	foxm1 (ENSCVAG00000016692)	rhno1 (ENSCVAG00000016698)	ENSCVAG00000016726	ENSCVAG00000016742	ptn (ENSCVAG00000016747)	chrm2a (ENSCVAG00000016771)
Oryzias	ANCESTRAL SPECIES	20	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g.c	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a.d #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Oryzias_b	ANCESTRAL SPECIES	19	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g.c	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a.d #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Indian medaka	MODERN SPECIES	2	parpbp (ENSOMEG00000003398)	ENSOMEG00000003411	igf1 (ENSOMEG00000003424)	ENSOMEG00000003451	btbd11a (ENSOMEG00000003530)	cry1a (ENSOMEG00000003568)	ENSOMEG00000003581	tnnt2c (ENSOMEG00000003593)	syt10 (ENSOMEG00000003610)	ENSOMEG00000003669	cyb5r3 (ENSOMEG00000003698)	syt1a (ENSOMEG00000003714) #14	pawr (ENSOMEG00000003730) #16	ppp1r12a (ENSOMEG00000003801) #18	rps16 (ENSOMEG00000003840)	myf6 (ENSOMEG00000003855) #21	myf5 (ENSOMEG00000003862) #22	lin7a (ENSOMEG00000003884) #23	ACSS3 (ENSOMEG00000003964) #25	ppfia2 (ENSOMEG00000004094) #26	ENSOMEG00000004125	foxm1 (ENSOMEG00000004150)	ENSOMEG00000004155	TULP3 (ENSOMEG00000004185)	ENSOMEG00000004208	ptn (ENSOMEG00000000096)	chrm2a (ENSOMEG00000000098)	ENSOMEG00000004244	ENSOMEG00000004249	ENSOMEG00000004254	SEMA3C (ENSOMEG00000004303)
Javanese ricefish	MODERN SPECIES	15	parpbp (ENSOJAG00000023537)	ENSOJAG00000023539	igf1 (ENSOJAG00000023545)	ENSOJAG00000023553	btbd11a (ENSOJAG00000023574)	ENSOJAG00000023593	ENSOJAG00000023595	cry1a (ENSOJAG00000023629)	MTERF2 (ENSOJAG00000023694)	syt10 (ENSOJAG00000023697)	ENSOJAG00000023700	syt1a (ENSOJAG00000023710) #14	pawr (ENSOJAG00000023718) #16	ppp1r12a (ENSOJAG00000023721) #18	rps16 (ENSOJAG00000023733)	myf6 (ENSOJAG00000023735) #21	myf5 (ENSOJAG00000023736) #22	lin7a (ENSOJAG00000023737) #23	ACSS3 (ENSOJAG00000023742) #25	ppfia2 (ENSOJAG00000023762) #26	foxm1 (ENSOJAG00000023805)	ENSOJAG00000023806	ENSOJAG00000023808	ENSOJAG00000023813	ptn (ENSOJAG00000023820)	chrm2a (ENSOJAG00000023822)	ENSOJAG00000023823	ENSOJAG00000023825	ENSOJAG00000014770	nup50 (ENSOJAG00000014777)	kiaa0930 (ENSOJAG00000014799)
Oryzias_a	ANCESTRAL SPECIES	15	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g.c	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a.d #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.k.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	51	parpbp (ENSOSIG00000008240)	ENSOSIG00000008239	ENSOSIG00000008238	ENSOSIG00000008237	igf1 (ENSOSIG00000008154)	btbd11a (ENSOSIG00000008093)	cry1a (ENSOSIG00000007925)	MTERF2 (ENSOSIG00000007922)	tnnt2c (ENSOSIG00000007920)	syt10 (ENSOSIG00000007919)	ENSOSIG00000007916	ENSOSIG00000007911	syt1a (ENSOSIG00000007909) #14	pawr (ENSOSIG00000007906) #16	ppp1r12a (ENSOSIG00000007904) #18	myf6 (ENSOSIG00000007902) #21	myf5 (ENSOSIG00000007901) #22	lin7a (ENSOSIG00000007898) #23	ACSS3 (ENSOSIG00000007896) #25	RPS16 (ENSOSIG00000007851)	ppfia2 (ENSOSIG00000005522) #26	ENSOSIG00000005445	foxm1 (ENSOSIG00000005386)	ENSOSIG00000005383	ptn (ENSOSIG00000005378)	chrm2a (ENSOSIG00000005373)	ENSOSIG00000005369	SEMA3C (ENSOSIG00000005314)	cd36 (ENSOSIG00000005295)	ENSOSIG00000005228	ENSOSIG00000005174
Chinese medaka	MODERN SPECIES	52													pawr (ENSOSIG00000003677) #16	ppp1r12a (ENSOSIG00000003628) #18	rps16 (ENSOSIG00000003413)	myf6 (ENSOSIG00000003401) #21	myf5 (ENSOSIG00000003391) #22	lin7a (ENSOSIG00000003379) #23	ACSS3 (ENSOSIG00000022239) #25	ppfia2 (ENSOSIG00000022032) #26	ENSOSIG00000021947	ENSOSIG00000021938	ptn (ENSOSIG00000021933)	chrm2a (ENSOSIG00000021926)	ENSOSIG00000021920	ENSOSIG00000021442	cd36 (ENSOSIG00000021399)	ENSOSIG00000021381	ENSOSIG00000021252	si:dkey-97m3.1 (ENSOSIG00000021193)	ergic2 (ENSOSIG00000021149)
Japanese Medaka HdrR	MODERN SPECIES	15	ENSORLG00000016450	igf1 (ENSORLG00000016443)	ENSORLG00000027418	cox6b2 (ENSORLG00000016425)	btbd11a (ENSORLG00000016422)	ENSORLG00000016390	cry1a (ENSORLG00000016410)	tnnt2c (ENSORLG00000016386)	syt10 (ENSORLG00000016381)	ENSORLG00000016372	cyb5r3 (ENSORLG00000018656)	syt1a (ENSORLG00000016339) #14	pawr (ENSORLG00000026995) #16	ppp1r12a (ENSORLG00000016314) #18	rps16 (ENSORLG00000016271)	myf6 (ENSORLG00000016261) #21	myf5 (ENSORLG00000016257) #22	lin7a (ENSORLG00000030538) #23	ACSS3 (ENSORLG00000016249) #25	ppfia2 (ENSORLG00000016236) #26	ENSORLG00000016174	foxm1 (ENSORLG00000016140)	rhno1 (ENSORLG00000026209)	TULP3 (ENSORLG00000016129)	ENSORLG00000016118	ENSORLG00000024838	ptn (ENSORLG00000016099)	chrm2a (ENSORLG00000030214)	ENSORLG00000023855	ENSORLG00000029110	SEMA3C (ENSORLG00000016082)
Ovalentaria_B	ANCESTRAL SPECIES	23	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Pomacentridae	ANCESTRAL SPECIES	59	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00530000063817.b.b	ENSGT00940000155455.g	ENSGT00940000156419.b	ENSGT00940000154709.a.a	ENSGT00940000158899.bb.b	ENSGT00940000158899.cb	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Pomacentridae_A	ANCESTRAL SPECIES	58	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00530000063817.b.b	ENSGT00940000155455.g	ENSGT00940000156419.b	ENSGT00940000154709.a.a	ENSGT00940000158899.cb	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Amphiprion	ANCESTRAL SPECIES	19	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00530000063817.b.b	ENSGT00940000155455.g	ENSGT00940000156419.b	ENSGT00940000154709.a.a	ENSGT00940000158899.cb	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Orange clownfish	MODERN SPECIES	13	parpbp (ENSAPEG00000021705)	ENSAPEG00000021659	igf1 (ENSAPEG00000021610)	ENSAPEG00000021575	ENSAPEG00000021556	cry1a (ENSAPEG00000021519)	btbd11a (ENSAPEG00000021482)	tnnt2c (ENSAPEG00000021437)	syt10 (ENSAPEG00000021420)	ENSAPEG00000021411	cyb5r3 (ENSAPEG00000021367)	syt1a (ENSAPEG00000021322) #14	pawr (ENSAPEG00000021309) #16	ppp1r12a (ENSAPEG00000021244) #18	rps16 (ENSAPEG00000021214)	myf6 (ENSAPEG00000021158) #21	myf5 (ENSAPEG00000021137) #22	lin7a (ENSAPEG00000021115) #23	ACSS3 (ENSAPEG00000021054) #25	ppfia2 (ENSAPEG00000020985) #26	ENSAPEG00000020865	foxm1 (ENSAPEG00000020793)	rhno1 (ENSAPEG00000020771)	TULP3 (ENSAPEG00000020752)	ENSAPEG00000020727	ENSAPEG00000020705	ptn (ENSAPEG00000020677)	chrm2a (ENSAPEG00000020661)	mtpn (ENSAPEG00000020630)	ENSAPEG00000020602	SEMA3C (ENSAPEG00000020577)
Spiny chromis	MODERN SPECIES	1975															rps16 (ENSAPOG00000018869)	myf6 (ENSAPOG00000018965) #21	myf5 (ENSAPOG00000018995) #22	lin7a (ENSAPOG00000019025) #23	ACSS3 (ENSAPOG00000019111) #25
Bicolor damselfish	MODERN SPECIES	310												syt1a (ENSSPAG00000007874) #14	pawr (ENSSPAG00000007892) #16	ppp1r12a (ENSSPAG00000007917) #18	rps16 (ENSSPAG00000008089)	myf6 (ENSSPAG00000008107) #21	myf5 (ENSSPAG00000008117) #22	lin7a (ENSSPAG00000008137) #23	ACSS3 (ENSSPAG00000008160) #25	ppfia2 (ENSSPAG00000008238) #26	ENSSPAG00000008316	foxm1 (ENSSPAG00000008351)	rhno1 (ENSSPAG00000008397)	TULP3 (ENSSPAG00000008407)	ENSSPAG00000008458	ENSSPAG00000008474	ptn (ENSSPAG00000008499)	chrm2a (ENSSPAG00000008507)
Cichlidae	ANCESTRAL SPECIES	24	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00940000172707.b	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093.i	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Pseudocrenilabrinae	ANCESTRAL SPECIES	21	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00940000172707.b	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093.i	ENSGT00940000158804.m	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	10	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00940000172707.b	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093.i	ENSGT00940000158804.n	ENSGT00940000158804.m	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379
Haplochromini	ANCESTRAL SPECIES	9	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093.i	ENSGT00940000158804.n.b	ENSGT00940000158804.m	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379
Burton s mouthbrooder	MODERN SPECIES	326										ENSHBUG00000012255	cyb5r3 (ENSHBUG00000012236)	syt1a (ENSHBUG00000012192) #14	pawr (ENSHBUG00000012169) #16	ENSHBUG00000012146	rps16 (ENSHBUG00000011868)	myf6 (ENSHBUG00000011840) #21	myf5 (ENSHBUG00000011829) #22	lin7a (ENSHBUG00000000328) #23	ACSS3 (ENSHBUG00000011792) #25	ppfia2 (ENSHBUG00000011753) #26	ENSHBUG00000011518	foxm1 (ENSHBUG00000011509)	rhno1 (ENSHBUG00000011503)	foxm1 (ENSHBUG00000011493)	TULP3 (ENSHBUG00000011480)	ENSHBUG00000011412	ENSHBUG00000011400	ptn (ENSHBUG00000011360)	chrm2a (ENSHBUG00000011351)	mtpn (ENSHBUG00000011342)	ENSHBUG00000011331
Haplochromini_A	ANCESTRAL SPECIES	9	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093.i	ENSGT00940000158804.n.b	ENSGT00940000158804.m	ENSGT00730000112347	ENSGT00940000158155	ENSGT00940000155368.ab.a	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b
P. nyererei	MODERN SPECIES	399										ENSPNYG00000018682	cyb5r3 (ENSPNYG00000018648)	syt1a (ENSPNYG00000018615) #14	pawr (ENSPNYG00000018605) #16	ppp1r12a (ENSPNYG00000018399) #18	rps16 (ENSPNYG00000018328)	myf6 (ENSPNYG00000018314) #21	myf5 (ENSPNYG00000018301) #22	lin7a (ENSPNYG00000018284) #23	ACSS3 (ENSPNYG00000018233) #25	ppfia2 (ENSPNYG00000018167) #26	ENSPNYG00000018091	foxm1 (ENSPNYG00000018069)	rhno1 (ENSPNYG00000018048)	TULP3 (ENSPNYG00000018015)	ENSPNYG00000018003	ENSPNYG00000017991	ptn (ENSPNYG00000017983)	chrm2a (ENSPNYG00000017969)	mtpn (ENSPNYG00000017967)	ENSPNYG00000017958	SEMA3C (ENSPNYG00000017904)
Haplochromini_B	ANCESTRAL SPECIES	11	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000158804.n.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093.i	ENSGT00940000158804.n.b	ENSGT00940000158804.m	ENSGT00730000112347	ENSGT00940000158155	ENSGT00940000155368.ab.a	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b
Zebra mbuna	MODERN SPECIES	1099	parpbp (ENSMZEG00005001242)	pmch (ENSMZEG00005001251)	igf1 (ENSMZEG00005001284)	ENSMZEG00005001313	btbd11a (ENSMZEG00005001355)	cry1a (ENSMZEG00005001451)	MTERF2 (ENSMZEG00005001466)	syt10 (ENSMZEG00005001603)	ENSMZEG00005001628	cyb5r3 (ENSMZEG00005001636)	syt1a (ENSMZEG00005001660) #14	pawr (ENSMZEG00005001704) #16	ppp1r12a (ENSMZEG00005001744) #18	foxm1 (ENSMZEG00005001943)	rps16 (ENSMZEG00005001975)	myf6 (ENSMZEG00005001995) #21	myf5 (ENSMZEG00005002005) #22	lin7a (ENSMZEG00005002013) #23	ACSS3 (ENSMZEG00005002036) #25	ppfia2 (ENSMZEG00005002099) #26	ENSMZEG00005002179	foxm1 (ENSMZEG00005002229)	foxm1 (ENSMZEG00005002268)	rhno1 (ENSMZEG00005002308)	TULP3 (ENSMZEG00005002320)	ENSMZEG00005002354	ENSMZEG00005002378	opn5 (ENSMZEG00005002393)	ENSMZEG00005002407	cd2ap (ENSMZEG00005002420)	tnfrsf21 (ENSMZEG00005002452)
Eastern happy	MODERN SPECIES	8	parpbp (ENSACLG00000016788)	pmch (ENSACLG00000016802)	igf1 (ENSACLG00000016815)	ENSACLG00000016841	btbd11a (ENSACLG00000016936)	cry1a (ENSACLG00000017110)	MTERF2 (ENSACLG00000017181)	syt10 (ENSACLG00000017353)	ENSACLG00000017416	cyb5r3 (ENSACLG00000017472)	syt1a (ENSACLG00000017513) #14	pawr (ENSACLG00000017548) #16	ppp1r12a (ENSACLG00000017614) #18	foxm1 (ENSACLG00000017856)	rps16 (ENSACLG00000017963)	myf6 (ENSACLG00000017983) #21	myf5 (ENSACLG00000017991) #22	lin7a (ENSACLG00000018011) #23	ACSS3 (ENSACLG00000018059) #25	ppfia2 (ENSACLG00000018429) #26	ENSACLG00000018723	foxm1 (ENSACLG00000018814)	foxm1 (ENSACLG00000018922)	rhno1 (ENSACLG00000018940)	TULP3 (ENSACLG00000018961)	ENSACLG00000019033	ENSACLG00000019049	ptn (ENSACLG00000019074)	chrm2a (ENSACLG00000019090)	mtpn (ENSACLG00000019115)	ENSACLG00000019126
Lyretail cichlid	MODERN SPECIES	291	ENSNBRG00000010987	btbd11a (ENSNBRG00000010944)	ENSNBRG00000010937	MTERF2 (ENSNBRG00000010933)	cry1a (ENSNBRG00000010898)	tnnt2c (ENSNBRG00000010879)	syt10 (ENSNBRG00000010856)	ENSNBRG00000010848	ENSNBRG00000010794	cyb5r3 (ENSNBRG00000010756)	syt1a (ENSNBRG00000010739) #14	pawr (ENSNBRG00000010725) #16	ppp1r12a (ENSNBRG00000010670) #18	ENSNBRG00000010659	rps16 (ENSNBRG00000010637)	myf6 (ENSNBRG00000010629) #21	myf5 (ENSNBRG00000010621) #22	lin7a (ENSNBRG00000010602) #23	ENSNBRG00000010588	ACSS3 (ENSNBRG00000010540) #25	ppfia2 (ENSNBRG00000010460) #26	ENSNBRG00000010443	foxm1 (ENSNBRG00000010396)	ENSNBRG00000010385	TULP3 (ENSNBRG00000010353)	ENSNBRG00000010331	ENSNBRG00000010318	ptn (ENSNBRG00000010305)	chrm2a (ENSNBRG00000010300)	mtpn (ENSNBRG00000010292)	ENSNBRG00000010278
Nile tilapia	MODERN SPECIES	8	igf1 (ENSONIG00000017800)	ENSONIG00000017799	btbd11a (ENSONIG00000017796)	cry1a (ENSONIG00000000075)	MTERF2 (ENSONIG00000020695)	tnnt2c (ENSONIG00000020696)	ENSONIG00000000001	syt10 (ENSONIG00000000002)	syt1a (ENSONIG00000000003) #14	pawr (ENSONIG00000028232) #16	ppp1r12a (ENSONIG00000000005) #18	foxm1 (ENSONIG00000027574)	foxm1 (ENSONIG00000000082)	ENSONIG00000031149	rps16 (ENSONIG00000000006)	myf6 (ENSONIG00000000007) #21	myf5 (ENSONIG00000038625) #22	lin7a (ENSONIG00000000078) #23	ACSS3 (ENSONIG00000000079) #25	ppfia2 (ENSONIG00000000080) #26	ENSONIG00000000081	foxm1 (ENSONIG00000042685)	rhno1 (ENSONIG00000000083)	TULP3 (ENSONIG00000000084)	ENSONIG00000030976	ENSONIG00000000085	ptn (ENSONIG00000000086)	chrm2a (ENSONIG00000020697)	ENSONIG00000030324	mtpn (ENSONIG00000041390)	ENSONIG00000000088
Midas cichlid	MODERN SPECIES	1331													pawr (ENSACIG00000013438) #16	ppp1r12a (ENSACIG00000013397) #18	rps16 (ENSACIG00000013386)	myf6 (ENSACIG00000013331) #21	myf5 (ENSACIG00000013314) #22	lin7a (ENSACIG00000013298) #23	ACSS3 (ENSACIG00000013258) #25	ppfia2 (ENSACIG00000013195) #26	ENSACIG00000013105
Percomorphaceae_C	ANCESTRAL SPECIES	22	ENSGT00840000130048.b	ENSGT00940000172707.b	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Percomorphaceae_D	ANCESTRAL SPECIES	22	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Carangaria	ANCESTRAL SPECIES	22	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Pleuronectoidei	ANCESTRAL SPECIES	16	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT00940000155368	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Tongue sole	MODERN SPECIES	18	nrip2 (ENSCSEG00000004633)	klhl42 (ENSCSEG00000004627)	elapor2b (ENSCSEG00000004623)	tspan9b (ENSCSEG00000004608)	amdhd1 (ENSCSEG00000004613)	cry1a (ENSCSEG00000004597)	MTERF2 (ENSCSEG00000004606)	syt10 (ENSCSEG00000004582)	ENSCSEG00000004570	cyb5r3 (ENSCSEG00000004558)	syt1a (ENSCSEG00000004537) #14	pawr (ENSCSEG00000004529) #16	ppp1r12a (ENSCSEG00000004475) #18	rps16 (ENSCSEG00000004454)	rps16 (ENSCSEG00000004450)	myf6 (ENSCSEG00000004440) #21	myf5 (ENSCSEG00000004433) #22	lin7a (ENSCSEG00000004421) #23	ACSS3 (ENSCSEG00000004396) #25	TMEM19 (ENSCSEG00000004390)	kics2 (ENSCSEG00000004388)	srgap1b (ENSCSEG00000004374)	AVPR1A (ENSCSEG00000004367)	acot14 (ENSCSEG00000004355)	ENSCSEG00000004343	ENSCSEG00000004334	cwf19l1 (ENSCSEG00000004325)	dmtf1 (ENSCSEG00000004319)	tmem243b (ENSCSEG00000004311)	meig1 (ENSCSEG00000004307)	dclre1c (ENSCSEG00000004303)
Turbot	MODERN SPECIES	11	parpbp (ENSSMAG00000005145)	pmch (ENSSMAG00000022672)	igf1 (ENSSMAG00000005115)	ENSSMAG00000030625	ENSSMAG00000005081	btbd11a (ENSSMAG00000005012)	ENSSMAG00000004964	ENSSMAG00000005003	tnnt2c (ENSSMAG00000004942)	ENSSMAG00000004931	ENSSMAG00000004880	ENSSMAG00000004819	ENSSMAG00000004787 #14	ENSSMAG00000004775 #16	ENSSMAG00000032576	myf6 (ENSSMAG00000024612) #21	myf5 (ENSSMAG00000004563) #22	ENSSMAG00000004633 #18	lin7a (ENSSMAG00000004519) #23	ACSS3 (ENSSMAG00000004487) #25	ppfia2 (ENSSMAG00000004417) #26	ENSSMAG00000030237	ENSSMAG00000032625	ENSSMAG00000004385	rhno1 (ENSSMAG00000032963)	ENSSMAG00000004338	ENSSMAG00000004364	ENSSMAG00000004315	ptn (ENSSMAG00000004300)	chrm2a (ENSSMAG00000004285)	mtpn (ENSSMAG00000026919)
Carangaria_A	ANCESTRAL SPECIES	21	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Barramundi perch	MODERN SPECIES	34	GCNT4 (ENSLCAG00010004017)	hmgcrb (ENSLCAG00010003972)	CERT1 (ENSLCAG00010003603)	SV2C (ENSLCAG00010003544)	F2RL2 (ENSLCAG00010003542)	f2r2.1 (ENSLCAG00010003537)	f2rl1.1 (ENSLCAG00010003533)	f2rl1.2 (ENSLCAG00010003531)	ch25hl2 (ENSLCAG00010003527)	ENSLCAG00010003294	cyb5r3 (ENSLCAG00010003205)	syt1a (ENSLCAG00010003197) #14	pawr (ENSLCAG00010003184) #16	ppp1r12a (ENSLCAG00010003115) #18	rps16 (ENSLCAG00010003081)	myf6 (ENSLCAG00010003076) #21	myf5 (ENSLCAG00010003070) #22	lin7a (ENSLCAG00010003066) #23	ACSS3 (ENSLCAG00010003060) #25
Seriola	ANCESTRAL SPECIES	9	ENSGT00530000064318	ENSGT00730000111164	ENSGT00390000012080	ENSGT00530000063539.b	ENSGT01020000230394.e.a.a.a.a.b	ENSGT00940000156680.b	ENSGT00990000203615.a.a.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b.c	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Yellowtail amberjack	MODERN SPECIES	2908									ENSSLDG00000019169	cyb5r3 (ENSSLDG00000019154)	syt1a (ENSSLDG00000019130) #14	pawr (ENSSLDG00000019114) #16	ENSSLDG00000019080 #18	ppp1r12a (ENSSLDG00000019041) #18	rps16 (ENSSLDG00000019014)	myf6 (ENSSLDG00000018996) #21	myf5 (ENSSLDG00000018969) #22	lin7a (ENSSLDG00000018950) #23	ACSS3 (ENSSLDG00000018882) #25	ppfia2 (ENSSLDG00000018811) #26	ENSSLDG00000018758	ENSSLDG00000018608	foxm1 (ENSSLDG00000018534)	rhno1 (ENSSLDG00000018518)	TULP3 (ENSSLDG00000018502)	ENSSLDG00000018485	ptn (ENSSLDG00000018471)	chrm2a (ENSSLDG00000018456)	mtpn (ENSSLDG00000018435)	ENSSLDG00000018423	ENSSLDG00000018412
Greater amberjack	MODERN SPECIES	60	ENSSDUG00000017218	UPF2 (ENSSDUG00000017244)	slc35e3 (ENSSDUG00000017364)	nup107 (ENSSDUG00000017402)	mdm2 (ENSSDUG00000017495)	plxnb2a.1 (ENSSDUG00000017517)	abcc9 (ENSSDUG00000017622)	kcnj8 (ENSSDUG00000017965)	syt10 (ENSSDUG00000018002)	ENSSDUG00000018031	cyb5r3 (ENSSDUG00000018106)	syt1a (ENSSDUG00000018131) #14	pawr (ENSSDUG00000018156) #16	ppp1r12a (ENSSDUG00000018184) #18	rps16 (ENSSDUG00000018274)	myf6 (ENSSDUG00000018309) #21	myf5 (ENSSDUG00000018287) #22	lin7a (ENSSDUG00000018320) #23	ACSS3 (ENSSDUG00000018359) #25	ppfia2 (ENSSDUG00000018476) #26	ENSSDUG00000018657	foxm1 (ENSSDUG00000018732)	rhno1 (ENSSDUG00000018757)	TULP3 (ENSSDUG00000018775)	ENSSDUG00000018796	ENSSDUG00000018819	ptn (ENSSDUG00000018862)	ENSSDUG00000018870	chrm2a (ENSSDUG00000018876)	mtpn (ENSSDUG00000018885)	ENSSDUG00000018905
Anabantaria	ANCESTRAL SPECIES	21	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00940000163513	ENSGT00950000183169.A.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Zig-zag eel	MODERN SPECIES	15	parpbp (ENSMAMG00000016003)	pmch (ENSMAMG00000015727)	igf1 (ENSMAMG00000015704)	ENSMAMG00000015670	btbd11a (ENSMAMG00000015616)	ENSMAMG00000015580	tnnt2c (ENSMAMG00000015546)	ENSMAMG00000015509	ENSMAMG00000024270	ENSMAMG00000015433	ENSMAMG00000015393	ENSMAMG00000015373 #14	ENSMAMG00000015337 #16	ppp1r12a (ENSMAMG00000015240) #18	ENSMAMG00000015224	myf6 (ENSMAMG00000015217) #21	myf5 (ENSMAMG00000015202) #22	lin7a (ENSMAMG00000015174) #23	ACSS3 (ENSMAMG00000015114) #25	ppfia2 (ENSMAMG00000014966) #26	ENSMAMG00000014909	ENSMAMG00000014899	rhno1 (ENSMAMG00000014885)	ENSMAMG00000014877	ENSMAMG00000014845	ptn (ENSMAMG00000014825)	chrm2a (ENSMAMG00000025277)	mtpn (ENSMAMG00000014764)	ENSMAMG00000014753	ENSMAMG00000014716	ENSMAMG00000014241
Anabantoidei	ANCESTRAL SPECIES	21	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00940000163513	ENSGT00950000183169.A.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000157779	ENSGT00940000158580	ENSGT01040000240400.c.a.b.a.a.d.a.b.b	ENSGT00940000155878	ENSGT00940000168658	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT01040000240400.c.a.b.a.a.d.a.b.a	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831
Siamese fighting fish	MODERN SPECIES	20	th2 (ENSBSLG00000006132)	nup37 (ENSBSLG00000006190)	parpbp (ENSBSLG00000006209)	pmch (ENSBSLG00000006216)	igf1 (ENSBSLG00000006224)	ENSBSLG00000006232	btbd11a (ENSBSLG00000006250)	cry1a (ENSBSLG00000007173)	syt10 (ENSBSLG00000007302)	ENSBSLG00000007321	cyb5r3 (ENSBSLG00000007400)	syt1a (ENSBSLG00000007799) #14	pawr (ENSBSLG00000007919) #16	ppp1r12a (ENSBSLG00000007997) #18	rps16 (ENSBSLG00000008793)	myf6 (ENSBSLG00000008938) #21	myf5 (ENSBSLG00000008998) #22	LIN7B (ENSBSLG00000009073) ##23	ACSS3 (ENSBSLG00000009122) #25	ppfia2 (ENSBSLG00000009838) #26	dclre1c (ENSBSLG00000010562)	cpm (ENSBSLG00000010758)	ENSBSLG00000010788	TRHDE (ENSBSLG00000010858)	ENSBSLG00000011190	ENSBSLG00000011210	ENSBSLG00000011225	ENSBSLG00000011241	dyrk2 (ENSBSLG00000011249)	ENSBSLG00000011257	ENSBSLG00000011261
Climbing perch	MODERN SPECIES	14	pmch (ENSATEG00000022998)	igf1 (ENSATEG00000023026)	ENSATEG00000023044	ENSATEG00000029039	btbd11a (ENSATEG00000023064)	ENSATEG00000023083	tnnt2c (ENSATEG00000023096)	ENSATEG00000023107	ENSATEG00000026602	ENSATEG00000023121	ENSATEG00000023152	ENSATEG00000023170 #14	ENSATEG00000023210 #16	ENSATEG00000023226 #18	ENSATEG00000023236	myf6 (ENSATEG00000023242) #21	myf5 (ENSATEG00000023249) #22	lin7a (ENSATEG00000023252) #23	ACSS3 (ENSATEG00000023260) #25	ppfia2 (ENSATEG00000023284) #26	ENSATEG00000023298	ENSATEG00000025485	ENSATEG00000023308	ENSATEG00000023314	ENSATEG00000023329	ENSATEG00000023340	ENSATEG00000023343	ENSATEG00000029926	ENSATEG00000028577	ENSATEG00000023359	dyrk2 (ENSATEG00000023365)
Eupercaria	ANCESTRAL SPECIES	21	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Tetraodontidae	ANCESTRAL SPECIES	17	ENSGT01030000234578.B.a	ENSGT00390000006747	ENSGT00950000183117.a.a	ENSGT00940000158254	ENSGT00940000155067.b.a	ENSGT00940000155067.a	ENSGT00390000002730.e.b	ENSGT00950000183113.b.b.c.b	ENSGT00940000160161.e.a	ENSGT00940000153414.A	ENSGT00940000157821.h.a	ENSGT00940000160821	ENSGT00940000163946.a	ENSGT00940000155180.b.b	ENSGT00940000165907	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479.f #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00390000006367.c	ENSGT00940000155057.wb	ENSGT00940000153567.a.a.a	ENSGT00940000153372.A.f	ENSGT00940000159379	ENSGT00940000168487	ENSGT00940000158940.a	ENSGT00390000007640.a	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00940000158155	ENSGT00730000112347
Fugu	MODERN SPECIES	9	dram1 (ENSTRUG00000032116)	gnptab (ENSTRUG00000012120)	chpt1 (ENSTRUG00000011969)	mybpc1 (ENSTRUG00000011461)	ENSTRUG00000031004	spic (ENSTRUG00000011424)	atp6v1e1b (ENSTRUG00000011314)	ADA2 (ENSTRUG00000011247)	GALNT8 (ENSTRUG00000011109)	rad51ap1 (ENSTRUG00000024004)	fgf6b (ENSTRUG00000011078)	fgf23 (ENSTRUG00000011062)	tigarb (ENSTRUG00000011015)	ccnd2b (ENSTRUG00000010895)	ENSTRUG00000010878	myf6 (ENSTRUG00000010842) #21	myf5 (ENSTRUG00000010781) #22	lin7a (ENSTRUG00000010674) #23	ACSS3 (ENSTRUG00000010633) #25	ppfia2 (ENSTRUG00000016246) #26	si:dkey-97m3.1 (ENSTRUG00000016219)	ENSTRUG00000016140	ENSTRUG00000016110	SEMA3C (ENSTRUG00000015957)	mtpn (ENSTRUG00000030378)	chrm2a (ENSTRUG00000020657)	ptn (ENSTRUG00000015924)	ENSTRUG00000015891	ENSTRUG00000029244	TULP3 (ENSTRUG00000015873)	rhno1 (ENSTRUG00000022380)
Tetraodon	MODERN SPECIES	11	ENSTNIG00000011420	ENSTNIG00000011419	washc3 (ENSTNIG00000011417)	dram1 (ENSTNIG00000001389)	gnptab (ENSTNIG00000011416)	chpt1 (ENSTNIG00000011415)	mybpc1 (ENSTNIG00000011414)	spic (ENSTNIG00000000056)	atp6v1e1b (ENSTNIG00000011413)	ADA2 (ENSTNIG00000011412)	fgf6b (ENSTNIG00000011411)	fgf23 (ENSTNIG00000011410)	tigarb (ENSTNIG00000001586)	CCND2 (ENSTNIG00000011409)	ENSTNIG00000011408	myf6 (ENSTNIG00000011407) #21	myf5 (ENSTNIG00000011406) #22	LIN7B (ENSTNIG00000011405) ##23	ENSTNIG00000000595 #25	ppfia2 (ENSTNIG00000011404) #26	si:dkey-97m3.1 (ENSTNIG00000011403)	ENSTNIG00000011402	ENSTNIG00000011401	cd36 (ENSTNIG00000011400)	SEMA3C (ENSTNIG00000011399)	ENSTNIG00000011398	chrm2a (ENSTNIG00000011397)	ptn (ENSTNIG00000011396)	ENSTNIG00000002223	foxm1 (ENSTNIG00000011394)	ENSTNIG00000011393
Eupecaria_A	ANCESTRAL SPECIES	21	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Ballan wrasse	MODERN SPECIES	288	mcat (ENSLBEG00000021435)	ENSLBEG00000021449	ttll1 (ENSLBEG00000021464)	pacsin2 (ENSLBEG00000021510)	arfgap3 (ENSLBEG00000021563)	IKBIP (ENSLBEG00000021638)	ENSLBEG00000021657	tnnt2c (ENSLBEG00000021670)	syt10 (ENSLBEG00000021731)	ENSLBEG00000021784	cyb5r3 (ENSLBEG00000021856)	syt1a (ENSLBEG00000021895) #14	pawr (ENSLBEG00000021925) #16	ppp1r12a (ENSLBEG00000021962) #18	rps16 (ENSLBEG00000022009)	myf6 (ENSLBEG00000022039) #21	myf5 (ENSLBEG00000022115) #22	lin7a (ENSLBEG00000022140) #23	ACSS3 (ENSLBEG00000022189) #25
Eupecaria_B	ANCESTRAL SPECIES	21	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Perciformes	ANCESTRAL SPECIES	18	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Perciformes_a	ANCESTRAL SPECIES	19	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Channel bull blenny	MODERN SPECIES	15	ndufa12 (ENSCGOG00000022941)	TMCC3 (ENSCGOG00000022948)	eri1 (ENSCGOG00000022952)	LAMB1 (ENSCGOG00000022966)	dclre1c (ENSCGOG00000023371)	meig1 (ENSCGOG00000023503)	tmem243b (ENSCGOG00000023504)	tnnt2c (ENSCGOG00000002697)	syt10 (ENSCGOG00000002710)	ENSCGOG00000002901	cyb5r3 (ENSCGOG00000005612)	syt1a (ENSCGOG00000005760) #14	pawr (ENSCGOG00000005900) #16	ppp1r12a (ENSCGOG00000005924) #18	rps16 (ENSCGOG00000006422)	myf6 (ENSCGOG00000006445) #21	myf5 (ENSCGOG00000006451) #22	lin7a (ENSCGOG00000006454) #23	ACSS3 (ENSCGOG00000006462) #25	ppfia2 (ENSCGOG00000006725) #26	ENSCGOG00000011470	foxm1 (ENSCGOG00000012088)	rhno1 (ENSCGOG00000012090)	TULP3 (ENSCGOG00000012093)	ENSCGOG00000012109	ptn (ENSCGOG00000012115)	chrm2a (ENSCGOG00000012120)	mtpn (ENSCGOG00000012123)	ENSCGOG00000012127	SEMA3C (ENSCGOG00000012145)	cd36 (ENSCGOG00000012920)
Pike perch	MODERN SPECIES	28	parpbp (ENSSLUG00000005238)	pmch (ENSSLUG00000005227)	IGF-I (ENSSLUG00000004805)	ENSSLUG00000004758	btbd11a (ENSSLUG00000004616)	cry1a (ENSSLUG00000003675)	MTERF2 (ENSSLUG00000003583)	syt10 (ENSSLUG00000003569)	ENSSLUG00000003558	ENSSLUG00000002793	cyb5r3 (ENSSLUG00000002598)	syt1a (ENSSLUG00000002503) #14	pawr (ENSSLUG00000002488) #16	ppp1r12a (ENSSLUG00000002356) #18	rps16 (ENSSLUG00000002321)	myf6 (ENSSLUG00000002312) #21	Myf5 (ENSSLUG00000002308) #22	lin7a (ENSSLUG00000002301) #23	ACSS3 (ENSSLUG00000001953) #25	ppfia2 (ENSSLUG00000001812) #26	ENSSLUG00000001721	washc3 (ENSSLUG00000001679)	dram1 (ENSSLUG00000001669)	gnptab (ENSSLUG00000001622)	chpt1 (ENSSLUG00000020879)	mybpc1 (ENSSLUG00000018517)	ENSSLUG00000018418	spic (ENSSLUG00000018413)	atp6v1e1b (ENSSLUG00000018403)	ADA2 (ENSSLUG00000018400)	GALNT8 (ENSSLUG00000018206)
Cottioidei	ANCESTRAL SPECIES	19	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT00980000202035	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379
Stickleback	MODERN SPECIES	3	parpbp (ENSGACG00000020045)	ENSGACG00000020044	igf1 (ENSGACG00000020042)	ENSGACG00000020041	btbd11a (ENSGACG00000020040)	cry1a (ENSGACG00000020037)	ENSGACG00000020036	tnnt2c (ENSGACG00000020034)	syt10 (ENSGACG00000020031)	ENSGACG00000020026	cyb5r3 (ENSGACG00000020019)	syt1a (ENSGACG00000020017) #14	pawr (ENSGACG00000020015) #16	ppp1r12a (ENSGACG00000020012) #18	rps16 (ENSGACG00000020009)	myf6 (ENSGACG00000020008) #21	lin7a (ENSGACG00000020007) #23	ACSS3 (ENSGACG00000019999) #25	ppfia2 (ENSGACG00000019995) #26	ENSGACG00000019993	llph (ENSGACG00000019992)	hcls1 (ENSGACG00000019990)	ENSGACG00000019988	ENSGACG00000019987	guca1a (ENSGACG00000019986)	orc5 (ENSGACG00000019984)	lhfpl3 (ENSGACG00000019981)	ENSGACG00000019979	ndufb2 (ENSGACG00000019977)	KDM7A (ENSGACG00000019975)	ergic2 (ENSGACG00000019973)
Lumpfish	MODERN SPECIES	15	ENSCLMG00005010600	ENSCLMG00005010584	ENSCLMG00005022740	FUT9 (ENSCLMG00005022735)	tcp11l2 (ENSCLMG00005022733)	ppp1r12a (ENSCLMG00005022725) #18	pawr (ENSCLMG00005022721) #16	ENSCLMG00005022719	syt1a (ENSCLMG00005022718) #14	cyb5r3 (ENSCLMG00005022705)	ENSCLMG00005022685	ENSCLMG00005022678	syt10 (ENSCLMG00005022677)	tnnt2c (ENSCLMG00005022676)	rps16 (ENSCLMG00005022675)	myf6 (ENSCLMG00005022674) #21	myf5 (ENSCLMG00005022673) #22	lin7a (ENSCLMG00005022672) #23	ACSS3 (ENSCLMG00005022661) #25	ppfia2 (ENSCLMG00005022654) #26	ENSCLMG00005022642	foxm1 (ENSCLMG00005022640)	rhno1 (ENSCLMG00005022638)	TULP3 (ENSCLMG00005022637)	ENSCLMG00005022636	ENSCLMG00005022635	ptn (ENSCLMG00005022634)	chrm2a (ENSCLMG00005022632)	mtpn (ENSCLMG00005022629)	ENSCLMG00005022627	SEMA3C (ENSCLMG00005022619)
Eupecaria_C	ANCESTRAL SPECIES	18	ENSGT00940000159081	ENSGT01100000263491.a.b.a.a.a.a.b.s.b	ENSGT00400000022326.b.a.b.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT00980000202035	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379
Gilthead seabream	MODERN SPECIES	5	parpbp (ENSSAUG00010015235)	pmch (ENSSAUG00010015234)	igf1 (ENSSAUG00010015109)	ENSSAUG00010015101	btbd11a (ENSSAUG00010014766)	cry1a (ENSSAUG00010012268)	ENSSAUG00010012243	tnnt2c (ENSSAUG00010012240)	syt10 (ENSSAUG00010012236)	ENSSAUG00010020501	cyb5r3 (ENSSAUG00010020421)	syt1a (ENSSAUG00010020377) #14	pawr (ENSSAUG00010020373) #16	ppp1r12a (ENSSAUG00010020166) #18	rps16 (ENSSAUG00010020153)	myf6 (ENSSAUG00010020152) #21	myf5 (ENSSAUG00010020150) #22	lin7a (ENSSAUG00010020149) #23	ACSS3 (ENSSAUG00010019831) #25	ppfia2 (ENSSAUG00010017685) #26	ENSSAUG00010017530	foxm1 (ENSSAUG00010017515)	rhno1 (ENSSAUG00010017512)	ENSSAUG00010017509	TULP3 (ENSSAUG00010017500)	ENSSAUG00010017491	ENSSAUG00010017488	ENSSAUG00010017483	ENSSAUG00010017479	ENSSAUG00010017476	ptn (ENSSAUG00010017470)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	22	ENSGT00940000159081	ENSGT01100000263491.a.b.a.a.a.a.b.s.b	ENSGT00400000022326.b.a.b.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
European seabass	MODERN SPECIES	23	th2 (ENSDLAG00005023520)	pah (ENSDLAG00005022732)	ENSDLAG00005022698	ENSDLAG00005027036	ENSDLAG00005022693	ENSDLAG00005022472	ENSDLAG00005022457	ENSDLAG00005022452	ENSDLAG00005022430	ENSDLAG00005022300	ENSDLAG00005022253	ENSDLAG00005022245 #14	PAWR (ENSDLAG00005022241) #16	ppp1r12a (ENSDLAG00005028115) #18	ENSDLAG00005022222	myf6 (ENSDLAG00005034355) #21	myf5 (ENSDLAG00005022213) #22	lin7a (ENSDLAG00005031546) #23	ACSS3 (ENSDLAG00005021975) #25	ppfia2 (ENSDLAG00005020955) #26	ENSDLAG00005020737	ENSDLAG00005020722	ENSDLAG00005020708	ENSDLAG00005028213	ptn (ENSDLAG00005020678)	chrm2a (ENSDLAG00005032814)	mtpn (ENSDLAG00005027317)	ENSDLAG00005026666	ENSDLAG00005020518	CD36 (ENSDLAG00005020211)	ENSDLAG00005020099
Large yellow croaker	MODERN SPECIES	491	ENSLCRG00005017539	btbd11a (ENSLCRG00005017547)	cry1a (ENSLCRG00005017690)	MTERF2 (ENSLCRG00005017798)	tnnt2c (ENSLCRG00005017799)	syt10 (ENSLCRG00005017801)	ENSLCRG00005017806	cyb5r3 (ENSLCRG00005017871)	syt1a (ENSLCRG00005018056) #14	ENSLCRG00005018060	ENSLCRG00005018062	pawr (ENSLCRG00005018063) #16	ENSLCRG00005018065	ppp1r12a (ENSLCRG00005018071) #18	rps16 (ENSLCRG00005018085)	myf6 (ENSLCRG00005018091) #21	myf5 (ENSLCRG00005018093) #22	lin7a (ENSLCRG00005018096) #23	ACSS3 (ENSLCRG00005018098) #25	ppfia2 (ENSLCRG00005018255) #26	ENSLCRG00005019228	foxm1 (ENSLCRG00005019230)	rhno1 (ENSLCRG00005019231)	TULP3 (ENSLCRG00005019232)	ENSLCRG00005019233	ENSLCRG00005019241	eri1 (ENSLCRG00005019243)	dclre1c (ENSLCRG00005019246)	meig1 (ENSLCRG00005019249)	tmem243b (ENSLCRG00005010956)	ENSLCRG00005010957
Cod	MODERN SPECIES	10	ENSGMOG00000024460	ENSGMOG00000001796	ENSGMOG00000033135	ENSGMOG00000025896	ENSGMOG00000028214	ENSGMOG00000033285	ENSGMOG00000020106	ENSGMOG00000025216	ENSGMOG00000028316	ENSGMOG00000022683	ENSGMOG00000024377	ENSGMOG00000033325	ENSGMOG00000025784	ENSGMOG00000029095	ENSGMOG00000028669	myf6 (ENSGMOG00000025107) #21	myf5 (ENSGMOG00000016963) #22	lin7a (ENSGMOG00000009243) #23	ACSS3 (ENSGMOG00000015350) #25	ppfia2 (ENSGMOG00000015273) #26	ENSGMOG00000028792	ENSGMOG00000026403	ENSGMOG00000012976	ENSGMOG00000033609	ENSGMOG00000010827	ENSGMOG00000010761	ENSGMOG00000035710	ENSGMOG00000019538	ENSGMOG00000030401	ENSGMOG00000014077	ENSGMOG00000013785
Otomorpha	ANCESTRAL SPECIES	204	ENSGT00390000018775	ENSGT00940000156038.b	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00510000047886.b	ENSGT00940000158014 #12	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.k.a	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h
Clupeiformes	ANCESTRAL SPECIES	62	ENSGT00390000018775	ENSGT00940000156038.b	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00510000047886.b	ENSGT00940000158014 #12	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.k.a	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000172289	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00940000159750	ENSGT00940000154814.b	ENSGT00940000156403.b
Atlantic herring	MODERN SPECIES	7	ENSCHAG00000004579	bmpr2a (ENSCHAG00000004641)	ENSCHAG00000005504	slc15a1b (ENSCHAG00000011257)	ENSCHAG00000011604	nr4a2b (ENSCHAG00000011794)	gpd2 (ENSCHAG00000011812)	ENSCHAG00000012171	optn (ENSCHAG00000012181)	ccdc3a (ENSCHAG00000012193)	camk1da (ENSCHAG00000012217)	cdc123 (ENSCHAG00000012817)	ENSCHAG00000012859	TIMM22 (ENSCHAG00000012880)	ENSCHAG00000012890	myf6 (ENSCHAG00000012902) #21	myf5 (ENSCHAG00000012907) #22	lin7a (ENSCHAG00000012925) #23	ACSS3 (ENSCHAG00000012966) #25	ENSCHAG00000013958	ENSCHAG00000013985	ppfia2 (ENSCHAG00000014083) #26	ENSCHAG00000017004	ENSCHAG00000017023	ENSCHAG00000017045	NUAK1 (ENSCHAG00000017150)	prl2 (ENSCHAG00000017173)	MID1 (ENSCHAG00000017268)	ARHGAP6 (ENSCHAG00000017388)	MSL3 (ENSCHAG00000017515)	ENSCHAG00000017610
Denticle herring	MODERN SPECIES	6	nap1l1 (ENSDCDG00000022045)	OSBPL8 (ENSDCDG00000022762) #7	zdhhc17 (ENSDCDG00000026306) #9	csrp2 (ENSDCDG00000026322) #10	e2f7 (ENSDCDG00000026324) #11	ENSDCDG00000026325	ENSDCDG00000026326	ENSDCDG00000026328	ENSDCDG00000026331	nav3 (ENSDCDG00000026354) #12	syt1a (ENSDCDG00000027575) #14	ENSDCDG00000027582	pawr (ENSDCDG00000027583) #16	ppp1r12a (ENSDCDG00000027584) #18	rps16 (ENSDCDG00000027593)	myf6 (ENSDCDG00000027598) #21	myf5 (ENSDCDG00000027600) #22	lin7a (ENSDCDG00000027602) #23	ACSS3 (ENSDCDG00000027609) #25	ppfia2 (ENSDCDG00000027692) #26	ENSDCDG00000030343	llph (ENSDCDG00000030344)	hcls1 (ENSDCDG00000030354)	ENSDCDG00000030434	guca1a (ENSDCDG00000030436)	orc5 (ENSDCDG00000030439)	lhfpl3 (ENSDCDG00000030443)	DNAH6 (ENSDCDG00000030470)	ENSDCDG00000030792	si:cabz01085950.1 (ENSDCDG00000030919)	PTPRO (ENSDCDG00000030969)
Otophysi	ANCESTRAL SPECIES	40	ENSGT00940000160727	ENSGT00390000018775	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00510000047886.b	ENSGT00940000158014 #12	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00940000159379	ENSGT00940000153372.A.f
Characiphysae	ANCESTRAL SPECIES	67	ENSGT00440000034107.b	ENSGT00390000010830	ENSGT00940000165853	ENSGT00390000018775	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000158014 #12	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a.l #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00990000204681	ENSGT00940000158039.h	ENSGT00940000159379
Characiphysae_b	ANCESTRAL SPECIES	161											ENSGT00940000158014 #12	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a.l #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00940000159379	ENSGT00940000153372.A.f
Characoidei	ANCESTRAL SPECIES	182											ENSGT00940000158014 #12	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a.l #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00940000159379	ENSGT00940000153372.A.f
Red-bellied piranha	MODERN SPECIES	150						ENSPNAG00000012785	ENSPNAG00000012773	nav3 (ENSPNAG00000002385) #12	syt1a (ENSPNAG00000012718) #14	ENSPNAG00000012666	pawr (ENSPNAG00000012658) #16	ppp1r12a (ENSPNAG00000012652) #18	ENSPNAG00000012615	rps16 (ENSPNAG00000002321)	ENSPNAG00000012596	myf6 (ENSPNAG00000012583) #21	myf5 (ENSPNAG00000007179) #22	lin7a (ENSPNAG00000012563) #23	ACSS3 (ENSPNAG00000002283) #25	ppfia2 (ENSPNAG00000006898) #26	ENSPNAG00000002170
Mexicana tetra	MODERN SPECIES	22	ENSAMXG00000036150	ost4 (ENSAMXG00000025270)	ENSAMXG00000043766	agbl5 (ENSAMXG00000001121)	tmem214 (ENSAMXG00000001600)	ENSAMXG00000030619	ENSAMXG00000036395	ENSAMXG00000039430	ENSAMXG00000036999	nav3 (ENSAMXG00000016811) #12	ENSAMXG00000036051	syt1a (ENSAMXG00000000351) #14	pawr (ENSAMXG00000039462) #16	ppp1r12a (ENSAMXG00000000386) #18	rps16 (ENSAMXG00000033866)	myf6 (ENSAMXG00000000425) #21	myf5 (ENSAMXG00000000428) #22	LIN7B (ENSAMXG00000035915) ##23	ppfia2 (ENSAMXG00000006001) #26	llph (ENSAMXG00000030053)	hcls1 (ENSAMXG00000006045)	ENSAMXG00000006063	guca1a (ENSAMXG00000006082)	orc5 (ENSAMXG00000006161)	ENSAMXG00000037520	lhfpl3 (ENSAMXG00000032533)	ENSAMXG00000031350	ENSAMXG00000037828	ndufb2 (ENSAMXG00000006366)	KDM7A (ENSAMXG00000006392)	ENSAMXG00000041110
Electric eel	MODERN SPECIES	309										ENSEEEG00000014336 #12	ENSEEEG00000014337	syt1a (ENSEEEG00000014338) #14	pawr (ENSEEEG00000014348) #16	ppp1r12a (ENSEEEG00000014354) #18	rps16 (ENSEEEG00000014359)	myf6 (ENSEEEG00000014363) #21	myf5 (ENSEEEG00000014364) #22
Cyprinoidei	ANCESTRAL SPECIES	67										ENSGT00510000047886.b.ib	ENSGT00940000158014 #12	ENSGT00940000155394.i.a #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.bb #26	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00940000159379	ENSGT00940000153372.A.f
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	481																ENSGT00950000182959.a.b.b.a.i #21	ENSGT00950000182959.a.a.b #22	ENSGT00940000153222.a.a.z #23	ENSGT00940000157479.i #25	ENSGT01050000244900.a.a.a.a.b.bb.n #26	ENSGT00940000165344.f	ENSGT00940000158997.k.a	ENSGT00730000111007.a.a.j	ENSGT00940000164333.c	ENSGT00390000009380.b	ENSGT00990000203541.a.a.a.a.a.f	ENSGT00990000203541.a.a.a.a.a.e.b	ENSGT00940000157862.j	ENSGT00390000004044.a	ENSGT00940000158039.h.a	ENSGT00940000159379.e
Cyprininae_a	ANCESTRAL SPECIES	174										ENSGT00940000158014.n #12	ENSGT00940000155394.i.a.b #14	ENSGT00390000000406.l #16	ENSGT00940000156120.a.j #18	ENSGT00950000182959.a.b.b.a.j.b #21	ENSGT00950000182959.a.a.a #22	ENSGT00950000182959.a.b.b.a.i #21	ENSGT00950000182959.a.a.b #22	ENSGT00940000153222.a.a.y #23	ENSGT00940000157479.j #25	ENSGT01050000244900.a.a.a.a.b.bb.m.b #26	ENSGT00940000165344.e	ENSGT00940000158997.k.b	ENSGT00730000111007.a.a.i	ENSGT00940000164333.d	ENSGT00390000009380.a	ENSGT00990000203541.a.a.a.a.a.e.a	ENSGT00940000157862.i	ENSGT00390000004044.b	ENSGT00940000158039.h.b	ENSGT00940000159379.f	ENSGT00940000153372.A.f.k
Golden-line barbel	MODERN SPECIES	717												nav3 (ENSSGRG00000014524) #12	syt1a (ENSSGRG00000015011) #14	pawr (ENSSGRG00000015136) #16	rps16 (ENSSGRG00000015151)	myf6 (ENSSGRG00000015176) #21	myf5 (ENSSGRG00000015178) #22	lin7a (ENSSGRG00000015179) #23	ACSS3 (ENSSGRG00000015180) #25
Goldfish	MODERN SPECIES	33	napepld (ENSCARG00000016922)	rassf8b (ENSCARG00000016908) ##35	ints13 (ENSCARG00000016844)	ENSCARG00000016831	ENSCARG00000016819	ENSCARG00000016808	ENSCARG00000016803	ENSCARG00000016796	ENSCARG00000016787	ENSCARG00000016739	nav3 (ENSCARG00000014159) #12	syt1a (ENSCARG00000014000) #14	pawr (ENSCARG00000013984) #16	ppp1r12a (ENSCARG00000013705) #18	rps16 (ENSCARG00000013649)	myf6 (ENSCARG00000013643) #21	myf5 (ENSCARG00000013638) #22	lin7a (ENSCARG00000013634) #23	ENSCARG00000013631	ENSCARG00000013627	ENSCARG00000013625	BRD1 (ENSCARG00000013600)	zbed4 (ENSCARG00000013589)	alg12 (ENSCARG00000013585)	creld2 (ENSCARG00000013490)	ENSCARG00000013472	ENSCARG00000013469	mdm2 (ENSCARG00000013438)	slc35e3 (ENSCARG00000013424)	magi2a (ENSCARG00000010141)	nup107 (ENSCARG00000008124)
Cyprininae	ANCESTRAL SPECIES	94		ENSGT00940000153544.b.f	ENSGT00940000157572.a.a.b	ENSGT00940000155997.lb.a.lb.a	ENSGT00940000158409.ab	ENSGT00940000156127.t	ENSGT00390000017990.a	ENSGT00950000182839.B.a.a.k.a ##35	ENSGT00390000002793.d	ENSGT00510000047886.b.ib.a	ENSGT00940000158014.m #12	ENSGT00940000155394.i.a.a #14	ENSGT00390000000406.k #16	ENSGT00940000156120.a.i #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a.j #21	ENSGT00950000182959.a.a.a #22	ENSGT00940000153222.a.a.y #23	ENSGT00940000157479.j #25	ENSGT01050000244900.a.a.a.a.b.bb.m.b #26	ENSGT00940000165344.e	ENSGT00940000158997.k.b	ENSGT00730000111007.a.a.i	ENSGT00940000164333.d	ENSGT00390000009380.a	ENSGT00990000203541.a.a.a.a.a.e.a	ENSGT00940000157862.i	ENSGT00390000004044.b	ENSGT00940000158039.h.b	ENSGT00940000159379.f	ENSGT00940000153372.A.f.k
Cyprininae_a	DUPLICATION
Cyprininae_a	ANCESTRAL SPECIES	290	ENSGT00390000012875.d	ENSGT00940000153544.b.f	ENSGT00940000157572.a.a.b	ENSGT00940000155997.lb.a.lb.a	ENSGT00940000158409.ab	ENSGT00940000156127.t	ENSGT00390000017990.a	ENSGT00950000182839.B.a.a.k.a ##35	ENSGT00390000002793.d	ENSGT01100000263571.i.a.a.b.b	ENSGT00940000158014.m #12	ENSGT00940000155394.i.a.a #14	ENSGT00390000000406.k #16	ENSGT00940000156120.a.i #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a.j.a #21	ENSGT00940000153222.a.a.z #23	ENSGT00940000157479.i #25	ENSGT01050000244900.a.a.a.a.b.bb.n #26	ENSGT00940000165344.f	ENSGT00940000158997.k.a	ENSGT00730000111007.a.a.j	ENSGT00940000164333.c	ENSGT00390000009380.b	ENSGT00990000203541.a.a.a.a.a.f	ENSGT00990000203541.a.a.a.a.a.e.b	ENSGT00940000157862.j	ENSGT00390000004044.a	ENSGT00940000158039.h.a	ENSGT00940000159379.e	ENSGT00940000153372.A.f.l
Golden-line barbel	MODERN SPECIES	4036																myf6 (ENSSGRG00000004888) #21
Common carp reference	MODERN SPECIES	8	ENSCCRG00000039900	CACNA2D4 (ENSCCRG00000013920)	dcp1b (ENSCCRG00000013880)	cacna1c (ENSCCRG00000021334)	napepld (ENSCCRG00000077775)	ENSCCRG00000003582 ##35	ENSCCRG00000059987	ENSCCRG00000055385	ENSCCRG00000073152	ENSCCRG00000018894	nav3 (ENSCCRG00000004716) #12	syt1a (ENSCCRG00000012658) #14	pawr (ENSCCRG00000074321) #16	ppp1r12a (ENSCCRG00000017869) #18	rps16 (ENSCCRG00000071173)	myf6 (ENSCCRG00000002310) #21	lin7a (ENSCCRG00000002318) #23	ACSS3 (ENSCCRG00000070205) #25	ENSCCRG00000079907	ppfia2 (ENSCCRG00000077057) #26	llph (ENSCCRG00000071942)	hcls1 (ENSCCRG00000071219)	ENSCCRG00000072639	guca1a (ENSCCRG00000059884)	lhfpl3 (ENSCCRG00000060847)	ENSCCRG00000039272	ENSCCRG00000048741	ENSCCRG00000048750	ENSCCRG00000039382	cd36 (ENSCCRG00000035158)	gnai1 (ENSCCRG00000078709)
Cyprininae_a	ANCESTRAL SPECIES	174												ENSGT00940000158014.n #12	ENSGT00940000155394.i.a.b #14	ENSGT00390000000406.l #16	ENSGT00940000156120.a.j #18	ENSGT00950000182959.a.b.b.a.j.b #21	ENSGT00950000182959.a.a.a #22	ENSGT00950000182959.a.b.b.a.i #21	ENSGT00950000182959.a.a.b #22	ENSGT00940000153222.a.a.y #23	ENSGT00940000157479.j #25	ENSGT01050000244900.a.a.a.a.b.bb.m.b #26	ENSGT00940000165344.e	ENSGT00940000158997.k.b	ENSGT00730000111007.a.a.i	ENSGT00940000164333.d	ENSGT00390000009380.a	ENSGT00990000203541.a.a.a.a.a.e.a	ENSGT00940000157862.i	ENSGT00390000004044.b	ENSGT00940000158039.h.b
Common carp reference	MODERN SPECIES	36	dcp1b (ENSCCRG00000016759)	cacna1c (ENSCCRG00000079889)	ENSCCRG00000064902 ##35	ENSCCRG00000076072	ENSCCRG00000024630	ENSCCRG00000025696	ENSCCRG00000038194	ENSCCRG00000003610	ENSCCRG00000082448	ENSCCRG00000075007	nav3 (ENSCCRG00000003878) #12	syt1a (ENSCCRG00000060462) #14	pawr (ENSCCRG00000017856) #16	ppp1r12a (ENSCCRG00000031966) #18	ENSCCRG00000031955	myf6 (ENSCCRG00000052812) #21	myf5 (ENSCCRG00000031947) #22	ENSCCRG00000002290	lin7a (ENSCCRG00000070932) #23	ACSS3 (ENSCCRG00000072702) #25	ppfia2 (ENSCCRG00000070855) #26	llph (ENSCCRG00000057054)	hcls1 (ENSCCRG00000001201)	ENSCCRG00000001214	guca1a (ENSCCRG00000070485)	lhfpl3 (ENSCCRG00000058495)	orc5 (ENSCCRG00000001236)	ENSCCRG00000039177	ndufb2 (ENSCCRG00000072248)	ENSCCRG00000035796	ENSCCRG00000033639
Goldfish	MODERN SPECIES	21	gys2 (ENSCARG00000050460)	kiss2 (ENSCARG00000050789)	ldhba (ENSCARG00000050805)	slc25a3a (ENSCARG00000004095)	tmpoa (ENSCARG00000004118)	strap (ENSCARG00000004172)	ETNK1 (ENSCARG00000004230)	sox5 (ENSCARG00000004446)	dnai7 (ENSCARG00000007038)	lrmp (ENSCARG00000007098)	bcat1 (ENSCARG00000007169)	syt1a (ENSCARG00000007182) #14	pawr (ENSCARG00000007222) #16	ppp1r12a (ENSCARG00000007240) #18	RPS16 (ENSCARG00000007629)	myf6 (ENSCARG00000007640) #21	myf5 (ENSCARG00000007648) #22	lin7a (ENSCARG00000007657) #23	ACSS3 (ENSCARG00000007733) #25	ppfia2 (ENSCARG00000008457) #26	llph (ENSCARG00000011062)	hcls1 (ENSCARG00000011091)	GOLGB1 (ENSCARG00000011371)	guca1a (ENSCARG00000011420)	orc5 (ENSCARG00000011442)	lhfpl3 (ENSCARG00000011623)	ENSCARG00000011636	ndufb2 (ENSCARG00000011648)	KDM7A (ENSCARG00000011660)	SEMA3C (ENSCARG00000011766)	cd36 (ENSCARG00000012095)
Zebrafish	MODERN SPECIES	19	CACNA2D4 (ENSDARG00000026855)	dcp1b (ENSDARG00000045484)	cacna1c (ENSDARG00000008398)	napepld (ENSDARG00000009252)	ints13 (ENSDARG00000011764)	rassf8b (ENSDARG00000045485) ##35	ENSDARG00000055245	ENSDARG00000114678	ENSDARG00000090038	ENSDARG00000090277	nav3 (ENSDARG00000005476) #12	syt1a (ENSDARG00000030614) #14	pawr (ENSDARG00000045486) #16	ppp1r12a (ENSDARG00000010784) #18	rps16 (ENSDARG00000045487)	myf6 (ENSDARG00000029830) #21	myf5 (ENSDARG00000007277) #22	lin7a (ENSDARG00000013414) #23	ACSS3 (ENSDARG00000032218) #25	ppfia2 (ENSDARG00000013000) #26	llph (ENSDARG00000055360)	hcls1 (ENSDARG00000012729)	ENSDARG00000061951	guca1a (ENSDARG00000010454)	orc5 (ENSDARG00000021579)	lhfpl3 (ENSDARG00000021595)	KMT2E (ENSDARG00000007523)	ndufb2 (ENSDARG00000045490)	kdm7aa (ENSDARG00000018111)	SEMA3C (ENSDARG00000034300)	cd36 (ENSDARG00000032639)
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	251	ENSGT00390000010830	ENSGT00390000018775	ENSGT00940000165334	ENSGT00440000039564.b.a	ENSGT00940000153362.a.d	ENSGT00940000156622.a #7	ENSGT00530000063074.b.b.c #9	ENSGT00940000154980.db #10	ENSGT00940000157713.b #11	ENSGT00940000158014.a.b #12	ENSGT00390000000406.n #16	ENSGT00940000156120.a.a #18	ENSGT00390000013067.l	ENSGT00940000160698 #19	ENSGT00940000167492.i	ENSGT00950000182959.a.b.b.a.k #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.`b #26
P. kingsleyae	MODERN SPECIES	330									ENSPKIG00000003485 #12	syt1a (ENSPKIG00000003538) #14	PAWR (ENSPKIG00000003600) #16	ppp1r12a (ENSPKIG00000003762) #18	rps16 (ENSPKIG00000004000)	OTOGL (ENSPKIG00000004061) #19	ENSPKIG00000004182	myf6 (ENSPKIG00000004248) #21	myf5 (ENSPKIG00000004272) #22	lin7a (ENSPKIG00000004317) #23	ACSS3 (ENSPKIG00000004377) #25	ppfia2 (ENSPKIG00000004590) #26
Asian bonytongue	MODERN SPECIES	16	cmah (ENSSFOG00015018402)	krr1 (ENSSFOG00015031941)	phlda1 (ENSSFOG00015033220)	nap1l1 (ENSSFOG00015018510)	OSBPL8 (ENSSFOG00015018553) #7	zdhhc17 (ENSSFOG00015018700) #9	csrp2 (ENSSFOG00015018779) #10	nav3 (ENSSFOG00015018832) #12	ENSSFOG00015018791	syt1a (ENSSFOG00015031929) #14	PAWR (ENSSFOG00015019109) #16	ppp1r12a (ENSSFOG00015019159) #18	rps16 (ENSSFOG00015019382)	OTOGL (ENSSFOG00015019419) #19	ENSSFOG00015019468	myf6 (ENSSFOG00015019606) #21	myf5 (ENSSFOG00015019621) #22	lin7a (ENSSFOG00015019629) #23	ACSS3 (ENSSFOG00015019639) #25	ppfia2 (ENSSFOG00015019713) #26	TMTC2 (ENSSFOG00015019839) #29	ENSSFOG00015029516	IQSEC3 (ENSSFOG00015019895)	ENSSFOG00015019921	ddx11 (ENSSFOG00015019931)	fkbp4 (ENSSFOG00015019964)	ENSSFOG00015019985	ENSSFOG00015020008	ENSSFOG00015020016	tnni1c (ENSSFOG00015020045)	c2cd5 (ENSSFOG00015020202)
Osteoglossiformes	ANCESTRAL SPECIES																	ENSGT00950000182959.a.b.b.a.l #21
P. kingsleyae	MODERN SPECIES	123	nap1l1 (ENSPKIG00000002599)	BBS10 (ENSPKIG00000002580)	OSBPL8 (ENSPKIG00000002490) #7	zdhhc17 (ENSPKIG00000002371) #9	csrp2 (ENSPKIG00000002306) #10	e2f7 (ENSPKIG00000002278) #11	ENSPKIG00000002256	nav3 (ENSPKIG00000002193) #12	syt1a (ENSPKIG00000002150) #14	pawr (ENSPKIG00000002134) #16	ENSPKIG00000002120	ppp1r12a (ENSPKIG00000002012) #18	rps16 (ENSPKIG00000001864)	ENSPKIG00000001847	ENSPKIG00000001785	MYF6 (ENSPKIG00000001745) #21	lin7a (ENSPKIG00000001713) #23	ppfia2 (ENSPKIG00000001660) #26
Reedfish	MODERN SPECIES		arfgap3 (ENSECRG00000009110)	pacsin2 (ENSECRG00000009143)	ttll1 (ENSECRG00000009159)	mcat (ENSECRG00000009176)	ENSECRG00000009184	nav3 (ENSECRG00000009243) #12	syt1a (ENSECRG00000009372) #14	pawr (ENSECRG00000009402) #16	ENSECRG00000009415	ENSECRG00000009427 #18	ENSECRG00000009442	rps16 (ENSECRG00000009451)	OTOGL (ENSECRG00000009486) #19	ENSECRG00000009546	PTPRQ (ENSECRG00000009623) #20	myf6 (ENSECRG00000009908) #21	ENSECRG00000009918 ##22	lin7a (ENSECRG00000009937) #23	ACSS3 (ENSECRG00000009948) #25	ppfia2 (ENSECRG00000010095) #26	ccdc59 (ENSECRG00000010497) #27	mettl25 (ENSECRG00000010503) #28	ENSECRG00000010511	tmtc2a (ENSECRG00000010528) #29	SLC6A15 (ENSECRG00000010556) #32	alx1 (ENSECRG00000010569) #34	RASSF9 (ENSECRG00000010575) #35	NTS (ENSECRG00000010584) #36	ENSECRG00000010592	zgc:103499 (ENSECRG00000010598)	ENSECRG00000010606
Sarcopterygii	ANCESTRAL SPECIES	8	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00660000096975	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00500000044938	ENSGT00730000111039.C	ENSGT00940000157538
Coelacanth	MODERN SPECIES	512													ENSLACG00000000110	ENSLACG00000006049	PTPRQ (ENSLACG00000008359) #20	MYF6 (ENSLACG00000010731) #21	LIN7A (ENSLACG00000011681) #23	ACSS3 (ENSLACG00000012601) #25	ppfia2 (ENSLACG00000013750) #26	ENSLACG00000014963	ENSLACG00000016017 #26	ENSLACG00000016219	CCDC59 (ENSLACG00000016632) #27	METTL25 (ENSLACG00000016693) #28
Tetrapoda	ANCESTRAL SPECIES	5	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00660000096975	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000167105	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36
Anura	ANCESTRAL SPECIES		ENSGT00940000157129	ENSGT00940000155834	ENSGT00940000162446	ENSGT00940000164439	ENSGT00940000154098.a	ENSGT00730000111360	ENSGT00390000008708	ENSGT00940000157255	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00660000096975	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000167105	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Frog	MODERN SPECIES	3	ENSXETG00000049231	c12orf63 (ENSXETG00000045266)	nedd1 (ENSXETG00000021683)	ENSXETG00000034921	ENSXETG00000032908	tmpo (ENSXETG00000018759)	slc25a3 (ENSXETG00000018767)	ENSXETG00000045338	nuak1 (ENSXETG00000018772)	avpr1a (ENSXETG00000018781)	ppm1h (ENSXETG00000018793)	ptpn3 (ENSXETG00000018796)	rps16 (ENSXETG00000018809)	OTOGL (ENSXETG00000014502) #19	PTPRQ (ENSXETG00000030349) #20	myf6 (ENSXETG00000027340) #21	myf5 (ENSXETG00000014520) #22	lin7a (ENSXETG00000014525) #23	acss3 (ENSXETG00000014528) #25	ppfia2 (ENSXETG00000014532) #26	ccdc59 (ENSXETG00000014539) #27	mettl25 (ENSXETG00000014540) #28	ENSXETG00000047662	tmtc2 (ENSXETG00000021370) #29	ENSXETG00000042111	slc6a15 (ENSXETG00000021372) #32	lrriq1 (ENSXETG00000037765) #33	alx1 (ENSXETG00000021397) #34	rassf9 (ENSXETG00000011745) #35	nts (ENSXETG00000040562) #36	mgat4c (ENSXETG00000011744) #37
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000014201	ENSLLEG00000016337	ENSLLEG00000016597	ENSLLEG00000016633	ENSLLEG00000016847	NUAK1 (ENSLLEG00000017219)	AVPR1A (ENSLLEG00000017308)	PPM1H (ENSLLEG00000017365)	ENSLLEG00000017515	MON2 (ENSLLEG00000017568)	ENSLLEG00000018351	ENSLLEG00000018379	OTOGL (ENSLLEG00000018482) #19	ENSLLEG00000019169	PTPRQ (ENSLLEG00000019234) #20	MYF6 (ENSLLEG00000020820) #21	MYF5 (ENSLLEG00000020856) #22	LIN7A (ENSLLEG00000020908) #23	ENSLLEG00000021060	ACSS3 (ENSLLEG00000021119) #25	ENSLLEG00000021608	PPFIA2 (ENSLLEG00000021708) #26	ENSLLEG00000023610	CCDC59 (ENSLLEG00000023716) #27	METTL25 (ENSLLEG00000023763) #28	ENSLLEG00000024005	TMTC2 (ENSLLEG00000024034) #29	SLC6A15 (ENSLLEG00000024199) #32	ENSLLEG00000024506	ENSLLEG00000024610 #33	ENSLLEG00000025376
Amniota	ANCESTRAL SPECIES	5	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Mammalia	ANCESTRAL SPECIES	8	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Platypus	MODERN SPECIES	5	ENSOANG00000012140	KRR1 (ENSOANG00000014451)	ENSOANG00000047378	ENSOANG00000004688	ENSOANG00000037830	OSBPL8 (ENSOANG00000011301) #7	ZDHHC17 (ENSOANG00000047613) #9	CSRP2 (ENSOANG00000007447) #10	E2F7 (ENSOANG00000007450) #11	NAV3 (ENSOANG00000007451) #12	SYT1 (ENSOANG00000007531) #14	PAWR (ENSOANG00000043356) #16	PPP1R12A (ENSOANG00000001685) #18	OTOGL (ENSOANG00000004859) #19	PTPRQ (ENSOANG00000004855) #20	MYF6 (ENSOANG00000004854) #21	MYF5 (ENSOANG00000004853) #22	ENSOANG00000041857 #23	ACSS3 (ENSOANG00000004851) #25	PPFIA2 (ENSOANG00000004850) #26	ENSOANG00000042867 #27	ENSOANG00000004849 #28	TMTC2 (ENSOANG00000015210) #29	SLC6A15 (ENSOANG00000006324) #32	ENSOANG00000050599	ENSOANG00000006648 #33	ALX1 (ENSOANG00000006647) #34	RASSF9 (ENSOANG00000006646) #35	NTS (ENSOANG00000006645) #36	MGAT4C (ENSOANG00000006644) #37	C12orf29 (ENSOANG00000006642)
Theria	ANCESTRAL SPECIES	2	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Marsupialia	ANCESTRAL SPECIES	11	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.k	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Opossum	MODERN SPECIES	7	KRR1 (ENSMODG00000020451)	ENSMODG00000044376	ENSMODG00000020456	ENSMODG00000020458	OSBPL8 (ENSMODG00000020459) #7	ENSMODG00000048422 #9	ENSMODG00000020464 #10	E2F7 (ENSMODG00000020465) #11	NAV3 (ENSMODG00000020466) #12	SYT1 (ENSMODG00000020467) #14	PAWR (ENSMODG00000020468) #16	PPP1R12A (ENSMODG00000020471) #18	ENSMODG00000025012	OTOGL (ENSMODG00000020473) #19	PTPRQ (ENSMODG00000020476) #20	MYF6 (ENSMODG00000039074) #21	MYF5 (ENSMODG00000020478) #22	LIN7A (ENSMODG00000020479) #23	ENSMODG00000037278	ACSS3 (ENSMODG00000020480) #25	ENSMODG00000020481 #26	ENSMODG00000020484 #27	METTL25 (ENSMODG00000020485) #28	TMTC2 (ENSMODG00000020487) #29	ENSMODG00000020488	SLC6A15 (ENSMODG00000020492) #32	ALX1 (ENSMODG00000020494) #34	ENSMODG00000041685	RASSF9 (ENSMODG00000020496) #35	NTS (ENSMODG00000020497) #36	MGAT4C (ENSMODG00000047285) #37
Marsupialia_b	ANCESTRAL SPECIES	13	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.k	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Diprotodontia	ANCESTRAL SPECIES	8	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.k	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Diprotodontia_a	ANCESTRAL SPECIES	8	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.k	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Common wonbat	MODERN SPECIES	1095	OSBPL8 (ENSVURG00010002089) #7	ZDHHC17 (ENSVURG00010002037) #9	CSRP2 (ENSVURG00010002008) #10	E2F7 (ENSVURG00010001992) #11	ENSVURG00010001969	ENSVURG00010001942	ENSVURG00010001934	NAV3 (ENSVURG00010001745) #12	ENSVURG00010001638	ENSVURG00010001581	SYT1 (ENSVURG00010001565) #14	PAWR (ENSVURG00010001479) #16	PPP1R12A (ENSVURG00010001421) #18	OTOGL (ENSVURG00010001281) #19	PTPRQ (ENSVURG00010001162) #20	MYF6 (ENSVURG00010001122) #21	MYF5 (ENSVURG00010001088) #22	LIN7A (ENSVURG00010001078) #23	ACSS3 (ENSVURG00010000986) #25	PPFIA2 (ENSVURG00010000931) #26	CCDC59 (ENSVURG00010000865) #27	METTL25 (ENSVURG00010000829) #28	TMTC2 (ENSVURG00010000692) #29	ENSVURG00010000644	ENSVURG00010000614	ENSVURG00010000610	SLC6A15 (ENSVURG00010000556) #32	ENSVURG00010000506	ALX1 (ENSVURG00010000474) #34	RASSF9 (ENSVURG00010000436) #35	NTS (ENSVURG00010015898) #36
koala	MODERN SPECIES	51						ZDHHC17 (ENSPCIG00000005890) #9	CSRP2 (ENSPCIG00000005894) #10	E2F7 (ENSPCIG00000025823) #11	NAV3 (ENSPCIG00000025666) #12	ENSPCIG00000026362	SYT1 (ENSPCIG00000032719) #14	PAWR (ENSPCIG00000026365) #16	PPP1R12A (ENSPCIG00000026366) #18	OTOGL (ENSPCIG00000026368) #19	PTPRQ (ENSPCIG00000029148) #20	MYF6 (ENSPCIG00000029149) #21	MYF5 (ENSPCIG00000029150) #22	LIN7A (ENSPCIG00000029151) #23	ACSS3 (ENSPCIG00000035215) #25	PPFIA2 (ENSPCIG00000024777) #26	CCDC59 (ENSPCIG00000007808) #27	METTL25 (ENSPCIG00000007809) #28	TMTC2 (ENSPCIG00000032378) #29	ENSPCIG00000011311	SLC6A15 (ENSPCIG00000027156) #32	ENSPCIG00000009153	ALX1 (ENSPCIG00000021266) #34	RASSF9 (ENSPCIG00000002684) #35	NTS (ENSPCIG00000009584) #36	MGAT4C (ENSPCIG00000034460) #37	C12orf50 (ENSPCIG00000000703)
Wallaby	MODERN SPECIES	1972																MYF6 (ENSMEUG00000010618) #21	MYF5 (ENSMEUG00000010628) #22
Tasmanian devil	MODERN SPECIES	4	ENSSHAG00000000387	KRR1 (ENSSHAG00000001646)	ENSSHAG00000031318	NAP1L1 (ENSSHAG00000002304)	BBS10 (ENSSHAG00000001800)	OSBPL8 (ENSSHAG00000023268) #7	ZDHHC17 (ENSSHAG00000022371) #9	CSRP2 (ENSSHAG00000005571) #10	E2F7 (ENSSHAG00000002919) #11	NAV3 (ENSSHAG00000001971) #12	SYT1 (ENSSHAG00000009436) #14	ENSSHAG00000022708 #16	PPP1R12A (ENSSHAG00000005280) #18	OTOGL (ENSSHAG00000010191) #19	PTPRQ (ENSSHAG00000022062) #20	MYF6 (ENSSHAG00000013331) #21	MYF5 (ENSSHAG00000013391) #22	LIN7A (ENSSHAG00000029974) #23	ENSSHAG00000025569	ACSS3 (ENSSHAG00000005298) #25	PPFIA2 (ENSSHAG00000007734) #26	ENSSHAG00000032226	CCDC59 (ENSSHAG00000031706) #27	METTL25 (ENSSHAG00000007147) #28	ENSSHAG00000030042	TMTC2 (ENSSHAG00000031167) #29	SLC6A15 (ENSSHAG00000003371) #32	ENSSHAG00000031034	ALX1 (ENSSHAG00000010658) #34	RASSF9 (ENSSHAG00000006974) #35	NTS (ENSSHAG00000007922) #36
Eutheria	ANCESTRAL SPECIES	1	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Atlantogenata	ANCESTRAL SPECIES	16	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Afrotheria	ANCESTRAL SPECIES	8	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Afrotheria_a	ANCESTRAL SPECIES	8	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Elephant	MODERN SPECIES	196	KRR1 (ENSLAFG00000015986)	ENSLAFG00000008030	NAP1L1 (ENSLAFG00000005711)	BBS10 (ENSLAFG00000009397)	OSBPL8 (ENSLAFG00000009398) #7	ZDHHC17 (ENSLAFG00000006732) #9	CSRP2 (ENSLAFG00000006735) #10	ENSLAFG00000028909	E2F7 (ENSLAFG00000017902) #11	NAV3 (ENSLAFG00000001793) #12	SYT1 (ENSLAFG00000013359) #14	ENSLAFG00000007186 #16	PPP1R12A (ENSLAFG00000014619) #18	ENSLAFG00000016020 #19	PTPRQ (ENSLAFG00000009382) #20	MYF6 (ENSLAFG00000016476) #21	MYF5 (ENSLAFG00000016473) #22	LIN7A (ENSLAFG00000014801) #23	ACSS3 (ENSLAFG00000011051) #25	PPFIA2 (ENSLAFG00000011055) #26	CCDC59 (ENSLAFG00000015368) #27	METTL25 (ENSLAFG00000015370) #28	TMTC2 (ENSLAFG00000018670) #29	ENSLAFG00000029547	SLC6A15 (ENSLAFG00000006073) #32	ENSLAFG00000020855	ALX1 (ENSLAFG00000013544) #34	RASSF9 (ENSLAFG00000028247) #35	NTS (ENSLAFG00000005894) #36	MGAT4C (ENSLAFG00000007280) #37	C12orf50 (ENSLAFG00000005231)
Hyrax	MODERN SPECIES	969																MYF6 (ENSPCAG00000001692) #21	MYF5 (ENSPCAG00000001722) #22
Tenrec	MODERN SPECIES	16487																ENSETEG00000011256 #21	MYF5 (ENSETEG00000011255) #22
Xenarthra	ANCESTRAL SPECIES	724														ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26
Armadillo	MODERN SPECIES	1911														OTOGL (ENSDNOG00000036627) #19	PTPRQ (ENSDNOG00000031827) #20	MYF6 (ENSDNOG00000019387) #21	MYF5 (ENSDNOG00000034747) #22	LIN7A (ENSDNOG00000024299) #23	ACSS3 (ENSDNOG00000015337) #25	PPFIA2 (ENSDNOG00000015350) #26
Boreoeutheria	ANCESTRAL SPECIES	6	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Laurasiatheria	ANCESTRAL SPECIES	6	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Eulipotyphla	ANCESTRAL SPECIES	1068																ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22
Common shrew	MODERN SPECIES	12722																MYF6 (ENSSARG00000008211) #21	MYF5 (ENSSARG00000008217) #22
Laurasiatheria_a	ANCESTRAL SPECIES	6	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Artiodactyla	ANCESTRAL SPECIES	6	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Suina	ANCESTRAL SPECIES	4	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Chacoan peccary	MODERN SPECIES	871	KRR1 (ENSCWAG00000005721)	ENSCWAG00000005880	PHLDA1 (ENSCWAG00000005900)	NAP1L1 (ENSCWAG00000005937)	BBS10 (ENSCWAG00000006105)	OSBPL8 (ENSCWAG00000006143) #7	ZDHHC17 (ENSCWAG00000006304) #9	CSRP2 (ENSCWAG00000006361) #10	E2F7 (ENSCWAG00000006403) #11	NAV3 (ENSCWAG00000006671) #12	SYT1 (ENSCWAG00000007382) #14	PAWR (ENSCWAG00000007454) #16	PPP1R12A (ENSCWAG00000007564) #18	OTOGL (ENSCWAG00000007720) #19	PTPRQ (ENSCWAG00000009402) #20	MYF6 (ENSCWAG00000010168) #21	MYF5 (ENSCWAG00000010199) #22	LIN7A (ENSCWAG00000010238) #23	ACSS3 (ENSCWAG00000010300) #25	PPFIA2 (ENSCWAG00000010523) #26	CCDC59 (ENSCWAG00000013098) #27	METTL25 (ENSCWAG00000013127) #28	TMTC2 (ENSCWAG00000013168) #29
Pig	MODERN SPECIES	13		ENSSSCG00000025041	ZDHHC17 (ENSSSCG00000000952) #9	CSRP2 (ENSSSCG00000000951) #10	ENSSSCG00000043521	E2F7 (ENSSSCG00000000950) #11	ENSSSCG00000044299	NAV3 (ENSSSCG00000029249) #12	ENSSSCG00000052129	ENSSSCG00000049637	SYT1 (ENSSSCG00000000948) #14	PAWR (ENSSSCG00000036560) #16	PPP1R12A (ENSSSCG00000038973) #18	OTOGL (ENSSSCG00000000943) #19	PTPRQ (ENSSSCG00000031716) #20	MYF6 (ENSSSCG00000026533) #21	MYF5 (ENSSSCG00000000937) #22	ENSSSCG00000042719	LIN7A (ENSSSCG00000040348) #23	ACSS3 (ENSSSCG00000000939) #25	PPFIA2 (ENSSSCG00000000940) #26	CCDC59 (ENSSSCG00000038987) #27	METTL25 (ENSSSCG00000000941) #28	TMTC2 (ENSSSCG00000024065) #29	ENSSSCG00000042278	SLC6A15 (ENSSSCG00000000936) #32	TSPAN19 (ENSSSCG00000040399)	LRRIQ1 (ENSSSCG00000000934)	ALX1 (ENSSSCG00000036744) #34	RASSF9 (ENSSSCG00000034948) #35	NTS (ENSSSCG00000000932) #36
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Camelidae	ANCESTRAL SPECIES	39	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Alpaca	MODERN SPECIES	1669														ENSVPAG00000001924	ENSVPAG00000001925 #20	MYF6 (ENSVPAG00000001926) #21	MYF5 (ENSVPAG00000001927) #22	LIN7A (ENSVPAG00000001928) #23	ACSS3 (ENSVPAG00000001929) #25	PPFIA2 (ENSVPAG00000001930) #26	CCDC59 (ENSVPAG00000001931) #27	METTL25 (ENSVPAG00000001932) #28
Arabian camel	MODERN SPECIES	3	ENSCDRG00005017128	ENSCDRG00005017029	PHLDA1 (ENSCDRG00005016995)	NAP1L1 (ENSCDRG00005016698)	BBS10 (ENSCDRG00005016659)	OSBPL8 (ENSCDRG00005016392) #7	ZDHHC17 (ENSCDRG00005016120) #9	CSRP2 (ENSCDRG00005016043) #10	E2F7 (ENSCDRG00005015968) #11	NAV3 (ENSCDRG00005014880) #12	SYT1 (ENSCDRG00005014660) #14	PAWR (ENSCDRG00005014596) #16	PPP1R12A (ENSCDRG00005012542) #18	OTOGL (ENSCDRG00005010509) #19	PTPRQ (ENSCDRG00005009356) #20	MYF6 (ENSCDRG00005009281) #21	MYF5 (ENSCDRG00005009235) #22	LIN7A (ENSCDRG00005009181) #23	ACSS3 (ENSCDRG00005008842) #25	PPFIA2 (ENSCDRG00005005786) #26	CCDC59 (ENSCDRG00005005635) #27	METTL25 (ENSCDRG00005005578) #28	TMTC2 (ENSCDRG00005005499) #29	SLC6A15 (ENSCDRG00005005426) #32	TSPAN19 (ENSCDRG00005005374)	LRRIQ1 (ENSCDRG00005005175)	ALX1 (ENSCDRG00005005138) #34	RASSF9 (ENSCDRG00005005130) #35	NTS (ENSCDRG00005005109) #36	MGAT4C (ENSCDRG00005005093) #37	C12orf50 (ENSCDRG00005021566)
Artiodactyla_b	ANCESTRAL SPECIES	5	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Cetacea	ANCESTRAL SPECIES	8	ENSGT00390000014572.eb.b	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000154172.ab.b	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Odontoceti	ANCESTRAL SPECIES	7	ENSGT00390000014572.eb.b	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000154172.ab.b	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Odontoceti_a	ANCESTRAL SPECIES	6	ENSGT00390000014572.eb.b	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000154172.ab.b	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00390000014572.eb.b	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000154172.ab.b	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00390000004735.A.n	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.bb.a #10	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000154172.ab.b	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00390000004735.A.n	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Beluga whale	MODERN SPECIES	39	BBS10 (ENSDLEG00000007426)	OSBPL8 (ENSDLEG00000007401) #7	ENSDLEG00000007371	ZDHHC17 (ENSDLEG00000007362) #9	CSRP2 (ENSDLEG00000007353) #10	ENSDLEG00000007329 #11	ENSDLEG00000007322 #11	NAV3 (ENSDLEG00000006608) #12	SYT1 (ENSDLEG00000006456) #14	ENSDLEG00000006452	PAWR (ENSDLEG00000006445) #16	ENSDLEG00000006442	PPP1R12A (ENSDLEG00000006433) #18	OTOGL (ENSDLEG00000006234) #19	PTPRQ (ENSDLEG00000006066) #20	MYF6 (ENSDLEG00000006023) #21	MYF5 (ENSDLEG00000006018) #22	LIN7A (ENSDLEG00000005973) #23	ACSS3 (ENSDLEG00000005911) #25	PPFIA2 (ENSDLEG00000005438) #26
Narwhal	MODERN SPECIES	313	NAP1L1 (ENSMMNG00015016626)	BBS10 (ENSMMNG00015017120)	OSBPL8 (ENSMMNG00015017163) #7	ZDHHC17 (ENSMMNG00015017285) #9	ENSMMNG00015017474	CSRP2 (ENSMMNG00015017494) #10	E2F7 (ENSMMNG00015017553) #11	NAV3 (ENSMMNG00015017728) #12	SYT1 (ENSMMNG00015017994) #14	PAWR (ENSMMNG00015018035) #16	ENSMMNG00015018085	PPP1R12A (ENSMMNG00015018194) #18	ENSMMNG00015018420	OTOGL (ENSMMNG00015018567) #19	PTPRQ (ENSMMNG00015019359) #20	MYF6 (ENSMMNG00015019715) #21	MYF5 (ENSMMNG00015019736) #22	LIN7A (ENSMMNG00015019774) #23	ENSMMNG00015019830	ACSS3 (ENSMMNG00015019853) #25	PPFIA2 (ENSMMNG00015020218) #26	CCDC59 (ENSMMNG00015020720) #27	METTL25 (ENSMMNG00015020747) #28	TMTC2 (ENSMMNG00015020798) #29	FAM50A (ENSMMNG00015020820)	SLC6A15 (ENSMMNG00015020847) #32	TSPAN19 (ENSMMNG00015020883)	LRRIQ1 (ENSMMNG00015020965)	ALX1 (ENSMMNG00015020997) #34	RASSF9 (ENSMMNG00015021023) #35	NTS (ENSMMNG00015021038) #36
Vaquita	MODERN SPECIES	1	BBS10 (ENSPSNG00000011255)	OSBPL8 (ENSPSNG00000010975) #7	ENSPSNG00000010941	ENSPSNG00000010920	ZDHHC17 (ENSPSNG00000010872) #9	CSRP2 (ENSPSNG00000010823) #10	E2F7 (ENSPSNG00000010547) #11	NAV3 (ENSPSNG00000009074) #12	ENSPSNG00000008562	SYT1 (ENSPSNG00000008513) #14	PAWR (ENSPSNG00000008439) #16	ENSPSNG00000008403	PPP1R12A (ENSPSNG00000008207) #18	OTOGL (ENSPSNG00000007188) #19	PTPRQ (ENSPSNG00000006652) #20	MYF6 (ENSPSNG00000006531) #21	MYF5 (ENSPSNG00000006510) #22	LIN7A (ENSPSNG00000006484) #23	ACSS3 (ENSPSNG00000006403) #25	PPFIA2 (ENSPSNG00000005685) #26	ENSPSNG00000005450 #27	METTL25 (ENSPSNG00000005420) #28	FAM50A (ENSPSNG00000005402)	TMTC2 (ENSPSNG00000005299) #29	ENSPSNG00000005260	SLC6A15 (ENSPSNG00000005229) #32	TSPAN19 (ENSPSNG00000005188)	LRRIQ1 (ENSPSNG00000005070)	ALX1 (ENSPSNG00000005010) #34	RASSF9 (ENSPSNG00000004990) #35	NTS (ENSPSNG00000004962) #36
Dolphin	MODERN SPECIES	622															ENSTTRG00000014683 #20	MYF6 (ENSTTRG00000014689) #21	MYF5 (ENSTTRG00000014691) #22	LIN7A (ENSTTRG00000014693) #23	ACSS3 (ENSTTRG00000014696) #25	PPFIA2 (ENSTTRG00000014699) #26
Sperm whale	MODERN SPECIES	17	NAP1L1 (ENSPCTG00005009406)	ENSPCTG00005009623	ENSPCTG00005009647	BBS10 (ENSPCTG00005009666)	OSBPL8 (ENSPCTG00005009709) #7	ZDHHC17 (ENSPCTG00005009874) #9	CSRP2 (ENSPCTG00005009938) #10	E2F7 (ENSPCTG00005009995) #11	NAV3 (ENSPCTG00005010415) #12	SYT1 (ENSPCTG00005012311) #14	PAWR (ENSPCTG00005012474) #16	PPP1R12A (ENSPCTG00005012575) #18	ENSPCTG00005012953	OTOGL (ENSPCTG00005013033) #19	PTPRQ (ENSPCTG00005015293) #20	MYF6 (ENSPCTG00005016374) #21	MYF5 (ENSPCTG00005016429) #22	LIN7A (ENSPCTG00005016469) #23	ACSS3 (ENSPCTG00005016578) #25	PPFIA2 (ENSPCTG00005017124) #26	CCDC59 (ENSPCTG00005020122) #27	METTL25 (ENSPCTG00005020146) #28	ENSPCTG00005020220	TMTC2 (ENSPCTG00005020242) #29	SLC6A15 (ENSPCTG00005020350) #32	TSPAN19 (ENSPCTG00005020436)	LRRIQ1 (ENSPCTG00005020500)	ALX1 (ENSPCTG00005020630) #34	RASSF9 (ENSPCTG00005020645) #35	NTS (ENSPCTG00005020672) #36	MGAT4C (ENSPCTG00005020711) #37
Blue whale	MODERN SPECIES	1	PHLDA1 (ENSBMSG00010020734)	NAP1L1 (ENSBMSG00010020766)	BBS10 (ENSBMSG00010020864)	OSBPL8 (ENSBMSG00010020883) #7	ZDHHC17 (ENSBMSG00010020913) #9	CSRP2 (ENSBMSG00010020929) #10	E2F7 (ENSBMSG00010020948) #11	NAV3 (ENSBMSG00010021020) #12	ENSBMSG00010021165	SYT1 (ENSBMSG00010021177) #14	PAWR (ENSBMSG00010021183) #16	PPP1R12A (ENSBMSG00010021198) #18	ENSBMSG00010021208	OTOGL (ENSBMSG00010021255) #19	PTPRQ (ENSBMSG00010007468) #20	MYF6 (ENSBMSG00010007564) #21	MYF5 (ENSBMSG00010007571) #22	LIN7A (ENSBMSG00010007592) #23	ENSBMSG00010007609	ACSS3 (ENSBMSG00010007621) #25	PPFIA2 (ENSBMSG00010007808) #26	CCDC59 (ENSBMSG00010008631) #27	METTL25 (ENSBMSG00010008637) #28	ENSBMSG00010008650	TMTC2 (ENSBMSG00010008658) #29	ENSBMSG00010008664	SLC6A15 (ENSBMSG00010008679) #32	TSPAN19 (ENSBMSG00010008692)	LRRIQ1 (ENSBMSG00010008720)	ALX1 (ENSBMSG00010008770) #34	ENSBMSG00010008780
Pecora	ANCESTRAL SPECIES	3	ENSGT00440000039564.b	ENSGT00940000153362.a.cb	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Yarkand deer	MODERN SPECIES	22	ENSCHYG00000008327	OSBPL8 (ENSCHYG00000008637) #7	ZDHHC17 (ENSCHYG00000009052) #9	CSRP2 (ENSCHYG00000009422) #10	ENSCHYG00000009520	E2F7 (ENSCHYG00000009596) #11	ENSCHYG00000009932	NAV3 (ENSCHYG00000010069) #12	ENSCHYG00000011512	SYT1 (ENSCHYG00000011518) #14	PAWR (ENSCHYG00000011616) #16	ENSCHYG00000011841	PPP1R12A (ENSCHYG00000011940) #18	OTOGL (ENSCHYG00000013254) #19	PTPRQ (ENSCHYG00000015685) #20	MYF6 (ENSCHYG00000017934) #21	MYF5 (ENSCHYG00000018006) #22	LIN7A (ENSCHYG00000018063) #23	ACSS3 (ENSCHYG00000018161) #25	PPFIA2 (ENSCHYG00000018601) #26	ENSCHYG00000021532	CCDC59 (ENSCHYG00000021567) #27	METTL25 (ENSCHYG00000021623) #28	TMTC2 (ENSCHYG00000021769) #29	SLC6A15 (ENSCHYG00000021957) #32	TSPAN19 (ENSCHYG00000022031)	LRRIQ1 (ENSCHYG00000022133)	ALX1 (ENSCHYG00000022696) #34	RASSF9 (ENSCHYG00000022760) #35	NTS (ENSCHYG00000022786) #36	MGAT4C (ENSCHYG00000022826) #37
Percora_a	ANCESTRAL SPECIES	3	ENSGT00440000039564.b	ENSGT00940000153362.a.cb	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Siberian musk deer	MODERN SPECIES	162										NAV3 (ENSMMSG00000008114) #12	SYT1 (ENSMMSG00000009031) #14	PAWR (ENSMMSG00000009120) #16	PPP1R12A (ENSMMSG00000009175) #18	OTOGL (ENSMMSG00000009620) #19	PTPRQ (ENSMMSG00000010710) #20	MYF6 (ENSMMSG00000011253) #21	MYF5 (ENSMMSG00000011275) #22	LIN7A (ENSMMSG00000011300) #23	ACSS3 (ENSMMSG00000011333) #25	ENSMMSG00000011493	PPFIA2 (ENSMMSG00000011641) #26	CCDC59 (ENSMMSG00000013247) #27	METTL25 (ENSMMSG00000013268) #28	TMTC2 (ENSMMSG00000013292) #29	SLC6A15 (ENSMMSG00000013333) #32	TSPAN19 (ENSMMSG00000013408)	LRRIQ1 (ENSMMSG00000013457)	ALX1 (ENSMMSG00000013694) #34	RASSF9 (ENSMMSG00000013706) #35	NTS (ENSMMSG00000013716) #36	MGAT4C (ENSMMSG00000013742) #37
Bovidae	ANCESTRAL SPECIES	3	ENSGT00940000153362.a.cb.b	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00390000012446.o.b	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000013187.b	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Caprinae	DUPLICATION
Caprinae	ANCESTRAL SPECIES																	ENSGT00950000182959.a.b.b.a.m #21
Rambouillet Sheep	MODERN SPECIES	19	GLIPR1 (ENSOARG00020002870)	KRR1 (ENSOARG00020002893)	PHLDA1 (ENSOARG00020002913)	ENSOARG00020002933	OSBPL8 (ENSOARG00020003030) #7	BBS10 (ENSOARG00020003354)	ENSOARG00020003381	ZDHHC17 (ENSOARG00020003403) #9	CSRP2 (ENSOARG00020003468) #10	E2F7 (ENSOARG00020003529) #11	NAV3 (ENSOARG00020003813) #12	SYT1 (ENSOARG00020005626) #14	PAWR (ENSOARG00020005665) #16	PPP1R12A (ENSOARG00020005817) #18	PTPRQ (ENSOARG00020008080) #20	MYF6 (ENSOARG00020008943) #21	MYF6 (ENSOARG00020008989) #21	MYF5 (ENSOARG00020009026) #22	LIN7A (ENSOARG00020009053) #23	ACSS3 (ENSOARG00020009124) #25	PPFIA2 (ENSOARG00020009934) #26	CCDC59 (ENSOARG00020015621) #27	TMTC2 (ENSOARG00020015711) #29	SLC6A15 (ENSOARG00020007201) #32	TSPAN19 (ENSOARG00020007275)	ALX1 (ENSOARG00020007379) #34	RASSF9 (ENSOARG00020007430) #35	NTS (ENSOARG00020007471) #36	ENSOARG00020007547	MGAT4C (ENSOARG00020007579) #37	C12orf50 (ENSOARG00020007620)
Caprinae	ANCESTRAL SPECIES		ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.cb.b	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a.n #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000013187.b	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Rambouillet Sheep	MODERN SPECIES	19	KRR1 (ENSOARG00020002893)	PHLDA1 (ENSOARG00020002913)	ENSOARG00020002933	OSBPL8 (ENSOARG00020003030) #7	BBS10 (ENSOARG00020003354)	ENSOARG00020003381	ZDHHC17 (ENSOARG00020003403) #9	CSRP2 (ENSOARG00020003468) #10	E2F7 (ENSOARG00020003529) #11	NAV3 (ENSOARG00020003813) #12	SYT1 (ENSOARG00020005626) #14	PAWR (ENSOARG00020005665) #16	PPP1R12A (ENSOARG00020005817) #18	PTPRQ (ENSOARG00020008080) #20	MYF6 (ENSOARG00020008943) #21	MYF6 (ENSOARG00020008989) #21	MYF5 (ENSOARG00020009026) #22	LIN7A (ENSOARG00020009053) #23	ACSS3 (ENSOARG00020009124) #25	PPFIA2 (ENSOARG00020009934) #26	CCDC59 (ENSOARG00020015621) #27	TMTC2 (ENSOARG00020015711) #29	SLC6A15 (ENSOARG00020007201) #32	TSPAN19 (ENSOARG00020007275)	ALX1 (ENSOARG00020007379) #34	RASSF9 (ENSOARG00020007430) #35	NTS (ENSOARG00020007471) #36	ENSOARG00020007547	MGAT4C (ENSOARG00020007579) #37	C12orf50 (ENSOARG00020007620)	C3H12orf29 (ENSOARG00020007796)
Goat	MODERN SPECIES	24	PHLDA1 (ENSCHIG00000005054)	BBS10 (ENSCHIG00000016567)	OSBPL8 (ENSCHIG00000010416) #7	ZDHHC17 (ENSCHIG00000009471) #9	CSRP2 (ENSCHIG00000025767) #10	E2F7 (ENSCHIG00000023455) #11	ENSCHIG00000017418	ENSCHIG00000009714	NAV3 (ENSCHIG00000012255) #12	ENSCHIG00000020619	SYT1 (ENSCHIG00000027174) #14	PAWR (ENSCHIG00000014049) #16	PPP1R12A (ENSCHIG00000007263) #18	OTOGL (ENSCHIG00000001357) #19	PTPRQ (ENSCHIG00000026657) #20	MYF6 (ENSCHIG00000021667) #21	MYF5 (ENSCHIG00000015029) #22	LIN7A (ENSCHIG00000003123) #23	ACSS3 (ENSCHIG00000023281) #25	PPFIA2 (ENSCHIG00000022919) #26	ENSCHIG00000005384	ENSCHIG00000025817 #27	METTL25 (ENSCHIG00000003929) #28	TMTC2 (ENSCHIG00000021548) #29	SLC6A15 (ENSCHIG00000017725) #32	TSPAN19 (ENSCHIG00000013366)	LRRIQ1 (ENSCHIG00000027155)	ALX1 (ENSCHIG00000025423) #34	RASSF9 (ENSCHIG00000024146) #35	NTS (ENSCHIG00000015085) #36	MGAT4C (ENSCHIG00000026547) #37
Bovinae	ANCESTRAL SPECIES	17	ENSGT00940000153362.a.cb.b.b	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00390000012446.o.b	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000013187.b	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
American bison	MODERN SPECIES	3377											SYT1 (ENSBBBG00000005031) #14	PAWR (ENSBBBG00000006786) #16	PPP1R12A (ENSBBBG00000020255) #18	OTOGL (ENSBBBG00000020070) #19	PTPRQ (ENSBBBG00000005139) #20	MYF6 (ENSBBBG00000007672) #21	MYF5 (ENSBBBG00000005327) #22	LIN7A (ENSBBBG00000019615) #23	ACSS3 (ENSBBBG00000019602) #25	PPFIA2 (ENSBBBG00000006966) #26	ENSBBBG00000004945	CCDC59 (ENSBBBG00000019197) #27	METTL25 (ENSBBBG00000004939) #28	TMTC2 (ENSBBBG00000009162) #29	SLC6A15 (ENSBBBG00000004924) #32	TSPAN19 (ENSBBBG00000019123)	LRRIQ1 (ENSBBBG00000004903)	ALX1 (ENSBBBG00000004860) #34	RASSF9 (ENSBBBG00000019025) #35	NTS (ENSBBBG00000019020) #36	MGAT4C (ENSBBBG00000004848) #37
Bos	ANCESTRAL SPECIES	2	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.b.a.a.a.b	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00390000012446.o.b	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000003710.c.a.b.b	ENSGT00390000006546.i #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Bos_a	ANCESTRAL SPECIES	3	ENSGT00940000153362.a.cb.b.b	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.b.a.a.a.b	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00390000012446.o.b	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.b.a.a.b.a.a.a	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000013187.b	ENSGT00390000003710.c.a.b.b	ENSGT00390000006546.i #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35
Wild yak	MODERN SPECIES	141																MYF6 (ENSBMUG00000012075) #21	MYF5 (ENSBMUG00000012079) #22	ENSBMUG00000012090 #23
Domestic yak	MODERN SPECIES	24	ZDHHC17 (ENSBGRG00000009471) #9	ENSBGRG00000009376 #10	E2F7 (ENSBGRG00000009145) #11	ENSBGRG00000009095	ENSBGRG00000009079	ENSBGRG00000009036	NAV3 (ENSBGRG00000007767) #12	SYT1 (ENSBGRG00000007621) #14	ENSBGRG00000007603	PAWR (ENSBGRG00000007479) #16	ENSBGRG00000007448	PPP1R12A (ENSBGRG00000006560) #18	OTOGL (ENSBGRG00000005461) #19	ENSBGRG00000005290	PTPRQ (ENSBGRG00000003831) #20	MYF6 (ENSBGRG00000003786) #21	MYF5 (ENSBGRG00000003759) #22	ENSBGRG00000003736	LIN7A (ENSBGRG00000003708) #23	ENSBGRG00000003689	ACSS3 (ENSBGRG00000003619) #25	ENSBGRG00000003602	ENSBGRG00000003592	PPFIA2 (ENSBGRG00000003359) #26	CCDC59 (ENSBGRG00000003316) #27	ENSBGRG00000003305	METTL25 (ENSBGRG00000003283) #28	ENSBGRG00000003272	TMTC2 (ENSBGRG00000003210) #29	ENSBGRG00000003173	ENSBGRG00000003156
Bos_b	ANCESTRAL SPECIES	4	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.b.a.a.a.b	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00390000012446.o.b	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT01030000234758.a.a.b.a.a.b.b.a.a	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000013187.b	ENSGT00390000006546.i #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00390000005003.k.b	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36
Cow	MODERN SPECIES	24	PHLDA1 (ENSBTAG00000034985)	BBS10 (ENSBTAG00000050467)	OSBPL8 (ENSBTAG00000004427) #7	ZDHHC17 (ENSBTAG00000021756) #9	CSRP2 (ENSBTAG00000013406) #10	E2F7 (ENSBTAG00000016931) #11	ENSBTAG00000054109	NAV3 (ENSBTAG00000009852) #12	ENSBTAG00000054695	SYT1 (ENSBTAG00000034693) #14	PAWR (ENSBTAG00000043949) #16	ENSBTAG00000048833	PPP1R12A (ENSBTAG00000014609) #18	OTOGL (ENSBTAG00000011336) #19	PTPRQ (ENSBTAG00000026977) #20	MYF6 (ENSBTAG00000014003) #21	MYF5 (ENSBTAG00000026972) #22	LIN7A (ENSBTAG00000011367) #23	ACSS3 (ENSBTAG00000018694) #25	PPFIA2 (ENSBTAG00000003036) #26	ENSBTAG00000053526	ENSBTAG00000052152	CCDC59 (ENSBTAG00000036282) #27	METTL25 (ENSBTAG00000008382) #28	TMTC2 (ENSBTAG00000002888) #29	ENSBTAG00000014765	SLC6A15 (ENSBTAG00000018432) #32	LRRIQ1 (ENSBTAG00000027900)	TSPAN19 (ENSBTAG00000047203)	ALX1 (ENSBTAG00000014977) #34	RASSF9 (ENSBTAG00000026966) #35
Hybrid Bos Indicus	MODERN SPECIES	24	BBS10 (ENSBIXG00005029298)	ENSBIXG00005029293	OSBPL8 (ENSBIXG00005007884) #7	ZDHHC17 (ENSBIXG00005000041) #9	CSRP2 (ENSBIXG00005007979) #10	E2F7 (ENSBIXG00005008016) #11	ENSBIXG00005008045	NAV3 (ENSBIXG00005000135) #12	ENSBIXG00005008283	SYT1 (ENSBIXG00005008356) #14	PAWR (ENSBIXG00005000179) #16	ENSBIXG00005000182	PPP1R12A (ENSBIXG00005000226) #18	OTOGL (ENSBIXG00005008900) #19	PTPRQ (ENSBIXG00005009087) #20	MYF6 (ENSBIXG00005009131) #21	MYF5 (ENSBIXG00005009143) #22	LIN7A (ENSBIXG00005009155) #23	ENSBIXG00005009169	ACSS3 (ENSBIXG00005009198) #25	ENSBIXG00005009217	ENSBIXG00005006705	PPFIA2 (ENSBIXG00005009447) #26	ENSBIXG00005009547 #27	ENSBIXG00005009553	METTL25 (ENSBIXG00005009587) #28	TMTC2 (ENSBIXG00005009679) #29	ENSBIXG00005000567	SLC6A15 (ENSBIXG00005009785) #32	TSPAN19 (ENSBIXG00005009801)	LRRIQ1 (ENSBIXG00005009865)
Laurasiatheria_b	ANCESTRAL SPECIES	6	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Carnivora	ANCESTRAL SPECIES	3	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Felidae	ANCESTRAL SPECIES	2	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Panthera	ANCESTRAL SPECIES		ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Tiger	MODERN SPECIES	285	GLIPR1L2 (ENSPTIG00000011160)	GLIPR1 (ENSPTIG00000010519)	KRR1 (ENSPTIG00000009202)	NAP1L1 (ENSPTIG00000003186)	BBS10 (ENSPTIG00000020383)	OSBPL8 (ENSPTIG00000019983) #7	ZDHHC17 (ENSPTIG00000019755) #9	CSRP2 (ENSPTIG00000019308) #10	E2F7 (ENSPTIG00000016920) #11	NAV3 (ENSPTIG00000013673) #12	SYT1 (ENSPTIG00000013094) #14	PAWR (ENSPTIG00000012722) #16	PPP1R12A (ENSPTIG00000003820) #18	OTOGL (ENSPTIG00000017536) #19	PTPRQ (ENSPTIG00000014182) #20	MYF6 (ENSPTIG00000014009) #21	MYF5 (ENSPTIG00000013849) #22	LIN7A (ENSPTIG00000013465) #23	ACSS3 (ENSPTIG00000013083) #25	PPFIA2 (ENSPTIG00000008257) #26
Panthera_a	ANCESTRAL SPECIES	12	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
lion	MODERN SPECIES	7	KRR1 (ENSPLOG00000001901)	PHLDA1 (ENSPLOG00000001933)	NAP1L1 (ENSPLOG00000001982)	BBS10 (ENSPLOG00000002053)	OSBPL8 (ENSPLOG00000002092) #7	ZDHHC17 (ENSPLOG00000002249) #9	CSRP2 (ENSPLOG00000002279) #10	E2F7 (ENSPLOG00000002314) #11	NAV3 (ENSPLOG00000002454) #12	ENSPLOG00000002650	SYT1 (ENSPLOG00000002662) #14	PAWR (ENSPLOG00000002686) #16	PPP1R12A (ENSPLOG00000002780) #18	OTOGL (ENSPLOG00000003151) #19	PTPRQ (ENSPLOG00000003543) #20	MYF6 (ENSPLOG00000003667) #21	MYF5 (ENSPLOG00000003675) #22	LIN7A (ENSPLOG00000003686) #23	ACSS3 (ENSPLOG00000003703) #25	PPFIA2 (ENSPLOG00000003973) #26	CCDC59 (ENSPLOG00000004335) #27	METTL25 (ENSPLOG00000004346) #28	TMTC2 (ENSPLOG00000004411) #29	SLC6A15 (ENSPLOG00000004444) #32	TSPAN19 (ENSPLOG00000004469)	ENSPLOG00000004490 #33	ALX1 (ENSPLOG00000004563) #34	RASSF9 (ENSPLOG00000004571) #35	NTS (ENSPLOG00000004580) #36	MGAT4C (ENSPLOG00000004588) #37	ENSPLOG00000004594
leopard	MODERN SPECIES	27	NAP1L1 (ENSPPRG00000001906)	ENSPPRG00000000117	BBS10 (ENSPPRG00000022774)	OSBPL8 (ENSPPRG00000023047) #7	ENSPPRG00000023878	ZDHHC17 (ENSPPRG00000024071) #9	CSRP2 (ENSPPRG00000024205) #10	E2F7 (ENSPPRG00000024442) #11	NAV3 (ENSPPRG00000022007) #12	SYT1 (ENSPPRG00000014210) #14	PAWR (ENSPPRG00000013959) #16	ENSPPRG00000013642	PPP1R12A (ENSPPRG00000012756) #18	OTOGL (ENSPPRG00000007761) #19	PTPRQ (ENSPPRG00000005300) #20	MYF6 (ENSPPRG00000003909) #21	MYF5 (ENSPPRG00000003820) #22	LIN7A (ENSPPRG00000003439) #23	ACSS3 (ENSPPRG00000003248) #25	PPFIA2 (ENSPPRG00000001816) #26	ENSPPRG00000024977	CCDC59 (ENSPPRG00000022500) #27	METTL25 (ENSPPRG00000020885) #28	TMTC2 (ENSPPRG00000018820) #29
Cat	MODERN SPECIES	238	KRR1 (ENSFCAG00000025788)	ENSFCAG00000050261	PHLDA1 (ENSFCAG00000032023)	NAP1L1 (ENSFCAG00000000279)	OSBPL8 (ENSFCAG00000027470) #7	ZDHHC17 (ENSFCAG00000027034) #9	CSRP2 (ENSFCAG00000006548) #10	E2F7 (ENSFCAG00000010756) #11	NAV3 (ENSFCAG00000013128) #12	ENSFCAG00000048215	SYT1 (ENSFCAG00000024865) #14	PAWR (ENSFCAG00000026300) #16	PPP1R12A (ENSFCAG00000027965) #18	OTOGL (ENSFCAG00000022141) #19	PTPRQ (ENSFCAG00000026313) #20	MYF6 (ENSFCAG00000015010) #21	MYF5 (ENSFCAG00000015011) #22	LIN7A (ENSFCAG00000015014) #23	ACSS3 (ENSFCAG00000012992) #25	PPFIA2 (ENSFCAG00000012993) #26	CCDC59 (ENSFCAG00000028462) #27	METTL25 (ENSFCAG00000013377) #28	ENSFCAG00000035513	TMTC2 (ENSFCAG00000024338) #29	SLC6A15 (ENSFCAG00000029283) #32	TSPAN19 (ENSFCAG00000025693)	LRRIQ1 (ENSFCAG00000031743)	ALX1 (ENSFCAG00000034933) #34	RASSF9 (ENSFCAG00000006978) #35	NTS (ENSFCAG00000031116) #36	MGAT4C (ENSFCAG00000011896) #37
Caniformia	ANCESTRAL SPECIES	20	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Caniformia_b	ANCESTRAL SPECIES	18	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Ursidae	ANCESTRAL SPECIES	13	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Ursus	ANCESTRAL SPECIES	260												ENSGT00940000155394 #14	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26
American black bear	MODERN SPECIES	3995																MYF6 (ENSUAMG00000017169) #21	MYF5 (ENSUAMG00000017165) #22
Polar bear	MODERN SPECIES	410												SYT1 (ENSUMAG00000004449) #14	PPP1R12A (ENSUMAG00000004409) #18	OTOGL (ENSUMAG00000004235) #19	PTPRQ (ENSUMAG00000004116) #20	MYF6 (ENSUMAG00000004099) #21	MYF5 (ENSUMAG00000004083) #22	LIN7A (ENSUMAG00000004070) #23	ACSS3 (ENSUMAG00000003597) #25	PPFIA2 (ENSUMAG00000003393) #26
Giant Panda	MODERN SPECIES	6	KRR1 (ENSAMEG00000006437)	PHLDA1 (ENSAMEG00000006460)	NAP1L1 (ENSAMEG00000006463)	BBS10 (ENSAMEG00000006510)	OSBPL8 (ENSAMEG00000006513) #7	ZDHHC17 (ENSAMEG00000006600) #9	CSRP2 (ENSAMEG00000006632) #10	E2F7 (ENSAMEG00000007247) #11	ENSAMEG00000024301	NAV3 (ENSAMEG00000006673) #12	SYT1 (ENSAMEG00000013376) #14	PAWR (ENSAMEG00000013370) #16	PPP1R12A (ENSAMEG00000013280) #18	OTOGL (ENSAMEG00000013267) #19	PTPRQ (ENSAMEG00000013219) #20	MYF6 (ENSAMEG00000027013) #21	MYF5 (ENSAMEG00000013193) #22	LIN7A (ENSAMEG00000013191) #23	ACSS3 (ENSAMEG00000013162) #25	PPFIA2 (ENSAMEG00000013096) #26	CCDC59 (ENSAMEG00000016875) #27	METTL25 (ENSAMEG00000016877) #28	TMTC2 (ENSAMEG00000016881) #29	SLC6A15 (ENSAMEG00000009013) #32	TSPAN19 (ENSAMEG00000009009)	LRRIQ1 (ENSAMEG00000024972)	ALX1 (ENSAMEG00000009049) #34	RASSF9 (ENSAMEG00000006110) #35	NTS (ENSAMEG00000006112) #36	MGAT4C (ENSAMEG00000006123) #37	C12orf50 (ENSAMEG00000002419)
Mustelinae	ANCESTRAL SPECIES	4	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215.b.a #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Ferret	MODERN SPECIES	546														ENSMPUG00000004956 #20	ENSMPUG00000004951 #20	MYF6 (ENSMPUG00000004945) #21	MYF5 (ENSMPUG00000004935) #22	LIN7A (ENSMPUG00000004898) #23	ACSS3 (ENSMPUG00000004881) #25	ENSMPUG00000004817 #26
American mink	MODERN SPECIES	22	ENSNVIG00000003475	ENSNVIG00000003110	BBS10 (ENSNVIG00000003073)	OSBPL8 (ENSNVIG00000002847) #7	ZDHHC17 (ENSNVIG00000002801) #9	ENSNVIG00000002763 #10	E2F7 (ENSNVIG00000002695) #11	NAV3 (ENSNVIG00000002412) #12	ENSNVIG00000002371	SYT1 (ENSNVIG00000002313) #14	PAWR (ENSNVIG00000002283) #16	PPP1R12A (ENSNVIG00000001940) #18	ENSNVIG00000001919	OTOGL (ENSNVIG00000001579) #19	PTPRQ (ENSNVIG00000001320) #20	MYF6 (ENSNVIG00000001298) #21	MYF5 (ENSNVIG00000001283) #22	LIN7A (ENSNVIG00000001269) #23	ACSS3 (ENSNVIG00000001229) #25	PPFIA2 (ENSNVIG00000000848) #26	TAP26 (ENSNVIG00000000828) #27	METTL25 (ENSNVIG00000000819) #28	TMTC2 (ENSNVIG00000000786) #29	ENSNVIG00000000773	S6A15 (ENSNVIG00000000728) #32	TSN19 (ENSNVIG00000000703)	LRRIQ1 (ENSNVIG00000000618)	ALX1 (ENSNVIG00000000603) #34	RASSF9 (ENSNVIG00000000592) #35	NEUT (ENSNVIG00000000561) #36	MGT4C (ENSNVIG00000000536) #37
Canidae	ANCESTRAL SPECIES	12	ENSGT00390000005922.b.d.b.a.j	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT01090000260040.a.a.a.c.b	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Canis_lupus	ANCESTRAL SPECIES	16	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713.q #11	ENSGT00940000158890.p.a.f	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT01090000260040.a.a.a.c.b	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Dingo	MODERN SPECIES	277	BBS10 (ENSCAFG00020015335)	OSBPL8 (ENSCAFG00020015356) #7	ZDHHC17 (ENSCAFG00020015453) #9	CSRP2 (ENSCAFG00020015512) #10	ENSCAFG00020015518 #11	ENSCAFG00020015522 #11	ENSCAFG00020015528	ENSCAFG00020015535	NAV3 (ENSCAFG00020015546) #12	ENSCAFG00020015601	SYT1 (ENSCAFG00020015603) #14	PAWR (ENSCAFG00020015607) #16	PPP1R12A (ENSCAFG00020015626) #18	OTOGL (ENSCAFG00020015840) #19	PTPRQ (ENSCAFG00020015957) #20	MYF6 (ENSCAFG00020016005) #21	MYF5 (ENSCAFG00020016010) #22	LIN7A (ENSCAFG00020016013) #23	ACSS3 (ENSCAFG00020016033) #25	PPFIA2 (ENSCAFG00020016113) #26	CCDC59 (ENSCAFG00020016153) #27	METTL25 (ENSCAFG00020016154) #28	TMTC2 (ENSCAFG00020016159) #29	ENSCAFG00020016180	SLC6A15 (ENSCAFG00020016183) #32	TSPAN19 (ENSCAFG00020016187)	LRRIQ1 (ENSCAFG00020016192)	ALX1 (ENSCAFG00020016217) #34	RASSF9 (ENSCAFG00020016220) #35	ENSCAFG00020016221	NTS (ENSCAFG00020016223) #36
Dog	MODERN SPECIES	6	ENSCAFG00845006055	OSBPL8 (ENSCAFG00845006103)	OSBPL8 (ENSCAFG00845006249) #7	ZDHHC17 (ENSCAFG00845006644) #9	ENSCAFG00845006746 #10	E2F7 (ENSCAFG00845006897) #11	ENSCAFG00845007259	NAV3 (ENSCAFG00845007345) #12	SYT1 (ENSCAFG00845007651) #14	PAWR (ENSCAFG00845007786) #16	PPP1R12A (ENSCAFG00845007952) #18	ENSCAFG00845008317	ENSCAFG00845008343	OTOGL (ENSCAFG00845008423) #19	PTPRQ (ENSCAFG00845008887) #20	MYF6 (ENSCAFG00845009704) #21	ENSCAFG00845009734 #22	LIN7A (ENSCAFG00845009762) #23	ACSS3 (ENSCAFG00845009887) #25	PPFIA2 (ENSCAFG00845010311) #26	CCDC59 (ENSCAFG00845011151) #27	METTL25 (ENSCAFG00845011219) #28	TMTC2 (ENSCAFG00845011393) #29	SLC6A15 (ENSCAFG00845011599) #32	TSPAN19 (ENSCAFG00845011710)	LRRIQ1 (ENSCAFG00845011806)	ALX1 (ENSCAFG00845012248) #34	RASSF9 (ENSCAFG00845012311) #35	ENSCAFG00845012341	NTS (ENSCAFG00845012392) #36	MGAT4C (ENSCAFG00845012439) #37
Red fox	MODERN SPECIES	9	KRR1 (ENSVVUG00000009566)	ENSVVUG00000009581	NAP1L1 (ENSVVUG00000009610)	BBS10 (ENSVVUG00000009650)	OSBPL8 (ENSVVUG00000009692) #7	ZDHHC17 (ENSVVUG00000009811) #9	CSRP2 (ENSVVUG00000009828) #10	E2F7 (ENSVVUG00000009839) #11	NAV3 (ENSVVUG00000009882) #12	SYT1 (ENSVVUG00000009998) #14	PAWR (ENSVVUG00000010028) #16	PPP1R12A (ENSVVUG00000010043) #18	OTOGL (ENSVVUG00000010103) #19	ENSVVUG00000010366	PTPRQ (ENSVVUG00000010403) #20	MYF6 (ENSVVUG00000010529) #21	ENSVVUG00000010537 #22	LIN7A (ENSVVUG00000010554) #23	ACSS3 (ENSVVUG00000010570) #25	PPFIA2 (ENSVVUG00000010745) #26	ENSVVUG00000010950	CCDC59 (ENSVVUG00000010954) #27	METTL25 (ENSVVUG00000010971) #28	TMTC2 (ENSVVUG00000011020) #29	SLC6A15 (ENSVVUG00000011094) #32	ENSVVUG00000011115	TSPAN19 (ENSVVUG00000011198)	LRRIQ1 (ENSVVUG00000011218)	ALX1 (ENSVVUG00000011346) #34	ENSVVUG00000011364	NTS (ENSVVUG00000011394) #36
Laurasiatheria_c	ANCESTRAL SPECIES	5	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Chiroptera	ANCESTRAL SPECIES	4	ENSGT00940000160727	ENSGT00390000018775	ENSGT00940000167051	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Megabat	MODERN SPECIES	899															ENSPVAG00000003333 #20	MYF6 (ENSPVAG00000003335) #21	MYF5 (ENSPVAG00000003336) #22	LIN7A (ENSPVAG00000003338) #23
Microchiroptera	ANCESTRAL SPECIES	2	ENSGT00940000160727	ENSGT00390000018775	ENSGT00940000167051	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Greater horseshoe bat	MODERN SPECIES	1	GLIPR1 (ENSRFEG00010004575)	ENSRFEG00010004593	ENSRFEG00010004601	NAP1L1 (ENSRFEG00010004645)	BBS10 (ENSRFEG00010004681)	OSBPL8 (ENSRFEG00010006253) #7	ZDHHC17 (ENSRFEG00010006316) #9	CSRP2 (ENSRFEG00010006389) #10	E2F7 (ENSRFEG00010006442) #11	NAV3 (ENSRFEG00010006668) #12	SYT1 (ENSRFEG00010007403) #14	PAWR (ENSRFEG00010007574) #16	PPP1R12A (ENSRFEG00010007686) #18	OTOGL (ENSRFEG00010007970) #19	PTPRQ (ENSRFEG00010009562) #20	MYF6 (ENSRFEG00010010368) #21	MYF5 (ENSRFEG00010010395) #22	LIN7A (ENSRFEG00010010463) #23	ACSS3 (ENSRFEG00010010509) #25	PPFIA2 (ENSRFEG00010011014) #26	CCDC59 (ENSRFEG00010014412) #27	METTL25 (ENSRFEG00010014462) #28	TMTC2 (ENSRFEG00010014525) #29	ENSRFEG00010014611	SLC6A15 (ENSRFEG00010014671) #32	TSPAN19 (ENSRFEG00010014831)	LRRIQ1 (ENSRFEG00010014978)	ALX1 (ENSRFEG00010015730) #34	RASSF9 (ENSRFEG00010015800) #35	NTS (ENSRFEG00010015856) #36	MGAT4C (ENSRFEG00010015934) #37
Microbat	MODERN SPECIES	946	NAP1L1 (ENSMLUG00000029307)	BBS10 (ENSMLUG00000001850)	OSBPL8 (ENSMLUG00000005046) #7	ENSMLUG00000029930	ENSMLUG00000003587	ZDHHC17 (ENSMLUG00000002375) #9	CSRP2 (ENSMLUG00000002384) #10	E2F7 (ENSMLUG00000012116) #11	NAV3 (ENSMLUG00000010374) #12	ENSMLUG00000027140	SYT1 (ENSMLUG00000005752) #14	ENSMLUG00000005757 #16	PPP1R12A (ENSMLUG00000005477) #18	OTOGL (ENSMLUG00000005553) #19	PTPRQ (ENSMLUG00000006091) #20	MYF6 (ENSMLUG00000004940) #21	MYF5 (ENSMLUG00000004943) #22	LIN7A (ENSMLUG00000001526) #23	ACSS3 (ENSMLUG00000001527) #25	PPFIA2 (ENSMLUG00000001537) #26	CCDC59 (ENSMLUG00000008071) #27	METTL25 (ENSMLUG00000008084) #28	TMTC2 (ENSMLUG00000010233) #29	SLC6A15 (ENSMLUG00000011461) #32	TSPAN19 (ENSMLUG00000030562)	ALX1 (ENSMLUG00000008586) #34	RASSF9 (ENSMLUG00000008746) #35	NTS (ENSMLUG00000008733) #36	ENSMLUG00000022318	MGAT4C (ENSMLUG00000012722) #37	LYNX1 (ENSMLUG00000028919)
Equus	ANCESTRAL SPECIES	21	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Horse	MODERN SPECIES	20	KRR1 (ENSECAG00000017498)	ENSECAG00000001900	NAP1L1 (ENSECAG00000000066)	BBS10 (ENSECAG00000015525)	OSBPL8 (ENSECAG00000015542) #7	ENSECAG00000058140	ZDHHC17 (ENSECAG00000006626) #9	CSRP2 (ENSECAG00000015606) #10	E2F7 (ENSECAG00000017963) #11	NAV3 (ENSECAG00000000121) #12	SYT1 (ENSECAG00000012832) #14	PAWR (ENSECAG00000019505) #16	PPP1R12A (ENSECAG00000020406) #18	OTOGL (ENSECAG00000009954) #19	PTPRQ (ENSECAG00000013221) #20	MYF5 (ENSECAG00000020047) #21	LIN7A (ENSECAG00000002823) #23	ACSS3 (ENSECAG00000008242) #25	PPFIA2 (ENSECAG00000011682) #26	CCDC59 (ENSECAG00000010450) #27	METTL25 (ENSECAG00000010894) #28	TMTC2 (ENSECAG00000014638) #29	SLC6A15 (ENSECAG00000018897) #32	TSPAN19 (ENSECAG00000037294)	LRRIQ1 (ENSECAG00000007701)	ALX1 (ENSECAG00000008597) #34	RASSF9 (ENSECAG00000002601) #35	NTS (ENSECAG00000010879) #36	MGAT4C (ENSECAG00000011971) #37	C28H12orf50 (ENSECAG00000014376)	C28H12orf29 (ENSECAG00000019028)
Donkey	MODERN SPECIES	11	GLIPR1 (ENSEASG00005024066)	KRR1 (ENSEASG00005021952)	PHLDA1 (ENSEASG00005027836)	NAP1L1 (ENSEASG00005021946)	BBS10 (ENSEASG00005021945)	OSBPL8 (ENSEASG00005021942) #7	ZDHHC17 (ENSEASG00005021939) #9	ENSEASG00005021936 #10	E2F7 (ENSEASG00005021935) #11	NAV3 (ENSEASG00005021551) #12	SYT1 (ENSEASG00005021375) #14	PAWR (ENSEASG00005033077) #16	PPP1R12A (ENSEASG00005021353) #18	OTOGL (ENSEASG00005021304) #19	PTPRQ (ENSEASG00005021271) #20	MYF6 (ENSEASG00005021268) #21	MYF5 (ENSEASG00005021266) #22	LIN7A (ENSEASG00005021265) #23	ENSEASG00005024557	ACSS3 (ENSEASG00005021261) #25	PPFIA2 (ENSEASG00005021241) #26	ENSEASG00005011113	CCDC59 (ENSEASG00005021237) #27	METTL25 (ENSEASG00005021236) #28	TMTC2 (ENSEASG00005021228) #29	SLC6A15 (ENSEASG00005021226) #32	TSPAN19 (ENSEASG00005021223)	LRRIQ1 (ENSEASG00005021215)	ALX1 (ENSEASG00005021209) #34	RASSF9 (ENSEASG00005030833) #35	ENSEASG00005027182 #36
Euarchontoglires	ANCESTRAL SPECIES	6	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Tree shrew	MODERN SPECIES	370																MYF6 (ENSTBEG00000007822) #21	MYF5 (ENSTBEG00000008363) #22
Glires	ANCESTRAL SPECIES	4	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Lagomorpha	ANCESTRAL SPECIES	113	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Rabbit	MODERN SPECIES	15	ENSOCUG00000032449	ENSOCUG00000028124	ZDHHC17 (ENSOCUG00000010401) #9	ENSOCUG00000027238	ENSOCUG00000008330 #10	E2F7 (ENSOCUG00000004932) #11	ENSOCUG00000025947	NAV3 (ENSOCUG00000004936) #12	ENSOCUG00000005148	SYT1 (ENSOCUG00000014829) #14	PAWR (ENSOCUG00000013722) #16	PPP1R12A (ENSOCUG00000016701) #18	ENSOCUG00000037584	OTOGL (ENSOCUG00000014963) #19	PTPRQ (ENSOCUG00000011455) #20	MYF6 (ENSOCUG00000001457) #21	MYF5 (ENSOCUG00000025477) #22	LIN7A (ENSOCUG00000004203) #23	ACSS3 (ENSOCUG00000015752) #25	PPFIA2 (ENSOCUG00000015770) #26	ENSOCUG00000036764	CCDC59 (ENSOCUG00000017824) #27	METTL25 (ENSOCUG00000017825) #28	TMTC2 (ENSOCUG00000017847) #29	SLC6A15 (ENSOCUG00000014066) #32	TSPAN19 (ENSOCUG00000037319)	ENSOCUG00000034706	LRRIQ1 (ENSOCUG00000017527)	ALX1 (ENSOCUG00000009125) #34	ENSOCUG00000036577	RASSF9 (ENSOCUG00000017872) #35
Pika	MODERN SPECIES	1627															ENSOPRG00000008989 #20	MYF6 (ENSOPRG00000008999) #21	MYF5 (ENSOPRG00000009007) #22	LIN7A (ENSOPRG00000009017) #23
Rodentia	ANCESTRAL SPECIES	5	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Hystricomorpha	ANCESTRAL SPECIES	9	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Naked mole-rat female	MODERN SPECIES	8	ENSHGLG00000008641	ENSHGLG00000044176	ENSHGLG00000004489	ENSHGLG00000009233 #9	ENSHGLG00000008206 #10	E2F7 (ENSHGLG00000006491) #11	NAV3 (ENSHGLG00000012083) #12	ENSHGLG00000010015	ENSHGLG00000042592	SYT1 (ENSHGLG00000047548) #14	PAWR (ENSHGLG00000017940) #16	ENSHGLG00000036431	PPP1R12A (ENSHGLG00000014201) #18	OTOGL (ENSHGLG00000013295) #19	PTPRQ (ENSHGLG00000011762) #20	MYF6 (ENSHGLG00000003419) #21	MYF5 (ENSHGLG00000003654) #22	ENSHGLG00000003757 #23	ACSS3 (ENSHGLG00000004579) #25	PPFIA2 (ENSHGLG00000000429) #26	ENSHGLG00000036317	CCDC59 (ENSHGLG00000001711) #27	METTL25 (ENSHGLG00000038393) #28	TMTC2 (ENSHGLG00000000320) #29	ENSHGLG00000018244	ENSHGLG00000000758	ENSHGLG00000000965 #32	LRRIQ1 (ENSHGLG00000000302)	ALX1 (ENSHGLG00000000937) #34	ENSHGLG00000036253	RASSF9 (ENSHGLG00000034316) #35
Hystricomorpha_a	ANCESTRAL SPECIES	7	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Hystricomorpha_b	ANCESTRAL SPECIES	13	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Long-tailed chinchilla	MODERN SPECIES	112	PHLDA1 (ENSCLAG00000006934)	ENSCLAG00000005333	BBS10 (ENSCLAG00000007902)	OSBPL8 (ENSCLAG00000010204) #7	ENSCLAG00000017859	ZDHHC17 (ENSCLAG00000011124) #9	CSRP2 (ENSCLAG00000008899) #10	E2F7 (ENSCLAG00000007164) #11	NAV3 (ENSCLAG00000012036) #12	ENSCLAG00000005685	SYT1 (ENSCLAG00000004862) #14	PAWR (ENSCLAG00000008196) #16	PPP1R12A (ENSCLAG00000006399) #18	OTOGL (ENSCLAG00000006526) #19	PTPRQ (ENSCLAG00000012232) #20	MYF6 (ENSCLAG00000013875) #21	MYF5 (ENSCLAG00000014410) #22	ENSCLAG00000013764 #23	ACSS3 (ENSCLAG00000005808) #25	PPFIA2 (ENSCLAG00000008120) #26	CCDC59 (ENSCLAG00000015050) #27	METTL25 (ENSCLAG00000014989) #28	TMTC2 (ENSCLAG00000008519) #29	SLC6A15 (ENSCLAG00000009597) #32	LRRIQ1 (ENSCLAG00000007042)	ALX1 (ENSCLAG00000007151) #34	RASSF9 (ENSCLAG00000007610) #35	NTS (ENSCLAG00000007844) #36	MGAT4C (ENSCLAG00000008726) #37	C12orf50 (ENSCLAG00000006991)	C12orf29 (ENSCLAG00000004653)
Degu	MODERN SPECIES	45	BBS10 (ENSODEG00000007380)	OSBPL8 (ENSODEG00000007618) #7	ENSODEG00000007367 #8	ZDHHC17 (ENSODEG00000010670) #9	CSRP2 (ENSODEG00000008449) #10	ENSODEG00000008575 #11	NAV3 (ENSODEG00000010398) #12	ENSODEG00000007970 #13	SYT1 (ENSODEG00000008387) #14	ENSODEG00000007440 #15	PAWR (ENSODEG00000008160) #16	ENSODEG00000019636 #17	PPP1R12A (ENSODEG00000009363) #18	OTOGL (ENSODEG00000007895) #19	PTPRQ (ENSODEG00000007761) #20	MYF6 (ENSODEG00000007305) #21	MYF5 (ENSODEG00000007510) #22	LIN7A (ENSODEG00000007832) #23	ENSODEG00000019454 #24	ACSS3 (ENSODEG00000007503) #25	PPFIA2 (ENSODEG00000007419) #26	CCDC59 (ENSODEG00000009427) #27	METTL25 (ENSODEG00000010203) #28	TMTC2 (ENSODEG00000007730) #29	ENSODEG00000009267 #30	ENSODEG00000009875 #31	SLC6A15 (ENSODEG00000007508) #32	ENSODEG00000007801 #33	ALX1 (ENSODEG00000008008) #34	RASSF9 (ENSODEG00000008024) #35	NTS (ENSODEG00000008426) #36
Guinea pig	MODERN SPECIES	9	GLIPR1 (ENSCPOG00000014351)	KRR1 (ENSCPOG00000014353)	PHLDA1 (ENSCPOG00000003245)	NAP1L1 (ENSCPOG00000019420)	BBS10 (ENSCPOG00000038158)	OSBPL8 (ENSCPOG00000001130) #7	ZDHHC17 (ENSCPOG00000012534) #9	CSRP2 (ENSCPOG00000031460) #10	E2F7 (ENSCPOG00000007375) #11	NAV3 (ENSCPOG00000015431) #12	SYT1 (ENSCPOG00000002054) #14	PAWR (ENSCPOG00000002469) #16	PPP1R12A (ENSCPOG00000004019) #18	OTOGL (ENSCPOG00000022231) #19	PTPRQ (ENSCPOG00000031105) #20	MYF6 (ENSCPOG00000030745) #21	MYF5 (ENSCPOG00000007766) #22	LIN7A (ENSCPOG00000001373) #23	ACSS3 (ENSCPOG00000003451) #25	PPFIA2 (ENSCPOG00000003459) #26	CCDC59 (ENSCPOG00000036718) #27	METTL25 (ENSCPOG00000011621) #28	TMTC2 (ENSCPOG00000005425) #29	SLC6A15 (ENSCPOG00000003103) #32	ENSCPOG00000022026 #33	ALX1 (ENSCPOG00000027131) #34	ENSCPOG00000040399	RASSF9 (ENSCPOG00000030989) #35	NTS (ENSCPOG00000006576) #36	MGAT4C (ENSCPOG00000013992) #37	C12orf50 (ENSCPOG00000012468)
Sciuridae	ANCESTRAL SPECIES	14	ENSGT00390000018775.ab	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Marmotini	ANCESTRAL SPECIES	4	ENSGT00940000160727	ENSGT00390000018775.ab	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00390000009130.a.a.b.h
Marmotini_b	ANCESTRAL SPECIES	3	ENSGT00940000160727	ENSGT00390000018775.ab	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00390000009130.a.a.b.h
Arctic ground squirrel	MODERN SPECIES	89															PTPRQ (ENSUPAG00010013494) #20	MYF6 (ENSUPAG00010013483) #21	MYF5 (ENSUPAG00010013472) #22	LIN7A (ENSUPAG00010013458) #23	ACSS3 (ENSUPAG00010013440) #25	PPFIA2 (ENSUPAG00010013381) #26	CCDC59 (ENSUPAG00010013356) #27	METTL25 (ENSUPAG00010013340) #28	TMTC2 (ENSUPAG00010013331) #29	ENSUPAG00010013316	SLC6A15 (ENSUPAG00010013281) #32	TSPAN19 (ENSUPAG00010013269)	ENSUPAG00010013204 #33	ALX1 (ENSUPAG00010013178) #34	RASSF9 (ENSUPAG00010013163) #35	NTS (ENSUPAG00010013159) #36	MGAT4C (ENSUPAG00010013143) #37
Squirrel	MODERN SPECIES	298											SYT1 (ENSSTOG00000022817) #14	PAWR (ENSSTOG00000015765) #16	PPP1R12A (ENSSTOG00000011329) #18	OTOGL (ENSSTOG00000019523) #19	PTPRQ (ENSSTOG00000024058) #20	MYF6 (ENSSTOG00000015808) #21	MYF5 (ENSSTOG00000015810) #22	LIN7A (ENSSTOG00000015812) #23	ACSS3 (ENSSTOG00000013956) #25	PPFIA2 (ENSSTOG00000013971) #26
Alpin marmot	MODERN SPECIES	11	GLIPR1L2 (ENSMMMG00000002582)	GLIPR1 (ENSMMMG00000002546)	KRR1 (ENSMMMG00000002493)	PHLDA1 (ENSMMMG00000002474)	ENSMMMG00000002289	BBS10 (ENSMMMG00000002273)	OSBPL8 (ENSMMMG00000002240) #7	ZDHHC17 (ENSMMMG00000002185) #9	ENSMMMG00000002164 #10	E2F7 (ENSMMMG00000002119) #11	NAV3 (ENSMMMG00000002035) #12	SYT1 (ENSMMMG00000001991) #14	PPP1R12A (ENSMMMG00000001751) #18	OTOGL (ENSMMMG00000001599) #19	PTPRQ (ENSMMMG00000001485) #20	MYF6 (ENSMMMG00000001463) #21	MYF5 (ENSMMMG00000001446) #22	LIN7A (ENSMMMG00000001429) #23	ACSS3 (ENSMMMG00000001391) #25	PPFIA2 (ENSMMMG00000001244) #26	CCDC59 (ENSMMMG00000001213) #27	METTL25 (ENSMMMG00000001158) #28	TMTC2 (ENSMMMG00000001120) #29	ENSMMMG00000001090	SLC6A15 (ENSMMMG00000001050) #32	TSPAN19 (ENSMMMG00000001031)	LRRIQ1 (ENSMMMG00000000979)	ALX1 (ENSMMMG00000000949) #34	NTS (ENSMMMG00000000924) #36	MGAT4C (ENSMMMG00000000872) #37	ENSMMMG00000000843
Eurasian red squirrel	MODERN SPECIES	14	ENSSVLG00005023108	NAP1L1 (ENSSVLG00005023160)	BBS10 (ENSSVLG00005023257)	ENSSVLG00005023266	OSBPL8 (ENSSVLG00005023307) #7	ZDHHC17 (ENSSVLG00005023480) #9	ENSSVLG00005023521 #10	E2F7 (ENSSVLG00005023615) #11	ENSSVLG00005023728	NAV3 (ENSSVLG00005023837) #12	SYT1 (ENSSVLG00005024299) #14	PAWR (ENSSVLG00005024360) #16	PPP1R12A (ENSSVLG00005024407) #18	OTOGL (ENSSVLG00005024601) #19	PTPRQ (ENSSVLG00005025041) #20	MYF6 (ENSSVLG00005025222) #21	MYF5 (ENSSVLG00005025239) #22	LIN7A (ENSSVLG00005025250) #23	BLVRB (ENSSVLG00005025266)	ACSS3 (ENSSVLG00005000239) #25	PPFIA2 (ENSSVLG00005001201) #26	CCDC59 (ENSSVLG00005002316) #27	METTL25 (ENSSVLG00005002343) #28	TMTC2 (ENSSVLG00005002395) #29	SLC6A15 (ENSSVLG00005002476) #32	TSPAN19 (ENSSVLG00005002560)	LRRIQ1 (ENSSVLG00005002609)	ALX1 (ENSSVLG00005002747) #34	RASSF9 (ENSSVLG00005002780) #35	NTS (ENSSVLG00005002800) #36	MGAT4C (ENSSVLG00005002827) #37
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Kangaroo rat	MODERN SPECIES	322	ENSDORG00000004614	ENSDORG00000023399	Phlda1 (ENSDORG00000027757)	Nap1l1 (ENSDORG00000029138)	Bbs10 (ENSDORG00000000668)	Osbpl8 (ENSDORG00000000670) #7	Zdhhc17 (ENSDORG00000012435) #9	Csrp2 (ENSDORG00000012441) #10	ENSDORG00000026154 #11	Nav3 (ENSDORG00000011080) #12	Syt1 (ENSDORG00000003724) #14	Pawr (ENSDORG00000029489) #16	Ppp1r12a (ENSDORG00000007157) #18	Otogl (ENSDORG00000028677) #19	Ptprq (ENSDORG00000023208) #20	Myf6 (ENSDORG00000015435) #21	Myf5 (ENSDORG00000015437) #22	Lin7a (ENSDORG00000014355) #23	Acss3 (ENSDORG00000007288) #25	Ppfia2 (ENSDORG00000007289) #26	Mettl25 (ENSDORG00000003006) #28	Tmtc2 (ENSDORG00000005875) #29	Slc6a15 (ENSDORG00000000388) #32	ENSDORG00000008703	ENSDORG00000011012 #33	Alx1 (ENSDORG00000011021) #34	Rassf9 (ENSDORG00000029782) #35	Nts (ENSDORG00000016284) #36	Mgat4c (ENSDORG00000025545) #37	1700017N19Rik (ENSDORG00000015892)	4930430F08Rik (ENSDORG00000015893)
Myomorpha	ANCESTRAL SPECIES	2	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Lesser Egyptian jerboa	MODERN SPECIES	42	ENSJJAG00000024142	Bbs10 (ENSJJAG00000023405)	Osbpl8 (ENSJJAG00000024252) #7	ENSJJAG00000011419 #9	ENSJJAG00000014135 #10	ENSJJAG00000005723	E2f7 (ENSJJAG00000007878) #11	ENSJJAG00000010552	Nav3 (ENSJJAG00000012332) #12	ENSJJAG00000022372	Syt1 (ENSJJAG00000023399) #14	Pawr (ENSJJAG00000018666) #16	Ppp1r12a (ENSJJAG00000023796) #18	Otogl (ENSJJAG00000019493) #19	Ptprq (ENSJJAG00000017741) #20	Myf6 (ENSJJAG00000011250) #21	Myf5 (ENSJJAG00000003407) #22	Lin7a (ENSJJAG00000023503) #23	Acss3 (ENSJJAG00000008308) #25	Ppfia2 (ENSJJAG00000006298) #26	ENSJJAG00000003779	Ccdc59 (ENSJJAG00000015263) #27	Mettl25 (ENSJJAG00000023860) #28	Tmtc2 (ENSJJAG00000016641) #29	Slc6a15 (ENSJJAG00000006373) #32	Alx1 (ENSJJAG00000006817) #34	ENSJJAG00000002806	Rassf9 (ENSJJAG00000013251) #35	Nts (ENSJJAG00000014653) #36	Mgat4c (ENSJJAG00000021989) #37	1700017N19Rik (ENSJJAG00000023823)
Muroidea	ANCESTRAL SPECIES	5	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Muroidea_A	ANCESTRAL SPECIES	22	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Cricetidae	ANCESTRAL SPECIES	21	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Cricetinae	ANCESTRAL SPECIES	22	ENSGT00940000167051	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Golden Hamster	MODERN SPECIES	628	Krr1 (ENSMAUG00000021283)	ENSMAUG00000021584	Nap1l1 (ENSMAUG00000016700)	Bbs10 (ENSMAUG00000018240)	Osbpl8 (ENSMAUG00000022092) #7	Zdhhc17 (ENSMAUG00000021687) #9	Csrp2 (ENSMAUG00000018727) #10	E2f7 (ENSMAUG00000010792) #11	Nav3 (ENSMAUG00000012505) #12	ENSMAUG00000014224	Syt1 (ENSMAUG00000012263) #14	ENSMAUG00000008984	Ppp1r12a (ENSMAUG00000021712) #18	Otogl (ENSMAUG00000009930) #19	Ptprq (ENSMAUG00000014282) #20	Myf6 (ENSMAUG00000019329) #21	Myf5 (ENSMAUG00000000933) #22	Lin7a (ENSMAUG00000007088) #23	Acss3 (ENSMAUG00000014131) #25	ENSMAUG00000019031	Ppfia2 (ENSMAUG00000021622) #26	Ccdc59 (ENSMAUG00000017516) #27	Mettl25 (ENSMAUG00000020950) #28	Tmtc2 (ENSMAUG00000015691) #29	Slc6a15 (ENSMAUG00000018360) #32	ENSMAUG00000001372 #33	Alx1 (ENSMAUG00000015563) #34	Rassf9 (ENSMAUG00000012420) #35	Nts (ENSMAUG00000013146) #36	ENSMAUG00000004735 #37	ENSMAUG00000008756
Chinese hamster chok1gshd	MODERN SPECIES	83	Bbs10 (ENSCGRG00001010466)	Osbpl8 (ENSCGRG00001021286) #7	Zdhhc17 (ENSCGRG00001007660) #9	Csrp2 (ENSCGRG00001000844) #10	E2f7 (ENSCGRG00001006568) #11	ENSCGRG00001011762	Nav3 (ENSCGRG00001022037) #12	Brcc3dc (ENSCGRG00001009076)	Syt1 (ENSCGRG00001000069) #14	ENSCGRG00001010398	ENSCGRG00001009057	Pawr (ENSCGRG00001011044) #16	Ppp1r12a (ENSCGRG00001017263) #18	Otogl (ENSCGRG00001018530) #19	Ptprq (ENSCGRG00001017128) #20	Myf6 (ENSCGRG00001006341) #21	Myf5 (ENSCGRG00001009370) #22	Lin7a (ENSCGRG00001003313) #23	Acss3 (ENSCGRG00001009906) #25	Ppfia2 (ENSCGRG00001020914) #26	ENSCGRG00001016413 #28	Syn3 (ENSCGRG00001000589)	Timp3 (ENSCGRG00001016875)	Fbxo7 (ENSCGRG00001019488)	Bpifc (ENSCGRG00001023438)	Rtcb (ENSCGRG00001011173)	Ascl4 (ENSCGRG00001008661)	ENSCGRG00001015102	Pwp1 (ENSCGRG00001019668)	Abtb3 (ENSCGRG00001021266)	Cry1 (ENSCGRG00001001431)
Cricetidae_B	ANCESTRAL SPECIES	29	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Prairie vole	MODERN SPECIES	10	Krr1 (ENSMOCG00000018635)	Phlda1 (ENSMOCG00000021889)	Nap1l1 (ENSMOCG00000012136)	Bbs10 (ENSMOCG00000020010)	Osbpl8 (ENSMOCG00000016633) #7	Zdhhc17 (ENSMOCG00000002407) #9	Csrp2 (ENSMOCG00000007217) #10	E2f7 (ENSMOCG00000021130) #11	Nav3 (ENSMOCG00000018391) #12	ENSMOCG00000020523	Syt1 (ENSMOCG00000012503) #14	Pawr (ENSMOCG00000019570) #16	Ppp1r12a (ENSMOCG00000018418) #18	Otogl (ENSMOCG00000018409) #19	Ptprq (ENSMOCG00000017842) #20	Myf6 (ENSMOCG00000015833) #21	Myf5 (ENSMOCG00000017847) #22	Lin7a (ENSMOCG00000021369) #23	Acss3 (ENSMOCG00000012086) #25	Ppfia2 (ENSMOCG00000007873) #26	Ccdc59 (ENSMOCG00000006690) #27	Mettl25 (ENSMOCG00000018000) #28	Tmtc2 (ENSMOCG00000012479) #29	ENSMOCG00000016887	ENSMOCG00000010194	Slc6a15 (ENSMOCG00000002838) #32	ENSMOCG00000019991 #33	Alx1 (ENSMOCG00000007046) #34	Rassf9 (ENSMOCG00000010972) #35	Nts (ENSMOCG00000000690) #36	Mgat4c (ENSMOCG00000012409) #37
Northern American deer mouse	MODERN SPECIES	9	Krr1 (ENSPEMG00000020228)	Phlda1 (ENSPEMG00000020277)	Nap1l1 (ENSPEMG00000000646)	Bbs10 (ENSPEMG00000031116)	Osbpl8 (ENSPEMG00000008934) #7	Zdhhc17 (ENSPEMG00000011257) #9	Csrp2 (ENSPEMG00000012653) #10	E2f7 (ENSPEMG00000013555) #11	Nav3 (ENSPEMG00000003783) #12	Brcc3dc (ENSPEMG00000012864)	Syt1 (ENSPEMG00000011853) #14	Pawr (ENSPEMG00000031267) #16	Ppp1r12a (ENSPEMG00000011824) #18	Otogl (ENSPEMG00000005921) #19	Ptprq (ENSPEMG00000019976) #20	Myf6 (ENSPEMG00000019751) #21	Myf5 (ENSPEMG00000018818) #22	Lin7a (ENSPEMG00000018576) #23	Acss3 (ENSPEMG00000017696) #25	Ppfia2 (ENSPEMG00000015993) #26	Ccdc59 (ENSPEMG00000031144) #27	Mettl25 (ENSPEMG00000013112) #28	Tmtc2 (ENSPEMG00000020725) #29	Mgat4c (ENSPEMG00000019377) #37	Nts (ENSPEMG00000024525) #36	Rassf9 (ENSPEMG00000012691) #35	Alx1 (ENSPEMG00000011110) #34	Lrriq1 (ENSPEMG00000012353)	Slc6a15 (ENSPEMG00000010154) #32	1700017N19Rik (ENSPEMG00000010447)	4930430F08Rik (ENSPEMG00000016254)
Murinae	ANCESTRAL SPECIES	22	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Mus	ANCESTRAL SPECIES	23	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Mus_A	ANCESTRAL SPECIES	11	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Ryukyu mouse	MODERN SPECIES	1	Glipr1 (MGP_CAROLIEiJ_G0015801)	Krr1 (MGP_CAROLIEiJ_G0015800)	Phlda1 (MGP_CAROLIEiJ_G0015799)	Nap1l1 (MGP_CAROLIEiJ_G0015798)	Bbs10 (MGP_CAROLIEiJ_G0015797)	Osbpl8 (MGP_CAROLIEiJ_G0015796) #7	Zdhhc17 (MGP_CAROLIEiJ_G0015795) #9	Csrp2 (MGP_CAROLIEiJ_G0015794) #10	E2f7 (MGP_CAROLIEiJ_G0015793) #11	Nav3 (MGP_CAROLIEiJ_G0015792) #12	Syt1 (MGP_CAROLIEiJ_G0015791) #14	MGP_CAROLIEiJ_G0015790 #16	Ppp1r12a (MGP_CAROLIEiJ_G0015789) #18	Otogl (MGP_CAROLIEiJ_G0015788) #19	Ptprq (MGP_CAROLIEiJ_G0015787) #20	Myf6 (MGP_CAROLIEiJ_G0015786) #21	Myf5 (MGP_CAROLIEiJ_G0015785) #22	Lin7a (MGP_CAROLIEiJ_G0015784) #23	Acss3 (MGP_CAROLIEiJ_G0015783) #25	Ppfia2 (MGP_CAROLIEiJ_G0015782) #26	Ccdc59 (MGP_CAROLIEiJ_G0015781) #27	Mettl25 (MGP_CAROLIEiJ_G0015780) #28	Tmtc2 (MGP_CAROLIEiJ_G0015779) #29	Slc6a15 (MGP_CAROLIEiJ_G0015778) #32	MGP_CAROLIEiJ_G0015777	Alx1 (MGP_CAROLIEiJ_G0015776) #34	Rassf9 (MGP_CAROLIEiJ_G0015775) #35	Nts (MGP_CAROLIEiJ_G0015774) #36	Mgat4c (MGP_CAROLIEiJ_G0015773) #37	1700017N19Rik (MGP_CAROLIEiJ_G0015772)	4930430F08Rik (MGP_CAROLIEiJ_G0015771)
Mus_B	ANCESTRAL SPECIES	10	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Mouse	MODERN SPECIES	1	Krr1 (ENSMUSG00000063334)	Phlda1 (ENSMUSG00000020205)	Nap1l1 (ENSMUSG00000058799)	Bbs10 (ENSMUSG00000035759)	Osbpl8 (ENSMUSG00000020189) #7	Zdhhc17 (ENSMUSG00000035798) #9	Csrp2 (ENSMUSG00000020186) #10	E2f7 (ENSMUSG00000020185) #11	Nav3 (ENSMUSG00000020181) #12	Brcc3dc (ENSMUSG00000112039)	Syt1 (ENSMUSG00000035864) #14	Pawr (ENSMUSG00000035873) #16	Ppp1r12a (ENSMUSG00000019907) #18	Otogl (ENSMUSG00000091455) #19	Ptprq (ENSMUSG00000035916) #20	Myf6 (ENSMUSG00000035923) #21	Myf5 (ENSMUSG00000000435) #22	Lin7a (ENSMUSG00000019906) #23	Acss3 (ENSMUSG00000035948) #25	Ppfia2 (ENSMUSG00000053825) #26	Ccdc59 (ENSMUSG00000019897) #27	Mettl25 (ENSMUSG00000036009) #28	Tmtc2 (ENSMUSG00000036019) #29	Gm4340 (ENSMUSG00000090854)	Gm20765 (ENSMUSG00000095022)	Gm21312 (ENSMUSG00000094144)	Gm21304 (ENSMUSG00000097550)	Gm8764 (ENSMUSG00000097878)	Gm6763 (ENSMUSG00000097427)	Gm21293 (ENSMUSG00000091779)	Slc6a15 (ENSMUSG00000019894) #32
Mus_C	ANCESTRAL SPECIES	7	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Steppe mouse	MODERN SPECIES	3222								Nav3 (ENSMSIG00000028730) #12	Syt1 (ENSMSIG00000028850) #14	Pawr (ENSMSIG00000028867) #16	Ppp1r12a (ENSMSIG00000028882) #18	ENSMSIG00000029031	ENSMSIG00000029033	Otogl (ENSMSIG00000029034) #19	Ptprq (ENSMSIG00000029070) #20	Myf6 (ENSMSIG00000029104) #21	Myf5 (ENSMSIG00000029106) #22
spretus	MODERN SPECIES	1	Glipr1 (MGP_SPRETEiJ_G0016623)	Krr1 (MGP_SPRETEiJ_G0016622)	Phlda1 (MGP_SPRETEiJ_G0016621)	Nap1l1 (MGP_SPRETEiJ_G0016620)	Bbs10 (MGP_SPRETEiJ_G0016619)	Osbpl8 (MGP_SPRETEiJ_G0016618) #7	Zdhhc17 (MGP_SPRETEiJ_G0016617) #9	Csrp2 (MGP_SPRETEiJ_G0016616) #10	E2f7 (MGP_SPRETEiJ_G0016615) #11	Nav3 (MGP_SPRETEiJ_G0016614) #12	Syt1 (MGP_SPRETEiJ_G0016613) #14	Pawr (MGP_SPRETEiJ_G0016612) #16	Ppp1r12a (MGP_SPRETEiJ_G0016611) #18	Otogl (MGP_SPRETEiJ_G0016610) #19	Ptprq (MGP_SPRETEiJ_G0016609) #20	Myf6 (MGP_SPRETEiJ_G0016608) #21	Myf5 (MGP_SPRETEiJ_G0016607) #22	Lin7a (MGP_SPRETEiJ_G0016606) #23	Acss3 (MGP_SPRETEiJ_G0016605) #25	Ppfia2 (MGP_SPRETEiJ_G0016604) #26	Ccdc59 (MGP_SPRETEiJ_G0016603) #27	Mettl25 (MGP_SPRETEiJ_G0016602) #28	Tmtc2 (MGP_SPRETEiJ_G0016601) #29	Slc6a15 (MGP_SPRETEiJ_G0016600) #32	MGP_SPRETEiJ_G0016599	Alx1 (MGP_SPRETEiJ_G0016598) #34	Rassf9 (MGP_SPRETEiJ_G0016597) #35	Nts (MGP_SPRETEiJ_G0016596) #36	Mgat4c (MGP_SPRETEiJ_G0016595) #37	1700017N19Rik (MGP_SPRETEiJ_G0016594)	4930430F08Rik (MGP_SPRETEiJ_G0016593)
Shrew mouse	MODERN SPECIES	22	Glipr1 (MGP_PahariEiJ_G0031286)	Krr1 (MGP_PahariEiJ_G0031287)	Phlda1 (MGP_PahariEiJ_G0031288)	MGP_PahariEiJ_G0031289	Bbs10 (MGP_PahariEiJ_G0031290)	Osbpl8 (MGP_PahariEiJ_G0031291) #7	Zdhhc17 (MGP_PahariEiJ_G0031292) #9	Csrp2 (MGP_PahariEiJ_G0031293) #10	E2f7 (MGP_PahariEiJ_G0031294) #11	MGP_PahariEiJ_G0031295 #12	Syt1 (MGP_PahariEiJ_G0031296) #14	Pawr (MGP_PahariEiJ_G0031297) #16	Ppp1r12a (MGP_PahariEiJ_G0031298) #18	MGP_PahariEiJ_G0031299 #19	Ptprq (MGP_PahariEiJ_G0031300) #20	Myf6 (MGP_PahariEiJ_G0031301) #21	Myf5 (MGP_PahariEiJ_G0031302) #22	Lin7a (MGP_PahariEiJ_G0031303) #23	Acss3 (MGP_PahariEiJ_G0031304) #25	Ppfia2 (MGP_PahariEiJ_G0031305) #26	Ccdc59 (MGP_PahariEiJ_G0031306) #27	Mettl25 (MGP_PahariEiJ_G0031307) #28	Tmtc2 (MGP_PahariEiJ_G0031308) #29	Slc6a15 (MGP_PahariEiJ_G0031309) #32	MGP_PahariEiJ_G0031310	Alx1 (MGP_PahariEiJ_G0031311) #34	Rassf9 (MGP_PahariEiJ_G0031312) #35	Nts (MGP_PahariEiJ_G0031313) #36	Mgat4c (MGP_PahariEiJ_G0031314) #37	1700017N19Rik (MGP_PahariEiJ_G0031315)	4930430F08Rik (MGP_PahariEiJ_G0031316)
Rat	MODERN SPECIES	17	Phlda1 (ENSRNOG00000004019)	Nap1l1 (ENSRNOG00000003890)	Bbs10 (ENSRNOG00000026913)	ENSRNOG00000062798	Osbpl8 (ENSRNOG00000026962) #7	Zdhhc17 (ENSRNOG00000003803) #9	Csrp2 (ENSRNOG00000003772) #10	E2f7 (ENSRNOG00000026252) #11	Nav3 (ENSRNOG00000052157) #12	Brcc3dc (ENSRNOG00000070196)	Syt1 (ENSRNOG00000006426) #14	Pawr (ENSRNOG00000005917) #16	Ppp1r12a (ENSRNOG00000004925) #18	Otogl (ENSRNOG00000030316) #19	Ptprq (ENSRNOG00000056915) #20	Myf6 (ENSRNOG00000004878) #21	Myf5 (ENSRNOG00000004768) #22	Lin7a (ENSRNOG00000004527) #23	Acss3 (ENSRNOG00000004448) #25	Ppfia2 (ENSRNOG00000004353) #26	ENSRNOG00000063471	Ccdc59 (ENSRNOG00000004183) #27	Mettl25 (ENSRNOG00000027451) #28	Tmtc2 (ENSRNOG00000004585) #29	Slc6a15 (ENSRNOG00000027468) #32	Lrriq1 (ENSRNOG00000004564) #33	Alx1 (ENSRNOG00000004390) #34	Rassf9 (ENSRNOG00000038574) #35	Nts (ENSRNOG00000004179) #36	Mgat4c (ENSRNOG00000004149) #37	AABR07056845.1 (ENSRNOG00000023762)
Upper Galilee mountains blind mole rat	MODERN SPECIES	494	ENSNGAG00000022884	ENSNGAG00000014133	Bbs10 (ENSNGAG00000022298)	Osbpl8 (ENSNGAG00000014231) #7	Zdhhc17 (ENSNGAG00000009049) #9	ENSNGAG00000023257 #10	E2f7 (ENSNGAG00000023644) #11	ENSNGAG00000024182	Nav3 (ENSNGAG00000024210) #12	Syt1 (ENSNGAG00000020988) #14	Pawr (ENSNGAG00000015922) #16	Ppp1r12a (ENSNGAG00000023300) #18	ENSNGAG00000024231	Otogl (ENSNGAG00000022483) #19	Ptprq (ENSNGAG00000024172) #20	Myf6 (ENSNGAG00000023390) #21	Myf5 (ENSNGAG00000003539) #22	Lin7a (ENSNGAG00000022827) #23	Acss3 (ENSNGAG00000015078) #25	Ppfia2 (ENSNGAG00000022807) #26	ENSNGAG00000012599	Ccdc59 (ENSNGAG00000023637) #27	Mettl25 (ENSNGAG00000016246) #28	Tmtc2 (ENSNGAG00000023652) #29
Primates	ANCESTRAL SPECIES	6	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Strepsirrhini	ANCESTRAL SPECIES	3	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394.b #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Lemuriformes	ANCESTRAL SPECIES	1	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394.b #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Mouse lemur	MODERN SPECIES	29	NAP1L1 (ENSMICG00000006036)	BBS10 (ENSMICG00000042947)	OSBPL8 (ENSMICG00000000969) #7	ENSMICG00000029525	ZDHHC17 (ENSMICG00000033453) #9	CSRP2 (ENSMICG00000047076) #10	ENSMICG00000014368	E2F7 (ENSMICG00000013872) #11	NAV3 (ENSMICG00000003403) #12	SYT1 (ENSMICG00000015517) #14	PAWR (ENSMICG00000031649) #16	ENSMICG00000032513	PPP1R12A (ENSMICG00000032335) #18	OTOGL (ENSMICG00000026871) #19	PTPRQ (ENSMICG00000038737) #20	MYF6 (ENSMICG00000004274) #21	MYF5 (ENSMICG00000036139) #22	LIN7A (ENSMICG00000033894) #23	ACSS3 (ENSMICG00000010809) #25	PPFIA2 (ENSMICG00000010822) #26	CCDC59 (ENSMICG00000041747) #27	METTL25 (ENSMICG00000027175) #28	TMTC2 (ENSMICG00000031682) #29	SLC6A15 (ENSMICG00000026324) #32	TSPAN19 (ENSMICG00000038361)	LRRIQ1 (ENSMICG00000037929)	ALX1 (ENSMICG00000032710) #34	RASSF9 (ENSMICG00000042014) #35	NTS (ENSMICG00000037863) #36	MGAT4C (ENSMICG00000037297) #37	ENSMICG00000034439
Lemuriformes_a	ANCESTRAL SPECIES	190											ENSGT00940000155394.b #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Coquerels sifaka	MODERN SPECIES	654	APOO (ENSPCOG00000020962)	SAT1 (ENSPCOG00000022263)	ACOT9 (ENSPCOG00000017631)	PRDX4 (ENSPCOG00000021645)	PTCHD1 (ENSPCOG00000010244)	PHEX (ENSPCOG00000025455)	ENSPCOG00000017400	MBTPS2 (ENSPCOG00000008143)	SMPX (ENSPCOG00000025800)	CNKSR2 (ENSPCOG00000014884)	SYT1 (ENSPCOG00000025512) #14	PAWR (ENSPCOG00000018957) #16	PPP1R12A (ENSPCOG00000018987) #18	OTOGL (ENSPCOG00000027646) #19	PTPRQ (ENSPCOG00000012150) #20	MYF6 (ENSPCOG00000021756) #21	MYF5 (ENSPCOG00000012709) #22
Greater bamboo lemur	MODERN SPECIES	95							PANK3 (ENSPSMG00000017197)	ENSPSMG00000017175	CPEB4 (ENSPSMG00000017067)	ENSPSMG00000016953	SYT1 (ENSPSMG00000016943) #14	PAWR (ENSPSMG00000016915) #16	PPP1R12A (ENSPSMG00000016837) #18	OTOGL (ENSPSMG00000016582) #19	PTPRQ (ENSPSMG00000016269) #20	MYF6 (ENSPSMG00000016092) #21	MYF5 (ENSPSMG00000016083) #22	LIN7A (ENSPSMG00000016071) #23	ACSS3 (ENSPSMG00000016037) #25	PPFIA2 (ENSPSMG00000015931) #26	CCDC59 (ENSPSMG00000015532) #27	METTL25 (ENSPSMG00000015523) #28	TMTC2 (ENSPSMG00000015469) #29	SLC6A15 (ENSPSMG00000015347) #32	TSPAN19 (ENSPSMG00000015246)	LRRIQ1 (ENSPSMG00000015231)
Bushbaby	MODERN SPECIES	122	ENSOGAG00000010313	PHLDA1 (ENSOGAG00000010317)	NAP1L1 (ENSOGAG00000010319)	BBS10 (ENSOGAG00000025855)	OSBPL8 (ENSOGAG00000017084) #7	ZDHHC17 (ENSOGAG00000013994) #9	CSRP2 (ENSOGAG00000013999) #10	E2F7 (ENSOGAG00000010821) #11	ENSOGAG00000030290	NAV3 (ENSOGAG00000010604) #12	SYT1 (ENSOGAG00000009943) #14	PAWR (ENSOGAG00000027944) #16	PPP1R12A (ENSOGAG00000010740) #18	OTOGL (ENSOGAG00000030466) #19	PTPRQ (ENSOGAG00000025362) #20	MYF6 (ENSOGAG00000001038) #21	MYF5 (ENSOGAG00000001039) #22	LIN7A (ENSOGAG00000004616) #23	ACSS3 (ENSOGAG00000014813) #25	PPFIA2 (ENSOGAG00000014823) #26	ENSOGAG00000025088	CCDC59 (ENSOGAG00000004383) #27	METTL25 (ENSOGAG00000004384) #28	TMTC2 (ENSOGAG00000000477) #29	SLC6A15 (ENSOGAG00000014207) #32	LRRIQ1 (ENSOGAG00000014209)	ALX1 (ENSOGAG00000014211) #34	RASSF9 (ENSOGAG00000003208) #35	NTS (ENSOGAG00000003210) #36	MGAT4C (ENSOGAG00000003212) #37	ENSOGAG00000032440
Haplorrhini	ANCESTRAL SPECIES	3	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Tarsier	MODERN SPECIES	4455													OTOGL (ENSTSYG00000036620) #19	ENSTSYG00000026335	PTPRQ (ENSTSYG00000027505) #20	MYF6 (ENSTSYG00000003275) #21	MYF5 (ENSTSYG00000003282) #22	ENSTSYG00000010879 #23
Simiiformes	ANCESTRAL SPECIES	4	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Platyrrhini	ANCESTRAL SPECIES	6	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.u.a.a #10	ENSGT00940000154980.u.a.b #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00910000148286	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00390000014620.j	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Cebidae	ANCESTRAL SPECIES	2	ENSGT00440000039564.b	ENSGT00910000147072.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.u.a.a #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00390000014620.j	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Cebidae_a	ANCESTRAL SPECIES	8	ENSGT00910000147072.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980.u.a.a #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00550000074807.d	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00390000008708.o.a	ENSGT00940000157277 #32	ENSGT00390000014620.j	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36
Bolivian squirrel monkey	MODERN SPECIES	67	ENSSBOG00000034714	BBS10 (ENSSBOG00000022169)	OSBPL8 (ENSSBOG00000030671) #7	ZDHHC17 (ENSSBOG00000036173) #9	ENSSBOG00000014459 #10	E2F7 (ENSSBOG00000028674) #11	NAV3 (ENSSBOG00000036099) #12	ENSSBOG00000036163	ENSSBOG00000025849	SYT1 (ENSSBOG00000033271) #14	PAWR (ENSSBOG00000025731) #16	PPP1R12A (ENSSBOG00000033660) #18	ENSSBOG00000026289	OTOGL (ENSSBOG00000033681) #19	PTPRQ (ENSSBOG00000027538) #20	MYF6 (ENSSBOG00000021822) #21	MYF5 (ENSSBOG00000019536) #22	LIN7A (ENSSBOG00000030034) #23	ENSSBOG00000034028	ENSSBOG00000022040	ACSS3 (ENSSBOG00000018710) #25	PPFIA2 (ENSSBOG00000021244) #26	CCDC59 (ENSSBOG00000029711) #27	METTL25 (ENSSBOG00000025680) #28	ENSSBOG00000025592	TMTC2 (ENSSBOG00000024696) #29	ENSSBOG00000032046	ENSSBOG00000035574	SLC6A15 (ENSSBOG00000036273) #32	TSPAN19 (ENSSBOG00000018936)	LRRIQ1 (ENSSBOG00000024808)
Capuchin	MODERN SPECIES	156											PAWR (ENSCCAG00000026556) #16	PPP1R12A (ENSCCAG00000027422) #18	ENSCCAG00000033086	OTOGL (ENSCCAG00000019837) #19	PTPRQ (ENSCCAG00000033930) #20	MYF6 (ENSCCAG00000032873) #21	MYF5 (ENSCCAG00000029028) #22	LIN7A (ENSCCAG00000033374) #23	ACSS3 (ENSCCAG00000035103) #25	PPFIA2 (ENSCCAG00000029694) #26	CCDC59 (ENSCCAG00000021997) #27	METTL25 (ENSCCAG00000032764) #28	ENSCCAG00000034003	TMTC2 (ENSCCAG00000037661) #29	ENSCCAG00000032890
Marmoset	MODERN SPECIES	21	NAP1L1 (ENSCJAG00000001115)	ENSCJAG00000078161	BBS10 (ENSCJAG00000001113)	OSBPL8 (ENSCJAG00000001055) #7	ZDHHC17 (ENSCJAG00000019075) #9	ENSCJAG00000019153 #10	E2F7 (ENSCJAG00000019162) #11	NAV3 (ENSCJAG00000019176) #12	ENSCJAG00000078124	ENSCJAG00000078194	SYT1 (ENSCJAG00000019262) #14	PAWR (ENSCJAG00000019265) #16	PPP1R12A (ENSCJAG00000019271) #18	OTOGL (ENSCJAG00000019323) #19	PTPRQ (ENSCJAG00000019332) #20	MYF6 (ENSCJAG00000081789) #21	MYF5 (ENSCJAG00000019340) #22	LIN7A (ENSCJAG00000019343) #23	ACSS3 (ENSCJAG00000019352) #25	PPFIA2 (ENSCJAG00000019370) #26	CCDC59 (ENSCJAG00000019396) #27	METTL25 (ENSCJAG00000019400) #28	TMTC2 (ENSCJAG00000019420) #29	ENSCJAG00000073753	ENSCJAG00000081141	ENSCJAG00000086215	SLC6A15 (ENSCJAG00000019425) #32	TSPAN19 (ENSCJAG00000039345)	LRRIQ1 (ENSCJAG00000019445)	ALX1 (ENSCJAG00000080722) #34	ENSCJAG00000085601
Mas night monkey	MODERN SPECIES	833	ENSANAG00000023471	ENSANAG00000028981	ENSANAG00000021237 #10	E2F7 (ENSANAG00000036545) #11	ENSANAG00000032226	NAV3 (ENSANAG00000037686) #12	ENSANAG00000023582	ENSANAG00000023157	SYT1 (ENSANAG00000025826) #14	PAWR (ENSANAG00000022396) #16	PPP1R12A (ENSANAG00000034824) #18	ENSANAG00000019658	ENSANAG00000036662	OTOGL (ENSANAG00000024695) #19	PTPRQ (ENSANAG00000035871) #20	MYF6 (ENSANAG00000024892) #21	MYF5 (ENSANAG00000023208) #22	LIN7A (ENSANAG00000032889) #23	ACSS3 (ENSANAG00000034361) #25	PPFIA2 (ENSANAG00000023020) #26	CCDC59 (ENSANAG00000033505) #27	METTL25 (ENSANAG00000035794) #28	TMTC2 (ENSANAG00000036537) #29	ENSANAG00000022029	SLC6A15 (ENSANAG00000025270) #32	ENSANAG00000032039	TSPAN19 (ENSANAG00000013117)	LRRIQ1 (ENSANAG00000027300)	ALX1 (ENSANAG00000031059) #34	RASSF9 (ENSANAG00000030253) #35	NTS (ENSANAG00000030448) #36
Catarrhini	ANCESTRAL SPECIES	4	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Hominoidea	ANCESTRAL SPECIES	5	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00880000138028.b.b.b	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546.c #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Hominidae	ANCESTRAL SPECIES	4	ENSGT00910000147072	ENSGT00940000153362.a	ENSGT00880000138028.b.b.b	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546.c #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	5	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00880000138028.b.b.b	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546.c #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.a.b
Homo/Pan group	ANCESTRAL SPECIES	6	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00880000138028.b.b.b	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546.c #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.a.b
Pan	ANCESTRAL SPECIES	4	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00950000182922.a.a.a.b.a.b.a.b.b.a	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000154389.b.e	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546.c #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.a.b
Bonobo	MODERN SPECIES	3	BBS10 (ENSPPAG00000028532)	OSBPL8 (ENSPPAG00000043423) #7	ENSPPAG00000040481	ZDHHC17 (ENSPPAG00000030097) #9	ENSPPAG00000042089 #10	ENSPPAG00000042681	E2F7 (ENSPPAG00000002532) #11	NAV3 (ENSPPAG00000036134) #12	ENSPPAG00000015674	ENSPPAG00000028521	SYT1 (ENSPPAG00000029261) #14	PAWR (ENSPPAG00000043711) #16	PPP1R12A (ENSPPAG00000030740) #18	OTOGL (ENSPPAG00000014085) #19	PTPRQ (ENSPPAG00000000830) #20	MYF6 (ENSPPAG00000032290) #21	MYF5 (ENSPPAG00000028699) #22	LIN7A (ENSPPAG00000026771) #23	ACSS3 (ENSPPAG00000040977) #25	PPFIA2 (ENSPPAG00000033118) #26	CCDC59 (ENSPPAG00000030113) #27	METTL25 (ENSPPAG00000028130) #28	TMTC2 (ENSPPAG00000043706) #29	SLC6A15 (ENSPPAG00000043054) #32	TSPAN19 (ENSPPAG00000042222)	LRRIQ1 (ENSPPAG00000029539)	ALX1 (ENSPPAG00000034056) #34	RASSF9 (ENSPPAG00000019366) #35	NTS (ENSPPAG00000032540) #36	MGAT4C (ENSPPAG00000031798) #37	ENSPPAG00000020965
Chimpanzee	MODERN SPECIES	3	ENSPTRG00000048649	ZDHHC17 (ENSPTRG00000005243) #9	CSRP2 (ENSPTRG00000005244) #10	ENSPTRG00000051009	E2F7 (ENSPTRG00000005245) #11	NAV3 (ENSPTRG00000005247) #12	ENSPTRG00000046920	ENSPTRG00000044151	ENSPTRG00000050322	SYT1 (ENSPTRG00000024064) #14	PAWR (ENSPTRG00000005250) #16	PPP1R12A (ENSPTRG00000005252) #18	ENSPTRG00000045837	OTOGL (ENSPTRG00000005257) #19	PTPRQ (ENSPTRG00000039205) #20	MYF6 (ENSPTRG00000005260) #21	MYF5 (ENSPTRG00000005261) #22	LIN7A (ENSPTRG00000005262) #23	ACSS3 (ENSPTRG00000005263) #25	PPFIA2 (ENSPTRG00000005265) #26	CCDC59 (ENSPTRG00000005266) #27	METTL25 (ENSPTRG00000005267) #28	TMTC2 (ENSPTRG00000005268) #29	SLC6A15 (ENSPTRG00000005269) #32	TSPAN19 (ENSPTRG00000040421)	LRRIQ1 (ENSPTRG00000005271)	ALX1 (ENSPTRG00000005272) #34	RASSF9 (ENSPTRG00000005273) #35	NTS (ENSPTRG00000005274) #36	MGAT4C (ENSPTRG00000045901) #37	ENSPTRG00000044899
Human	MODERN SPECIES	3	GLIPR1 (ENSG00000139278)	KRR1 (ENSG00000111615)	PHLDA1 (ENSG00000139289)	NAP1L1 (ENSG00000187109)	BBS10 (ENSG00000179941)	OSBPL8 (ENSG00000091039) #7	ZDHHC17 (ENSG00000186908) #9	CSRP2 (ENSG00000175183) #10	E2F7 (ENSG00000165891) #11	NAV3 (ENSG00000067798) #12	SYT1 (ENSG00000067715) #14	PAWR (ENSG00000177425) #16	PPP1R12A (ENSG00000058272) #18	OTOGL (ENSG00000165899) #19	PTPRQ (ENSG00000139304) #20	MYF6 (ENSG00000111046) #21	MYF5 (ENSG00000111049) #22	LIN7A (ENSG00000111052) #23	ACSS3 (ENSG00000111058) #25	PPFIA2 (ENSG00000139220) #26	CCDC59 (ENSG00000133773) #27	METTL25 (ENSG00000127720) #28	TMTC2 (ENSG00000179104) #29	SLC6A15 (ENSG00000072041) #32	TSPAN19 (ENSG00000231738)	LRRIQ1 (ENSG00000133640)	ALX1 (ENSG00000180318) #34	RASSF9 (ENSG00000198774) #35	NTS (ENSG00000133636) #36	MGAT4C (ENSG00000182050) #37	C12orf50 (ENSG00000165805)
Gorilla	MODERN SPECIES	3	ENSGGOG00000023867	ZDHHC17 (ENSGGOG00000023287) #9	ENSGGOG00000039704 #10	ENSGGOG00000041578 #10	ENSGGOG00000038839	E2F7 (ENSGGOG00000012645) #11	NAV3 (ENSGGOG00000006574) #12	ENSGGOG00000002908	SYT1 (ENSGGOG00000024224) #14	ENSGGOG00000022534	PAWR (ENSGGOG00000010093) #16	PPP1R12A (ENSGGOG00000014574) #18	ENSGGOG00000025286	ENSGGOG00000015088 #19	PTPRQ (ENSGGOG00000011494) #20	MYF6 (ENSGGOG00000004369) #21	MYF5 (ENSGGOG00000004366) #22	LIN7A (ENSGGOG00000038053) #23	ACSS3 (ENSGGOG00000010105) #25	PPFIA2 (ENSGGOG00000026460) #26	CCDC59 (ENSGGOG00000025296) #27	METTL25 (ENSGGOG00000023239) #28	TMTC2 (ENSGGOG00000028180) #29	ENSGGOG00000025311	SLC6A15 (ENSGGOG00000010440) #32	TSPAN19 (ENSGGOG00000022316)	LRRIQ1 (ENSGGOG00000010081)	ALX1 (ENSGGOG00000000168) #34	RASSF9 (ENSGGOG00000028426) #35	NTS (ENSGGOG00000010239) #36	MGAT4C (ENSGGOG00000015293) #37
Orangutan	MODERN SPECIES	3	ENSPPYG00000032561	BBS10 (ENSPPYG00000004787)	ENSPPYG00000037353	OSBPL8 (ENSPPYG00000004788) #7	ZDHHC17 (ENSPPYG00000004789) #9	ENSPPYG00000031243 #10	E2F7 (ENSPPYG00000004791) #11	NAV3 (ENSPPYG00000004792) #12	ENSPPYG00000004793	SYT1 (ENSPPYG00000004794) #14	PAWR (ENSPPYG00000004795) #16	ENSPPYG00000025853	PPP1R12A (ENSPPYG00000004796) #18	OTOGL (ENSPPYG00000004797) #19	PTPRQ (ENSPPYG00000041069) #20	MYF6 (ENSPPYG00000004799) #21	MYF5 (ENSPPYG00000004800) #22	LIN7A (ENSPPYG00000039262) #23	ACSS3 (ENSPPYG00000004802) #25	PPFIA2 (ENSPPYG00000004803) #26	CCDC59 (ENSPPYG00000004804) #27	METTL25 (ENSPPYG00000004805) #28	TMTC2 (ENSPPYG00000004806) #29	SLC6A15 (ENSPPYG00000004807) #32	TSPAN19 (ENSPPYG00000038266)	LRRIQ1 (ENSPPYG00000004808)	RASSF9 (ENSPPYG00000033145) #35	NTS (ENSPPYG00000004810) #36	MGAT4C (ENSPPYG00000004811) #37	C12orf50 (ENSPPYG00000004812)	C12H12orf29 (ENSPPYG00000004813)
Gibbon	MODERN SPECIES		ENSNLEG00000004680	NAP1L1 (ENSNLEG00000004682)	ENSNLEG00000031630	BBS10 (ENSNLEG00000004748)	OSBPL8 (ENSNLEG00000004750) #7	ZDHHC17 (ENSNLEG00000004841) #9	ENSNLEG00000004885 #10	ENSNLEG00000028737	E2F7 (ENSNLEG00000004897) #11	NAV3 (ENSNLEG00000004917) #12	SYT1 (ENSNLEG00000004995) #14	PAWR (ENSNLEG00000005035) #16	PPP1R12A (ENSNLEG00000005041) #18	OTOGL (ENSNLEG00000005115) #19	PTPRQ (ENSNLEG00000005154) #20	MYF6 (ENSNLEG00000032583) #21	MYF5 (ENSNLEG00000005207) #22	LIN7A (ENSNLEG00000032491) #23	ACSS3 (ENSNLEG00000005227) #25	PPFIA2 (ENSNLEG00000005251) #26	CCDC59 (ENSNLEG00000033968) #27	METTL25 (ENSNLEG00000005299) #28	TMTC2 (ENSNLEG00000005311) #29	SLC6A15 (ENSNLEG00000005336) #32	LRRIQ1 (ENSNLEG00000005358)	ALX1 (ENSNLEG00000005381) #34	RASSF9 (ENSNLEG00000005386) #35	NTS (ENSNLEG00000005388) #36	MGAT4C (ENSNLEG00000005393) #37	C12orf50 (ENSNLEG00000005395)	C12orf29 (ENSNLEG00000005396)
Cercopithecidae	ANCESTRAL SPECIES	3	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Cercopithecinae	ANCESTRAL SPECIES	7	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Cercopithecinae_a	ANCESTRAL SPECIES	7	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT01050000244986.b.b.d.a.a.b	ENSGT00390000009168.hb	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00940000153524.b.a.a.k.a	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Cercopithecinae_b	ANCESTRAL SPECIES	2	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00390000009168.hb	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000014818.g.b.a.a.a.b.b	ENSGT00940000153294.m.b.s.f	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00940000153524.b.a.a.k.a
Olive baboon	MODERN SPECIES	19	ENSPANG00000028903	ZDHHC17 (ENSPANG00000004050) #9	CSRP2 (ENSPANG00000023047) #10	E2F7 (ENSPANG00000004929) #11	NAV3 (ENSPANG00000007911) #12	ENSPANG00000043139	ENSPANG00000015985	ENSPANG00000040020	SYT1 (ENSPANG00000009048) #14	PAWR (ENSPANG00000009557) #16	PPP1R12A (ENSPANG00000026354) #18	ENSPANG00000047805	OTOGL (ENSPANG00000012907) #19	PTPRQ (ENSPANG00000014456) #20	ENSPANG00000005319	MYF6 (ENSPANG00000044306) #21	MYF5 (ENSPANG00000020394) #22	LIN7A (ENSPANG00000005931) #23	ACSS3 (ENSPANG00000019084) #25	PPFIA2 (ENSPANG00000019704) #26	ENSPANG00000035488	ENSPANG00000042647	ENSPANG00000049322	CCDC59 (ENSPANG00000023011) #27	METTL25 (ENSPANG00000033969) #28	ENSPANG00000032275	TMTC2 (ENSPANG00000008622) #29	ENSPANG00000049628	ENSPANG00000005733	SLC6A15 (ENSPANG00000011238) #32	LRRIQ1 (ENSPANG00000020393)
Cercopithecinae_d	ANCESTRAL SPECIES	3	ENSGT00940000156622 #7	ENSGT00390000009168.hb	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000263748	ENSGT00940000163914.c.a	ENSGT00390000003133.i.a	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000014818.g.b.a.a.a.b.a	ENSGT00940000153294.m.b.s.f	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00940000153524.b.a.a.k.a
Sooty mangabey	MODERN SPECIES	582	ENSCATG00000005498	ENSCATG00000039522	ENSCATG00000044128	ZDHHC17 (ENSCATG00000040479) #9	CSRP2 (ENSCATG00000040566) #10	E2F7 (ENSCATG00000035481) #11	NAV3 (ENSCATG00000032040) #12	ENSCATG00000017337	ENSCATG00000040529	ENSCATG00000044466	SYT1 (ENSCATG00000033541) #14	PAWR (ENSCATG00000034935) #16	PPP1R12A (ENSCATG00000038278) #18	OTOGL (ENSCATG00000038125) #19	PTPRQ (ENSCATG00000039610) #20	MYF6 (ENSCATG00000029151) #21	MYF5 (ENSCATG00000042162) #22	LIN7A (ENSCATG00000029939) #23	ACSS3 (ENSCATG00000030914) #25	PPFIA2 (ENSCATG00000040747) #26	ENSCATG00000038856	ENSCATG00000031323	ENSCATG00000034351	CCDC59 (ENSCATG00000044760) #27	METTL25 (ENSCATG00000044852) #28	TMTC2 (ENSCATG00000040764) #29	ENSCATG00000022828	SLC6A15 (ENSCATG00000041025) #32	TSPAN19 (ENSCATG00000034141)	LRRIQ1 (ENSCATG00000037866)	ALX1 (ENSCATG00000041762) #34
Drill	MODERN SPECIES	1141														OTOGL (ENSMLEG00000040646) #19	PTPRQ (ENSMLEG00000039303) #20	MYF6 (ENSMLEG00000034432) #21	MYF5 (ENSMLEG00000038211) #22	LIN7A (ENSMLEG00000020249) #23	ACSS3 (ENSMLEG00000042153) #25	ENSMLEG00000000975	PPFIA2 (ENSMLEG00000042213) #26
Macaca	ANCESTRAL SPECIES	6	ENSGT00960000192410	ENSGT00940000156622 #7	ENSGT01050000244986.b.b.d.a.a.b	ENSGT00390000009168.hb	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00950000183030.m.a.a.b.b.a.b.a	ENSGT00910000147454	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00940000153524.b.a.a.k.a	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Macaca_a	ANCESTRAL SPECIES	6	ENSGT01050000244986.b.b.d.a.a.b.a	ENSGT01030000234542.b.a.a.a.b.a.a.a.b.a.a	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT01050000245239.a.a	ENSGT00940000161627.a.a.a.a.b.a.a.a.b.c.a.a.a.b	ENSGT00940000158014 #12	ENSGT00950000183030.m.a.a.b.b.a.b.a	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.b.a.a.b.a.b.c.b	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000153052.c.b.a.a.a.a.b.b.b	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37
Rhesus	MODERN SPECIES	2	ENSMMUG00000052719	E2F7 (ENSMMUG00000022846) #11	ENSMMUG00000059985	ENSMMUG00000055171	ENSMMUG00000060140	NAV3 (ENSMMUG00000021329) #12	ENSMMUG00000058640	ENSMMUG00000051304	ENSMMUG00000060137	SYT1 (ENSMMUG00000005530) #14	PAWR (ENSMMUG00000015179) #16	ENSMMUG00000053591	PPP1R12A (ENSMMUG00000019214) #18	OTOGL (ENSMMUG00000000121) #19	PTPRQ (ENSMMUG00000037711) #20	MYF6 (ENSMMUG00000011667) #21	MYF5 (ENSMMUG00000011669) #22	LIN7A (ENSMMUG00000011671) #23	ENSMMUG00000017463	ACSS3 (ENSMMUG00000013800) #25	ENSMMUG00000046323	PPFIA2 (ENSMMUG00000013804) #26	ENSMMUG00000050266	CCDC59 (ENSMMUG00000063005) #27	METTL25 (ENSMMUG00000002514) #28	ENSMMUG00000059068	TMTC2 (ENSMMUG00000011305) #29	ENSMMUG00000043159	ENSMMUG00000058294	SLC6A15 (ENSMMUG00000013650) #32	TSPAN19 (ENSMMUG00000042255)
Crab-eating macaque	MODERN SPECIES	2	ENSMFAG00000059233	NAV3 (ENSMFAG00000044289) #12	ENSMFAG00000034925	ENSMFAG00000034379	ENSMFAG00000000157	SYT1 (ENSMFAG00000003495) #14	ENSMFAG00000050054	PAWR (ENSMFAG00000062333) #16	ENSMFAG00000063729	ENSMFAG00000049694	PPP1R12A (ENSMFAG00000034239) #18	OTOGL (ENSMFAG00000031786) #19	PTPRQ (ENSMFAG00000044210) #20	ENSMFAG00000052094	ENSMFAG00000058049	MYF6 (ENSMFAG00000033881) #21	MYF5 (ENSMFAG00000042044) #22	LIN7A (ENSMFAG00000040160) #23	ENSMFAG00000031214	ACSS3 (ENSMFAG00000040344) #25	PPFIA2 (ENSMFAG00000031204) #26	ENSMFAG00000049838	CCDC59 (ENSMFAG00000034303) #27	METTL25 (ENSMFAG00000036420) #28	ENSMFAG00000051090	ENSMFAG00000052001	TMTC2 (ENSMFAG00000038030) #29	ENSMFAG00000053756	ENSMFAG00000051138	ENSMFAG00000060580	ENSMFAG00000047713
Pig-tailed macaque	MODERN SPECIES	517	CSRP2 (ENSMNEG00000030922) #10	E2F7 (ENSMNEG00000025875) #11	NAV3 (ENSMNEG00000043424) #12	ENSMNEG00000000985	ENSMNEG00000009689	ENSMNEG00000026858	ENSMNEG00000028899	ENSMNEG00000037055	ENSMNEG00000038165	ENSMNEG00000031657	SYT1 (ENSMNEG00000030551) #14	PAWR (ENSMNEG00000004020) #16	PPP1R12A (ENSMNEG00000033679) #18	OTOGL (ENSMNEG00000034772) #19	PTPRQ (ENSMNEG00000045562) #20	MYF6 (ENSMNEG00000019739) #21	MYF5 (ENSMNEG00000039510) #22	LIN7A (ENSMNEG00000040769) #23	ACSS3 (ENSMNEG00000030423) #25	ENSMNEG00000021297	PPFIA2 (ENSMNEG00000041825) #26	CCDC59 (ENSMNEG00000037462) #27	METTL25 (ENSMNEG00000042500) #28	TMTC2 (ENSMNEG00000028808) #29	ENSMNEG00000032829	SLC6A15 (ENSMNEG00000005563) #32	TSPAN19 (ENSMNEG00000036225)	LRRIQ1 (ENSMNEG00000037379)	ALX1 (ENSMNEG00000034993) #34	ENSMNEG00000000984	RASSF9 (ENSMNEG00000033486) #35
Vervet Monkey	MODERN SPECIES	2	ENSCSAG00000018909	NAP1L1 (ENSCSAG00000004030)	BBS10 (ENSCSAG00000004028)	OSBPL8 (ENSCSAG00000004024) #7	ZDHHC17 (ENSCSAG00000004014) #9	CSRP2 (ENSCSAG00000004009) #10	E2F7 (ENSCSAG00000003998) #11	ENSCSAG00000003979 #12	ENSCSAG00000018912	ENSCSAG00000018914	SYT1 (ENSCSAG00000003971) #14	PAWR (ENSCSAG00000003962) #16	PPP1R12A (ENSCSAG00000003956) #18	OTOGL (ENSCSAG00000003939) #19	PTPRQ (ENSCSAG00000003913) #20	MYF6 (ENSCSAG00000003893) #21	MYF5 (ENSCSAG00000003889) #22	LIN7A (ENSCSAG00000003887) #23	ACSS3 (ENSCSAG00000003882) #25	PPFIA2 (ENSCSAG00000003876) #26	ENSCSAG00000003868 #26	CCDC59 (ENSCSAG00000003867) #27	METTL25 (ENSCSAG00000003863) #28	ENSCSAG00000018917	TMTC2 (ENSCSAG00000003860) #29	ENSCSAG00000018919	ENSCSAG00000018921	ENSCSAG00000018923	SLC6A15 (ENSCSAG00000003858) #32	TSPAN19 (ENSCSAG00000003855)	LRRIQ1 (ENSCSAG00000003850)
Rhinopithecus	ANCESTRAL SPECIES	603														ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26
Black snub-nosed monkey	MODERN SPECIES	485															PTPRQ (ENSRBIG00000036416) #20	MYF6 (ENSRBIG00000034023) #21	MYF5 (ENSRBIG00000011474) #22
Golden snub-nosed monkey	MODERN SPECIES	2447														OTOGL (ENSRROG00000003053) #19	PTPRQ (ENSRROG00000040104) #20	MYF6 (ENSRROG00000040631) #21	MYF5 (ENSRROG00000040728) #22	LIN7A (ENSRROG00000035008) #23	ACSS3 (ENSRROG00000030884) #25	PPFIA2 (ENSRROG00000012213) #26
Sauria	ANCESTRAL SPECIES	4	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Lepidosauria	ANCESTRAL SPECIES	3	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
tuatara	MODERN SPECIES	1779	ENSSPUG00000007507	PHLDA1 (ENSSPUG00000007502)	NAP1L1 (ENSSPUG00000007452)	BBS10 (ENSSPUG00000007433)	OSBPL8 (ENSSPUG00000007161) #7	ZDHHC17 (ENSSPUG00000007115) #9	CSRP2 (ENSSPUG00000007078) #10	E2F7 (ENSSPUG00000007017) #11	NAV3 (ENSSPUG00000006945) #12	SYT1 (ENSSPUG00000006892) #14	PAWR (ENSSPUG00000006881) #16	PPP1R12A (ENSSPUG00000006848) #18	RPS16 (ENSSPUG00000006832)	OTOGL (ENSSPUG00000006721) #19	PTPRQ (ENSSPUG00000006635) #20	MYF6 (ENSSPUG00000006611) #21	ENSSPUG00000006578 #23	ENSSPUG00000006572 #23	ACSS3 (ENSSPUG00000006460) #25	PPFIA2 (ENSSPUG00000006051) #26
Episquamata	ANCESTRAL SPECIES	3	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Toxicofera	ANCESTRAL SPECIES	7	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Elapidae	ANCESTRAL SPECIES	6	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.f.a #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277.k #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Elapidae_a	ANCESTRAL SPECIES	1	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.f.a #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277.k #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Acanthophiinae	ANCESTRAL SPECIES		ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b.f.a #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277.k #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Eastern brown snake	MODERN SPECIES		PHLDA1 (ENSPTXG00000007382)	NAP1L1 (ENSPTXG00000007381)	ENSPTXG00000007380	OSBPL8 (ENSPTXG00000007376) #7	ZDHHC17 (ENSPTXG00000007375) #9	CSRP2 (ENSPTXG00000007374) #10	E2F7 (ENSPTXG00000007372) #11	NAV3 (ENSPTXG00000007360) #12	SYT1 (ENSPTXG00000007357) #14	PAWR (ENSPTXG00000007356) #16	PPP1R12A (ENSPTXG00000007355) #18	RPS16 (ENSPTXG00000007353)	OTOGL (ENSPTXG00000007346) #19	ENSPTXG00000007343	PTPRQ (ENSPTXG00000007341) #20	MYF6 (ENSPTXG00000007339) #21	MYF5 (ENSPTXG00000007338) #22	LIN7A (ENSPTXG00000007335) #23	ACSS3 (ENSPTXG00000007330) #25	PPFIA2 (ENSPTXG00000007321) #26	CCDC59 (ENSPTXG00000007319) #27	METTL25 (ENSPTXG00000007317) #28	TMTC2 (ENSPTXG00000007315) #29	ENSPTXG00000007314 #32	ENSPTXG00000007312 #32	ENSPTXG00000007310 #33	ALX1 (ENSPTXG00000007309) #34	RASSF9 (ENSPTXG00000007307) #35	NTS (ENSPTXG00000007306) #36	MGAT4C (ENSPTXG00000007305) #37	C12orf50 (ENSPTXG00000007304)
Mainland tiger snake	MODERN SPECIES	20	NAP1L1 (ENSNSUG00000001802)	ENSNSUG00000001793	ZDHHC17 (ENSNSUG00000001783) #9	CSRP2 (ENSNSUG00000001781) #10	E2F7 (ENSNSUG00000001756) #11	ENSNSUG00000001751	NAV3 (ENSNSUG00000001737) #12	SYT1 (ENSNSUG00000001720) #14	PAWR (ENSNSUG00000001717) #16	PPP1R12A (ENSNSUG00000000977) #18	ENSNSUG00000000970	ENSNSUG00000000966	OTOGL (ENSNSUG00000000909) #19	ENSNSUG00000000905	PTPRQ (ENSNSUG00000000888) #20	MYF6 (ENSNSUG00000000885) #21	MYF5 (ENSNSUG00000000881) #22	LIN7A (ENSNSUG00000000879) #23	ACSS3 (ENSNSUG00000000722) #25	PPFIA2 (ENSNSUG00000000679) #26	CCDC59 (ENSNSUG00000000657) #27	METTL25 (ENSNSUG00000000356) #28	TMTC2 (ENSNSUG00000000314) #29	ENSNSUG00000000296 #32	ENSNSUG00000000286 #32	ENSNSUG00000000256 #33	ALX1 (ENSNSUG00000000235) #34	RASSF9 (ENSNSUG00000000215) #35	NTS (ENSNSUG00000000030) #36	MGAT4C (ENSNSUG00000000019) #37
Blue-lipped sea krait	MODERN SPECIES	6278																MYF6 (ENSLLTG00000009704) #21	MYF5 (ENSLLTG00000009715) #22
Indian cobra	MODERN SPECIES	6	ENSNNAG00000006093	PHLDA1 (ENSNNAG00000006109)	NAP1L1 (ENSNNAG00000006156)	OSBPL8 (ENSNNAG00000006212) #7	ZDHHC17 (ENSNNAG00000006609) #9	CSRP2 (ENSNNAG00000006626) #10	E2F7 (ENSNNAG00000006676) #11	NAV3 (ENSNNAG00000007065) #12	SYT1 (ENSNNAG00000007300) #14	PAWR (ENSNNAG00000007341) #16	PPP1R12A (ENSNNAG00000007491) #18	RPS16 (ENSNNAG00000010459)	OTOGL (ENSNNAG00000010528) #19	ENSNNAG00000011195	PTPRQ (ENSNNAG00000011257) #20	MYF6 (ENSNNAG00000011423) #21	MYF5 (ENSNNAG00000011436) #22	LIN7A (ENSNNAG00000011463) #23	ACSS3 (ENSNNAG00000011558) #25	PPFIA2 (ENSNNAG00000011658) #26	CCDC59 (ENSNNAG00000012004) #27	METTL25 (ENSNNAG00000012065) #28	TMTC2 (ENSNNAG00000012643) #29	SLC6A15 (ENSNNAG00000012726) #32	ENSNNAG00000012826 #33	ALX1 (ENSNNAG00000012891) #34	RASSF9 (ENSNNAG00000012912) #35	NTS (ENSNNAG00000012925) #36	MGAT4C (ENSNNAG00000012939) #37	C12orf50 (ENSNNAG00000012961)	C12orf29 (ENSNNAG00000012986)
Lizard	MODERN SPECIES	4	ZFC3H1 (ENSACAG00000007327)	LGR5 (ENSACAG00000007193)	TSPAN8 (ENSACAG00000007164)	PTPRR (ENSACAG00000021144)	PTPRB (ENSACAG00000001460)	ENSACAG00000045283	ENSACAG00000045240	SYT1 (ENSACAG00000013826) #14	ENSACAG00000039009	PAWR (ENSACAG00000038363) #16	PPP1R12A (ENSACAG00000014016) #18	ENSACAG00000042872	ENSACAG00000014176	OTOGL (ENSACAG00000014205) #19	PTPRQ (ENSACAG00000014272) #20	MYF6 (ENSACAG00000042468) #21	MYF5 (ENSACAG00000014431) #22	LIN7A (ENSACAG00000014452) #23	ACSS3 (ENSACAG00000014473) #25	ENSACAG00000039448	PPFIA2 (ENSACAG00000014550) #26	ENSACAG00000014707	METTL25 (ENSACAG00000014713) #28	ENSACAG00000044939	ENSACAG00000034859	TMTC2 (ENSACAG00000014731) #29	ENSACAG00000042686	ENSACAG00000005259	SLC6A15 (ENSACAG00000010944) #32	ENSACAG00000011087 #33	ALX1 (ENSACAG00000011108) #34
Laterata	ANCESTRAL SPECIES	6	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT01040000241648	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Argentine black and white tegu	MODERN SPECIES	6	PHLDA1 (ENSSMRG00000001842)	NAP1L1 (ENSSMRG00000001927)	OSBPL8 (ENSSMRG00000002083) #7	ZDHHC17 (ENSSMRG00000002140) #9	CSRP2 (ENSSMRG00000002146) #10	E2F7 (ENSSMRG00000002156) #11	NAV3 (ENSSMRG00000002199) #12	SYT1 (ENSSMRG00000010234) #14	PAWR (ENSSMRG00000010238) #16	PPP1R12A (ENSSMRG00000010257) #18	RPS16 (ENSSMRG00000010263)	OTOGL (ENSSMRG00000010267) #19	ENSSMRG00000010274	ENSSMRG00000010275	PTPRQ (ENSSMRG00000010276) #20	MYF6 (ENSSMRG00000010285) #21	MYF5 (ENSSMRG00000010286) #22	LIN7A (ENSSMRG00000010290) #23	ACSS3 (ENSSMRG00000010292) #25	PPFIA2 (ENSSMRG00000010302) #26	ENSSMRG00000010304	METTL25 (ENSSMRG00000010319) #28	TMTC2 (ENSSMRG00000010414) #29	SLC6A15 (ENSSMRG00000010425) #32	ENSSMRG00000010470 #33	ENSSMRG00000010489	ALX1 (ENSSMRG00000010491) #34	RASSF9 (ENSSMRG00000010505) #35	NTS (ENSSMRG00000010506) #36	MGAT4C (ENSSMRG00000010507) #37	C12orf50 (ENSSMRG00000010526)
Common wall lizard	MODERN SPECIES	1	NAP1L1 (ENSPMRG00000018484)	OSBPL8 (ENSPMRG00000018504) #7	ZDHHC17 (ENSPMRG00000018520) #9	ENSPMRG00000018530	CSRP2 (ENSPMRG00000018535) #10	E2F7 (ENSPMRG00000018546) #11	NAV3 (ENSPMRG00000018638) #12	SYT1 (ENSPMRG00000018726) #14	PAWR (ENSPMRG00000018731) #16	PPP1R12A (ENSPMRG00000018742) #18	ENSPMRG00000018764	ENSPMRG00000018768	OTOGL (ENSPMRG00000018808) #19	ENSPMRG00000019031	PTPRQ (ENSPMRG00000019053) #20	MYF6 (ENSPMRG00000019140) #21	MYF5 (ENSPMRG00000019143) #22	LIN7A (ENSPMRG00000019147) #23	ACSS3 (ENSPMRG00000019167) #25	PPFIA2 (ENSPMRG00000019499) #26	ENSPMRG00000021433	CCDC59 (ENSPMRG00000021438) #27	METTL25 (ENSPMRG00000021455) #28	ENSPMRG00000021479	TMTC2 (ENSPMRG00000021488) #29	ENSPMRG00000021497	SLC6A15 (ENSPMRG00000021501) #32	ENSPMRG00000021518 #33	ALX1 (ENSPMRG00000021545) #34	RASSF9 (ENSPMRG00000021551) #35	NTS (ENSPMRG00000009086) #36
Archelosauria	ANCESTRAL SPECIES	3	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Cryptodira	ANCESTRAL SPECIES	11	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Testudinoidea	ANCESTRAL SPECIES	4	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713.u #11	ENSGT00940000157713.v #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Testudinidae	ANCESTRAL SPECIES	12	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713.u #11	ENSGT00940000157713.v #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Goode s thornscrub tortoise	MODERN SPECIES		PHLDA1 (ENSGEVG00005000018)	NAP1L1 (ENSGEVG00005000012)	BBS10 (ENSGEVG00005008898)	OSBPL8 (ENSGEVG00005008789) #7	ZDHHC17 (ENSGEVG00005008730) #9	CSRP2 (ENSGEVG00005008707) #10	ENSGEVG00005008668 #11	ENSGEVG00005008646 #11	NAV3 (ENSGEVG00005008397) #12	SYT1 (ENSGEVG00005008297) #14	PAWR (ENSGEVG00005008262) #16	PPP1R12A (ENSGEVG00005008199) #18	RPS16 (ENSGEVG00005008158)	OTOGL (ENSGEVG00005007663) #19	PTPRQ (ENSGEVG00005007409) #20	MYF6 (ENSGEVG00005007365) #21	MYF5 (ENSGEVG00005007350) #22	LIN7A (ENSGEVG00005007306) #23	ACSS3 (ENSGEVG00005007236) #25	PPFIA2 (ENSGEVG00005007013) #26	CCDC59 (ENSGEVG00005006965) #27	METTL25 (ENSGEVG00005006938) #28	TMTC2 (ENSGEVG00005006853) #29	ENSGEVG00005006829	ENSGEVG00005006780 #32	ENSGEVG00005006758 #32	ENSGEVG00005006696 #33	ALX1 (ENSGEVG00005006662) #34	RASSF9 (ENSGEVG00005006645) #35	NTS (ENSGEVG00005006613) #36	MGAT4C (ENSGEVG00005006595) #37
Abingdon island giant tortoise	MODERN SPECIES	2351				ENSCABG00000020097	ENSCABG00000020235	ENSCABG00000020236	ENSCABG00000020237	KLF8 (ENSCABG00000020238)	ENSCABG00000020239	ENSCABG00000020241	ENSCABG00000020242	ENSCABG00000020244	OTOGL (ENSCABG00000020245) #19	ENSCABG00000020248	PTPRQ (ENSCABG00000020251) #20	MYF6 (ENSCABG00000020254) #21	MYF5 (ENSCABG00000020256) #22
Emydidae	ANCESTRAL SPECIES	10	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713.u #11	ENSGT00940000157713.v #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00950000182956.b.b.a.a.c.a.l
painted turtle	MODERN SPECIES		PPME1 (ENSCPBG00000000050)	P4HA3 (ENSCPBG00000000051)	ENSCPBG00000000052	ENSCPBG00000000053	SPCS2 (ENSCPBG00000000054)	XRRA1 (ENSCPBG00000000055)	RNF169 (ENSCPBG00000000056)	SYT1 (ENSCPBG00000000057) #14	ENSCPBG00000000058	PAWR (ENSCPBG00000000059) #16	PPP1R12A (ENSCPBG00000000060) #18	RPS16 (ENSCPBG00000000062)	OTOGL (ENSCPBG00000000063) #19	ENSCPBG00000000065	PTPRQ (ENSCPBG00000000067) #20	MYF6 (ENSCPBG00000000068) #21	MYF5 (ENSCPBG00000000069) #22	LIN7A (ENSCPBG00000000070) #23	ACSS3 (ENSCPBG00000000071) #25	ENSCPBG00000000072	PPFIA2 (ENSCPBG00000000073) #26	CCDC59 (ENSCPBG00000000075) #27	METTL25 (ENSCPBG00000000076) #28	TMTC2 (ENSCPBG00000000077) #29	SLC6A15 (ENSCPBG00000000079) #32	TSPAN19 (ENSCPBG00000000080)	ENSCPBG00000000081 #33	ENSCPBG00000000082	ALX1 (ENSCPBG00000000083) #34	RASSF9 (ENSCPBG00000000084) #35	NTS (ENSCPBG00000000085) #36
Three-toed box turtle	MODERN SPECIES	28	PHLDA1 (ENSTMTG00000017953)	NAP1L1 (ENSTMTG00000017966)	BBS10 (ENSTMTG00000017983)	OSBPL8 (ENSTMTG00000018028) #7	ZDHHC17 (ENSTMTG00000018059) #9	CSRP2 (ENSTMTG00000018107) #10	ENSTMTG00000018112 #11	ENSTMTG00000018124 #11	NAV3 (ENSTMTG00000018146) #12	SYT1 (ENSTMTG00000018366) #14	PAWR (ENSTMTG00000018399) #16	PPP1R12A (ENSTMTG00000018415) #18	RPS16 (ENSTMTG00000018474)	OTOGL (ENSTMTG00000018509) #19	PTPRQ (ENSTMTG00000018868) #20	MYF6 (ENSTMTG00000018967) #21	MYF5 (ENSTMTG00000000077) #22	ENSTMTG00000000099 #23	LIN7A (ENSTMTG00000000157) #23	ACSS3 (ENSTMTG00000000183) #25	ENSTMTG00000000244 #26	ENSTMTG00000000306 #26	CCDC59 (ENSTMTG00000000341) #27	METTL25 (ENSTMTG00000000386) #28	TMTC2 (ENSTMTG00000000433) #29	SLC6A15 (ENSTMTG00000000460) #32	ENSTMTG00000000487	TSPAN19 (ENSTMTG00000000501)	ENSTMTG00000000530 #33	ALX1 (ENSTMTG00000000570) #34	RASSF9 (ENSTMTG00000000576) #35
Chinese turtle	MODERN SPECIES	718				ENSPSIG00000001298	ZDHHC17 (ENSPSIG00000012905) #9	CSRP2 (ENSPSIG00000012637) #10	E2F7 (ENSPSIG00000012629) #11	NAV3 (ENSPSIG00000009060) #12	SYT1 (ENSPSIG00000007501) #14	PAWR (ENSPSIG00000007487) #16	PPP1R12A (ENSPSIG00000017200) #18	ENSPSIG00000016930	ENSPSIG00000016823	OTOGL (ENSPSIG00000014034) #19	ENSPSIG00000013550	MYF6 (ENSPSIG00000012468) #21	MYF5 (ENSPSIG00000012000) #22	LIN7A (ENSPSIG00000011871) #23	ACSS3 (ENSPSIG00000009322) #25	PPFIA2 (ENSPSIG00000007454) #26	METTL25 (ENSPSIG00000007019) #28	TMTC2 (ENSPSIG00000006034) #29
Archosauria	ANCESTRAL SPECIES	4	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Australian saltwater crocodile	MODERN SPECIES	49	NAP1L1 (ENSCPRG00005006105)	BBS10 (ENSCPRG00005006087)	OSBPL8 (ENSCPRG00005006069) #7	ZDHHC17 (ENSCPRG00005006020) #9	CSRP2 (ENSCPRG00005005963) #10	E2F7 (ENSCPRG00005005958) #11	ENSCPRG00005005917	NAV3 (ENSCPRG00005004050) #12	SYT1 (ENSCPRG00005003800) #14	PAWR (ENSCPRG00005003774) #16	PPP1R12A (ENSCPRG00005003724) #18	RPS16 (ENSCPRG00005003696)	OTOGL (ENSCPRG00005003554) #19	ENSCPRG00005003525	PTPRQ (ENSCPRG00005003495) #20	MYF6 (ENSCPRG00005003486) #21	MYF5 (ENSCPRG00005003473) #22	ENSCPRG00005003470 #23	LIN7A (ENSCPRG00005003468) #23	ACSS3 (ENSCPRG00005003271) #25	PPFIA2 (ENSCPRG00005003178) #26	CCDC59 (ENSCPRG00005003134) #27	METTL25 (ENSCPRG00005003132) #28	TMTC2 (ENSCPRG00005003097) #29	SLC6A15 (ENSCPRG00005003057) #32	TSPAN19 (ENSCPRG00005003030)	ENSCPRG00005003015 #33	ENSCPRG00005003000	ALX1 (ENSCPRG00005002988) #34	RASSF9 (ENSCPRG00005002976) #35	NTS (ENSCPRG00005002955) #36
Aves	ANCESTRAL SPECIES	1	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
African ostrich	MODERN SPECIES	426	ENSSCUG00000009190	ENSSCUG00000009187	KRR1 (ENSSCUG00000009184)	NAP1L1 (ENSSCUG00000009180)	OSBPL8 (ENSSCUG00000009164) #7	ZDHHC17 (ENSSCUG00000009151) #9	CSRP2 (ENSSCUG00000009147) #10	E2F7 (ENSSCUG00000009145) #11	ENSSCUG00000009143	NAV3 (ENSSCUG00000009108) #12	SYT1 (ENSSCUG00000009090) #14	PPP1R12A (ENSSCUG00000009087) #18	RPS16 (ENSSCUG00000009078)	OTOGL (ENSSCUG00000009047) #19	PTPRQ (ENSSCUG00000009002) #20	MYF6 (ENSSCUG00000008999) #21	ENSSCUG00000008997 #23	LIN7A (ENSSCUG00000008995) #23	ACSS3 (ENSSCUG00000008985) #25	PPFIA2 (ENSSCUG00000008966) #26	CCDC59 (ENSSCUG00000008956) #27	METTL25 (ENSSCUG00000008954) #28	TMTC2 (ENSSCUG00000008949) #29
Neognathae	ANCESTRAL SPECIES	3	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Neognathae_b	ANCESTRAL SPECIES	2	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Neognathae_c	ANCESTRAL SPECIES		ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000190133	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00500000044938
Golden eagle	MODERN SPECIES	18	PHLDA1 (ENSACCG00020011262)	NAP1L1 (ENSACCG00020011243)	BBS10 (ENSACCG00020011231)	OSBPL8 (ENSACCG00020011213) #7	ZDHHC17 (ENSACCG00020011189) #9	CSRP2 (ENSACCG00020011176) #10	E2F7 (ENSACCG00020011147) #11	NAV3 (ENSACCG00020011091) #12	SYT1 (ENSACCG00020011033) #14	PAWR (ENSACCG00020011015) #16	PPP1R12A (ENSACCG00020010939) #18	RPS16 (ENSACCG00020010874)	OTOGL (ENSACCG00020010835) #19	ENSACCG00020010786	PTPRQ (ENSACCG00020010748) #20	MYF6 (ENSACCG00020010717) #21	MYF5 (ENSACCG00020010710) #22	LIN7A (ENSACCG00020010701) #23	ACSS3 (ENSACCG00020010468) #25	PPFIA2 (ENSACCG00020010168) #26	ENSACCG00020010123	CCDC59 (ENSACCG00020010109) #27	ENSACCG00020016084	METTL25 (ENSACCG00020016068) #28	TMTC2 (ENSACCG00020016051) #29	ENSACCG00020016040	SLC6A15 (ENSACCG00020016027) #32	TSPAN19 (ENSACCG00020016013)	ENSACCG00020015998 #33	ALX1 (ENSACCG00020015990) #34	RASSF9 (ENSACCG00020015979) #35
Kakapo	MODERN SPECIES	20	BBS10 (ENSSHBG00005003419)	ENSSHBG00005003428	OSBPL8 (ENSSHBG00005003509) #7	ZDHHC17 (ENSSHBG00005003761) #9	CSRP2 (ENSSHBG00005003817) #10	E2F7 (ENSSHBG00005003861) #11	NAV3 (ENSSHBG00005004247) #12	ENSSHBG00005004847	SYT1 (ENSSHBG00005004867) #14	PAWR (ENSSHBG00005004872) #16	PPP1R12A (ENSSHBG00005004881) #18	RPS16 (ENSSHBG00005004902)	OTOGL (ENSSHBG00005004951) #19	ENSSHBG00005004998	PTPRQ (ENSSHBG00005005034) #20	MYF6 (ENSSHBG00005005072) #21	MYF5 (ENSSHBG00005005076) #22	LIN7A (ENSSHBG00005005088) #23	ACSS3 (ENSSHBG00005005107) #25	PPFIA2 (ENSSHBG00005005123) #26	CCDC59 (ENSSHBG00005005147) #27	METTL25 (ENSSHBG00005005155) #28	TMTC2 (ENSSHBG00005005167) #29	SLC6A15 (ENSSHBG00005005181) #32	TSPAN19 (ENSSHBG00005005237)	ENSSHBG00005005257 #33	ALX1 (ENSSHBG00005005283) #34	ENSSHBG00005005293	RASSF9 (ENSSHBG00005005303) #35	NTS (ENSSHBG00005005318) #36	MGAT4C (ENSSHBG00005005332) #37
Passeriformes	ANCESTRAL SPECIES	3	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Great tit	MODERN SPECIES	10	PHLDA1 (ENSPMJG00000012650)	NAP1L1 (ENSPMJG00000012651)	OSBPL8 (ENSPMJG00000012652) #7	ZDHHC17 (ENSPMJG00000012653) #9	CSRP2 (ENSPMJG00000012654) #10	E2F7 (ENSPMJG00000012655) #11	NAV3 (ENSPMJG00000012656) #12	SYT1 (ENSPMJG00000012662) #14	ENSPMJG00000012663	PAWR (ENSPMJG00000012664) #16	PPP1R12A (ENSPMJG00000012665) #18	RPS16 (ENSPMJG00000012667)	OTOGL (ENSPMJG00000012668) #19	ENSPMJG00000012669	PTPRQ (ENSPMJG00000012670) #20	MYF6 (ENSPMJG00000012671) #21	MYF5 (ENSPMJG00000012672) #22	LIN7A (ENSPMJG00000012673) #23	ACSS3 (ENSPMJG00000012674) #25	PPFIA2 (ENSPMJG00000012675) #26	CCDC59 (ENSPMJG00000012676) #27	METTL25 (ENSPMJG00000012677) #28	TMTC2 (ENSPMJG00000012678) #29	SLC6A15 (ENSPMJG00000012682) #32	ENSPMJG00000012685 #33	ALX1 (ENSPMJG00000012686) #34	RASSF9 (ENSPMJG00000012688) #35	NTS (ENSPMJG00000012689) #36	MGAT4C (ENSPMJG00000012690) #37	C12orf50 (ENSPMJG00000012691)	C12orf29 (ENSPMJG00000012692)
Passeriformes_d	ANCESTRAL SPECIES	3	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b	ENSGT00500000044938
Flycatcher	MODERN SPECIES	10	ENSFALG00000010390	KRR1 (ENSFALG00000010395)	PHLDA1 (ENSFALG00000014745)	NAP1L1 (ENSFALG00000010403)	OSBPL8 (ENSFALG00000010404) #7	ZDHHC17 (ENSFALG00000010415) #9	CSRP2 (ENSFALG00000010426) #10	E2F7 (ENSFALG00000010433) #11	NAV3 (ENSFALG00000010449) #12	SYT1 (ENSFALG00000010476) #14	PPP1R12A (ENSFALG00000010487) #18	ENSFALG00000028909	OTOGL (ENSFALG00000010495) #19	ENSFALG00000026391	PTPRQ (ENSFALG00000010498) #20	MYF6 (ENSFALG00000010503) #21	MYF5 (ENSFALG00000010507) #22	LIN7A (ENSFALG00000010511) #23	ACSS3 (ENSFALG00000010517) #25	PPFIA2 (ENSFALG00000010521) #26	CCDC59 (ENSFALG00000010525) #27	METTL25 (ENSFALG00000010529) #28	TMTC2 (ENSFALG00000010537) #29	SLC6A15 (ENSFALG00000010541) #32	ENSFALG00000028693 #33	ALX1 (ENSFALG00000010547) #34	RASSF9 (ENSFALG00000027104) #35	NTS (ENSFALG00000025234) #36	MGAT4C (ENSFALG00000010557) #37	C12orf50 (ENSFALG00000010559)	C12orf29 (ENSFALG00000023606)
Passeriformes_g	ANCESTRAL SPECIES	4	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00500000044938	ENSGT00730000111039.C
Medium ground finch	MODERN SPECIES	13	ENSGFOG00000005369	ENSGFOG00000005356	ENSGFOG00000005348	KRR1 (ENSGFOG00000005331)	NAP1L1 (ENSGFOG00000005292)	OSBPL8 (ENSGFOG00000005268) #7	ZDHHC17 (ENSGFOG00000005185) #9	CSRP2 (ENSGFOG00000005156) #10	E2F7 (ENSGFOG00000005143) #11	NAV3 (ENSGFOG00000005066) #12	SYT1 (ENSGFOG00000005048) #14	PPP1R12A (ENSGFOG00000005009) #18	RPS16 (ENSGFOG00000004986)	OTOGL (ENSGFOG00000004777) #19	PTPRQ (ENSGFOG00000004653) #20	MYF6 (ENSGFOG00000004628) #21	MYF5 (ENSGFOG00000004624) #22	LIN7A (ENSGFOG00000004616) #23	ACSS3 (ENSGFOG00000004536) #25	ENSGFOG00000000855 #26	CCDC59 (ENSGFOG00000000604) #27	METTL25 (ENSGFOG00000000588) #28	TMTC2 (ENSGFOG00000000573) #29
Passeroidea	ANCESTRAL SPECIES	3	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00500000044938	ENSGT00730000111039.C
Zebra finch	MODERN SPECIES	11	PHLDA1 (ENSTGUG00000018888)	NAP1L1 (ENSTGUG00000007412)	BBS10 (ENSTGUG00000007444)	OSBPL8 (ENSTGUG00000007445) #7	ZDHHC17 (ENSTGUG00000007477) #9	CSRP2 (ENSTGUG00000028299) #10	E2F7 (ENSTGUG00000007515) #11	NAV3 (ENSTGUG00000007519) #12	SYT1 (ENSTGUG00000007572) #14	PAWR (ENSTGUG00000020006) #16	PPP1R12A (ENSTGUG00000007603) #18	RPS16 (ENSTGUG00000007667)	OTOGL (ENSTGUG00000007680) #19	ENSTGUG00000023557	PTPRQ (ENSTGUG00000007720) #20	MYF6 (ENSTGUG00000007751) #21	MYF5 (ENSTGUG00000007755) #22	LIN7A (ENSTGUG00000007757) #23	ACSS3 (ENSTGUG00000007763) #25	PPFIA2 (ENSTGUG00000007778) #26	CCDC59 (ENSTGUG00000007835) #27	METTL25 (ENSTGUG00000007841) #28	TMTC2 (ENSTGUG00000007855) #29	SLC6A15 (ENSTGUG00000007865) #32	ENSTGUG00000007889 #33	ALX1 (ENSTGUG00000007899) #34	RASSF9 (ENSTGUG00000007908) #35	NTS (ENSTGUG00000027877) #36	MGAT4C (ENSTGUG00000007933) #37	ENSTGUG00000025254	C12orf29 (ENSTGUG00000007945)
Common canary	MODERN SPECIES	6	PHLDA1 (ENSSCAG00000008868)	NAP1L1 (ENSSCAG00000008861)	OSBPL8 (ENSSCAG00000008836) #7	ZDHHC17 (ENSSCAG00000008792) #9	CSRP2 (ENSSCAG00000008783) #10	E2F7 (ENSSCAG00000008773) #11	ENSSCAG00000008755 #12	ENSSCAG00000008738 #12	SYT1 (ENSSCAG00000008697) #14	PAWR (ENSSCAG00000008657) #16	PPP1R12A (ENSSCAG00000008580) #18	RPS16 (ENSSCAG00000008547)	OTOGL (ENSSCAG00000008492) #19	ENSSCAG00000008481	PTPRQ (ENSSCAG00000008462) #20	MYF6 (ENSSCAG00000008454) #21	MYF5 (ENSSCAG00000008451) #22	LIN7A (ENSSCAG00000008443) #23	ACSS3 (ENSSCAG00000008416) #25	PPFIA2 (ENSSCAG00000008164) #26	CCDC59 (ENSSCAG00000008055) #27	METTL25 (ENSSCAG00000007930) #28	MGAT4C (ENSSCAG00000007907) #37	NTS (ENSSCAG00000007904) #36	RASSF9 (ENSSCAG00000007901) #35	ALX1 (ENSSCAG00000007890) #34	ENSSCAG00000007880 #33	SLC6A15 (ENSSCAG00000007869) #32	TMTC2 (ENSSCAG00000007852) #29	C12orf29 (ENSSCAG00000007807)	CEP290 (ENSSCAG00000007595)
Galloanserae	ANCESTRAL SPECIES	3	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Anatidae	ANCESTRAL SPECIES	14	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT01100000267073	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Duck	MODERN SPECIES		PHLDA1 (ENSAPLG00000002044)	NAP1L1 (ENSAPLG00000016178)	OSBPL8 (ENSAPLG00000016005) #7	ZDHHC17 (ENSAPLG00000014034) #9	ENSAPLG00000014346	E2F7 (ENSAPLG00000014506) #11	NAV3 (ENSAPLG00000014672) #12	ENSAPLG00000029309	SYT1 (ENSAPLG00000014912) #14	PAWR (ENSAPLG00000027740) #16	PPP1R12A (ENSAPLG00000015197) #18	RPS16 (ENSAPLG00000015907)	OTOGL (ENSAPLG00000015946) #19	ENSAPLG00000019979	PTPRQ (ENSAPLG00000016187) #20	MYF6 (ENSAPLG00000002254) #21	MYF5 (ENSAPLG00000001124) #22	ENSAPLG00000001136 #23	LIN7A (ENSAPLG00000017756) #23	ENSAPLG00000029393	RANGAP1 (ENSAPLG00000006767)	ZC3H7B (ENSAPLG00000005880)	TEF (ENSAPLG00000005838)	TOB2 (ENSAPLG00000023708)	PHF5A (ENSAPLG00000021195)	ACO2 (ENSAPLG00000005198)	POLR3H (ENSAPLG00000005063)	CSDC2 (ENSAPLG00000005057)	DESI1 (ENSAPLG00000016507)	XRCC6 (ENSAPLG00000004469)	SNU13 (ENSAPLG00000001022)
Pink-footed goose	MODERN SPECIES	36	PHLDA1 (ENSABRG00000002143)	NAP1L1 (ENSABRG00000002153)	BBS10 (ENSABRG00000002187)	OSBPL8 (ENSABRG00000002275) #7	ZDHHC17 (ENSABRG00000002383) #9	CSRP2 (ENSABRG00000002441) #10	E2F7 (ENSABRG00000002456) #11	NAV3 (ENSABRG00000002539) #12	ENSABRG00000002691	SYT1 (ENSABRG00000002806) #14	PAWR (ENSABRG00000002832) #16	PPP1R12A (ENSABRG00000002856) #18	RPS16 (ENSABRG00000002997)	OTOGL (ENSABRG00000003060) #19	PTPRQ (ENSABRG00000003711) #20	MYF6 (ENSABRG00000003882) #21	MYF5 (ENSABRG00000003896) #22	LIN7A (ENSABRG00000003928) #23	ENSABRG00000003943 #25	ENSABRG00000003973 ##26	CHADL (ENSABRG00000003979)	RANGAP1 (ENSABRG00000004047)	ZC3H7B (ENSABRG00000004538)	TEF (ENSABRG00000004576)	TOB2 (ENSABRG00000004605)	PHF5A (ENSABRG00000004614)	ACO2 (ENSABRG00000004640)	POLR3H (ENSABRG00000004688)	CSDC2 (ENSABRG00000004705)	PMM1 (ENSABRG00000004715)	DESI1 (ENSABRG00000004740)
Phasianidae	ANCESTRAL SPECIES		ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Japanese quail	MODERN SPECIES		PHLDA1 (ENSCJPG00005016153)	NAP1L1 (ENSCJPG00005016162)	BBS10 (ENSCJPG00005016163)	OSBPL8 (ENSCJPG00005016164) #7	ZDHHC17 (ENSCJPG00005016170) #9	CSRP2 (ENSCJPG00005016171) #10	E2F7 (ENSCJPG00005016173) #11	ENSCJPG00005016175	NAV3 (ENSCJPG00005016185) #12	SYT1 (ENSCJPG00005016211) #14	PAWR (ENSCJPG00005016216) #16	PPP1R12A (ENSCJPG00005016217) #18	RPS16 (ENSCJPG00005000776)	OTOGL (ENSCJPG00005000816) #19	PTPRQ (ENSCJPG00005001013) #20	MYF6 (ENSCJPG00005001103) #21	MYF5 (ENSCJPG00005001107) #22	LIN7A (ENSCJPG00005001112) #23	ACSS3 (ENSCJPG00005001150) #25	PPFIA2 (ENSCJPG00005001332) #26	CCDC59 (ENSCJPG00005004695) #27	METTL25 (ENSCJPG00005004697) #28	TMTC2 (ENSCJPG00005004705) #29	SLC6A15 (ENSCJPG00005004747) #32	ENSCJPG00005004764 #33	ALX1 (ENSCJPG00005004774) #34	RASSF9 (ENSCJPG00005004777) #35	NTS (ENSCJPG00005004778) #36	MGAT4C (ENSCJPG00005004780) #37	C12orf50 (ENSCJPG00005004807)	C12orf29 (ENSCJPG00005004811)
Phasianidae_b	ANCESTRAL SPECIES	9	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622 #7	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #11	ENSGT00940000158014 #12	ENSGT00940000155394 #14	ENSGT00390000000406 #16	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #25	ENSGT01050000244900.a.a.a.a.b #26	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #32	ENSGT00940000163725	ENSGT00940000163898 #33	ENSGT00940000158251 #34	ENSGT00950000182839.A.c #35	ENSGT00640000091574 #36	ENSGT00940000155352 #37	ENSGT00920000149095.b
Turkey	MODERN SPECIES		KRR1 (ENSMGAG00000010844)	ENSMGAG00000010856	NAP1L1 (ENSMGAG00000010858)	OSBPL8 (ENSMGAG00000010890) #7	ZDHHC17 (ENSMGAG00000010911) #9	CSRP2 (ENSMGAG00000010931) #10	E2F7 (ENSMGAG00000010943) #11	NAV3 (ENSMGAG00000010956) #12	SYT1 (ENSMGAG00000011006) #14	PAWR (ENSMGAG00000011010) #16	PPP1R12A (ENSMGAG00000011011) #18	ENSMGAG00000011060	OTOGL (ENSMGAG00000011065) #19	PTPRQ (ENSMGAG00000011081) #20	ENSMGAG00000018753	MYF6 (ENSMGAG00000011091) #21	LIN7A (ENSMGAG00000011093) #23	ACSS3 (ENSMGAG00000011096) #25	ENSMGAG00000011103 #26	SLC6A15 (ENSMGAG00000011123) #32	TSPAN19 (ENSMGAG00000017647)	ENSMGAG00000011134 #33	ALX1 (ENSMGAG00000011132) #34	RASSF9 (ENSMGAG00000011136) #35	NTS (ENSMGAG00000011142) #36	MGAT4C (ENSMGAG00000011146) #37	ENSMGAG00000015695	C12orf29 (ENSMGAG00000011149)	CEP290 (ENSMGAG00000011158)	TMTC3 (ENSMGAG00000011193)	KITLG (ENSMGAG00000011203)
Chicken	MODERN SPECIES		KRR1 (ENSGALG00010012975)	PHLDA1 (ENSGALG00010014238)	NAP1L1 (ENSGALG00010013389)	BBS10 (ENSGALG00010013400)	OSBPL8 (ENSGALG00010013444) #7	ZDHHC17 (ENSGALG00010013476) #9	CSRP2 (ENSGALG00010013516) #10	E2F7 (ENSGALG00010013538) #11	NAV3 (ENSGALG00010013648) #12	SYT1 (ENSGALG00010012026) #14	PAWR (ENSGALG00010013283) #16	PPP1R12A (ENSGALG00010013333) #18	RPS16 (ENSGALG00010013358)	OTOGL (ENSGALG00010013364) #19	PTPRQ (ENSGALG00010012230) #20	MYF6 (ENSGALG00010012253) #21	MYF5 (ENSGALG00010012264) #22	ENSGALG00010012271 #23	ENSGALG00010014881 #23	ACSS3 (ENSGALG00010012337) #25	PPFIA2 (ENSGALG00010012450) #26	ENSGALG00010013569	CCDC59 (ENSGALG00010010017) #27	METTL25 (ENSGALG00010010042) #28	TMTC2 (ENSGALG00010011067) #29	SLC6A15 (ENSGALG00010011117) #32	TSPAN19 (ENSGALG00010011168)	ENSGALG00010011199 #33	ALX1 (ENSGALG00010011243) #34	RASSF9 (ENSGALG00010011313) #35	NTS (ENSGALG00010011352) #36
Gnathostomata	ANCESTRAL SPECIES	742															ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310
Elephant shark	MODERN SPECIES	1518	ENSCMIG00000000541	KCNA10 (ENSCMIG00000000491)	ENSCMIG00000000480	KCNA3 (ENSCMIG00000000474)	zgc:194242 (ENSCMIG00000000465)	ENSCMIG00000000462	ETV7 (ENSCMIG00000000457)	ENSCMIG00000000450	slc25a55a (ENSCMIG00000000424)	stk38a (ENSCMIG00000000363)	KCTD20 (ENSCMIG00000000316)	srsf3 (ENSCMIG00000000280)	ENSCMIG00000000260	naxe (ENSCMIG00000000251)	adora1b (ENSCMIG00000000245)	myog (ENSCMIG00000000235) ##22	ppfia4 (ENSCMIG00000017690) ##26	tmem183a (ENSCMIG00000017564)	ENSCMIG00000017562 #37	oard1 (ENSCMIG00000017558)	apobec2b (ENSCMIG00000017554)	BAK1 (ENSCMIG00000017551)	ENSCMIG00000017548	rps10 (ENSCMIG00000017547)	pacsin1b (ENSCMIG00000017543)	SPDEF (ENSCMIG00000017538)	ilrun (ENSCMIG00000017534)	BLTP3A (ENSCMIG00000017530)	taf11 (ENSCMIG00000017523)	ANKS1A (ENSCMIG00000017510)	TCP11X2 (ENSCMIG00000017496)
Euteleostomi	ANCESTRAL SPECIES	19	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00940000154404.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00530000064489	ENSGT01060000250538	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000170563
Actinopterygii	ANCESTRAL SPECIES	36	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00940000154404.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00530000064489	ENSGT01060000250538	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000166133	ENSGT00390000003368	ENSGT00970000193609	ENSGT00940000165906	ENSGT00940000158152	ENSGT00940000164224	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00940000160210	ENSGT00940000158688	ENSGT00940000159534	ENSGT00550000074828.b	ENSGT00940000162211
Reedfish	MODERN SPECIES	11	ENSECRG00000006470	ENSECRG00000006486	ENSECRG00000006490	ENSECRG00000006501	ENSECRG00000006506	ENSECRG00000006515	ENSECRG00000006530	SAMD9 (ENSECRG00000006570)	ENSECRG00000006575	ENSECRG00000006583	ENSECRG00000006587	ap4b1 (ENSECRG00000006592)	dclre1b (ENSECRG00000006599)	adora1b (ENSECRG00000006605)	ENSECRG00000006610	myog (ENSECRG00000006615) ##22	ppfia4 (ENSECRG00000006635) ##26	ENSECRG00000006669	ENSECRG00000006673 #26	tmem183a (ENSECRG00000006678)	ENSECRG00000006683	ENSECRG00000006689 #37	ENSECRG00000006704	ENSECRG00000006720	slc5a8l (ENSECRG00000006732)	tshba (ENSECRG00000006790)	slc25a55b (ENSECRG00000006959)	tspan2a (ENSECRG00000006967)	ENSECRG00000006981	ENSECRG00000006983	ngfb (ENSECRG00000006989)
Neopterygii	ANCESTRAL SPECIES	79								ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000158175	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000166133	ENSGT00390000003368	ENSGT00970000193609	ENSGT00940000165906	ENSGT00940000158152	ENSGT00940000164224	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00940000160210	ENSGT00940000158688	ENSGT00940000159534	ENSGT00550000074828.b	ENSGT00940000162211
Osteoglossocephalai	ANCESTRAL SPECIES	80															ENSGT01100000263491.a.b.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Clupeocephala	ANCESTRAL SPECIES	92	ENSGT00940000162710.d	ENSGT00940000158161.e.a	ENSGT00940000156542.b	ENSGT00940000154395.a.a.a.a	ENSGT00400000022095.b	ENSGT00950000182981.b.f.b.a	ENSGT01030000234563.a.a.c.b.b	ENSGT00550000074958	ENSGT01030000234637.a.a.a.b	ENSGT00940000159736.b	ENSGT00440000038072.d	ENSGT00930000151052	ENSGT00940000156015	ENSGT00390000004581	ENSGT01100000263491.a.b.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Otomorpha	ANCESTRAL SPECIES	21	ENSGT00940000162710.d	ENSGT00940000158161.e.a	ENSGT00940000156542.b	ENSGT00940000154395.a.a.a.a	ENSGT00400000022095.b	ENSGT00950000182981.b.f.b.a	ENSGT01030000234563.a.a.c.b.b	ENSGT00550000074958	ENSGT01030000234637.a.a.a.b	ENSGT00940000159736.b	ENSGT00440000038072.d	ENSGT00930000151052	ENSGT00940000156015	ENSGT00390000004581	ENSGT01100000263491.a.b.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.l	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Otophysi	ANCESTRAL SPECIES	92	ENSGT00390000006896	ENSGT00920000149095	ENSGT00940000162989.e	ENSGT00940000164703.a	ENSGT00940000157024.k.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000159692	ENSGT00390000014507.b	ENSGT00390000008827	ENSGT00940000180250	ENSGT00390000015805.a	ENSGT00940000154527.a.a.a	ENSGT00530000063539.a	ENSGT00940000161204	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.l	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Characiphysae	ANCESTRAL SPECIES	29	ENSGT00950000182986.a.a	ENSGT00390000006896	ENSGT00920000149095	ENSGT00940000162989.e	ENSGT00940000164703.a	ENSGT00940000157024.k.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000159692	ENSGT00390000014507.b	ENSGT00940000180250	ENSGT00390000015805.a	ENSGT00940000154527.a.a.a	ENSGT00530000063539.a	ENSGT00940000161204	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.l	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Channel catfish	MODERN SPECIES	13	CNTN2 (ENSIPUG00000024553)	ENSIPUG00000024549	ENSIPUG00000024547	nfasc (ENSIPUG00000024535)	pik3c2b (ENSIPUG00000024516)	ppp1r15b (ENSIPUG00000024515)	PLEKHA6 (ENSIPUG00000024503)	golt1a (ENSIPUG00000024499)	ENSIPUG00000024498	ENSIPUG00000024495	optc (ENSIPUG00000024492)	atp2b4 (ENSIPUG00000024450)	mdm4 (ENSIPUG00000024447)	lrrn2 (ENSIPUG00000024446)	ENSIPUG00000024437	myog (ENSIPUG00000024431) ##22	ppfia4 (ENSIPUG00000024430) ##26	tmem183a (ENSIPUG00000024373)	tfeb (ENSIPUG00000024371)	mdfi (ENSIPUG00000024370)	foxp4 (ENSIPUG00000024328)	fam72a (ENSIPUG00000024279)	srgap2 (ENSIPUG00000024278)	ikbke (ENSIPUG00000024267)	rassf5 (ENSIPUG00000024261)	Dyrk2 (ENSIPUG00000024055)	Mapkapk2 (ENSIPUG00000024053)	il10 (ENSIPUG00000024051)	il19l (ENSIPUG00000024048)	Prelp (ENSIPUG00000024045)	zgc:113307 (ENSIPUG00000024044)
Characiphysae_b	ANCESTRAL SPECIES	26	ENSGT00390000006896	ENSGT00920000149095	ENSGT00940000162989.e	ENSGT00940000164703.a	ENSGT00940000157024.k.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000159692	ENSGT00390000014507.b	ENSGT00940000180250	ENSGT00970000198224	ENSGT00390000015805.a	ENSGT00940000154527.a.a.a	ENSGT00530000063539.a	ENSGT00940000161204	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.l	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Characoidei	ANCESTRAL SPECIES	15	ENSGT00940000162989.f.a.a.k.b	ENSGT00940000162989.f.a.a.k.a	ENSGT00940000162989.e	ENSGT00940000164703.a	ENSGT00940000157024.k.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000159692	ENSGT00390000014507.b	ENSGT00940000180250	ENSGT00970000198224	ENSGT00390000015805.a	ENSGT00940000154527.a.a.a	ENSGT00530000063539.a	ENSGT00940000161204	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.l	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Red-bellied piranha	MODERN SPECIES	34	nfasca (ENSPNAG00000012881)	PIK3C2B (ENSPNAG00000002367)	ENSPNAG00000002306	PLEKHA6 (ENSPNAG00000012557)	GOLT1A (ENSPNAG00000012401)	ENSPNAG00000002232	ENSPNAG00000012312	csf1a (ENSPNAG00000012294)	optc (ENSPNAG00000012270)	atp2b4 (ENSPNAG00000012229)	mdm4 (ENSPNAG00000012078)	LRRN2 (ENSPNAG00000002083)	ENSPNAG00000012051	ENSPNAG00000012030	ENSPNAG00000012012	myog (ENSPNAG00000002045) ##22	ppfia4 (ENSPNAG00000011943) ##26	tmem183a (ENSPNAG00000011684)	tfeb (ENSPNAG00000011624)	ENSPNAG00000011579	foxp4 (ENSPNAG00000011573)	ENSPNAG00000001775	zgc:101564 (ENSPNAG00000011505)	srgap2 (ENSPNAG00000011481)
Mexicana tetra	MODERN SPECIES	14	nfasca (ENSAMXG00000009970)	ENSAMXG00000042827	PIK3C2B (ENSAMXG00000010065)	ENSAMXG00000043831	PLEKHA6 (ENSAMXG00000010119)	GOLT1A (ENSAMXG00000043507)	ENSAMXG00000042094	csf1a (ENSAMXG00000036298)	ENSAMXG00000030780	optc (ENSAMXG00000039686)	ENSAMXG00000043337	atp2b4 (ENSAMXG00000007448)	mdm4 (ENSAMXG00000029959)	LRRN2 (ENSAMXG00000025181)	ENSAMXG00000007441	myog (ENSAMXG00000041063) ##22	ppfia4 (ENSAMXG00000007380) ##26	tmem183a (ENSAMXG00000035114)	tfeb (ENSAMXG00000007343)	ENSAMXG00000007336	ENSAMXG00000040051	foxp4 (ENSAMXG00000007304)	zgc:101564 (ENSAMXG00000036558)	srgap2 (ENSAMXG00000007282)	ikbke (ENSAMXG00000007271)	RASSF5 (ENSAMXG00000036315)	dyrk3 (ENSAMXG00000007263)	mapkapk2a (ENSAMXG00000044014)	il10 (ENSAMXG00000029145)	il19l (ENSAMXG00000007239)	PRELP (ENSAMXG00000038615)
Electric eel	MODERN SPECIES	351												atp2b4 (ENSEEEG00000018410)	mdm4 (ENSEEEG00000018483)	LRRN2 (ENSEEEG00000018486)	ENSEEEG00000018488	myog (ENSEEEG00000018490) ##22	ppfia4 (ENSEEEG00000018504) ##26	tmem183a (ENSEEEG00000018570)	tfeb (ENSEEEG00000018574)	foxp4 (ENSEEEG00000018575)
Cyprinoidei	ANCESTRAL SPECIES	23	ENSGT00940000162989.f.a.a.e.b	ENSGT00940000162989.f.a.a.e.a	ENSGT00940000161149.f	ENSGT00940000164703.a	ENSGT00940000157024.k.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000159692	ENSGT00390000014507.b	ENSGT00940000180250	ENSGT00390000015805.a	ENSGT00940000154527.a.a.a	ENSGT00530000063539.a	ENSGT00940000161204	ENSGT01100000263491.a.b.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.l	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	104	ENSGT00940000162989.f.a.a.e.a.b	ENSGT00940000162989.e.v.b.a	ENSGT00940000164703.a.a	ENSGT00940000157024.k.a.a	ENSGT00940000158263.e	ENSGT00940000154404.b.j.a	ENSGT00940000159692.e	ENSGT00390000014507.b.j	ENSGT00940000180250	ENSGT00390000015805.a.b	ENSGT00940000157574.f.b	ENSGT00940000154527.a.a.a.o	ENSGT00530000063539.a.ub	ENSGT00940000161204.h	ENSGT01100000263491.a.b.a.b.a.a	ENSGT00950000182959.a.b.b.b.a ##22	ENSGT01050000244900.a.a.a.a.a.l ##26	ENSGT00390000009310.z	ENSGT00940000159691.i	ENSGT00940000160187.b	ENSGT00940000158700.a	ENSGT00390000005106.k	ENSGT00950000182824.a.a.b.b.a	ENSGT00950000182937.B.a.e	ENSGT00940000159288.c	ENSGT00940000159878.c	ENSGT00940000157261.l.b	ENSGT00950000183124.A.e.a	ENSGT00950000183124.C.c	ENSGT00940000160163.c	ENSGT00940000158177.a.a
Goldfish	MODERN SPECIES	29	chia.1 (ENSCARG00000012993)	cntn2 (ENSCARG00000013056)	ENSCARG00000017378	nfasca (ENSCARG00000017635)	PIK3C2B (ENSCARG00000024898)	ENSCARG00000025240	PLEKHA6 (ENSCARG00000025307)	GOLT1A (ENSCARG00000025531)	ENSCARG00000025546	csf1a (ENSCARG00000025558)	optc (ENSCARG00000025575)	atp2b4 (ENSCARG00000025609)	mdm4 (ENSCARG00000025705)	LRRN2 (ENSCARG00000025741)	ENSCARG00000025742	myog (ENSCARG00000025748) ##22	ppfia4 (ENSCARG00000025803) ##26	tmem183a (ENSCARG00000026676)	tfeb (ENSCARG00000026731)	ENSCARG00000026755	foxp4 (ENSCARG00000026795)	zgc:101564 (ENSCARG00000027170)	srgap2 (ENSCARG00000027206)	RASSF5 (ENSCARG00000027584)	dyrk3 (ENSCARG00000027607)	mapkapk2a (ENSCARG00000027698)	il10 (ENSCARG00000028938)	il19l (ENSCARG00000028967)	PRELP (ENSCARG00000028975)	zgc:113307 (ENSCARG00000028981)	fmoda (ENSCARG00000028990)
Cyprininae_a	ANCESTRAL SPECIES	3	ENSGT00940000162989.f.a.a.e.a.b	ENSGT00940000162989.e.v.b.a	ENSGT00940000164703.a.a	ENSGT00940000157024.k.a.a	ENSGT00940000158263.e	ENSGT00940000154404.b.j.a	ENSGT00940000159692.e	ENSGT00390000014507.b.j	ENSGT00940000180250.b	ENSGT00390000015805.a.b	ENSGT00940000157574.f.b	ENSGT00940000154527.a.a.a.o	ENSGT00530000063539.a.ub	ENSGT00940000161204.h	ENSGT01100000263491.a.b.a.b.a.a	ENSGT00950000182959.a.b.b.b.a ##22	ENSGT01050000244900.a.a.a.a.a.l ##26	ENSGT00390000009310.z	ENSGT00940000159691.i	ENSGT00940000160187.b	ENSGT00940000158700.a	ENSGT00390000005106.k	ENSGT00950000182824.a.a.b.b.a	ENSGT00950000182937.B.a.e	ENSGT00940000159288.c	ENSGT00940000159878.c	ENSGT00940000157261.l.b	ENSGT00950000183124.A.e.a	ENSGT00950000183124.C.c	ENSGT00940000160163.c	ENSGT00940000158177.a.a
Common carp reference	MODERN SPECIES	42	GOLT1A (ENSCCRG00000080039)	csf1a (ENSCCRG00000018049)	optc (ENSCCRG00000026905)	ENSCCRG00000054034	atp2b4 (ENSCCRG00000026794)	mdm4 (ENSCCRG00000057229)	ENSCCRG00000036709	ENSCCRG00000036663	ENSCCRG00000037238	ENSCCRG00000068716	ENSCCRG00000054374	ENSCCRG00000077160	ENSCCRG00000061844	ENSCCRG00000055339	si:ch211-86h15.1 (ENSCCRG00000073580)	myog (ENSCCRG00000068079) ##22	ppfia4 (ENSCCRG00000071380) ##26	tmem183a (ENSCCRG00000057482)	tfeb (ENSCCRG00000031918)	ENSCCRG00000070324	foxp4 (ENSCCRG00000025138)	zgc:101564 (ENSCCRG00000074850)	srgap2 (ENSCCRG00000044861)	ikbke (ENSCCRG00000045071)	RASSF5 (ENSCCRG00000056830)	dyrk3 (ENSCCRG00000067331)	mapkapk2a (ENSCCRG00000063236)	il10 (ENSCCRG00000020358)	il19l (ENSCCRG00000020353)	ENSCCRG00000020349	fmoda (ENSCCRG00000020344)
Golden-line barbel	MODERN SPECIES	1	zc3h11a (ENSSGRG00000039320)	ENSSGRG00000039335	chia.2 (ENSSGRG00000040312)	ENSSGRG00000040315	cntn2 (ENSSGRG00000040337)	nfasca (ENSSGRG00000041470)	PIK3C2B (ENSSGRG00000045490)	ENSSGRG00000046030	PLEKHA6 (ENSSGRG00000046031)	GOLT1A (ENSSGRG00000046046)	ENSSGRG00000046048	csf1a (ENSSGRG00000046052)	atp2b4 (ENSSGRG00000046055)	mdm4 (ENSSGRG00000046059)	ENSSGRG00000046064	myog (ENSSGRG00000046066) ##22	ppfia4 (ENSSGRG00000046076) ##26	tmem183a (ENSSGRG00000046104)	tfeb (ENSSGRG00000046105)	ENSSGRG00000046106	foxp4 (ENSSGRG00000046107)	zgc:101564 (ENSSGRG00000046109)	srgap2 (ENSSGRG00000046111)	ikbke (ENSSGRG00000046121)	RASSF5 (ENSSGRG00000046177)	dyrk3 (ENSSGRG00000046179)	mapkapk2a (ENSSGRG00000046181)	il10 (ENSSGRG00000046204)	il19l (ENSSGRG00000046206)	PRELP (ENSSGRG00000046207)	zgc:113307 (ENSSGRG00000046208)
Cyprininae	ANCESTRAL SPECIES	17	ENSGT00940000162989.e.v.a.b	ENSGT00940000162989.f.a.a.e.b.a	ENSGT00940000162989.f.a.a.e.a.a	ENSGT00940000162989.e.v.b.b	ENSGT00940000164703.a.b	ENSGT00940000157024.k.a.b	ENSGT00940000158263.f	ENSGT00940000154404.b.j.b	ENSGT00940000159692.f	ENSGT00390000014507.b.i	ENSGT00390000015805.a.a	ENSGT00940000157574.f.a	ENSGT00940000154527.a.a.a.n	ENSGT00530000063539.a.vb	ENSGT00940000161204.g	ENSGT00950000182959.a.b.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a.k ##26	ENSGT00390000009310.`b	ENSGT00940000159691.j	ENSGT00940000160187.a	ENSGT00940000158700.b	ENSGT00390000005106.l	ENSGT00950000182824.a.a.b.b.b	ENSGT00950000182937.B.a.f	ENSGT00940000159288.d	ENSGT00940000159878.d	ENSGT00940000157261.l.a	ENSGT00950000183124.A.e.b	ENSGT00950000183124.C.d	ENSGT00940000160163.d	ENSGT00940000158177.a.b
Goldfish	MODERN SPECIES	2	zc3h11a (ENSCARG00000021953)	ENSCARG00000021967	ENSCARG00000022153	ENSCARG00000022192	cntn2 (ENSCARG00000022339)	nfasca (ENSCARG00000024763)	PIK3C2B (ENSCARG00000026809)	ENSCARG00000027198	PLEKHA6 (ENSCARG00000027249)	csf1a (ENSCARG00000027791)	GOLT1A (ENSCARG00000027837)	optc (ENSCARG00000027848)	atp2b4 (ENSCARG00000027880)	mdm4 (ENSCARG00000028036)	LRRN2 (ENSCARG00000028053)	myog (ENSCARG00000028061) ##22	ppfia4 (ENSCARG00000028204) ##26	tmem183a (ENSCARG00000031917)	tfeb (ENSCARG00000031931)	ENSCARG00000031993	foxp4 (ENSCARG00000032067)	zgc:101564 (ENSCARG00000032458)	srgap2 (ENSCARG00000032519)	ikbke (ENSCARG00000033003)	RASSF5 (ENSCARG00000033048)	gfDYRK3 (ENSCARG00000033063)	mapkapk2a (ENSCARG00000033130)	il10 (ENSCARG00000033715)	ENSCARG00000033741	PRELP (ENSCARG00000033773)	ENSCARG00000033784
Cyprininae_a	ANCESTRAL SPECIES	9	ENSGT00940000162989.f.a.a.e.a.a	ENSGT00940000162989.e.v.b.b	ENSGT00940000164703.a.b	ENSGT00940000157024.k.a.b	ENSGT00940000158263.f	ENSGT00940000154404.b.j.b	ENSGT00940000159692.f	ENSGT00390000014507.b.i	ENSGT00940000180250.a	ENSGT00390000015805.a.a	ENSGT00940000157574.f.a	ENSGT00940000154527.a.a.a.n	ENSGT00530000063539.a.vb	ENSGT00940000161204.g	ENSGT00940000162678	ENSGT00950000182959.a.b.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a.k ##26	ENSGT00390000009310.`b	ENSGT00940000159691.j	ENSGT00940000160187.a	ENSGT00940000158700.b	ENSGT00390000005106.l	ENSGT00950000182824.a.a.b.b.b	ENSGT00950000182937.B.a.f	ENSGT00940000159288.d	ENSGT00940000159878.d	ENSGT00940000157261.l.a	ENSGT00950000183124.A.e.b	ENSGT00950000183124.C.d	ENSGT00940000160163.d	ENSGT00940000158177.a.b
Common carp reference	MODERN SPECIES	13	chia.3 (ENSCCRG00000074395)	chia.2 (ENSCCRG00000073801)	ENSCCRG00000056312	cntn2 (ENSCCRG00000022069)	nfasca (ENSCCRG00000004990)	PIK3C2B (ENSCCRG00000024602)	ENSCCRG00000003472	GOLT1A (ENSCCRG00000003449)	ENSCCRG00000080162	csf1a (ENSCCRG00000003377)	optc (ENSCCRG00000016449)	atp2b4 (ENSCCRG00000016194)	mdm4 (ENSCCRG00000016186)	ENSCCRG00000063198	ENSCCRG00000041866	myog (ENSCCRG00000016063) ##22	ppfia4 (ENSCCRG00000061879) ##26	tmem183a (ENSCCRG00000003185)	tfeb (ENSCCRG00000034741)	ENSCCRG00000075549	foxp4 (ENSCCRG00000043836)	zgc:101564 (ENSCCRG00000061267)	srgap2 (ENSCCRG00000037585)	ikbke (ENSCCRG00000037352)	RASSF5 (ENSCCRG00000082840)	dyrk3 (ENSCCRG00000054155)	mapkapk2a (ENSCCRG00000062136)	il19l (ENSCCRG00000028494)	ENSCCRG00000028493	zgc:113307 (ENSCCRG00000028491)	fmoda (ENSCCRG00000057559)
Golden-line barbel	MODERN SPECIES	124															ENSSGRG00000022136	myog (ENSSGRG00000022137) ##22	ppfia4 (ENSSGRG00000022157) ##26	tfeb (ENSSGRG00000022610)	ENSSGRG00000022611	foxp4 (ENSSGRG00000022623)	ENSSGRG00000024037	zgc:101564 (ENSSGRG00000024040)	srgap2 (ENSSGRG00000024045)	ikbke (ENSSGRG00000024409)	RASSF5 (ENSSGRG00000024444)	dyrk3 (ENSSGRG00000024450)	mapkapk2a (ENSSGRG00000024467)	il10 (ENSSGRG00000024589)	il19l (ENSSGRG00000024596)	PRELP (ENSSGRG00000024598)	zgc:113307 (ENSSGRG00000024600)
Zebrafish	MODERN SPECIES	2	chia.3 (ENSDARG00000009612)	chia.2 (ENSDARG00000099185)	chia.1 (ENSDARG00000100635)	cntn2 (ENSDARG00000000472)	nfasca (ENSDARG00000061099)	PIK3C2B (ENSDARG00000086927)	ENSDARG00000102574	PLEKHA6 (ENSDARG00000020328)	GOLT1A (ENSDARG00000088933)	kiss1 (ENSDARG00000075829)	csf1a (ENSDARG00000075343)	optc (ENSDARG00000014358)	atp2b4 (ENSDARG00000044902)	mdm4 (ENSDARG00000057513)	si:ch211-86h15.1 (ENSDARG00000074098)	myog (ENSDARG00000009438) ##22	ppfia4 (ENSDARG00000053205) ##26	tmem183a (ENSDARG00000044899)	tfeb (ENSDARG00000010794)	MDFI (ENSDARG00000089564)	foxp4 (ENSDARG00000076120)	FAM72B (ENSDARG00000070621)	ENSDARG00000112164	srgap2 (ENSDARG00000032161)	ikbke (ENSDARG00000070606)	RASSF5 (ENSDARG00000070601)	dyrk3 (ENSDARG00000070600)	mapkapk2a (ENSDARG00000002552)	il10 (ENSDARG00000078147)	il19l (ENSDARG00000090344)	PRELP (ENSDARG00000070597)
Clupeiformes	ANCESTRAL SPECIES	151																ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.l	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Atlantic herring	MODERN SPECIES	21	npepl1 (ENSCHAG00000009212)	ENSCHAG00000009200	ctsz (ENSCHAG00000009119)	nelfcd (ENSCHAG00000008753)	ENSCHAG00000008741	ENSCHAG00000008726	mon1a (ENSCHAG00000008722)	ENSCHAG00000008627	ENSCHAG00000008556	camkvb (ENSCHAG00000008371)	SEMA3F (ENSCHAG00000002507)	ENSCHAG00000002190	uroc1 (ENSCHAG00000001574)	ENSCHAG00000001519	ENSCHAG00000001495	myog (ENSCHAG00000001471) ##22	ppfia4 (ENSCHAG00000001137) ##26	tmem183a (ENSCHAG00000000798)	ENSCHAG00000023034	MDFI (ENSCHAG00000023022)	foxp4 (ENSCHAG00000022959)	zgc:101564 (ENSCHAG00000022938)	srgap2 (ENSCHAG00000021891)	ikbke (ENSCHAG00000021716)	RASSF5 (ENSCHAG00000021702)	dyrk3 (ENSCHAG00000021690)	zgc:113307 (ENSCHAG00000021634)	MAPKAPK2 (ENSCHAG00000021388)	il10 (ENSCHAG00000021377)	il19l (ENSCHAG00000021347)	PRELP (ENSCHAG00000021339)
Denticle herring	MODERN SPECIES	3	ENSDCDG00000021359	SLC6A17 (ENSDCDG00000021365)	ENSDCDG00000021373	strip1 (ENSDCDG00000021378)	AHCYL1 (ENSDCDG00000021397)	nfya (ENSDCDG00000021856)	sort1a (ENSDCDG00000021892)	psma5 (ENSDCDG00000023264)	sypl2a (ENSDCDG00000023268)	atxn7l2a (ENSDCDG00000023270)	cyb561d1 (ENSDCDG00000023273)	ENSDCDG00000023277	USP48 (ENSDCDG00000023316)	LDLRAD2 (ENSDCDG00000024992)	mdm4 (ENSDCDG00000024994)	myog (ENSDCDG00000024998) ##22	ppfia4 (ENSDCDG00000025140) ##26	ENSDCDG00000030269	tmem183a (ENSDCDG00000030272)	tfeb (ENSDCDG00000030280)	MDFI (ENSDCDG00000030286)	foxp4 (ENSDCDG00000030321)	zgc:101564 (ENSDCDG00000030708)	srgap2 (ENSDCDG00000030796)	ikbke (ENSDCDG00000032808)	RASSF5 (ENSDCDG00000032811)	dyrk3 (ENSDCDG00000032813)	MAPKAPK2 (ENSDCDG00000032818)	ENSDCDG00000032827	ENSDCDG00000032876	PRELP (ENSDCDG00000032878)
Euteleosteomorpha	ANCESTRAL SPECIES	24	ENSGT00940000158759	ENSGT00390000012818	ENSGT00940000153675.a.a.b	ENSGT00940000159654	ENSGT00390000006113	ENSGT00940000160929	ENSGT00530000063882.a	ENSGT00860000133842.m	ENSGT00940000155203.b	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Protacanthopterygii	ANCESTRAL SPECIES	3	ENSGT00940000153675.a.a.a.b	ENSGT00940000159654	ENSGT00390000006113	ENSGT00940000160929	ENSGT00530000063882.a	ENSGT00860000133842.m	ENSGT00940000155203.b	ENSGT00940000165359.b	ENSGT00940000165359.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00940000160679	ENSGT00440000033870.a.b	ENSGT01090000260431	ENSGT00390000014309	ENSGT00940000156759.a.b.b	ENSGT00390000001231	ENSGT00940000157867.a.a	ENSGT00940000156971.B.a	ENSGT00940000158496	ENSGT00390000006238
Salmoninae	ANCESTRAL SPECIES	3	ENSGT00940000159654.fb.b	ENSGT00390000006113	ENSGT00940000160929	ENSGT00530000063882.a	ENSGT00860000133842.m	ENSGT00940000165359.b	ENSGT00940000165359.a	ENSGT00940000155203.b	ENSGT00940000158192	ENSGT00940000160817	ENSGT00510000049583.l	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a.u.a ##26	ENSGT00390000009310.db	ENSGT00940000159691.k.a	ENSGT00940000160187.c.b	ENSGT00940000158700	ENSGT00940000160679.c	ENSGT00440000033870.a.b.a	ENSGT00390000014309.g	ENSGT00940000156759.a.b.b.c	ENSGT00390000001231.e	ENSGT00940000157867.a.a.c.b	ENSGT00390000006238.ob	ENSGT00510000046803.a.t.b	ENSGT00560000077335.p.a	ENSGT00940000163190.g.b.c
Salmoninae_a	ANCESTRAL SPECIES	25	ENSGT00390000012818.e.a	ENSGT00940000153675.a.b.a	ENSGT00940000159654.fb.b	ENSGT00390000006113	ENSGT00940000160929	ENSGT00530000063882.a	ENSGT00860000133842.m	ENSGT00940000155203.b	ENSGT00940000158192.`b	ENSGT00940000160817	ENSGT00510000049583.l	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a.u.a ##26	ENSGT00390000009310.db	ENSGT00940000159691.k.a	ENSGT00940000160187.c.b	ENSGT00940000158700	ENSGT00940000160679.c	ENSGT00440000033870.a.b.a	ENSGT00390000014309.g.a	ENSGT00940000156759.a.b.b.c	ENSGT00390000001231.e	ENSGT00390000014309.g.b	ENSGT00940000157867.a.a.c.b	ENSGT00940000156971.B.a.d.a	ENSGT00940000158496.h	ENSGT00390000006238.pb.a
Oncorhynchus	ANCESTRAL SPECIES	5	ENSGT00940000159654.fb.b	ENSGT00390000006113	ENSGT00940000160929	ENSGT00530000063882.a	ENSGT00860000133842.m	ENSGT00940000155203.b	ENSGT00940000158192.`b	ENSGT00940000165359.b	ENSGT00940000165359.a	ENSGT00940000158192.ab	ENSGT00510000049583.l	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a.u.a ##26	ENSGT00390000009310.db	ENSGT00940000159691.k.a	ENSGT00940000160187.c.b	ENSGT00940000158700.c.b	ENSGT00940000160679.c	ENSGT00440000033870.a.b.a	ENSGT00390000014309.g.b	ENSGT00940000156759.a.b.b.c	ENSGT00390000001231.e	ENSGT00940000157867.a.a.c.b	ENSGT00940000156971.B.a.d.a	ENSGT00940000158496.h	ENSGT00390000006238.pb.a	ENSGT00510000046803.a.t.b
Oncorhynchus_a	ANCESTRAL SPECIES	4	ENSGT00940000158759.j	ENSGT00390000012818.e.a	ENSGT00940000153675.a.b.a	ENSGT00940000159654.fb.b	ENSGT00390000006113	ENSGT00940000160929	ENSGT00530000063882.a	ENSGT00860000133842.m	ENSGT00940000155203.b	ENSGT00940000158192.`b	ENSGT00510000049583.l	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a.u.a ##26	ENSGT00390000009310.db	ENSGT00940000159691.k.a	ENSGT00940000160187.c.b	ENSGT00940000158700.c.b	ENSGT00940000160679.c	ENSGT00440000033870.a.b.a	ENSGT00390000014309.g.b	ENSGT00940000156759.a.b.b.c	ENSGT00390000001231.e	ENSGT00940000157867.a.a.c.b	ENSGT00940000156971.B.a.d.a	ENSGT00940000158496.h	ENSGT00390000006238.pb.a	ENSGT00510000046803.a.t.b
Chinook salmon	MODERN SPECIES	31	snrpe (ENSOTSG00005001013)	ENSOTSG00005001008	cdc42 (ENSOTSG00005001002)	wnt4 (ENSOTSG00005000926)	svbp (ENSOTSG00005000914)	fbxo2 (ENSOTSG00005000907)	PHF13 (ENSOTSG00005000900)	DNAJC11 (ENSOTSG00005000877)	CAMTA1 (ENSOTSG00005000853)	VAMP3 (ENSOTSG00005000842)	uts2b (ENSOTSG00005000837)	mxra8a (ENSOTSG00005000831)	psma5 (ENSOTSG00005000827)	sort1a (ENSOTSG00005000736)	mdm4 (ENSOTSG00005000726)	myog (ENSOTSG00005000725) ##22	ppfia4 (ENSOTSG00005000720) ##26	tmem183a (ENSOTSG00005028747)	ENSOTSG00005028744	ENSOTSG00005028739	ENSOTSG00005028732	ENSOTSG00005028731	ENSOTSG00005028716	ENSOTSG00005028703	nsrp1 (ENSOTSG00005028696)	ENSOTSG00005028691	ENSOTSG00005028689	coro6 (ENSOTSG00005028688)	dnajc3b (ENSOTSG00005028687)	tram1 (ENSOTSG00005028686)	tas1r3 (ENSOTSG00005028685)
Coho salmon	MODERN SPECIES	25	snrpe (ENSOKIG00005015427)	cdc42 (ENSOKIG00005015406)	wnt4 (ENSOKIG00005015323)	svbp (ENSOKIG00005015295)	fbxo2 (ENSOKIG00005015286)	PHF13 (ENSOKIG00005015277)	DNAJC11 (ENSOKIG00005015146)	ENSOKIG00005015130	ENSOKIG00005015114	VAMP3 (ENSOKIG00005015094)	ENSOKIG00005015077	mxra8a (ENSOKIG00005015057)	psma5 (ENSOKIG00005015046)	sort1a (ENSOKIG00005014837)	mdm4 (ENSOKIG00005014819)	myog (ENSOKIG00005014799) ##22	ppfia4 (ENSOKIG00005014172) ##26	tmem183a (ENSOKIG00005014078)	tfeb (ENSOKIG00005014038)	ENSOKIG00005014028	foxp4 (ENSOKIG00005048195)	tas1r3 (ENSOKIG00005048183)	errfi1a (ENSOKIG00005048182)	pax7a (ENSOKIG00005048096)	park7 (ENSOKIG00005048074)	mrps16 (ENSOKIG00005048071)	MRPS16 (ENSOKIG00005048068)	KCNAB2 (ENSOKIG00005048049)	MRTO4 (ENSOKIG00005047966)	IFFO2 (ENSOKIG00005047961)	aldh4a1 (ENSOKIG00005046929)
Rainbow trout	MODERN SPECIES	28	svbp (ENSOMYG00000070754)	fbxo2 (ENSOMYG00000029814)	PHF13 (ENSOMYG00000029803)	DNAJC11 (ENSOMYG00000029723)	ENSOMYG00000064011	ENSOMYG00000053759	CAMTA1 (ENSOMYG00000029624)	VAMP3 (ENSOMYG00000029581)	uts2b (ENSOMYG00000029539)	ENSOMYG00000029494	ENSOMYG00000017578	ENSOMYG00000029450	ENSOMYG00000069433	ENSOMYG00000029372	mdm4 (ENSOMYG00000029162)	myog (ENSOMYG00000029149) ##22	ppfia4 (ENSOMYG00000029043) ##26	tmem183a (ENSOMYG00000028864)	tfeb (ENSOMYG00000028821)	ENSOMYG00000049373	ENSOMYG00000028770	ENSOMYG00000070460	ENSOMYG00000028739	ENSOMYG00000064230	ENSOMYG00000028726	mrps16 (ENSOMYG00000028710)	pax7a (ENSOMYG00000028604)	park7 (ENSOMYG00000028484)	ENSOMYG00000028451	ENSOMYG00000065510	ENSOMYG00000028436
Salmo	ANCESTRAL SPECIES	6	ENSGT00940000153675.a.b.a	ENSGT00940000159654.fb.b	ENSGT00390000006113	ENSGT00940000160929	ENSGT00530000063882.a	ENSGT00860000133842.m	ENSGT00940000155203.b	ENSGT00940000165359.a	ENSGT00940000158192.`b	ENSGT00940000160817	ENSGT00510000049583.l	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a.u.a ##26	ENSGT00390000009310.db	ENSGT00940000159691.k.a.a	ENSGT01060000253626	ENSGT00940000160187.c.b	ENSGT00940000158700	ENSGT00940000160679.c	ENSGT00440000033870.a.b.a	ENSGT00390000014309.g.a	ENSGT00940000156759.a.b.b.c	ENSGT00390000001231.e	ENSGT00390000014309.g.b	ENSGT00940000157867.a.a.c.b	ENSGT00940000156971.B.a.d.a	ENSGT00940000158496.h
River trout	MODERN SPECIES	7	cdc42 (ENSSTUG00000003783)	wnt4 (ENSSTUG00000003814)	ENSSTUG00000003889	svbp (ENSSTUG00000003892)	fbxo2 (ENSSTUG00000003905)	PHF13 (ENSSTUG00000003917)	DNAJC11 (ENSSTUG00000003969)	CAMTA1 (ENSSTUG00000004487)	vamp3 (ENSSTUG00000004498)	per3 (ENSSTUG00000004514)	uts2b (ENSSTUG00000004551)	mxra8a (ENSSTUG00000004581)	psma5 (ENSSTUG00000004610)	sort1a (ENSSTUG00000004650)	mdm4 (ENSSTUG00000005714)	myog (ENSSTUG00000005721) ##22	ppfia4 (ENSSTUG00000005786) ##26	tmem183a (ENSSTUG00000007331)	ENSSTUG00000007341	ENSSTUG00000007352	ENSSTUG00000007358	foxp4 (ENSSTUG00000007396)	ENSSTUG00000008806	tas1r3 (ENSSTUG00000008808)	errfi1a (ENSSTUG00000008842)	mrps16 (ENSSTUG00000008857)	pax7a (ENSSTUG00000008874)	park7 (ENSSTUG00000009170)	KCNAB2 (ENSSTUG00000009186)	mrps16 (ENSSTUG00000009253)	MEGF6 (ENSSTUG00000009271)
Atlantic salmon	MODERN SPECIES	14	ENSSSAG00000102861	fbxo2 (ENSSSAG00000084563)	PHF13 (ENSSSAG00000118443)	ENSSSAG00000087404	ENSSSAG00000105986	DNAJC11 (ENSSSAG00000077761)	ENSSSAG00000101369	ENSSSAG00000077731	ENSSSAG00000098099	ENSSSAG00000077714	PER3 (ENSSSAG00000077674)	uts2b (ENSSSAG00000077669)	ENSSSAG00000077663	ENSSSAG00000077660	ENSSSAG00000077252	ENSSSAG00000086669 ##22	tmem183a (ENSSSAG00000097594)	ppfia4 (ENSSSAG00000074325) ##26	tfeb (ENSSSAG00000074212)	ENSSSAG00000122256	ENSSSAG00000084948	foxp4 (ENSSSAG00000072458)	ENSSSAG00000106440	ENSSSAG00000072411	errfi (ENSSSAG00000072410)	mrps16 (ENSSSAG00000072407)	pax7a (ENSSSAG00000064587)	park7 (ENSSSAG00000071756)	ENSSSAG00000071753	ENSSSAG00000071733	ENSSSAG00000071679
Huchen	DUPLICATION
Huchen	MODERN SPECIES	1316							DNAJC11 (ENSHHUG00000002742)	ENSHHUG00000002524	VAMP3 (ENSHHUG00000002497)	ENSHHUG00000002473	mxra8a (ENSHHUG00000002463)	ENSHHUG00000002442	psma5 (ENSHHUG00000002362)	sort1a (ENSHHUG00000002321)	mdm4 (ENSHHUG00000002311)	myog (ENSHHUG00000002285) ##22	ppfia4 (ENSHHUG00000001758) ##26	tmem183a (ENSHHUG00000001752)	tfeb (ENSHHUG00000001698)
Huchen	MODERN SPECIES	4466																myog (ENSHHUG00000047805) ##22	PPFIA4 (ENSHHUG00000047818) ##26
Northern pike	MODERN SPECIES	16	snrpe (ENSELUG00000026835)	ENSELUG00000012390	ENSELUG00000000454	wnt4 (ENSELUG00000012344)	svbp (ENSELUG00000012304)	fbxo2 (ENSELUG00000012321)	PHF13 (ENSELUG00000012294)	DNAJC11 (ENSELUG00000012267)	ENSELUG00000012183	VAMP3 (ENSELUG00000024962)	ENSELUG00000012117	ENSELUG00000012086	mhc2dgb (ENSELUG00000009450)	psma5 (ENSELUG00000011933)	mdm4 (ENSELUG00000011889)	myog (ENSELUG00000011859) ##22	ppfia4 (ENSELUG00000011814) ##26	tmem183a (ENSELUG00000011742)	tfeb (ENSELUG00000011723)	ENSELUG00000011713	foxp4 (ENSELUG00000011699)	tas1r3 (ENSELUG00000011677)	errfi1a (ENSELUG00000000418)	mrps16 (ENSELUG00000031976)	pax7a (ENSELUG00000001415)	ENSELUG00000034266	park7 (ENSELUG00000011551)	KCNAB2 (ENSELUG00000011457)	MEGF6 (ENSELUG00000011373)	akr7a3 (ENSELUG00000011168)	mrto4 (ENSELUG00000026390)
Acanthomorphata	ANCESTRAL SPECIES	6										ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Euacanthomorphacea	ANCESTRAL SPECIES	1	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Percomorphaceae	ANCESTRAL SPECIES	1	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Tiger tail seahorse	MODERN SPECIES	295	ENSHCOG00000009493	ADORA1 (ENSHCOG00000009476)	ENSHCOG00000009460	gnl3 (ENSHCOG00000009446)	glt8d1 (ENSHCOG00000009430)	spcs1 (ENSHCOG00000009405)	ENSHCOG00000009398	CAMK1 (ENSHCOG00000009384)	ccdc3b (ENSHCOG00000009358)	VAMP3 (ENSHCOG00000009330)	per3 (ENSHCOG00000009320)	mxra8a (ENSHCOG00000009235)	psma5 (ENSHCOG00000009188)	sort1a (ENSHCOG00000009158)	mdm4 (ENSHCOG00000008924)	myog (ENSHCOG00000008900) ##22	ppfia4 (ENSHCOG00000008863) ##26	tmem183a (ENSHCOG00000008410)	tfeb (ENSHCOG00000008379)	ENSHCOG00000008302	foxp4 (ENSHCOG00000008292)	zgc:101564 (ENSHCOG00000008244)	srgap2 (ENSHCOG00000008231)	ikbke (ENSHCOG00000000269)	ENSHCOG00000008167	RASSF5 (ENSHCOG00000008157)	dyrk3 (ENSHCOG00000000733)	MAPKAPK2 (ENSHCOG00000008146)	ENSHCOG00000008112	ENSHCOG00000008078	PRELP (ENSHCOG00000008049)
Percomorphaceae_B	ANCESTRAL SPECIES	3	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Percomorphaceae_C	ANCESTRAL SPECIES	1	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Percomorphaceae_D	ANCESTRAL SPECIES	3	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Carangaria	ANCESTRAL SPECIES	3	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Pleuronectoidei	ANCESTRAL SPECIES	4	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Turbot	MODERN SPECIES	18	ENSSMAG00000035151	ENSSMAG00000006698	ENSSMAG00000026345	gnl3 (ENSSMAG00000006662)	ENSSMAG00000006652	spcs1 (ENSSMAG00000006641)	ENSSMAG00000006628	ENSSMAG00000006586	ENSSMAG00000006610	ENSSMAG00000006551	ccdc3b (ENSSMAG00000006532)	ENSSMAG00000006463	nek4 (ENSSMAG00000006452)	ENSSMAG00000006369	mdm4 (ENSSMAG00000006348)	myog (ENSSMAG00000006335) ##22	ppfia4 (ENSSMAG00000006153) ##26	tmem183a (ENSSMAG00000006126)	tfeb (ENSSMAG00000006104)	ENSSMAG00000021714	foxp4 (ENSSMAG00000006053)	zgc:101564 (ENSSMAG00000006039)	srgap2 (ENSSMAG00000005994)	ikbke (ENSSMAG00000005962)	RASSF5 (ENSSMAG00000005835)	dyrk3 (ENSSMAG00000005817)	MAPKAPK2 (ENSSMAG00000005790)	il10 (ENSSMAG00000005780)	il19l (ENSSMAG00000005734)	ENSSMAG00000005725	ENSSMAG00000005718
Tongue sole	MODERN SPECIES	2	ENSCSEG00000004759	tpra1 (ENSCSEG00000004756)	chchd6b (ENSCSEG00000004751)	ENSCSEG00000004739	ENSCSEG00000004737	ENSCSEG00000004725	LSM14B (ENSCSEG00000004722)	ENSCSEG00000004718	ENSCSEG00000004715	bmp7a (ENSCSEG00000004712)	rae1 (ENSCSEG00000004706)	RBM38 (ENSCSEG00000004701)	psma5 (ENSCSEG00000004690)	sort1a (ENSCSEG00000004676)	mdm4 (ENSCSEG00000004669)	myog (ENSCSEG00000004665) ##22	ppfia4 (ENSCSEG00000004589) ##26	tmem183a (ENSCSEG00000004576)	tfeb (ENSCSEG00000004566)	ENSCSEG00000004559	foxp4 (ENSCSEG00000004532)	zgc:101564 (ENSCSEG00000004524)	srgap2 (ENSCSEG00000004520)	ikbke (ENSCSEG00000004513)	RASSF5 (ENSCSEG00000004510)	dyrk3 (ENSCSEG00000004506)	MAPKAPK2 (ENSCSEG00000004500)	il10 (ENSCSEG00000004496)	il19l (ENSCSEG00000004487)	PRELP (ENSCSEG00000004481)	zgc:113307 (ENSCSEG00000004476)
Carangaria_A	ANCESTRAL SPECIES	7	ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Seriola	ANCESTRAL SPECIES	10	ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Greater amberjack	MODERN SPECIES	37	ADORA1 (ENSSDUG00000000936)	ENSSDUG00000000955	gnl3 (ENSSDUG00000000972)	glt8d1 (ENSSDUG00000001010)	spcs1 (ENSSDUG00000001037)	nek4 (ENSSDUG00000001055)	CAMK1 (ENSSDUG00000001078)	ccdc3b (ENSSDUG00000001090)	VAMP3 (ENSSDUG00000001117)	per3 (ENSSDUG00000001160)	mxra8a (ENSSDUG00000001232)	ENSSDUG00000001267	psma5 (ENSSDUG00000001798)	sort1a (ENSSDUG00000001832)	mdm4 (ENSSDUG00000001864)	myog (ENSSDUG00000001886) ##22	ppfia4 (ENSSDUG00000001905) ##26	tmem183a (ENSSDUG00000001970)	tfeb (ENSSDUG00000002007)	ENSSDUG00000002057	foxp4 (ENSSDUG00000002085)	zgc:101564 (ENSSDUG00000002121)	srgap2 (ENSSDUG00000002142)	ikbke (ENSSDUG00000002235)	RASSF5 (ENSSDUG00000002261)	dyrk3 (ENSSDUG00000002282)	MAPKAPK2 (ENSSDUG00000002299)	il10 (ENSSDUG00000002330)	il19l (ENSSDUG00000002357)	PRELP (ENSSDUG00000002392)	zgc:113307 (ENSSDUG00000002418)
Yellowtail amberjack	MODERN SPECIES	3054	ENSSLDG00000008755	ENSSLDG00000008743	gnl3 (ENSSLDG00000008692)	glt8d1 (ENSSLDG00000008675)	spcs1 (ENSSLDG00000008657)	nek4 (ENSSLDG00000008613)	CAMK1 (ENSSLDG00000008546)	ccdc3b (ENSSLDG00000008516)	VAMP3 (ENSSLDG00000008498)	per3 (ENSSLDG00000008423)	ENSSLDG00000007706	mxra8a (ENSSLDG00000007536)	psma5 (ENSSLDG00000007517)	sort1a (ENSSLDG00000007421)	mdm4 (ENSSLDG00000007382)	myog (ENSSLDG00000007368) ##22	ppfia4 (ENSSLDG00000007292) ##26	tmem183a (ENSSLDG00000007235)	tfeb (ENSSLDG00000007182)	ENSSLDG00000007159	ENSSLDG00000007124	ENSSLDG00000007107	zgc:101564 (ENSSLDG00000007088)	srgap2 (ENSSLDG00000007036)	ikbke (ENSSLDG00000006734)	RASSF5 (ENSSLDG00000006640)	dyrk3 (ENSSLDG00000006612)	MAPKAPK2 (ENSSLDG00000006571)	il10 (ENSSLDG00000006467)	il19l (ENSSLDG00000006451)	PRELP (ENSSLDG00000006430)
Barramundi perch	MODERN SPECIES	339	cpne5b (ENSLCAG00010011727)	ADORA1 (ENSLCAG00010011799)	ENSLCAG00010011801	gnl3 (ENSLCAG00010011811)	glt8d1 (ENSLCAG00010011841)	spcs1 (ENSLCAG00010011846)	nek4 (ENSLCAG00010011854)	CAMK1 (ENSLCAG00010011878)	ccdc3b (ENSLCAG00010011904)	VAMP3 (ENSLCAG00010011911)	per3 (ENSLCAG00010011922)	mxra8a (ENSLCAG00010011952)	psma5 (ENSLCAG00010011958)	sort1a (ENSLCAG00010011979)	mdm4 (ENSLCAG00010011986)	myog (ENSLCAG00010011991) ##22	ppfia4 (ENSLCAG00010012005) ##26	tmem183a (ENSLCAG00010012015)	tfeb (ENSLCAG00010012023)	ENSLCAG00010012034
Anabantaria	ANCESTRAL SPECIES		ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Zig-zag eel	MODERN SPECIES	19	ENSMAMG00000008927	ENSMAMG00000028498	gnl3 (ENSMAMG00000008904)	glt8d1 (ENSMAMG00000008882)	spcs1 (ENSMAMG00000008837)	nek4 (ENSMAMG00000008810)	ENSMAMG00000008750	ccdc3b (ENSMAMG00000008720)	ENSMAMG00000025420	ENSMAMG00000008565	ENSMAMG00000008529	ENSMAMG00000008487	ENSMAMG00000008466	ENSMAMG00000008446	mdm4 (ENSMAMG00000008432)	myog (ENSMAMG00000008419) ##22	ppfia4 (ENSMAMG00000008339) ##26	tmem183a (ENSMAMG00000008297)	tfeb (ENSMAMG00000008271)	ENSMAMG00000008248	foxp4 (ENSMAMG00000008161)	zgc:101564 (ENSMAMG00000008142)	srgap2 (ENSMAMG00000008035)	ikbke (ENSMAMG00000007952)	RASSF5 (ENSMAMG00000007930)	dyrk3 (ENSMAMG00000007908)	MAPKAPK2 (ENSMAMG00000007885)	il10 (ENSMAMG00000007873)	il19l (ENSMAMG00000007852)	ENSMAMG00000007840	zgc:113307 (ENSMAMG00000007819)
Anabantoidei	ANCESTRAL SPECIES	1	ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Siamese fighting fish	MODERN SPECIES	16	cpne5b (ENSBSLG00000011475)	ADORA1 (ENSBSLG00000012920)	ENSBSLG00000012929	gnl3 (ENSBSLG00000012933)	glt8d1 (ENSBSLG00000012946)	spcs1 (ENSBSLG00000012965)	nek4 (ENSBSLG00000012970)	CAMK1 (ENSBSLG00000012979)	ccdc3b (ENSBSLG00000013025)	VAMP3 (ENSBSLG00000013028)	per3 (ENSBSLG00000013174)	ENSBSLG00000013424	ENSBSLG00000013454	ENSBSLG00000013528	mdm4 (ENSBSLG00000013743)	myog (ENSBSLG00000013757) ##22	ppfia4 (ENSBSLG00000013764) ##26	tmem183a (ENSBSLG00000013881)	tfeb (ENSBSLG00000013908)	ENSBSLG00000013937	foxp4 (ENSBSLG00000013955)	zgc:101564 (ENSBSLG00000014023)	srgap2 (ENSBSLG00000014158)	ikbke (ENSBSLG00000014577)	RASSF5 (ENSBSLG00000014671)	dyrk3 (ENSBSLG00000014754)	MAPKAPK2 (ENSBSLG00000014769)	il10 (ENSBSLG00000015056)	il19l (ENSBSLG00000015178)	PRELP (ENSBSLG00000015257)	ENSBSLG00000015312
Climbing perch	MODERN SPECIES	18	cpne5b (ENSATEG00000024233)	ENSATEG00000024238	ENSATEG00000024241	gnl3 (ENSATEG00000024242)	glt8d1 (ENSATEG00000024247)	spcs1 (ENSATEG00000028514)	nek4 (ENSATEG00000024250)	ENSATEG00000024260	ccdc3b (ENSATEG00000024272)	VAMP3 (ENSATEG00000024274)	ENSATEG00000024276	ENSATEG00000024283	ENSATEG00000024286	ENSATEG00000024289	mdm4 (ENSATEG00000024297)	myog (ENSATEG00000024301) ##22	ppfia4 (ENSATEG00000024310) ##26	tmem183a (ENSATEG00000024316)	tfeb (ENSATEG00000024321)	ENSATEG00000024325	foxp4 (ENSATEG00000024327)	FAM72B (ENSATEG00000026159)	srgap2 (ENSATEG00000024337)	ikbke (ENSATEG00000024348)	RASSF5 (ENSATEG00000024354)	dyrk3 (ENSATEG00000024355)	MAPKAPK2 (ENSATEG00000024357)	il10 (ENSATEG00000024359)	il19l (ENSATEG00000024362)	ENSATEG00000024364	zgc:113307 (ENSATEG00000024366)
Eupercaria	ANCESTRAL SPECIES		ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Tetraodontidae	ANCESTRAL SPECIES	1	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Tetraodon	MODERN SPECIES	2	gnl3 (ENSTNIG00000007263)	glt8d1 (ENSTNIG00000007264)	spcs1 (ENSTNIG00000007265)	ENSTNIG00000007267	nek4 (ENSTNIG00000007266)	CAMK1 (ENSTNIG00000007268)	eef2k (ENSTNIG00000007270)	ENSTNIG00000007269	ccdc3b (ENSTNIG00000007271)	ENSTNIG00000007272	per3 (ENSTNIG00000007273)	mxra8a (ENSTNIG00000007274)	psma5 (ENSTNIG00000007275)	sort1a (ENSTNIG00000007276)	mdm4 (ENSTNIG00000007277)	myog (ENSTNIG00000007278) ##22	ppfia4 (ENSTNIG00000007279) ##26	tmem183a (ENSTNIG00000007280)	tfeb (ENSTNIG00000007281)	ENSTNIG00000007282	foxp4 (ENSTNIG00000007283)	zgc:101564 (ENSTNIG00000007284)	srgap2 (ENSTNIG00000007285)	ikbke (ENSTNIG00000007286)	RASSF5 (ENSTNIG00000000937)	dyrk3 (ENSTNIG00000007287)	MAPKAPK2 (ENSTNIG00000007288)	il10 (ENSTNIG00000007289)	il19l (ENSTNIG00000000268)	PRELP (ENSTNIG00000007290)	fmoda (ENSTNIG00000007291)
Fugu	MODERN SPECIES	10	cpne5b (ENSTRUG00000006293)	ADORA1 (ENSTRUG00000005994)	ENSTRUG00000025285	gnl3 (ENSTRUG00000005552)	glt8d1 (ENSTRUG00000005186)	spcs1 (ENSTRUG00000031398)	nek4 (ENSTRUG00000004941)	CAMK1 (ENSTRUG00000004534)	ccdc3b (ENSTRUG00000024925)	vamp3 (ENSTRUG00000032264)	per3 (ENSTRUG00000003219)	mxra8a (ENSTRUG00000002364)	psma5 (ENSTRUG00000001922)	sort1a (ENSTRUG00000001762)	mdm4 (ENSTRUG00000023689)	myog (ENSTRUG00000001200) ##22	ppfia4 (ENSTRUG00000000776) ##26	tmem183a (ENSTRUG00000000580)	tfeb (ENSTRUG00000022428)	ENSTRUG00000032829	foxp4 (ENSTRUG00000000892)	zgc:101564 (ENSTRUG00000001354)	srgap2 (ENSTRUG00000001407)	ikbke (ENSTRUG00000032034)	RASSF5 (ENSTRUG00000029672)	dyrk3 (ENSTRUG00000019715)	MAPKAPK2 (ENSTRUG00000025138)	il10 (ENSTRUG00000019604)	il19l (ENSTRUG00000004610)	PRELP (ENSTRUG00000021776)	zgc:113307 (ENSTRUG00000004773)
Eupecaria_A	ANCESTRAL SPECIES		ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Ballan wrasse	MODERN SPECIES	66	ENSLBEG00000011361	ENSLBEG00000011372	gnl3 (ENSLBEG00000011394)	glt8d1 (ENSLBEG00000011428)	spcs1 (ENSLBEG00000011458)	nek4 (ENSLBEG00000011549)	CAMK1 (ENSLBEG00000011700)	ccdc3b (ENSLBEG00000011735)	ENSLBEG00000011760	per3 (ENSLBEG00000011813)	mxra8a (ENSLBEG00000011870)	psma5 (ENSLBEG00000011899)	sort1a (ENSLBEG00000011925)	mdm4 (ENSLBEG00000011955)	dnali1 (ENSLBEG00000011981)	myog (ENSLBEG00000012020) ##22	ppfia4 (ENSLBEG00000012170) ##26	tmem183a (ENSLBEG00000012342)	tfeb (ENSLBEG00000012390)	ENSLBEG00000012427	foxp4 (ENSLBEG00000012490)	zgc:101564 (ENSLBEG00000012579)	srgap2 (ENSLBEG00000012621)	ikbke (ENSLBEG00000012699)	RASSF5 (ENSLBEG00000012778)	dyrk3 (ENSLBEG00000012817)	MAPKAPK2 (ENSLBEG00000012856)	ENSLBEG00000012892	il10 (ENSLBEG00000012906)	ENSLBEG00000012951	il19l (ENSLBEG00000013083)
Eupecaria_B	ANCESTRAL SPECIES	2	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Eupecaria_C	ANCESTRAL SPECIES		ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a.d	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES		ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00940000157448	ENSGT00390000018321	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a.d	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Large yellow croaker	MODERN SPECIES	478	stab1 (ENSLCRG00005019537)	ccdc71 (ENSLCRG00005019518)	ENSLCRG00005019505	pdhb (ENSLCRG00005019282)	FLNB (ENSLCRG00005009064)	ENSLCRG00005007704	dennd6aa (ENSLCRG00005007493)	ENSLCRG00005007462	ENSLCRG00005007419	per3 (ENSLCRG00005006596)	mxra8a (ENSLCRG00005006508)	mxra8a (ENSLCRG00005006458)	psma5 (ENSLCRG00005006394)	sort1a (ENSLCRG00005006247)	mdm4 (ENSLCRG00005006154)	myog (ENSLCRG00005006143) ##22	ppfia4 (ENSLCRG00005006012) ##26	tmem183a (ENSLCRG00005005924)	tfeb (ENSLCRG00005005908)	ENSLCRG00005005873	foxp4 (ENSLCRG00005005757)	zgc:101564 (ENSLCRG00005005698)	srgap2 (ENSLCRG00005005188)	ikbke (ENSLCRG00005005073)	ENSLCRG00005005033	dyrk3 (ENSLCRG00005005012)	il10 (ENSLCRG00005004999)	MAPKAPK2 (ENSLCRG00005004919)	il19l (ENSLCRG00005004882)	PRELP (ENSLCRG00005004878)	zgc:113307 (ENSLCRG00005004875)
European seabass	MODERN SPECIES	10	ENSDLAG00005018866	ENSDLAG00005034562	ENSDLAG00005034952	ENSDLAG00005018895	nek4 (ENSDLAG00005018948)	spcs1 (ENSDLAG00005018939)	ENSDLAG00005019005	ccdc3b (ENSDLAG00005032781)	ENSDLAG00005030536	ENSDLAG00005020421	ENSDLAG00005020764	ENSDLAG00005020772	ENSDLAG00005020780	ENSDLAG00005020869	ppfia4 (ENSDLAG00005020894) ##26	myog (ENSDLAG00005020877) ##22	tmem183a (ENSDLAG00005021069)	tfeb (ENSDLAG00005000489)	ENSDLAG00005031308	foxp4 (ENSDLAG00005000527)	srgap2 (ENSDLAG00005000574)	zgc:101564 (ENSDLAG00005030586)	ikbke (ENSDLAG00005000629)	RASSF5 (ENSDLAG00005030227)	dyrk3 (ENSDLAG00005000674)	MAPKAPK2 (ENSDLAG00005000688)	il10 (ENSDLAG00005030039)	il19l (ENSDLAG00005000745)	ENSDLAG00005027348	zgc:113307 (ENSDLAG00005000749)	fmoda (ENSDLAG00005000754)
Gilthead seabream	MODERN SPECIES	20	cpne5b (ENSSAUG00010013737)	ADORA1 (ENSSAUG00010013730)	ENSSAUG00010013728	gnl3 (ENSSAUG00010013725)	glt8d1 (ENSSAUG00010013719)	spcs1 (ENSSAUG00010013716)	nek4 (ENSSAUG00010013715)	CAMK1 (ENSSAUG00010011592)	ccdc3b (ENSSAUG00010011556)	VAMP3 (ENSSAUG00010011555)	per3 (ENSSAUG00010011519)	mxra8a (ENSSAUG00010011512)	PSMA5 (ENSSAUG00010011510)	sort1a (ENSSAUG00010010652)	mdm4 (ENSSAUG00010010642)	myog (ENSSAUG00010010641) ##22	ppfia4 (ENSSAUG00010009217) ##26	tmem183a (ENSSAUG00010009160)	tfeb (ENSSAUG00010009155)	ENSSAUG00010009152	foxp4 (ENSSAUG00010008791)	zgc:101564 (ENSSAUG00010008781)	srgap2 (ENSSAUG00010006761)	ikbke (ENSSAUG00010006736)	RASSF5 (ENSSAUG00010006727)	dyrk3 (ENSSAUG00010006725)	MAPKAPK2 (ENSSAUG00010005907)	il10 (ENSSAUG00010005901)	ENSSAUG00010005900	ENSSAUG00010005899	il19l (ENSSAUG00010005898)
Perciformes	ANCESTRAL SPECIES		ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Perciformes_a	ANCESTRAL SPECIES	5	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Pike perch	MODERN SPECIES	11	cpne5b (ENSSLUG00000013499)	ADORA1 (ENSSLUG00000013472)	ENSSLUG00000013469	gnl3 (ENSSLUG00000013454)	glt8d1 (ENSSLUG00000013440)	spcs1 (ENSSLUG00000013429)	nek4 (ENSSLUG00000013427)	CAMK1 (ENSSLUG00000011648)	ccdc3b (ENSSLUG00000011565)	VAMP3 (ENSSLUG00000011560)	per3 (ENSSLUG00000011504)	mxra8a (ENSSLUG00000011487)	psma5 (ENSSLUG00000011478)	sort1a (ENSSLUG00000010239)	mdm4 (ENSSLUG00000010190)	myog (ENSSLUG00000010185) ##22	ppfia4 (ENSSLUG00000007304) ##26	tmem183a (ENSSLUG00000007143)	tfeb (ENSSLUG00000007122)	MDFI (ENSSLUG00000007112)	foxp4 (ENSSLUG00000007010)	zgc:101564 (ENSSLUG00000006977)	srgap2 (ENSSLUG00000006081)	ikbke (ENSSLUG00000006017)	RASSF5 (ENSSLUG00000005998)	dyrk3 (ENSSLUG00000005987)	MAPKAPK2 (ENSSLUG00000005856)	il10 (ENSSLUG00000005822)	il19l (ENSSLUG00000005810)	PRELP (ENSSLUG00000005800)	zgc:113307 (ENSSLUG00000005793)
Channel bull blenny	MODERN SPECIES	19	ENSCGOG00000006495	ADORA1 (ENSCGOG00000006496)	ENSCGOG00000006498	gnl3 (ENSCGOG00000006499)	glt8d1 (ENSCGOG00000006510)	spcs1 (ENSCGOG00000006514)	nek4 (ENSCGOG00000006517)	CAMK1 (ENSCGOG00000006541)	ccdc3b (ENSCGOG00000007905)	VAMP3 (ENSCGOG00000007908)	ENSCGOG00000007911	mxra8a (ENSCGOG00000007918)	psma5 (ENSCGOG00000007933)	sort1a (ENSCGOG00000008072)	mdm4 (ENSCGOG00000008832)	myog (ENSCGOG00000008839) ##22	ppfia4 (ENSCGOG00000009028) ##26	tmem183a (ENSCGOG00000013051)	tfeb (ENSCGOG00000013066)	ENSCGOG00000013080	foxp4 (ENSCGOG00000013098)	zgc:101564 (ENSCGOG00000013705)	srgap2 (ENSCGOG00000013772)	ikbke (ENSCGOG00000015509)	RASSF5 (ENSCGOG00000016026)	dyrk3 (ENSCGOG00000016030)	MAPKAPK2 (ENSCGOG00000016045)	il10 (ENSCGOG00000016824)	il19l (ENSCGOG00000016834)	PRELP (ENSCGOG00000016836)	zgc:113307 (ENSCGOG00000016837)
Cottioidei	ANCESTRAL SPECIES		ENSGT00940000176117	ENSGT00390000018096	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Lumpfish	MODERN SPECIES	20	camk1ga (ENSCLMG00005007289)	ENSCLMG00005007472	ENSCLMG00005007473	G0S2 (ENSCLMG00005007474)	LDLRAD2 (ENSCLMG00005007475)	nampt2 (ENSCLMG00005007487) ##30	ENSCLMG00005008243	ENSCLMG00005008244	fezf2 (ENSCLMG00005008245)	ENSCLMG00005008247	PTPRG (ENSCLMG00005008248)	PTPRG (ENSCLMG00005008250)	ENSCLMG00005008251	psma5 (ENSCLMG00005008252)	mdm4 (ENSCLMG00005008255)	myog (ENSCLMG00005008256) ##22	ENSCLMG00005008257 ##26	ppfia4 (ENSCLMG00005008258) ##26	tmem183a (ENSCLMG00005008259)	tfeb (ENSCLMG00005008260)	MDFI (ENSCLMG00005008261)	foxp4 (ENSCLMG00005008262)	zgc:101564 (ENSCLMG00005008264)	srgap2 (ENSCLMG00005008280)	ikbke (ENSCLMG00005009384)	RASSF5 (ENSCLMG00005009385)	dyrk3 (ENSCLMG00005009386)	MAPKAPK2 (ENSCLMG00005009388)	il10 (ENSCLMG00005009817)	il19l (ENSCLMG00005009818)	PRELP (ENSCLMG00005009820)
Stickleback	MODERN SPECIES	281			ADORA1 (ENSGACG00000000302)	ENSGACG00000000307	gnl3 (ENSGACG00000000309)	glt8d1 (ENSGACG00000000312)	spcs1 (ENSGACG00000000313)	nek4 (ENSGACG00000000316)	CAMK1 (ENSGACG00000000319)	ccdc3b (ENSGACG00000000327)	VAMP3 (ENSGACG00000000329)	mxra8a (ENSGACG00000000331)	psma5 (ENSGACG00000000332)	sort1a (ENSGACG00000000340)	mdm4 (ENSGACG00000000347)	myog (ENSGACG00000000349) ##22	ppfia4 (ENSGACG00000000353) ##26	tmem183a (ENSGACG00000000357)	tfeb (ENSGACG00000000364)	foxp4 (ENSGACG00000000367)	zgc:101564 (ENSGACG00000000371)	srgap2 (ENSGACG00000000374)	ENSGACG00000000375	ikbke (ENSGACG00000000376)	RASSF5 (ENSGACG00000000383)	dyrk3 (ENSGACG00000000385)	MAPKAPK2 (ENSGACG00000000388)	il19l (ENSGACG00000000393)	PRELP (ENSGACG00000000397)	fmoda (ENSGACG00000000399)	slc6a14 (ENSGACG00000000404)
Ovalentaria	ANCESTRAL SPECIES	2	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Ovalentaria_B	ANCESTRAL SPECIES	5	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Cichlidae	ANCESTRAL SPECIES	1	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	4	ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	2	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.b	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Haplochromini	ANCESTRAL SPECIES	1	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320.s	ENSGT00940000158320.t	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.b	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Burton s mouthbrooder	MODERN SPECIES	336										VAMP3 (ENSHBUG00000006641)	per3 (ENSHBUG00000006626)	mxra8a (ENSHBUG00000006613)	psma5 (ENSHBUG00000006595)	sort1a (ENSHBUG00000006537)	mdm4 (ENSHBUG00000006517)	myog (ENSHBUG00000006286) ##22	ppfia4 (ENSHBUG00000006490) ##26	tmem183a (ENSHBUG00000006273)	tfeb (ENSHBUG00000006246)	ENSHBUG00000006234	foxp4 (ENSHBUG00000006218)	zgc:101564 (ENSHBUG00000006175)	srgap2 (ENSHBUG00000006152)	ikbke (ENSHBUG00000006077)	RASSF5 (ENSHBUG00000006052)	dyrk3 (ENSHBUG00000006022)	MAPKAPK2 (ENSHBUG00000005997)	il10 (ENSHBUG00000000148)	il19l (ENSHBUG00000005950)	PRELP (ENSHBUG00000005923)	zgc:113307 (ENSHBUG00000005880)
Haplochromini_A	ANCESTRAL SPECIES		ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320.s	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.b	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a.e.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
P. nyererei	MODERN SPECIES	387										VAMP3 (ENSPNYG00000017682)	per3 (ENSPNYG00000017700)	mxra8a (ENSPNYG00000017762)	psma5 (ENSPNYG00000017784)	sort1a (ENSPNYG00000017828)	mdm4 (ENSPNYG00000017875)	myog (ENSPNYG00000017885) ##22	ppfia4 (ENSPNYG00000017895) ##26	tmem183a (ENSPNYG00000017953)	tfeb (ENSPNYG00000017988)	ENSPNYG00000018002	foxp4 (ENSPNYG00000018024)	zgc:101564 (ENSPNYG00000018077)	srgap2 (ENSPNYG00000018123)	ikbke (ENSPNYG00000018221)	RASSF5 (ENSPNYG00000018249)	dyrk3 (ENSPNYG00000018269)	MAPKAPK2 (ENSPNYG00000018290)	il10 (ENSPNYG00000018336)	il19l (ENSPNYG00000018459)	PRELP (ENSPNYG00000018486)	zgc:113307 (ENSPNYG00000018506)
Haplochromini_B	ANCESTRAL SPECIES		ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320.s	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.b	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a.e.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Eastern happy	MODERN SPECIES	17	cpne5b (ENSACLG00000007450)	ADORA1 (ENSACLG00000007432)	ENSACLG00000007425	gnl3 (ENSACLG00000007381)	glt8d1 (ENSACLG00000007359)	spcs1 (ENSACLG00000007351)	nek4 (ENSACLG00000007334)	CAMK1 (ENSACLG00000007267)	ccdc3b (ENSACLG00000007260)	taar10a (ENSACLG00000007248)	VAMP3 (ENSACLG00000006583)	per3 (ENSACLG00000006505)	mxra8a (ENSACLG00000006486)	sort1a (ENSACLG00000006404)	mdm4 (ENSACLG00000006393)	myog (ENSACLG00000006387) ##22	ENSACLG00000006381	ppfia4 (ENSACLG00000006353) ##26	tmem183a (ENSACLG00000006332)	tfeb (ENSACLG00000006320)	ENSACLG00000006308	foxp4 (ENSACLG00000006260)	zgc:101564 (ENSACLG00000005692)	srgap2 (ENSACLG00000005589)	ikbke (ENSACLG00000005565)	RASSF5 (ENSACLG00000005550)	dyrk3 (ENSACLG00000005527)	MAPKAPK2 (ENSACLG00000005513)	il10 (ENSACLG00000005426)	il19l (ENSACLG00000005373)	PRELP (ENSACLG00000005360)
Zebra mbuna	MODERN SPECIES	1108	DNAJC16 (ENSMZEG00005026997)	b3galt6 (ENSMZEG00005026998)	tmem167b (ENSMZEG00005026999)	ENSMZEG00005027000	MAPK14 (ENSMZEG00005027001)	srpk1b (ENSMZEG00005000055)	LHFPL5 (ENSMZEG00005000078)	ENSMZEG00005000090	VAMP3 (ENSMZEG00005000145)	ENSMZEG00005000184	ENSMZEG00005000256	mxra8a (ENSMZEG00005000310)	psma5 (ENSMZEG00005000324)	sort1a (ENSMZEG00005000388)	mdm4 (ENSMZEG00005000402)	myog (ENSMZEG00005000620) ##22	ppfia4 (ENSMZEG00005000426) ##26	tmem183a (ENSMZEG00005000632)	tfeb (ENSMZEG00005000676)	ENSMZEG00005000691	foxp4 (ENSMZEG00005000699)	zgc:101564 (ENSMZEG00005000767)	srgap2 (ENSMZEG00005000788)	ikbke (ENSMZEG00005000873)	RASSF5 (ENSMZEG00005000891)	dyrk3 (ENSMZEG00005000920)	MAPKAPK2 (ENSMZEG00005000948)	il10 (ENSMZEG00005000985)	il19l (ENSMZEG00005001009)	PRELP (ENSMZEG00005001079)	zgc:113307 (ENSMZEG00005001109)
Lyretail cichlid	MODERN SPECIES	296	ADORA1 (ENSNBRG00000013258)	ENSNBRG00000013246	gnl3 (ENSNBRG00000013161)	glt8d1 (ENSNBRG00000013111)	spcs1 (ENSNBRG00000013100)	ENSNBRG00000013089	CAMK1 (ENSNBRG00000013059)	ccdc3b (ENSNBRG00000013033)	TAAR1 (ENSNBRG00000013018)	VAMP3 (ENSNBRG00000012994)	per3 (ENSNBRG00000012934)	mxra8a (ENSNBRG00000012907)	psma5 (ENSNBRG00000012888)	sort1a (ENSNBRG00000012736)	mdm4 (ENSNBRG00000012687)	myog (ENSNBRG00000012677) ##22	ppfia4 (ENSNBRG00000012612) ##26	tmem183a (ENSNBRG00000012585)	tfeb (ENSNBRG00000012563)	ENSNBRG00000012543	foxp4 (ENSNBRG00000012513)	zgc:101564 (ENSNBRG00000012497)	srgap2 (ENSNBRG00000012452)	ikbke (ENSNBRG00000012388)	RASSF5 (ENSNBRG00000012373)	dyrk3 (ENSNBRG00000012352)	MAPKAPK2 (ENSNBRG00000012311)	il10 (ENSNBRG00000012218)	il19l (ENSNBRG00000012163)	PRELP (ENSNBRG00000012140)	zgc:113307 (ENSNBRG00000012131)
Nile tilapia	MODERN SPECIES	17	ADORA1 (ENSONIG00000031348)	ENSONIG00000040241	ENSONIG00000019339	gnl3 (ENSONIG00000019335)	glt8d1 (ENSONIG00000019334)	spcs1 (ENSONIG00000030499)	nek4 (ENSONIG00000019332)	CAMK1 (ENSONIG00000019329)	ccdc3b (ENSONIG00000019327)	VAMP3 (ENSONIG00000019326)	per3 (ENSONIG00000019320)	mxra8a (ENSONIG00000019318)	psma5 (ENSONIG00000019317)	sort1a (ENSONIG00000019316)	mdm4 (ENSONIG00000019315)	myog (ENSONIG00000027855) ##22	ppfia4 (ENSONIG00000019308) ##26	tmem183a (ENSONIG00000019307)	tfeb (ENSONIG00000019306)	ENSONIG00000019305	foxp4 (ENSONIG00000019299)	zgc:101564 (ENSONIG00000019298)	srgap2 (ENSONIG00000019295)	ikbke (ENSONIG00000019294)	RASSF5 (ENSONIG00000040816)	dyrk3 (ENSONIG00000034879)	ENSONIG00000029186	MAPKAPK2 (ENSONIG00000019291)	ENSONIG00000019290	il19l (ENSONIG00000019288)	PRELP (ENSONIG00000019287)
Midas cichlid	MODERN SPECIES	887					gnl3 (ENSACIG00000000545)	glt8d1 (ENSACIG00000000509)	spcs1 (ENSACIG00000000492)	ENSACIG00000000483	CAMK1 (ENSACIG00000000448)	ccdc3b (ENSACIG00000000421)	VAMP3 (ENSACIG00000000387)	per3 (ENSACIG00000000318)	mxra8a (ENSACIG00000000296)	psma5 (ENSACIG00000000259)	mdm4 (ENSACIG00000000179)	myog (ENSACIG00000023192) ##22	ENSACIG00000023173 ##26	ENSACIG00000023168 ##26	tmem183a (ENSACIG00000023158)	tfeb (ENSACIG00000023140)	MDFI (ENSACIG00000023131)	foxp4 (ENSACIG00000023116)	zgc:101564 (ENSACIG00000023107)	srgap2 (ENSACIG00000023096)	ikbke (ENSACIG00000023082)	RASSF5 (ENSACIG00000023070)	dyrk3 (ENSACIG00000023063)	MAPKAPK2 (ENSACIG00000023055)	il10 (ENSACIG00000022987)	il19l (ENSACIG00000022955)	PRELP (ENSACIG00000022946)
Pomacentridae	ANCESTRAL SPECIES	3	ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b.c	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Bicolor damselfish	MODERN SPECIES	51										VAMP3 (ENSSPAG00000009474)	per3 (ENSSPAG00000009502)	mxra8a (ENSSPAG00000009527)	psma5 (ENSSPAG00000009557)	sort1a (ENSSPAG00000009604)	mdm4 (ENSSPAG00000009628)	myog (ENSSPAG00000009642) ##22	ppfia4 (ENSSPAG00000009652) ##26	tmem183a (ENSSPAG00000009725)
Pomacentridae_A	ANCESTRAL SPECIES	2	ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b.c	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Spiny chromis	MODERN SPECIES	596								CAMK1 (ENSAPOG00000022276)	ccdc3b (ENSAPOG00000022227)	ENSAPOG00000022197	per3 (ENSAPOG00000022163)	mxra8a (ENSAPOG00000022083)	psma5 (ENSAPOG00000022059)	sort1a (ENSAPOG00000022011)	mdm4 (ENSAPOG00000000626)	myog (ENSAPOG00000021964) ##22	ppfia4 (ENSAPOG00000021945) ##26	tmem183a (ENSAPOG00000021785)	tfeb (ENSAPOG00000021734)	MDFI (ENSAPOG00000021684)
Amphiprion	ANCESTRAL SPECIES	11	ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b.c	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Orange clownfish	MODERN SPECIES	20	cpne5b (ENSAPEG00000006049)	ADORA1 (ENSAPEG00000006116)	ENSAPEG00000006135	gnl3 (ENSAPEG00000006146)	glt8d1 (ENSAPEG00000006167)	spcs1 (ENSAPEG00000006221)	nek4 (ENSAPEG00000006227)	CAMK1 (ENSAPEG00000006241)	ccdc3b (ENSAPEG00000006290)	VAMP3 (ENSAPEG00000006319)	per3 (ENSAPEG00000006356)	mxra8a (ENSAPEG00000006423)	psma5 (ENSAPEG00000006452)	sort1a (ENSAPEG00000006490)	mdm4 (ENSAPEG00000006515)	myog (ENSAPEG00000006539) ##22	ppfia4 (ENSAPEG00000006718) ##26	tmem183a (ENSAPEG00000006892)	tfeb (ENSAPEG00000006967)	MDFI (ENSAPEG00000006973)	foxp4 (ENSAPEG00000006985)	zgc:101564 (ENSAPEG00000007054)	srgap2 (ENSAPEG00000007068)	ikbke (ENSAPEG00000007148)	RASSF5 (ENSAPEG00000007173)	dyrk3 (ENSAPEG00000007196)	MAPKAPK2 (ENSAPEG00000007249)	il10 (ENSAPEG00000007315)	il19l (ENSAPEG00000007338)	PRELP (ENSAPEG00000007364)	zgc:113307 (ENSAPEG00000007379)
Clown anemonefish	MODERN SPECIES	3230	ADORA1 (ENSAOCG00000000798)	ENSAOCG00000012825	ENSAOCG00000012834	gnl3 (ENSAOCG00000012879)	glt8d1 (ENSAOCG00000012914)	spcs1 (ENSAOCG00000012925)	nek4 (ENSAOCG00000002639)	CAMK1 (ENSAOCG00000013092)	ccdc3b (ENSAOCG00000013108)	VAMP3 (ENSAOCG00000013133)	per3 (ENSAOCG00000013152)	mxra8a (ENSAOCG00000013171)	psma5 (ENSAOCG00000013219)	sort1a (ENSAOCG00000013279)	mdm4 (ENSAOCG00000013299)	myog (ENSAOCG00000013517) ##22	ppfia4 (ENSAOCG00000013765) ##26	tmem183a (ENSAOCG00000000870)	tfeb (ENSAOCG00000013898)
Atherinomorphae	ANCESTRAL SPECIES	2	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00390000014429.a	ENSGT00940000156378.a.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT01030000234563.a.a.c.b.b	ENSGT00550000074958	ENSGT00390000001509.a	ENSGT00940000160817	ENSGT00940000158192	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Cyprinodontiformes	ANCESTRAL SPECIES	2	ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00390000014429.a	ENSGT00940000156378.a.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT01030000234563.a.a.c.b.b	ENSGT00550000074958	ENSGT00390000001509.a	ENSGT00940000160817	ENSGT00940000158192	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Aplocheiloidei	ANCESTRAL SPECIES	12	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00390000014429.a	ENSGT00940000156378.a.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT01030000234563.a.a.c.b.b	ENSGT00550000074958	ENSGT00390000001509.a	ENSGT00940000160817	ENSGT00940000158370	ENSGT00940000158192	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Mangrove rivulus	MODERN SPECIES	34														VAMP3 (ENSKMAG00000013989)	mdm4 (ENSKMAG00000014006)	myog (ENSKMAG00000014034) ##22	ppfia4 (ENSKMAG00000014141) ##26	tmem183a (ENSKMAG00000014277)	tfeb (ENSKMAG00000014324)	ENSKMAG00000014392	foxp4 (ENSKMAG00000014437)	zgc:101564 (ENSKMAG00000014499)	srgap2 (ENSKMAG00000014552)	ikbke (ENSKMAG00000014649)	RASSF5 (ENSKMAG00000014719)	dyrk3 (ENSKMAG00000014763)	MAPKAPK2 (ENSKMAG00000014799)	il10 (ENSKMAG00000014846)	il19l (ENSKMAG00000014858)	PRELP (ENSKMAG00000014868)	zgc:113307 (ENSKMAG00000014890)
Turquoise killifish	MODERN SPECIES	1619	cpne5b (ENSNFUG00015012859)	ENSNFUG00015013766	ADORA1 (ENSNFUG00015013772)	Nfu_g_1_021434 (ENSNFUG00015013782)	ccdc3b (ENSNFUG00015013787)	CAMK1 (ENSNFUG00015013872)	GNL3 (ENSNFUG00015015382)	GLT8D1 (ENSNFUG00015015396)	SPCS1 (ENSNFUG00015015426)	nek4 (ENSNFUG00015015439)	PSMA5 (ENSNFUG00015015714)	MXRA8A (ENSNFUG00015015730)	PER3 (ENSNFUG00015015748)	ENSNFUG00015015841	MDM4 (ENSNFUG00015015846)	myog (ENSNFUG00015015851) ##22	PPFIA4 (ENSNFUG00015016044) ##26	tmem183a (ENSNFUG00015019908)	tfeb (ENSNFUG00015019917)	ENSNFUG00015020001	foxp4 (ENSNFUG00015020011)	ENSNFUG00015020049	FAM72B (ENSNFUG00015020052)	srgap2 (ENSNFUG00015020072)	IKBKE (ENSNFUG00015020163)	CR848745.1 (ENSNFUG00015020176)	DYRK3 (ENSNFUG00015020182)	MAPKAPK2 (ENSNFUG00015020201)	ENSNFUG00015020261	ENSNFUG00015020263	il10 (ENSNFUG00015020266)
Cyprinodontoidei	ANCESTRAL SPECIES	4	ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00390000014429.a	ENSGT00940000156378.a.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT01030000234563.a.a.c.b.b	ENSGT00550000074958	ENSGT00390000001509.a	ENSGT00940000160817	ENSGT00940000158192	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
NAME_4	ANCESTRAL SPECIES	7	ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00390000014429.a	ENSGT00940000156378.a.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT01030000234563.a.a.c.b.b	ENSGT00550000074958	ENSGT00390000001509.a	ENSGT00940000160817	ENSGT00940000158192	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Sheepshead minnow	MODERN SPECIES	184					DNAJC16 (ENSCVAG00000006371)	cdab (ENSCVAG00000006341)	ENSCVAG00000006309	ENSCVAG00000006301	camk2n1 (ENSCVAG00000006289)	sort1a (ENSCVAG00000006274)	psma5 (ENSCVAG00000005974)	mxra8a (ENSCVAG00000000170)	per3 (ENSCVAG00000005951)	VAMP2 (ENSCVAG00000005728)	mdm4 (ENSCVAG00000005687)	myog (ENSCVAG00000005623) ##22	ppfia4 (ENSCVAG00000005608) ##26	tmem183a (ENSCVAG00000005506)	tfeb (ENSCVAG00000005477)	ENSCVAG00000005446	foxp4 (ENSCVAG00000005430)	zgc:101564 (ENSCVAG00000005329)	srgap2 (ENSCVAG00000005306)	ikbke (ENSCVAG00000005258)	RASSF5 (ENSCVAG00000005083)	dyrk3 (ENSCVAG00000005077)	MAPKAPK2 (ENSCVAG00000005043)	il10 (ENSCVAG00000005005)	il19l (ENSCVAG00000004879)	PRELP (ENSCVAG00000004858)	ENSCVAG00000004847
Mummichog	MODERN SPECIES	2339	ADORA1 (ENSFHEG00000020831)	ENSFHEG00000020844	ENSFHEG00000020854	ccdc3b (ENSFHEG00000020871)	CAMK1 (ENSFHEG00000020888)	gnl3 (ENSFHEG00000020897)	glt8d1 (ENSFHEG00000020930)	spcs1 (ENSFHEG00000020950)	nek4 (ENSFHEG00000020962)	sort1a (ENSFHEG00000020977)	psma5 (ENSFHEG00000021012)	mxra8a (ENSFHEG00000021039)	per3 (ENSFHEG00000021062)	vamp3 (ENSFHEG00000021090)	mdm4 (ENSFHEG00000021096)	myog (ENSFHEG00000021108) ##22	ppfia4 (ENSFHEG00000021180) ##26	tmem183a (ENSFHEG00000021233)	tfeb (ENSFHEG00000021270)	ENSFHEG00000021290	foxp4 (ENSFHEG00000021374)	zgc:101564 (ENSFHEG00000021395)	srgap2 (ENSFHEG00000021464)	ikbke (ENSFHEG00000021483)	ENSFHEG00000021488	RASSF5 (ENSFHEG00000021535)	dyrk3 (ENSFHEG00000021583)	MAPKAPK2 (ENSFHEG00000021600)	il10 (ENSFHEG00000021614)	il19l (ENSFHEG00000021620)	PRELP (ENSFHEG00000021626)
Poeciliinae	ANCESTRAL SPECIES	4	ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00390000014429.a	ENSGT00940000156378.a.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT01030000234563.a.a.c.b.b	ENSGT00550000074958	ENSGT00390000001509.a	ENSGT00940000160817	ENSGT00940000158192	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Poecilia	ANCESTRAL SPECIES	20	ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00390000014429.a	ENSGT00940000156378.a.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT01030000234563.a.a.c.b.b	ENSGT00550000074958	ENSGT00390000001509.a	ENSGT00940000160817	ENSGT00940000158192	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
NAME_6	ANCESTRAL SPECIES	10	ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00390000014429.a	ENSGT00940000156378.a.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT01030000234563.a.a.c.b.b	ENSGT00550000074958	ENSGT00390000001509.a	ENSGT00940000160817	ENSGT00940000158192	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Sailfin molly	MODERN SPECIES	376			ENSPLAG00000016931	ccdc3b (ENSPLAG00000016941)	CAMK1 (ENSPLAG00000016964)	gnl3 (ENSPLAG00000016968)	glt8d1 (ENSPLAG00000016982)	spcs1 (ENSPLAG00000017002)	nek4 (ENSPLAG00000000638)	sort1a (ENSPLAG00000017018)	psma5 (ENSPLAG00000017066)	mxra8a (ENSPLAG00000017086)	per3 (ENSPLAG00000017164)	VAMP3 (ENSPLAG00000017179)	mdm4 (ENSPLAG00000017184)	myog (ENSPLAG00000017307) ##22	ppfia4 (ENSPLAG00000017371) ##26	tmem183a (ENSPLAG00000017402)
Amazon molly	MODERN SPECIES	374	ENSPFOG00000017684	ADORA1 (ENSPFOG00000017673)	ENSPFOG00000017668	ccdc3b (ENSPFOG00000017664)	CAMK1 (ENSPFOG00000017643)	gnl3 (ENSPFOG00000017601)	glt8d1 (ENSPFOG00000017573)	spcs1 (ENSPFOG00000017557)	nek4 (ENSPFOG00000017539)	sort1a (ENSPFOG00000017495)	psma5 (ENSPFOG00000017468)	mxra8a (ENSPFOG00000017431)	per3 (ENSPFOG00000017337)	VAMP3 (ENSPFOG00000022583)	mdm4 (ENSPFOG00000017284)	myog (ENSPFOG00000017279) ##22	ENSPFOG00000024758	ppfia4 (ENSPFOG00000017103) ##26	tmem183a (ENSPFOG00000017047)	tfeb (ENSPFOG00000017022)	ENSPFOG00000017016	foxp4 (ENSPFOG00000016922)	zgc:101564 (ENSPFOG00000016903)	srgap2 (ENSPFOG00000016791)	ikbke (ENSPFOG00000016717)	RASSF5 (ENSPFOG00000016686)	dyrk3 (ENSPFOG00000016653)	MAPKAPK2 (ENSPFOG00000016614)	il10 (ENSPFOG00000016593)	il19l (ENSPFOG00000016582)	PRELP (ENSPFOG00000022192)
Guppy	MODERN SPECIES	457	cpne5b (ENSPREG00000002752)	ADORA1 (ENSPREG00000002820)	ENSPREG00000002836	ccdc3b (ENSPREG00000002846)	CAMK1 (ENSPREG00000002868)	gnl3 (ENSPREG00000002909)	glt8d1 (ENSPREG00000002996)	spcs1 (ENSPREG00000003077)	nek4 (ENSPREG00000003144)	sort1a (ENSPREG00000003169)	psma5 (ENSPREG00000003192)	mxra8a (ENSPREG00000003226)	per3 (ENSPREG00000003263)	ENSPREG00000003327	mdm4 (ENSPREG00000003345)	myog (ENSPREG00000003370) ##22	ppfia4 (ENSPREG00000003395) ##26	tmem183a (ENSPREG00000003493)	tfeb (ENSPREG00000003528)	ENSPREG00000003563	ENSPREG00000003572	ENSPREG00000003583	zgc:101564 (ENSPREG00000003590)	srgap2 (ENSPREG00000003630)	ikbke (ENSPREG00000003716)	RASSF5 (ENSPREG00000003780)	dyrk3 (ENSPREG00000003825)	MAPKAPK2 (ENSPREG00000003843)	il10 (ENSPREG00000003878)	il19l (ENSPREG00000003885)	PRELP (ENSPREG00000003895)
Platyfish	MODERN SPECIES	12	cpne5b (ENSXMAG00000004086)	ADORA1 (ENSXMAG00000004078)	ENSXMAG00000027348	ccdc3b (ENSXMAG00000004074)	CAMK1 (ENSXMAG00000004063)	gnl3 (ENSXMAG00000022565)	glt8d1 (ENSXMAG00000004038)	spcs1 (ENSXMAG00000004036)	nek4 (ENSXMAG00000004025)	sort1a (ENSXMAG00000003480)	psma5 (ENSXMAG00000004010)	mxra8a (ENSXMAG00000004007)	per3 (ENSXMAG00000003961)	VAMP3 (ENSXMAG00000003956)	mdm4 (ENSXMAG00000024253)	myog (ENSXMAG00000003931) ##22	ppfia4 (ENSXMAG00000003883) ##26	tmem183a (ENSXMAG00000003874)	tfeb (ENSXMAG00000025996)	ENSXMAG00000022808	ENSXMAG00000003824	ENSXMAG00000027610	ENSXMAG00000028454	zgc:101564 (ENSXMAG00000025979)	srgap2 (ENSXMAG00000003785)	ikbke (ENSXMAG00000003768)	RASSF5 (ENSXMAG00000024018)	dyrk3 (ENSXMAG00000003761)	MAPKAPK2 (ENSXMAG00000027042)	il10 (ENSXMAG00000003745)	il19l (ENSXMAG00000028104)
Oryzias	ANCESTRAL SPECIES	1	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00390000014429.a	ENSGT00940000156378.a.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT01030000234563.a.a.c.b.b	ENSGT00550000074958	ENSGT00390000001509.a	ENSGT00940000160817	ENSGT00940000158192	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Oryzias_b	ANCESTRAL SPECIES	3	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00390000014429.a	ENSGT00940000156378.a.a	ENSGT00940000165627.a.b.c.b.b.b.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT01030000234563.a.a.c.b.b	ENSGT00550000074958	ENSGT00390000001509.a	ENSGT00940000160817	ENSGT00940000158192	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Javanese ricefish	MODERN SPECIES	19	ube2j2 (ENSOJAG00000013879)	ADORA1 (ENSOJAG00000013961)	ENSOJAG00000013968	ccdc3b (ENSOJAG00000013973)	CAMK1 (ENSOJAG00000014013)	ENSOJAG00000014280	spcs1 (ENSOJAG00000014391)	nek4 (ENSOJAG00000014406)	sort1a (ENSOJAG00000014426)	psma5 (ENSOJAG00000014989)	mxra8a (ENSOJAG00000015021)	ENSOJAG00000015037	per3 (ENSOJAG00000015067)	ENSOJAG00000015432	mdm4 (ENSOJAG00000015456)	myog (ENSOJAG00000015485) ##22	ppfia4 (ENSOJAG00000015569) ##26	tmem183a (ENSOJAG00000016687)	ENSOJAG00000016725	tfeb (ENSOJAG00000016745)	ENSOJAG00000016752	foxp4 (ENSOJAG00000016774)	zgc:101564 (ENSOJAG00000017005)	srgap2 (ENSOJAG00000017066)	ENSOJAG00000017758	dyrk3 (ENSOJAG00000017770)	MAPKAPK2 (ENSOJAG00000017822)	il10 (ENSOJAG00000018345)	il19l (ENSOJAG00000018351)	PRELP (ENSOJAG00000018362)	zgc:113307 (ENSOJAG00000018386)
Indian medaka	MODERN SPECIES	8	ube2j2 (ENSOMEG00000018693)	acap3b (ENSOMEG00000018838)	PUSL1 (ENSOMEG00000018897)	ENSOMEG00000018914	ddx19b (ENSOMEG00000018968)	camk2n1 (ENSOMEG00000018989)	ENSOMEG00000018994	ENSOMEG00000019034	cdab (ENSOMEG00000019061)	DNAJC16 (ENSOMEG00000019112)	b3galt6 (ENSOMEG00000019126)	ENSOMEG00000019156	per3 (ENSOMEG00000019234)	ENSOMEG00000019257	mdm4 (ENSOMEG00000019280)	myog (ENSOMEG00000019305) ##22	ppfia4 (ENSOMEG00000019395) ##26	tmem183a (ENSOMEG00000019471)	tfeb (ENSOMEG00000019545)	ENSOMEG00000019583	ENSOMEG00000019643	ENSOMEG00000019661	zgc:101564 (ENSOMEG00000019686)	srgap2 (ENSOMEG00000019817)	ikbke (ENSOMEG00000019940)	RASSF5 (ENSOMEG00000019978)	dyrk3 (ENSOMEG00000020002)	MAPKAPK2 (ENSOMEG00000020044)	il10 (ENSOMEG00000020066)	il19l (ENSOMEG00000020107)	PRELP (ENSOMEG00000020149)
Oryzias_a	ANCESTRAL SPECIES	5	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00390000014429.a	ENSGT00940000156378.a.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT01030000234563.a.a.c.b.b	ENSGT00550000074958	ENSGT00390000001509.a	ENSGT00940000160817	ENSGT00940000158192	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Chinese medaka	MODERN SPECIES	12	ENSOSIG00000010917	ADORA1 (ENSOSIG00000010916)	ENSOSIG00000010915	ccdc3b (ENSOSIG00000010914)	CAMK1 (ENSOSIG00000007938)	gnl3 (ENSOSIG00000007891)	glt8d1 (ENSOSIG00000007888)	spcs1 (ENSOSIG00000007887)	nek4 (ENSOSIG00000007886)	sort1a (ENSOSIG00000007705)	psma5 (ENSOSIG00000007696)	mxra8a (ENSOSIG00000007694)	per3 (ENSOSIG00000007670)	vamp3 (ENSOSIG00000007659)	mdm4 (ENSOSIG00000007657)	myog (ENSOSIG00000007631) ##22	ppfia4 (ENSOSIG00000000367) ##26	tmem183a (ENSOSIG00000000213)	tfeb (ENSOSIG00000000208)	ENSOSIG00000000202	foxp4 (ENSOSIG00000000113)	zgc:101564 (ENSOSIG00000000025)
Japanese Medaka HdrR	MODERN SPECIES	19	ADORA1 (ENSORLG00000016055)	ENSORLG00000022900	ccdc3b (ENSORLG00000016046)	CAMK1 (ENSORLG00000016042)	gnl3 (ENSORLG00000016030)	glt8d1 (ENSORLG00000016012)	spcs1 (ENSORLG00000015994)	nek4 (ENSORLG00000015988)	ENSORLG00000015979	psma5 (ENSORLG00000015965)	ENSORLG00000015958	per3 (ENSORLG00000015952)	ENSORLG00000026102	vamp3 (ENSORLG00000015925)	mdm4 (ENSORLG00000015916)	myog (ENSORLG00000015906) ##22	ppfia4 (ENSORLG00000015900) ##26	tmem183a (ENSORLG00000015880)	tfeb (ENSORLG00000015866)	ENSORLG00000021932	ENSORLG00000026008	foxp4 (ENSORLG00000015849)	ENSORLG00000026141	zgc:101564 (ENSORLG00000015806)	srgap2 (ENSORLG00000015797)	ikbke (ENSORLG00000015769)	RASSF5 (ENSORLG00000015763)	dyrk3 (ENSORLG00000015754)	MAPKAPK2 (ENSORLG00000015745)	il10 (ENSORLG00000015724)	ENSORLG00000028038
Pinecone sodierfish	MODERN SPECIES	19	ADORA1 (ENSMMDG00005003348)	ENSMMDG00005003342	gnl3 (ENSMMDG00005003334)	glt8d1 (ENSMMDG00005003330)	spcs1 (ENSMMDG00005003328)	nek4 (ENSMMDG00005003324)	ENSMMDG00005003279	CAMK1 (ENSMMDG00005000734)	ccdc3b (ENSMMDG00005000603)	VAMP3 (ENSMMDG00005000599)	per3 (ENSMMDG00005000381)	mxra8a (ENSMMDG00005000267)	psma5 (ENSMMDG00005000246)	sort1a (ENSMMDG00005000210)	mdm4 (ENSMMDG00005000181)	myog (ENSMMDG00005000153) ##22	ENSMMDG00005000131 ##26	ppfia4 (ENSMMDG00005024120) ##26	tmem183a (ENSMMDG00005024117)	tfeb (ENSMMDG00005024115)	MDFI (ENSMMDG00005024113)	foxp4 (ENSMMDG00005024111)	zgc:101564 (ENSMMDG00005024110)	srgap2 (ENSMMDG00005024103)	ikbke (ENSMMDG00005024087)	RASSF5 (ENSMMDG00005024079)	dyrk3 (ENSMMDG00005024075)	MAPKAPK2 (ENSMMDG00005024061)	ENSMMDG00005024047	il19l (ENSMMDG00005024044)	PRELP (ENSMMDG00005024038)
Osteoglossiformes	ANCESTRAL SPECIES	207															ENSGT01100000263491.a.b.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Asian bonytongue	MODERN SPECIES	11	SLC2A13 (ENSSFOG00015015834)	lrrk2 (ENSSFOG00015015869)	ENSSFOG00015015939	ENSSFOG00015028066	inavab (ENSSFOG00015023494)	GPR25 (ENSSFOG00015023506)	tmem167b (ENSSFOG00015028856)	MAPK14 (ENSSFOG00015023518)	srpk1b (ENSSFOG00015023536)	LHFPL5 (ENSSFOG00015023552)	KIF21B (ENSSFOG00015023566)	cpne5b (ENSSFOG00015023601)	ADORA1 (ENSSFOG00015023604)	ENSSFOG00015027013	ENSSFOG00015023606	myog (ENSSFOG00015023608) ##22	ppfia4 (ENSSFOG00015023639) ##26	tmem183a (ENSSFOG00015023690)	tfeb (ENSSFOG00015023709)	ENSSFOG00015000092	foxp4 (ENSSFOG00015000101)	zgc:101564 (ENSSFOG00015033196)	srgap2 (ENSSFOG00015000246)	ikbke (ENSSFOG00015000369)	RASSF5 (ENSSFOG00015000377)	dyrk3 (ENSSFOG00015032657)	mapkapk2a (ENSSFOG00015000408)	il10 (ENSSFOG00015000464)	il19l (ENSSFOG00015000472)	PRELP (ENSSFOG00015000521)	ENSSFOG00015000527
P. kingsleyae	MODERN SPECIES	274															ENSPKIG00000005164	myog (ENSPKIG00000005145) ##22	ppfia4 (ENSPKIG00000005107) ##26	tmem183a (ENSPKIG00000005053)	tfeb (ENSPKIG00000005002)	MDFI (ENSPKIG00000004974)	foxp4 (ENSPKIG00000004917)	ENSPKIG00000004875	zgc:101564 (ENSPKIG00000004851)	srgap2 (ENSPKIG00000004776)	ikbke (ENSPKIG00000004674)	RASSF5 (ENSPKIG00000004634)	dyrk3 (ENSPKIG00000004611)	mapkapk2a (ENSPKIG00000004557)	il10 (ENSPKIG00000004527)	il19l (ENSPKIG00000004512)	PRELP (ENSPKIG00000004496)
Spotted gar	DUPLICATION
Spotted gar	MODERN SPECIES	666	ENSLOCG00000001786	igf2b (ENSLOCG00000001806)	mrpl23 (ENSLOCG00000001825)	th (ENSLOCG00000001834)	ENSLOCG00000001862	uevld (ENSLOCG00000001881)	spty2d1 (ENSLOCG00000001901)	tmem86a (ENSLOCG00000001930)	IGSF22 (ENSLOCG00000001945)	B4GALNT4 (ENSLOCG00000001959)	ABTB2 (ENSLOCG00000001988)	kcnj11 (ENSLOCG00000002016)	abcc8 (ENSLOCG00000002032)	ush1c (ENSLOCG00000002073)	OTOG (ENSLOCG00000002110)	ENSLOCG00000002142 ##22	zgc:172145 (ENSLOCG00000002153)	MYOD1 (ENSLOCG00000002164) ##22	tnnt3a (ENSLOCG00000002181)	ENSLOCG00000002207	ENSLOCG00000017320	tnni2a.4 (ENSLOCG00000002237)	SYT8 (ENSLOCG00000002263)	ENSLOCG00000002283	ctsd (ENSLOCG00000002297)	ENSLOCG00000002337	drd4a (ENSLOCG00000002345)	deaf1 (ENSLOCG00000002360)	BET1L (ENSLOCG00000002376)	ric8a (ENSLOCG00000002406)	sirt3 (ENSLOCG00000002426)
Spotted gar	MODERN SPECIES	669	ENSLOCG00000017929	slco2b1 (ENSLOCG00000010831)	ENSLOCG00000017927	ora1 (ENSLOCG00000017925)	ENSLOCG00000010826	SLC26A9 (ENSLOCG00000010814)	phtf1 (ENSLOCG00000010802)	ENSLOCG00000010796	ENSLOCG00000010788	pfkfb2a (ENSLOCG00000010773)	yod1 (ENSLOCG00000010760)	ENSLOCG00000010752	dclre1b (ENSLOCG00000010747)	ENSLOCG00000010741	adora1b (ENSLOCG00000010733)	myog (ENSLOCG00000010722) ##22	ppfia4 (ENSLOCG00000010689) ##26	tmem183a (ENSLOCG00000010682)	ENSLOCG00000010674	ENSLOCG00000010670 #37	ENSLOCG00000010662	slc5a8l (ENSLOCG00000010641)	tshba (ENSLOCG00000010628)	slc25a55b (ENSLOCG00000010612)	tspan2a (ENSLOCG00000010592)	ngfb (ENSLOCG00000017923)	KCNA3 (ENSLOCG00000017921)	kcna2b (ENSLOCG00000018069)	KCNA10 (ENSLOCG00000018067)	ENSLOCG00000018065	ENSLOCG00000010576
Sarcopterygii	ANCESTRAL SPECIES	577															ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000170563
Tetrapoda	ANCESTRAL SPECIES	283															ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000170563
Amniota	ANCESTRAL SPECIES	101														ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000170563	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224	ENSGT00730000111186	ENSGT00940000159825	ENSGT00390000017780.f
Sauria	ANCESTRAL SPECIES	47	ENSGT00940000160431	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT00940000159939	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000154563	ENSGT00390000017780.f	ENSGT00940000159825	ENSGT00730000111186	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224	ENSGT00940000158190
Archelosauria	ANCESTRAL SPECIES	22	ENSGT00940000160431	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT00940000159939	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000170563	ENSGT00940000163962	ENSGT00940000158289.b	ENSGT00940000159650	ENSGT00940000154102.a	ENSGT01050000244888.a.b	ENSGT00390000011228.a	ENSGT00940000162196	ENSGT01030000234625.A	ENSGT00940000156861	ENSGT00940000153792.B	ENSGT00940000157493	ENSGT00940000154189.A
Archosauria	ANCESTRAL SPECIES	50	ENSGT00940000160431	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT00940000159939	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000170563	ENSGT00940000163962	ENSGT00940000158289.b	ENSGT00940000159650
Aves	ANCESTRAL SPECIES	25	ENSGT01050000244888.a.b	ENSGT00940000154102.a	ENSGT00730000111186	ENSGT00940000159825	ENSGT00390000017780.f	ENSGT00940000154563	ENSGT00940000167691	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000000819.b	ENSGT00940000162073	ENSGT00940000156735	ENSGT00940000154709.a.a	ENSGT00390000005256	ENSGT01030000234588.b.a	ENSGT00440000039564.a.a	ENSGT00940000156777	ENSGT00940000157067	ENSGT00940000166065	ENSGT00940000157586	ENSGT00940000156637
Neognathae	ANCESTRAL SPECIES	24	ENSGT01050000244888.a.b	ENSGT00940000154102.a	ENSGT00730000111186	ENSGT00940000159825	ENSGT00390000017780.f	ENSGT00940000154563	ENSGT00940000167691	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000000819.b	ENSGT00940000162073	ENSGT00940000156735	ENSGT00940000154709.a.a	ENSGT00390000005256	ENSGT01030000234588.b.a	ENSGT00440000039564.a.a	ENSGT00940000156777	ENSGT00940000157067	ENSGT00940000166065	ENSGT00940000157586	ENSGT00940000156637
Galloanserae	ANCESTRAL SPECIES	28	ENSGT01050000244888.a.b	ENSGT00940000154102.a	ENSGT00730000111186	ENSGT00940000159825	ENSGT00390000017780.f	ENSGT00940000154563	ENSGT00940000167691	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000000819.b	ENSGT00940000162073	ENSGT00940000156735	ENSGT00940000154709.a.a	ENSGT00390000005256	ENSGT01030000234588.b.a	ENSGT00440000039564.a.a	ENSGT00940000156777	ENSGT00940000157067	ENSGT00940000157586	ENSGT00940000156637	ENSGT00940000160431
Phasianidae	ANCESTRAL SPECIES	22	ENSGT00940000154102.a	ENSGT00730000111186	ENSGT00960000187715.b	ENSGT00940000159825	ENSGT00390000017780.f	ENSGT00940000154563	ENSGT00940000167691	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000000819.b	ENSGT00940000162073	ENSGT00940000156735	ENSGT00940000154709.a.a	ENSGT00390000005256	ENSGT01030000234588.b.a	ENSGT00440000039564.a.a	ENSGT00940000156777	ENSGT00940000157067	ENSGT00940000157586	ENSGT00940000156637	ENSGT00940000160431
Japanese quail	MODERN SPECIES	18	INAVA (ENSCJPG00005009068)	SHISA4 (ENSCJPG00005009067)	ENSCJPG00005009066	LMOD1 (ENSCJPG00005009065)	TIMM17A (ENSCJPG00005009064)	ADIPOR1 (ENSCJPG00005009063)	ENSCJPG00005009062	UBE2T (ENSCJPG00005009061)	ENSCJPG00005009060	LRIF1 (ENSCJPG00005009059)	DRAM2 (ENSCJPG00005009058)	CEPT1 (ENSCJPG00005009057)	DENND2D (ENSCJPG00005009056)	MYBPH (ENSCJPG00005009055)	ADORA1 (ENSCJPG00005009054)	MYOG (ENSCJPG00005009052) ##22	PPFIA4 (ENSCJPG00005008004) ##26	TMEM183A (ENSCJPG00005007997)	ENSCJPG00005007996	TMEM9 (ENSCJPG00005007995)	ENSCJPG00005007994	PKP1 (ENSCJPG00005007911)	TNNT2 (ENSCJPG00005007908)	TNNI1 (ENSCJPG00005007907)	PHLDA3 (ENSCJPG00005007906)	CSRP1 (ENSCJPG00005007905)	PPP1R12B (ENSCJPG00005007786)	SYT2 (ENSCJPG00005007448)	NAV1 (ENSCJPG00005007385)	RNPEP (ENSCJPG00005007249)	LZTR1 (ENSCJPG00005007247)
Phasianidae_b	ANCESTRAL SPECIES	22	ENSGT00940000156861	ENSGT00940000154102.a	ENSGT00730000111186	ENSGT00940000159825	ENSGT00390000017780.f	ENSGT00940000154563	ENSGT00940000167691	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000000819.b	ENSGT00940000162073	ENSGT00940000156735	ENSGT00940000154709.a.a	ENSGT00390000005256	ENSGT01030000234588.b.a	ENSGT00440000039564.a.a	ENSGT00940000156777	ENSGT00940000157067	ENSGT00940000157586	ENSGT00940000156637	ENSGT00940000160431
Chicken	MODERN SPECIES	18	ENSGALG00010024718	C26H1orf106 (ENSGALG00010024702)	SHISA4 (ENSGALG00010024683)	LMOD1 (ENSGALG00010024863)	TIMM17B (ENSGALG00010024828)	ADIPOR1 (ENSGALG00010024810)	ENSGALG00010024805	UBE2T (ENSGALG00010024783)	ENSGALG00010024760	LRIF1 (ENSGALG00010024712)	DRAM2 (ENSGALG00010024692)	CEPT1 (ENSGALG00010024627)	DENND2D (ENSGALG00010024608)	MYBPHL (ENSGALG00010024595)	ADORA1 (ENSGALG00010024589)	MYOG (ENSGALG00010025215) ##22	PPFIA4 (ENSGALG00010025188) ##26	TMEM183A (ENSGALG00010025154)	MGAT4C (ENSGALG00010025115)	TMEM9 (ENSGALG00010025044)	ENSGALG00010025003	PKP1 (ENSGALG00010024891)	TNNT2 (ENSGALG00010026743)	LAD1 (ENSGALG00010026638)	TNNI1 (ENSGALG00010026560)	CSRP1 (ENSGALG00010026508)	PPP1R12B (ENSGALG00010026355)	SYT2 (ENSGALG00010026315)	NAV1 (ENSGALG00010026262)	RNPEP (ENSGALG00010026143)	LZTR1 (ENSGALG00010026117)
Turkey	MODERN SPECIES	20	ENSMGAG00000001543	ENSMGAG00000001598	ENSMGAG00000018354	ENSMGAG00000001642	ENSMGAG00000002044	PKP1 (ENSMGAG00000002027)	TNNT2 (ENSMGAG00000001868)	LAD1 (ENSMGAG00000001842)	TNNI1 (ENSMGAG00000001811)	PHLDA3 (ENSMGAG00000021472)	CSRP1 (ENSMGAG00000002016)	ENSMGAG00000002067	ENSMGAG00000002066	ENSMGAG00000002056	ENSMGAG00000002090 ##26	MYOG (ENSMGAG00000002212) ##22	ENSMGAG00000005150	ENSMGAG00000005149	ENSMGAG00000005215	ENSMGAG00000005236	ENSMGAG00000005274	ENSMGAG00000005257	ENSMGAG00000005281	ENSMGAG00000005354	ENSMGAG00000005332	ENSMGAG00000005393	ENSMGAG00000005370	ENSMGAG00000019299	ENSMGAG00000018933
Anatidae	ANCESTRAL SPECIES	38	ENSGT00390000002060	ENSGT00940000157997	ENSGT00390000002376	ENSGT00940000159495	ENSGT00940000164965	ENSGT00940000163644.c	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00940000153835.a.a	ENSGT00470000042297	ENSGT00940000153835.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000000819.b	ENSGT00940000162073	ENSGT00940000156735	ENSGT00940000154709.a.a	ENSGT00390000005256	ENSGT01030000234588.b.a	ENSGT00440000039564.a.a	ENSGT00940000156777	ENSGT00940000157067	ENSGT00940000157586	ENSGT00940000156637	ENSGT00940000160431
Pink-footed goose	MODERN SPECIES	153	MED20 (ENSABRG00000000604)	USP49 (ENSABRG00000000578)	ENSABRG00000000548	FRS3 (ENSABRG00000000531)	ENSABRG00000000514	ENSABRG00000000449	TFEB (ENSABRG00000000425)	MDFI (ENSABRG00000000404)	FOXP4 (ENSABRG00000000369)	ENSABRG00000000347	TREM2 (ENSABRG00000000340)	ENSABRG00000000303	DENND2D (ENSABRG00000000230)	MYBPH (ENSABRG00000000188)	ADORA1 (ENSABRG00000000178)	MYOG (ENSABRG00000000170) ##22	ENSABRG00000000164	PPFIA4 (ENSABRG00000000109) ##26	TMEM183A (ENSABRG00000000101)	ENSABRG00000000098	TMEM9 (ENSABRG00000000096)	ENSABRG00000000085	PKP1 (ENSABRG00000017968)	TNNT2 (ENSABRG00000017950)	LAD1 (ENSABRG00000017940)	TNNI1 (ENSABRG00000017918)	PHLDA3 (ENSABRG00000017905)	CSRP1 (ENSABRG00000017898)	PPP1R12B (ENSABRG00000017893)	SYT2 (ENSABRG00000017886)	NAV1 (ENSABRG00000017875)
Neognathae_b	ANCESTRAL SPECIES	24	ENSGT01050000244888.a.b	ENSGT00940000154102.a	ENSGT00730000111186	ENSGT00940000159825	ENSGT00390000017780.f	ENSGT00940000154563	ENSGT00940000167691	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000000819.b	ENSGT00940000162073	ENSGT00940000156735	ENSGT00940000154709.a.a	ENSGT00390000005256	ENSGT01030000234588.b.a	ENSGT00440000039564.a.a	ENSGT00940000156777	ENSGT00940000157067	ENSGT00940000166065	ENSGT00940000157586	ENSGT00940000156637
Passeriformes	ANCESTRAL SPECIES	21	ENSGT00940000154102.a	ENSGT00730000111186	ENSGT00960000187715	ENSGT00940000159825	ENSGT00390000017780.f	ENSGT00940000154563	ENSGT00940000167691	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000000819.b	ENSGT00940000162073	ENSGT00940000156735	ENSGT00940000154709.a.a	ENSGT00390000005256	ENSGT01030000234588.b.a	ENSGT00440000039564.a.a	ENSGT00940000156777	ENSGT00940000157067	ENSGT00940000166065	ENSGT00940000157586	ENSGT00940000156637
Passeriformes_d	ANCESTRAL SPECIES	21	ENSGT00940000154102.a	ENSGT00730000111186	ENSGT00960000187715	ENSGT00940000159825	ENSGT00390000017780.f	ENSGT00940000154563	ENSGT00940000167691	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000000819.b	ENSGT00940000162073	ENSGT00940000156735	ENSGT00940000154709.a.a	ENSGT00390000005256	ENSGT01030000234588.b.a	ENSGT00440000039564.a.a	ENSGT00940000156777	ENSGT00940000157067	ENSGT00940000166065	ENSGT00940000157586	ENSGT00940000156637
Passeriformes_g	ANCESTRAL SPECIES	24	ENSGT00940000154102.a	ENSGT00730000111186	ENSGT00960000187715	ENSGT00940000159825	ENSGT00390000017780.f	ENSGT00940000154563	ENSGT00940000167691	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000000819.b	ENSGT00940000169516	ENSGT00940000156735	ENSGT00940000154709.a.a	ENSGT00390000005256	ENSGT01030000234588.b.a	ENSGT00440000039564.a.a	ENSGT00940000156777	ENSGT00940000157067	ENSGT00940000166065	ENSGT00940000157586	ENSGT00940000156637
Medium ground finch	MODERN SPECIES	128	INAVA (ENSGFOG00000013016)	ENSGFOG00000013023	SHISA4 (ENSGFOG00000013030)	LMOD1 (ENSGFOG00000013038)	TIMM17A (ENSGFOG00000013041)	ADIPOR1 (ENSGFOG00000013047)	ENSGFOG00000013065	UBE2T (ENSGFOG00000013070)	ENSGFOG00000013076	LRIF1 (ENSGFOG00000013086)	DRAM2 (ENSGFOG00000013088)	CEPT1 (ENSGFOG00000001999)	DENND2D (ENSGFOG00000002007)	MYBPH (ENSGFOG00000002017)	ADORA1 (ENSGFOG00000002030)	MYOG (ENSGFOG00000002039) ##22	PPFIA4 (ENSGFOG00000002061) ##26	ENSGFOG00000002124 #26	TMEM183A (ENSGFOG00000002132)	ENSGFOG00000002149	TMEM9 (ENSGFOG00000002156)	ENSGFOG00000002170	PKP1 (ENSGFOG00000002225)	TNNT2 (ENSGFOG00000003306)	TNNI1 (ENSGFOG00000003337)	PHLDA3 (ENSGFOG00000003358)	CSRP1 (ENSGFOG00000003369)	ENSGFOG00000003382	ENSGFOG00000003446	SYT2 (ENSGFOG00000003458)	NAV1 (ENSGFOG00000003479)
Passeroidea	ANCESTRAL SPECIES	24	ENSGT00940000154102.a	ENSGT00730000111186	ENSGT00960000187715	ENSGT00940000159825	ENSGT00390000017780.f	ENSGT00940000154563	ENSGT00940000167691	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000000819.b	ENSGT00940000169516	ENSGT00940000156735	ENSGT00940000154709.a.a	ENSGT00390000005256	ENSGT01030000234588.b.a	ENSGT00440000039564.a.a	ENSGT00940000156777	ENSGT00940000157067	ENSGT00940000166065	ENSGT00940000157586	ENSGT00940000156637
Zebra finch	MODERN SPECIES	19	SARS1 (ENSTGUG00000001437)	TMEM167B (ENSTGUG00000021926)	INAVA (ENSTGUG00000026592)	SHISA4 (ENSTGUG00000027200)	LMOD1 (ENSTGUG00000025900)	TIMM17A (ENSTGUG00000001422)	ADIPOR1 (ENSTGUG00000001415)	ENSTGUG00000001414	UBE2T (ENSTGUG00000001411)	ENSTGUG00000001403	LRIF1 (ENSTGUG00000001402)	DRAM2 (ENSTGUG00000001400)	DENND2D (ENSTGUG00000001388)	MYBPH (ENSTGUG00000001383)	ADORA1 (ENSTGUG00000001381)	MYOG (ENSTGUG00000001380) ##22	PPFIA4 (ENSTGUG00000001363) ##26	TMEM183A (ENSTGUG00000001354)	ENSTGUG00000001350	ENSTGUG00000023392	TMEM9 (ENSTGUG00000024782)	ENSTGUG00000001343	PKP1 (ENSTGUG00000001339)	TNNT2 (ENSTGUG00000001330)	ENSTGUG00000001329	TNNI1 (ENSTGUG00000001319)	PHLDA3 (ENSTGUG00000001317)	CSRP1 (ENSTGUG00000024671)	PPP1R12B (ENSTGUG00000001309)	ENSTGUG00000028728	SYT2 (ENSTGUG00000001304)
Common canary	MODERN SPECIES	46	ENSSCAG00000007172	SHISA4 (ENSSCAG00000007168)	ENSSCAG00000007164	LMOD1 (ENSSCAG00000007161)	TIMM17A (ENSSCAG00000007158)	ENSSCAG00000007154	ENSSCAG00000007119	UBE2T (ENSSCAG00000007108)	ENSSCAG00000007102	LRIF1 (ENSSCAG00000007100)	DRAM2 (ENSSCAG00000007097)	CEPT1 (ENSSCAG00000007093)	DENND2D (ENSSCAG00000007088)	MYBPH (ENSSCAG00000007084)	ADORA1 (ENSSCAG00000007082)	MYOG (ENSSCAG00000007079) ##22	PPFIA4 (ENSSCAG00000007064) ##26	TMEM183A (ENSSCAG00000007059)	ENSSCAG00000007055	TMEM9 (ENSSCAG00000007050)	ENSSCAG00000007046	ENSSCAG00000007038	PKP1 (ENSSCAG00000007030)	TNNT2 (ENSSCAG00000007026)	ENSSCAG00000007018	ENSSCAG00000007013	TNNI1 (ENSSCAG00000007010)	PHLDA3 (ENSSCAG00000007008)	CSRP1 (ENSSCAG00000007004)	ENSSCAG00000006997	ENSSCAG00000006994
Flycatcher	MODERN SPECIES	18	ENSFALG00000002386	ENSFALG00000024916	SHISA4 (ENSFALG00000028427)	ENSFALG00000002397	TIMM17A (ENSFALG00000002401)	ENSFALG00000027373	ENSFALG00000002416	ENSFALG00000002420	ENSFALG00000002425	ENSFALG00000002434	DRAM2 (ENSFALG00000025847)	ENSFALG00000002448	DENND2D (ENSFALG00000002460)	MYBPH (ENSFALG00000002464)	ADORA1 (ENSFALG00000002469)	MYOG (ENSFALG00000024244) ##22	ENSFALG00000024956	PPFIA4 (ENSFALG00000002474) ##26	ENSFALG00000002482	ENSFALG00000002489	TMEM9 (ENSFALG00000025068)	ENSFALG00000027556	ENSFALG00000002495	PKP1 (ENSFALG00000002501)	TNNT2 (ENSFALG00000002514)	LAD1 (ENSFALG00000002526)	ENSFALG00000025141	TNNI1 (ENSFALG00000002528)	PHLDA3 (ENSFALG00000014611)	CSRP1 (ENSFALG00000002542)	ENSFALG00000028866
Great tit	MODERN SPECIES	19	TMEM167B (ENSPMJG00000004559)	INAVA (ENSPMJG00000004564)	ENSPMJG00000004574	LMOD1 (ENSPMJG00000004582)	TIMM17A (ENSPMJG00000004588)	ADIPOR1 (ENSPMJG00000004594)	ENSPMJG00000004610	UBE2T (ENSPMJG00000004613)	ENSPMJG00000004623	LRIF1 (ENSPMJG00000004634)	DRAM2 (ENSPMJG00000004636)	CEPT1 (ENSPMJG00000004653)	DENND2D (ENSPMJG00000004659)	MYBPH (ENSPMJG00000004664)	ADORA1 (ENSPMJG00000004672)	MYOG (ENSPMJG00000004674) ##22	PPFIA4 (ENSPMJG00000004678) ##26	TMEM183A (ENSPMJG00000004698)	ENSPMJG00000004699	TMEM9 (ENSPMJG00000004702)	ENSPMJG00000004704	PKP1 (ENSPMJG00000004713)	TNNT2 (ENSPMJG00000004718)	ENSPMJG00000004724	TNNI1 (ENSPMJG00000004728)	PHLDA3 (ENSPMJG00000004739)	CSRP1 (ENSPMJG00000004741)	ENSPMJG00000004750	ENSPMJG00000004784	SYT2 (ENSPMJG00000004789)	NAV1 (ENSPMJG00000004802)
Neognathae_c	ANCESTRAL SPECIES	27	ENSGT01050000244888.a.b	ENSGT00940000154102.a	ENSGT00730000111186	ENSGT00940000159825	ENSGT00390000017780.f	ENSGT00940000154563	ENSGT00940000167691	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000000819.b	ENSGT00940000169516	ENSGT00940000162073	ENSGT00940000156735	ENSGT00940000154709.a.a	ENSGT00390000005256	ENSGT01030000234588.b.a	ENSGT00440000039564.a.a	ENSGT00940000156777	ENSGT00940000157067	ENSGT00940000157586	ENSGT00940000156637
Kakapo	MODERN SPECIES	30	ELAPOR1 (ENSSHBG00005006308)	INAVA (ENSSHBG00005006234)	ENSSHBG00005006205	ENSSHBG00005006181	TIMM17A (ENSSHBG00005006162)	ADIPOR1 (ENSSHBG00005006142)	ENSSHBG00005006117	UBE2T (ENSSHBG00005006103)	ENSSHBG00005006065	LRIF1 (ENSSHBG00005006034)	DRAM2 (ENSSHBG00005006023)	CEPT1 (ENSSHBG00005005944)	DENND2D (ENSSHBG00005005926)	MYBPH (ENSSHBG00005005881)	ADORA1 (ENSSHBG00005005858)	MYOG (ENSSHBG00005005843) ##22	PPFIA4 (ENSSHBG00005005805) ##26	TMEM183A (ENSSHBG00005005752)	ENSSHBG00005005726	TMEM9 (ENSSHBG00005000793)	ENSSHBG00005000789	PKP1 (ENSSHBG00005017238)	TNNT2 (ENSSHBG00005017231)	LAD1 (ENSSHBG00005017228)	TNNI1 (ENSSHBG00005017219)	PHLDA3 (ENSSHBG00005017215)	CSRP1 (ENSSHBG00005017211)	ENSSHBG00005017207	SYT2 (ENSSHBG00005017201)	NAV1 (ENSSHBG00005017194)	RNPEP (ENSSHBG00005017185)
Golden eagle	MODERN SPECIES	16	INAVA (ENSACCG00020009128)	SHISA4 (ENSACCG00020009162)	LMOD1 (ENSACCG00020009182)	ENSACCG00020009189	TIMM17A (ENSACCG00020009210)	ADIPOR1 (ENSACCG00020009224)	ENSACCG00020009239	UBE2T (ENSACCG00020009244)	ENSACCG00020009265	LRIF1 (ENSACCG00020009289)	DRAM2 (ENSACCG00020009306)	CEPT1 (ENSACCG00020009330)	DENND2D (ENSACCG00020009339)	MYBPH (ENSACCG00020009357)	ADORA1 (ENSACCG00020009375)	MYOG (ENSACCG00020009387) ##22	PPFIA4 (ENSACCG00020009414) ##26	TMEM183A (ENSACCG00020009442)	TMEM9 (ENSACCG00020009454)	ENSACCG00020009467	ENSACCG00020009492	PKP1 (ENSACCG00020009533)	TNNT2 (ENSACCG00020009571)	LAD1 (ENSACCG00020009588)	TNNI1 (ENSACCG00020009637)	PHLDA3 (ENSACCG00020009657)	CSRP1 (ENSACCG00020009670)	PPP1R12B (ENSACCG00020009734)	SYT2 (ENSACCG00020009791)	NAV1 (ENSACCG00020010203)	RNPEP (ENSACCG00020010556)
African ostrich	MODERN SPECIES	337			ENSSCUG00000002982	TIMM17A (ENSSCUG00000002984)	ADIPOR1 (ENSSCUG00000002989)	ENSSCUG00000002991	UBE2T (ENSSCUG00000002992)	ENSSCUG00000002993	LRIF1 (ENSSCUG00000002995)	DRAM2 (ENSSCUG00000002996)	CEPT1 (ENSSCUG00000003000)	DENND2D (ENSSCUG00000003002)	ENSSCUG00000003004	MYBPH (ENSSCUG00000003007)	ADORA1 (ENSSCUG00000003010)	MYOG (ENSSCUG00000003012) ##22	PPFIA4 (ENSSCUG00000003020) ##26	TMEM183A (ENSSCUG00000003024)	ENSSCUG00000003025	TMEM9 (ENSSCUG00000003027)	ENSSCUG00000003028	ENSSCUG00000003029	PKP1 (ENSSCUG00000003030)	TNNT2 (ENSSCUG00000003033)	LAD1 (ENSSCUG00000003039)	TNNI1 (ENSSCUG00000003046)	PHLDA3 (ENSSCUG00000003049)	CSRP1 (ENSSCUG00000003050)	ENSSCUG00000003051	ENSSCUG00000003053	SYT2 (ENSSCUG00000003054)
Australian saltwater crocodile	MODERN SPECIES	52	ELF3 (ENSCPRG00005006245)	GPR37L1 (ENSCPRG00005006237)	ARL8A (ENSCPRG00005006232)	PTPN7 (ENSCPRG00005006227)	ENSCPRG00005006223	ENSCPRG00005006219	ENSCPRG00005006184	LGR6 (ENSCPRG00005006142)	UBE2T (ENSCPRG00005006126)	LRIF1 (ENSCPRG00005006124)	DRAM2 (ENSCPRG00005006120)	CEPT1 (ENSCPRG00005006113)	DENND2D (ENSCPRG00005006083)	MYBPH (ENSCPRG00005006074)	ADORA1 (ENSCPRG00005006061)	MYOG (ENSCPRG00005006056) ##22	PPFIA4 (ENSCPRG00005006022) ##26	TMEM183A (ENSCPRG00005006010)	ENSCPRG00005006006	ENSCPRG00005006004	CACNA1S (ENSCPRG00005004909)	KIF21B (ENSCPRG00005004750)	CSRP1 (ENSCPRG00005004741)	PHLDA3 (ENSCPRG00005004738)	TNNI1 (ENSCPRG00005004735)	TNNT2 (ENSCPRG00005004703)	PKP1 (ENSCPRG00005004682)	ENSCPRG00005004667	TMEM9 (ENSCPRG00005004662)	ASCL5 (ENSCPRG00005004650)	ENSCPRG00005004572
Cryptodira	ANCESTRAL SPECIES	52	ENSGT00940000160431	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT00940000159939	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000170563	ENSGT00940000163962	ENSGT00940000158289.b	ENSGT00940000159650	ENSGT00940000154102.a	ENSGT01050000244888.a.b	ENSGT00390000011228.a	ENSGT00940000162196	ENSGT01030000234625.A	ENSGT00940000156861	ENSGT00940000153792.B	ENSGT00940000157493	ENSGT00940000154189.A
Testudinoidea	ANCESTRAL SPECIES	22	ENSGT00940000160431	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT00940000159939	ENSGT00940000157365.j	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000170563	ENSGT00940000163962	ENSGT00940000158289.b	ENSGT00940000159650.q	ENSGT00940000154102.a	ENSGT01050000244888.a.b	ENSGT00390000011228.a	ENSGT00940000162196	ENSGT01030000234625.A	ENSGT00940000156861	ENSGT00940000153792.B	ENSGT00940000157493	ENSGT00940000154189.A
Testudinidae	ANCESTRAL SPECIES	26	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT00940000159939	ENSGT00940000157365.j	ENSGT00940000157365.i	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000170563	ENSGT00940000163962	ENSGT00940000158289.b	ENSGT00940000159650.q	ENSGT00940000154102.a	ENSGT01050000244888.a.b	ENSGT00390000011228.a	ENSGT00940000162196	ENSGT01030000234625.A	ENSGT00940000156861	ENSGT00940000153792.B	ENSGT00940000157493	ENSGT00940000154189.A
Goode s thornscrub tortoise	MODERN SPECIES	18	RNPEP (ENSGEVG00005017826)	ELF3 (ENSGEVG00005017757)	GPR37L1 (ENSGEVG00005017731)	ARL8A (ENSGEVG00005017714)	PTPN7 (ENSGEVG00005017694)	ENSGEVG00005017566	LGR6 (ENSGEVG00005017430)	UBE2T (ENSGEVG00005017349)	ENSGEVG00005017332	LRIF1 (ENSGEVG00005017261)	DRAM2 (ENSGEVG00005017246)	CEPT1 (ENSGEVG00005017221)	DENND2D (ENSGEVG00005017176)	MYBPH (ENSGEVG00005017043)	ADORA1 (ENSGEVG00005017006)	MYOG (ENSGEVG00005016982) ##22	ENSGEVG00005016960	PPFIA4 (ENSGEVG00005016938) ##26	TMEM183A (ENSGEVG00005016895)	ENSGEVG00005016850	ENSGEVG00005016823	CACNA1S (ENSGEVG00005015619)	KIF21B (ENSGEVG00005011008)	INAVA (ENSGEVG00005010232)	GPR25 (ENSGEVG00005010211)	ENSGEVG00005010087	TMEM167B (ENSGEVG00005010040)	CFAP276 (ENSGEVG00005009981)	ELAPOR1 (ENSGEVG00005009795)	SARS1 (ENSGEVG00005009757)	CELSR2 (ENSGEVG00005009183)
Abingdon island giant tortoise	MODERN SPECIES	2190										LRIF1 (ENSCABG00000016645)	DRAM2 (ENSCABG00000016647)	CEPT1 (ENSCABG00000016658)	DENND2D (ENSCABG00000016661)	MYBPH (ENSCABG00000016668)	ADORA1 (ENSCABG00000016674)	MYOG (ENSCABG00000016675) ##22	PPFIA4 (ENSCABG00000016678) ##26	TMEM183A (ENSCABG00000016680)	ENSCABG00000016681	ENSCABG00000016682	CACNA1S (ENSCABG00000016707)	KIF21B (ENSCABG00000017476)	ENSCABG00000017486
Emydidae	ANCESTRAL SPECIES	73	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT01030000237114	ENSGT00940000159939	ENSGT00940000157365.j	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310
Three-toed box turtle	MODERN SPECIES	89	SYT2 (ENSTMTG00000012634)	NAV1 (ENSTMTG00000012573)	RNPEP (ENSTMTG00000012090)	ELF3 (ENSTMTG00000012047)	GPR37L1 (ENSTMTG00000012023)	ARL8A (ENSTMTG00000012007)	PTPN7 (ENSTMTG00000011982)	ENSTMTG00000011908	ENSTMTG00000011779	LRIF1 (ENSTMTG00000011753)	DRAM2 (ENSTMTG00000011739)	CEPT1 (ENSTMTG00000011693)	DENND2D (ENSTMTG00000011669)	MYBPH (ENSTMTG00000011565)	ADORA1 (ENSTMTG00000011551)	MYOG (ENSTMTG00000011545) ##22	PPFIA4 (ENSTMTG00000011478) ##26	ENSTMTG00000011452
painted turtle	MODERN SPECIES	928	RNPEP (ENSCPBG00000010163)	ELF3 (ENSCPBG00000010162)	GPR37L1 (ENSCPBG00000010157)	ARL8A (ENSCPBG00000010155)	PTPN7 (ENSCPBG00000010153)	ENSCPBG00000010130	ENSCPBG00000010129	LGR6 (ENSCPBG00000010122)	UBE2T (ENSCPBG00000010114)	LRIF1 (ENSCPBG00000010109)	DRAM2 (ENSCPBG00000010103)	CEPT1 (ENSCPBG00000010096)	DENND2D (ENSCPBG00000010092)	MYBPH (ENSCPBG00000010083)	ADORA1 (ENSCPBG00000010079)	MYOG (ENSCPBG00000010076) ##22	PPFIA4 (ENSCPBG00000010053) ##26	TMEM183A (ENSCPBG00000010040)
Chinese turtle	MODERN SPECIES	500	RNPEP (ENSPSIG00000010050)	ELF3 (ENSPSIG00000010841)	GPR37L1 (ENSPSIG00000011257)	ARL8A (ENSPSIG00000011488)	PTPN7 (ENSPSIG00000011667)	ENSPSIG00000011801	LGR6 (ENSPSIG00000011884)	UBE2T (ENSPSIG00000012646)	ENSPSIG00000012858	LRIF1 (ENSPSIG00000013752)	DRAM2 (ENSPSIG00000013829)	CEPT1 (ENSPSIG00000013838)	DENND2D (ENSPSIG00000014729)	MYBPH (ENSPSIG00000015146)	ADORA1 (ENSPSIG00000015223)	MYOG (ENSPSIG00000015236) ##22	PPFIA4 (ENSPSIG00000015466) ##26	TMEM183A (ENSPSIG00000016458)	ENSPSIG00000016461	CACNA1S (ENSPSIG00000016471)	KIF21B (ENSPSIG00000017820)
Lepidosauria	ANCESTRAL SPECIES	6	ENSGT00940000160431	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT00940000159939	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000154563	ENSGT00390000017780.f	ENSGT00940000159825	ENSGT00730000111186	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224	ENSGT00940000158190	ENSGT00940000158315	ENSGT00390000015972
Episquamata	ANCESTRAL SPECIES	1	ENSGT00940000160431	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT00940000159939	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000017780.f	ENSGT00940000159825	ENSGT00730000111186	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224	ENSGT00940000158190	ENSGT00940000158315	ENSGT00390000015972	ENSGT00940000160254
Laterata	ANCESTRAL SPECIES	3	ENSGT00940000160431	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT00940000159939	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000017780.f	ENSGT00940000159825	ENSGT00730000111186	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224	ENSGT00940000158190	ENSGT00940000158315	ENSGT00390000015972	ENSGT00940000160254
Argentine black and white tegu	MODERN SPECIES	28	RNPEP (ENSSMRG00000003643)	ELF3 (ENSSMRG00000003640)	GPR37L1 (ENSSMRG00000003636)	ARL8A (ENSSMRG00000003634)	PTPN7 (ENSSMRG00000003633)	ENSSMRG00000003625	LGR6 (ENSSMRG00000003621)	UBE2T (ENSSMRG00000003614)	ENSSMRG00000003610	LRIF1 (ENSSMRG00000003606)	DRAM2 (ENSSMRG00000003600)	CEPT1 (ENSSMRG00000003595)	DENND2D (ENSSMRG00000003589)	MYBPH (ENSSMRG00000003583)	ADORA1 (ENSSMRG00000003578)	MYOG (ENSSMRG00000003566) ##22	PPFIA4 (ENSSMRG00000003527) ##26	TMEM183A (ENSSMRG00000003520)	ENSSMRG00000003510	ENSSMRG00000003339	TIMM17A (ENSSMRG00000003329)	ENSSMRG00000003325	SHISA4 (ENSSMRG00000003322)	KLHL12 (ENSSMRG00000003316)	RABIF (ENSSMRG00000003302)	ENSSMRG00000003292	KDM5B (ENSSMRG00000003284)	IPO9 (ENSSMRG00000003276)	LZTR1 (ENSSMRG00000003263)	MMP24 (ENSSMRG00000003255)	EIF6 (ENSSMRG00000003157)
Common wall lizard	MODERN SPECIES	14	ELF3 (ENSPMRG00000003684)	GPR37L1 (ENSPMRG00000003690)	ARL8A (ENSPMRG00000003695)	PTPN7 (ENSPMRG00000003714)	ENSPMRG00000003722	LGR6 (ENSPMRG00000003735)	ENSPMRG00000003744	UBE2T (ENSPMRG00000003750)	ENSPMRG00000003761	LRIF1 (ENSPMRG00000003766)	DRAM2 (ENSPMRG00000003772)	CEPT1 (ENSPMRG00000003781)	DENND2D (ENSPMRG00000003790)	MYBPH (ENSPMRG00000003798)	ADORA1 (ENSPMRG00000003805)	MYOG (ENSPMRG00000003810) ##22	PPFIA4 (ENSPMRG00000003822) ##26	TMEM183A (ENSPMRG00000003834)	ENSPMRG00000003840	ENSPMRG00000003842	TIMM17A (ENSPMRG00000003848)	LMOD1 (ENSPMRG00000003852)	SHISA4 (ENSPMRG00000003858)	ENSPMRG00000003867	RABIF (ENSPMRG00000003872)	ENSPMRG00000003877	KDM5B (ENSPMRG00000004351)	ENSPMRG00000006872	IPO9 (ENSPMRG00000007066)	LZTR1 (ENSPMRG00000007687)	MMP24 (ENSPMRG00000007849)
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00940000160431	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT00940000159939	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000017780.f	ENSGT00940000159825	ENSGT00730000111186	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224	ENSGT00940000158190	ENSGT00940000158315	ENSGT00390000015972	ENSGT00940000160254
Elapidae	ANCESTRAL SPECIES	1	ENSGT00940000156637	ENSGT00940000160431	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT00940000159939	ENSGT00940000157365	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000017780.f	ENSGT00940000159825	ENSGT00730000111186	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224	ENSGT00940000158190	ENSGT00940000158315	ENSGT00390000015972	ENSGT00940000160254
Indian cobra	MODERN SPECIES	2	RNPEP (ENSNNAG00000017525)	ELF3 (ENSNNAG00000017518)	GPR37L1 (ENSNNAG00000017515)	ARL8A (ENSNNAG00000017510)	ENSNNAG00000017501	PTPN7 (ENSNNAG00000017494)	ENSNNAG00000017432	LGR6 (ENSNNAG00000017395)	UBE2T (ENSNNAG00000017379)	LRIF1 (ENSNNAG00000017365)	DRAM2 (ENSNNAG00000017351)	CEPT1 (ENSNNAG00000017338)	DENND2D (ENSNNAG00000017332)	MYBPH (ENSNNAG00000017322)	ADORA1 (ENSNNAG00000017318)	MYOG (ENSNNAG00000017315) ##22	PPFIA4 (ENSNNAG00000017261) ##26	TMEM183A (ENSNNAG00000017244)	ENSNNAG00000017237	TIMM17A (ENSNNAG00000017231)	ENSNNAG00000017223	SHISA4 (ENSNNAG00000017219)	KLHL12 (ENSNNAG00000017214)	ENSNNAG00000017208	ENSNNAG00000017203	KDM5B (ENSNNAG00000017160)	IPO9 (ENSNNAG00000017063)	LZTR1 (ENSNNAG00000017024)	MMP24 (ENSNNAG00000017012)	EIF6 (ENSNNAG00000017000)	FAM83C (ENSNNAG00000016961)
Elapidae_a	ANCESTRAL SPECIES	3	ENSGT00940000156637	ENSGT00940000160431	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT00940000159939	ENSGT00940000157365	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000017780.f	ENSGT00940000159825	ENSGT00730000111186	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224	ENSGT00940000158190	ENSGT00940000158315	ENSGT00390000015972	ENSGT00940000160254
Acanthophiinae	ANCESTRAL SPECIES	2	ENSGT00940000156637	ENSGT00940000160431	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT00940000159939	ENSGT00940000157365	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000017780.f	ENSGT00940000159825	ENSGT00730000111186	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224	ENSGT00940000158190	ENSGT00940000158315	ENSGT00390000015972	ENSGT00940000160254
Mainland tiger snake	MODERN SPECIES	141	RNPEP (ENSNSUG00000002228)	ELF3 (ENSNSUG00000002509)	ENSNSUG00000002511	GPR37L1 (ENSNSUG00000002512)	ARL8A (ENSNSUG00000002513)	PTPN7 (ENSNSUG00000002638)	ENSNSUG00000002648	ENSNSUG00000002668	UBE2T (ENSNSUG00000002669)	LRIF1 (ENSNSUG00000002682)	DRAM2 (ENSNSUG00000002691)	CEPT1 (ENSNSUG00000002752)	DENND2D (ENSNSUG00000002754)	MYBPH (ENSNSUG00000002764)	ADORA1 (ENSNSUG00000002775)	MYOG (ENSNSUG00000002790) ##22	PPFIA4 (ENSNSUG00000002823) ##26	TMEM183A (ENSNSUG00000002831)	ENSNSUG00000002835	TIMM17A (ENSNSUG00000002838)	LMOD1 (ENSNSUG00000002844)	SHISA4 (ENSNSUG00000002846)	KLHL12 (ENSNSUG00000002854)	RABIF (ENSNSUG00000002925)	ENSNSUG00000002926	KDM5B (ENSNSUG00000002933)	IPO9 (ENSNSUG00000002962)	LZTR1 (ENSNSUG00000003520)	MMP24 (ENSNSUG00000003827)
Eastern brown snake	MODERN SPECIES	8												CEPT1 (ENSPTXG00000001780)	DENND2D (ENSPTXG00000001778)	MYBPH (ENSPTXG00000001774)	ADORA1 (ENSPTXG00000001741)	MYOG (ENSPTXG00000001738) ##22	PPFIA4 (ENSPTXG00000001734) ##26	TMEM183A (ENSPTXG00000001729)	ENSPTXG00000001727	TIMM17A (ENSPTXG00000001725)	LMOD1 (ENSPTXG00000001723)	SHISA4 (ENSPTXG00000001720)	KLHL12 (ENSPTXG00000001717)	RABIF (ENSPTXG00000001713)	ENSPTXG00000001711	KDM5B (ENSPTXG00000001709)	IPO9 (ENSPTXG00000001707)	LZTR1 (ENSPTXG00000001705)	MMP24 (ENSPTXG00000001703)	EIF6 (ENSPTXG00000001702)	ENSPTXG00000001701
Blue-lipped sea krait	MODERN SPECIES	10012																MYOG (ENSLLTG00000006281) ##22
Lizard	MODERN SPECIES	3	GPR37L1 (ENSACAG00000035102)	ARL8A (ENSACAG00000004202)	ENSACAG00000040586	PTPN7 (ENSACAG00000004209)	ENSACAG00000004413	ENSACAG00000044423	LGR6 (ENSACAG00000004485)	UBE2T (ENSACAG00000028388)	ENSACAG00000004583	ENSACAG00000004629	DRAM2 (ENSACAG00000029049)	ENSACAG00000004632	DENND2D (ENSACAG00000004638)	MYBPH (ENSACAG00000004704)	ADORA1 (ENSACAG00000004809)	MYOG (ENSACAG00000004818) ##22	PPFIA4 (ENSACAG00000004833) ##26	ENSACAG00000004942	ENSACAG00000004978	ENSACAG00000004983	TIMM17A (ENSACAG00000004996)	ENSACAG00000005019	SHISA4 (ENSACAG00000005028)	ENSACAG00000027342	KLHL12 (ENSACAG00000005031)	ENSACAG00000005095	ENSACAG00000005101	KDM5B (ENSACAG00000005107)	ENSACAG00000005261	ENSACAG00000005324	MMP24 (ENSACAG00000005407)
tuatara	MODERN SPECIES	567	GPR37L1 (ENSSPUG00000008018)	ARL8A (ENSSPUG00000007980)	PTPN7 (ENSSPUG00000007973)	ENSSPUG00000007969	ENSSPUG00000007967	ENSSPUG00000007964	LGR6 (ENSSPUG00000007952)	UBE2T (ENSSPUG00000007947)	ENSSPUG00000007932	ENSSPUG00000007925	DRAM2 (ENSSPUG00000007918)	CEPT1 (ENSSPUG00000007900)	DENND2D (ENSSPUG00000007881)	MYBPH (ENSSPUG00000007851)	ADORA1 (ENSSPUG00000007842)	MYOG (ENSSPUG00000007831) ##22	PPFIA4 (ENSSPUG00000007812) ##26	TMEM183A (ENSSPUG00000007801)	ENSSPUG00000007791	ADIPOR1 (ENSSPUG00000007783)	TIMM17A (ENSSPUG00000007776)	LMOD1 (ENSSPUG00000007766)	SHISA4 (ENSSPUG00000007725)	KLHL12 (ENSSPUG00000007632)	RABIF (ENSSPUG00000007611)	ENSSPUG00000007603	KDM5B (ENSSPUG00000007566)
Mammalia	ANCESTRAL SPECIES	50	ENSGT00390000012818.o.a.a.a.b	ENSGT00390000012818.o.a.b	ENSGT00940000163411	ENSGT00390000012818.o.b	ENSGT00920000149095.a	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Theria	ANCESTRAL SPECIES	12	ENSGT00390000012818.o.a.a.a.a	ENSGT00390000012818.o.a.b	ENSGT00940000163411	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00940000157898	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962.a	ENSGT00940000163962.b	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079
Marsupialia_b	ANCESTRAL SPECIES	6	ENSGT00940000157898	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962.a	ENSGT00940000163962.b	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Diprotodontia	ANCESTRAL SPECIES	7	ENSGT00940000157898	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962.b	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979	ENSGT00940000159657.d
Diprotodontia_a	ANCESTRAL SPECIES	3	ENSGT00940000157898	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962.b	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00950000182825.A.a.a	ENSGT00940000163962.a	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
koala	MODERN SPECIES	99	REN (ENSPCIG00000017411)	SOX13 (ENSPCIG00000017394)	ETNK2 (ENSPCIG00000017393)	SNRPE (ENSPCIG00000017391)	ENSPCIG00000017389	ENSPCIG00000017388	ENSPCIG00000035390	OPTC (ENSPCIG00000029537)	PRELP (ENSPCIG00000029536)	FMOD (ENSPCIG00000017607)	BTG2 (ENSPCIG00000029530)	CHIT1 (ENSPCIG00000009967)	CHI3L1 (ENSPCIG00000003122)	MYBPH (ENSPCIG00000036721)	ADORA1 (ENSPCIG00000031634)	MYOG (ENSPCIG00000005915) ##22	PPFIA4 (ENSPCIG00000003510) ##26	TMEM183A (ENSPCIG00000003386)	ENSPCIG00000003372	ENSPCIG00000003357	ADIPOR1 (ENSPCIG00000003351)	KLHL12 (ENSPCIG00000003342)	ENSPCIG00000010099	ENSPCIG00000003319	KDM5B (ENSPCIG00000003240)	SYT2 (ENSPCIG00000001150)	PPP1R12B (ENSPCIG00000027353)	UBE2T (ENSPCIG00000000715)	ENSPCIG00000032073	LGR6 (ENSPCIG00000000724)	ENSPCIG00000004945
Common wonbat	MODERN SPECIES	1114																MYOG (ENSVURG00010002324) ##22	PPFIA4 (ENSVURG00010002332) ##26	TMEM183A (ENSVURG00010002380)	ENSVURG00010002390	CYB5R1 (ENSVURG00010002400)	ADIPOR1 (ENSVURG00010002423)	KLHL12 (ENSVURG00010002447)	ENSVURG00010002500	KDM5B (ENSVURG00010002546)	SYT2 (ENSVURG00010002760)	PPP1R12B (ENSVURG00010002835)	UBE2T (ENSVURG00010003247)	LGR6 (ENSVURG00010003286)	PTPN7 (ENSVURG00010003346)	ARL8A (ENSVURG00010003356)	GPR37L1 (ENSVURG00010003364)
Wallaby	MODERN SPECIES	13924																MYOG (ENSMEUG00000015462) ##22
Tasmanian devil	MODERN SPECIES	3	ENSSHAG00000000422	REN (ENSSHAG00000002610)	ETNK2 (ENSSHAG00000031475)	SOX13 (ENSSHAG00000007118)	SNRPE (ENSSHAG00000030092)	ENSSHAG00000001353	ENSSHAG00000002596	ATP2B4 (ENSSHAG00000003581)	OPTC (ENSSHAG00000017409)	PRELP (ENSSHAG00000017347)	FMOD (ENSSHAG00000017098)	BTG2 (ENSSHAG00000029267)	CHIT1 (ENSSHAG00000016753)	CHI3L1 (ENSSHAG00000016598)	MYBPH (ENSSHAG00000016559)	MYOG (ENSSHAG00000016307) ##22	ADORA1 (ENSSHAG00000016198)	TMEM183A (ENSSHAG00000028109)	PPFIA4 (ENSSHAG00000016095) ##26	ENSSHAG00000016040	CYB5R1 (ENSSHAG00000015865)	ADIPOR1 (ENSSHAG00000015796)	KLHL12 (ENSSHAG00000015718)	ENSSHAG00000030734	KDM5B (ENSSHAG00000015215)	SYT2 (ENSSHAG00000014567)	ENSSHAG00000030417	ENSSHAG00000013620	UBE2T (ENSSHAG00000013413)	LGR6 (ENSSHAG00000012606)	ENSSHAG00000012326
Opossum	MODERN SPECIES	1	ENSMODG00000040633	ENSMODG00000027863	SNRPE (ENSMODG00000028394)	ENSMODG00000001184	ENSMODG00000025657	ATP2B4 (ENSMODG00000001137)	OPTC (ENSMODG00000001113)	PRELP (ENSMODG00000001105)	FMOD (ENSMODG00000001094)	BTG2 (ENSMODG00000045198)	CHIT1 (ENSMODG00000001082)	CHI3L1 (ENSMODG00000001065)	MYBPH (ENSMODG00000001040)	ADORA1 (ENSMODG00000001023)	ENSMODG00000041675	MYOG (ENSMODG00000001009) ##22	PPFIA4 (ENSMODG00000000996) ##26	TMEM183A (ENSMODG00000000915)	ENSMODG00000000901	ENSMODG00000029571	CYB5R1 (ENSMODG00000000894)	ADIPOR1 (ENSMODG00000000876)	KLHL12 (ENSMODG00000000855)	RABIF (ENSMODG00000043034)	ENSMODG00000000689	KDM5B (ENSMODG00000000755)	SYT2 (ENSMODG00000000684)	ENSMODG00000028224	ENSMODG00000045317	PPP1R12B (ENSMODG00000000662)	UBE2T (ENSMODG00000000652)
Eutheria	ANCESTRAL SPECIES		ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000163962	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00390000012818.o.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00910000146854	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365
Laurasiatheria	ANCESTRAL SPECIES	25	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00910000146854	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00910000146854	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00390000012818.o.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00910000146854	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.j	ENSGT00940000157365
Carnivora	ANCESTRAL SPECIES	14	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.p	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00910000146854	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.j	ENSGT00940000157365
Caniformia	ANCESTRAL SPECIES	10	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.p	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00910000146854	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.j	ENSGT00940000157365
Canidae	ANCESTRAL SPECIES	73													ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241
Canis_lupus	ANCESTRAL SPECIES	54													ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241
Dog	MODERN SPECIES	35													CHI3L1 (ENSCAFG00845014118)	MYBPH (ENSCAFG00845014155)	ADORA1 (ENSCAFG00845014197)	MYOG (ENSCAFG00845014215) ##22	PPFIA4 (ENSCAFG00845014290) ##26	TMEM183A (ENSCAFG00845014504)	ENSCAFG00845014532	MGAT4F (ENSCAFG00845014563)	CYB5R1 (ENSCAFG00845014655)	ADIPOR1 (ENSCAFG00845014708)	RABIF (ENSCAFG00845014768)	TUBA5 (ENSCAFG00845014789)	ENSCAFG00845014815	KDM5B (ENSCAFG00845014886)	SYT2 (ENSCAFG00845015072)	PPP1R12B (ENSCAFG00845015228)	UBE2T (ENSCAFG00845015432)	LGR6 (ENSCAFG00845015504)	PTPRV (ENSCAFG00845015673)
Dingo	MODERN SPECIES	385													CHI3L1 (ENSCAFG00020014953)	MYBPH (ENSCAFG00020014957)	ADORA1 (ENSCAFG00020014971)	MYOG (ENSCAFG00020014979) ##22	ENSCAFG00020014983 ##26	ENSCAFG00020014998 ##26	TMEM183A (ENSCAFG00020015000)	ENSCAFG00020015009	ENSCAFG00020015011	CYB5R1 (ENSCAFG00020015012)	ADIPOR1 (ENSCAFG00020015023)	KLHL12 (ENSCAFG00020015027)	ENSCAFG00020015030	RABIF (ENSCAFG00020015033)	ENSCAFG00020015035	ENSCAFG00020015038	KDM5B (ENSCAFG00020015100)	SYT2 (ENSCAFG00020016132)	ENSCAFG00020016133
Red fox	MODERN SPECIES	144													CHI3L1 (ENSVVUG00000006776)	MYBPH (ENSVVUG00000006751)	ADORA1 (ENSVVUG00000006744)	MYOG (ENSVVUG00000006734) ##22	PPFIA4 (ENSVVUG00000006701) ##26	TMEM183A (ENSVVUG00000006689)	ENSVVUG00000006675	ENSVVUG00000006667	CYB5R1 (ENSVVUG00000006662)	ADIPOR1 (ENSVVUG00000006657)	KLHL12 (ENSVVUG00000006643)	ENSVVUG00000006635	ENSVVUG00000006630	KDM5B (ENSVVUG00000006575)	SYT2 (ENSVVUG00000006543)	PPP1R12B (ENSVVUG00000006523)	ENSVVUG00000006508	UBE2T (ENSVVUG00000006502)	LGR6 (ENSVVUG00000006495)
Caniformia_b	ANCESTRAL SPECIES	8	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00910000146854	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.j	ENSGT00940000157365
Mustelinae	ANCESTRAL SPECIES	48	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.j	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079
American mink	MODERN SPECIES	41	RENI (ENSNVIG00000016512)	ETNK2 (ENSNVIG00000016495)	SOX13 (ENSNVIG00000016438)	SNRPE (ENSNVIG00000016418)	ENSNVIG00000016363	LAX1 (ENSNVIG00000016347)	ATP2B4 (ENSNVIG00000016236)	OPTC (ENSNVIG00000016224)	PRELP (ENSNVIG00000016215)	FMOD (ENSNVIG00000016201)	BTG2 (ENSNVIG00000016190)	CHIT1 (ENSNVIG00000016143)	CHI3L1 (ENSNVIG00000016124)	MYBPH (ENSNVIG00000015929)	ADORA1 (ENSNVIG00000015905)	MYOG (ENSNVIG00000015890) ##22	PPFIA4 (ENSNVIG00000015697) ##26	TMEM183A (ENSNVIG00000015657)	ENSNVIG00000015652	CYB5R1 (ENSNVIG00000015637)	ADR1 (ENSNVIG00000015615)	KLHL12 (ENSNVIG00000015524)	ENSNVIG00000015456	ENSNVIG00000015444	KDM5B (ENSNVIG00000014996)	SYT2 (ENSNVIG00000014958)	ENSNVIG00000014900	ENSNVIG00000014849	UBE2T (ENSNVIG00000014828)	LGR6 (ENSNVIG00000014747)	ENSNVIG00000014677
Ferret	MODERN SPECIES	215	SOX13 (ENSMPUG00000011648)	ENSMPUG00000011642	ENSMPUG00000011630	ZBED6 (ENSMPUG00000019262)	LAX1 (ENSMPUG00000011624)	ATP2B4 (ENSMPUG00000011614)	ENSMPUG00000011609	OPTC (ENSMPUG00000011577)	PRELP (ENSMPUG00000011571)	FMOD (ENSMPUG00000011566)	BTG2 (ENSMPUG00000011561)	CHIT1 (ENSMPUG00000011554)	CHI3L1 (ENSMPUG00000011520)	MYBPH (ENSMPUG00000011512)	ADORA1 (ENSMPUG00000011510)	MYOG (ENSMPUG00000011508) ##22	PPFIA4 (ENSMPUG00000011285) ##26	TMEM183A (ENSMPUG00000011275)	ENSMPUG00000011269	CYB5R1 (ENSMPUG00000011221)	ADIPOR1 (ENSMPUG00000011215)	KLHL12 (ENSMPUG00000011208)	RABIF (ENSMPUG00000011205)	ENSMPUG00000011202	ENSMPUG00000011196	KDM5B (ENSMPUG00000011183)	SYT2 (ENSMPUG00000011176)	PPP1R12B (ENSMPUG00000011165)	UBE2T (ENSMPUG00000011160)	LGR6 (ENSMPUG00000011078)	ENSMPUG00000010995
Ursidae	ANCESTRAL SPECIES	4	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851.f	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00910000146854	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.j	ENSGT00940000157365
Ursus	ANCESTRAL SPECIES	42	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00910000146854	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.j	ENSGT00940000157365
American black bear	MODERN SPECIES	141				ENSUAMG00000005641	ZBED6 (ENSUAMG00000005643)	LAX1 (ENSUAMG00000005645)	ATP2B4 (ENSUAMG00000005678)	OPTC (ENSUAMG00000006402)	PRELP (ENSUAMG00000006404)	FMOD (ENSUAMG00000006406)	BTG2 (ENSUAMG00000006408)	CHIT1 (ENSUAMG00000006412)	CHI3L1 (ENSUAMG00000006418)	MYBPH (ENSUAMG00000006439)	ADORA1 (ENSUAMG00000006447)	MYOG (ENSUAMG00000006448) ##22	PPFIA4 (ENSUAMG00000006464) ##26	TMEM183A (ENSUAMG00000006501)
Polar bear	MODERN SPECIES	119	ETNK2 (ENSUMAG00000006030)	SOX13 (ENSUMAG00000005881)	ENSUMAG00000005865	SNRPE (ENSUMAG00000005861)	ENSUMAG00000005588	LAX1 (ENSUMAG00000005538)	ATP2B4 (ENSUMAG00000005514)	OPTC (ENSUMAG00000005511)	PRELP (ENSUMAG00000005510)	FMOD (ENSUMAG00000005504)	BTG2 (ENSUMAG00000005502)	CHIT1 (ENSUMAG00000005499)	CHI3L1 (ENSUMAG00000005495)	ENSUMAG00000005491	ADORA1 (ENSUMAG00000005482)	MYOG (ENSUMAG00000005475) ##22	PPFIA4 (ENSUMAG00000005440) ##26	TMEM183A (ENSUMAG00000005428)	ENSUMAG00000005423	ENSUMAG00000005419	CYB5R1 (ENSUMAG00000005413)	ADIPOR1 (ENSUMAG00000005411)	KLHL12 (ENSUMAG00000005409)	RABIF (ENSUMAG00000005402)	ENSUMAG00000005399	ENSUMAG00000005397	KDM5B (ENSUMAG00000004534)	SYT2 (ENSUMAG00000004419)	ENSUMAG00000004415	ENSUMAG00000004392	UBE2T (ENSUMAG00000004388)
Giant Panda	MODERN SPECIES	18	ENSAMEG00000023880	ENSAMEG00000019873	SNRPE (ENSAMEG00000000882)	ENSAMEG00000030481	ENSAMEG00000000838	LAX1 (ENSAMEG00000000832)	ATP2B4 (ENSAMEG00000000712)	OPTC (ENSAMEG00000000694)	PRELP (ENSAMEG00000000687)	FMOD (ENSAMEG00000012439)	BTG2 (ENSAMEG00000025361)	CHIT1 (ENSAMEG00000012386)	CHI3L1 (ENSAMEG00000012357)	MYBPH (ENSAMEG00000012332)	ADORA1 (ENSAMEG00000012329)	MYOG (ENSAMEG00000012326) ##22	PPFIA4 (ENSAMEG00000012267) ##26	TMEM183A (ENSAMEG00000012253)	ENSAMEG00000020144	ENSAMEG00000012252	CYB5R1 (ENSAMEG00000012218)	ADIPOR1 (ENSAMEG00000012199)	KLHL12 (ENSAMEG00000012152)	RABIF (ENSAMEG00000024693)	ENSAMEG00000029135	ENSAMEG00000023721	KDM5B (ENSAMEG00000012088)	SYT2 (ENSAMEG00000012070)	PPP1R12B (ENSAMEG00000012065)	UBE2T (ENSAMEG00000011892)	LGR6 (ENSAMEG00000011896)
Felidae	ANCESTRAL SPECIES	11	ENSGT00940000157898	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.p	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a.e ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.j	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079
Panthera	ANCESTRAL SPECIES	19	ENSGT00940000158759	ENSGT00950000182891.a.a.b.a.a.a.b.a.a	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a.e ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.j	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979
Tiger	MODERN SPECIES	245	ENSPTIG00000013863	SOX13 (ENSPTIG00000011164)	ENSPTIG00000002644	SNRPE (ENSPTIG00000010866)	ENSPTIG00000010659	ENSPTIG00000008767	LAX1 (ENSPTIG00000007022)	ATP2B4 (ENSPTIG00000005453)	OPTC (ENSPTIG00000004163)	PRELP (ENSPTIG00000003289)	FMOD (ENSPTIG00000002004)	BTG2 (ENSPTIG00000000957)	CHIT1 (ENSPTIG00000022090)	CHI3L1 (ENSPTIG00000022077)	ADORA1 (ENSPTIG00000021912)	MYOG (ENSPTIG00000021825) ##22	PPFIA4 (ENSPTIG00000006369) ##26	TMEM183A (ENSPTIG00000002173)	ENSPTIG00000001661	CYB5R1 (ENSPTIG00000020319)	ADIPOR1 (ENSPTIG00000018075)	KLHL12 (ENSPTIG00000017341)	RABIF (ENSPTIG00000017028)	ENSPTIG00000016676	ENSPTIG00000016371	KDM5B (ENSPTIG00000012262)	SYT2 (ENSPTIG00000009687)	ENSPTIG00000006301	ENSPTIG00000021429	UBE2T (ENSPTIG00000020427)	LGR6 (ENSPTIG00000013251)
Panthera_a	ANCESTRAL SPECIES	19	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00950000182891.a.a.b.a.a.a.b.a.a	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a.e ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.j	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979
lion	MODERN SPECIES	17	SOX13 (ENSPLOG00000021170)	ENSPLOG00000021155	SNRPE (ENSPLOG00000021120)	ENSPLOG00000021070	ZBED6 (ENSPLOG00000021050)	LAX1 (ENSPLOG00000021029)	ATP2B4 (ENSPLOG00000020956)	OPTC (ENSPLOG00000020899)	PRELP (ENSPLOG00000020882)	FMOD (ENSPLOG00000020864)	BTG2 (ENSPLOG00000020849)	ENSPLOG00000020831	CHIT1 (ENSPLOG00000020814)	CHI3L1 (ENSPLOG00000020758)	ENSPLOG00000020639	MYOG (ENSPLOG00000020619) ##22	PPFIA4 (ENSPLOG00000020467) ##26	TMEM183A (ENSPLOG00000020412)	ENSPLOG00000020400	CYB5R1 (ENSPLOG00000020380)	ADIPOR1 (ENSPLOG00000020357)	KLHL12 (ENSPLOG00000020315)	RABIF (ENSPLOG00000020293)	ENSPLOG00000020271	ENSPLOG00000020256	KDM5B (ENSPLOG00000020041)	SYT2 (ENSPLOG00000019940)	PPP1R12B (ENSPLOG00000019845)	UBE2T (ENSPLOG00000019764)	LGR6 (ENSPLOG00000019580)	PTPN7 (ENSPLOG00000019136)
leopard	MODERN SPECIES	4	ENSPPRG00000020723	ENSPPRG00000024940	ENSPPRG00000024930	ENSPPRG00000024904	ZBED6 (ENSPPRG00000020731)	LAX1 (ENSPPRG00000024884)	ATP2B4 (ENSPPRG00000024831)	OPTC (ENSPPRG00000024815)	PRELP (ENSPPRG00000024788)	FMOD (ENSPPRG00000024787)	BTG2 (ENSPPRG00000024775)	ENSPPRG00000024734	CHIT1 (ENSPPRG00000024703)	CHI3L1 (ENSPPRG00000024668)	ADORA1 (ENSPPRG00000024577)	MYOG (ENSPPRG00000024546) ##22	ENSPPRG00000024457 ##26	ENSPPRG00000024388 ##26	ENSPPRG00000024154 ##26	ENSPPRG00000024097	ENSPPRG00000020819	CYB5R1 (ENSPPRG00000023989)	ADIPOR1 (ENSPPRG00000023689)	KLHL12 (ENSPPRG00000023567)	RABIF (ENSPPRG00000023405)	ENSPPRG00000023168	ENSPPRG00000023144	KDM5B (ENSPPRG00000023015)	SYT2 (ENSPPRG00000023002)	ENSPPRG00000022669	ENSPPRG00000000196
Cat	MODERN SPECIES	248	ETNK2 (ENSFCAG00000031352)	ENSFCAG00000013548	ENSFCAG00000042558	ENSFCAG00000000872	ZBED6 (ENSFCAG00000052187)	LAX1 (ENSFCAG00000045244)	ATP2B4 (ENSFCAG00000000870)	OPTC (ENSFCAG00000013116)	PRELP (ENSFCAG00000025207)	FMOD (ENSFCAG00000031151)	BTG2 (ENSFCAG00000043254)	ENSFCAG00000036418	CHIT1 (ENSFCAG00000013111)	CHI3L1 (ENSFCAG00000038254)	ADORA1 (ENSFCAG00000013109)	MYOG (ENSFCAG00000034593) ##22	PPFIA4 (ENSFCAG00000013107) ##26	TMEM183A (ENSFCAG00000013106)	ENSFCAG00000043564	CYB5R1 (ENSFCAG00000042605)	KLHL12 (ENSFCAG00000013103)	RABIF (ENSFCAG00000040709)	TUBA5 (ENSFCAG00000010749)	ENSFCAG00000027194	KDM5B (ENSFCAG00000013102)	SYT2 (ENSFCAG00000000454)	PPP1R12B (ENSFCAG00000039870)	UBE2T (ENSFCAG00000000452)	LGR6 (ENSFCAG00000025618)	PTPRV (ENSFCAG00000051093)	PTPN7 (ENSFCAG00000045465)
Laurasiatheria_c	ANCESTRAL SPECIES	25												ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000183165.b.b	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.j	ENSGT00940000157365	ENSGT00940000159939
Equus	ANCESTRAL SPECIES	41												ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000183165.b.b	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.i.a	ENSGT00940000157067.i.b	ENSGT00940000157365
Horse	MODERN SPECIES	23												CHIT1 (ENSECAG00000011068)	CHI3L1 (ENSECAG00000029465)	MYBPH (ENSECAG00000054077)	ADORA1 (ENSECAG00000017816)	MYOG (ENSECAG00000015955) ##22	PPFIA4 (ENSECAG00000016600) ##26	TMEM183A (ENSECAG00000008661)	ENSECAG00000035669	ENSECAG00000008372	ENSECAG00000008357	CYB5R1 (ENSECAG00000009763)	ADIPOR1 (ENSECAG00000009624)	KLHL12 (ENSECAG00000015828)	ENSECAG00000056045	TUBA5P (ENSECAG00000002714)	KDM5B (ENSECAG00000014268)	SYT2 (ENSECAG00000010960)	ENSECAG00000005576	PPP1R12B (ENSECAG00000023080)	ENSECAG00000051370
Donkey	MODERN SPECIES	23												ENSEASG00005019643	CHI3L1 (ENSEASG00005019650)	MYBPH (ENSEASG00005019653)	ENSEASG00005031825	MYOG (ENSEASG00005019656) ##22	PPFIA4 (ENSEASG00005019660) ##26	TMEM183A (ENSEASG00005019668)	ENSEASG00005019671	ENSEASG00005019673	CYB5R1 (ENSEASG00005019675)	ADIPOR1 (ENSEASG00005019677)	KLHL12 (ENSEASG00005019678)	RABIF (ENSEASG00005019681)	ENSEASG00005038279	ENSEASG00005019686	KDM5B (ENSEASG00005019690)	SYT2 (ENSEASG00005019698)	PPP1R12B (ENSEASG00005019700)	UBE2T (ENSEASG00005019703)	LGR6 (ENSEASG00005019704)
Chiroptera	ANCESTRAL SPECIES	30													ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.j	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979
Megabat	MODERN SPECIES	2694																MYOG (ENSPVAG00000013141) ##22	PPFIA4 (ENSPVAG00000013140) ##26	TMEM183A (ENSPVAG00000013139)	CYB5R1 (ENSPVAG00000013138)	ADIPOR1 (ENSPVAG00000013137)	KLHL12 (ENSPVAG00000013136)	RABIF (ENSPVAG00000013135)
Microchiroptera	ANCESTRAL SPECIES	32													ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.j	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979
Microbat	MODERN SPECIES	1724															ADORA1 (ENSMLUG00000010287)	MYOG (ENSMLUG00000016127) ##22	PPFIA4 (ENSMLUG00000016109) ##26	TMEM183A (ENSMLUG00000006880)	ENSMLUG00000007489	ENSMLUG00000006892	CYB5R1 (ENSMLUG00000009917)	ENSMLUG00000016102	KLHL12 (ENSMLUG00000006898)	RABIF (ENSMLUG00000017333)	ENSMLUG00000017330	ENSMLUG00000024285
Greater horseshoe bat	MODERN SPECIES	19												CHI3L1 (ENSRFEG00010020040)	MYBPH (ENSRFEG00010020072)	ADORA1 (ENSRFEG00010020201)	PPFIA4 (ENSRFEG00010020236) ##26	MYOG (ENSRFEG00010020334) ##22	TMEM183A (ENSRFEG00010020358)	CYB5R1 (ENSRFEG00010020400)	ADIPOR1 (ENSRFEG00010020422)	KLHL12 (ENSRFEG00010020463)	RABIF (ENSRFEG00010020497)	KDM5B (ENSRFEG00010020669)	SYT2 (ENSRFEG00010021220)	PPP1R12B (ENSRFEG00010021271)	ENSRFEG00010021326	LGR6 (ENSRFEG00010021358)	PTPN7 (ENSRFEG00010021384)	ARL8A (ENSRFEG00010021401)	GPR37L1 (ENSRFEG00010021415)	RNPEP (ENSRFEG00010021429)	TIMM17A (ENSRFEG00010021454)
Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962
Suina	ANCESTRAL SPECIES	15	ENSGT00390000002560	ENSGT01060000248544.a.a.b.a.b	ENSGT00390000013502.b	ENSGT00390000005496	ENSGT00390000015231	ENSGT00940000158056	ENSGT00510000047399	ENSGT00940000155005	ENSGT00940000158561	ENSGT01050000245159	ENSGT00950000183161.b	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000153255.b.a.b.e.b	ENSGT00940000153255.b.a.b.e.a.a	ENSGT00940000153255.b.a.b.f	ENSGT00940000161677.c.b	ENSGT00940000153255.a.j	ENSGT01030000234571.b.b.b.a.a	ENSGT00650000093445	ENSGT00390000016016.A	ENSGT00940000154516.b	ENSGT00940000154774	ENSGT00940000155013	ENSGT00940000157738
Pig	MODERN SPECIES	17	FASLG (ENSSSCG00000022226)	SUCO (ENSSSCG00000015485)	PIGC (ENSSSCG00000015486)	C1orf105 (ENSSSCG00000031550)	DNM3 (ENSSSCG00000038958)	METTL13 (ENSSSCG00000015483)	VAMP4 (ENSSSCG00000015482)	MYOC (ENSSSCG00000035066)	ENSSSCG00000041579	PRRC2C (ENSSSCG00000015480)	CHIT1 (ENSSSCG00000015477)	CHI3L1 (ENSSSCG00000015476)	ENSSSCG00000041477	MYBPH (ENSSSCG00000030681)	ADORA1 (ENSSSCG00000021059)	MYOG (ENSSSCG00000034654) ##22	PPFIA4 (ENSSSCG00000015474) ##26	TMEM183A (ENSSSCG00000015473)	ENSSSCG00000059189	ENSSSCG00000032373	ENSSSCG00000058131	ENSSSCG00000054398	ENSSSCG00000053281	ENSSSCG00000015469	ENSSSCG00000039428	ENSSSCG00000031784	ARHGEF5 (ENSSSCG00000022525)	NOBOX (ENSSSCG00000024977)	TPK1 (ENSSSCG00000015462)	ENSSSCG00000015460	ENSSSCG00000062427
Chacoan peccary	MODERN SPECIES	102	TNFSF4 (ENSCWAG00000018071)	TNFSF18 (ENSCWAG00000018047)	FASLG (ENSCWAG00000018008)	SUCO (ENSCWAG00000017869)	PIGC (ENSCWAG00000017829)	DNM3 (ENSCWAG00000016471)	METTL13 (ENSCWAG00000016350)	VAMP4 (ENSCWAG00000016298)	MYOC (ENSCWAG00000016258)	ENSCWAG00000016233	PRRC2C (ENSCWAG00000015725)	CHIT1 (ENSCWAG00000015470)	CHI3L1 (ENSCWAG00000015360)	MYBPH (ENSCWAG00000015214)	ENSCWAG00000015154	MYOG (ENSCWAG00000015120) ##22	PPFIA4 (ENSCWAG00000014387) ##26	TMEM183A (ENSCWAG00000014319)	ENSCWAG00000014281	ENSCWAG00000014273	ENSCWAG00000014243	ENSCWAG00000014232	ENSCWAG00000014221	ENSCWAG00000014207	ENSCWAG00000014189	ENSCWAG00000014179	ENSCWAG00000014094	NOBOX (ENSCWAG00000013994)	TPK1 (ENSCWAG00000013865)	CNTNAP2 (ENSCWAG00000013584)	CUL1 (ENSCWAG00000012922)
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310
Camelidae	ANCESTRAL SPECIES	52	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310
Arabian camel	MODERN SPECIES	15	ENSCDRG00005016514	ENSCDRG00005016547	ENSCDRG00005016588	ZBED6 (ENSCDRG00005016653)	LAX1 (ENSCDRG00005016704)	ENSCDRG00005016733	ATP2B4 (ENSCDRG00005017535)	OPTC (ENSCDRG00005022043)	PRELP (ENSCDRG00005022045)	FMOD (ENSCDRG00005022049)	BTG2 (ENSCDRG00005022052)	CHIT1 (ENSCDRG00005022056)	CHI3L1 (ENSCDRG00005022058)	MYBPH (ENSCDRG00005022060)	ADORA1 (ENSCDRG00005022066)	MYOG (ENSCDRG00005022070) ##22	PPFIA4 (ENSCDRG00005022075) ##26	TMEM183A (ENSCDRG00005022083)
Alpaca	MODERN SPECIES	899																MYOG (ENSVPAG00000010566) ##22	ENSVPAG00000010565 ##26
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT01070000254179	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310
Cetacea	ANCESTRAL SPECIES		ENSGT00940000158759	ENSGT01070000254179	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310
Odontoceti	ANCESTRAL SPECIES		ENSGT00910000147945	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000156661	ENSGT00950000183122.A	ENSGT00390000000747	ENSGT00950000182994.A.n.b	ENSGT00960000192543	ENSGT00940000160037	ENSGT00510000047676	ENSGT00940000161852	ENSGT00390000008496.j.a.a.b	ENSGT00390000008164.d	ENSGT00950000183059.b.a.b	ENSGT00940000174587	ENSGT00940000155103.a.b
Monodontidae	ANCESTRAL SPECIES		ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000156422.z	ENSGT00940000156661	ENSGT00950000183122.A	ENSGT00390000000747	ENSGT00950000182994.A.n.b	ENSGT00960000192543	ENSGT00940000160037	ENSGT00510000047676	ENSGT00940000161852	ENSGT00390000008496.j.a.a.b	ENSGT00390000008164.d	ENSGT00950000183059.b.a.b	ENSGT00940000174587
Narwhal	MODERN SPECIES	304	ENSMMNG00015003981	ENSMMNG00015003968	ENSMMNG00015003960	ENSMMNG00015003934	ZBED6 (ENSMMNG00015003917)	LAX1 (ENSMMNG00015003899)	ATP2B4 (ENSMMNG00015003852)	OPTC (ENSMMNG00015003805)	PRELP (ENSMMNG00015003769)	FMOD (ENSMMNG00015003756)	BTG2 (ENSMMNG00015003738)	CHIT1 (ENSMMNG00015003706)	CHI3L1 (ENSMMNG00015003658)	MYBPH (ENSMMNG00015003541)	ADORA1 (ENSMMNG00015003513)	MYOG (ENSMMNG00015003492) ##22	PPFIA4 (ENSMMNG00015003458) ##26	TMEM183A (ENSMMNG00015003415)	ENSMMNG00015003390	RGS7 (ENSMMNG00015003213)	FH (ENSMMNG00015003102)	KMO (ENSMMNG00015002991)	CHML (ENSMMNG00015002946)	ENSMMNG00015002941	WDR64 (ENSMMNG00015002862)	EXO1 (ENSMMNG00015002760)	MAP1LC3C (ENSMMNG00015002739)	ENSMMNG00015002733	ENSMMNG00015002712	PLD5 (ENSMMNG00015002650)	ENSMMNG00015002619
Beluga whale	MODERN SPECIES	27	ETNK2 (ENSDLEG00000005755)	SOX13 (ENSDLEG00000005766)	SNRPE (ENSDLEG00000005818)	ENSDLEG00000005830	ZBED6 (ENSDLEG00000005867)	LAX1 (ENSDLEG00000005876)	ATP2B4 (ENSDLEG00000005910)	OPTC (ENSDLEG00000005985)	PRELP (ENSDLEG00000005993)	FMOD (ENSDLEG00000005997)	BTG2 (ENSDLEG00000006002)	ENSDLEG00000006009	CHI3L1 (ENSDLEG00000006019)	MYBPH (ENSDLEG00000006056)	ADORA1 (ENSDLEG00000006076)	MYOG (ENSDLEG00000006080) ##22	PPFIA4 (ENSDLEG00000006102) ##26	TMEM183A (ENSDLEG00000006175)	NLRP3 (ENSDLEG00000006183)	ZNF496 (ENSDLEG00000006189)	ENSDLEG00000006198	ENSDLEG00000006205	ENSDLEG00000006210	TRIM52 (ENSDLEG00000006217)	RACK1 (ENSDLEG00000006233)	TRIM41 (ENSDLEG00000006284)	TRIM7 (ENSDLEG00000006294)	ENSDLEG00000006298	ENSDLEG00000006302	BTNL9 (ENSDLEG00000006307)	ZFP62 (ENSDLEG00000006310)
Vaquita	MODERN SPECIES		ETNK2 (ENSPSNG00000000344)	SOX13 (ENSPSNG00000000405)	ENSPSNG00000000428	SNRPE (ENSPSNG00000000449)	ENSPSNG00000000490	LAX1 (ENSPSNG00000000538)	ATP2B4 (ENSPSNG00000000578)	OPTC (ENSPSNG00000000731)	PRELP (ENSPSNG00000000625)	FMOD (ENSPSNG00000000771)	BTG2 (ENSPSNG00000000796)	ENSPSNG00000000806	ENSPSNG00000000822	MYBPH (ENSPSNG00000000847)	ADORA1 (ENSPSNG00000000886)	MYOG (ENSPSNG00000000902) ##22	PPFIA4 (ENSPSNG00000000975) ##26	TMEM183A (ENSPSNG00000001164)	ENSPSNG00000001192	ENSPSNG00000001209	ENSPSNG00000001221	RGS7 (ENSPSNG00000001350)	FH (ENSPSNG00000001550)	KMO (ENSPSNG00000001618)	CHML (ENSPSNG00000001704)	ENSPSNG00000001713	WDR64 (ENSPSNG00000001764)	EXO1 (ENSPSNG00000001879)	MAP1LC3C (ENSPSNG00000001915)	ENSPSNG00000001924	ENSPSNG00000001933
Dolphin	MODERN SPECIES	1447																MYOG (ENSTTRG00000000710) ##22	PPFIA4 (ENSTTRG00000000708) ##26	TMEM183A (ENSTTRG00000000706)
Sperm whale	MODERN SPECIES	15	PIK3C2B (ENSPCTG00005018283)	PPP1R15B (ENSPCTG00005018955)	ENSPCTG00005018991	ENSPCTG00005019027	ENSPCTG00005019063	SOX13 (ENSPCTG00005019092)	SNRPE (ENSPCTG00005019205)	ZC3H11A (ENSPCTG00005019261)	ZBED6 (ENSPCTG00005019322)	LAX1 (ENSPCTG00005019329)	ATP2B4 (ENSPCTG00005019393)	FMOD (ENSPCTG00005019485)	BTG2 (ENSPCTG00005019521)	CHI3L1 (ENSPCTG00005019554)	ENSPCTG00005019637	MYOG (ENSPCTG00005019656) ##22	PPFIA4 (ENSPCTG00005019711) ##26	TMEM183A (ENSPCTG00005020353)	FMO2 (ENSPCTG00005020397)	ENSPCTG00005020450	FMO4 (ENSPCTG00005020482)	PRRC2C (ENSPCTG00005008627)	ENSPCTG00005009616	MYOC (ENSPCTG00005009661)	VAMP4 (ENSPCTG00005009706)	EEF1AKNMT (ENSPCTG00005009783)	DNM3 (ENSPCTG00005009895)	ENSPCTG00005010024	PIGC (ENSPCTG00005010048)	C1orf105 (ENSPCTG00005010058)	SUCO (ENSPCTG00005010122)
Blue whale	MODERN SPECIES	14	ATP13A1 (ENSBMSG00010002333)	ENSBMSG00010002309	OR7C1 (ENSBMSG00010002299)	ENSBMSG00010002290	ENSBMSG00010002274	ENSBMSG00010002262	ZNF317 (ENSBMSG00010002252)	ENSBMSG00010002239	OR7G3 (ENSBMSG00010002228)	ENSBMSG00010002222	ENSBMSG00010002204	ENSBMSG00010002193	CHI3L1 (ENSBMSG00010002172)	MYBPH (ENSBMSG00010002132)	ENSBMSG00010002106	MYOG (ENSBMSG00010002092) ##22	PPFIA4 (ENSBMSG00010001825) ##26	TMEM183A (ENSBMSG00010001791)	ENSBMSG00010001771	ENSBMSG00010001762	ENSBMSG00010001707	ENSBMSG00010001680	CYP4F22 (ENSBMSG00010001655)	PGLYRP2 (ENSBMSG00010001628)	RASAL3 (ENSBMSG00010001602)	WIZ (ENSBMSG00010001410)	AKAP8L (ENSBMSG00010001317)	AKAP8 (ENSBMSG00010001297)	BRD4 (ENSBMSG00010001216)	EPHX3 (ENSBMSG00010001163)	NOTCH3 (ENSBMSG00010001081)
Pecora	ANCESTRAL SPECIES	22	ENSGT00390000012818.o.a.a.a.a	ENSGT01070000254179	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310
Yarkand deer	MODERN SPECIES	5	ETNK2 (ENSCHYG00000011580)	SOX13 (ENSCHYG00000011156)	ENSCHYG00000011037	ENSCHYG00000011006	ENSCHYG00000010985	ENSCHYG00000010851	ZBED6 (ENSCHYG00000010836)	LAX1 (ENSCHYG00000010802)	ATP2B4 (ENSCHYG00000010396)	OPTC (ENSCHYG00000010312)	PRELP (ENSCHYG00000010271)	FMOD (ENSCHYG00000010210)	BTG2 (ENSCHYG00000010182)	MYBPH (ENSCHYG00000009685)	ADORA1 (ENSCHYG00000009533)	MYOG (ENSCHYG00000009462) ##22	PPFIA4 (ENSCHYG00000009063) ##26	TMEM183A (ENSCHYG00000008917)
Percora_a	ANCESTRAL SPECIES	15	ENSGT00390000012818.o.a.a.a.a	ENSGT01070000254179	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310
Siberian musk deer	MODERN SPECIES	123	SOX13 (ENSMMSG00000002897)	ENSMMSG00000002836	SNRPE (ENSMMSG00000002813)	ENSMMSG00000002783	ZBED6 (ENSMMSG00000002768)	LAX1 (ENSMMSG00000002752)	ATP2B4 (ENSMMSG00000002663)	OPTC (ENSMMSG00000002629)	PRELP (ENSMMSG00000002612)	FMOD (ENSMMSG00000002597)	BTG2 (ENSMMSG00000002581)	ENSMMSG00000002558	CHI3L1 (ENSMMSG00000002538)	MYBPH (ENSMMSG00000002501)	ADORA1 (ENSMMSG00000002460)	MYOG (ENSMMSG00000002431) ##22	PPFIA4 (ENSMMSG00000002394) ##26	TMEM183A (ENSMMSG00000002361)	ENSMMSG00000002349	ENSMMSG00000002339	ENSMMSG00000002330	ENSMMSG00000002319	ENSMMSG00000002301	ENSMMSG00000002293	ENSMMSG00000002286
Bovidae	ANCESTRAL SPECIES	15	ENSGT00390000012818.o.a.a.a.a	ENSGT01070000254179	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310
Caprinae	ANCESTRAL SPECIES	12	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.a	ENSGT01010000222851	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063.a	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310
Goat	MODERN SPECIES	7	ENSCHIG00000018181	SOX13 (ENSCHIG00000012959)	SNRPE (ENSCHIG00000024013)	ENSCHIG00000012149	ZBED6 (ENSCHIG00000011089)	ENSCHIG00000019212	ENSCHIG00000023819	ENSCHIG00000011811	OPTC (ENSCHIG00000022869)	PRELP (ENSCHIG00000015209)	FMOD (ENSCHIG00000026263)	BTG2 (ENSCHIG00000017484)	CHI3L1 (ENSCHIG00000003384)	MYBPH (ENSCHIG00000017519)	ADORA1 (ENSCHIG00000010182)	MYOG (ENSCHIG00000021331) ##22	PPFIA4 (ENSCHIG00000011499) ##26	TMEM183A (ENSCHIG00000019808)	ENSCHIG00000014347	ENSCHIG00000002879	ENSCHIG00000019934
Rambouillet Sheep	MODERN SPECIES	3	ENSOARG00020004186	SOX13 (ENSOARG00020004125)	ENSOARG00020004077	ENSOARG00020004061	ZC3H11A (ENSOARG00020004029)	ENSOARG00020004001	ENSOARG00020003975	ATP2B4 (ENSOARG00020003931)	OPTC (ENSOARG00020003879)	PRELP (ENSOARG00020003850)	FMOD (ENSOARG00020003825)	CHI3L1 (ENSOARG00020003795)	BTG2 (ENSOARG00020003772)	MYBPH (ENSOARG00020003709)	ENSOARG00020003671	MYOG (ENSOARG00020003647) ##22	PPFIA4 (ENSOARG00020003249) ##26	TMEM183A (ENSOARG00020003175)
Bovinae	ANCESTRAL SPECIES	12	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT01100000264093	ENSGT00390000005568.gb.b.a.a	ENSGT00390000004755.sb.b	ENSGT01010000222906.f	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT01050000244815.A.c.a.a.b.a.a.a.b.d	ENSGT01050000244815.A.c.a.a.b.a.b	ENSGT01100000263496.C.c.a.t	ENSGT01100000263496.C.c.b.c.a.k	ENSGT01100000263496.C.c.a.s.b	ENSGT01100000263496.D.b.a.f	ENSGT01100000263496.D.a.v
Bos	ANCESTRAL SPECIES	12	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT01100000264093	ENSGT00390000005568.gb.b.a.a	ENSGT00390000004755.sb.b	ENSGT01010000222906.f	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT01050000244815.A.c.a.a.b.a.a.a.b.d	ENSGT01050000244815.A.c.a.a.b.a.b.q	ENSGT01100000263496.C.c.a.t	ENSGT01100000263496.C.c.b.c.a.k	ENSGT01100000263496.C.c.a.s.b	ENSGT01100000263496.D.a.v
Bos_b	ANCESTRAL SPECIES	9	ENSGT00920000149095.a	ENSGT01100000263481.n.a.b.b.a.b.b.b.b.b.a	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT01100000264093	ENSGT00390000005568.gb.b.a.a	ENSGT00390000004755.sb.b	ENSGT01010000222906.f	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT01100000263496.C.c.b.c.a.k	ENSGT01100000263496.C.c.a.s.b	ENSGT01100000263496.D.a.v
Hybrid Bos Indicus	MODERN SPECIES	7	ENSBIXG00005013483	ENSBIXG00005013493	LAX1 (ENSBIXG00005013523)	ATP2B4 (ENSBIXG00005000259)	OPTC (ENSBIXG00005013680)	PRELP (ENSBIXG00005013691)	FMOD (ENSBIXG00005001683)	BTG2 (ENSBIXG00005013721)	ENSBIXG00005013733	CHI3L1 (ENSBIXG00005013821)	ADORA1 (ENSBIXG00005013876)	ENSBIXG00005013899	ENSBIXG00005013906	ENSBIXG00005013911	ENSBIXG00005013924	MYOG (ENSBIXG00005013943) ##22	PPFIA4 (ENSBIXG00005014190) ##26	ENSBIXG00005006218	ENSBIXG00005005705	ENSBIXG00005014306
Cow	MODERN SPECIES	7	ENSBTAG00000050925	ZC3H11A (ENSBTAG00000017352)	ENSBTAG00000053471	LAX1 (ENSBTAG00000012349)	ATP2B4 (ENSBTAG00000014059)	OPTC (ENSBTAG00000013764)	PRELP (ENSBTAG00000017834)	FMOD (ENSBTAG00000014912)	BTG2 (ENSBTAG00000015711)	CHI3L1 (ENSBTAG00000018223)	MYBPH (ENSBTAG00000011465)	ADORA1 (ENSBTAG00000011461)	ENSBTAG00000050274	ENSBTAG00000048925	ENSBTAG00000049875	MYOG (ENSBTAG00000006030) ##22	PPFIA4 (ENSBTAG00000015885) ##26	TMEM183A (ENSBTAG00000002874)	OR5W33 (ENSBTAG00000039944)	OR5W1 (ENSBTAG00000015517)	OR5L1C (ENSBTAG00000035659)
Bos_a	ANCESTRAL SPECIES	58	ENSGT01010000222851	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00390000005568.gb.b.a.a	ENSGT00390000004755.sb.b	ENSGT01010000222906.f	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT01050000244815.A.c.a.a.b.a.a.a.b.d	ENSGT01050000244815.A.c.a.a.b.a.b.q	ENSGT01100000263496.C.c.a.t
Wild yak	MODERN SPECIES	745														ENSBMUG00000004598	ENSBMUG00000004606	MYOG (ENSBMUG00000004613) ##22	PPFIA4 (ENSBMUG00000004670) ##26	TMEM183A (ENSBMUG00000004740)	ENSBMUG00000004749	ENSBMUG00000004769
Domestic yak	MODERN SPECIES	5	ENSBGRG00000008286	ENSBGRG00000008107	ZBED6 (ENSBGRG00000008085)	LAX1 (ENSBGRG00000008055)	ATP2B4 (ENSBGRG00000007893)	OPTC (ENSBGRG00000007805)	PRELP (ENSBGRG00000007735)	FMOD (ENSBGRG00000026323)	BTG2 (ENSBGRG00000026320)	CHI3L1 (ENSBGRG00000026316)	MYBPH (ENSBGRG00000026302)	ADORA1 (ENSBGRG00000026296)	ENSBGRG00000026283	ENSBGRG00000026277	ENSBGRG00000026271	MYOG (ENSBGRG00000026269) ##22	PPFIA4 (ENSBGRG00000026254) ##26	TMEM183A (ENSBGRG00000026236)	ENSBGRG00000026232	ENSBGRG00000026223	TNNT2 (ENSBGRG00000026185)	ENSBGRG00000026162	TNNI1 (ENSBGRG00000026141)	PHLDA3 (ENSBGRG00000026131)	CSRP1 (ENSBGRG00000026123)	ENSBGRG00000026117	NAV1 (ENSBGRG00000026038)	IPO9 (ENSBGRG00000025970)	SHISA4 (ENSBGRG00000025959)	LMOD1 (ENSBGRG00000025951)	TIMM17A (ENSBGRG00000025944)
American bison	MODERN SPECIES	3252	ZBED6 (ENSBBBG00000017218)	LAX1 (ENSBBBG00000004262)	ATP2B4 (ENSBBBG00000007498)	OPTC (ENSBBBG00000017375)	PRELP (ENSBBBG00000008600)	FMOD (ENSBBBG00000017404)	BTG2 (ENSBBBG00000017412)	CHI3L1 (ENSBBBG00000004313)	MYBPH (ENSBBBG00000006776)	ENSBBBG00000017457	ENSBBBG00000017467	ENSBBBG00000017482	ENSBBBG00000007948	ENSBBBG00000017490	ENSBBBG00000017492	MYOG (ENSBBBG00000017504) ##22	PPFIA4 (ENSBBBG00000017646) ##26	TMEM183A (ENSBBBG00000008515)	ENSBBBG00000017688	ENSBBBG00000017696	ENSBBBG00000017705	OR5D16 (ENSBBBG00000017716)	ENSBBBG00000008348
Eulipotyphla	ANCESTRAL SPECIES	1065																ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26
Hedgehog	MODERN SPECIES	4083																MYOG (ENSEEUG00000011702) ##22	PPFIA4 (ENSEEUG00000011376) ##26
Common shrew	MODERN SPECIES	1614																MYOG (ENSSARG00000002844) ##22
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00390000012818.o.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00910000146854	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365
Primates	ANCESTRAL SPECIES	7	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00910000146854	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939
Bushbaby	MODERN SPECIES	170	SOX13 (ENSOGAG00000011880)	ENSOGAG00000030218	SNRPE (ENSOGAG00000004309)	ENSOGAG00000000243	ZBED6 (ENSOGAG00000032362)	ENSOGAG00000000242	ATP2B4 (ENSOGAG00000000241)	OPTC (ENSOGAG00000000240)	PRELP (ENSOGAG00000032261)	FMOD (ENSOGAG00000000239)	BTG2 (ENSOGAG00000025083)	CHIT1 (ENSOGAG00000000926)	CHI3L1 (ENSOGAG00000000923)	MYBPH (ENSOGAG00000000919)	ADORA1 (ENSOGAG00000000918)	MYOG (ENSOGAG00000029573) ##22	PPFIA4 (ENSOGAG00000000913) ##26	TMEM183A (ENSOGAG00000000911)	ENSOGAG00000031654	ENSOGAG00000033450	CYB5R1 (ENSOGAG00000011138)	ADIPOR1 (ENSOGAG00000033821)	ENSOGAG00000027208	ENSOGAG00000014771	ENSOGAG00000034326	ENSOGAG00000030995	KDM5B (ENSOGAG00000007102)	SYT2 (ENSOGAG00000001883)	PPP1R12B (ENSOGAG00000000591)	UBE2T (ENSOGAG00000029029)	LGR6 (ENSOGAG00000001875)
Lemuriformes	ANCESTRAL SPECIES	26	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939
Lemuriformes_a	ANCESTRAL SPECIES	12	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979
Coquerels sifaka	MODERN SPECIES	646				ENSPCOG00000021529	ENSPCOG00000022660	LAX1 (ENSPCOG00000022686)	ATP2B4 (ENSPCOG00000018732)	OPTC (ENSPCOG00000027576)	PRELP (ENSPCOG00000024242)	FMOD (ENSPCOG00000028281)	BTG2 (ENSPCOG00000022936)	CHIT1 (ENSPCOG00000022387)	CHI3L1 (ENSPCOG00000017028)	MYBPH (ENSPCOG00000027380)	ADORA1 (ENSPCOG00000025087)	MYOG (ENSPCOG00000012470) ##22	PPFIA4 (ENSPCOG00000018594) ##26	TMEM183A (ENSPCOG00000027295)	CYB5R1 (ENSPCOG00000024279)	ADIPOR1 (ENSPCOG00000019357)	ENSPCOG00000015963	RABIF (ENSPCOG00000018312)	ENSPCOG00000009173	ENSPCOG00000028708	KDM5B (ENSPCOG00000018650)	SYT2 (ENSPCOG00000016003)	ENSPCOG00000028261	PPP1R12B (ENSPCOG00000000892)	UBE2T (ENSPCOG00000023947)	LGR6 (ENSPCOG00000014251)	PTPN7 (ENSPCOG00000025248)
Greater bamboo lemur	MODERN SPECIES	19	SOX13 (ENSPSMG00000004006)	SNRPE (ENSPSMG00000003970)	ENSPSMG00000003815	ZBED6 (ENSPSMG00000003690)	LAX1 (ENSPSMG00000003685)	ATP2B4 (ENSPSMG00000003361)	OPTC (ENSPSMG00000003150)	PRELP (ENSPSMG00000003143)	FMOD (ENSPSMG00000003138)	BTG2 (ENSPSMG00000003135)	CHIT1 (ENSPSMG00000003124)	CHI3L1 (ENSPSMG00000003099)	MYBPH (ENSPSMG00000003049)	ENSPSMG00000003027	ENSPSMG00000003026	MYOG (ENSPSMG00000003024) ##22	PPFIA4 (ENSPSMG00000002896) ##26	TMEM183A (ENSPSMG00000002767)	ENSPSMG00000002735	CYB5R1 (ENSPSMG00000002728)	ADIPOR1 (ENSPSMG00000002706)	KLHL12 (ENSPSMG00000002688)	RABIF (ENSPSMG00000002671)	ENSPSMG00000002640	ENSPSMG00000002617	KDM5B (ENSPSMG00000001734)	SYT2 (ENSPSMG00000001254)	PPP1R12B (ENSPSMG00000000990)	UBE2T (ENSPSMG00000000711)	LGR6 (ENSPSMG00000000695)	PTPN7 (ENSPSMG00000000679)
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	19	REN (ENSMICG00000007875)	ETNK2 (ENSMICG00000007869)	SOX13 (ENSMICG00000009236)	SNRPE (ENSMICG00000015537)	ENSMICG00000015519	LAX1 (ENSMICG00000029490)	ATP2B4 (ENSMICG00000015476)	OPTC (ENSMICG00000015466)	PRELP (ENSMICG00000029382)	FMOD (ENSMICG00000015453)	BTG2 (ENSMICG00000042717)	CHIT1 (ENSMICG00000002312)	CHI3L1 (ENSMICG00000015438)	MYBPH (ENSMICG00000015423)	ADORA1 (ENSMICG00000015418)	ENSMICG00000026339 ##22	ENSMICG00000033097 ##22	PPFIA4 (ENSMICG00000005134) ##26	TMEM183A (ENSMICG00000037686)	ENSMICG00000045794	ENSMICG00000026876	CYB5R1 (ENSMICG00000034721)	ENSMICG00000046405	ENSMICG00000035663	KLHL12 (ENSMICG00000007928)	RABIF (ENSMICG00000007924)	ENSMICG00000035712	ENSMICG00000035809	KDM5B (ENSMICG00000006046)	SYT2 (ENSMICG00000015559)	ENSMICG00000047360
Mouse lemur	MODERN SPECIES	19	ETNK2 (ENSMICG00000007869)	SOX13 (ENSMICG00000009236)	SNRPE (ENSMICG00000015537)	ENSMICG00000015519	LAX1 (ENSMICG00000029490)	ATP2B4 (ENSMICG00000015476)	OPTC (ENSMICG00000015466)	PRELP (ENSMICG00000029382)	FMOD (ENSMICG00000015453)	BTG2 (ENSMICG00000042717)	CHIT1 (ENSMICG00000002312)	CHI3L1 (ENSMICG00000015438)	MYBPH (ENSMICG00000015423)	ADORA1 (ENSMICG00000015418)	ENSMICG00000026339 ##22	ENSMICG00000033097 ##22	PPFIA4 (ENSMICG00000005134) ##26	TMEM183A (ENSMICG00000037686)	ENSMICG00000045794	ENSMICG00000026876	CYB5R1 (ENSMICG00000034721)	ENSMICG00000046405	ENSMICG00000035663	KLHL12 (ENSMICG00000007928)	RABIF (ENSMICG00000007924)	ENSMICG00000035712	ENSMICG00000035809	KDM5B (ENSMICG00000006046)	SYT2 (ENSMICG00000015559)	ENSMICG00000047360	PPP1R12B (ENSMICG00000015543)
Haplorrhini	ANCESTRAL SPECIES	7	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000163962	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00910000146854	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365
Tarsier	MODERN SPECIES	4852		BIRC5 (ENSTSYG00000026744)	ENSTSYG00000026347	TK1 (ENSTSYG00000009450)	SYNGR2 (ENSTSYG00000032357)	C17orf99 (ENSTSYG00000027081)	TMC8 (ENSTSYG00000008476)	TMC6 (ENSTSYG00000030311)	TNRC6C (ENSTSYG00000005403)	FMOD (ENSTSYG00000002491)	BTG2 (ENSTSYG00000036798)	CHIT1 (ENSTSYG00000006195)	CHI3L1 (ENSTSYG00000005599)	MYBPH (ENSTSYG00000012174)	ADORA1 (ENSTSYG00000027513)	MYOG (ENSTSYG00000032390) ##22	PPFIA4 (ENSTSYG00000013208) ##26	TMEM183A (ENSTSYG00000026847)	CYB5R1 (ENSTSYG00000003161)	ADIPOR1 (ENSTSYG00000001491)	KLHL12 (ENSTSYG00000008937)	RABIF (ENSTSYG00000033169)
Simiiformes	ANCESTRAL SPECIES	8	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000163962	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00910000146854.b	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000156705.h
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a	ENSGT00550000074817.e.b	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310.j.a	ENSGT00940000163241	ENSGT00940000163962	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000156705.h	ENSGT00940000157365
Hominoidea	ANCESTRAL SPECIES	7	ENSGT01010000222851	ENSGT00920000149095.a	ENSGT00550000074817.e.b	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00390000018706.m.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310.j.a	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000156705.h	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979
Hominidae	ANCESTRAL SPECIES	6	ENSGT01010000222851	ENSGT00920000149095.a	ENSGT00550000074817.e.b	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00390000018706.m.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310.j.a	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000156705.h	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00390000016972.a.a.b.b.b.a.a.b	ENSGT00920000149095.a.g	ENSGT00550000074817.e.b	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00390000018706.m.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310.j.a	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000156705.h	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979	ENSGT00940000159657.d
Gorilla	MODERN SPECIES		ENSGGOG00000023830	ZC3H11A (ENSGGOG00000004438)	LAX1 (ENSGGOG00000010494)	ENSGGOG00000037477	ENSGGOG00000010467	ENSGGOG00000037269	OPTC (ENSGGOG00000015966)	PRELP (ENSGGOG00000015960)	ENSGGOG00000038088	FMOD (ENSGGOG00000011874)	BTG2 (ENSGGOG00000001857)	CHIT1 (ENSGGOG00000011183)	CHI3L1 (ENSGGOG00000009912)	MYBPH (ENSGGOG00000009899)	ADORA1 (ENSGGOG00000009895)	MYOG (ENSGGOG00000002115) ##22	PPFIA4 (ENSGGOG00000013912) ##26	TMEM183A (ENSGGOG00000009834)	ENSGGOG00000039922	CYB5R1 (ENSGGOG00000005136)	ADIPOR1 (ENSGGOG00000005131)	KLHL12 (ENSGGOG00000009159)	RABIF (ENSGGOG00000003438)	ENSGGOG00000022374	ENSGGOG00000042860	ENSGGOG00000036303	ENSGGOG00000003073	SYT2 (ENSGGOG00000004495)	ENSGGOG00000036878	PPP1R12B (ENSGGOG00000004481)	ENSGGOG00000039199
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00390000016972.a.a.b.b.b.a.a.b	ENSGT00920000149095.a.g	ENSGT00550000074817.e.b	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00390000018706.m.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310.j.a	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a
Pan	ANCESTRAL SPECIES		ENSGT00390000016972.a.a.b.b.b.a.a.b	ENSGT00920000149095.a.g	ENSGT00550000074817.e.b	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00390000018706.m.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310.j.a	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00950000182891.a.a.b.a.b.a.r.a	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979	ENSGT00940000159657.d
Chimpanzee	MODERN SPECIES		SNRPE (ENSPTRG00000043604)	ENSPTRG00000041475	ENSPTRG00000048078	ZC3H11A (ENSPTRG00000001876)	LAX1 (ENSPTRG00000001874)	ATP2B4 (ENSPTRG00000001873)	ENSPTRG00000044182	OPTC (ENSPTRG00000024044)	PRELP (ENSPTRG00000022635)	FMOD (ENSPTRG00000001872)	BTG2 (ENSPTRG00000001871)	CHIT1 (ENSPTRG00000001870)	CHI3L1 (ENSPTRG00000001869)	MYBPH (ENSPTRG00000001868)	ADORA1 (ENSPTRG00000001867)	MYOG (ENSPTRG00000001866) ##22	PPFIA4 (ENSPTRG00000050591) ##26	TMEM183A (ENSPTRG00000001864)	ENSPTRG00000044445	CYB5R1 (ENSPTRG00000001863)	ADIPOR1 (ENSPTRG00000001862)	KLHL12 (ENSPTRG00000001861)	RABIF (ENSPTRG00000001860)	KDM5B (ENSPTRG00000001856)	SYT2 (ENSPTRG00000001854)	ENSPTRG00000046188	PPP1R12B (ENSPTRG00000001851)	UBE2T (ENSPTRG00000001850)	LGR6 (ENSPTRG00000001849)	PTPN7 (ENSPTRG00000001848)	ARL8A (ENSPTRG00000001846)
Bonobo	MODERN SPECIES		ENSPPAG00000034231	ZC3H11A (ENSPPAG00000039060)	ENSPPAG00000033955	ZBED6 (ENSPPAG00000026325)	LAX1 (ENSPPAG00000029666)	ATP2B4 (ENSPPAG00000041080)	ENSPPAG00000029364	OPTC (ENSPPAG00000042530)	PRELP (ENSPPAG00000031486)	FMOD (ENSPPAG00000005300)	BTG2 (ENSPPAG00000008433)	ENSPPAG00000040620	CHI3L1 (ENSPPAG00000033305)	MYBPH (ENSPPAG00000007115)	ADORA1 (ENSPPAG00000034092)	MYOG (ENSPPAG00000029832) ##22	PPFIA4 (ENSPPAG00000024271) ##26	TMEM183A (ENSPPAG00000025262)	ENSPPAG00000040754	CYB5R1 (ENSPPAG00000033586)	ADIPOR1 (ENSPPAG00000040124)	KLHL12 (ENSPPAG00000041960)	RABIF (ENSPPAG00000029057)	KDM5B (ENSPPAG00000041486)	SYT2 (ENSPPAG00000035374)	ENSPPAG00000018881	PPP1R12B (ENSPPAG00000002618)	UBE2T (ENSPPAG00000033691)	LGR6 (ENSPPAG00000029070)	ENSPPAG00000036195	ARL8A (ENSPPAG00000031562)
Human	MODERN SPECIES		SOX13 (ENSG00000143842)	SNRPE (ENSG00000182004)	ENSG00000288644	ZBED6 (ENSG00000257315)	ZC3H11A (ENSG00000058673)	LAX1 (ENSG00000122188)	ATP2B4 (ENSG00000058668)	OPTC (ENSG00000188770)	PRELP (ENSG00000188783)	FMOD (ENSG00000122176)	BTG2 (ENSG00000159388)	CHIT1 (ENSG00000133063)	CHI3L1 (ENSG00000133048)	MYBPH (ENSG00000133055)	ADORA1 (ENSG00000163485)	MYOG (ENSG00000122180) ##22	PPFIA4 (ENSG00000143847) ##26	TMEM183A (ENSG00000163444)	CYB5R1 (ENSG00000159348)	ADIPOR1 (ENSG00000159346)	KLHL12 (ENSG00000117153)	RABIF (ENSG00000183155)	KDM5B (ENSG00000117139)	SYT2 (ENSG00000143858)	PPP1R12B (ENSG00000077157)	UBE2T (ENSG00000077152)	LGR6 (ENSG00000133067)	PTPN7 (ENSG00000143851)	ARL8A (ENSG00000143862)	GPR37L1 (ENSG00000170075)	ELF3 (ENSG00000163435)
Orangutan	MODERN SPECIES		REN (ENSPPYG00000000322)	ENSPPYG00000000323	SOX13 (ENSPPYG00000000324)	ENSPPYG00000034999	ENSPPYG00000000326	ZC3H11A (ENSPPYG00000000327)	ATP2B4 (ENSPPYG00000000329)	OPTC (ENSPPYG00000000330)	PRELP (ENSPPYG00000034400)	FMOD (ENSPPYG00000000332)	BTG2 (ENSPPYG00000033009)	CHIT1 (ENSPPYG00000000334)	CHI3L1 (ENSPPYG00000000335)	MYBPH (ENSPPYG00000000336)	ADORA1 (ENSPPYG00000000337)	MYOG (ENSPPYG00000000338) ##22	PPFIA4 (ENSPPYG00000000339) ##26	TMEM183A (ENSPPYG00000000340)	ENSPPYG00000030585	CYB5R1 (ENSPPYG00000000341)	ADIPOR1 (ENSPPYG00000000342)	KLHL12 (ENSPPYG00000000343)	RABIF (ENSPPYG00000032834)	ENSPPYG00000000345	KDM5B (ENSPPYG00000000346)	SYT2 (ENSPPYG00000000347)	PPP1R12B (ENSPPYG00000000348)	UBE2T (ENSPPYG00000000349)	LGR6 (ENSPPYG00000000350)	ENSPPYG00000000351	ARL8A (ENSPPYG00000000352)
Gibbon	MODERN SPECIES	24	MTIF3 (ENSNLEG00000000343)	GTF3A (ENSNLEG00000000331)	RASL11A (ENSNLEG00000000329)	ENSNLEG00000000327	ENSNLEG00000000323	ATP2B4 (ENSNLEG00000018117)	ENSNLEG00000033057	OPTC (ENSNLEG00000018116)	PRELP (ENSNLEG00000018115)	FMOD (ENSNLEG00000018114)	BTG2 (ENSNLEG00000034785)	CHIT1 (ENSNLEG00000018112)	CHI3L1 (ENSNLEG00000018111)	MYBPH (ENSNLEG00000018110)	ADORA1 (ENSNLEG00000018109)	MYOG (ENSNLEG00000018108) ##22	PPFIA4 (ENSNLEG00000018107) ##26	TMEM183A (ENSNLEG00000018106)	ENSNLEG00000031326	CYB5R1 (ENSNLEG00000033971)	ADIPOR1 (ENSNLEG00000018104)	KLHL12 (ENSNLEG00000018103)	ENSNLEG00000035846	RABIF (ENSNLEG00000018102)	KDM5B (ENSNLEG00000018101)	SYT2 (ENSNLEG00000018100)	ENSNLEG00000018099	ENSNLEG00000018098	ENSNLEG00000018097	UBE2T (ENSNLEG00000018096)	LGR6 (ENSNLEG00000018095)
Cercopithecidae	ANCESTRAL SPECIES	20	ENSGT01010000222851	ENSGT00920000149095.a	ENSGT00550000074817.e.b	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00950000182891.a.a.b.a.a.a.a	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310.j.a.a	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00910000148143	ENSGT00940000157067	ENSGT00940000156705.h
Cercopithecinae	ANCESTRAL SPECIES	18	ENSGT00390000012818.o.a.b	ENSGT00920000149095.a	ENSGT00550000074817.e.b	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00950000182891.a.a.b.a.a.a.a	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310.j.a.a	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00910000148143	ENSGT00940000157067	ENSGT00940000156705.h
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00390000018706.m.b.b.l.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00950000182891.a.a.b.a.a.a.a.y.a	ENSGT00910000148170	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00910000147745	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310.j.a.a	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00940000157076	ENSGT00940000157586	ENSGT00910000148143	ENSGT00940000157067	ENSGT00940000156705.h	ENSGT00940000157365	ENSGT00940000159939
Macaca	ANCESTRAL SPECIES		ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00390000018706.m.b.b.l.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00950000182891.a.a.b.a.a.a.a.y.a	ENSGT00910000148170	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00910000147745	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310.j.a.a	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000156705.h	ENSGT00940000157365	ENSGT00940000159939
Macaca_a	ANCESTRAL SPECIES		ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000164709.a.b.b.b.a.b.c.a.b.b	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310.j.a.a	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00940000167556.b.b.a.b.a.a.a.b.b.b.a.a.a.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939
Rhesus	MODERN SPECIES		SOX13 (ENSMMUG00000008460)	SNRPE (ENSMMUG00000031372)	ZC3H11A (ENSMMUG00000010539)	LAX1 (ENSMMUG00000054133)	ATP2B4 (ENSMMUG00000021116)	OPTC (ENSMMUG00000021640)	PRELP (ENSMMUG00000021641)	ENSMMUG00000052790	ENSMMUG00000050913	FMOD (ENSMMUG00000021642)	BTG2 (ENSMMUG00000053426)	CHIT1 (ENSMMUG00000008709)	CHI3L1 (ENSMMUG00000008711)	MYBPH (ENSMMUG00000064766)	ADORA1 (ENSMMUG00000008714)	MYOG (ENSMMUG00000043626) ##22	PPFIA4 (ENSMMUG00000000063) ##26	TMEM183A (ENSMMUG00000000801)	MGAT4F (ENSMMUG00000051850)	ENSMMUG00000052919	CYB5R1 (ENSMMUG00000054475)	ADIPOR1 (ENSMMUG00000007046)	KLHL12 (ENSMMUG00000017849)	RABIF (ENSMMUG00000053567)	ENSMMUG00000058670	ENSMMUG00000054699	KDM5B (ENSMMUG00000015233)	SYT2 (ENSMMUG00000004001)	PPP1R12B (ENSMMUG00000003998)	UBE2T (ENSMMUG00000013795)	LGR6 (ENSMMUG00000013790)
Crab-eating macaque	MODERN SPECIES		ENSMFAG00000039994	ENSMFAG00000003997	LAX1 (ENSMFAG00000046296)	ENSMFAG00000054151	ATP2B4 (ENSMFAG00000010073)	OPTC (ENSMFAG00000045413)	PRELP (ENSMFAG00000040633)	ENSMFAG00000061915	ENSMFAG00000049609	FMOD (ENSMFAG00000033719)	BTG2 (ENSMFAG00000025652)	CHIT1 (ENSMFAG00000045615)	CHI3L1 (ENSMFAG00000003587)	MYBPH (ENSMFAG00000038338)	ADORA1 (ENSMFAG00000035176)	MYOG (ENSMFAG00000043657) ##22	PPFIA4 (ENSMFAG00000000167) ##26	TMEM183A (ENSMFAG00000034100)	ENSMFAG00000058328	ENSMFAG00000059204	CYB5R1 (ENSMFAG00000000852)	ADIPOR1 (ENSMFAG00000007141)	KLHL12 (ENSMFAG00000031203)	RABIF (ENSMFAG00000037667)	ENSMFAG00000058159	ENSMFAG00000054088	KDM5B (ENSMFAG00000017880)	SYT2 (ENSMFAG00000042825)	PPP1R12B (ENSMFAG00000003726)	UBE2T (ENSMFAG00000042839)	LGR6 (ENSMFAG00000035892)
Pig-tailed macaque	MODERN SPECIES	113	ZBED6 (ENSMNEG00000019676)	LAX1 (ENSMNEG00000035734)	ENSMNEG00000038506	ATP2B4 (ENSMNEG00000028334)	OPTC (ENSMNEG00000007381)	PRELP (ENSMNEG00000036078)	ENSMNEG00000009223	ENSMNEG00000010740	FMOD (ENSMNEG00000037353)	BTG2 (ENSMNEG00000030702)	CHIT1 (ENSMNEG00000028068)	CHI3L1 (ENSMNEG00000041632)	ENSMNEG00000018834	MYBPH (ENSMNEG00000041712)	ADORA1 (ENSMNEG00000036904)	MYOG (ENSMNEG00000035895) ##22	PPFIA4 (ENSMNEG00000037213) ##26	ENSMNEG00000033971	ENSMNEG00000042017	CYB5R1 (ENSMNEG00000044097)	ENSMNEG00000028827	KLHL12 (ENSMNEG00000042480)	RABIF (ENSMNEG00000044527)	KDM5B (ENSMNEG00000034695)	SYT2 (ENSMNEG00000045180)	ENSMNEG00000041756	PPP1R12B (ENSMNEG00000035232)	UBE2T (ENSMNEG00000045358)	LGR6 (ENSMNEG00000031709)	PTPN7 (ENSMNEG00000036879)	ARL8A (ENSMNEG00000039827)
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00920000149095.a	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00390000018706.m.b.b.l.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00950000182891.a.a.b.a.a.a.a.y.a	ENSGT00910000148170	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00910000147745	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310.j.a.a	ENSGT00940000163241	ENSGT00940000163962	ENSGT00940000162325.B	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00940000157076	ENSGT00940000157586	ENSGT00910000148143	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939
Olive baboon	MODERN SPECIES		ENSPANG00000012284	ENSPANG00000034978	ENSPANG00000011479	LAX1 (ENSPANG00000010606)	ATP2B4 (ENSPANG00000012283)	ENSPANG00000049902	OPTC (ENSPANG00000010634)	PRELP (ENSPANG00000007498)	ENSPANG00000050296	FMOD (ENSPANG00000007340)	BTG2 (ENSPANG00000050972)	CHIT1 (ENSPANG00000010633)	CHI3L1 (ENSPANG00000014786)	MYBPH (ENSPANG00000010605)	ADORA1 (ENSPANG00000011451)	MYOG (ENSPANG00000016865) ##22	PPFIA4 (ENSPANG00000012282) ##26	TMEM183A (ENSPANG00000007913)	ENSPANG00000049150	ENSPANG00000038057	ENSPANG00000043800	CYB5R1 (ENSPANG00000035066)	ADIPOR1 (ENSPANG00000014889)	KLHL12 (ENSPANG00000011197)	RABIF (ENSPANG00000032497)	KDM5B (ENSPANG00000014633)	SYT2 (ENSPANG00000019528)	PPP1R12B (ENSPANG00000007497)	UBE2T (ENSPANG00000007191)	LGR6 (ENSPANG00000016204)	PTPN7 (ENSPANG00000015835)
Cercopithecinae_d	ANCESTRAL SPECIES	46	ENSGT00920000149095.a	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00390000018706.m.b.b.l.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00950000182891.a.a.b.a.a.a.a.y.a	ENSGT00910000148170	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00910000147745	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310.j.a.a	ENSGT00940000163241	ENSGT00940000162325.B	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00940000157076	ENSGT00940000157586	ENSGT00910000148143	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979
Sooty mangabey	MODERN SPECIES	106	ENSCATG00000041403	ENSCATG00000039923	LAX1 (ENSCATG00000035082)	ATP2B4 (ENSCATG00000044125)	ENSCATG00000041383	OPTC (ENSCATG00000041166)	PRELP (ENSCATG00000042683)	ENSCATG00000014892	ENSCATG00000015096	FMOD (ENSCATG00000023109)	BTG2 (ENSCATG00000045262)	CHIT1 (ENSCATG00000045197)	CHI3L1 (ENSCATG00000035771)	MYBPH (ENSCATG00000033851)	ADORA1 (ENSCATG00000045370)	MYOG (ENSCATG00000002399) ##22	PPFIA4 (ENSCATG00000044625) ##26	ENSCATG00000026146	ENSCATG00000045023	ENSCATG00000015187 #17	CYB5R1 (ENSCATG00000024122)	ADIPOR1 (ENSCATG00000035491)	KLHL12 (ENSCATG00000031800)	RABIF (ENSCATG00000029847)	KDM5B (ENSCATG00000037165)	SYT2 (ENSCATG00000043827)	ENSCATG00000042832	ENSCATG00000042663	PPP1R12B (ENSCATG00000034778)	UBE2T (ENSCATG00000038737)	LGR6 (ENSCATG00000033660)
Drill	MODERN SPECIES	1046	ENSMLEG00000009417	ENSMLEG00000036916	LAX1 (ENSMLEG00000024411)	ATP2B4 (ENSMLEG00000035583)	ENSMLEG00000032056	OPTC (ENSMLEG00000039265)	PRELP (ENSMLEG00000042419)	ENSMLEG00000027359	FMOD (ENSMLEG00000036882)	BTG2 (ENSMLEG00000043803)	CHIT1 (ENSMLEG00000031883)	CHI3L1 (ENSMLEG00000028044)	ENSMLEG00000024942	MYBPH (ENSMLEG00000042456)	ADORA1 (ENSMLEG00000042216)	MYOG (ENSMLEG00000035402) ##22	PPFIA4 (ENSMLEG00000042044) ##26	ENSMLEG00000043756	ENSMLEG00000009433	CYB5R1 (ENSMLEG00000036777)	ADIPOR1 (ENSMLEG00000040703)	ENSMLEG00000027243 #17	KLHL12 (ENSMLEG00000023751)	RABIF (ENSMLEG00000011422)	KDM5B (ENSMLEG00000031522)	SYT2 (ENSMLEG00000028544)	ENSMLEG00000025577	PPP1R12B (ENSMLEG00000032639)	UBE2T (ENSMLEG00000002615)	LGR6 (ENSMLEG00000015139)	PTPN7 (ENSMLEG00000034416)
Vervet Monkey	MODERN SPECIES	17	ETNK2 (ENSCSAG00000014439)	SOX13 (ENSCSAG00000014423)	ENSCSAG00000000256	ENSCSAG00000014396	ZBED6 (ENSCSAG00000000255)	LAX1 (ENSCSAG00000014387)	ATP2B4 (ENSCSAG00000014379)	OPTC (ENSCSAG00000014362)	PRELP (ENSCSAG00000014352)	FMOD (ENSCSAG00000014347)	BTG2 (ENSCSAG00000014342)	CHIT1 (ENSCSAG00000014338)	CHI3L1 (ENSCSAG00000014333)	MYBPH (ENSCSAG00000014322)	ADORA1 (ENSCSAG00000014298)	MYOG (ENSCSAG00000014291) ##22	PPFIA4 (ENSCSAG00000014279) ##26	TMEM183A (ENSCSAG00000014258)	CYB5R1 (ENSCSAG00000014235)	ADIPOR1 (ENSCSAG00000014228)	KLHL12 (ENSCSAG00000014223)	RABIF (ENSCSAG00000014218)	ENSCSAG00000014206	KDM5B (ENSCSAG00000014155)	SYT2 (ENSCSAG00000014146)	PPP1R12B (ENSCSAG00000014142)	UBE2T (ENSCSAG00000014134)	LGR6 (ENSCSAG00000014130)	PTPN7 (ENSCSAG00000014118)	ARL8A (ENSCSAG00000014093)	GPR37L1 (ENSCSAG00000014085)
Rhinopithecus	ANCESTRAL SPECIES	33					ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00950000182891.a.a.b.a.a.a.a	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310.j.a.a	ENSGT00940000163962	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00390000011085	ENSGT00940000157021	ENSGT00940000153725.a.b.a	ENSGT00420000029858	ENSGT00420000029847	ENSGT00940000156370	ENSGT00390000018876	ENSGT00390000009456
Golden snub-nosed monkey	MODERN SPECIES	2113							OPTC (ENSRROG00000037583)	PRELP (ENSRROG00000039664)	ENSRROG00000028516	FMOD (ENSRROG00000034712)	BTG2 (ENSRROG00000003449)	CHIT1 (ENSRROG00000040966)	CHI3L1 (ENSRROG00000033624)	MYBPH (ENSRROG00000024239)	ADORA1 (ENSRROG00000028863)	MYOG (ENSRROG00000036484) ##22	PPFIA4 (ENSRROG00000027572) ##26	ENSRROG00000040099	CYB5R1 (ENSRROG00000035635)	ADIPOR1 (ENSRROG00000032492)	KLHL12 (ENSRROG00000044766)	RABIF (ENSRROG00000039337)	ENSRROG00000039431	KDM5B (ENSRROG00000032595)	ENSRROG00000028600	SYT2 (ENSRROG00000038910)	PPP1R12B (ENSRROG00000039475)	ENSRROG00000006486	ENSRROG00000038880	UBE2T (ENSRROG00000037253)	LGR6 (ENSRROG00000035260)
Black snub-nosed monkey	MODERN SPECIES	1534				LAX1 (ENSRBIG00000032142)	ENSRBIG00000041287	ATP2B4 (ENSRBIG00000031557)	OPTC (ENSRBIG00000040833)	PRELP (ENSRBIG00000044151)	ENSRBIG00000023962	FMOD (ENSRBIG00000040401)	BTG2 (ENSRBIG00000034514)	CHIT1 (ENSRBIG00000038487)	CHI3L1 (ENSRBIG00000043375)	MYBPH (ENSRBIG00000027837)	ADORA1 (ENSRBIG00000021993)	MYOG (ENSRBIG00000040040) ##22	PPFIA4 (ENSRBIG00000040459) ##26	ENSRBIG00000012596	TNIK (ENSRBIG00000043278)	ENSRBIG00000009658	ENSRBIG00000026426	EIF5A2 (ENSRBIG00000044911)	ENSRBIG00000031400	ENSRBIG00000036103
Platyrrhini	ANCESTRAL SPECIES	24	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a.e	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00910000146854.b	ENSGT00390000016889	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000156705.h	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979
Cebidae	ANCESTRAL SPECIES	23	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a.e	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00910000146854.b	ENSGT00390000016889	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000156705.h	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979
Marmoset	MODERN SPECIES	10	ETNK2 (ENSCJAG00000016828)	SOX13 (ENSCJAG00000016794)	SNRPE (ENSCJAG00000046841)	ENSCJAG00000006671	LAX1 (ENSCJAG00000006659)	ATP2B4 (ENSCJAG00000006561)	ENSCJAG00000080830	OPTC (ENSCJAG00000006558)	PRELP (ENSCJAG00000006543)	FMOD (ENSCJAG00000006520)	BTG2 (ENSCJAG00000006514)	CHI3L1 (ENSCJAG00000006483)	MYBPH (ENSCJAG00000006451)	ADORA1 (ENSCJAG00000079551)	ENSCJAG00000084402	MYOG (ENSCJAG00000006443) ##22	PPFIA4 (ENSCJAG00000006353) ##26	ENSCJAG00000006297	ENSCJAG00000071661	CYB5R1 (ENSCJAG00000079557)	ADIPOR1 (ENSCJAG00000006268)	KLHL12 (ENSCJAG00000006231)	RABIF (ENSCJAG00000068955)	KDM5B (ENSCJAG00000006050)	SYT2 (ENSCJAG00000079960)	PPP1R12B (ENSCJAG00000005949)	UBE2T (ENSCJAG00000005917)	ENSCJAG00000074832	LGR6 (ENSCJAG00000005906)	PTPN7 (ENSCJAG00000005882)	ARL8A (ENSCJAG00000005865)
Cebidae_a	ANCESTRAL SPECIES	11	ENSGT00390000012818.o.a.a.a.b	ENSGT00390000012818.o.b	ENSGT01010000222851.a	ENSGT00920000149095.a.e	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00910000146854.b	ENSGT00390000016889	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000156705.h	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979	ENSGT00940000159657.d
Capuchin	MODERN SPECIES	38	SOX13 (ENSCCAG00000030362)	SNRPE (ENSCCAG00000020762)	ENSCCAG00000036323	ENSCCAG00000023466	ZBED6 (ENSCCAG00000019665)	LAX1 (ENSCCAG00000000404)	ATP2B4 (ENSCCAG00000027026)	OPTC (ENSCCAG00000033174)	PRELP (ENSCCAG00000025891)	FMOD (ENSCCAG00000024613)	BTG2 (ENSCCAG00000021623)	CHIT1 (ENSCCAG00000031129)	CHI3L1 (ENSCCAG00000028232)	MYBPH (ENSCCAG00000026738)	ADORA1 (ENSCCAG00000030903)	MYOG (ENSCCAG00000036804) ##22	PPFIA4 (ENSCCAG00000023090) ##26	TMEM183A (ENSCCAG00000036374)	CYB5R1 (ENSCCAG00000036166)	ADIPOR1 (ENSCCAG00000023574)	KLHL12 (ENSCCAG00000034014)	ENSCCAG00000029325	RABIF (ENSCCAG00000030538)	KDM5B (ENSCCAG00000029643)	SYT2 (ENSCCAG00000028329)	ENSCCAG00000003344	PPP1R12B (ENSCCAG00000021815)
Bolivian squirrel monkey	MODERN SPECIES	141	SOX13 (ENSSBOG00000025192)	ENSSBOG00000022782	ENSSBOG00000034982	ENSSBOG00000033376	ENSSBOG00000034158	LAX1 (ENSSBOG00000028944)	ATP2B4 (ENSSBOG00000022856)	OPTC (ENSSBOG00000022832)	PRELP (ENSSBOG00000033985)	FMOD (ENSSBOG00000026354)	BTG2 (ENSSBOG00000019017)	CHIT1 (ENSSBOG00000001992)	CHI3L1 (ENSSBOG00000034150)	MYBPH (ENSSBOG00000021367)	ADORA1 (ENSSBOG00000012577)	MYOG (ENSSBOG00000015922) ##22	PPFIA4 (ENSSBOG00000028434) ##26	TMEM183A (ENSSBOG00000023290)	CYB5R1 (ENSSBOG00000026378)	ENSSBOG00000032665	ENSSBOG00000023668	KLHL12 (ENSSBOG00000028550)	RABIF (ENSSBOG00000035749)	ENSSBOG00000024464	KDM5B (ENSSBOG00000034252)	SYT2 (ENSSBOG00000018741)	ENSSBOG00000033416	PPP1R12B (ENSSBOG00000032116)	UBE2T (ENSSBOG00000016303)	LGR6 (ENSSBOG00000031017)	PTPN7 (ENSSBOG00000006743)
Mas night monkey	MODERN SPECIES	958	SOX13 (ENSANAG00000036193)	SNRPE (ENSANAG00000036379)	ENSANAG00000033622	ENSANAG00000034973	ZBED6 (ENSANAG00000017840)	LAX1 (ENSANAG00000034140)	ATP2B4 (ENSANAG00000033579)	OPTC (ENSANAG00000037909)	PRELP (ENSANAG00000034042)	FMOD (ENSANAG00000033755)	BTG2 (ENSANAG00000037468)	CHIT1 (ENSANAG00000035638)	CHI3L1 (ENSANAG00000032956)	MYBPH (ENSANAG00000036752)	ADORA1 (ENSANAG00000037584)	MYOG (ENSANAG00000026197) ##22	PPFIA4 (ENSANAG00000024014) ##26	TMEM183A (ENSANAG00000032324)	ENSANAG00000025915	CYB5R1 (ENSANAG00000020782)	ADIPOR1 (ENSANAG00000032987)	ENSANAG00000033364	KLHL12 (ENSANAG00000033948)	RABIF (ENSANAG00000031550)	KDM5B (ENSANAG00000032374)	ENSANAG00000018584	SYT2 (ENSANAG00000029864)	ENSANAG00000026836	PPP1R12B (ENSANAG00000035134)	UBE2T (ENSANAG00000027019)	LGR6 (ENSANAG00000033706)
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939
Tree shrew	MODERN SPECIES	4420																MYOG (ENSTBEG00000017364) ##22	PPFIA4 (ENSTBEG00000016660) ##26	TMEM183A (ENSTBEG00000016573)	ENSTBEG00000016185	CYB5R1 (ENSTBEG00000015477)	ADIPOR1 (ENSTBEG00000015149)	KLHL12 (ENSTBEG00000014866)	RABIF (ENSTBEG00000014840)
Glires	ANCESTRAL SPECIES		ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939
Lagomorpha	ANCESTRAL SPECIES	15	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000183165.b.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979	ENSGT00940000159657.d
Pika	MODERN SPECIES	1852								ENSOPRG00000014839	PRELP (ENSOPRG00000014833)	FMOD (ENSOPRG00000014829)	ENSOPRG00000014825	CHIT1 (ENSOPRG00000014800)	CHI3L1 (ENSOPRG00000014788)	ENSOPRG00000014780	ADORA1 (ENSOPRG00000014766)	MYOG (ENSOPRG00000014753) ##22	ENSOPRG00000014707 ##26
Rabbit	MODERN SPECIES	7	ENSOCUG00000032632	ENSOCUG00000000251	ZBED6 (ENSOCUG00000024739)	ENSOCUG00000003715	ENSOCUG00000006539	OPTC (ENSOCUG00000006753)	PRELP (ENSOCUG00000009707)	FMOD (ENSOCUG00000009702)	BTG2 (ENSOCUG00000004422)	ENSOCUG00000027402	CHIT1 (ENSOCUG00000011027)	CHI3L1 (ENSOCUG00000026988)	MYBPH (ENSOCUG00000011021)	ADORA1 (ENSOCUG00000011017)	PPFIA4 (ENSOCUG00000027672) ##26	MYOG (ENSOCUG00000011548) ##22	TMEM183A (ENSOCUG00000006191)	ENSOCUG00000016812	CYB5R1 (ENSOCUG00000016799)	KLHL12 (ENSOCUG00000009219)	RABIF (ENSOCUG00000002207)	ENSOCUG00000022112	ENSOCUG00000008022	KDM5B (ENSOCUG00000008003)	ENSOCUG00000030485	SYT2 (ENSOCUG00000022514)	PPP1R12B (ENSOCUG00000003236)	UBE2T (ENSOCUG00000010249)	LGR6 (ENSOCUG00000010236)	ENSOCUG00000039667	ENSOCUG00000008258
Rodentia	ANCESTRAL SPECIES		ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939
Rodentia_B	ANCESTRAL SPECIES		ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Kangaroo rat	MODERN SPECIES	354	Etnk2 (ENSDORG00000003410)	Sox13 (ENSDORG00000003409)	ENSDORG00000023819	ENSDORG00000003463	Zbed6 (ENSDORG00000025233)	ENSDORG00000014621	Atp2b4 (ENSDORG00000014618)	Optc (ENSDORG00000003489)	Prelp (ENSDORG00000003488)	Fmod (ENSDORG00000029378)	Btg2 (ENSDORG00000025474)	Chit1 (ENSDORG00000010764)	Chil1 (ENSDORG00000002127)	Mybph (ENSDORG00000002129)	Adora1 (ENSDORG00000027122)	Myog (ENSDORG00000029186) ##22	Ppfia4 (ENSDORG00000016503) ##26	Tmem183a (ENSDORG00000016500)	ENSDORG00000025988	Cyb5r1 (ENSDORG00000007313)	Adipor1 (ENSDORG00000006876)	ENSDORG00000008042	Klhl12 (ENSDORG00000004282)	Rabif (ENSDORG00000000851)	Kdm5b (ENSDORG00000003088)	Syt2 (ENSDORG00000002073)	ENSDORG00000025873	ENSDORG00000025294	Ube2t (ENSDORG00000027388)	Lgr6 (ENSDORG00000005413)	Ptpn7 (ENSDORG00000010483)
Myomorpha	ANCESTRAL SPECIES	16	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Muroidea	ANCESTRAL SPECIES	9	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Muroidea_A	ANCESTRAL SPECIES	12	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Cricetidae	ANCESTRAL SPECIES	13	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979	ENSGT00940000159657.d
Golden Hamster	MODERN SPECIES	656	Kiss1 (ENSMAUG00000013440)	Ren1 (ENSMAUG00000019491)	Etnk2 (ENSMAUG00000001010)	Sox13 (ENSMAUG00000001464)	ENSMAUG00000014663	Lax1 (ENSMAUG00000013607)	Atp2b4 (ENSMAUG00000007564)	Optc (ENSMAUG00000020983)	Prelp (ENSMAUG00000020098)	Fmod (ENSMAUG00000011458)	Btg2 (ENSMAUG00000016930)	Chit1 (ENSMAUG00000009963)	Chil1 (ENSMAUG00000014596)	Mybph (ENSMAUG00000020580)	Adora1 (ENSMAUG00000018351)	Myog (ENSMAUG00000019653) ##22	Ppfia4 (ENSMAUG00000005666) ##26	Tmem183a (ENSMAUG00000015202)	Mgat4f (ENSMAUG00000000514)	Cyb5r1 (ENSMAUG00000015345)	Adipor1 (ENSMAUG00000003973)	Klhl12 (ENSMAUG00000020212)	Rabif (ENSMAUG00000019661)	Kdm5b (ENSMAUG00000006764)	ENSMAUG00000012598	Syt2 (ENSMAUG00000013331)	ENSMAUG00000015464	ENSMAUG00000020239	Ube2t (ENSMAUG00000000629)	Lgr6 (ENSMAUG00000004284)	Ptpn7 (ENSMAUG00000019129)
Chinese hamster chok1gshd	MODERN SPECIES	2	Etnk2 (ENSCGRG00001019568)	Sox13 (ENSCGRG00001024218)	Snrpe (ENSCGRG00001019074)	Zc3h11a (ENSCGRG00001014561)	Zbed6 (ENSCGRG00001003149)	Lax1 (ENSCGRG00001019553)	Atp2b4 (ENSCGRG00001011759)	Optc (ENSCGRG00001022912)	Prelp (ENSCGRG00001015698)	Fmod (ENSCGRG00001015148)	Btg2 (ENSCGRG00001018732)	Chit1 (ENSCGRG00001007003)	Chil1 (ENSCGRG00001022520)	Mybph (ENSCGRG00001015181)	Adora1 (ENSCGRG00001000698)	Myog (ENSCGRG00001024598) ##22	Ppfia4 (ENSCGRG00001024386) ##26	Tmem183a (ENSCGRG00001008850)	Mgat4f (ENSCGRG00001004313)	Cyb5r1 (ENSCGRG00001024525)	Adipor1 (ENSCGRG00001024118)	Klhl12 (ENSCGRG00001007862)	Rabif (ENSCGRG00001004862)	Kdm5b (ENSCGRG00001023924)	Syt2 (ENSCGRG00001014761)	Ppp1r12b (ENSCGRG00001018937)	Ube2t (ENSCGRG00001005822)	Lgr6 (ENSCGRG00001023986)	Ptprv (ENSCGRG00001005400)	Ptpn7 (ENSCGRG00001022550)	Arl8a (ENSCGRG00001020777)
Cricetidae_B	ANCESTRAL SPECIES	8	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Prairie vole	MODERN SPECIES	14	Ren1 (ENSMOCG00000012713)	Etnk2 (ENSMOCG00000016784)	Sox13 (ENSMOCG00000004872)	Snrpe (ENSMOCG00000019341)	ENSMOCG00000018144	Zbed6 (ENSMOCG00000001415)	Lax1 (ENSMOCG00000019077)	Atp2b4 (ENSMOCG00000001360)	Optc (ENSMOCG00000002786)	Prelp (ENSMOCG00000012807)	Fmod (ENSMOCG00000015819)	Btg2 (ENSMOCG00000017852)	Chil1 (ENSMOCG00000000618)	Mybph (ENSMOCG00000016369)	Adora1 (ENSMOCG00000017725)	Myog (ENSMOCG00000021956) ##22	Ppfia4 (ENSMOCG00000023033) ##26	Tmem183a (ENSMOCG00000001009)	Mgat4f (ENSMOCG00000006511)	Cyb5r1 (ENSMOCG00000011285)	Adipor1 (ENSMOCG00000011542)	Klhl12 (ENSMOCG00000018343)	Rabif (ENSMOCG00000007673)	Mgat4e (ENSMOCG00000012186)	Kdm5b (ENSMOCG00000014263)	Syt2 (ENSMOCG00000018862)	ENSMOCG00000008655	ENSMOCG00000017473	Ube2t (ENSMOCG00000021471)	Lgr6 (ENSMOCG00000001284)	Ptprv (ENSMOCG00000016711)
Northern American deer mouse	MODERN SPECIES	2	Etnk2 (ENSPEMG00000001456)	Sox13 (ENSPEMG00000011632)	Snrpe (ENSPEMG00000008031)	ENSPEMG00000007494	Zbed6 (ENSPEMG00000025595)	Lax1 (ENSPEMG00000025679)	Atp2b4 (ENSPEMG00000015469)	Optc (ENSPEMG00000001092)	Prelp (ENSPEMG00000011488)	Fmod (ENSPEMG00000014900)	Btg2 (ENSPEMG00000026893)	Chit1 (ENSPEMG00000001900)	Chil1 (ENSPEMG00000010614)	Mybph (ENSPEMG00000018187)	Adora1 (ENSPEMG00000031414)	Myog (ENSPEMG00000006258) ##22	Ppfia4 (ENSPEMG00000008757) ##26	Tmem183a (ENSPEMG00000011541)	Mgat4f (ENSPEMG00000017545)	Cyb5r1 (ENSPEMG00000016852)	Adipor1 (ENSPEMG00000008869)	Klhl12 (ENSPEMG00000017400)	Rabif (ENSPEMG00000027280)	ENSPEMG00000030133	Kdm5b (ENSPEMG00000019245)	Syt2 (ENSPEMG00000029473)	Ppp1r12b (ENSPEMG00000025138)	Ube2t (ENSPEMG00000017855)	Lgr6 (ENSPEMG00000010971)	Ptprv (ENSPEMG00000010006)	Ptpn7 (ENSPEMG00000017641)
Murinae	ANCESTRAL SPECIES	11	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Mus	ANCESTRAL SPECIES	5	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Mus_A	ANCESTRAL SPECIES	5	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Ryukyu mouse	MODERN SPECIES		Sox13 (MGP_CAROLIEiJ_G0014602)	Snrpe (MGP_CAROLIEiJ_G0014603)	Zc3h11a (MGP_CAROLIEiJ_G0014604)	MGP_CAROLIEiJ_G0014605	MGP_CAROLIEiJ_G0014606	Lax1 (MGP_CAROLIEiJ_G0014607)	Atp2b4 (MGP_CAROLIEiJ_G0014608)	Optc (MGP_CAROLIEiJ_G0014609)	Prelp (MGP_CAROLIEiJ_G0014610)	Fmod (MGP_CAROLIEiJ_G0014611)	Btg2 (MGP_CAROLIEiJ_G0014612)	Chit1 (MGP_CAROLIEiJ_G0014613)	Chil1 (MGP_CAROLIEiJ_G0014614)	Mybph (MGP_CAROLIEiJ_G0014615)	Adora1 (MGP_CAROLIEiJ_G0014616)	Myog (MGP_CAROLIEiJ_G0014617) ##22	Ppfia4 (MGP_CAROLIEiJ_G0014618) ##26	Tmem183a (MGP_CAROLIEiJ_G0014619)	Mgat4f (MGP_CAROLIEiJ_G0014620)	Cyb5r1 (MGP_CAROLIEiJ_G0014621)	MGP_CAROLIEiJ_G0014622	Klhl12 (MGP_CAROLIEiJ_G0014623)	Rabif (MGP_CAROLIEiJ_G0014624)	MGP_CAROLIEiJ_G0014625	Kdm5b (MGP_CAROLIEiJ_G0014626)	Syt2 (MGP_CAROLIEiJ_G0014627)	Ppp1r12b (MGP_CAROLIEiJ_G0014628)	Ube2t (MGP_CAROLIEiJ_G0014629)	Lgr6 (MGP_CAROLIEiJ_G0014630)	Ptpn7 (MGP_CAROLIEiJ_G0014631)	Arl8a (MGP_CAROLIEiJ_G0014632)
Mus_B	ANCESTRAL SPECIES	7	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Mus_C	ANCESTRAL SPECIES	1	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Steppe mouse	MODERN SPECIES	3299	Sox13 (ENSMSIG00000018829)	Snrpe (ENSMSIG00000018783)	Zc3h11a (ENSMSIG00000018739)	Zbed6 (ENSMSIG00000018721)	Lax1 (ENSMSIG00000018697)	Atp2b4 (ENSMSIG00000018529)	Optc (ENSMSIG00000018410)	Prelp (ENSMSIG00000018392)	Fmod (ENSMSIG00000018385)	Btg2 (ENSMSIG00000018371)	ENSMSIG00000018348	Chit1 (ENSMSIG00000018191)	Chil1 (ENSMSIG00000018094)	Mybph (ENSMSIG00000018048)	Adora1 (ENSMSIG00000018036)	Myog (ENSMSIG00000018017) ##22	Ppfia4 (ENSMSIG00000017850) ##26	Mgat4f (ENSMSIG00000017814)	ENSMSIG00000017789	Cyb5r1 (ENSMSIG00000017771)	Adipor1 (ENSMSIG00000017739)	Klhl12 (ENSMSIG00000017676)	Mgat4e (ENSMSIG00000017668)	Kdm5b (ENSMSIG00000017529)	Syt2 (ENSMSIG00000017466)	Ppp1r12b (ENSMSIG00000017245)	ENSMSIG00000017237	Ube2t (ENSMSIG00000017228)	Lgr6 (ENSMSIG00000017146)	ENSMSIG00000017139	Ptprv (ENSMSIG00000017000)
spretus	MODERN SPECIES		Sox13 (MGP_SPRETEiJ_G0015409)	Snrpe (MGP_SPRETEiJ_G0015410)	Zc3h11a (MGP_SPRETEiJ_G0015411)	MGP_SPRETEiJ_G0015412	MGP_SPRETEiJ_G0015413	Lax1 (MGP_SPRETEiJ_G0015414)	Atp2b4 (MGP_SPRETEiJ_G0015415)	MGP_SPRETEiJ_G0015416	Prelp (MGP_SPRETEiJ_G0015417)	Fmod (MGP_SPRETEiJ_G0015418)	Btg2 (MGP_SPRETEiJ_G0015419)	Chit1 (MGP_SPRETEiJ_G0015420)	Chil1 (MGP_SPRETEiJ_G0015421)	Mybph (MGP_SPRETEiJ_G0015422)	Adora1 (MGP_SPRETEiJ_G0015423)	Myog (MGP_SPRETEiJ_G0015424) ##22	Ppfia4 (MGP_SPRETEiJ_G0015425) ##26	Tmem183a (MGP_SPRETEiJ_G0015426)	Mgat4f (MGP_SPRETEiJ_G0015427)	Cyb5r1 (MGP_SPRETEiJ_G0015428)	Adipor1 (MGP_SPRETEiJ_G0015429)	Klhl12 (MGP_SPRETEiJ_G0015430)	Rabif (MGP_SPRETEiJ_G0015431)	Mgat4e (MGP_SPRETEiJ_G0015432)	Kdm5b (MGP_SPRETEiJ_G0015433)	Ppp1r12b (MGP_SPRETEiJ_G0015435)	Ube2t (MGP_SPRETEiJ_G0015436)	Lgr6 (MGP_SPRETEiJ_G0015437)	Ptpn7 (MGP_SPRETEiJ_G0015438)	Arl8a (MGP_SPRETEiJ_G0015439)	Gpr37l1 (MGP_SPRETEiJ_G0015440)
Mouse	MODERN SPECIES		Etnk2 (ENSMUSG00000070644)	Sox13 (ENSMUSG00000070643)	Snrpe (ENSMUSG00000090553)	Zc3h11a (ENSMUSG00000102976)	Zbed6 (ENSMUSG00000094410)	Lax1 (ENSMUSG00000051998)	Atp2b4 (ENSMUSG00000026463)	Optc (ENSMUSG00000010311)	Prelp (ENSMUSG00000041577)	Fmod (ENSMUSG00000041559)	Btg2 (ENSMUSG00000020423)	Chit1 (ENSMUSG00000026450)	Chil1 (ENSMUSG00000064246)	Mybph (ENSMUSG00000042451)	Adora1 (ENSMUSG00000042429)	Myog (ENSMUSG00000026459) ##22	Ppfia4 (ENSMUSG00000026458) ##26	Tmem183a (ENSMUSG00000042305)	Mgat4f (ENSMUSG00000050526)	Cyb5r1 (ENSMUSG00000026456)	Adipor1 (ENSMUSG00000026457)	Klhl12 (ENSMUSG00000026455)	Rabif (ENSMUSG00000042229)	Mgat4e (ENSMUSG00000046367)	Kdm5b (ENSMUSG00000042207)	Syt2 (ENSMUSG00000026452)	Ppp1r12b (ENSMUSG00000073557)	Ube2t (ENSMUSG00000026429)	Lgr6 (ENSMUSG00000042793)	Ptprv (ENSMUSG00000097993)	Ptpn7 (ENSMUSG00000031506)
Shrew mouse	MODERN SPECIES	18	Sox13 (MGP_PahariEiJ_G0027838)	Snrpe (MGP_PahariEiJ_G0027839)	Zc3h11a (MGP_PahariEiJ_G0027840)	MGP_PahariEiJ_G0027841	MGP_PahariEiJ_G0027842	Lax1 (MGP_PahariEiJ_G0027843)	MGP_PahariEiJ_G0027844	Optc (MGP_PahariEiJ_G0027845)	Prelp (MGP_PahariEiJ_G0027846)	Fmod (MGP_PahariEiJ_G0027847)	Btg2 (MGP_PahariEiJ_G0027848)	Chit1 (MGP_PahariEiJ_G0027849)	Chil1 (MGP_PahariEiJ_G0027850)	Mybph (MGP_PahariEiJ_G0027851)	Adora1 (MGP_PahariEiJ_G0027852)	Myog (MGP_PahariEiJ_G0027853) ##22	Ppfia4 (MGP_PahariEiJ_G0027854) ##26	Tmem183a (MGP_PahariEiJ_G0027855)	Mgat4f (MGP_PahariEiJ_G0027856)	Cyb5r1 (MGP_PahariEiJ_G0027857)	Adipor1 (MGP_PahariEiJ_G0027858)	Klhl12 (MGP_PahariEiJ_G0027859)	Rabif (MGP_PahariEiJ_G0027860)	Mgat4e (MGP_PahariEiJ_G0027861)	Kdm5b (MGP_PahariEiJ_G0027862)	Syt2 (MGP_PahariEiJ_G0027863)	Ppp1r12b (MGP_PahariEiJ_G0027864)	Ube2t (MGP_PahariEiJ_G0027865)	Lgr6 (MGP_PahariEiJ_G0027866)	Ptpn7 (MGP_PahariEiJ_G0027867)	Arl8a (MGP_PahariEiJ_G0027868)
Rat	MODERN SPECIES	4	Etnk2 (ENSRNOG00000028368)	Sox13 (ENSRNOG00000028353)	LOC498231 (ENSRNOG00000029418)	Snrpe (ENSRNOG00000067587)	Zbed6 (ENSRNOG00000053210)	Lax1 (ENSRNOG00000028250)	Atp2b4 (ENSRNOG00000003031)	Optc (ENSRNOG00000003059)	Prelp (ENSRNOG00000003120)	Fmod (ENSRNOG00000003183)	Btg2 (ENSRNOG00000003300)	Chit1 (ENSRNOG00000028072)	Chi3l1 (ENSRNOG00000053272)	Mybph (ENSRNOG00000003336)	Adora1 (ENSRNOG00000003442)	Myog (ENSRNOG00000030743) ##22	Ppfia4 (ENSRNOG00000003494) ##26	Tmem183a (ENSRNOG00000003594)	Mgat4e-like (ENSRNOG00000027702)	Cyb5r1 (ENSRNOG00000003973)	Adipor1 (ENSRNOG00000004143)	Klhl12 (ENSRNOG00000004193)	Ndufv3-ps1 (ENSRNOG00000027593)	Rabif (ENSRNOG00000004424)	Mgat4e (ENSRNOG00000039568)	Kdm5b (ENSRNOG00000060544)	Syt2 (ENSRNOG00000004756)	Ppp1r12b (ENSRNOG00000051440)	ENSRNOG00000068257	Ube2t (ENSRNOG00000005038)	Lgr6 (ENSRNOG00000005093)
Upper Galilee mountains blind mole rat	MODERN SPECIES	699	Ren1 (ENSNGAG00000022621)	Etnk2 (ENSNGAG00000022245)	Sox13 (ENSNGAG00000010564)	Snrpe (ENSNGAG00000021588)	ENSNGAG00000001706	Zbed6 (ENSNGAG00000014592)	Lax1 (ENSNGAG00000021147)	Atp2b4 (ENSNGAG00000005391)	Prelp (ENSNGAG00000014170)	Fmod (ENSNGAG00000013706)	Btg2 (ENSNGAG00000022776)	Chit1 (ENSNGAG00000021293)	Chil1 (ENSNGAG00000023060)	Mybph (ENSNGAG00000014067)	Adora1 (ENSNGAG00000023414)	Myog (ENSNGAG00000010861) ##22	Ppfia4 (ENSNGAG00000024254) ##26	ENSNGAG00000023538	Tmem183a (ENSNGAG00000023196)	Cyb5r1 (ENSNGAG00000012253)	Adipor1 (ENSNGAG00000022932)	ENSNGAG00000021565	Rabif (ENSNGAG00000018113)	ENSNGAG00000024192	ENSNGAG00000024084	Kdm5b (ENSNGAG00000011849)	Syt2 (ENSNGAG00000024246)	ENSNGAG00000019794	ENSNGAG00000024117	Ube2t (ENSNGAG00000024162)	Lgr6 (ENSNGAG00000006200)
Lesser Egyptian jerboa	MODERN SPECIES	193	Ccl22 (ENSJJAG00000009625)	ENSJJAG00000008973	Ccl17 (ENSJJAG00000007905)	Ciapin1 (ENSJJAG00000007168)	Coq9 (ENSJJAG00000023282)	Polr2c (ENSJJAG00000023057)	Dok4 (ENSJJAG00000022664)	Atp2b4 (ENSJJAG00000021638)	Optc (ENSJJAG00000016594)	Prelp (ENSJJAG00000015790)	Fmod (ENSJJAG00000015609)	Btg2 (ENSJJAG00000014569)	Chil1 (ENSJJAG00000014064)	Mybph (ENSJJAG00000014452)	Adora1 (ENSJJAG00000013850)	Myog (ENSJJAG00000013746) ##22	Ppfia4 (ENSJJAG00000011900) ##26	ENSJJAG00000010576	ENSJJAG00000010495	Cyb5r1 (ENSJJAG00000008154)	ENSJJAG00000007092	Klhl12 (ENSJJAG00000021531)	Rabif (ENSJJAG00000020396)	Kdm5b (ENSJJAG00000011219)	Syt2 (ENSJJAG00000009871)	ENSJJAG00000000250	ENSJJAG00000000055	Lgr6 (ENSJJAG00000023003)	Ptpn7 (ENSJJAG00000020438)	Arl8a (ENSJJAG00000023105)	Gpr37l1 (ENSJJAG00000022800)
Rodentia_A	ANCESTRAL SPECIES		ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939
Sciuridae	ANCESTRAL SPECIES		ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079
Marmotini	ANCESTRAL SPECIES	60	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079
Marmotini_b	ANCESTRAL SPECIES	70	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979
Squirrel	MODERN SPECIES	167	ETNK2 (ENSSTOG00000015115)	SOX13 (ENSSTOG00000015089)	ENSSTOG00000031197	ENSSTOG00000000736	ZBED6 (ENSSTOG00000022677)	LAX1 (ENSSTOG00000022601)	ATP2B4 (ENSSTOG00000010657)	OPTC (ENSSTOG00000011562)	PRELP (ENSSTOG00000011558)	FMOD (ENSSTOG00000023921)	BTG2 (ENSSTOG00000024859)	CHIT1 (ENSSTOG00000015059)	CHI3L1 (ENSSTOG00000015436)	MYBPH (ENSSTOG00000005228)	ADORA1 (ENSSTOG00000021164)	MYOG (ENSSTOG00000028049) ##22	PPFIA4 (ENSSTOG00000020313) ##26	ENSSTOG00000012466	ENSSTOG00000028547	CYB5R1 (ENSSTOG00000021865)	ADIPOR1 (ENSSTOG00000015459)	KLHL12 (ENSSTOG00000015452)	RABIF (ENSSTOG00000015450)	ENSSTOG00000011106	ENSSTOG00000028169	KDM5B (ENSSTOG00000000372)	SYT2 (ENSSTOG00000010279)	PPP1R12B (ENSSTOG00000010248)	UBE2T (ENSSTOG00000010421)	LGR6 (ENSSTOG00000027585)	PTPN7 (ENSSTOG00000027740)
Arctic ground squirrel	MODERN SPECIES	181	REN (ENSUPAG00010007054)	ETNK2 (ENSUPAG00010007088)	SOX13 (ENSUPAG00010007097)	SNRPE (ENSUPAG00010007135)	ENSUPAG00010007210	LAX1 (ENSUPAG00010007396)	ATP2B4 (ENSUPAG00010007428)	OPTC (ENSUPAG00010007813)	PRELP (ENSUPAG00010007921)	FMOD (ENSUPAG00010007930)	BTG2 (ENSUPAG00010007940)	CHIT1 (ENSUPAG00010007952)	CHI3L1 (ENSUPAG00010008005)	MYBPH (ENSUPAG00010008035)	ADORA1 (ENSUPAG00010008063)	MYOG (ENSUPAG00010008083) ##22	PPFIA4 (ENSUPAG00010008098) ##26	TMEM183A (ENSUPAG00010008332)	ENSUPAG00010008346	ENSUPAG00010008348	ENSUPAG00010008352	CYB5R1 (ENSUPAG00010008356)	ADIPOR1 (ENSUPAG00010008368)	KLHL12 (ENSUPAG00010008378)	RABIF (ENSUPAG00010008393)	ENSUPAG00010008394	ENSUPAG00010008405	KDM5B (ENSUPAG00010008412)	SYT2 (ENSUPAG00010008425)	PPP1R12B (ENSUPAG00010008435)	UBE2T (ENSUPAG00010008502)
Alpin marmot	MODERN SPECIES	12	REN (ENSMMMG00000013806)	ETNK2 (ENSMMMG00000013779)	SOX13 (ENSMMMG00000013739)	SNRPE (ENSMMMG00000013676)	ENSMMMG00000013645	LAX1 (ENSMMMG00000013640)	ATP2B4 (ENSMMMG00000013598)	OPTC (ENSMMMG00000013524)	PRELP (ENSMMMG00000013516)	FMOD (ENSMMMG00000013497)	BTG2 (ENSMMMG00000013489)	CHIT1 (ENSMMMG00000013470)	CHI3L1 (ENSMMMG00000013425)	MYBPH (ENSMMMG00000013400)	ADORA1 (ENSMMMG00000013390)	MYOG (ENSMMMG00000013364) ##22	PPFIA4 (ENSMMMG00000013275) ##26	TMEM183A (ENSMMMG00000013263)	ENSMMMG00000013254	ENSMMMG00000013243	ENSMMMG00000013235	CYB5R1 (ENSMMMG00000013214)	ADIPOR1 (ENSMMMG00000013196)	KLHL12 (ENSMMMG00000013152)	RABIF (ENSMMMG00000013149)	ENSMMMG00000013130	ENSMMMG00000013124	KDM5B (ENSMMMG00000013071)	SYT2 (ENSMMMG00000013057)	PPP1R12B (ENSMMMG00000012900)	UBE2T (ENSMMMG00000012885)
Eurasian red squirrel	MODERN SPECIES	3	ENSSVLG00005007769	SNRPE (ENSSVLG00005007786)	ENSSVLG00005007861	ZBED6 (ENSSVLG00005007904)	LAX1 (ENSSVLG00005007924)	ATP2B4 (ENSSVLG00005007980)	OPTC (ENSSVLG00005008040)	PRELP (ENSSVLG00005008083)	FMOD (ENSSVLG00005008105)	BTG2 (ENSSVLG00005008142)	ENSSVLG00005008166	ENSSVLG00005008190	CHI3L1 (ENSSVLG00005008207)	MYBPH (ENSSVLG00005008287)	ENSSVLG00005008399	MYOG (ENSSVLG00005008444) ##22	PPFIA4 (ENSSVLG00005008501) ##26	TMEM183A (ENSSVLG00005008814)	ENSSVLG00005008850	ENSSVLG00005008880	ENSSVLG00005008903	ENSSVLG00005008934	CYB5R1 (ENSSVLG00005008962)	ADIPOR1 (ENSSVLG00005008999)	KLHL12 (ENSSVLG00005009054)	RABIF (ENSSVLG00005009111)	ENSSVLG00005009143	ENSSVLG00005009162	KDM5B (ENSSVLG00005009254)	SYT2 (ENSSVLG00005009529)	PPP1R12B (ENSSVLG00005009724)
Hystricomorpha	ANCESTRAL SPECIES	29	ENSGT00940000158759	ENSGT00390000012818.o.b	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.q.a	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000183165.b.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939
Hystricomorpha_a	ANCESTRAL SPECIES	13	ENSGT00940000158759	ENSGT00390000012818.o.b	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.q.a	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Hystricomorpha_b	ANCESTRAL SPECIES	4	ENSGT00940000158759	ENSGT00390000012818.o.b	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Long-tailed chinchilla	MODERN SPECIES	113	ETNK2 (ENSCLAG00000012729)	SOX13 (ENSCLAG00000012187)	ENSCLAG00000013355	ENSCLAG00000011966	ZBED6 (ENSCLAG00000017956)	LAX1 (ENSCLAG00000014362)	ATP2B4 (ENSCLAG00000012025)	OPTC (ENSCLAG00000011555)	PRELP (ENSCLAG00000013735)	FMOD (ENSCLAG00000013270)	BTG2 (ENSCLAG00000011760)	CHIT1 (ENSCLAG00000010708)	CHI3L1 (ENSCLAG00000013593)	MYBPH (ENSCLAG00000011779)	ADORA1 (ENSCLAG00000010628)	MYOG (ENSCLAG00000013979) ##22	PPFIA4 (ENSCLAG00000011878) ##26	TMEM183A (ENSCLAG00000013037)	ENSCLAG00000011787	CYB5R1 (ENSCLAG00000010011)	ADIPOR1 (ENSCLAG00000011742)	KLHL12 (ENSCLAG00000014551)	RABIF (ENSCLAG00000014300)	ENSCLAG00000013985	KDM5B (ENSCLAG00000014743)	SYT2 (ENSCLAG00000010287)	PPP1R12B (ENSCLAG00000014482)	UBE2T (ENSCLAG00000012486)	LGR6 (ENSCLAG00000013362)	ENSCLAG00000011824	PTPN7 (ENSCLAG00000012076)
Degu	MODERN SPECIES	50	ENSODEG00000013517	ENSODEG00000019942	SNRPE (ENSODEG00000013393)	ENSODEG00000012788	ZBED6 (ENSODEG00000019959)	ATP2B4 (ENSODEG00000013312)	ENSODEG00000020037	OPTC (ENSODEG00000011941)	PRELP (ENSODEG00000013597)	FMOD (ENSODEG00000012164)	BTG2 (ENSODEG00000012528)	CHIT1 (ENSODEG00000012946)	CHI3L1 (ENSODEG00000011673)	MYBPH (ENSODEG00000011869)	ADORA1 (ENSODEG00000012258)	MYOG (ENSODEG00000011506) ##22	PPFIA4 (ENSODEG00000011585) ##26	ENSODEG00000012180	ENSODEG00000012157	ENSODEG00000011458	ENSODEG00000019825	CYB5R1 (ENSODEG00000012060)	ADIPOR1 (ENSODEG00000011614)	ENSODEG00000014035	RABIF (ENSODEG00000012775)	ENSODEG00000012150	KDM5B (ENSODEG00000011605)	SYT2 (ENSODEG00000011128)	ENSODEG00000013339	ENSODEG00000020093	ENSODEG00000012820
Guinea pig	MODERN SPECIES	12	ETNK2 (ENSCPOG00000023063)	SOX13 (ENSCPOG00000006604)	ENSCPOG00000023757	ENSCPOG00000012421	ZBED6 (ENSCPOG00000036035)	LAX1 (ENSCPOG00000005721)	ATP2B4 (ENSCPOG00000005714)	OPTC (ENSCPOG00000009658)	PRELP (ENSCPOG00000031553)	FMOD (ENSCPOG00000034737)	BTG2 (ENSCPOG00000035133)	CHIT1 (ENSCPOG00000021800)	CHI3L1 (ENSCPOG00000005221)	MYBPH (ENSCPOG00000005216)	ADORA1 (ENSCPOG00000032582)	MYOG (ENSCPOG00000023459) ##22	PPFIA4 (ENSCPOG00000008983) ##26	TMEM183A (ENSCPOG00000027339)	ENSCPOG00000005380	CYB5R1 (ENSCPOG00000040552)	ADIPOR1 (ENSCPOG00000000482)	KLHL12 (ENSCPOG00000020314)	ENSCPOG00000023797	KDM5B (ENSCPOG00000010644)	SYT2 (ENSCPOG00000003309)	PPP1R12B (ENSCPOG00000000338)	UBE2T (ENSCPOG00000010279)	LGR6 (ENSCPOG00000035804)	PTPN7 (ENSCPOG00000003034)	ARL8A (ENSCPOG00000023243)	GPR37L1 (ENSCPOG00000031335)
Naked mole-rat female	MODERN SPECIES	16	SOX13 (ENSHGLG00000004023)	ENSHGLG00000004221	ENSHGLG00000005495	ZBED6 (ENSHGLG00000041611)	LAX1 (ENSHGLG00000048348)	ATP2B4 (ENSHGLG00000005394)	ENSHGLG00000003582	ENSHGLG00000050082	ENSHGLG00000003662	FMOD (ENSHGLG00000003978)	BTG2 (ENSHGLG00000034911)	CHIT1 (ENSHGLG00000004337)	CHI3L1 (ENSHGLG00000005828)	MYBPH (ENSHGLG00000007893)	ADORA1 (ENSHGLG00000004185)	MYOG (ENSHGLG00000004327) ##22	PPFIA4 (ENSHGLG00000005427) ##26	TMEM183A (ENSHGLG00000008174)	ENSHGLG00000040315	ENSHGLG00000047080	ENSHGLG00000008178	CYB5R1 (ENSHGLG00000008857)	ENSHGLG00000009199	KLHL12 (ENSHGLG00000010339)	RABIF (ENSHGLG00000011589)	ENSHGLG00000042202	ENSHGLG00000049280	KDM5B (ENSHGLG00000018432)	SYT2 (ENSHGLG00000016212)	ENSHGLG00000050689	ENSHGLG00000006122
Atlantogenata	ANCESTRAL SPECIES	18	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000163962	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939
Xenarthra	ANCESTRAL SPECIES	45													ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000164079	ENSGT00940000160979
Sloth	MODERN SPECIES	12676																MYOG (ENSCHOG00000009889) ##22
Armadillo	MODERN SPECIES	4356													CHI3L1 (ENSDNOG00000009518)	MYBPH (ENSDNOG00000015759)	ADORA1 (ENSDNOG00000037349)	MYOG (ENSDNOG00000032549) ##22	PPFIA4 (ENSDNOG00000017844) ##26	TMEM183A (ENSDNOG00000042915)	ENSDNOG00000045439	CYB5R1 (ENSDNOG00000008638)	ADIPOR1 (ENSDNOG00000042958)	KLHL12 (ENSDNOG00000010436)	ENSDNOG00000040354	ENSDNOG00000018314	ENSDNOG00000045214	KDM5B (ENSDNOG00000003205)	SYT2 (ENSDNOG00000042177)	PPP1R12B (ENSDNOG00000001035)	UBE2T (ENSDNOG00000047937)	ENSDNOG00000018475	ENSDNOG00000046615
Afrotheria	ANCESTRAL SPECIES	34	ENSGT00940000157898.e	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000163962	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079
Afrotheria_a	ANCESTRAL SPECIES	34	ENSGT00940000157898.e	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##26	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000163962	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079
Elephant	MODERN SPECIES	71	SOX13 (ENSLAFG00000015918)	SNRPE (ENSLAFG00000009349)	ENSLAFG00000010344	ENSLAFG00000031207	ZBED6 (ENSLAFG00000029775)	LAX1 (ENSLAFG00000010336)	ATP2B4 (ENSLAFG00000012442)	PRELP (ENSLAFG00000027913)	FMOD (ENSLAFG00000003588)	BTG2 (ENSLAFG00000031964)	CHIT1 (ENSLAFG00000017125)	CHI3L1 (ENSLAFG00000003983)	MYBPH (ENSLAFG00000001264)	ADORA1 (ENSLAFG00000001262)	ENSLAFG00000023356	MYOG (ENSLAFG00000013113) ##22	PPFIA4 (ENSLAFG00000018446) ##26	TMEM183A (ENSLAFG00000018443)	ENSLAFG00000030427	ENSLAFG00000026325	ENSLAFG00000030999	CYB5R1 (ENSLAFG00000003522)	ADIPOR1 (ENSLAFG00000003520)	KLHL12 (ENSLAFG00000003515)	RABIF (ENSLAFG00000031433)	ENSLAFG00000018012	KDM5B (ENSLAFG00000005104)	SYT2 (ENSLAFG00000018343)	PPP1R12B (ENSLAFG00000012724)	UBE2T (ENSLAFG00000015069)	LGR6 (ENSLAFG00000015055)
Hyrax	MODERN SPECIES	3265																MYOG (ENSPCAG00000006860) ##22	PPFIA4 (ENSPCAG00000006708) ##26
Tenrec	MODERN SPECIES	3953																MYOG (ENSETEG00000003043) ##22	ENSETEG00000003034 ##26
Platypus	MODERN SPECIES	18	TECR (ENSOANG00000003868)	NDUFB7 (ENSOANG00000050858)	ENSOANG00000049128	SNRPE (ENSOANG00000003101)	ENSOANG00000001915	ENSOANG00000041647	ATP2B4 (ENSOANG00000001912)	PRELP (ENSOANG00000045232)	FMOD (ENSOANG00000043665)	BTG2 (ENSOANG00000040119)	ENSOANG00000044868	CHIT1 (ENSOANG00000001909)	CHI3L1 (ENSOANG00000001907)	MYBPH (ENSOANG00000001906)	ADORA1 (ENSOANG00000043717)	MYOG (ENSOANG00000002107) ##22	PPFIA4 (ENSOANG00000039663) ##26	TMEM183A (ENSOANG00000002239)	ENSOANG00000009432	CYB5R1 (ENSOANG00000002686)	ADIPOR1 (ENSOANG00000010262)	KLHL12 (ENSOANG00000006287)	RABIF (ENSOANG00000006288)	ENSOANG00000028879	KDM5B (ENSOANG00000002512)	SYT2 (ENSOANG00000040777)	PPP1R12B (ENSOANG00000002514)	UBE2T (ENSOANG00000010964)	LGR6 (ENSOANG00000042275)	ENSOANG00000012568	PTPN7 (ENSOANG00000012567)
Anura	ANCESTRAL SPECIES	393															ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT00390000009310	ENSGT00940000170563
Frog	MODERN SPECIES	2	csde1 (ENSXETG00000021448)	ENSXETG00000021449	ampd1 (ENSXETG00000021450)	dennd2c (ENSXETG00000021454)	trim33 (ENSXETG00000021457)	ENSXETG00000042333	syt6 (ENSXETG00000001696)	olfml3 (ENSXETG00000001697)	hipk1 (ENSXETG00000001698)	ENSXETG00000041605	rab44 (ENSXETG00000041440)	cdkn1a (ENSXETG00000024887)	srsf3 (ENSXETG00000001701)	ENSXETG00000041500	adora1 (ENSXETG00000001702)	myog (ENSXETG00000001704) ##22	tmem183a (ENSXETG00000002408)	ENSXETG00000047138	ENSXETG00000034982	sirt2 (ENSXETG00000002409)	gpr161 (ENSXETG00000002410)	dpt (ENSXETG00000002411)	ENSXETG00000045586	atp1b1 (ENSXETG00000002414)	nme7 (ENSXETG00000002417)	blzf1 (ENSXETG00000002419)	ENSXETG00000039595	ENSXETG00000047446	slc19a2 (ENSXETG00000002422)	ENSXETG00000047971	f5 (ENSXETG00000002423)
Leishan spiny toad	MODERN SPECIES	5	ENSLLEG00000001223	KCNA2 (ENSLLEG00000001231)	ENSLLEG00000001243	KCNA10 (ENSLLEG00000001250)	NGF (ENSLLEG00000001266)	ENSLLEG00000001297	TSPAN2 (ENSLLEG00000001363)	ENSLLEG00000001374	ENSLLEG00000001383	ENSLLEG00000001394	TSHB (ENSLLEG00000001421)	ENSLLEG00000001433	SRSF3 (ENSLLEG00000001460)	ADORA1 (ENSLLEG00000001482)	ENSLLEG00000001492	MYOG (ENSLLEG00000001505) ##22	ENSLLEG00000001513	TMEM183A (ENSLLEG00000001528)	ENSLLEG00000001576	ENSLLEG00000001594	ENSLLEG00000001612	SIRT2 (ENSLLEG00000001627)	RSBN1 (ENSLLEG00000001647)	PHTF1 (ENSLLEG00000001666)	MAGI3 (ENSLLEG00000001760)	ENSLLEG00000002012	ENSLLEG00000002022	ENSLLEG00000002034	LRIG2 (ENSLLEG00000002045)	ENSLLEG00000002072	ENSLLEG00000002079
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	288			SOX6 (ENSLACG00000017676)	C11orf58 (ENSLACG00000017536)	PLEKHA7 (ENSLACG00000017451)	rps13 (ENSLACG00000017174)	PIK3C2A (ENSLACG00000017040)	rps13 (ENSLACG00000017012)	NUCB2 (ENSLACG00000016943)	ENSLACG00000016883	ENSLACG00000016827	KCNJ11 (ENSLACG00000016707)	ABCC8 (ENSLACG00000016365)	USH1C (ENSLACG00000016027)	OTOG (ENSLACG00000015455)	ENSLACG00000014612 ##22	zgc:172145 (ENSLACG00000014515)	MYOD1 (ENSLACG00000014430) ##22	KCNC1 (ENSLACG00000013857)	SERGEF (ENSLACG00000012618)	TPH1 (ENSLACG00000012424)	SAAL1 (ENSLACG00000011733)	HPS5 (ENSLACG00000011372)	GTF2H1 (ENSLACG00000011123)	LDHA (ENSLACG00000010504)	TSG101 (ENSLACG00000010221)	ENSLACG00000009769	SPTY2D1 (ENSLACG00000009475)	TMEM86A (ENSLACG00000008872)	IGSF22 (ENSLACG00000008077)	PTPN5 (ENSLACG00000007406)
Coelacanth	MODERN SPECIES	237	CDKN1A (ENSLACG00000008728)	ENSLACG00000009026	ENSLACG00000009583	ENSLACG00000009871	ENSLACG00000009938	cry3b (ENSLACG00000010538)	ENSLACG00000022539	LRIF1 (ENSLACG00000011605)	cry4 (ENSLACG00000012369)	DENND2D (ENSLACG00000012604)	DRAM2 (ENSLACG00000022493)	CEPT1 (ENSLACG00000013021)	MYBPH (ENSLACG00000013194)	ADORA1 (ENSLACG00000014019)	ENSLACG00000014521	MYOG (ENSLACG00000014874) ##22	PPFIA4 (ENSLACG00000014912) ##26	ENSLACG00000015407 #26	HIPK1 (ENSLACG00000015517)	AP4B1 (ENSLACG00000015784)	DCLRE1B (ENSLACG00000015870)	PTPN22 (ENSLACG00000016001)	RSBN1 (ENSLACG00000016161)	PHTF1 (ENSLACG00000016250)	MAGI3 (ENSLACG00000016389)	LRIG2 (ENSLACG00000016847)	SLC16A1 (ENSLACG00000016978)	ENSLACG00000017134	TAFA3 (ENSLACG00000017687)	PPM1J (ENSLACG00000017833)	ENSLACG00000017909
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00950000182959.a #22
Hagfish	MODERN SPECIES	821																ENSEBUG00000010500 #22