Euteleostomi	ANCESTRAL SPECIES	16	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00660000096975	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000167105	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00500000044938 #36
Sarcopterygii	ANCESTRAL SPECIES	8	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00660000096975	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00500000044938 #36	ENSGT00730000111039.C #37	ENSGT00940000157538	ENSGT00390000018272
Tetrapoda	ANCESTRAL SPECIES	5	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00660000096975	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000167105	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34
Amniota	ANCESTRAL SPECIES	5	ENSGT00390000002417 #8	ENSGT00960000190133	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Mammalia	ANCESTRAL SPECIES	8	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00960000190133	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Theria	ANCESTRAL SPECIES	2	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00960000190133	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Eutheria	ANCESTRAL SPECIES	1	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00960000190133	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Boreoeutheria	ANCESTRAL SPECIES	6	ENSGT00390000002417 #8	ENSGT00960000190133	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Euarchontoglires	ANCESTRAL SPECIES	6	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00960000192410	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00960000192410	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163898	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35
Glires	ANCESTRAL SPECIES	4	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00960000192410	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163898	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35
Rodentia	ANCESTRAL SPECIES	5	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00960000192410	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163898	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b #7	ENSGT00390000002417 #8	ENSGT00960000192410	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Hystricomorpha	ANCESTRAL SPECIES	9	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
Hystricomorpha_a	ANCESTRAL SPECIES	7	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
Hystricomorpha_b	ANCESTRAL SPECIES	13	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
Long-tailed chinchilla	MODERN SPECIES	112	ENSCLAG00000005333 #7	BBS10 (ENSCLAG00000007902) #8	OSBPL8 (ENSCLAG00000010204) #9	ENSCLAG00000017859 #10	ZDHHC17 (ENSCLAG00000011124) #11	CSRP2 (ENSCLAG00000008899) #12	E2F7 (ENSCLAG00000007164) #13	NAV3 (ENSCLAG00000012036) #14	ENSCLAG00000005685 #15	SYT1 (ENSCLAG00000004862) #16	PAWR (ENSCLAG00000008196) #17	PPP1R12A (ENSCLAG00000006399) #18	OTOGL (ENSCLAG00000006526) #19	PTPRQ (ENSCLAG00000012232) #20	MYF6 (ENSCLAG00000013875) #21	MYF5 (ENSCLAG00000014410) #22	ENSCLAG00000013764 #23	ACSS3 (ENSCLAG00000005808) #24	PPFIA2 (ENSCLAG00000008120) #25	CCDC59 (ENSCLAG00000015050) #26	METTL25 (ENSCLAG00000014989) #27	TMTC2 (ENSCLAG00000008519) #28	SLC6A15 (ENSCLAG00000009597) #29	LRRIQ1 (ENSCLAG00000007042) #30	ALX1 (ENSCLAG00000007151) #31	RASSF9 (ENSCLAG00000007610) #32	NTS (ENSCLAG00000007844) #33	MGAT4C (ENSCLAG00000008726) #34	C12orf50 (ENSCLAG00000006991) #35	C12orf29 (ENSCLAG00000004653) #36	CEP290 (ENSCLAG00000006047) #37
Degu	MODERN SPECIES	45	OSBPL8 (ENSODEG00000007618) #9	ENSODEG00000007367	ZDHHC17 (ENSODEG00000010670) #11	CSRP2 (ENSODEG00000008449) #12	ENSODEG00000008575 #13	NAV3 (ENSODEG00000010398) #14	ENSODEG00000007970	SYT1 (ENSODEG00000008387) #16	ENSODEG00000007440	PAWR (ENSODEG00000008160) #17	ENSODEG00000019636	PPP1R12A (ENSODEG00000009363) #18	OTOGL (ENSODEG00000007895) #19	PTPRQ (ENSODEG00000007761) #20	MYF6 (ENSODEG00000007305) #21	MYF5 (ENSODEG00000007510) #22	LIN7A (ENSODEG00000007832) #23	ENSODEG00000019454	ACSS3 (ENSODEG00000007503) #24	PPFIA2 (ENSODEG00000007419) #25	CCDC59 (ENSODEG00000009427) #26	METTL25 (ENSODEG00000010203) #27	TMTC2 (ENSODEG00000007730) #28	ENSODEG00000009267	ENSODEG00000009875	SLC6A15 (ENSODEG00000007508) #29	ENSODEG00000007801	ALX1 (ENSODEG00000008008) #31	RASSF9 (ENSODEG00000008024) #32	NTS (ENSODEG00000008426) #33	MGAT4C (ENSODEG00000011210) #34
Guinea pig	MODERN SPECIES	9	KRR1 (ENSCPOG00000014353)	PHLDA1 (ENSCPOG00000003245)	NAP1L1 (ENSCPOG00000019420) #7	BBS10 (ENSCPOG00000038158) #8	OSBPL8 (ENSCPOG00000001130) #9	ZDHHC17 (ENSCPOG00000012534) #11	CSRP2 (ENSCPOG00000031460) #12	E2F7 (ENSCPOG00000007375) #13	NAV3 (ENSCPOG00000015431) #14	SYT1 (ENSCPOG00000002054) #16	PAWR (ENSCPOG00000002469) #17	PPP1R12A (ENSCPOG00000004019) #18	OTOGL (ENSCPOG00000022231) #19	PTPRQ (ENSCPOG00000031105) #20	MYF6 (ENSCPOG00000030745) #21	MYF5 (ENSCPOG00000007766) #22	LIN7A (ENSCPOG00000001373) #23	ACSS3 (ENSCPOG00000003451) #24	PPFIA2 (ENSCPOG00000003459) #25	CCDC59 (ENSCPOG00000036718) #26	METTL25 (ENSCPOG00000011621) #27	TMTC2 (ENSCPOG00000005425) #28	SLC6A15 (ENSCPOG00000003103) #29	ENSCPOG00000022026	ALX1 (ENSCPOG00000027131) #31	ENSCPOG00000040399	RASSF9 (ENSCPOG00000030989) #32	NTS (ENSCPOG00000006576) #33	MGAT4C (ENSCPOG00000013992) #34	C12orf50 (ENSCPOG00000012468) #35	C12orf29 (ENSCPOG00000039127) #36
Naked mole-rat female	MODERN SPECIES	8	ENSHGLG00000044176	ENSHGLG00000004489	ENSHGLG00000009233 #11	ENSHGLG00000008206 #12	E2F7 (ENSHGLG00000006491) #13	NAV3 (ENSHGLG00000012083) #14	ENSHGLG00000010015	ENSHGLG00000042592	SYT1 (ENSHGLG00000047548) #16	PAWR (ENSHGLG00000017940) #17	ENSHGLG00000036431	PPP1R12A (ENSHGLG00000014201) #18	OTOGL (ENSHGLG00000013295) #19	PTPRQ (ENSHGLG00000011762) #20	MYF6 (ENSHGLG00000003419) #21	MYF5 (ENSHGLG00000003654) #22	ENSHGLG00000003757 #23	ACSS3 (ENSHGLG00000004579) #24	PPFIA2 (ENSHGLG00000000429) #25	ENSHGLG00000036317	CCDC59 (ENSHGLG00000001711) #26	METTL25 (ENSHGLG00000038393) #27	TMTC2 (ENSHGLG00000000320) #28	ENSHGLG00000018244	ENSHGLG00000000758	ENSHGLG00000000965 #29	LRRIQ1 (ENSHGLG00000000302) #30	ALX1 (ENSHGLG00000000937) #31	ENSHGLG00000036253	RASSF9 (ENSHGLG00000034316) #32	NTS (ENSHGLG00000001320) #33
Sciuridae	ANCESTRAL SPECIES	14	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b #7	ENSGT00390000002417 #8	ENSGT00960000192410	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Marmotini	ANCESTRAL SPECIES	4	ENSGT00390000018775.ab	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00390000009130.a.a.b.h	ENSGT00920000149095.b #35
Marmotini_b	ANCESTRAL SPECIES	3	ENSGT00390000018775.ab	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00390000009130.a.a.b.h	ENSGT00920000149095.b #35
Arctic ground squirrel	MODERN SPECIES	89														PTPRQ (ENSUPAG00010013494) #20	MYF6 (ENSUPAG00010013483) #21	MYF5 (ENSUPAG00010013472) #22	LIN7A (ENSUPAG00010013458) #23	ACSS3 (ENSUPAG00010013440) #24	PPFIA2 (ENSUPAG00010013381) #25	CCDC59 (ENSUPAG00010013356) #26	METTL25 (ENSUPAG00010013340) #27	TMTC2 (ENSUPAG00010013331) #28	ENSUPAG00010013316	SLC6A15 (ENSUPAG00010013281) #29	TSPAN19 (ENSUPAG00010013269)	ENSUPAG00010013204	ALX1 (ENSUPAG00010013178) #31	RASSF9 (ENSUPAG00010013163) #32	NTS (ENSUPAG00010013159) #33	MGAT4C (ENSUPAG00010013143) #34
Squirrel	MODERN SPECIES	298										SYT1 (ENSSTOG00000022817) #16	PAWR (ENSSTOG00000015765) #17	PPP1R12A (ENSSTOG00000011329) #18	OTOGL (ENSSTOG00000019523) #19	PTPRQ (ENSSTOG00000024058) #20	MYF6 (ENSSTOG00000015808) #21	MYF5 (ENSSTOG00000015810) #22	LIN7A (ENSSTOG00000015812) #23	ACSS3 (ENSSTOG00000013956) #24	PPFIA2 (ENSSTOG00000013971) #25
Alpin marmot	MODERN SPECIES	11	GLIPR1 (ENSMMMG00000002546)	KRR1 (ENSMMMG00000002493)	PHLDA1 (ENSMMMG00000002474)	ENSMMMG00000002289 #7	BBS10 (ENSMMMG00000002273) #8	OSBPL8 (ENSMMMG00000002240) #9	ZDHHC17 (ENSMMMG00000002185) #11	ENSMMMG00000002164 #12	E2F7 (ENSMMMG00000002119) #13	NAV3 (ENSMMMG00000002035) #14	SYT1 (ENSMMMG00000001991) #16	PPP1R12A (ENSMMMG00000001751) #18	OTOGL (ENSMMMG00000001599) #19	PTPRQ (ENSMMMG00000001485) #20	MYF6 (ENSMMMG00000001463) #21	MYF5 (ENSMMMG00000001446) #22	LIN7A (ENSMMMG00000001429) #23	ACSS3 (ENSMMMG00000001391) #24	PPFIA2 (ENSMMMG00000001244) #25	CCDC59 (ENSMMMG00000001213) #26	METTL25 (ENSMMMG00000001158) #27	TMTC2 (ENSMMMG00000001120) #28	ENSMMMG00000001090	SLC6A15 (ENSMMMG00000001050) #29	TSPAN19 (ENSMMMG00000001031)	LRRIQ1 (ENSMMMG00000000979) #30	ALX1 (ENSMMMG00000000949) #31	NTS (ENSMMMG00000000924) #33	MGAT4C (ENSMMMG00000000872) #34	ENSMMMG00000000843	ENSMMMG00000000830
Eurasian red squirrel	MODERN SPECIES	14	NAP1L1 (ENSSVLG00005023160) #7	BBS10 (ENSSVLG00005023257) #8	ENSSVLG00005023266	OSBPL8 (ENSSVLG00005023307) #9	ZDHHC17 (ENSSVLG00005023480) #11	ENSSVLG00005023521 #12	E2F7 (ENSSVLG00005023615) #13	ENSSVLG00005023728	NAV3 (ENSSVLG00005023837) #14	SYT1 (ENSSVLG00005024299) #16	PAWR (ENSSVLG00005024360) #17	PPP1R12A (ENSSVLG00005024407) #18	OTOGL (ENSSVLG00005024601) #19	PTPRQ (ENSSVLG00005025041) #20	MYF6 (ENSSVLG00005025222) #21	MYF5 (ENSSVLG00005025239) #22	LIN7A (ENSSVLG00005025250) #23	BLVRB (ENSSVLG00005025266)	ACSS3 (ENSSVLG00005000239) #24	PPFIA2 (ENSSVLG00005001201) #25	CCDC59 (ENSSVLG00005002316) #26	METTL25 (ENSSVLG00005002343) #27	TMTC2 (ENSSVLG00005002395) #28	SLC6A15 (ENSSVLG00005002476) #29	TSPAN19 (ENSSVLG00005002560)	LRRIQ1 (ENSSVLG00005002609) #30	ALX1 (ENSSVLG00005002747) #31	RASSF9 (ENSSVLG00005002780) #32	NTS (ENSSVLG00005002800) #33	MGAT4C (ENSSVLG00005002827) #34	ENSSVLG00005002860
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
Myomorpha	ANCESTRAL SPECIES	2	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163898	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Muroidea	ANCESTRAL SPECIES	5	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163898	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Muroidea_A	ANCESTRAL SPECIES	22	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
Cricetidae	ANCESTRAL SPECIES	21	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
Cricetinae	ANCESTRAL SPECIES	22	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
Chinese hamster chok1gshd	MODERN SPECIES	83	Osbpl8 (ENSCGRG00001021286) #9	Zdhhc17 (ENSCGRG00001007660) #11	Csrp2 (ENSCGRG00001000844) #12	E2f7 (ENSCGRG00001006568) #13	ENSCGRG00001011762	Nav3 (ENSCGRG00001022037) #14	Brcc3dc (ENSCGRG00001009076)	Syt1 (ENSCGRG00001000069) #16	ENSCGRG00001010398	ENSCGRG00001009057	Pawr (ENSCGRG00001011044) #17	Ppp1r12a (ENSCGRG00001017263) #18	Otogl (ENSCGRG00001018530) #19	Ptprq (ENSCGRG00001017128) #20	Myf6 (ENSCGRG00001006341) #21	Myf5 (ENSCGRG00001009370) #22	Lin7a (ENSCGRG00001003313) #23	Acss3 (ENSCGRG00001009906) #24	Ppfia2 (ENSCGRG00001020914) #25	ENSCGRG00001016413 #27	Syn3 (ENSCGRG00001000589)	Timp3 (ENSCGRG00001016875)	Fbxo7 (ENSCGRG00001019488)	Bpifc (ENSCGRG00001023438)	Rtcb (ENSCGRG00001011173)	Ascl4 (ENSCGRG00001008661)	ENSCGRG00001015102	Pwp1 (ENSCGRG00001019668)	Abtb3 (ENSCGRG00001021266)	Cry1 (ENSCGRG00001001431)	Mterf2 (ENSCGRG00001003171)
Golden Hamster	MODERN SPECIES	628	ENSMAUG00000021584	Nap1l1 (ENSMAUG00000016700) #7	Bbs10 (ENSMAUG00000018240) #8	Osbpl8 (ENSMAUG00000022092) #9	Zdhhc17 (ENSMAUG00000021687) #11	Csrp2 (ENSMAUG00000018727) #12	E2f7 (ENSMAUG00000010792) #13	Nav3 (ENSMAUG00000012505) #14	ENSMAUG00000014224	Syt1 (ENSMAUG00000012263) #16	ENSMAUG00000008984	Ppp1r12a (ENSMAUG00000021712) #18	Otogl (ENSMAUG00000009930) #19	Ptprq (ENSMAUG00000014282) #20	Myf6 (ENSMAUG00000019329) #21	Myf5 (ENSMAUG00000000933) #22	Lin7a (ENSMAUG00000007088) #23	Acss3 (ENSMAUG00000014131) #24	ENSMAUG00000019031	Ppfia2 (ENSMAUG00000021622) #25	Ccdc59 (ENSMAUG00000017516) #26	Mettl25 (ENSMAUG00000020950) #27	Tmtc2 (ENSMAUG00000015691) #28	Slc6a15 (ENSMAUG00000018360) #29	ENSMAUG00000001372	Alx1 (ENSMAUG00000015563) #31	Rassf9 (ENSMAUG00000012420) #32	Nts (ENSMAUG00000013146) #33	ENSMAUG00000004735 #34	ENSMAUG00000008756 #35	4930430F08Rik (ENSMAUG00000013438) #36
Cricetidae_B	ANCESTRAL SPECIES	29	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
Prairie vole	MODERN SPECIES	10	Phlda1 (ENSMOCG00000021889)	Nap1l1 (ENSMOCG00000012136) #7	Bbs10 (ENSMOCG00000020010) #8	Osbpl8 (ENSMOCG00000016633) #9	Zdhhc17 (ENSMOCG00000002407) #11	Csrp2 (ENSMOCG00000007217) #12	E2f7 (ENSMOCG00000021130) #13	Nav3 (ENSMOCG00000018391) #14	ENSMOCG00000020523	Syt1 (ENSMOCG00000012503) #16	Pawr (ENSMOCG00000019570) #17	Ppp1r12a (ENSMOCG00000018418) #18	Otogl (ENSMOCG00000018409) #19	Ptprq (ENSMOCG00000017842) #20	Myf6 (ENSMOCG00000015833) #21	Myf5 (ENSMOCG00000017847) #22	Lin7a (ENSMOCG00000021369) #23	Acss3 (ENSMOCG00000012086) #24	Ppfia2 (ENSMOCG00000007873) #25	Ccdc59 (ENSMOCG00000006690) #26	Mettl25 (ENSMOCG00000018000) #27	Tmtc2 (ENSMOCG00000012479) #28	ENSMOCG00000016887	ENSMOCG00000010194	Slc6a15 (ENSMOCG00000002838) #29	ENSMOCG00000019991	Alx1 (ENSMOCG00000007046) #31	Rassf9 (ENSMOCG00000010972) #32	Nts (ENSMOCG00000000690) #33	Mgat4c (ENSMOCG00000012409) #34	1700017N19Rik (ENSMOCG00000017688) #35
Northern American deer mouse	MODERN SPECIES	9	Phlda1 (ENSPEMG00000020277)	Nap1l1 (ENSPEMG00000000646) #7	Bbs10 (ENSPEMG00000031116) #8	Osbpl8 (ENSPEMG00000008934) #9	Zdhhc17 (ENSPEMG00000011257) #11	Csrp2 (ENSPEMG00000012653) #12	E2f7 (ENSPEMG00000013555) #13	Nav3 (ENSPEMG00000003783) #14	Brcc3dc (ENSPEMG00000012864)	Syt1 (ENSPEMG00000011853) #16	Pawr (ENSPEMG00000031267) #17	Ppp1r12a (ENSPEMG00000011824) #18	Otogl (ENSPEMG00000005921) #19	Ptprq (ENSPEMG00000019976) #20	Myf6 (ENSPEMG00000019751) #21	Myf5 (ENSPEMG00000018818) #22	Lin7a (ENSPEMG00000018576) #23	Acss3 (ENSPEMG00000017696) #24	Ppfia2 (ENSPEMG00000015993) #25	Ccdc59 (ENSPEMG00000031144) #26	Mettl25 (ENSPEMG00000013112) #27	Tmtc2 (ENSPEMG00000020725) #28	Mgat4c (ENSPEMG00000019377) #34	Nts (ENSPEMG00000024525) #33	Rassf9 (ENSPEMG00000012691) #32	Alx1 (ENSPEMG00000011110) #31	Lrriq1 (ENSPEMG00000012353) #30	Slc6a15 (ENSPEMG00000010154) #29	1700017N19Rik (ENSPEMG00000010447) #35	4930430F08Rik (ENSPEMG00000016254) #36	Cep290 (ENSPEMG00000008348) #37
Murinae	ANCESTRAL SPECIES	22	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163898	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Mus	ANCESTRAL SPECIES	23	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
Mus_A	ANCESTRAL SPECIES	11	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
Mus_B	ANCESTRAL SPECIES	10	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
Mouse	MODERN SPECIES	1	Phlda1 (ENSMUSG00000020205)	Nap1l1 (ENSMUSG00000058799) #7	Bbs10 (ENSMUSG00000035759) #8	Osbpl8 (ENSMUSG00000020189) #9	Zdhhc17 (ENSMUSG00000035798) #11	Csrp2 (ENSMUSG00000020186) #12	E2f7 (ENSMUSG00000020185) #13	Nav3 (ENSMUSG00000020181) #14	Brcc3dc (ENSMUSG00000112039)	Syt1 (ENSMUSG00000035864) #16	Pawr (ENSMUSG00000035873) #17	Ppp1r12a (ENSMUSG00000019907) #18	Otogl (ENSMUSG00000091455) #19	Ptprq (ENSMUSG00000035916) #20	Myf6 (ENSMUSG00000035923) #21	Myf5 (ENSMUSG00000000435) #22	Lin7a (ENSMUSG00000019906) #23	Acss3 (ENSMUSG00000035948) #24	Ppfia2 (ENSMUSG00000053825) #25	Ccdc59 (ENSMUSG00000019897) #26	Mettl25 (ENSMUSG00000036009) #27	Tmtc2 (ENSMUSG00000036019) #28	Gm4340 (ENSMUSG00000090854)	Gm20765 (ENSMUSG00000095022)	Gm21312 (ENSMUSG00000094144)	Gm21304 (ENSMUSG00000097550)	Gm8764 (ENSMUSG00000097878)	Gm6763 (ENSMUSG00000097427)	Gm21293 (ENSMUSG00000091779)	Slc6a15 (ENSMUSG00000019894) #29	Lrriq1 (ENSMUSG00000019892) #30
Mus_C	ANCESTRAL SPECIES	7	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
spretus	MODERN SPECIES	1	Krr1 (MGP_SPRETEiJ_G0016622)	Phlda1 (MGP_SPRETEiJ_G0016621)	Nap1l1 (MGP_SPRETEiJ_G0016620) #7	Bbs10 (MGP_SPRETEiJ_G0016619) #8	Osbpl8 (MGP_SPRETEiJ_G0016618) #9	Zdhhc17 (MGP_SPRETEiJ_G0016617) #11	Csrp2 (MGP_SPRETEiJ_G0016616) #12	E2f7 (MGP_SPRETEiJ_G0016615) #13	Nav3 (MGP_SPRETEiJ_G0016614) #14	Syt1 (MGP_SPRETEiJ_G0016613) #16	Pawr (MGP_SPRETEiJ_G0016612) #17	Ppp1r12a (MGP_SPRETEiJ_G0016611) #18	Otogl (MGP_SPRETEiJ_G0016610) #19	Ptprq (MGP_SPRETEiJ_G0016609) #20	Myf6 (MGP_SPRETEiJ_G0016608) #21	Myf5 (MGP_SPRETEiJ_G0016607) #22	Lin7a (MGP_SPRETEiJ_G0016606) #23	Acss3 (MGP_SPRETEiJ_G0016605) #24	Ppfia2 (MGP_SPRETEiJ_G0016604) #25	Ccdc59 (MGP_SPRETEiJ_G0016603) #26	Mettl25 (MGP_SPRETEiJ_G0016602) #27	Tmtc2 (MGP_SPRETEiJ_G0016601) #28	Slc6a15 (MGP_SPRETEiJ_G0016600) #29	MGP_SPRETEiJ_G0016599 #30	Alx1 (MGP_SPRETEiJ_G0016598) #31	Rassf9 (MGP_SPRETEiJ_G0016597) #32	Nts (MGP_SPRETEiJ_G0016596) #33	Mgat4c (MGP_SPRETEiJ_G0016595) #34	1700017N19Rik (MGP_SPRETEiJ_G0016594) #35	4930430F08Rik (MGP_SPRETEiJ_G0016593) #36	Cep290 (MGP_SPRETEiJ_G0016592) #37
Steppe mouse	MODERN SPECIES	3222							Nav3 (ENSMSIG00000028730) #14	Syt1 (ENSMSIG00000028850) #16	Pawr (ENSMSIG00000028867) #17	Ppp1r12a (ENSMSIG00000028882) #18	ENSMSIG00000029031	ENSMSIG00000029033	Otogl (ENSMSIG00000029034) #19	Ptprq (ENSMSIG00000029070) #20	Myf6 (ENSMSIG00000029104) #21	Myf5 (ENSMSIG00000029106) #22
Ryukyu mouse	MODERN SPECIES	1	Krr1 (MGP_CAROLIEiJ_G0015800)	Phlda1 (MGP_CAROLIEiJ_G0015799)	Nap1l1 (MGP_CAROLIEiJ_G0015798) #7	Bbs10 (MGP_CAROLIEiJ_G0015797) #8	Osbpl8 (MGP_CAROLIEiJ_G0015796) #9	Zdhhc17 (MGP_CAROLIEiJ_G0015795) #11	Csrp2 (MGP_CAROLIEiJ_G0015794) #12	E2f7 (MGP_CAROLIEiJ_G0015793) #13	Nav3 (MGP_CAROLIEiJ_G0015792) #14	Syt1 (MGP_CAROLIEiJ_G0015791) #16	MGP_CAROLIEiJ_G0015790 #17	Ppp1r12a (MGP_CAROLIEiJ_G0015789) #18	Otogl (MGP_CAROLIEiJ_G0015788) #19	Ptprq (MGP_CAROLIEiJ_G0015787) #20	Myf6 (MGP_CAROLIEiJ_G0015786) #21	Myf5 (MGP_CAROLIEiJ_G0015785) #22	Lin7a (MGP_CAROLIEiJ_G0015784) #23	Acss3 (MGP_CAROLIEiJ_G0015783) #24	Ppfia2 (MGP_CAROLIEiJ_G0015782) #25	Ccdc59 (MGP_CAROLIEiJ_G0015781) #26	Mettl25 (MGP_CAROLIEiJ_G0015780) #27	Tmtc2 (MGP_CAROLIEiJ_G0015779) #28	Slc6a15 (MGP_CAROLIEiJ_G0015778) #29	MGP_CAROLIEiJ_G0015777 #30	Alx1 (MGP_CAROLIEiJ_G0015776) #31	Rassf9 (MGP_CAROLIEiJ_G0015775) #32	Nts (MGP_CAROLIEiJ_G0015774) #33	Mgat4c (MGP_CAROLIEiJ_G0015773) #34	1700017N19Rik (MGP_CAROLIEiJ_G0015772) #35	4930430F08Rik (MGP_CAROLIEiJ_G0015771) #36	Cep290 (MGP_CAROLIEiJ_G0015770) #37
Shrew mouse	MODERN SPECIES	22	Krr1 (MGP_PahariEiJ_G0031287)	Phlda1 (MGP_PahariEiJ_G0031288)	MGP_PahariEiJ_G0031289 #7	Bbs10 (MGP_PahariEiJ_G0031290) #8	Osbpl8 (MGP_PahariEiJ_G0031291) #9	Zdhhc17 (MGP_PahariEiJ_G0031292) #11	Csrp2 (MGP_PahariEiJ_G0031293) #12	E2f7 (MGP_PahariEiJ_G0031294) #13	MGP_PahariEiJ_G0031295 #14	Syt1 (MGP_PahariEiJ_G0031296) #16	Pawr (MGP_PahariEiJ_G0031297) #17	Ppp1r12a (MGP_PahariEiJ_G0031298) #18	MGP_PahariEiJ_G0031299 #19	Ptprq (MGP_PahariEiJ_G0031300) #20	Myf6 (MGP_PahariEiJ_G0031301) #21	Myf5 (MGP_PahariEiJ_G0031302) #22	Lin7a (MGP_PahariEiJ_G0031303) #23	Acss3 (MGP_PahariEiJ_G0031304) #24	Ppfia2 (MGP_PahariEiJ_G0031305) #25	Ccdc59 (MGP_PahariEiJ_G0031306) #26	Mettl25 (MGP_PahariEiJ_G0031307) #27	Tmtc2 (MGP_PahariEiJ_G0031308) #28	Slc6a15 (MGP_PahariEiJ_G0031309) #29	MGP_PahariEiJ_G0031310 #30	Alx1 (MGP_PahariEiJ_G0031311) #31	Rassf9 (MGP_PahariEiJ_G0031312) #32	Nts (MGP_PahariEiJ_G0031313) #33	Mgat4c (MGP_PahariEiJ_G0031314) #34	1700017N19Rik (MGP_PahariEiJ_G0031315) #35	4930430F08Rik (MGP_PahariEiJ_G0031316) #36	Cep290 (MGP_PahariEiJ_G0031317) #37
Rat	MODERN SPECIES	17	Nap1l1 (ENSRNOG00000003890) #7	Bbs10 (ENSRNOG00000026913) #8	ENSRNOG00000062798	Osbpl8 (ENSRNOG00000026962) #9	Zdhhc17 (ENSRNOG00000003803) #11	Csrp2 (ENSRNOG00000003772) #12	E2f7 (ENSRNOG00000026252) #13	Nav3 (ENSRNOG00000052157) #14	Brcc3dc (ENSRNOG00000070196)	Syt1 (ENSRNOG00000006426) #16	Pawr (ENSRNOG00000005917) #17	Ppp1r12a (ENSRNOG00000004925) #18	Otogl (ENSRNOG00000030316) #19	Ptprq (ENSRNOG00000056915) #20	Myf6 (ENSRNOG00000004878) #21	Myf5 (ENSRNOG00000004768) #22	Lin7a (ENSRNOG00000004527) #23	Acss3 (ENSRNOG00000004448) #24	Ppfia2 (ENSRNOG00000004353) #25	ENSRNOG00000063471	Ccdc59 (ENSRNOG00000004183) #26	Mettl25 (ENSRNOG00000027451) #27	Tmtc2 (ENSRNOG00000004585) #28	Slc6a15 (ENSRNOG00000027468) #29	Lrriq1 (ENSRNOG00000004564)	Alx1 (ENSRNOG00000004390) #31	Rassf9 (ENSRNOG00000038574) #32	Nts (ENSRNOG00000004179) #33	Mgat4c (ENSRNOG00000004149) #34	AABR07056845.1 (ENSRNOG00000023762)	LOC500827 (ENSRNOG00000051928) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	494	ENSNGAG00000014133	Bbs10 (ENSNGAG00000022298) #8	Osbpl8 (ENSNGAG00000014231) #9	Zdhhc17 (ENSNGAG00000009049) #11	ENSNGAG00000023257 #12	E2f7 (ENSNGAG00000023644) #13	ENSNGAG00000024182	Nav3 (ENSNGAG00000024210) #14	Syt1 (ENSNGAG00000020988) #16	Pawr (ENSNGAG00000015922) #17	Ppp1r12a (ENSNGAG00000023300) #18	ENSNGAG00000024231	Otogl (ENSNGAG00000022483) #19	Ptprq (ENSNGAG00000024172) #20	Myf6 (ENSNGAG00000023390) #21	Myf5 (ENSNGAG00000003539) #22	Lin7a (ENSNGAG00000022827) #23	Acss3 (ENSNGAG00000015078) #24	Ppfia2 (ENSNGAG00000022807) #25	ENSNGAG00000012599	Ccdc59 (ENSNGAG00000023637) #26	Mettl25 (ENSNGAG00000016246) #27	Tmtc2 (ENSNGAG00000023652) #28
Lesser Egyptian jerboa	MODERN SPECIES	42	Bbs10 (ENSJJAG00000023405) #8	Osbpl8 (ENSJJAG00000024252) #9	ENSJJAG00000011419 #11	ENSJJAG00000014135 #12	ENSJJAG00000005723	E2f7 (ENSJJAG00000007878) #13	ENSJJAG00000010552	Nav3 (ENSJJAG00000012332) #14	ENSJJAG00000022372	Syt1 (ENSJJAG00000023399) #16	Pawr (ENSJJAG00000018666) #17	Ppp1r12a (ENSJJAG00000023796) #18	Otogl (ENSJJAG00000019493) #19	Ptprq (ENSJJAG00000017741) #20	Myf6 (ENSJJAG00000011250) #21	Myf5 (ENSJJAG00000003407) #22	Lin7a (ENSJJAG00000023503) #23	Acss3 (ENSJJAG00000008308) #24	Ppfia2 (ENSJJAG00000006298) #25	ENSJJAG00000003779	Ccdc59 (ENSJJAG00000015263) #26	Mettl25 (ENSJJAG00000023860) #27	Tmtc2 (ENSJJAG00000016641) #28	Slc6a15 (ENSJJAG00000006373) #29	Alx1 (ENSJJAG00000006817) #31	ENSJJAG00000002806	Rassf9 (ENSJJAG00000013251) #32	Nts (ENSJJAG00000014653) #33	Mgat4c (ENSJJAG00000021989) #34	1700017N19Rik (ENSJJAG00000023823) #35	4930430F08Rik (ENSJJAG00000013569) #36
Kangaroo rat	MODERN SPECIES	322	ENSDORG00000023399	Phlda1 (ENSDORG00000027757)	Nap1l1 (ENSDORG00000029138) #7	Bbs10 (ENSDORG00000000668) #8	Osbpl8 (ENSDORG00000000670) #9	Zdhhc17 (ENSDORG00000012435) #11	Csrp2 (ENSDORG00000012441) #12	ENSDORG00000026154 #13	Nav3 (ENSDORG00000011080) #14	Syt1 (ENSDORG00000003724) #16	Pawr (ENSDORG00000029489) #17	Ppp1r12a (ENSDORG00000007157) #18	Otogl (ENSDORG00000028677) #19	Ptprq (ENSDORG00000023208) #20	Myf6 (ENSDORG00000015435) #21	Myf5 (ENSDORG00000015437) #22	Lin7a (ENSDORG00000014355) #23	Acss3 (ENSDORG00000007288) #24	Ppfia2 (ENSDORG00000007289) #25	Mettl25 (ENSDORG00000003006) #27	Tmtc2 (ENSDORG00000005875) #28	Slc6a15 (ENSDORG00000000388) #29	ENSDORG00000008703	ENSDORG00000011012	Alx1 (ENSDORG00000011021) #31	Rassf9 (ENSDORG00000029782) #32	Nts (ENSDORG00000016284) #33	Mgat4c (ENSDORG00000025545) #34	1700017N19Rik (ENSDORG00000015892) #35	4930430F08Rik (ENSDORG00000015893) #36	Cep290 (ENSDORG00000015894) #37
Lagomorpha	ANCESTRAL SPECIES	113	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34
Rabbit	MODERN SPECIES	15	ENSOCUG00000028124	ZDHHC17 (ENSOCUG00000010401) #11	ENSOCUG00000027238	ENSOCUG00000008330 #12	E2F7 (ENSOCUG00000004932) #13	ENSOCUG00000025947	NAV3 (ENSOCUG00000004936) #14	ENSOCUG00000005148	SYT1 (ENSOCUG00000014829) #16	PAWR (ENSOCUG00000013722) #17	PPP1R12A (ENSOCUG00000016701) #18	ENSOCUG00000037584	OTOGL (ENSOCUG00000014963) #19	PTPRQ (ENSOCUG00000011455) #20	MYF6 (ENSOCUG00000001457) #21	MYF5 (ENSOCUG00000025477) #22	LIN7A (ENSOCUG00000004203) #23	ACSS3 (ENSOCUG00000015752) #24	PPFIA2 (ENSOCUG00000015770) #25	ENSOCUG00000036764	CCDC59 (ENSOCUG00000017824) #26	METTL25 (ENSOCUG00000017825) #27	TMTC2 (ENSOCUG00000017847) #28	SLC6A15 (ENSOCUG00000014066) #29	TSPAN19 (ENSOCUG00000037319)	ENSOCUG00000034706	LRRIQ1 (ENSOCUG00000017527) #30	ALX1 (ENSOCUG00000009125) #31	ENSOCUG00000036577	RASSF9 (ENSOCUG00000017872) #32	NTS (ENSOCUG00000010336) #33
Pika	MODERN SPECIES	1627														ENSOPRG00000008989 #20	MYF6 (ENSOPRG00000008999) #21	MYF5 (ENSOPRG00000009007) #22	LIN7A (ENSOPRG00000009017) #23
Tree shrew	MODERN SPECIES	370															MYF6 (ENSTBEG00000007822) #21	MYF5 (ENSTBEG00000008363) #22
Primates	ANCESTRAL SPECIES	6	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00960000192410	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Haplorrhini	ANCESTRAL SPECIES	3	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00960000192410	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Simiiformes	ANCESTRAL SPECIES	4	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00960000192410	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Catarrhini	ANCESTRAL SPECIES	4	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00960000192410	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Hominoidea	ANCESTRAL SPECIES	5	ENSGT00940000153362.a #7	ENSGT00880000138028.b.b.b	ENSGT00390000002417 #8	ENSGT00960000192410	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546.c #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Hominidae	ANCESTRAL SPECIES	4	ENSGT00940000153362.a #7	ENSGT00880000138028.b.b.b	ENSGT00390000002417 #8	ENSGT00960000192410	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546.c #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	5	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00880000138028.b.b.b	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546.c #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.a.b	ENSGT00920000149095.b #35
Gorilla	MODERN SPECIES	3	ZDHHC17 (ENSGGOG00000023287) #11	ENSGGOG00000039704 #12	ENSGGOG00000041578 #12	ENSGGOG00000038839	E2F7 (ENSGGOG00000012645) #13	NAV3 (ENSGGOG00000006574) #14	ENSGGOG00000002908	SYT1 (ENSGGOG00000024224) #16	ENSGGOG00000022534	PAWR (ENSGGOG00000010093) #17	PPP1R12A (ENSGGOG00000014574) #18	ENSGGOG00000025286	ENSGGOG00000015088 #19	PTPRQ (ENSGGOG00000011494) #20	MYF6 (ENSGGOG00000004369) #21	MYF5 (ENSGGOG00000004366) #22	LIN7A (ENSGGOG00000038053) #23	ACSS3 (ENSGGOG00000010105) #24	PPFIA2 (ENSGGOG00000026460) #25	CCDC59 (ENSGGOG00000025296) #26	METTL25 (ENSGGOG00000023239) #27	TMTC2 (ENSGGOG00000028180) #28	ENSGGOG00000025311	SLC6A15 (ENSGGOG00000010440) #29	TSPAN19 (ENSGGOG00000022316)	LRRIQ1 (ENSGGOG00000010081) #30	ALX1 (ENSGGOG00000000168) #31	RASSF9 (ENSGGOG00000028426) #32	NTS (ENSGGOG00000010239) #33	MGAT4C (ENSGGOG00000015293) #34	ENSGGOG00000025144
Homo/Pan group	ANCESTRAL SPECIES	6	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00880000138028.b.b.b	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546.c #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.a.b	ENSGT00920000149095.b #35
Pan	ANCESTRAL SPECIES	4	ENSGT00940000156622 #9	ENSGT00950000182922.a.a.a.b.a.b.a.b.b.a	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000154389.b.e	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546.c #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.a.b	ENSGT00920000149095.b #35
Chimpanzee	MODERN SPECIES	3	ZDHHC17 (ENSPTRG00000005243) #11	CSRP2 (ENSPTRG00000005244) #12	ENSPTRG00000051009	E2F7 (ENSPTRG00000005245) #13	NAV3 (ENSPTRG00000005247) #14	ENSPTRG00000046920	ENSPTRG00000044151	ENSPTRG00000050322	SYT1 (ENSPTRG00000024064) #16	PAWR (ENSPTRG00000005250) #17	PPP1R12A (ENSPTRG00000005252) #18	ENSPTRG00000045837	OTOGL (ENSPTRG00000005257) #19	PTPRQ (ENSPTRG00000039205) #20	MYF6 (ENSPTRG00000005260) #21	MYF5 (ENSPTRG00000005261) #22	LIN7A (ENSPTRG00000005262) #23	ACSS3 (ENSPTRG00000005263) #24	PPFIA2 (ENSPTRG00000005265) #25	CCDC59 (ENSPTRG00000005266) #26	METTL25 (ENSPTRG00000005267) #27	TMTC2 (ENSPTRG00000005268) #28	SLC6A15 (ENSPTRG00000005269) #29	TSPAN19 (ENSPTRG00000040421)	LRRIQ1 (ENSPTRG00000005271) #30	ALX1 (ENSPTRG00000005272) #31	RASSF9 (ENSPTRG00000005273) #32	NTS (ENSPTRG00000005274) #33	MGAT4C (ENSPTRG00000045901) #34	ENSPTRG00000044899	C12H12orf50 (ENSPTRG00000005276) #35
Bonobo	MODERN SPECIES	3	OSBPL8 (ENSPPAG00000043423) #9	ENSPPAG00000040481	ZDHHC17 (ENSPPAG00000030097) #11	ENSPPAG00000042089 #12	ENSPPAG00000042681	E2F7 (ENSPPAG00000002532) #13	NAV3 (ENSPPAG00000036134) #14	ENSPPAG00000015674	ENSPPAG00000028521	SYT1 (ENSPPAG00000029261) #16	PAWR (ENSPPAG00000043711) #17	PPP1R12A (ENSPPAG00000030740) #18	OTOGL (ENSPPAG00000014085) #19	PTPRQ (ENSPPAG00000000830) #20	MYF6 (ENSPPAG00000032290) #21	MYF5 (ENSPPAG00000028699) #22	LIN7A (ENSPPAG00000026771) #23	ACSS3 (ENSPPAG00000040977) #24	PPFIA2 (ENSPPAG00000033118) #25	CCDC59 (ENSPPAG00000030113) #26	METTL25 (ENSPPAG00000028130) #27	TMTC2 (ENSPPAG00000043706) #28	SLC6A15 (ENSPPAG00000043054) #29	TSPAN19 (ENSPPAG00000042222)	LRRIQ1 (ENSPPAG00000029539) #30	ALX1 (ENSPPAG00000034056) #31	RASSF9 (ENSPPAG00000019366) #32	NTS (ENSPPAG00000032540) #33	MGAT4C (ENSPPAG00000031798) #34	ENSPPAG00000020965	ENSPPAG00000043288
Human	MODERN SPECIES	3	KRR1 (ENSG00000111615)	PHLDA1 (ENSG00000139289)	NAP1L1 (ENSG00000187109) #7	BBS10 (ENSG00000179941) #8	OSBPL8 (ENSG00000091039) #9	ZDHHC17 (ENSG00000186908) #11	CSRP2 (ENSG00000175183) #12	E2F7 (ENSG00000165891) #13	NAV3 (ENSG00000067798) #14	SYT1 (ENSG00000067715) #16	PAWR (ENSG00000177425) #17	PPP1R12A (ENSG00000058272) #18	OTOGL (ENSG00000165899) #19	PTPRQ (ENSG00000139304) #20	MYF6 (ENSG00000111046) #21	MYF5 (ENSG00000111049) #22	LIN7A (ENSG00000111052) #23	ACSS3 (ENSG00000111058) #24	PPFIA2 (ENSG00000139220) #25	CCDC59 (ENSG00000133773) #26	METTL25 (ENSG00000127720) #27	TMTC2 (ENSG00000179104) #28	SLC6A15 (ENSG00000072041) #29	TSPAN19 (ENSG00000231738)	LRRIQ1 (ENSG00000133640) #30	ALX1 (ENSG00000180318) #31	RASSF9 (ENSG00000198774) #32	NTS (ENSG00000133636) #33	MGAT4C (ENSG00000182050) #34	C12orf50 (ENSG00000165805) #35	C12orf29 (ENSG00000133641) #36
Orangutan	MODERN SPECIES	3	BBS10 (ENSPPYG00000004787) #8	ENSPPYG00000037353	OSBPL8 (ENSPPYG00000004788) #9	ZDHHC17 (ENSPPYG00000004789) #11	ENSPPYG00000031243 #12	E2F7 (ENSPPYG00000004791) #13	NAV3 (ENSPPYG00000004792) #14	ENSPPYG00000004793	SYT1 (ENSPPYG00000004794) #16	PAWR (ENSPPYG00000004795) #17	ENSPPYG00000025853	PPP1R12A (ENSPPYG00000004796) #18	OTOGL (ENSPPYG00000004797) #19	PTPRQ (ENSPPYG00000041069) #20	MYF6 (ENSPPYG00000004799) #21	MYF5 (ENSPPYG00000004800) #22	LIN7A (ENSPPYG00000039262) #23	ACSS3 (ENSPPYG00000004802) #24	PPFIA2 (ENSPPYG00000004803) #25	CCDC59 (ENSPPYG00000004804) #26	METTL25 (ENSPPYG00000004805) #27	TMTC2 (ENSPPYG00000004806) #28	SLC6A15 (ENSPPYG00000004807) #29	TSPAN19 (ENSPPYG00000038266)	LRRIQ1 (ENSPPYG00000004808) #30	RASSF9 (ENSPPYG00000033145) #32	NTS (ENSPPYG00000004810) #33	MGAT4C (ENSPPYG00000004811) #34	C12orf50 (ENSPPYG00000004812) #35	C12H12orf29 (ENSPPYG00000004813) #36	CEP290 (ENSPPYG00000004814) #37
Gibbon	MODERN SPECIES		NAP1L1 (ENSNLEG00000004682) #7	ENSNLEG00000031630	BBS10 (ENSNLEG00000004748) #8	OSBPL8 (ENSNLEG00000004750) #9	ZDHHC17 (ENSNLEG00000004841) #11	ENSNLEG00000004885 #12	ENSNLEG00000028737	E2F7 (ENSNLEG00000004897) #13	NAV3 (ENSNLEG00000004917) #14	SYT1 (ENSNLEG00000004995) #16	PAWR (ENSNLEG00000005035) #17	PPP1R12A (ENSNLEG00000005041) #18	OTOGL (ENSNLEG00000005115) #19	PTPRQ (ENSNLEG00000005154) #20	MYF6 (ENSNLEG00000032583) #21	MYF5 (ENSNLEG00000005207) #22	LIN7A (ENSNLEG00000032491) #23	ACSS3 (ENSNLEG00000005227) #24	PPFIA2 (ENSNLEG00000005251) #25	CCDC59 (ENSNLEG00000033968) #26	METTL25 (ENSNLEG00000005299) #27	TMTC2 (ENSNLEG00000005311) #28	SLC6A15 (ENSNLEG00000005336) #29	LRRIQ1 (ENSNLEG00000005358) #30	ALX1 (ENSNLEG00000005381) #31	RASSF9 (ENSNLEG00000005386) #32	NTS (ENSNLEG00000005388) #33	MGAT4C (ENSNLEG00000005393) #34	C12orf50 (ENSNLEG00000005395) #35	C12orf29 (ENSNLEG00000005396) #36	CEP290 (ENSNLEG00000005417) #37
Cercopithecidae	ANCESTRAL SPECIES	3	ENSGT00390000002417 #8	ENSGT00960000192410	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Cercopithecinae	ANCESTRAL SPECIES	7	ENSGT00390000002417 #8	ENSGT00960000192410	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Vervet Monkey	MODERN SPECIES	2	NAP1L1 (ENSCSAG00000004030) #7	BBS10 (ENSCSAG00000004028) #8	OSBPL8 (ENSCSAG00000004024) #9	ZDHHC17 (ENSCSAG00000004014) #11	CSRP2 (ENSCSAG00000004009) #12	E2F7 (ENSCSAG00000003998) #13	ENSCSAG00000003979 #14	ENSCSAG00000018912	ENSCSAG00000018914	SYT1 (ENSCSAG00000003971) #16	PAWR (ENSCSAG00000003962) #17	PPP1R12A (ENSCSAG00000003956) #18	OTOGL (ENSCSAG00000003939) #19	PTPRQ (ENSCSAG00000003913) #20	MYF6 (ENSCSAG00000003893) #21	MYF5 (ENSCSAG00000003889) #22	LIN7A (ENSCSAG00000003887) #23	ACSS3 (ENSCSAG00000003882) #24	PPFIA2 (ENSCSAG00000003876) #25	ENSCSAG00000003868 #25	CCDC59 (ENSCSAG00000003867) #26	METTL25 (ENSCSAG00000003863) #27	ENSCSAG00000018917	TMTC2 (ENSCSAG00000003860) #28	ENSCSAG00000018919	ENSCSAG00000018921	ENSCSAG00000018923	SLC6A15 (ENSCSAG00000003858) #29	TSPAN19 (ENSCSAG00000003855)	LRRIQ1 (ENSCSAG00000003850) #30	ALX1 (ENSCSAG00000003845) #31
Cercopithecinae_a	ANCESTRAL SPECIES	7	ENSGT00940000156622 #9	ENSGT01050000244986.b.b.d.a.a.b	ENSGT00390000009168.hb	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00940000153524.b.a.a.k.a	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00950000182767.b.b.d.hb.b.a.b.a.a.b.b
Macaca	ANCESTRAL SPECIES	6	ENSGT00940000156622 #9	ENSGT01050000244986.b.b.d.a.a.b	ENSGT00390000009168.hb	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00950000183030.m.a.a.b.b.a.b.a	ENSGT00910000147454	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00940000153524.b.a.a.k.a	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00950000182767.b.b.d.hb.b.a.b.a.a.b.b
Pig-tailed macaque	MODERN SPECIES	517	E2F7 (ENSMNEG00000025875) #13	NAV3 (ENSMNEG00000043424) #14	ENSMNEG00000000985	ENSMNEG00000009689	ENSMNEG00000026858	ENSMNEG00000028899	ENSMNEG00000037055	ENSMNEG00000038165	ENSMNEG00000031657	SYT1 (ENSMNEG00000030551) #16	PAWR (ENSMNEG00000004020) #17	PPP1R12A (ENSMNEG00000033679) #18	OTOGL (ENSMNEG00000034772) #19	PTPRQ (ENSMNEG00000045562) #20	MYF6 (ENSMNEG00000019739) #21	MYF5 (ENSMNEG00000039510) #22	LIN7A (ENSMNEG00000040769) #23	ACSS3 (ENSMNEG00000030423) #24	ENSMNEG00000021297	PPFIA2 (ENSMNEG00000041825) #25	CCDC59 (ENSMNEG00000037462) #26	METTL25 (ENSMNEG00000042500) #27	TMTC2 (ENSMNEG00000028808) #28	ENSMNEG00000032829	SLC6A15 (ENSMNEG00000005563) #29	TSPAN19 (ENSMNEG00000036225)	LRRIQ1 (ENSMNEG00000037379) #30	ALX1 (ENSMNEG00000034993) #31	ENSMNEG00000000984	RASSF9 (ENSMNEG00000033486) #32	NTS (ENSMNEG00000040065) #33
Macaca_a	ANCESTRAL SPECIES	6	ENSGT01030000234542.b.a.a.a.b.a.a.a.b.a.a	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT01050000245239.a.a	ENSGT00940000161627.a.a.a.a.b.a.a.a.b.c.a.a.a.b	ENSGT00940000158014 #14	ENSGT00950000183030.m.a.a.b.b.a.b.a	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.b.a.a.b.a.b.c.b	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000153052.c.b.a.a.a.a.b.b.b	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00950000182767.b.b.d.hb.b.a.b.a.a.b.b
Crab-eating macaque	MODERN SPECIES	2	NAV3 (ENSMFAG00000044289) #14	ENSMFAG00000034925	ENSMFAG00000034379	ENSMFAG00000000157	SYT1 (ENSMFAG00000003495) #16	ENSMFAG00000050054	PAWR (ENSMFAG00000062333) #17	ENSMFAG00000063729	ENSMFAG00000049694	PPP1R12A (ENSMFAG00000034239) #18	OTOGL (ENSMFAG00000031786) #19	PTPRQ (ENSMFAG00000044210) #20	ENSMFAG00000052094	ENSMFAG00000058049	MYF6 (ENSMFAG00000033881) #21	MYF5 (ENSMFAG00000042044) #22	LIN7A (ENSMFAG00000040160) #23	ENSMFAG00000031214	ACSS3 (ENSMFAG00000040344) #24	PPFIA2 (ENSMFAG00000031204) #25	ENSMFAG00000049838	CCDC59 (ENSMFAG00000034303) #26	METTL25 (ENSMFAG00000036420) #27	ENSMFAG00000051090	ENSMFAG00000052001	TMTC2 (ENSMFAG00000038030) #28	ENSMFAG00000053756	ENSMFAG00000051138	ENSMFAG00000060580	ENSMFAG00000047713	ENSMFAG00000047900
Rhesus	MODERN SPECIES	2	E2F7 (ENSMMUG00000022846) #13	ENSMMUG00000059985	ENSMMUG00000055171	ENSMMUG00000060140	NAV3 (ENSMMUG00000021329) #14	ENSMMUG00000058640	ENSMMUG00000051304	ENSMMUG00000060137	SYT1 (ENSMMUG00000005530) #16	PAWR (ENSMMUG00000015179) #17	ENSMMUG00000053591	PPP1R12A (ENSMMUG00000019214) #18	OTOGL (ENSMMUG00000000121) #19	PTPRQ (ENSMMUG00000037711) #20	MYF6 (ENSMMUG00000011667) #21	MYF5 (ENSMMUG00000011669) #22	LIN7A (ENSMMUG00000011671) #23	ENSMMUG00000017463	ACSS3 (ENSMMUG00000013800) #24	ENSMMUG00000046323	PPFIA2 (ENSMMUG00000013804) #25	ENSMMUG00000050266	CCDC59 (ENSMMUG00000063005) #26	METTL25 (ENSMMUG00000002514) #27	ENSMMUG00000059068	TMTC2 (ENSMMUG00000011305) #28	ENSMMUG00000043159	ENSMMUG00000058294	SLC6A15 (ENSMMUG00000013650) #29	TSPAN19 (ENSMMUG00000042255)	LRRIQ1 (ENSMMUG00000016535) #30
Cercopithecinae_b	ANCESTRAL SPECIES	2	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00390000009168.hb	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000014818.g.b.a.a.a.b.b	ENSGT00940000153294.m.b.s.f	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00940000153524.b.a.a.k.a	ENSGT00950000182839.A.c #32
Olive baboon	MODERN SPECIES	19	ZDHHC17 (ENSPANG00000004050) #11	CSRP2 (ENSPANG00000023047) #12	E2F7 (ENSPANG00000004929) #13	NAV3 (ENSPANG00000007911) #14	ENSPANG00000043139	ENSPANG00000015985	ENSPANG00000040020	SYT1 (ENSPANG00000009048) #16	PAWR (ENSPANG00000009557) #17	PPP1R12A (ENSPANG00000026354) #18	ENSPANG00000047805	OTOGL (ENSPANG00000012907) #19	PTPRQ (ENSPANG00000014456) #20	ENSPANG00000005319	MYF6 (ENSPANG00000044306) #21	MYF5 (ENSPANG00000020394) #22	LIN7A (ENSPANG00000005931) #23	ACSS3 (ENSPANG00000019084) #24	PPFIA2 (ENSPANG00000019704) #25	ENSPANG00000035488	ENSPANG00000042647	ENSPANG00000049322	CCDC59 (ENSPANG00000023011) #26	METTL25 (ENSPANG00000033969) #27	ENSPANG00000032275	TMTC2 (ENSPANG00000008622) #28	ENSPANG00000049628	ENSPANG00000005733	SLC6A15 (ENSPANG00000011238) #29	LRRIQ1 (ENSPANG00000020393) #30	TSPAN19 (ENSPANG00000016556)
Cercopithecinae_d	ANCESTRAL SPECIES	3	ENSGT00390000009168.hb	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000163914.c.a	ENSGT00390000003133.i.a	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000014818.g.b.a.a.a.b.a	ENSGT00940000153294.m.b.s.f	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00940000153524.b.a.a.k.a	ENSGT00950000182839.A.c #32
Sooty mangabey	MODERN SPECIES	582	ENSCATG00000039522	ENSCATG00000044128	ZDHHC17 (ENSCATG00000040479) #11	CSRP2 (ENSCATG00000040566) #12	E2F7 (ENSCATG00000035481) #13	NAV3 (ENSCATG00000032040) #14	ENSCATG00000017337	ENSCATG00000040529	ENSCATG00000044466	SYT1 (ENSCATG00000033541) #16	PAWR (ENSCATG00000034935) #17	PPP1R12A (ENSCATG00000038278) #18	OTOGL (ENSCATG00000038125) #19	PTPRQ (ENSCATG00000039610) #20	MYF6 (ENSCATG00000029151) #21	MYF5 (ENSCATG00000042162) #22	LIN7A (ENSCATG00000029939) #23	ACSS3 (ENSCATG00000030914) #24	PPFIA2 (ENSCATG00000040747) #25	ENSCATG00000038856	ENSCATG00000031323	ENSCATG00000034351	CCDC59 (ENSCATG00000044760) #26	METTL25 (ENSCATG00000044852) #27	TMTC2 (ENSCATG00000040764) #28	ENSCATG00000022828	SLC6A15 (ENSCATG00000041025) #29	TSPAN19 (ENSCATG00000034141)	LRRIQ1 (ENSCATG00000037866) #30	ALX1 (ENSCATG00000041762) #31	ENSCATG00000038524
Drill	MODERN SPECIES	1141													OTOGL (ENSMLEG00000040646) #19	PTPRQ (ENSMLEG00000039303) #20	MYF6 (ENSMLEG00000034432) #21	MYF5 (ENSMLEG00000038211) #22	LIN7A (ENSMLEG00000020249) #23	ACSS3 (ENSMLEG00000042153) #24	ENSMLEG00000000975	PPFIA2 (ENSMLEG00000042213) #25
Rhinopithecus	ANCESTRAL SPECIES	603													ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25
Golden snub-nosed monkey	MODERN SPECIES	2447													OTOGL (ENSRROG00000003053) #19	PTPRQ (ENSRROG00000040104) #20	MYF6 (ENSRROG00000040631) #21	MYF5 (ENSRROG00000040728) #22	LIN7A (ENSRROG00000035008) #23	ACSS3 (ENSRROG00000030884) #24	PPFIA2 (ENSRROG00000012213) #25
Black snub-nosed monkey	MODERN SPECIES	485														PTPRQ (ENSRBIG00000036416) #20	MYF6 (ENSRBIG00000034023) #21	MYF5 (ENSRBIG00000011474) #22
Platyrrhini	ANCESTRAL SPECIES	6	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.u.a.a #12	ENSGT00940000154980.u.a.b #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00910000148286	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00390000014620.j	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35
Cebidae	ANCESTRAL SPECIES	2	ENSGT00910000147072.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.u.a.a #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00390000014620.j	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35
Cebidae_a	ANCESTRAL SPECIES	8	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.u.a.a #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00550000074807.d	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00390000008708.o.a	ENSGT00940000157277 #29	ENSGT00390000014620.j	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34
Capuchin	MODERN SPECIES	156										PAWR (ENSCCAG00000026556) #17	PPP1R12A (ENSCCAG00000027422) #18	ENSCCAG00000033086	OTOGL (ENSCCAG00000019837) #19	PTPRQ (ENSCCAG00000033930) #20	MYF6 (ENSCCAG00000032873) #21	MYF5 (ENSCCAG00000029028) #22	LIN7A (ENSCCAG00000033374) #23	ACSS3 (ENSCCAG00000035103) #24	PPFIA2 (ENSCCAG00000029694) #25	CCDC59 (ENSCCAG00000021997) #26	METTL25 (ENSCCAG00000032764) #27	ENSCCAG00000034003	TMTC2 (ENSCCAG00000037661) #28	ENSCCAG00000032890
Bolivian squirrel monkey	MODERN SPECIES	67	BBS10 (ENSSBOG00000022169) #8	OSBPL8 (ENSSBOG00000030671) #9	ZDHHC17 (ENSSBOG00000036173) #11	ENSSBOG00000014459 #12	E2F7 (ENSSBOG00000028674) #13	NAV3 (ENSSBOG00000036099) #14	ENSSBOG00000036163	ENSSBOG00000025849	SYT1 (ENSSBOG00000033271) #16	PAWR (ENSSBOG00000025731) #17	PPP1R12A (ENSSBOG00000033660) #18	ENSSBOG00000026289	OTOGL (ENSSBOG00000033681) #19	PTPRQ (ENSSBOG00000027538) #20	MYF6 (ENSSBOG00000021822) #21	MYF5 (ENSSBOG00000019536) #22	LIN7A (ENSSBOG00000030034) #23	ENSSBOG00000034028	ENSSBOG00000022040	ACSS3 (ENSSBOG00000018710) #24	PPFIA2 (ENSSBOG00000021244) #25	CCDC59 (ENSSBOG00000029711) #26	METTL25 (ENSSBOG00000025680) #27	ENSSBOG00000025592	TMTC2 (ENSSBOG00000024696) #28	ENSSBOG00000032046	ENSSBOG00000035574	SLC6A15 (ENSSBOG00000036273) #29	TSPAN19 (ENSSBOG00000018936)	LRRIQ1 (ENSSBOG00000024808) #30	ALX1 (ENSSBOG00000028789) #31
Marmoset	MODERN SPECIES	21	ENSCJAG00000078161	BBS10 (ENSCJAG00000001113) #8	OSBPL8 (ENSCJAG00000001055) #9	ZDHHC17 (ENSCJAG00000019075) #11	ENSCJAG00000019153 #12	E2F7 (ENSCJAG00000019162) #13	NAV3 (ENSCJAG00000019176) #14	ENSCJAG00000078124	ENSCJAG00000078194	SYT1 (ENSCJAG00000019262) #16	PAWR (ENSCJAG00000019265) #17	PPP1R12A (ENSCJAG00000019271) #18	OTOGL (ENSCJAG00000019323) #19	PTPRQ (ENSCJAG00000019332) #20	MYF6 (ENSCJAG00000081789) #21	MYF5 (ENSCJAG00000019340) #22	LIN7A (ENSCJAG00000019343) #23	ACSS3 (ENSCJAG00000019352) #24	PPFIA2 (ENSCJAG00000019370) #25	CCDC59 (ENSCJAG00000019396) #26	METTL25 (ENSCJAG00000019400) #27	TMTC2 (ENSCJAG00000019420) #28	ENSCJAG00000073753	ENSCJAG00000081141	ENSCJAG00000086215	SLC6A15 (ENSCJAG00000019425) #29	TSPAN19 (ENSCJAG00000039345)	LRRIQ1 (ENSCJAG00000019445) #30	ALX1 (ENSCJAG00000080722) #31	ENSCJAG00000085601	EEA1 (ENSCJAG00000019460)
Mas night monkey	MODERN SPECIES	833	ENSANAG00000028981	ENSANAG00000021237 #12	E2F7 (ENSANAG00000036545) #13	ENSANAG00000032226	NAV3 (ENSANAG00000037686) #14	ENSANAG00000023582	ENSANAG00000023157	SYT1 (ENSANAG00000025826) #16	PAWR (ENSANAG00000022396) #17	PPP1R12A (ENSANAG00000034824) #18	ENSANAG00000019658	ENSANAG00000036662	OTOGL (ENSANAG00000024695) #19	PTPRQ (ENSANAG00000035871) #20	MYF6 (ENSANAG00000024892) #21	MYF5 (ENSANAG00000023208) #22	LIN7A (ENSANAG00000032889) #23	ACSS3 (ENSANAG00000034361) #24	PPFIA2 (ENSANAG00000023020) #25	CCDC59 (ENSANAG00000033505) #26	METTL25 (ENSANAG00000035794) #27	TMTC2 (ENSANAG00000036537) #28	ENSANAG00000022029	SLC6A15 (ENSANAG00000025270) #29	ENSANAG00000032039	TSPAN19 (ENSANAG00000013117)	LRRIQ1 (ENSANAG00000027300) #30	ALX1 (ENSANAG00000031059) #31	RASSF9 (ENSANAG00000030253) #32	NTS (ENSANAG00000030448) #33	MGAT4C (ENSANAG00000037245) #34
Tarsier	MODERN SPECIES	4455												OTOGL (ENSTSYG00000036620) #19	ENSTSYG00000026335	PTPRQ (ENSTSYG00000027505) #20	MYF6 (ENSTSYG00000003275) #21	MYF5 (ENSTSYG00000003282) #22	ENSTSYG00000010879 #23
Strepsirrhini	ANCESTRAL SPECIES	3	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394.b #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Lemuriformes	ANCESTRAL SPECIES	1	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394.b #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Lemuriformes_a	ANCESTRAL SPECIES	190										ENSGT00940000155394.b #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34
Coquerels sifaka	MODERN SPECIES	654	SAT1 (ENSPCOG00000022263)	ACOT9 (ENSPCOG00000017631)	PRDX4 (ENSPCOG00000021645)	PTCHD1 (ENSPCOG00000010244)	PHEX (ENSPCOG00000025455)	ENSPCOG00000017400	MBTPS2 (ENSPCOG00000008143)	SMPX (ENSPCOG00000025800)	CNKSR2 (ENSPCOG00000014884)	SYT1 (ENSPCOG00000025512) #16	PAWR (ENSPCOG00000018957) #17	PPP1R12A (ENSPCOG00000018987) #18	OTOGL (ENSPCOG00000027646) #19	PTPRQ (ENSPCOG00000012150) #20	MYF6 (ENSPCOG00000021756) #21	MYF5 (ENSPCOG00000012709) #22
Greater bamboo lemur	MODERN SPECIES	95						PANK3 (ENSPSMG00000017197)	ENSPSMG00000017175	CPEB4 (ENSPSMG00000017067)	ENSPSMG00000016953	SYT1 (ENSPSMG00000016943) #16	PAWR (ENSPSMG00000016915) #17	PPP1R12A (ENSPSMG00000016837) #18	OTOGL (ENSPSMG00000016582) #19	PTPRQ (ENSPSMG00000016269) #20	MYF6 (ENSPSMG00000016092) #21	MYF5 (ENSPSMG00000016083) #22	LIN7A (ENSPSMG00000016071) #23	ACSS3 (ENSPSMG00000016037) #24	PPFIA2 (ENSPSMG00000015931) #25	CCDC59 (ENSPSMG00000015532) #26	METTL25 (ENSPSMG00000015523) #27	TMTC2 (ENSPSMG00000015469) #28	SLC6A15 (ENSPSMG00000015347) #29	TSPAN19 (ENSPSMG00000015246)	LRRIQ1 (ENSPSMG00000015231) #30
Mouse lemur	MODERN SPECIES	29	BBS10 (ENSMICG00000042947) #8	OSBPL8 (ENSMICG00000000969) #9	ENSMICG00000029525	ZDHHC17 (ENSMICG00000033453) #11	CSRP2 (ENSMICG00000047076) #12	ENSMICG00000014368	E2F7 (ENSMICG00000013872) #13	NAV3 (ENSMICG00000003403) #14	SYT1 (ENSMICG00000015517) #16	PAWR (ENSMICG00000031649) #17	ENSMICG00000032513	PPP1R12A (ENSMICG00000032335) #18	OTOGL (ENSMICG00000026871) #19	PTPRQ (ENSMICG00000038737) #20	MYF6 (ENSMICG00000004274) #21	MYF5 (ENSMICG00000036139) #22	LIN7A (ENSMICG00000033894) #23	ACSS3 (ENSMICG00000010809) #24	PPFIA2 (ENSMICG00000010822) #25	CCDC59 (ENSMICG00000041747) #26	METTL25 (ENSMICG00000027175) #27	TMTC2 (ENSMICG00000031682) #28	SLC6A15 (ENSMICG00000026324) #29	TSPAN19 (ENSMICG00000038361)	LRRIQ1 (ENSMICG00000037929) #30	ALX1 (ENSMICG00000032710) #31	RASSF9 (ENSMICG00000042014) #32	NTS (ENSMICG00000037863) #33	MGAT4C (ENSMICG00000037297) #34	ENSMICG00000034439	ENSMICG00000035359
Bushbaby	MODERN SPECIES	122	PHLDA1 (ENSOGAG00000010317)	NAP1L1 (ENSOGAG00000010319) #7	BBS10 (ENSOGAG00000025855) #8	OSBPL8 (ENSOGAG00000017084) #9	ZDHHC17 (ENSOGAG00000013994) #11	CSRP2 (ENSOGAG00000013999) #12	E2F7 (ENSOGAG00000010821) #13	ENSOGAG00000030290	NAV3 (ENSOGAG00000010604) #14	SYT1 (ENSOGAG00000009943) #16	PAWR (ENSOGAG00000027944) #17	PPP1R12A (ENSOGAG00000010740) #18	OTOGL (ENSOGAG00000030466) #19	PTPRQ (ENSOGAG00000025362) #20	MYF6 (ENSOGAG00000001038) #21	MYF5 (ENSOGAG00000001039) #22	LIN7A (ENSOGAG00000004616) #23	ACSS3 (ENSOGAG00000014813) #24	PPFIA2 (ENSOGAG00000014823) #25	ENSOGAG00000025088	CCDC59 (ENSOGAG00000004383) #26	METTL25 (ENSOGAG00000004384) #27	TMTC2 (ENSOGAG00000000477) #28	SLC6A15 (ENSOGAG00000014207) #29	LRRIQ1 (ENSOGAG00000014209) #30	ALX1 (ENSOGAG00000014211) #31	RASSF9 (ENSOGAG00000003208) #32	NTS (ENSOGAG00000003210) #33	MGAT4C (ENSOGAG00000003212) #34	ENSOGAG00000032440	ENSOGAG00000034474
Laurasiatheria	ANCESTRAL SPECIES	6	ENSGT00390000002417 #8	ENSGT00960000190133	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35
Eulipotyphla	ANCESTRAL SPECIES	1068															ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22
Hedgehog	MODERN SPECIES	13857																MYF5 (ENSEEUG00000011612) #22
Common shrew	MODERN SPECIES	12722															MYF6 (ENSSARG00000008211) #21	MYF5 (ENSSARG00000008217) #22
Laurasiatheria_a	ANCESTRAL SPECIES	6	ENSGT00390000002417 #8	ENSGT00960000190133	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Artiodactyla	ANCESTRAL SPECIES	6	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Suina	ANCESTRAL SPECIES	4	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Pig	MODERN SPECIES	13	ENSSSCG00000025041	ZDHHC17 (ENSSSCG00000000952) #11	CSRP2 (ENSSSCG00000000951) #12	ENSSSCG00000043521	E2F7 (ENSSSCG00000000950) #13	ENSSSCG00000044299	NAV3 (ENSSSCG00000029249) #14	ENSSSCG00000052129	ENSSSCG00000049637	SYT1 (ENSSSCG00000000948) #16	PAWR (ENSSSCG00000036560) #17	PPP1R12A (ENSSSCG00000038973) #18	OTOGL (ENSSSCG00000000943) #19	PTPRQ (ENSSSCG00000031716) #20	MYF6 (ENSSSCG00000026533) #21	MYF5 (ENSSSCG00000000937) #22	ENSSSCG00000042719	LIN7A (ENSSSCG00000040348) #23	ACSS3 (ENSSSCG00000000939) #24	PPFIA2 (ENSSSCG00000000940) #25	CCDC59 (ENSSSCG00000038987) #26	METTL25 (ENSSSCG00000000941) #27	TMTC2 (ENSSSCG00000024065) #28	ENSSSCG00000042278	SLC6A15 (ENSSSCG00000000936) #29	TSPAN19 (ENSSSCG00000040399)	LRRIQ1 (ENSSSCG00000000934) #30	ALX1 (ENSSSCG00000036744) #31	RASSF9 (ENSSSCG00000034948) #32	NTS (ENSSSCG00000000932) #33	MGAT4C (ENSSSCG00000032321) #34
Chacoan peccary	MODERN SPECIES	871	ENSCWAG00000005880	PHLDA1 (ENSCWAG00000005900)	NAP1L1 (ENSCWAG00000005937) #7	BBS10 (ENSCWAG00000006105) #8	OSBPL8 (ENSCWAG00000006143) #9	ZDHHC17 (ENSCWAG00000006304) #11	CSRP2 (ENSCWAG00000006361) #12	E2F7 (ENSCWAG00000006403) #13	NAV3 (ENSCWAG00000006671) #14	SYT1 (ENSCWAG00000007382) #16	PAWR (ENSCWAG00000007454) #17	PPP1R12A (ENSCWAG00000007564) #18	OTOGL (ENSCWAG00000007720) #19	PTPRQ (ENSCWAG00000009402) #20	MYF6 (ENSCWAG00000010168) #21	MYF5 (ENSCWAG00000010199) #22	LIN7A (ENSCWAG00000010238) #23	ACSS3 (ENSCWAG00000010300) #24	PPFIA2 (ENSCWAG00000010523) #25	CCDC59 (ENSCWAG00000013098) #26	METTL25 (ENSCWAG00000013127) #27	TMTC2 (ENSCWAG00000013168) #28
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Artiodactyla_b	ANCESTRAL SPECIES	5	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Cetacea	ANCESTRAL SPECIES	8	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000154172.ab.b	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Odontoceti	ANCESTRAL SPECIES	7	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000154172.ab.b	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Sperm whale	MODERN SPECIES	17	ENSPCTG00005009623	ENSPCTG00005009647	BBS10 (ENSPCTG00005009666) #8	OSBPL8 (ENSPCTG00005009709) #9	ZDHHC17 (ENSPCTG00005009874) #11	CSRP2 (ENSPCTG00005009938) #12	E2F7 (ENSPCTG00005009995) #13	NAV3 (ENSPCTG00005010415) #14	SYT1 (ENSPCTG00005012311) #16	PAWR (ENSPCTG00005012474) #17	PPP1R12A (ENSPCTG00005012575) #18	ENSPCTG00005012953	OTOGL (ENSPCTG00005013033) #19	PTPRQ (ENSPCTG00005015293) #20	MYF6 (ENSPCTG00005016374) #21	MYF5 (ENSPCTG00005016429) #22	LIN7A (ENSPCTG00005016469) #23	ACSS3 (ENSPCTG00005016578) #24	PPFIA2 (ENSPCTG00005017124) #25	CCDC59 (ENSPCTG00005020122) #26	METTL25 (ENSPCTG00005020146) #27	ENSPCTG00005020220	TMTC2 (ENSPCTG00005020242) #28	SLC6A15 (ENSPCTG00005020350) #29	TSPAN19 (ENSPCTG00005020436)	LRRIQ1 (ENSPCTG00005020500) #30	ALX1 (ENSPCTG00005020630) #31	RASSF9 (ENSPCTG00005020645) #32	NTS (ENSPCTG00005020672) #33	MGAT4C (ENSPCTG00005020711) #34	C12orf50 (ENSPCTG00005020740) #35
Odontoceti_a	ANCESTRAL SPECIES	6	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000154172.ab.b	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Dolphin	MODERN SPECIES	622														ENSTTRG00000014683 #20	MYF6 (ENSTTRG00000014689) #21	MYF5 (ENSTTRG00000014691) #22	LIN7A (ENSTTRG00000014693) #23	ACSS3 (ENSTTRG00000014696) #24	PPFIA2 (ENSTTRG00000014699) #25
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000154172.ab.b	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00390000004735.A.n	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.bb.a #12	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000154172.ab.b	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00390000004735.A.n	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35
Beluga whale	MODERN SPECIES	39	OSBPL8 (ENSDLEG00000007401) #9	ENSDLEG00000007371	ZDHHC17 (ENSDLEG00000007362) #11	CSRP2 (ENSDLEG00000007353) #12	ENSDLEG00000007329 #13	ENSDLEG00000007322 #13	NAV3 (ENSDLEG00000006608) #14	SYT1 (ENSDLEG00000006456) #16	ENSDLEG00000006452	PAWR (ENSDLEG00000006445) #17	ENSDLEG00000006442	PPP1R12A (ENSDLEG00000006433) #18	OTOGL (ENSDLEG00000006234) #19	PTPRQ (ENSDLEG00000006066) #20	MYF6 (ENSDLEG00000006023) #21	MYF5 (ENSDLEG00000006018) #22	LIN7A (ENSDLEG00000005973) #23	ACSS3 (ENSDLEG00000005911) #24	PPFIA2 (ENSDLEG00000005438) #25
Narwhal	MODERN SPECIES	313	BBS10 (ENSMMNG00015017120) #8	OSBPL8 (ENSMMNG00015017163) #9	ZDHHC17 (ENSMMNG00015017285) #11	ENSMMNG00015017474	CSRP2 (ENSMMNG00015017494) #12	E2F7 (ENSMMNG00015017553) #13	NAV3 (ENSMMNG00015017728) #14	SYT1 (ENSMMNG00015017994) #16	PAWR (ENSMMNG00015018035) #17	ENSMMNG00015018085	PPP1R12A (ENSMMNG00015018194) #18	ENSMMNG00015018420	OTOGL (ENSMMNG00015018567) #19	PTPRQ (ENSMMNG00015019359) #20	MYF6 (ENSMMNG00015019715) #21	MYF5 (ENSMMNG00015019736) #22	LIN7A (ENSMMNG00015019774) #23	ENSMMNG00015019830	ACSS3 (ENSMMNG00015019853) #24	PPFIA2 (ENSMMNG00015020218) #25	CCDC59 (ENSMMNG00015020720) #26	METTL25 (ENSMMNG00015020747) #27	TMTC2 (ENSMMNG00015020798) #28	FAM50A (ENSMMNG00015020820)	SLC6A15 (ENSMMNG00015020847) #29	TSPAN19 (ENSMMNG00015020883)	LRRIQ1 (ENSMMNG00015020965) #30	ALX1 (ENSMMNG00015020997) #31	RASSF9 (ENSMMNG00015021023) #32	NTS (ENSMMNG00015021038) #33	MGAT4C (ENSMMNG00015021064) #34
Vaquita	MODERN SPECIES	1	OSBPL8 (ENSPSNG00000010975) #9	ENSPSNG00000010941	ENSPSNG00000010920	ZDHHC17 (ENSPSNG00000010872) #11	CSRP2 (ENSPSNG00000010823) #12	E2F7 (ENSPSNG00000010547) #13	NAV3 (ENSPSNG00000009074) #14	ENSPSNG00000008562	SYT1 (ENSPSNG00000008513) #16	PAWR (ENSPSNG00000008439) #17	ENSPSNG00000008403	PPP1R12A (ENSPSNG00000008207) #18	OTOGL (ENSPSNG00000007188) #19	PTPRQ (ENSPSNG00000006652) #20	MYF6 (ENSPSNG00000006531) #21	MYF5 (ENSPSNG00000006510) #22	LIN7A (ENSPSNG00000006484) #23	ACSS3 (ENSPSNG00000006403) #24	PPFIA2 (ENSPSNG00000005685) #25	ENSPSNG00000005450 #26	METTL25 (ENSPSNG00000005420) #27	FAM50A (ENSPSNG00000005402)	TMTC2 (ENSPSNG00000005299) #28	ENSPSNG00000005260	SLC6A15 (ENSPSNG00000005229) #29	TSPAN19 (ENSPSNG00000005188)	LRRIQ1 (ENSPSNG00000005070) #30	ALX1 (ENSPSNG00000005010) #31	RASSF9 (ENSPSNG00000004990) #32	NTS (ENSPSNG00000004962) #33	MGAT4C (ENSPSNG00000004935) #34
Blue whale	MODERN SPECIES	1	NAP1L1 (ENSBMSG00010020766) #7	BBS10 (ENSBMSG00010020864) #8	OSBPL8 (ENSBMSG00010020883) #9	ZDHHC17 (ENSBMSG00010020913) #11	CSRP2 (ENSBMSG00010020929) #12	E2F7 (ENSBMSG00010020948) #13	NAV3 (ENSBMSG00010021020) #14	ENSBMSG00010021165	SYT1 (ENSBMSG00010021177) #16	PAWR (ENSBMSG00010021183) #17	PPP1R12A (ENSBMSG00010021198) #18	ENSBMSG00010021208	OTOGL (ENSBMSG00010021255) #19	PTPRQ (ENSBMSG00010007468) #20	MYF6 (ENSBMSG00010007564) #21	MYF5 (ENSBMSG00010007571) #22	LIN7A (ENSBMSG00010007592) #23	ENSBMSG00010007609	ACSS3 (ENSBMSG00010007621) #24	PPFIA2 (ENSBMSG00010007808) #25	CCDC59 (ENSBMSG00010008631) #26	METTL25 (ENSBMSG00010008637) #27	ENSBMSG00010008650	TMTC2 (ENSBMSG00010008658) #28	ENSBMSG00010008664	SLC6A15 (ENSBMSG00010008679) #29	TSPAN19 (ENSBMSG00010008692)	LRRIQ1 (ENSBMSG00010008720) #30	ALX1 (ENSBMSG00010008770) #31	ENSBMSG00010008780	RASSF9 (ENSBMSG00010008783) #32
Pecora	ANCESTRAL SPECIES	3	ENSGT00940000153362.a.cb #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Percora_a	ANCESTRAL SPECIES	3	ENSGT00940000153362.a.cb #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Bovidae	ANCESTRAL SPECIES	3	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00390000012446.o.b	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000013187.b	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35
Caprinae	ANCESTRAL SPECIES		ENSGT00440000039564.b	ENSGT00940000153362.a.cb.b #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a.n #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000013187.b	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35
Rambouillet Sheep	MODERN SPECIES	19	PHLDA1 (ENSOARG00020002913)	ENSOARG00020002933 #7	OSBPL8 (ENSOARG00020003030) #9	BBS10 (ENSOARG00020003354) #8	ENSOARG00020003381	ZDHHC17 (ENSOARG00020003403) #11	CSRP2 (ENSOARG00020003468) #12	E2F7 (ENSOARG00020003529) #13	NAV3 (ENSOARG00020003813) #14	SYT1 (ENSOARG00020005626) #16	PAWR (ENSOARG00020005665) #17	PPP1R12A (ENSOARG00020005817) #18	PTPRQ (ENSOARG00020008080) #20	MYF6 (ENSOARG00020008943) #21	MYF6 (ENSOARG00020008989) #21	MYF5 (ENSOARG00020009026) #22	LIN7A (ENSOARG00020009053) #23	ACSS3 (ENSOARG00020009124) #24	PPFIA2 (ENSOARG00020009934) #25	CCDC59 (ENSOARG00020015621) #26	TMTC2 (ENSOARG00020015711) #28	SLC6A15 (ENSOARG00020007201) #29	TSPAN19 (ENSOARG00020007275)	ALX1 (ENSOARG00020007379) #31	RASSF9 (ENSOARG00020007430) #32	NTS (ENSOARG00020007471) #33	ENSOARG00020007547	MGAT4C (ENSOARG00020007579) #34	C12orf50 (ENSOARG00020007620) #35	C3H12orf29 (ENSOARG00020007796) #36	ENSOARG00020008023 #37
Goat	MODERN SPECIES	24	BBS10 (ENSCHIG00000016567) #8	OSBPL8 (ENSCHIG00000010416) #9	ZDHHC17 (ENSCHIG00000009471) #11	CSRP2 (ENSCHIG00000025767) #12	E2F7 (ENSCHIG00000023455) #13	ENSCHIG00000017418	ENSCHIG00000009714	NAV3 (ENSCHIG00000012255) #14	ENSCHIG00000020619	SYT1 (ENSCHIG00000027174) #16	PAWR (ENSCHIG00000014049) #17	PPP1R12A (ENSCHIG00000007263) #18	OTOGL (ENSCHIG00000001357) #19	PTPRQ (ENSCHIG00000026657) #20	MYF6 (ENSCHIG00000021667) #21	MYF5 (ENSCHIG00000015029) #22	LIN7A (ENSCHIG00000003123) #23	ACSS3 (ENSCHIG00000023281) #24	PPFIA2 (ENSCHIG00000022919) #25	ENSCHIG00000005384	ENSCHIG00000025817 #26	METTL25 (ENSCHIG00000003929) #27	TMTC2 (ENSCHIG00000021548) #28	SLC6A15 (ENSCHIG00000017725) #29	TSPAN19 (ENSCHIG00000013366)	LRRIQ1 (ENSCHIG00000027155) #30	ALX1 (ENSCHIG00000025423) #31	RASSF9 (ENSCHIG00000024146) #32	NTS (ENSCHIG00000015085) #33	MGAT4C (ENSCHIG00000026547) #34	C12orf50 (ENSCHIG00000016372) #35
Bovinae	ANCESTRAL SPECIES	17	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00390000012446.o.b	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000013187.b	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35
Bos	ANCESTRAL SPECIES	2	ENSGT00940000156622 #9	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.b.a.a.a.b	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00390000012446.o.b	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000003710.c.a.b.b	ENSGT00390000006546.i #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35
Bos_b	ANCESTRAL SPECIES	4	ENSGT00940000156622 #9	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.b.a.a.a.b	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00390000012446.o.b	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT01030000234758.a.a.b.a.a.b.b.a.a	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000013187.b	ENSGT00390000006546.i #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00390000005003.k.b	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34
Hybrid Bos Indicus	MODERN SPECIES	24	ENSBIXG00005029293	OSBPL8 (ENSBIXG00005007884) #9	ZDHHC17 (ENSBIXG00005000041) #11	CSRP2 (ENSBIXG00005007979) #12	E2F7 (ENSBIXG00005008016) #13	ENSBIXG00005008045	NAV3 (ENSBIXG00005000135) #14	ENSBIXG00005008283	SYT1 (ENSBIXG00005008356) #16	PAWR (ENSBIXG00005000179) #17	ENSBIXG00005000182	PPP1R12A (ENSBIXG00005000226) #18	OTOGL (ENSBIXG00005008900) #19	PTPRQ (ENSBIXG00005009087) #20	MYF6 (ENSBIXG00005009131) #21	MYF5 (ENSBIXG00005009143) #22	LIN7A (ENSBIXG00005009155) #23	ENSBIXG00005009169	ACSS3 (ENSBIXG00005009198) #24	ENSBIXG00005009217	ENSBIXG00005006705	PPFIA2 (ENSBIXG00005009447) #25	ENSBIXG00005009547 #26	ENSBIXG00005009553	METTL25 (ENSBIXG00005009587) #27	TMTC2 (ENSBIXG00005009679) #28	ENSBIXG00005000567	SLC6A15 (ENSBIXG00005009785) #29	TSPAN19 (ENSBIXG00005009801)	LRRIQ1 (ENSBIXG00005009865) #30	ALX1 (ENSBIXG00005009922) #31
Cow	MODERN SPECIES	24	BBS10 (ENSBTAG00000050467) #8	OSBPL8 (ENSBTAG00000004427) #9	ZDHHC17 (ENSBTAG00000021756) #11	CSRP2 (ENSBTAG00000013406) #12	E2F7 (ENSBTAG00000016931) #13	ENSBTAG00000054109	NAV3 (ENSBTAG00000009852) #14	ENSBTAG00000054695	SYT1 (ENSBTAG00000034693) #16	PAWR (ENSBTAG00000043949) #17	ENSBTAG00000048833	PPP1R12A (ENSBTAG00000014609) #18	OTOGL (ENSBTAG00000011336) #19	PTPRQ (ENSBTAG00000026977) #20	MYF6 (ENSBTAG00000014003) #21	MYF5 (ENSBTAG00000026972) #22	LIN7A (ENSBTAG00000011367) #23	ACSS3 (ENSBTAG00000018694) #24	PPFIA2 (ENSBTAG00000003036) #25	ENSBTAG00000053526	ENSBTAG00000052152	CCDC59 (ENSBTAG00000036282) #26	METTL25 (ENSBTAG00000008382) #27	TMTC2 (ENSBTAG00000002888) #28	ENSBTAG00000014765	SLC6A15 (ENSBTAG00000018432) #29	LRRIQ1 (ENSBTAG00000027900) #30	TSPAN19 (ENSBTAG00000047203)	ALX1 (ENSBTAG00000014977) #31	RASSF9 (ENSBTAG00000026966) #32	NTS (ENSBTAG00000005305) #33
Bos_a	ANCESTRAL SPECIES	3	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.b.a.a.a.b	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00390000012446.o.b	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.b.a.a.b.a.a.a	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000013187.b	ENSGT00390000003710.c.a.b.b	ENSGT00390000006546.i #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33
Wild yak	MODERN SPECIES	141															MYF6 (ENSBMUG00000012075) #21	MYF5 (ENSBMUG00000012079) #22	ENSBMUG00000012090 #23
Domestic yak	MODERN SPECIES	24	ENSBGRG00000009376 #12	E2F7 (ENSBGRG00000009145) #13	ENSBGRG00000009095	ENSBGRG00000009079	ENSBGRG00000009036	NAV3 (ENSBGRG00000007767) #14	SYT1 (ENSBGRG00000007621) #16	ENSBGRG00000007603	PAWR (ENSBGRG00000007479) #17	ENSBGRG00000007448	PPP1R12A (ENSBGRG00000006560) #18	OTOGL (ENSBGRG00000005461) #19	ENSBGRG00000005290	PTPRQ (ENSBGRG00000003831) #20	MYF6 (ENSBGRG00000003786) #21	MYF5 (ENSBGRG00000003759) #22	ENSBGRG00000003736	LIN7A (ENSBGRG00000003708) #23	ENSBGRG00000003689	ACSS3 (ENSBGRG00000003619) #24	ENSBGRG00000003602	ENSBGRG00000003592	PPFIA2 (ENSBGRG00000003359) #25	CCDC59 (ENSBGRG00000003316) #26	ENSBGRG00000003305	METTL25 (ENSBGRG00000003283) #27	ENSBGRG00000003272	TMTC2 (ENSBGRG00000003210) #28	ENSBGRG00000003173	ENSBGRG00000003156	SLC6A15 (ENSBGRG00000003135) #29
American bison	MODERN SPECIES	3377										SYT1 (ENSBBBG00000005031) #16	PAWR (ENSBBBG00000006786) #17	PPP1R12A (ENSBBBG00000020255) #18	OTOGL (ENSBBBG00000020070) #19	PTPRQ (ENSBBBG00000005139) #20	MYF6 (ENSBBBG00000007672) #21	MYF5 (ENSBBBG00000005327) #22	LIN7A (ENSBBBG00000019615) #23	ACSS3 (ENSBBBG00000019602) #24	PPFIA2 (ENSBBBG00000006966) #25	ENSBBBG00000004945	CCDC59 (ENSBBBG00000019197) #26	METTL25 (ENSBBBG00000004939) #27	TMTC2 (ENSBBBG00000009162) #28	SLC6A15 (ENSBBBG00000004924) #29	TSPAN19 (ENSBBBG00000019123)	LRRIQ1 (ENSBBBG00000004903) #30	ALX1 (ENSBBBG00000004860) #31	RASSF9 (ENSBBBG00000019025) #32	NTS (ENSBBBG00000019020) #33	MGAT4C (ENSBBBG00000004848) #34	ENSBBBG00000004839
Siberian musk deer	MODERN SPECIES	162									NAV3 (ENSMMSG00000008114) #14	SYT1 (ENSMMSG00000009031) #16	PAWR (ENSMMSG00000009120) #17	PPP1R12A (ENSMMSG00000009175) #18	OTOGL (ENSMMSG00000009620) #19	PTPRQ (ENSMMSG00000010710) #20	MYF6 (ENSMMSG00000011253) #21	MYF5 (ENSMMSG00000011275) #22	LIN7A (ENSMMSG00000011300) #23	ACSS3 (ENSMMSG00000011333) #24	ENSMMSG00000011493	PPFIA2 (ENSMMSG00000011641) #25	CCDC59 (ENSMMSG00000013247) #26	METTL25 (ENSMMSG00000013268) #27	TMTC2 (ENSMMSG00000013292) #28	SLC6A15 (ENSMMSG00000013333) #29	TSPAN19 (ENSMMSG00000013408)	LRRIQ1 (ENSMMSG00000013457) #30	ALX1 (ENSMMSG00000013694) #31	RASSF9 (ENSMMSG00000013706) #32	NTS (ENSMMSG00000013716) #33	MGAT4C (ENSMMSG00000013742) #34	ENSMMSG00000013762
Yarkand deer	MODERN SPECIES	22	OSBPL8 (ENSCHYG00000008637) #9	ZDHHC17 (ENSCHYG00000009052) #11	CSRP2 (ENSCHYG00000009422) #12	ENSCHYG00000009520	E2F7 (ENSCHYG00000009596) #13	ENSCHYG00000009932	NAV3 (ENSCHYG00000010069) #14	ENSCHYG00000011512	SYT1 (ENSCHYG00000011518) #16	PAWR (ENSCHYG00000011616) #17	ENSCHYG00000011841	PPP1R12A (ENSCHYG00000011940) #18	OTOGL (ENSCHYG00000013254) #19	PTPRQ (ENSCHYG00000015685) #20	MYF6 (ENSCHYG00000017934) #21	MYF5 (ENSCHYG00000018006) #22	LIN7A (ENSCHYG00000018063) #23	ACSS3 (ENSCHYG00000018161) #24	PPFIA2 (ENSCHYG00000018601) #25	ENSCHYG00000021532	CCDC59 (ENSCHYG00000021567) #26	METTL25 (ENSCHYG00000021623) #27	TMTC2 (ENSCHYG00000021769) #28	SLC6A15 (ENSCHYG00000021957) #29	TSPAN19 (ENSCHYG00000022031)	LRRIQ1 (ENSCHYG00000022133) #30	ALX1 (ENSCHYG00000022696) #31	RASSF9 (ENSCHYG00000022760) #32	NTS (ENSCHYG00000022786) #33	MGAT4C (ENSCHYG00000022826) #34	C12orf50 (ENSCHYG00000022875) #35
Camelidae	ANCESTRAL SPECIES	39	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35
Alpaca	MODERN SPECIES	1669													ENSVPAG00000001924	ENSVPAG00000001925 #20	MYF6 (ENSVPAG00000001926) #21	MYF5 (ENSVPAG00000001927) #22	LIN7A (ENSVPAG00000001928) #23	ACSS3 (ENSVPAG00000001929) #24	PPFIA2 (ENSVPAG00000001930) #25	CCDC59 (ENSVPAG00000001931) #26	METTL25 (ENSVPAG00000001932) #27
Arabian camel	MODERN SPECIES	3	ENSCDRG00005017029	PHLDA1 (ENSCDRG00005016995)	NAP1L1 (ENSCDRG00005016698) #7	BBS10 (ENSCDRG00005016659) #8	OSBPL8 (ENSCDRG00005016392) #9	ZDHHC17 (ENSCDRG00005016120) #11	CSRP2 (ENSCDRG00005016043) #12	E2F7 (ENSCDRG00005015968) #13	NAV3 (ENSCDRG00005014880) #14	SYT1 (ENSCDRG00005014660) #16	PAWR (ENSCDRG00005014596) #17	PPP1R12A (ENSCDRG00005012542) #18	OTOGL (ENSCDRG00005010509) #19	PTPRQ (ENSCDRG00005009356) #20	MYF6 (ENSCDRG00005009281) #21	MYF5 (ENSCDRG00005009235) #22	LIN7A (ENSCDRG00005009181) #23	ACSS3 (ENSCDRG00005008842) #24	PPFIA2 (ENSCDRG00005005786) #25	CCDC59 (ENSCDRG00005005635) #26	METTL25 (ENSCDRG00005005578) #27	TMTC2 (ENSCDRG00005005499) #28	SLC6A15 (ENSCDRG00005005426) #29	TSPAN19 (ENSCDRG00005005374)	LRRIQ1 (ENSCDRG00005005175) #30	ALX1 (ENSCDRG00005005138) #31	RASSF9 (ENSCDRG00005005130) #32	NTS (ENSCDRG00005005109) #33	MGAT4C (ENSCDRG00005005093) #34	C12orf50 (ENSCDRG00005021566) #35	C12orf29 (ENSCDRG00005021555) #36
Laurasiatheria_b	ANCESTRAL SPECIES	6	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00960000190133	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Carnivora	ANCESTRAL SPECIES	3	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00960000190133	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Felidae	ANCESTRAL SPECIES	2	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Panthera	ANCESTRAL SPECIES		ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Panthera_a	ANCESTRAL SPECIES	12	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35
leopard	MODERN SPECIES	27	ENSPPRG00000000117	BBS10 (ENSPPRG00000022774) #8	OSBPL8 (ENSPPRG00000023047) #9	ENSPPRG00000023878	ZDHHC17 (ENSPPRG00000024071) #11	CSRP2 (ENSPPRG00000024205) #12	E2F7 (ENSPPRG00000024442) #13	NAV3 (ENSPPRG00000022007) #14	SYT1 (ENSPPRG00000014210) #16	PAWR (ENSPPRG00000013959) #17	ENSPPRG00000013642	PPP1R12A (ENSPPRG00000012756) #18	OTOGL (ENSPPRG00000007761) #19	PTPRQ (ENSPPRG00000005300) #20	MYF6 (ENSPPRG00000003909) #21	MYF5 (ENSPPRG00000003820) #22	LIN7A (ENSPPRG00000003439) #23	ACSS3 (ENSPPRG00000003248) #24	PPFIA2 (ENSPPRG00000001816) #25	ENSPPRG00000024977	CCDC59 (ENSPPRG00000022500) #26	METTL25 (ENSPPRG00000020885) #27	TMTC2 (ENSPPRG00000018820) #28
lion	MODERN SPECIES	7	PHLDA1 (ENSPLOG00000001933)	NAP1L1 (ENSPLOG00000001982) #7	BBS10 (ENSPLOG00000002053) #8	OSBPL8 (ENSPLOG00000002092) #9	ZDHHC17 (ENSPLOG00000002249) #11	CSRP2 (ENSPLOG00000002279) #12	E2F7 (ENSPLOG00000002314) #13	NAV3 (ENSPLOG00000002454) #14	ENSPLOG00000002650	SYT1 (ENSPLOG00000002662) #16	PAWR (ENSPLOG00000002686) #17	PPP1R12A (ENSPLOG00000002780) #18	OTOGL (ENSPLOG00000003151) #19	PTPRQ (ENSPLOG00000003543) #20	MYF6 (ENSPLOG00000003667) #21	MYF5 (ENSPLOG00000003675) #22	LIN7A (ENSPLOG00000003686) #23	ACSS3 (ENSPLOG00000003703) #24	PPFIA2 (ENSPLOG00000003973) #25	CCDC59 (ENSPLOG00000004335) #26	METTL25 (ENSPLOG00000004346) #27	TMTC2 (ENSPLOG00000004411) #28	SLC6A15 (ENSPLOG00000004444) #29	TSPAN19 (ENSPLOG00000004469)	ENSPLOG00000004490	ALX1 (ENSPLOG00000004563) #31	RASSF9 (ENSPLOG00000004571) #32	NTS (ENSPLOG00000004580) #33	MGAT4C (ENSPLOG00000004588) #34	ENSPLOG00000004594	C12orf50 (ENSPLOG00000004616) #35
Tiger	MODERN SPECIES	285	GLIPR1 (ENSPTIG00000010519)	KRR1 (ENSPTIG00000009202)	NAP1L1 (ENSPTIG00000003186) #7	BBS10 (ENSPTIG00000020383) #8	OSBPL8 (ENSPTIG00000019983) #9	ZDHHC17 (ENSPTIG00000019755) #11	CSRP2 (ENSPTIG00000019308) #12	E2F7 (ENSPTIG00000016920) #13	NAV3 (ENSPTIG00000013673) #14	SYT1 (ENSPTIG00000013094) #16	PAWR (ENSPTIG00000012722) #17	PPP1R12A (ENSPTIG00000003820) #18	OTOGL (ENSPTIG00000017536) #19	PTPRQ (ENSPTIG00000014182) #20	MYF6 (ENSPTIG00000014009) #21	MYF5 (ENSPTIG00000013849) #22	LIN7A (ENSPTIG00000013465) #23	ACSS3 (ENSPTIG00000013083) #24	PPFIA2 (ENSPTIG00000008257) #25
Cat	MODERN SPECIES	238	ENSFCAG00000050261	PHLDA1 (ENSFCAG00000032023)	NAP1L1 (ENSFCAG00000000279) #7	OSBPL8 (ENSFCAG00000027470) #9	ZDHHC17 (ENSFCAG00000027034) #11	CSRP2 (ENSFCAG00000006548) #12	E2F7 (ENSFCAG00000010756) #13	NAV3 (ENSFCAG00000013128) #14	ENSFCAG00000048215	SYT1 (ENSFCAG00000024865) #16	PAWR (ENSFCAG00000026300) #17	PPP1R12A (ENSFCAG00000027965) #18	OTOGL (ENSFCAG00000022141) #19	PTPRQ (ENSFCAG00000026313) #20	MYF6 (ENSFCAG00000015010) #21	MYF5 (ENSFCAG00000015011) #22	LIN7A (ENSFCAG00000015014) #23	ACSS3 (ENSFCAG00000012992) #24	PPFIA2 (ENSFCAG00000012993) #25	CCDC59 (ENSFCAG00000028462) #26	METTL25 (ENSFCAG00000013377) #27	ENSFCAG00000035513	TMTC2 (ENSFCAG00000024338) #28	SLC6A15 (ENSFCAG00000029283) #29	TSPAN19 (ENSFCAG00000025693)	LRRIQ1 (ENSFCAG00000031743) #30	ALX1 (ENSFCAG00000034933) #31	RASSF9 (ENSFCAG00000006978) #32	NTS (ENSFCAG00000031116) #33	MGAT4C (ENSFCAG00000011896) #34	ENSFCAG00000051429
Caniformia	ANCESTRAL SPECIES	20	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00960000190133	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Canidae	ANCESTRAL SPECIES	12	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT01090000260040.a.a.a.c.b	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00940000155052.e.b.b.c.a
Canis_lupus	ANCESTRAL SPECIES	16	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713.q #13	ENSGT00940000158890.p.a.f	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT01090000260040.a.a.a.c.b	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00940000155052.e.b.b.c.a
Dog	MODERN SPECIES	6	OSBPL8 (ENSCAFG00845006103) #8	OSBPL8 (ENSCAFG00845006249) #9	ZDHHC17 (ENSCAFG00845006644) #11	ENSCAFG00845006746 #12	E2F7 (ENSCAFG00845006897) #13	ENSCAFG00845007259	NAV3 (ENSCAFG00845007345) #14	SYT1 (ENSCAFG00845007651) #16	PAWR (ENSCAFG00845007786) #17	PPP1R12A (ENSCAFG00845007952) #18	ENSCAFG00845008317	ENSCAFG00845008343	OTOGL (ENSCAFG00845008423) #19	PTPRQ (ENSCAFG00845008887) #20	MYF6 (ENSCAFG00845009704) #21	ENSCAFG00845009734 #22	LIN7A (ENSCAFG00845009762) #23	ACSS3 (ENSCAFG00845009887) #24	PPFIA2 (ENSCAFG00845010311) #25	CCDC59 (ENSCAFG00845011151) #26	METTL25 (ENSCAFG00845011219) #27	TMTC2 (ENSCAFG00845011393) #28	SLC6A15 (ENSCAFG00845011599) #29	TSPAN19 (ENSCAFG00845011710)	LRRIQ1 (ENSCAFG00845011806) #30	ALX1 (ENSCAFG00845012248) #31	RASSF9 (ENSCAFG00845012311) #32	ENSCAFG00845012341	NTS (ENSCAFG00845012392) #33	MGAT4C (ENSCAFG00845012439) #34	ENSCAFG00845016446
Dingo	MODERN SPECIES	277	OSBPL8 (ENSCAFG00020015356) #9	ZDHHC17 (ENSCAFG00020015453) #11	CSRP2 (ENSCAFG00020015512) #12	ENSCAFG00020015518 #13	ENSCAFG00020015522 #13	ENSCAFG00020015528	ENSCAFG00020015535	NAV3 (ENSCAFG00020015546) #14	ENSCAFG00020015601	SYT1 (ENSCAFG00020015603) #16	PAWR (ENSCAFG00020015607) #17	PPP1R12A (ENSCAFG00020015626) #18	OTOGL (ENSCAFG00020015840) #19	PTPRQ (ENSCAFG00020015957) #20	MYF6 (ENSCAFG00020016005) #21	MYF5 (ENSCAFG00020016010) #22	LIN7A (ENSCAFG00020016013) #23	ACSS3 (ENSCAFG00020016033) #24	PPFIA2 (ENSCAFG00020016113) #25	CCDC59 (ENSCAFG00020016153) #26	METTL25 (ENSCAFG00020016154) #27	TMTC2 (ENSCAFG00020016159) #28	ENSCAFG00020016180	SLC6A15 (ENSCAFG00020016183) #29	TSPAN19 (ENSCAFG00020016187)	LRRIQ1 (ENSCAFG00020016192) #30	ALX1 (ENSCAFG00020016217) #31	RASSF9 (ENSCAFG00020016220) #32	ENSCAFG00020016221	NTS (ENSCAFG00020016223) #33	MGAT4C (ENSCAFG00020016230) #34
Red fox	MODERN SPECIES	9	ENSVVUG00000009581	NAP1L1 (ENSVVUG00000009610) #7	BBS10 (ENSVVUG00000009650) #8	OSBPL8 (ENSVVUG00000009692) #9	ZDHHC17 (ENSVVUG00000009811) #11	CSRP2 (ENSVVUG00000009828) #12	E2F7 (ENSVVUG00000009839) #13	NAV3 (ENSVVUG00000009882) #14	SYT1 (ENSVVUG00000009998) #16	PAWR (ENSVVUG00000010028) #17	PPP1R12A (ENSVVUG00000010043) #18	OTOGL (ENSVVUG00000010103) #19	ENSVVUG00000010366	PTPRQ (ENSVVUG00000010403) #20	MYF6 (ENSVVUG00000010529) #21	ENSVVUG00000010537 #22	LIN7A (ENSVVUG00000010554) #23	ACSS3 (ENSVVUG00000010570) #24	PPFIA2 (ENSVVUG00000010745) #25	ENSVVUG00000010950	CCDC59 (ENSVVUG00000010954) #26	METTL25 (ENSVVUG00000010971) #27	TMTC2 (ENSVVUG00000011020) #28	SLC6A15 (ENSVVUG00000011094) #29	ENSVVUG00000011115	TSPAN19 (ENSVVUG00000011198)	LRRIQ1 (ENSVVUG00000011218) #30	ALX1 (ENSVVUG00000011346) #31	ENSVVUG00000011364	NTS (ENSVVUG00000011394) #33	MGAT4C (ENSVVUG00000011397) #34
Caniformia_b	ANCESTRAL SPECIES	18	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00960000190133	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Ursidae	ANCESTRAL SPECIES	13	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00960000190133	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Ursus	ANCESTRAL SPECIES	260											ENSGT00940000155394 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25
Polar bear	MODERN SPECIES	410											SYT1 (ENSUMAG00000004449) #16	PPP1R12A (ENSUMAG00000004409) #18	OTOGL (ENSUMAG00000004235) #19	PTPRQ (ENSUMAG00000004116) #20	MYF6 (ENSUMAG00000004099) #21	MYF5 (ENSUMAG00000004083) #22	LIN7A (ENSUMAG00000004070) #23	ACSS3 (ENSUMAG00000003597) #24	PPFIA2 (ENSUMAG00000003393) #25
American black bear	MODERN SPECIES	3995															MYF6 (ENSUAMG00000017169) #21	MYF5 (ENSUAMG00000017165) #22
Giant Panda	MODERN SPECIES	6	PHLDA1 (ENSAMEG00000006460)	NAP1L1 (ENSAMEG00000006463) #7	BBS10 (ENSAMEG00000006510) #8	OSBPL8 (ENSAMEG00000006513) #9	ZDHHC17 (ENSAMEG00000006600) #11	CSRP2 (ENSAMEG00000006632) #12	E2F7 (ENSAMEG00000007247) #13	ENSAMEG00000024301	NAV3 (ENSAMEG00000006673) #14	SYT1 (ENSAMEG00000013376) #16	PAWR (ENSAMEG00000013370) #17	PPP1R12A (ENSAMEG00000013280) #18	OTOGL (ENSAMEG00000013267) #19	PTPRQ (ENSAMEG00000013219) #20	MYF6 (ENSAMEG00000027013) #21	MYF5 (ENSAMEG00000013193) #22	LIN7A (ENSAMEG00000013191) #23	ACSS3 (ENSAMEG00000013162) #24	PPFIA2 (ENSAMEG00000013096) #25	CCDC59 (ENSAMEG00000016875) #26	METTL25 (ENSAMEG00000016877) #27	TMTC2 (ENSAMEG00000016881) #28	SLC6A15 (ENSAMEG00000009013) #29	TSPAN19 (ENSAMEG00000009009)	LRRIQ1 (ENSAMEG00000024972) #30	ALX1 (ENSAMEG00000009049) #31	RASSF9 (ENSAMEG00000006110) #32	NTS (ENSAMEG00000006112) #33	MGAT4C (ENSAMEG00000006123) #34	C12orf50 (ENSAMEG00000002419) #35	C12orf29 (ENSAMEG00000002394) #36
Mustelinae	ANCESTRAL SPECIES	4	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215.b.a #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Ferret	MODERN SPECIES	546													ENSMPUG00000004956 #20	ENSMPUG00000004951 #20	MYF6 (ENSMPUG00000004945) #21	MYF5 (ENSMPUG00000004935) #22	LIN7A (ENSMPUG00000004898) #23	ACSS3 (ENSMPUG00000004881) #24	ENSMPUG00000004817 #25
American mink	MODERN SPECIES	22	ENSNVIG00000003110 #7	BBS10 (ENSNVIG00000003073) #8	OSBPL8 (ENSNVIG00000002847) #9	ZDHHC17 (ENSNVIG00000002801) #11	ENSNVIG00000002763 #12	E2F7 (ENSNVIG00000002695) #13	NAV3 (ENSNVIG00000002412) #14	ENSNVIG00000002371	SYT1 (ENSNVIG00000002313) #16	PAWR (ENSNVIG00000002283) #17	PPP1R12A (ENSNVIG00000001940) #18	ENSNVIG00000001919	OTOGL (ENSNVIG00000001579) #19	PTPRQ (ENSNVIG00000001320) #20	MYF6 (ENSNVIG00000001298) #21	MYF5 (ENSNVIG00000001283) #22	LIN7A (ENSNVIG00000001269) #23	ACSS3 (ENSNVIG00000001229) #24	PPFIA2 (ENSNVIG00000000848) #25	TAP26 (ENSNVIG00000000828) #26	METTL25 (ENSNVIG00000000819) #27	TMTC2 (ENSNVIG00000000786) #28	ENSNVIG00000000773	S6A15 (ENSNVIG00000000728) #29	TSN19 (ENSNVIG00000000703)	LRRIQ1 (ENSNVIG00000000618) #30	ALX1 (ENSNVIG00000000603) #31	RASSF9 (ENSNVIG00000000592) #32	NEUT (ENSNVIG00000000561) #33	MGT4C (ENSNVIG00000000536) #34	ENSNVIG00000000519
Laurasiatheria_c	ANCESTRAL SPECIES	5	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Chiroptera	ANCESTRAL SPECIES	4	ENSGT00390000018775	ENSGT00940000167051	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Microchiroptera	ANCESTRAL SPECIES	2	ENSGT00390000018775	ENSGT00940000167051	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Microbat	MODERN SPECIES	946	BBS10 (ENSMLUG00000001850) #8	OSBPL8 (ENSMLUG00000005046) #9	ENSMLUG00000029930	ENSMLUG00000003587	ZDHHC17 (ENSMLUG00000002375) #11	CSRP2 (ENSMLUG00000002384) #12	E2F7 (ENSMLUG00000012116) #13	NAV3 (ENSMLUG00000010374) #14	ENSMLUG00000027140	SYT1 (ENSMLUG00000005752) #16	ENSMLUG00000005757 #17	PPP1R12A (ENSMLUG00000005477) #18	OTOGL (ENSMLUG00000005553) #19	PTPRQ (ENSMLUG00000006091) #20	MYF6 (ENSMLUG00000004940) #21	MYF5 (ENSMLUG00000004943) #22	LIN7A (ENSMLUG00000001526) #23	ACSS3 (ENSMLUG00000001527) #24	PPFIA2 (ENSMLUG00000001537) #25	CCDC59 (ENSMLUG00000008071) #26	METTL25 (ENSMLUG00000008084) #27	TMTC2 (ENSMLUG00000010233) #28	SLC6A15 (ENSMLUG00000011461) #29	TSPAN19 (ENSMLUG00000030562)	ALX1 (ENSMLUG00000008586) #31	RASSF9 (ENSMLUG00000008746) #32	NTS (ENSMLUG00000008733) #33	ENSMLUG00000022318	MGAT4C (ENSMLUG00000012722) #34	LYNX1 (ENSMLUG00000028919)	C12orf50 (ENSMLUG00000011631) #35
Greater horseshoe bat	MODERN SPECIES	1	ENSRFEG00010004593	ENSRFEG00010004601	NAP1L1 (ENSRFEG00010004645) #7	BBS10 (ENSRFEG00010004681) #8	OSBPL8 (ENSRFEG00010006253) #9	ZDHHC17 (ENSRFEG00010006316) #11	CSRP2 (ENSRFEG00010006389) #12	E2F7 (ENSRFEG00010006442) #13	NAV3 (ENSRFEG00010006668) #14	SYT1 (ENSRFEG00010007403) #16	PAWR (ENSRFEG00010007574) #17	PPP1R12A (ENSRFEG00010007686) #18	OTOGL (ENSRFEG00010007970) #19	PTPRQ (ENSRFEG00010009562) #20	MYF6 (ENSRFEG00010010368) #21	MYF5 (ENSRFEG00010010395) #22	LIN7A (ENSRFEG00010010463) #23	ACSS3 (ENSRFEG00010010509) #24	PPFIA2 (ENSRFEG00010011014) #25	CCDC59 (ENSRFEG00010014412) #26	METTL25 (ENSRFEG00010014462) #27	TMTC2 (ENSRFEG00010014525) #28	ENSRFEG00010014611	SLC6A15 (ENSRFEG00010014671) #29	TSPAN19 (ENSRFEG00010014831)	LRRIQ1 (ENSRFEG00010014978) #30	ALX1 (ENSRFEG00010015730) #31	RASSF9 (ENSRFEG00010015800) #32	NTS (ENSRFEG00010015856) #33	MGAT4C (ENSRFEG00010015934) #34	C12orf50 (ENSRFEG00010016011) #35
Megabat	MODERN SPECIES	899														ENSPVAG00000003333 #20	MYF6 (ENSPVAG00000003335) #21	MYF5 (ENSPVAG00000003336) #22	LIN7A (ENSPVAG00000003338) #23
Equus	ANCESTRAL SPECIES	21	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980.cb #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Donkey	MODERN SPECIES	11	KRR1 (ENSEASG00005021952)	PHLDA1 (ENSEASG00005027836)	NAP1L1 (ENSEASG00005021946) #7	BBS10 (ENSEASG00005021945) #8	OSBPL8 (ENSEASG00005021942) #9	ZDHHC17 (ENSEASG00005021939) #11	ENSEASG00005021936 #12	E2F7 (ENSEASG00005021935) #13	NAV3 (ENSEASG00005021551) #14	SYT1 (ENSEASG00005021375) #16	PAWR (ENSEASG00005033077) #17	PPP1R12A (ENSEASG00005021353) #18	OTOGL (ENSEASG00005021304) #19	PTPRQ (ENSEASG00005021271) #20	MYF6 (ENSEASG00005021268) #21	MYF5 (ENSEASG00005021266) #22	LIN7A (ENSEASG00005021265) #23	ENSEASG00005024557	ACSS3 (ENSEASG00005021261) #24	PPFIA2 (ENSEASG00005021241) #25	ENSEASG00005011113	CCDC59 (ENSEASG00005021237) #26	METTL25 (ENSEASG00005021236) #27	TMTC2 (ENSEASG00005021228) #28	SLC6A15 (ENSEASG00005021226) #29	TSPAN19 (ENSEASG00005021223)	LRRIQ1 (ENSEASG00005021215) #30	ALX1 (ENSEASG00005021209) #31	RASSF9 (ENSEASG00005030833) #32	ENSEASG00005027182 #33	ENSEASG00005021205
Atlantogenata	ANCESTRAL SPECIES	16	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Afrotheria	ANCESTRAL SPECIES	8	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
Afrotheria_a	ANCESTRAL SPECIES	8	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
Elephant	MODERN SPECIES	196	ENSLAFG00000008030	NAP1L1 (ENSLAFG00000005711) #7	BBS10 (ENSLAFG00000009397) #8	OSBPL8 (ENSLAFG00000009398) #9	ZDHHC17 (ENSLAFG00000006732) #11	CSRP2 (ENSLAFG00000006735) #12	ENSLAFG00000028909	E2F7 (ENSLAFG00000017902) #13	NAV3 (ENSLAFG00000001793) #14	SYT1 (ENSLAFG00000013359) #16	ENSLAFG00000007186 #17	PPP1R12A (ENSLAFG00000014619) #18	ENSLAFG00000016020 #19	PTPRQ (ENSLAFG00000009382) #20	MYF6 (ENSLAFG00000016476) #21	MYF5 (ENSLAFG00000016473) #22	LIN7A (ENSLAFG00000014801) #23	ACSS3 (ENSLAFG00000011051) #24	PPFIA2 (ENSLAFG00000011055) #25	CCDC59 (ENSLAFG00000015368) #26	METTL25 (ENSLAFG00000015370) #27	TMTC2 (ENSLAFG00000018670) #28	ENSLAFG00000029547	SLC6A15 (ENSLAFG00000006073) #29	ENSLAFG00000020855 #30	ALX1 (ENSLAFG00000013544) #31	RASSF9 (ENSLAFG00000028247) #32	NTS (ENSLAFG00000005894) #33	MGAT4C (ENSLAFG00000007280) #34	C12orf50 (ENSLAFG00000005231) #35	C12orf29 (ENSLAFG00000013286) #36
Hyrax	MODERN SPECIES	969															MYF6 (ENSPCAG00000001692) #21	MYF5 (ENSPCAG00000001722) #22
Tenrec	MODERN SPECIES	16487															ENSETEG00000011256 #21	MYF5 (ENSETEG00000011255) #22
Xenarthra	ANCESTRAL SPECIES	724													ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25
Armadillo	MODERN SPECIES	1911													OTOGL (ENSDNOG00000036627) #19	PTPRQ (ENSDNOG00000031827) #20	MYF6 (ENSDNOG00000019387) #21	MYF5 (ENSDNOG00000034747) #22	LIN7A (ENSDNOG00000024299) #23	ACSS3 (ENSDNOG00000015337) #24	PPFIA2 (ENSDNOG00000015350) #25
Sloth	MODERN SPECIES	13029																MYF5 (ENSCHOG00000008319) #22
Marsupialia	ANCESTRAL SPECIES	11	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.k #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
Opossum	MODERN SPECIES	7	ENSMODG00000044376	ENSMODG00000020456 #7	ENSMODG00000020458 #8	OSBPL8 (ENSMODG00000020459) #9	ENSMODG00000048422 #11	ENSMODG00000020464 #12	E2F7 (ENSMODG00000020465) #13	NAV3 (ENSMODG00000020466) #14	SYT1 (ENSMODG00000020467) #16	PAWR (ENSMODG00000020468) #17	PPP1R12A (ENSMODG00000020471) #18	ENSMODG00000025012	OTOGL (ENSMODG00000020473) #19	PTPRQ (ENSMODG00000020476) #20	MYF6 (ENSMODG00000039074) #21	MYF5 (ENSMODG00000020478) #22	LIN7A (ENSMODG00000020479) #23	ENSMODG00000037278	ACSS3 (ENSMODG00000020480) #24	ENSMODG00000020481 #25	ENSMODG00000020484 #26	METTL25 (ENSMODG00000020485) #27	TMTC2 (ENSMODG00000020487) #28	ENSMODG00000020488	SLC6A15 (ENSMODG00000020492) #29	ALX1 (ENSMODG00000020494) #31	ENSMODG00000041685	RASSF9 (ENSMODG00000020496) #32	NTS (ENSMODG00000020497) #33	MGAT4C (ENSMODG00000047285) #34	C12orf50 (ENSMODG00000020505) #35
Marsupialia_b	ANCESTRAL SPECIES	13	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.k #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
Diprotodontia	ANCESTRAL SPECIES	8	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.k #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
Diprotodontia_a	ANCESTRAL SPECIES	8	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.k #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000162858 #30	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
koala	MODERN SPECIES	51					ZDHHC17 (ENSPCIG00000005890) #11	CSRP2 (ENSPCIG00000005894) #12	E2F7 (ENSPCIG00000025823) #13	NAV3 (ENSPCIG00000025666) #14	ENSPCIG00000026362	SYT1 (ENSPCIG00000032719) #16	PAWR (ENSPCIG00000026365) #17	PPP1R12A (ENSPCIG00000026366) #18	OTOGL (ENSPCIG00000026368) #19	PTPRQ (ENSPCIG00000029148) #20	MYF6 (ENSPCIG00000029149) #21	MYF5 (ENSPCIG00000029150) #22	LIN7A (ENSPCIG00000029151) #23	ACSS3 (ENSPCIG00000035215) #24	PPFIA2 (ENSPCIG00000024777) #25	CCDC59 (ENSPCIG00000007808) #26	METTL25 (ENSPCIG00000007809) #27	TMTC2 (ENSPCIG00000032378) #28	ENSPCIG00000011311	SLC6A15 (ENSPCIG00000027156) #29	ENSPCIG00000009153 #30	ALX1 (ENSPCIG00000021266) #31	RASSF9 (ENSPCIG00000002684) #32	NTS (ENSPCIG00000009584) #33	MGAT4C (ENSPCIG00000034460) #34	C12orf50 (ENSPCIG00000000703) #35	C12orf29 (ENSPCIG00000000738) #36
Common wonbat	MODERN SPECIES	1095	ZDHHC17 (ENSVURG00010002037) #11	CSRP2 (ENSVURG00010002008) #12	E2F7 (ENSVURG00010001992) #13	ENSVURG00010001969	ENSVURG00010001942	ENSVURG00010001934	NAV3 (ENSVURG00010001745) #14	ENSVURG00010001638	ENSVURG00010001581	SYT1 (ENSVURG00010001565) #16	PAWR (ENSVURG00010001479) #17	PPP1R12A (ENSVURG00010001421) #18	OTOGL (ENSVURG00010001281) #19	PTPRQ (ENSVURG00010001162) #20	MYF6 (ENSVURG00010001122) #21	MYF5 (ENSVURG00010001088) #22	LIN7A (ENSVURG00010001078) #23	ACSS3 (ENSVURG00010000986) #24	PPFIA2 (ENSVURG00010000931) #25	CCDC59 (ENSVURG00010000865) #26	METTL25 (ENSVURG00010000829) #27	TMTC2 (ENSVURG00010000692) #28	ENSVURG00010000644	ENSVURG00010000614	ENSVURG00010000610	SLC6A15 (ENSVURG00010000556) #29	ENSVURG00010000506 #30	ALX1 (ENSVURG00010000474) #31	RASSF9 (ENSVURG00010000436) #32	NTS (ENSVURG00010015898) #33	MGAT4C (ENSVURG00010015889) #34
Wallaby	MODERN SPECIES	1972															MYF6 (ENSMEUG00000010618) #21	MYF5 (ENSMEUG00000010628) #22
Tasmanian devil	MODERN SPECIES	4	KRR1 (ENSSHAG00000001646)	ENSSHAG00000031318	NAP1L1 (ENSSHAG00000002304) #7	BBS10 (ENSSHAG00000001800) #8	OSBPL8 (ENSSHAG00000023268) #9	ZDHHC17 (ENSSHAG00000022371) #11	CSRP2 (ENSSHAG00000005571) #12	E2F7 (ENSSHAG00000002919) #13	NAV3 (ENSSHAG00000001971) #14	SYT1 (ENSSHAG00000009436) #16	ENSSHAG00000022708 #17	PPP1R12A (ENSSHAG00000005280) #18	OTOGL (ENSSHAG00000010191) #19	PTPRQ (ENSSHAG00000022062) #20	MYF6 (ENSSHAG00000013331) #21	MYF5 (ENSSHAG00000013391) #22	LIN7A (ENSSHAG00000029974) #23	ENSSHAG00000025569	ACSS3 (ENSSHAG00000005298) #24	PPFIA2 (ENSSHAG00000007734) #25	ENSSHAG00000032226	CCDC59 (ENSSHAG00000031706) #26	METTL25 (ENSSHAG00000007147) #27	ENSSHAG00000030042	TMTC2 (ENSSHAG00000031167) #28	SLC6A15 (ENSSHAG00000003371) #29	ENSSHAG00000031034 #30	ALX1 (ENSSHAG00000010658) #31	RASSF9 (ENSSHAG00000006974) #32	NTS (ENSSHAG00000007922) #33	MGAT4C (ENSSHAG00000008842) #34
Platypus	MODERN SPECIES	5	KRR1 (ENSOANG00000014451)	ENSOANG00000047378	ENSOANG00000004688	ENSOANG00000037830 #8	OSBPL8 (ENSOANG00000011301) #9	ZDHHC17 (ENSOANG00000047613) #11	CSRP2 (ENSOANG00000007447) #12	E2F7 (ENSOANG00000007450) #13	NAV3 (ENSOANG00000007451) #14	SYT1 (ENSOANG00000007531) #16	PAWR (ENSOANG00000043356) #17	PPP1R12A (ENSOANG00000001685) #18	OTOGL (ENSOANG00000004859) #19	PTPRQ (ENSOANG00000004855) #20	MYF6 (ENSOANG00000004854) #21	MYF5 (ENSOANG00000004853) #22	ENSOANG00000041857 #23	ACSS3 (ENSOANG00000004851) #24	PPFIA2 (ENSOANG00000004850) #25	ENSOANG00000042867 #26	ENSOANG00000004849 #27	TMTC2 (ENSOANG00000015210) #28	SLC6A15 (ENSOANG00000006324) #29	ENSOANG00000050599	ENSOANG00000006648	ALX1 (ENSOANG00000006647) #31	RASSF9 (ENSOANG00000006646) #32	NTS (ENSOANG00000006645) #33	MGAT4C (ENSOANG00000006644) #34	C12orf29 (ENSOANG00000006642) #36	C12orf50 (ENSOANG00000006643) #35
Sauria	ANCESTRAL SPECIES	4	ENSGT00390000002417 #8	ENSGT00960000190133	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Lepidosauria	ANCESTRAL SPECIES	3	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
Episquamata	ANCESTRAL SPECIES	3	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
Laterata	ANCESTRAL SPECIES	6	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT01040000241648	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Common wall lizard	MODERN SPECIES	1	OSBPL8 (ENSPMRG00000018504) #9	ZDHHC17 (ENSPMRG00000018520) #11	ENSPMRG00000018530	CSRP2 (ENSPMRG00000018535) #12	E2F7 (ENSPMRG00000018546) #13	NAV3 (ENSPMRG00000018638) #14	SYT1 (ENSPMRG00000018726) #16	PAWR (ENSPMRG00000018731) #17	PPP1R12A (ENSPMRG00000018742) #18	ENSPMRG00000018764	ENSPMRG00000018768	OTOGL (ENSPMRG00000018808) #19	ENSPMRG00000019031	PTPRQ (ENSPMRG00000019053) #20	MYF6 (ENSPMRG00000019140) #21	MYF5 (ENSPMRG00000019143) #22	LIN7A (ENSPMRG00000019147) #23	ACSS3 (ENSPMRG00000019167) #24	PPFIA2 (ENSPMRG00000019499) #25	ENSPMRG00000021433	CCDC59 (ENSPMRG00000021438) #26	METTL25 (ENSPMRG00000021455) #27	ENSPMRG00000021479	TMTC2 (ENSPMRG00000021488) #28	ENSPMRG00000021497	SLC6A15 (ENSPMRG00000021501) #29	ENSPMRG00000021518	ALX1 (ENSPMRG00000021545) #31	RASSF9 (ENSPMRG00000021551) #32	NTS (ENSPMRG00000009086) #33	MGAT4C (ENSPMRG00000009090) #34
Argentine black and white tegu	MODERN SPECIES	6	NAP1L1 (ENSSMRG00000001927) #7	OSBPL8 (ENSSMRG00000002083) #9	ZDHHC17 (ENSSMRG00000002140) #11	CSRP2 (ENSSMRG00000002146) #12	E2F7 (ENSSMRG00000002156) #13	NAV3 (ENSSMRG00000002199) #14	SYT1 (ENSSMRG00000010234) #16	PAWR (ENSSMRG00000010238) #17	PPP1R12A (ENSSMRG00000010257) #18	RPS16 (ENSSMRG00000010263)	OTOGL (ENSSMRG00000010267) #19	ENSSMRG00000010274	ENSSMRG00000010275	PTPRQ (ENSSMRG00000010276) #20	MYF6 (ENSSMRG00000010285) #21	MYF5 (ENSSMRG00000010286) #22	LIN7A (ENSSMRG00000010290) #23	ACSS3 (ENSSMRG00000010292) #24	PPFIA2 (ENSSMRG00000010302) #25	ENSSMRG00000010304	METTL25 (ENSSMRG00000010319) #27	TMTC2 (ENSSMRG00000010414) #28	SLC6A15 (ENSSMRG00000010425) #29	ENSSMRG00000010470	ENSSMRG00000010489	ALX1 (ENSSMRG00000010491) #31	RASSF9 (ENSSMRG00000010505) #32	NTS (ENSSMRG00000010506) #33	MGAT4C (ENSSMRG00000010507) #34	C12orf50 (ENSSMRG00000010526) #35	C12orf29 (ENSSMRG00000010527) #36
Toxicofera	ANCESTRAL SPECIES	7	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
Elapidae	ANCESTRAL SPECIES	6	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.f.a #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277.k #29	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
Elapidae_a	ANCESTRAL SPECIES	1	ENSGT00940000153362.a #7	ENSGT00960000190133	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.f.a #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277.k #29	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
Acanthophiinae	ANCESTRAL SPECIES		ENSGT00940000153362.a #7	ENSGT00960000190133	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.f.a #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277.k #29	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
Mainland tiger snake	MODERN SPECIES	20	ENSNSUG00000001793	ZDHHC17 (ENSNSUG00000001783) #11	CSRP2 (ENSNSUG00000001781) #12	E2F7 (ENSNSUG00000001756) #13	ENSNSUG00000001751	NAV3 (ENSNSUG00000001737) #14	SYT1 (ENSNSUG00000001720) #16	PAWR (ENSNSUG00000001717) #17	PPP1R12A (ENSNSUG00000000977) #18	ENSNSUG00000000970	ENSNSUG00000000966	OTOGL (ENSNSUG00000000909) #19	ENSNSUG00000000905	PTPRQ (ENSNSUG00000000888) #20	MYF6 (ENSNSUG00000000885) #21	MYF5 (ENSNSUG00000000881) #22	LIN7A (ENSNSUG00000000879) #23	ACSS3 (ENSNSUG00000000722) #24	PPFIA2 (ENSNSUG00000000679) #25	CCDC59 (ENSNSUG00000000657) #26	METTL25 (ENSNSUG00000000356) #27	TMTC2 (ENSNSUG00000000314) #28	ENSNSUG00000000296 #29	ENSNSUG00000000286 #29	ENSNSUG00000000256	ALX1 (ENSNSUG00000000235) #31	RASSF9 (ENSNSUG00000000215) #32	NTS (ENSNSUG00000000030) #33	MGAT4C (ENSNSUG00000000019) #34
Eastern brown snake	MODERN SPECIES		NAP1L1 (ENSPTXG00000007381) #7	ENSPTXG00000007380	OSBPL8 (ENSPTXG00000007376) #9	ZDHHC17 (ENSPTXG00000007375) #11	CSRP2 (ENSPTXG00000007374) #12	E2F7 (ENSPTXG00000007372) #13	NAV3 (ENSPTXG00000007360) #14	SYT1 (ENSPTXG00000007357) #16	PAWR (ENSPTXG00000007356) #17	PPP1R12A (ENSPTXG00000007355) #18	RPS16 (ENSPTXG00000007353)	OTOGL (ENSPTXG00000007346) #19	ENSPTXG00000007343	PTPRQ (ENSPTXG00000007341) #20	MYF6 (ENSPTXG00000007339) #21	MYF5 (ENSPTXG00000007338) #22	LIN7A (ENSPTXG00000007335) #23	ACSS3 (ENSPTXG00000007330) #24	PPFIA2 (ENSPTXG00000007321) #25	CCDC59 (ENSPTXG00000007319) #26	METTL25 (ENSPTXG00000007317) #27	TMTC2 (ENSPTXG00000007315) #28	ENSPTXG00000007314 #29	ENSPTXG00000007312 #29	ENSPTXG00000007310	ALX1 (ENSPTXG00000007309) #31	RASSF9 (ENSPTXG00000007307) #32	NTS (ENSPTXG00000007306) #33	MGAT4C (ENSPTXG00000007305) #34	C12orf50 (ENSPTXG00000007304) #35	C12orf29 (ENSPTXG00000007302) #36
Blue-lipped sea krait	MODERN SPECIES	6278															MYF6 (ENSLLTG00000009704) #21	MYF5 (ENSLLTG00000009715) #22
Indian cobra	MODERN SPECIES	6	PHLDA1 (ENSNNAG00000006109)	NAP1L1 (ENSNNAG00000006156) #7	OSBPL8 (ENSNNAG00000006212) #9	ZDHHC17 (ENSNNAG00000006609) #11	CSRP2 (ENSNNAG00000006626) #12	E2F7 (ENSNNAG00000006676) #13	NAV3 (ENSNNAG00000007065) #14	SYT1 (ENSNNAG00000007300) #16	PAWR (ENSNNAG00000007341) #17	PPP1R12A (ENSNNAG00000007491) #18	RPS16 (ENSNNAG00000010459)	OTOGL (ENSNNAG00000010528) #19	ENSNNAG00000011195	PTPRQ (ENSNNAG00000011257) #20	MYF6 (ENSNNAG00000011423) #21	MYF5 (ENSNNAG00000011436) #22	LIN7A (ENSNNAG00000011463) #23	ACSS3 (ENSNNAG00000011558) #24	PPFIA2 (ENSNNAG00000011658) #25	CCDC59 (ENSNNAG00000012004) #26	METTL25 (ENSNNAG00000012065) #27	TMTC2 (ENSNNAG00000012643) #28	SLC6A15 (ENSNNAG00000012726) #29	ENSNNAG00000012826	ALX1 (ENSNNAG00000012891) #31	RASSF9 (ENSNNAG00000012912) #32	NTS (ENSNNAG00000012925) #33	MGAT4C (ENSNNAG00000012939) #34	C12orf50 (ENSNNAG00000012961) #35	C12orf29 (ENSNNAG00000012986) #36	ENSNNAG00000012999 #37
Lizard	MODERN SPECIES	4	LGR5 (ENSACAG00000007193)	TSPAN8 (ENSACAG00000007164)	PTPRR (ENSACAG00000021144)	PTPRB (ENSACAG00000001460)	ENSACAG00000045283	ENSACAG00000045240	SYT1 (ENSACAG00000013826) #16	ENSACAG00000039009	PAWR (ENSACAG00000038363) #17	PPP1R12A (ENSACAG00000014016) #18	ENSACAG00000042872	ENSACAG00000014176	OTOGL (ENSACAG00000014205) #19	PTPRQ (ENSACAG00000014272) #20	MYF6 (ENSACAG00000042468) #21	MYF5 (ENSACAG00000014431) #22	LIN7A (ENSACAG00000014452) #23	ACSS3 (ENSACAG00000014473) #24	ENSACAG00000039448	PPFIA2 (ENSACAG00000014550) #25	ENSACAG00000014707	METTL25 (ENSACAG00000014713) #27	ENSACAG00000044939	ENSACAG00000034859	TMTC2 (ENSACAG00000014731) #28	ENSACAG00000042686	ENSACAG00000005259	SLC6A15 (ENSACAG00000010944) #29	ENSACAG00000011087	ALX1 (ENSACAG00000011108) #31	ENSACAG00000044352
tuatara	MODERN SPECIES	1455					ENSSPUG00000001612	ENSSPUG00000001605	ATP5F1C (ENSSPUG00000001593)	KIN (ENSSPUG00000001394)	ITIH2 (ENSSPUG00000001323)	ITIH5 (ENSSPUG00000001261)	ENSSPUG00000001249	SFMBT2 (ENSSPUG00000001165)	PRKCQ (ENSSPUG00000001072)	PFKFB3 (ENSSPUG00000001043)	RBM17 (ENSSPUG00000001036)	ENSSPUG00000001027 #22
Archelosauria	ANCESTRAL SPECIES	3	ENSGT00390000002417 #8	ENSGT00960000190133	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Cryptodira	ANCESTRAL SPECIES	11	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Testudinoidea	ANCESTRAL SPECIES	4	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713.u #13	ENSGT00940000157713.v #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Emydidae	ANCESTRAL SPECIES	10	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713.u #13	ENSGT00940000157713.v #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000183194.a.b
painted turtle	MODERN SPECIES		P4HA3 (ENSCPBG00000000051)	ENSCPBG00000000052	ENSCPBG00000000053	SPCS2 (ENSCPBG00000000054)	XRRA1 (ENSCPBG00000000055)	RNF169 (ENSCPBG00000000056)	SYT1 (ENSCPBG00000000057) #16	ENSCPBG00000000058	PAWR (ENSCPBG00000000059) #17	PPP1R12A (ENSCPBG00000000060) #18	RPS16 (ENSCPBG00000000062)	OTOGL (ENSCPBG00000000063) #19	ENSCPBG00000000065	PTPRQ (ENSCPBG00000000067) #20	MYF6 (ENSCPBG00000000068) #21	MYF5 (ENSCPBG00000000069) #22	LIN7A (ENSCPBG00000000070) #23	ACSS3 (ENSCPBG00000000071) #24	ENSCPBG00000000072	PPFIA2 (ENSCPBG00000000073) #25	CCDC59 (ENSCPBG00000000075) #26	METTL25 (ENSCPBG00000000076) #27	TMTC2 (ENSCPBG00000000077) #28	SLC6A15 (ENSCPBG00000000079) #29	TSPAN19 (ENSCPBG00000000080)	ENSCPBG00000000081	ENSCPBG00000000082	ALX1 (ENSCPBG00000000083) #31	RASSF9 (ENSCPBG00000000084) #32	NTS (ENSCPBG00000000085) #33	MGAT4C (ENSCPBG00000000086) #34
Three-toed box turtle	MODERN SPECIES	28	NAP1L1 (ENSTMTG00000017966) #7	BBS10 (ENSTMTG00000017983) #8	OSBPL8 (ENSTMTG00000018028) #9	ZDHHC17 (ENSTMTG00000018059) #11	CSRP2 (ENSTMTG00000018107) #12	ENSTMTG00000018112 #13	ENSTMTG00000018124 #13	NAV3 (ENSTMTG00000018146) #14	SYT1 (ENSTMTG00000018366) #16	PAWR (ENSTMTG00000018399) #17	PPP1R12A (ENSTMTG00000018415) #18	RPS16 (ENSTMTG00000018474)	OTOGL (ENSTMTG00000018509) #19	PTPRQ (ENSTMTG00000018868) #20	MYF6 (ENSTMTG00000018967) #21	MYF5 (ENSTMTG00000000077) #22	ENSTMTG00000000099 #23	LIN7A (ENSTMTG00000000157) #23	ACSS3 (ENSTMTG00000000183) #24	ENSTMTG00000000244 #25	ENSTMTG00000000306 #25	CCDC59 (ENSTMTG00000000341) #26	METTL25 (ENSTMTG00000000386) #27	TMTC2 (ENSTMTG00000000433) #28	SLC6A15 (ENSTMTG00000000460) #29	ENSTMTG00000000487	TSPAN19 (ENSTMTG00000000501)	ENSTMTG00000000530	ALX1 (ENSTMTG00000000570) #31	RASSF9 (ENSTMTG00000000576) #32	NTS (ENSTMTG00000000587) #33
Testudinidae	ANCESTRAL SPECIES	12	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713.u #13	ENSGT00940000157713.v #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
Goode s thornscrub tortoise	MODERN SPECIES		NAP1L1 (ENSGEVG00005000012) #7	BBS10 (ENSGEVG00005008898) #8	OSBPL8 (ENSGEVG00005008789) #9	ZDHHC17 (ENSGEVG00005008730) #11	CSRP2 (ENSGEVG00005008707) #12	ENSGEVG00005008668 #13	ENSGEVG00005008646 #13	NAV3 (ENSGEVG00005008397) #14	SYT1 (ENSGEVG00005008297) #16	PAWR (ENSGEVG00005008262) #17	PPP1R12A (ENSGEVG00005008199) #18	RPS16 (ENSGEVG00005008158)	OTOGL (ENSGEVG00005007663) #19	PTPRQ (ENSGEVG00005007409) #20	MYF6 (ENSGEVG00005007365) #21	MYF5 (ENSGEVG00005007350) #22	LIN7A (ENSGEVG00005007306) #23	ACSS3 (ENSGEVG00005007236) #24	PPFIA2 (ENSGEVG00005007013) #25	CCDC59 (ENSGEVG00005006965) #26	METTL25 (ENSGEVG00005006938) #27	TMTC2 (ENSGEVG00005006853) #28	ENSGEVG00005006829	ENSGEVG00005006780 #29	ENSGEVG00005006758 #29	ENSGEVG00005006696	ALX1 (ENSGEVG00005006662) #31	RASSF9 (ENSGEVG00005006645) #32	NTS (ENSGEVG00005006613) #33	MGAT4C (ENSGEVG00005006595) #34	C12orf50 (ENSGEVG00005006563) #35
Abingdon island giant tortoise	MODERN SPECIES	2351			ENSCABG00000020097	ENSCABG00000020235	ENSCABG00000020236	ENSCABG00000020237	KLF8 (ENSCABG00000020238)	ENSCABG00000020239	ENSCABG00000020241	ENSCABG00000020242	ENSCABG00000020244	OTOGL (ENSCABG00000020245) #19	ENSCABG00000020248	PTPRQ (ENSCABG00000020251) #20	MYF6 (ENSCABG00000020254) #21	MYF5 (ENSCABG00000020256) #22
Chinese turtle	MODERN SPECIES	718			ENSPSIG00000001298	ZDHHC17 (ENSPSIG00000012905) #11	CSRP2 (ENSPSIG00000012637) #12	E2F7 (ENSPSIG00000012629) #13	NAV3 (ENSPSIG00000009060) #14	SYT1 (ENSPSIG00000007501) #16	PAWR (ENSPSIG00000007487) #17	PPP1R12A (ENSPSIG00000017200) #18	ENSPSIG00000016930	ENSPSIG00000016823	OTOGL (ENSPSIG00000014034) #19	ENSPSIG00000013550	MYF6 (ENSPSIG00000012468) #21	MYF5 (ENSPSIG00000012000) #22	LIN7A (ENSPSIG00000011871) #23	ACSS3 (ENSPSIG00000009322) #24	PPFIA2 (ENSPSIG00000007454) #25	METTL25 (ENSPSIG00000007019) #27	TMTC2 (ENSPSIG00000006034) #28
Archosauria	ANCESTRAL SPECIES	4	ENSGT00390000002417 #8	ENSGT00960000190133	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Australian saltwater crocodile	MODERN SPECIES	49	BBS10 (ENSCPRG00005006087) #8	OSBPL8 (ENSCPRG00005006069) #9	ZDHHC17 (ENSCPRG00005006020) #11	CSRP2 (ENSCPRG00005005963) #12	E2F7 (ENSCPRG00005005958) #13	ENSCPRG00005005917	NAV3 (ENSCPRG00005004050) #14	SYT1 (ENSCPRG00005003800) #16	PAWR (ENSCPRG00005003774) #17	PPP1R12A (ENSCPRG00005003724) #18	RPS16 (ENSCPRG00005003696)	OTOGL (ENSCPRG00005003554) #19	ENSCPRG00005003525	PTPRQ (ENSCPRG00005003495) #20	MYF6 (ENSCPRG00005003486) #21	MYF5 (ENSCPRG00005003473) #22	ENSCPRG00005003470 #23	LIN7A (ENSCPRG00005003468) #23	ACSS3 (ENSCPRG00005003271) #24	PPFIA2 (ENSCPRG00005003178) #25	CCDC59 (ENSCPRG00005003134) #26	METTL25 (ENSCPRG00005003132) #27	TMTC2 (ENSCPRG00005003097) #28	SLC6A15 (ENSCPRG00005003057) #29	TSPAN19 (ENSCPRG00005003030)	ENSCPRG00005003015	ENSCPRG00005003000	ALX1 (ENSCPRG00005002988) #31	RASSF9 (ENSCPRG00005002976) #32	NTS (ENSCPRG00005002955) #33	MGAT4C (ENSCPRG00005002949) #34
Aves	ANCESTRAL SPECIES	1	ENSGT00390000002417 #8	ENSGT00960000190133	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Neognathae	ANCESTRAL SPECIES	3	ENSGT00390000002417 #8	ENSGT00960000190133	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Neognathae_b	ANCESTRAL SPECIES	2	ENSGT00390000002417 #8	ENSGT00960000190133	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Passeriformes	ANCESTRAL SPECIES	3	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
Great tit	MODERN SPECIES	10	NAP1L1 (ENSPMJG00000012651) #7	OSBPL8 (ENSPMJG00000012652) #9	ZDHHC17 (ENSPMJG00000012653) #11	CSRP2 (ENSPMJG00000012654) #12	E2F7 (ENSPMJG00000012655) #13	NAV3 (ENSPMJG00000012656) #14	SYT1 (ENSPMJG00000012662) #16	ENSPMJG00000012663	PAWR (ENSPMJG00000012664) #17	PPP1R12A (ENSPMJG00000012665) #18	RPS16 (ENSPMJG00000012667)	OTOGL (ENSPMJG00000012668) #19	ENSPMJG00000012669	PTPRQ (ENSPMJG00000012670) #20	MYF6 (ENSPMJG00000012671) #21	MYF5 (ENSPMJG00000012672) #22	LIN7A (ENSPMJG00000012673) #23	ACSS3 (ENSPMJG00000012674) #24	PPFIA2 (ENSPMJG00000012675) #25	CCDC59 (ENSPMJG00000012676) #26	METTL25 (ENSPMJG00000012677) #27	TMTC2 (ENSPMJG00000012678) #28	SLC6A15 (ENSPMJG00000012682) #29	ENSPMJG00000012685	ALX1 (ENSPMJG00000012686) #31	RASSF9 (ENSPMJG00000012688) #32	NTS (ENSPMJG00000012689) #33	MGAT4C (ENSPMJG00000012690) #34	C12orf50 (ENSPMJG00000012691) #35	C12orf29 (ENSPMJG00000012692) #36	CEP290 (ENSPMJG00000012693) #37
Passeriformes_d	ANCESTRAL SPECIES	3	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
Flycatcher	MODERN SPECIES	10	KRR1 (ENSFALG00000010395)	PHLDA1 (ENSFALG00000014745)	NAP1L1 (ENSFALG00000010403) #7	OSBPL8 (ENSFALG00000010404) #9	ZDHHC17 (ENSFALG00000010415) #11	CSRP2 (ENSFALG00000010426) #12	E2F7 (ENSFALG00000010433) #13	NAV3 (ENSFALG00000010449) #14	SYT1 (ENSFALG00000010476) #16	PPP1R12A (ENSFALG00000010487) #18	ENSFALG00000028909	OTOGL (ENSFALG00000010495) #19	ENSFALG00000026391	PTPRQ (ENSFALG00000010498) #20	MYF6 (ENSFALG00000010503) #21	MYF5 (ENSFALG00000010507) #22	LIN7A (ENSFALG00000010511) #23	ACSS3 (ENSFALG00000010517) #24	PPFIA2 (ENSFALG00000010521) #25	CCDC59 (ENSFALG00000010525) #26	METTL25 (ENSFALG00000010529) #27	TMTC2 (ENSFALG00000010537) #28	SLC6A15 (ENSFALG00000010541) #29	ENSFALG00000028693	ALX1 (ENSFALG00000010547) #31	RASSF9 (ENSFALG00000027104) #32	NTS (ENSFALG00000025234) #33	MGAT4C (ENSFALG00000010557) #34	C12orf50 (ENSFALG00000010559) #35	C12orf29 (ENSFALG00000023606) #36	CEP290 (ENSFALG00000010610) #37
Passeriformes_g	ANCESTRAL SPECIES	4	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00500000044938 #36	ENSGT00730000111039.C #37	ENSGT00940000157538
Passeroidea	ANCESTRAL SPECIES	3	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00500000044938 #36	ENSGT00730000111039.C #37	ENSGT00940000157538
Zebra finch	MODERN SPECIES	11	NAP1L1 (ENSTGUG00000007412) #7	BBS10 (ENSTGUG00000007444) #8	OSBPL8 (ENSTGUG00000007445) #9	ZDHHC17 (ENSTGUG00000007477) #11	CSRP2 (ENSTGUG00000028299) #12	E2F7 (ENSTGUG00000007515) #13	NAV3 (ENSTGUG00000007519) #14	SYT1 (ENSTGUG00000007572) #16	PAWR (ENSTGUG00000020006) #17	PPP1R12A (ENSTGUG00000007603) #18	RPS16 (ENSTGUG00000007667)	OTOGL (ENSTGUG00000007680) #19	ENSTGUG00000023557	PTPRQ (ENSTGUG00000007720) #20	MYF6 (ENSTGUG00000007751) #21	MYF5 (ENSTGUG00000007755) #22	LIN7A (ENSTGUG00000007757) #23	ACSS3 (ENSTGUG00000007763) #24	PPFIA2 (ENSTGUG00000007778) #25	CCDC59 (ENSTGUG00000007835) #26	METTL25 (ENSTGUG00000007841) #27	TMTC2 (ENSTGUG00000007855) #28	SLC6A15 (ENSTGUG00000007865) #29	ENSTGUG00000007889	ALX1 (ENSTGUG00000007899) #31	RASSF9 (ENSTGUG00000007908) #32	NTS (ENSTGUG00000027877) #33	MGAT4C (ENSTGUG00000007933) #34	ENSTGUG00000025254	C12orf29 (ENSTGUG00000007945) #36	CEP290 (ENSTGUG00000007963) #37
Common canary	MODERN SPECIES	6	NAP1L1 (ENSSCAG00000008861) #7	OSBPL8 (ENSSCAG00000008836) #9	ZDHHC17 (ENSSCAG00000008792) #11	CSRP2 (ENSSCAG00000008783) #12	E2F7 (ENSSCAG00000008773) #13	ENSSCAG00000008755 #14	ENSSCAG00000008738 #14	SYT1 (ENSSCAG00000008697) #16	PAWR (ENSSCAG00000008657) #17	PPP1R12A (ENSSCAG00000008580) #18	RPS16 (ENSSCAG00000008547)	OTOGL (ENSSCAG00000008492) #19	ENSSCAG00000008481	PTPRQ (ENSSCAG00000008462) #20	MYF6 (ENSSCAG00000008454) #21	MYF5 (ENSSCAG00000008451) #22	LIN7A (ENSSCAG00000008443) #23	ACSS3 (ENSSCAG00000008416) #24	PPFIA2 (ENSSCAG00000008164) #25	CCDC59 (ENSSCAG00000008055) #26	METTL25 (ENSSCAG00000007930) #27	MGAT4C (ENSSCAG00000007907) #34	NTS (ENSSCAG00000007904) #33	RASSF9 (ENSSCAG00000007901) #32	ALX1 (ENSSCAG00000007890) #31	ENSSCAG00000007880	SLC6A15 (ENSSCAG00000007869) #29	TMTC2 (ENSSCAG00000007852) #28	C12orf29 (ENSSCAG00000007807) #36	CEP290 (ENSSCAG00000007595) #37	TMTC3 (ENSSCAG00000007568)
Medium ground finch	MODERN SPECIES	13	ENSGFOG00000005356	ENSGFOG00000005348	KRR1 (ENSGFOG00000005331)	NAP1L1 (ENSGFOG00000005292) #7	OSBPL8 (ENSGFOG00000005268) #9	ZDHHC17 (ENSGFOG00000005185) #11	CSRP2 (ENSGFOG00000005156) #12	E2F7 (ENSGFOG00000005143) #13	NAV3 (ENSGFOG00000005066) #14	SYT1 (ENSGFOG00000005048) #16	PPP1R12A (ENSGFOG00000005009) #18	RPS16 (ENSGFOG00000004986)	OTOGL (ENSGFOG00000004777) #19	PTPRQ (ENSGFOG00000004653) #20	MYF6 (ENSGFOG00000004628) #21	MYF5 (ENSGFOG00000004624) #22	LIN7A (ENSGFOG00000004616) #23	ACSS3 (ENSGFOG00000004536) #24	ENSGFOG00000000855 #25	CCDC59 (ENSGFOG00000000604) #26	METTL25 (ENSGFOG00000000588) #27	TMTC2 (ENSGFOG00000000573) #28
Neognathae_c	ANCESTRAL SPECIES		ENSGT00390000002417 #8	ENSGT00960000190133	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00500000044938 #36	ENSGT00730000111039.C #37
Kakapo	MODERN SPECIES	20	ENSSHBG00005003428	OSBPL8 (ENSSHBG00005003509) #9	ZDHHC17 (ENSSHBG00005003761) #11	CSRP2 (ENSSHBG00005003817) #12	E2F7 (ENSSHBG00005003861) #13	NAV3 (ENSSHBG00005004247) #14	ENSSHBG00005004847	SYT1 (ENSSHBG00005004867) #16	PAWR (ENSSHBG00005004872) #17	PPP1R12A (ENSSHBG00005004881) #18	RPS16 (ENSSHBG00005004902)	OTOGL (ENSSHBG00005004951) #19	ENSSHBG00005004998	PTPRQ (ENSSHBG00005005034) #20	MYF6 (ENSSHBG00005005072) #21	MYF5 (ENSSHBG00005005076) #22	LIN7A (ENSSHBG00005005088) #23	ACSS3 (ENSSHBG00005005107) #24	PPFIA2 (ENSSHBG00005005123) #25	CCDC59 (ENSSHBG00005005147) #26	METTL25 (ENSSHBG00005005155) #27	TMTC2 (ENSSHBG00005005167) #28	SLC6A15 (ENSSHBG00005005181) #29	TSPAN19 (ENSSHBG00005005237)	ENSSHBG00005005257	ALX1 (ENSSHBG00005005283) #31	ENSSHBG00005005293	RASSF9 (ENSSHBG00005005303) #32	NTS (ENSSHBG00005005318) #33	MGAT4C (ENSSHBG00005005332) #34	C12orf29 (ENSSHBG00005005351) #36
Golden eagle	MODERN SPECIES	18	NAP1L1 (ENSACCG00020011243) #7	BBS10 (ENSACCG00020011231) #8	OSBPL8 (ENSACCG00020011213) #9	ZDHHC17 (ENSACCG00020011189) #11	CSRP2 (ENSACCG00020011176) #12	E2F7 (ENSACCG00020011147) #13	NAV3 (ENSACCG00020011091) #14	SYT1 (ENSACCG00020011033) #16	PAWR (ENSACCG00020011015) #17	PPP1R12A (ENSACCG00020010939) #18	RPS16 (ENSACCG00020010874)	OTOGL (ENSACCG00020010835) #19	ENSACCG00020010786	PTPRQ (ENSACCG00020010748) #20	MYF6 (ENSACCG00020010717) #21	MYF5 (ENSACCG00020010710) #22	LIN7A (ENSACCG00020010701) #23	ACSS3 (ENSACCG00020010468) #24	PPFIA2 (ENSACCG00020010168) #25	ENSACCG00020010123	CCDC59 (ENSACCG00020010109) #26	ENSACCG00020016084	METTL25 (ENSACCG00020016068) #27	TMTC2 (ENSACCG00020016051) #28	ENSACCG00020016040	SLC6A15 (ENSACCG00020016027) #29	TSPAN19 (ENSACCG00020016013)	ENSACCG00020015998	ALX1 (ENSACCG00020015990) #31	RASSF9 (ENSACCG00020015979) #32	NTS (ENSACCG00020015965) #33
Galloanserae	ANCESTRAL SPECIES	3	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Anatidae	ANCESTRAL SPECIES	14	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT01100000267073	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Pink-footed goose	MODERN SPECIES	36	NAP1L1 (ENSABRG00000002153) #7	BBS10 (ENSABRG00000002187) #8	OSBPL8 (ENSABRG00000002275) #9	ZDHHC17 (ENSABRG00000002383) #11	CSRP2 (ENSABRG00000002441) #12	E2F7 (ENSABRG00000002456) #13	NAV3 (ENSABRG00000002539) #14	ENSABRG00000002691	SYT1 (ENSABRG00000002806) #16	PAWR (ENSABRG00000002832) #17	PPP1R12A (ENSABRG00000002856) #18	RPS16 (ENSABRG00000002997)	OTOGL (ENSABRG00000003060) #19	PTPRQ (ENSABRG00000003711) #20	MYF6 (ENSABRG00000003882) #21	MYF5 (ENSABRG00000003896) #22	LIN7A (ENSABRG00000003928) #23	ENSABRG00000003943 #24	ENSABRG00000003973 ##25	CHADL (ENSABRG00000003979)	RANGAP1 (ENSABRG00000004047)	ZC3H7B (ENSABRG00000004538)	TEF (ENSABRG00000004576)	TOB2 (ENSABRG00000004605)	PHF5A (ENSABRG00000004614)	ACO2 (ENSABRG00000004640)	POLR3H (ENSABRG00000004688)	CSDC2 (ENSABRG00000004705)	PMM1 (ENSABRG00000004715)	DESI1 (ENSABRG00000004740)	XRCC6 (ENSABRG00000004750)
Duck	MODERN SPECIES		NAP1L1 (ENSAPLG00000016178) #7	OSBPL8 (ENSAPLG00000016005) #9	ZDHHC17 (ENSAPLG00000014034) #11	ENSAPLG00000014346	E2F7 (ENSAPLG00000014506) #13	NAV3 (ENSAPLG00000014672) #14	ENSAPLG00000029309	SYT1 (ENSAPLG00000014912) #16	PAWR (ENSAPLG00000027740) #17	PPP1R12A (ENSAPLG00000015197) #18	RPS16 (ENSAPLG00000015907)	OTOGL (ENSAPLG00000015946) #19	ENSAPLG00000019979	PTPRQ (ENSAPLG00000016187) #20	MYF6 (ENSAPLG00000002254) #21	MYF5 (ENSAPLG00000001124) #22	ENSAPLG00000001136 #23	LIN7A (ENSAPLG00000017756) #23	ENSAPLG00000029393	RANGAP1 (ENSAPLG00000006767)	ZC3H7B (ENSAPLG00000005880)	TEF (ENSAPLG00000005838)	TOB2 (ENSAPLG00000023708)	PHF5A (ENSAPLG00000021195)	ACO2 (ENSAPLG00000005198)	POLR3H (ENSAPLG00000005063)	CSDC2 (ENSAPLG00000005057)	DESI1 (ENSAPLG00000016507)	XRCC6 (ENSAPLG00000004469)	SNU13 (ENSAPLG00000001022)	ENSAPLG00000030477
Phasianidae	ANCESTRAL SPECIES		ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Japanese quail	MODERN SPECIES		NAP1L1 (ENSCJPG00005016162) #7	BBS10 (ENSCJPG00005016163) #8	OSBPL8 (ENSCJPG00005016164) #9	ZDHHC17 (ENSCJPG00005016170) #11	CSRP2 (ENSCJPG00005016171) #12	E2F7 (ENSCJPG00005016173) #13	ENSCJPG00005016175	NAV3 (ENSCJPG00005016185) #14	SYT1 (ENSCJPG00005016211) #16	PAWR (ENSCJPG00005016216) #17	PPP1R12A (ENSCJPG00005016217) #18	RPS16 (ENSCJPG00005000776)	OTOGL (ENSCJPG00005000816) #19	PTPRQ (ENSCJPG00005001013) #20	MYF6 (ENSCJPG00005001103) #21	MYF5 (ENSCJPG00005001107) #22	LIN7A (ENSCJPG00005001112) #23	ACSS3 (ENSCJPG00005001150) #24	PPFIA2 (ENSCJPG00005001332) #25	CCDC59 (ENSCJPG00005004695) #26	METTL25 (ENSCJPG00005004697) #27	TMTC2 (ENSCJPG00005004705) #28	SLC6A15 (ENSCJPG00005004747) #29	ENSCJPG00005004764	ALX1 (ENSCJPG00005004774) #31	RASSF9 (ENSCJPG00005004777) #32	NTS (ENSCJPG00005004778) #33	MGAT4C (ENSCJPG00005004780) #34	C12orf50 (ENSCJPG00005004807) #35	C12orf29 (ENSCJPG00005004811) #36	ENSCJPG00005004813 #37
Phasianidae_b	ANCESTRAL SPECIES	9	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00920000149095.b #35	ENSGT00500000044938 #36
Chicken	MODERN SPECIES		PHLDA1 (ENSGALG00010014238)	NAP1L1 (ENSGALG00010013389) #7	BBS10 (ENSGALG00010013400) #8	OSBPL8 (ENSGALG00010013444) #9	ZDHHC17 (ENSGALG00010013476) #11	CSRP2 (ENSGALG00010013516) #12	E2F7 (ENSGALG00010013538) #13	NAV3 (ENSGALG00010013648) #14	SYT1 (ENSGALG00010012026) #16	PAWR (ENSGALG00010013283) #17	PPP1R12A (ENSGALG00010013333) #18	RPS16 (ENSGALG00010013358)	OTOGL (ENSGALG00010013364) #19	PTPRQ (ENSGALG00010012230) #20	MYF6 (ENSGALG00010012253) #21	MYF5 (ENSGALG00010012264) #22	ENSGALG00010012271 #23	ENSGALG00010014881 #23	ACSS3 (ENSGALG00010012337) #24	PPFIA2 (ENSGALG00010012450) #25	ENSGALG00010013569	CCDC59 (ENSGALG00010010017) #26	METTL25 (ENSGALG00010010042) #27	TMTC2 (ENSGALG00010011067) #28	SLC6A15 (ENSGALG00010011117) #29	TSPAN19 (ENSGALG00010011168)	ENSGALG00010011199	ALX1 (ENSGALG00010011243) #31	RASSF9 (ENSGALG00010011313) #32	NTS (ENSGALG00010011352) #33	MGAT4C (ENSGALG00010011370) #34
Anura	ANCESTRAL SPECIES		ENSGT00940000155834	ENSGT00940000162446	ENSGT00940000164439	ENSGT00940000154098.a	ENSGT00730000111360	ENSGT00390000008708	ENSGT00940000157255	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00660000096975	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000167105	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00950000182956.b.b.a.a.c.a
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000016337	ENSLLEG00000016597	ENSLLEG00000016633	ENSLLEG00000016847	NUAK1 (ENSLLEG00000017219)	AVPR1A (ENSLLEG00000017308)	PPM1H (ENSLLEG00000017365)	ENSLLEG00000017515	MON2 (ENSLLEG00000017568)	ENSLLEG00000018351	ENSLLEG00000018379	OTOGL (ENSLLEG00000018482) #19	ENSLLEG00000019169	PTPRQ (ENSLLEG00000019234) #20	MYF6 (ENSLLEG00000020820) #21	MYF5 (ENSLLEG00000020856) #22	LIN7A (ENSLLEG00000020908) #23	ENSLLEG00000021060	ACSS3 (ENSLLEG00000021119) #24	ENSLLEG00000021608	PPFIA2 (ENSLLEG00000021708) #25	ENSLLEG00000023610	CCDC59 (ENSLLEG00000023716) #26	METTL25 (ENSLLEG00000023763) #27	ENSLLEG00000024005	TMTC2 (ENSLLEG00000024034) #28	SLC6A15 (ENSLLEG00000024199) #29	ENSLLEG00000024506	ENSLLEG00000024610	ENSLLEG00000025376	ALX1 (ENSLLEG00000025405) #31
Frog	MODERN SPECIES	3	c12orf63 (ENSXETG00000045266)	nedd1 (ENSXETG00000021683)	ENSXETG00000034921	ENSXETG00000032908	tmpo (ENSXETG00000018759)	slc25a3 (ENSXETG00000018767)	ENSXETG00000045338	nuak1 (ENSXETG00000018772)	avpr1a (ENSXETG00000018781)	ppm1h (ENSXETG00000018793)	ptpn3 (ENSXETG00000018796)	rps16 (ENSXETG00000018809)	OTOGL (ENSXETG00000014502) #19	PTPRQ (ENSXETG00000030349) #20	myf6 (ENSXETG00000027340) #21	myf5 (ENSXETG00000014520) #22	lin7a (ENSXETG00000014525) #23	acss3 (ENSXETG00000014528) #24	ppfia2 (ENSXETG00000014532) #25	ccdc59 (ENSXETG00000014539) #26	mettl25 (ENSXETG00000014540) #27	ENSXETG00000047662	tmtc2 (ENSXETG00000021370) #28	ENSXETG00000042111	slc6a15 (ENSXETG00000021372) #29	lrriq1 (ENSXETG00000037765)	alx1 (ENSXETG00000021397) #31	rassf9 (ENSXETG00000011745) #32	nts (ENSXETG00000040562) #33	mgat4c (ENSXETG00000011744) #34	cep290 (ENSXETG00000011742) #37
Actinopterygii	ANCESTRAL SPECIES	17	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00660000096975	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000167105	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00500000044938 #36
Neopterygii	ANCESTRAL SPECIES	21	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00960000187527	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00660000096975	ENSGT00390000006546 #26	ENSGT00530000063745.b #27	ENSGT00940000156144 #28	ENSGT00940000157277 #29	ENSGT00940000167105	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #32	ENSGT00640000091574 #33	ENSGT00940000155352 #34	ENSGT00500000044938 #36
Osteoglossocephalai	ANCESTRAL SPECIES	48	ENSGT00940000163632	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00390000002417 #8	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00940000158014 #14	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.k.b	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25
Osteoglossiformes	ANCESTRAL SPECIES	251	ENSGT00390000018775	ENSGT00940000165334	ENSGT00440000039564.b.a	ENSGT00940000153362.a.d #7	ENSGT00940000156622.a #9	ENSGT00530000063074.b.b.c #11	ENSGT00940000154980.db #12	ENSGT00940000157713.b #13	ENSGT00940000158014.a.b #14	ENSGT00390000000406.n #17	ENSGT00940000156120.a.a #18	ENSGT00390000013067.l	ENSGT00940000160698 #19	ENSGT00940000167492.i	ENSGT00950000182959.a.b.b.a.k #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.`b #25
P. kingsleyae	MODERN SPECIES	330								ENSPKIG00000003485 #14	syt1a (ENSPKIG00000003538) #16	PAWR (ENSPKIG00000003600) #17	ppp1r12a (ENSPKIG00000003762) #18	rps16 (ENSPKIG00000004000)	OTOGL (ENSPKIG00000004061) #19	ENSPKIG00000004182	myf6 (ENSPKIG00000004248) #21	myf5 (ENSPKIG00000004272) #22	lin7a (ENSPKIG00000004317) #23	ACSS3 (ENSPKIG00000004377) #24	ppfia2 (ENSPKIG00000004590) #25
Asian bonytongue	MODERN SPECIES	16	krr1 (ENSSFOG00015031941)	phlda1 (ENSSFOG00015033220)	nap1l1 (ENSSFOG00015018510) #7	OSBPL8 (ENSSFOG00015018553) #9	zdhhc17 (ENSSFOG00015018700) #11	csrp2 (ENSSFOG00015018779) #12	nav3 (ENSSFOG00015018832) #14	ENSSFOG00015018791	syt1a (ENSSFOG00015031929) #16	PAWR (ENSSFOG00015019109) #17	ppp1r12a (ENSSFOG00015019159) #18	rps16 (ENSSFOG00015019382)	OTOGL (ENSSFOG00015019419) #19	ENSSFOG00015019468	myf6 (ENSSFOG00015019606) #21	myf5 (ENSSFOG00015019621) #22	lin7a (ENSSFOG00015019629) #23	ACSS3 (ENSSFOG00015019639) #24	ppfia2 (ENSSFOG00015019713) #25	TMTC2 (ENSSFOG00015019839) #28	ENSSFOG00015029516	IQSEC3 (ENSSFOG00015019895)	ENSSFOG00015019921	ddx11 (ENSSFOG00015019931)	fkbp4 (ENSSFOG00015019964)	ENSSFOG00015019985	ENSSFOG00015020008	ENSSFOG00015020016	tnni1c (ENSSFOG00015020045)	c2cd5 (ENSSFOG00015020202)	st8sia1 (ENSSFOG00015020372)
Clupeocephala	ANCESTRAL SPECIES	188	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00510000047886.b	ENSGT00940000171263	ENSGT00940000158014 #14	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.k.a	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h
Otomorpha	ANCESTRAL SPECIES	204	ENSGT00940000156038.b	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00510000047886.b	ENSGT00940000158014 #14	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.k.a	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h
Clupeiformes	ANCESTRAL SPECIES	62	ENSGT00940000156038.b	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00510000047886.b	ENSGT00940000158014 #14	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.k.a	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000172289	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00940000159750	ENSGT00940000154814.b	ENSGT00940000156403.b	ENSGT00950000182937.B.b
Denticle herring	MODERN SPECIES	6	OSBPL8 (ENSDCDG00000022762) #9	zdhhc17 (ENSDCDG00000026306) #11	csrp2 (ENSDCDG00000026322) #12	e2f7 (ENSDCDG00000026324) #13	ENSDCDG00000026325	ENSDCDG00000026326	ENSDCDG00000026328	ENSDCDG00000026331	nav3 (ENSDCDG00000026354) #14	syt1a (ENSDCDG00000027575) #16	ENSDCDG00000027582	pawr (ENSDCDG00000027583) #17	ppp1r12a (ENSDCDG00000027584) #18	rps16 (ENSDCDG00000027593)	myf6 (ENSDCDG00000027598) #21	myf5 (ENSDCDG00000027600) #22	lin7a (ENSDCDG00000027602) #23	ACSS3 (ENSDCDG00000027609) #24	ppfia2 (ENSDCDG00000027692) #25	ENSDCDG00000030343	llph (ENSDCDG00000030344)	hcls1 (ENSDCDG00000030354)	ENSDCDG00000030434	guca1a (ENSDCDG00000030436)	orc5 (ENSDCDG00000030439)	lhfpl3 (ENSDCDG00000030443)	DNAH6 (ENSDCDG00000030470)	ENSDCDG00000030792	si:cabz01085950.1 (ENSDCDG00000030919)	PTPRO (ENSDCDG00000030969)	eps8a (ENSDCDG00000032073)
Atlantic herring	MODERN SPECIES	7	bmpr2a (ENSCHAG00000004641)	ENSCHAG00000005504	slc15a1b (ENSCHAG00000011257)	ENSCHAG00000011604	nr4a2b (ENSCHAG00000011794)	gpd2 (ENSCHAG00000011812)	ENSCHAG00000012171	optn (ENSCHAG00000012181)	ccdc3a (ENSCHAG00000012193)	camk1da (ENSCHAG00000012217)	cdc123 (ENSCHAG00000012817)	ENSCHAG00000012859	TIMM22 (ENSCHAG00000012880)	ENSCHAG00000012890	myf6 (ENSCHAG00000012902) #21	myf5 (ENSCHAG00000012907) #22	lin7a (ENSCHAG00000012925) #23	ACSS3 (ENSCHAG00000012966) #24	ENSCHAG00000013958	ENSCHAG00000013985	ppfia2 (ENSCHAG00000014083) #25	ENSCHAG00000017004	ENSCHAG00000017023	ENSCHAG00000017045	NUAK1 (ENSCHAG00000017150)	prl2 (ENSCHAG00000017173)	MID1 (ENSCHAG00000017268)	ARHGAP6 (ENSCHAG00000017388)	MSL3 (ENSCHAG00000017515)	ENSCHAG00000017610	PRPS2 (ENSCHAG00000017630)
Otophysi	ANCESTRAL SPECIES	40	ENSGT00390000018775	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000157713 #13	ENSGT00510000047886.b	ENSGT00940000158014 #14	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.b.b.a
Characiphysae	ANCESTRAL SPECIES	67	ENSGT00390000010830	ENSGT00940000165853	ENSGT00390000018775	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a #7	ENSGT00940000156622 #9	ENSGT00530000063074.b.b #11	ENSGT00940000154980 #12	ENSGT00940000158014 #14	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a.l #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00990000204681	ENSGT00940000158039.h	ENSGT00940000159379	ENSGT00940000153372.A.f
Characiphysae_b	ANCESTRAL SPECIES	161										ENSGT00940000158014 #14	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a.l #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.b.b.a
Characoidei	ANCESTRAL SPECIES	182										ENSGT00940000158014 #14	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a.l #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.b.b.a
Mexicana tetra	MODERN SPECIES	22	ost4 (ENSAMXG00000025270)	ENSAMXG00000043766	agbl5 (ENSAMXG00000001121)	tmem214 (ENSAMXG00000001600)	ENSAMXG00000030619	ENSAMXG00000036395	ENSAMXG00000039430	ENSAMXG00000036999	nav3 (ENSAMXG00000016811) #14	ENSAMXG00000036051	syt1a (ENSAMXG00000000351) #16	pawr (ENSAMXG00000039462) #17	ppp1r12a (ENSAMXG00000000386) #18	rps16 (ENSAMXG00000033866)	myf6 (ENSAMXG00000000425) #21	myf5 (ENSAMXG00000000428) #22	LIN7B (ENSAMXG00000035915) ##23	ppfia2 (ENSAMXG00000006001) #25	llph (ENSAMXG00000030053)	hcls1 (ENSAMXG00000006045)	ENSAMXG00000006063	guca1a (ENSAMXG00000006082)	orc5 (ENSAMXG00000006161)	ENSAMXG00000037520	lhfpl3 (ENSAMXG00000032533)	ENSAMXG00000031350	ENSAMXG00000037828	ndufb2 (ENSAMXG00000006366)	KDM7A (ENSAMXG00000006392)	ENSAMXG00000041110	SEMA3C (ENSAMXG00000006459)
Red-bellied piranha	MODERN SPECIES	150					ENSPNAG00000012785	ENSPNAG00000012773	nav3 (ENSPNAG00000002385) #14	syt1a (ENSPNAG00000012718) #16	ENSPNAG00000012666	pawr (ENSPNAG00000012658) #17	ppp1r12a (ENSPNAG00000012652) #18	ENSPNAG00000012615	rps16 (ENSPNAG00000002321)	ENSPNAG00000012596	myf6 (ENSPNAG00000012583) #21	myf5 (ENSPNAG00000007179) #22	lin7a (ENSPNAG00000012563) #23	ACSS3 (ENSPNAG00000002283) #24	ppfia2 (ENSPNAG00000006898) #25	ENSPNAG00000002170
Electric eel	MODERN SPECIES	309									ENSEEEG00000014336 #14	ENSEEEG00000014337	syt1a (ENSEEEG00000014338) #16	pawr (ENSEEEG00000014348) #17	ppp1r12a (ENSEEEG00000014354) #18	rps16 (ENSEEEG00000014359)	myf6 (ENSEEEG00000014363) #21	myf5 (ENSEEEG00000014364) #22
Channel catfish	MODERN SPECIES	10	cmah (ENSIPUG00000024591)	ENSIPUG00000024585	krr1 (ENSIPUG00000024581)	phlda1 (ENSIPUG00000024577)	nap1l1 (ENSIPUG00000024567) #7	OSBPL8 (ENSIPUG00000024546) #9	ZDHHC17 (ENSIPUG00000024530) #11	si:dkey-97m3.1 (ENSIPUG00000024524)	ENSIPUG00000024522	nav3 (ENSIPUG00000024518) #14	SYT1 (ENSIPUG00000024511) #16	ENSIPUG00000024510 #18	pawr (ENSIPUG00000024509) #17	ppp1r12a (ENSIPUG00000024502) #18	rps16 (ENSIPUG00000024494)	myf6 (ENSIPUG00000024490) #22	lin7a (ENSIPUG00000024459) #23	acss3 (ENSIPUG00000024454) #24	ppfia2 (ENSIPUG00000024451) #25	llph (ENSIPUG00000024449)	mdm2 (ENSIPUG00000024445)	slc35e3 (ENSIPUG00000024440)	ENSIPUG00000024351	magi2a (ENSIPUG00000024345)	ENSIPUG00000024341	Gnai1 (ENSIPUG00000024333)	CD36 (ENSIPUG00000024330)	SEMA3C (ENSIPUG00000024327)	ENSIPUG00000024237	ENSIPUG00000024236	ENSIPUG00000024234
Cyprinoidei	ANCESTRAL SPECIES	67									ENSGT00510000047886.b.ib	ENSGT00940000158014 #14	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.b.b.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	94	ENSGT00940000153544.b.f	ENSGT00940000157572.a.a.b	ENSGT00940000155997.lb.a.lb.a	ENSGT00940000158409.ab	ENSGT00940000156127.t	ENSGT00390000017990.a	ENSGT00950000182839.B.a.a.k.a ##32	ENSGT00390000002793.d	ENSGT00510000047886.b.ib.a	ENSGT00940000158014.m #14	ENSGT00940000155394.i.a.a #16	ENSGT00390000000406.k #17	ENSGT00940000156120.a.i #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a.j #21	ENSGT00950000182959.a.a.a #22	ENSGT00940000153222.a.a.y #23	ENSGT00940000157479.j #24	ENSGT01050000244900.a.a.a.a.b.bb.m.b #25	ENSGT00940000165344.e	ENSGT00940000158997.k.b	ENSGT00730000111007.a.a.i	ENSGT00940000164333.d	ENSGT00390000009380.a	ENSGT00990000203541.a.a.a.a.a.e.a	ENSGT00940000157862.i	ENSGT00390000004044.b	ENSGT00940000158039.h.b	ENSGT00940000159379.f	ENSGT00940000153372.A.f.k	ENSGT00940000153567.a.a.b.b.a.a
Goldfish	MODERN SPECIES	21	kiss2 (ENSCARG00000050789)	ldhba (ENSCARG00000050805)	slc25a3a (ENSCARG00000004095)	tmpoa (ENSCARG00000004118)	strap (ENSCARG00000004172)	ETNK1 (ENSCARG00000004230)	sox5 (ENSCARG00000004446)	dnai7 (ENSCARG00000007038)	lrmp (ENSCARG00000007098)	bcat1 (ENSCARG00000007169)	syt1a (ENSCARG00000007182) #16	pawr (ENSCARG00000007222) #17	ppp1r12a (ENSCARG00000007240) #18	RPS16 (ENSCARG00000007629)	myf6 (ENSCARG00000007640) #21	myf5 (ENSCARG00000007648) #22	lin7a (ENSCARG00000007657) #23	ACSS3 (ENSCARG00000007733) #24	ppfia2 (ENSCARG00000008457) #25	llph (ENSCARG00000011062)	hcls1 (ENSCARG00000011091)	GOLGB1 (ENSCARG00000011371)	guca1a (ENSCARG00000011420)	orc5 (ENSCARG00000011442)	lhfpl3 (ENSCARG00000011623)	ENSCARG00000011636	ndufb2 (ENSCARG00000011648)	KDM7A (ENSCARG00000011660)	SEMA3C (ENSCARG00000011766)	cd36 (ENSCARG00000012095)	gnai1 (ENSCARG00000012213)
Cyprininae_a	ANCESTRAL SPECIES	174											ENSGT00940000158014.n #14	ENSGT00940000155394.i.a.b #16	ENSGT00390000000406.l #17	ENSGT00940000156120.a.j #18	ENSGT00950000182959.a.b.b.a.j.b #21	ENSGT00950000182959.a.a.a #22	ENSGT00950000182959.a.b.b.a.i #21	ENSGT00950000182959.a.a.b #22	ENSGT00940000153222.a.a.y #23	ENSGT00940000157479.j #24	ENSGT01050000244900.a.a.a.a.b.bb.m.b #25	ENSGT00940000165344.e	ENSGT00940000158997.k.b	ENSGT00730000111007.a.a.i	ENSGT00940000164333.d	ENSGT00390000009380.a	ENSGT00990000203541.a.a.a.a.a.e.a	ENSGT00940000157862.i	ENSGT00390000004044.b	ENSGT00940000158039.h.b	ENSGT00940000159379.f
Common carp reference	MODERN SPECIES	36	cacna1c (ENSCCRG00000079889)	ENSCCRG00000064902 ##32	ENSCCRG00000076072	ENSCCRG00000024630	ENSCCRG00000025696	ENSCCRG00000038194	ENSCCRG00000003610	ENSCCRG00000082448	ENSCCRG00000075007	nav3 (ENSCCRG00000003878) #14	syt1a (ENSCCRG00000060462) #16	pawr (ENSCCRG00000017856) #17	ppp1r12a (ENSCCRG00000031966) #18	ENSCCRG00000031955	myf6 (ENSCCRG00000052812) #21	myf5 (ENSCCRG00000031947) #22	ENSCCRG00000002290	lin7a (ENSCCRG00000070932) #23	ACSS3 (ENSCCRG00000072702) #24	ppfia2 (ENSCCRG00000070855) #25	llph (ENSCCRG00000057054)	hcls1 (ENSCCRG00000001201)	ENSCCRG00000001214	guca1a (ENSCCRG00000070485)	lhfpl3 (ENSCCRG00000058495)	orc5 (ENSCCRG00000001236)	ENSCCRG00000039177	ndufb2 (ENSCCRG00000072248)	ENSCCRG00000035796	ENSCCRG00000033639	gnai1 (ENSCCRG00000033760)
Golden-line barbel	MODERN SPECIES	7	ENSSGRG00000041165	stk38l (ENSSGRG00000041187)	LRTM2 (ENSSGRG00000041682)	dcp1b (ENSSGRG00000041683)	cacna1c (ENSSGRG00000041723)	ENSSGRG00000041780	napepld (ENSSGRG00000041781)	rassf8b (ENSSGRG00000041783) ##32	ints13 (ENSSGRG00000041790)	ENSSGRG00000041934	nav3 (ENSSGRG00000041936) #14	syt1a (ENSSGRG00000041938) #16	pawr (ENSSGRG00000041965) #17	ppp1r12a (ENSSGRG00000041970) #18	rps16 (ENSSGRG00000042013)	myf5 (ENSSGRG00000042014) #22	lin7a (ENSSGRG00000042025) #23	ACSS3 (ENSSGRG00000042041) #24	ppfia2 (ENSSGRG00000042069) #25	llph (ENSSGRG00000042864)	ENSSGRG00000042867	guca1a (ENSSGRG00000042871)	orc5 (ENSSGRG00000042873)	LHFPL3 (ENSSGRG00000042874)	ENSSGRG00000042875	ENSSGRG00000042879	ndufb2 (ENSSGRG00000042881)	ENSSGRG00000042882	SEMA3C (ENSSGRG00000042887)	cd36 (ENSSGRG00000043071)	gnai1 (ENSSGRG00000043151)
Cyprininae	ANCESTRAL SPECIES	481															ENSGT00950000182959.a.b.b.a.i #21	ENSGT00950000182959.a.a.b #22	ENSGT00940000153222.a.a.z #23	ENSGT00940000157479.i #24	ENSGT01050000244900.a.a.a.a.b.bb.n #25	ENSGT00940000165344.f	ENSGT00940000158997.k.a	ENSGT00730000111007.a.a.j	ENSGT00940000164333.c	ENSGT00390000009380.b	ENSGT00990000203541.a.a.a.a.a.f	ENSGT00990000203541.a.a.a.a.a.e.b	ENSGT00940000157862.j	ENSGT00390000004044.a	ENSGT00940000158039.h.a	ENSGT00940000159379.e	ENSGT00940000153372.A.f.l
Cyprininae_a	ANCESTRAL SPECIES	174									ENSGT00940000158014.n #14	ENSGT00940000155394.i.a.b #16	ENSGT00390000000406.l #17	ENSGT00940000156120.a.j #18	ENSGT00950000182959.a.b.b.a.j.b #21	ENSGT00950000182959.a.a.a #22	ENSGT00950000182959.a.b.b.a.i #21	ENSGT00950000182959.a.a.b #22	ENSGT00940000153222.a.a.y #23	ENSGT00940000157479.j #24	ENSGT01050000244900.a.a.a.a.b.bb.m.b #25	ENSGT00940000165344.e	ENSGT00940000158997.k.b	ENSGT00730000111007.a.a.i	ENSGT00940000164333.d	ENSGT00390000009380.a	ENSGT00990000203541.a.a.a.a.a.e.a	ENSGT00940000157862.i	ENSGT00390000004044.b	ENSGT00940000158039.h.b	ENSGT00940000159379.f	ENSGT00940000153372.A.f.k	ENSGT00940000153567.a.a.b.b.a.a
Golden-line barbel	MODERN SPECIES	717											nav3 (ENSSGRG00000014524) #14	syt1a (ENSSGRG00000015011) #16	pawr (ENSSGRG00000015136) #17	rps16 (ENSSGRG00000015151)	myf6 (ENSSGRG00000015176) #21	myf5 (ENSSGRG00000015178) #22	lin7a (ENSSGRG00000015179) #23	ACSS3 (ENSSGRG00000015180) #24
Goldfish	MODERN SPECIES	33	rassf8b (ENSCARG00000016908) ##32	ints13 (ENSCARG00000016844)	ENSCARG00000016831	ENSCARG00000016819	ENSCARG00000016808	ENSCARG00000016803	ENSCARG00000016796	ENSCARG00000016787	ENSCARG00000016739	nav3 (ENSCARG00000014159) #14	syt1a (ENSCARG00000014000) #16	pawr (ENSCARG00000013984) #17	ppp1r12a (ENSCARG00000013705) #18	rps16 (ENSCARG00000013649)	myf6 (ENSCARG00000013643) #21	myf5 (ENSCARG00000013638) #22	lin7a (ENSCARG00000013634) #23	ENSCARG00000013631	ENSCARG00000013627	ENSCARG00000013625	BRD1 (ENSCARG00000013600)	zbed4 (ENSCARG00000013589)	alg12 (ENSCARG00000013585)	creld2 (ENSCARG00000013490)	ENSCARG00000013472	ENSCARG00000013469	mdm2 (ENSCARG00000013438)	slc35e3 (ENSCARG00000013424)	magi2a (ENSCARG00000010141)	nup107 (ENSCARG00000008124)	gnai1 (ENSCARG00000007987)
Zebrafish	MODERN SPECIES	19	dcp1b (ENSDARG00000045484)	cacna1c (ENSDARG00000008398)	napepld (ENSDARG00000009252)	ints13 (ENSDARG00000011764)	rassf8b (ENSDARG00000045485) ##32	ENSDARG00000055245	ENSDARG00000114678	ENSDARG00000090038	ENSDARG00000090277	nav3 (ENSDARG00000005476) #14	syt1a (ENSDARG00000030614) #16	pawr (ENSDARG00000045486) #17	ppp1r12a (ENSDARG00000010784) #18	rps16 (ENSDARG00000045487)	myf6 (ENSDARG00000029830) #21	myf5 (ENSDARG00000007277) #22	lin7a (ENSDARG00000013414) #23	ACSS3 (ENSDARG00000032218) #24	ppfia2 (ENSDARG00000013000) #25	llph (ENSDARG00000055360)	hcls1 (ENSDARG00000012729)	ENSDARG00000061951	guca1a (ENSDARG00000010454)	orc5 (ENSDARG00000021579)	lhfpl3 (ENSDARG00000021595)	KMT2E (ENSDARG00000007523)	ndufb2 (ENSDARG00000045490)	kdm7aa (ENSDARG00000018111)	SEMA3C (ENSDARG00000034300)	cd36 (ENSDARG00000032639)	gnai1 (ENSDARG00000021647)
Euteleosteomorpha	ANCESTRAL SPECIES	30					ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00990000204681	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00530000063113.A.q	ENSGT00390000006367.c
Acanthomorphata	ANCESTRAL SPECIES	47	ENSGT00950000183052.b.c.b.a	ENSGT00940000158003	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.b.a.a
Euacanthomorphacea	ANCESTRAL SPECIES	18	ENSGT00940000159081	ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.a.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Percomorphaceae	ANCESTRAL SPECIES	19	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Percomorphaceae_B	ANCESTRAL SPECIES	21	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Percomorphaceae_C	ANCESTRAL SPECIES	22	ENSGT00940000172707.b	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Percomorphaceae_D	ANCESTRAL SPECIES	22	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Carangaria	ANCESTRAL SPECIES	22	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Pleuronectoidei	ANCESTRAL SPECIES	16	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT00940000155368	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Turbot	MODERN SPECIES	11	pmch (ENSSMAG00000022672)	igf1 (ENSSMAG00000005115)	ENSSMAG00000030625	ENSSMAG00000005081	btbd11a (ENSSMAG00000005012)	ENSSMAG00000004964	ENSSMAG00000005003	tnnt2c (ENSSMAG00000004942)	ENSSMAG00000004931	ENSSMAG00000004880	ENSSMAG00000004819	ENSSMAG00000004787 #16	ENSSMAG00000004775 #17	ENSSMAG00000032576	myf6 (ENSSMAG00000024612) #21	myf5 (ENSSMAG00000004563) #22	ENSSMAG00000004633 #18	lin7a (ENSSMAG00000004519) #23	ACSS3 (ENSSMAG00000004487) #24	ppfia2 (ENSSMAG00000004417) #25	ENSSMAG00000030237	ENSSMAG00000032625	ENSSMAG00000004385	rhno1 (ENSSMAG00000032963)	ENSSMAG00000004338	ENSSMAG00000004364	ENSSMAG00000004315	ptn (ENSSMAG00000004300)	chrm2a (ENSSMAG00000004285)	mtpn (ENSSMAG00000026919)	ENSSMAG00000004262
Tongue sole	MODERN SPECIES	18	klhl42 (ENSCSEG00000004627)	elapor2b (ENSCSEG00000004623)	tspan9b (ENSCSEG00000004608)	amdhd1 (ENSCSEG00000004613)	cry1a (ENSCSEG00000004597)	MTERF2 (ENSCSEG00000004606)	syt10 (ENSCSEG00000004582)	ENSCSEG00000004570	cyb5r3 (ENSCSEG00000004558)	syt1a (ENSCSEG00000004537) #16	pawr (ENSCSEG00000004529) #17	ppp1r12a (ENSCSEG00000004475) #18	rps16 (ENSCSEG00000004454)	rps16 (ENSCSEG00000004450)	myf6 (ENSCSEG00000004440) #21	myf5 (ENSCSEG00000004433) #22	lin7a (ENSCSEG00000004421) #23	ACSS3 (ENSCSEG00000004396) #24	TMEM19 (ENSCSEG00000004390)	kics2 (ENSCSEG00000004388)	srgap1b (ENSCSEG00000004374)	AVPR1A (ENSCSEG00000004367)	acot14 (ENSCSEG00000004355)	ENSCSEG00000004343	ENSCSEG00000004334	cwf19l1 (ENSCSEG00000004325)	dmtf1 (ENSCSEG00000004319)	tmem243b (ENSCSEG00000004311)	meig1 (ENSCSEG00000004307)	dclre1c (ENSCSEG00000004303)	cpm (ENSCSEG00000004301)
Carangaria_A	ANCESTRAL SPECIES	21	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Barramundi perch	MODERN SPECIES	34	hmgcrb (ENSLCAG00010003972)	CERT1 (ENSLCAG00010003603)	SV2C (ENSLCAG00010003544)	F2RL2 (ENSLCAG00010003542)	f2r2.1 (ENSLCAG00010003537)	f2rl1.1 (ENSLCAG00010003533)	f2rl1.2 (ENSLCAG00010003531)	ch25hl2 (ENSLCAG00010003527)	ENSLCAG00010003294	cyb5r3 (ENSLCAG00010003205)	syt1a (ENSLCAG00010003197) #16	pawr (ENSLCAG00010003184) #17	ppp1r12a (ENSLCAG00010003115) #18	rps16 (ENSLCAG00010003081)	myf6 (ENSLCAG00010003076) #21	myf5 (ENSLCAG00010003070) #22	lin7a (ENSLCAG00010003066) #23	ACSS3 (ENSLCAG00010003060) #24
Seriola	ANCESTRAL SPECIES	9	ENSGT00730000111164	ENSGT00390000012080	ENSGT00530000063539.b	ENSGT01020000230394.e.a.a.a.a.b	ENSGT00940000156680.b	ENSGT00990000203615.a.a.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b.c	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Yellowtail amberjack	MODERN SPECIES	2908								ENSSLDG00000019169	cyb5r3 (ENSSLDG00000019154)	syt1a (ENSSLDG00000019130) #16	pawr (ENSSLDG00000019114) #17	ENSSLDG00000019080 #18	ppp1r12a (ENSSLDG00000019041) #18	rps16 (ENSSLDG00000019014)	myf6 (ENSSLDG00000018996) #21	myf5 (ENSSLDG00000018969) #22	lin7a (ENSSLDG00000018950) #23	ACSS3 (ENSSLDG00000018882) #24	ppfia2 (ENSSLDG00000018811) #25	ENSSLDG00000018758	ENSSLDG00000018608	foxm1 (ENSSLDG00000018534)	rhno1 (ENSSLDG00000018518)	TULP3 (ENSSLDG00000018502)	ENSSLDG00000018485	ptn (ENSSLDG00000018471)	chrm2a (ENSSLDG00000018456)	mtpn (ENSSLDG00000018435)	ENSSLDG00000018423	ENSSLDG00000018412	SEMA3C (ENSSLDG00000018375)
Greater amberjack	MODERN SPECIES	60	UPF2 (ENSSDUG00000017244)	slc35e3 (ENSSDUG00000017364)	nup107 (ENSSDUG00000017402)	mdm2 (ENSSDUG00000017495)	plxnb2a.1 (ENSSDUG00000017517)	abcc9 (ENSSDUG00000017622)	kcnj8 (ENSSDUG00000017965)	syt10 (ENSSDUG00000018002)	ENSSDUG00000018031	cyb5r3 (ENSSDUG00000018106)	syt1a (ENSSDUG00000018131) #16	pawr (ENSSDUG00000018156) #17	ppp1r12a (ENSSDUG00000018184) #18	rps16 (ENSSDUG00000018274)	myf6 (ENSSDUG00000018309) #21	myf5 (ENSSDUG00000018287) #22	lin7a (ENSSDUG00000018320) #23	ACSS3 (ENSSDUG00000018359) #24	ppfia2 (ENSSDUG00000018476) #25	ENSSDUG00000018657	foxm1 (ENSSDUG00000018732)	rhno1 (ENSSDUG00000018757)	TULP3 (ENSSDUG00000018775)	ENSSDUG00000018796	ENSSDUG00000018819	ptn (ENSSDUG00000018862)	ENSSDUG00000018870	chrm2a (ENSSDUG00000018876)	mtpn (ENSSDUG00000018885)	ENSSDUG00000018905	ENSSDUG00000018914
Anabantaria	ANCESTRAL SPECIES	21	ENSGT00940000159081	ENSGT00940000163513	ENSGT00950000183169.A.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Zig-zag eel	MODERN SPECIES	15	pmch (ENSMAMG00000015727)	igf1 (ENSMAMG00000015704)	ENSMAMG00000015670	btbd11a (ENSMAMG00000015616)	ENSMAMG00000015580	tnnt2c (ENSMAMG00000015546)	ENSMAMG00000015509	ENSMAMG00000024270	ENSMAMG00000015433	ENSMAMG00000015393	ENSMAMG00000015373 #16	ENSMAMG00000015337 #17	ppp1r12a (ENSMAMG00000015240) #18	ENSMAMG00000015224	myf6 (ENSMAMG00000015217) #21	myf5 (ENSMAMG00000015202) #22	lin7a (ENSMAMG00000015174) #23	ACSS3 (ENSMAMG00000015114) #24	ppfia2 (ENSMAMG00000014966) #25	ENSMAMG00000014909	ENSMAMG00000014899	rhno1 (ENSMAMG00000014885)	ENSMAMG00000014877	ENSMAMG00000014845	ptn (ENSMAMG00000014825)	chrm2a (ENSMAMG00000025277)	mtpn (ENSMAMG00000014764)	ENSMAMG00000014753	ENSMAMG00000014716	ENSMAMG00000014241	ENSMAMG00000014171
Anabantoidei	ANCESTRAL SPECIES	21	ENSGT00940000159081	ENSGT00940000163513	ENSGT00950000183169.A.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000157779	ENSGT00940000158580	ENSGT01040000240400.c.a.b.a.a.d.a.b.b	ENSGT00940000155878	ENSGT00940000168658	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT01040000240400.c.a.b.a.a.d.a.b.a	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985
Climbing perch	MODERN SPECIES	14	igf1 (ENSATEG00000023026)	ENSATEG00000023044	ENSATEG00000029039	btbd11a (ENSATEG00000023064)	ENSATEG00000023083	tnnt2c (ENSATEG00000023096)	ENSATEG00000023107	ENSATEG00000026602	ENSATEG00000023121	ENSATEG00000023152	ENSATEG00000023170 #16	ENSATEG00000023210 #17	ENSATEG00000023226 #18	ENSATEG00000023236	myf6 (ENSATEG00000023242) #21	myf5 (ENSATEG00000023249) #22	lin7a (ENSATEG00000023252) #23	ACSS3 (ENSATEG00000023260) #24	ppfia2 (ENSATEG00000023284) #25	ENSATEG00000023298	ENSATEG00000025485	ENSATEG00000023308	ENSATEG00000023314	ENSATEG00000023329	ENSATEG00000023340	ENSATEG00000023343	ENSATEG00000029926	ENSATEG00000028577	ENSATEG00000023359	dyrk2 (ENSATEG00000023365)	ENSATEG00000023375
Siamese fighting fish	MODERN SPECIES	20	nup37 (ENSBSLG00000006190)	parpbp (ENSBSLG00000006209)	pmch (ENSBSLG00000006216)	igf1 (ENSBSLG00000006224)	ENSBSLG00000006232	btbd11a (ENSBSLG00000006250)	cry1a (ENSBSLG00000007173)	syt10 (ENSBSLG00000007302)	ENSBSLG00000007321	cyb5r3 (ENSBSLG00000007400)	syt1a (ENSBSLG00000007799) #16	pawr (ENSBSLG00000007919) #17	ppp1r12a (ENSBSLG00000007997) #18	rps16 (ENSBSLG00000008793)	myf6 (ENSBSLG00000008938) #21	myf5 (ENSBSLG00000008998) #22	LIN7B (ENSBSLG00000009073) ##23	ACSS3 (ENSBSLG00000009122) #24	ppfia2 (ENSBSLG00000009838) #25	dclre1c (ENSBSLG00000010562)	cpm (ENSBSLG00000010758)	ENSBSLG00000010788	TRHDE (ENSBSLG00000010858)	ENSBSLG00000011190	ENSBSLG00000011210	ENSBSLG00000011225	ENSBSLG00000011241	dyrk2 (ENSBSLG00000011249)	ENSBSLG00000011257	ENSBSLG00000011261	ENSBSLG00000011268
Eupercaria	ANCESTRAL SPECIES	21	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Tetraodontidae	ANCESTRAL SPECIES	17	ENSGT00390000006747	ENSGT00950000183117.a.a	ENSGT00940000158254	ENSGT00940000155067.b.a	ENSGT00940000155067.a	ENSGT00390000002730.e.b	ENSGT00950000183113.b.b.c.b	ENSGT00940000160161.e.a	ENSGT00940000153414.A	ENSGT00940000157821.h.a	ENSGT00940000160821	ENSGT00940000163946.a	ENSGT00940000155180.b.b	ENSGT00940000165907	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479.f #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00390000006367.c	ENSGT00940000155057.wb	ENSGT00940000153567.a.a.a	ENSGT00940000153372.A.f	ENSGT00940000159379	ENSGT00940000168487	ENSGT00940000158940.a	ENSGT00390000007640.a	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00940000158155	ENSGT00730000112347	ENSGT00940000158804
Fugu	MODERN SPECIES	9	gnptab (ENSTRUG00000012120)	chpt1 (ENSTRUG00000011969)	mybpc1 (ENSTRUG00000011461)	ENSTRUG00000031004	spic (ENSTRUG00000011424)	atp6v1e1b (ENSTRUG00000011314)	ADA2 (ENSTRUG00000011247)	GALNT8 (ENSTRUG00000011109)	rad51ap1 (ENSTRUG00000024004)	fgf6b (ENSTRUG00000011078)	fgf23 (ENSTRUG00000011062)	tigarb (ENSTRUG00000011015)	ccnd2b (ENSTRUG00000010895)	ENSTRUG00000010878	myf6 (ENSTRUG00000010842) #21	myf5 (ENSTRUG00000010781) #22	lin7a (ENSTRUG00000010674) #23	ACSS3 (ENSTRUG00000010633) #24	ppfia2 (ENSTRUG00000016246) #25	si:dkey-97m3.1 (ENSTRUG00000016219)	ENSTRUG00000016140	ENSTRUG00000016110	SEMA3C (ENSTRUG00000015957)	mtpn (ENSTRUG00000030378)	chrm2a (ENSTRUG00000020657)	ptn (ENSTRUG00000015924)	ENSTRUG00000015891	ENSTRUG00000029244	TULP3 (ENSTRUG00000015873)	rhno1 (ENSTRUG00000022380)	foxm1 (ENSTRUG00000015839)
Tetraodon	MODERN SPECIES	11	ENSTNIG00000011419	washc3 (ENSTNIG00000011417)	dram1 (ENSTNIG00000001389)	gnptab (ENSTNIG00000011416)	chpt1 (ENSTNIG00000011415)	mybpc1 (ENSTNIG00000011414)	spic (ENSTNIG00000000056)	atp6v1e1b (ENSTNIG00000011413)	ADA2 (ENSTNIG00000011412)	fgf6b (ENSTNIG00000011411)	fgf23 (ENSTNIG00000011410)	tigarb (ENSTNIG00000001586)	CCND2 (ENSTNIG00000011409)	ENSTNIG00000011408	myf6 (ENSTNIG00000011407) #21	myf5 (ENSTNIG00000011406) #22	LIN7B (ENSTNIG00000011405) ##23	ENSTNIG00000000595 #24	ppfia2 (ENSTNIG00000011404) #25	si:dkey-97m3.1 (ENSTNIG00000011403)	ENSTNIG00000011402	ENSTNIG00000011401	cd36 (ENSTNIG00000011400)	SEMA3C (ENSTNIG00000011399)	ENSTNIG00000011398	chrm2a (ENSTNIG00000011397)	ptn (ENSTNIG00000011396)	ENSTNIG00000002223	foxm1 (ENSTNIG00000011394)	ENSTNIG00000011393	ergic2 (ENSTNIG00000011392)
Eupecaria_A	ANCESTRAL SPECIES	21	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Ballan wrasse	MODERN SPECIES	288	ENSLBEG00000021449	ttll1 (ENSLBEG00000021464)	pacsin2 (ENSLBEG00000021510)	arfgap3 (ENSLBEG00000021563)	IKBIP (ENSLBEG00000021638)	ENSLBEG00000021657	tnnt2c (ENSLBEG00000021670)	syt10 (ENSLBEG00000021731)	ENSLBEG00000021784	cyb5r3 (ENSLBEG00000021856)	syt1a (ENSLBEG00000021895) #16	pawr (ENSLBEG00000021925) #17	ppp1r12a (ENSLBEG00000021962) #18	rps16 (ENSLBEG00000022009)	myf6 (ENSLBEG00000022039) #21	myf5 (ENSLBEG00000022115) #22	lin7a (ENSLBEG00000022140) #23	ACSS3 (ENSLBEG00000022189) #24
Eupecaria_B	ANCESTRAL SPECIES	21	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Perciformes	ANCESTRAL SPECIES	18	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Cottioidei	ANCESTRAL SPECIES	19	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT00980000202035	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Lumpfish	MODERN SPECIES	15	ENSCLMG00005010584	ENSCLMG00005022740	FUT9 (ENSCLMG00005022735)	tcp11l2 (ENSCLMG00005022733)	ppp1r12a (ENSCLMG00005022725) #18	pawr (ENSCLMG00005022721) #17	ENSCLMG00005022719	syt1a (ENSCLMG00005022718) #16	cyb5r3 (ENSCLMG00005022705)	ENSCLMG00005022685	ENSCLMG00005022678	syt10 (ENSCLMG00005022677)	tnnt2c (ENSCLMG00005022676)	rps16 (ENSCLMG00005022675)	myf6 (ENSCLMG00005022674) #21	myf5 (ENSCLMG00005022673) #22	lin7a (ENSCLMG00005022672) #23	ACSS3 (ENSCLMG00005022661) #24	ppfia2 (ENSCLMG00005022654) #25	ENSCLMG00005022642	foxm1 (ENSCLMG00005022640)	rhno1 (ENSCLMG00005022638)	TULP3 (ENSCLMG00005022637)	ENSCLMG00005022636	ENSCLMG00005022635	ptn (ENSCLMG00005022634)	chrm2a (ENSCLMG00005022632)	mtpn (ENSCLMG00005022629)	ENSCLMG00005022627	SEMA3C (ENSCLMG00005022619)	cd36 (ENSCLMG00005022530)
Perciformes_a	ANCESTRAL SPECIES	19	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Channel bull blenny	MODERN SPECIES	15	TMCC3 (ENSCGOG00000022948)	eri1 (ENSCGOG00000022952)	LAMB1 (ENSCGOG00000022966)	dclre1c (ENSCGOG00000023371)	meig1 (ENSCGOG00000023503)	tmem243b (ENSCGOG00000023504)	tnnt2c (ENSCGOG00000002697)	syt10 (ENSCGOG00000002710)	ENSCGOG00000002901	cyb5r3 (ENSCGOG00000005612)	syt1a (ENSCGOG00000005760) #16	pawr (ENSCGOG00000005900) #17	ppp1r12a (ENSCGOG00000005924) #18	rps16 (ENSCGOG00000006422)	myf6 (ENSCGOG00000006445) #21	myf5 (ENSCGOG00000006451) #22	lin7a (ENSCGOG00000006454) #23	ACSS3 (ENSCGOG00000006462) #24	ppfia2 (ENSCGOG00000006725) #25	ENSCGOG00000011470	foxm1 (ENSCGOG00000012088)	rhno1 (ENSCGOG00000012090)	TULP3 (ENSCGOG00000012093)	ENSCGOG00000012109	ptn (ENSCGOG00000012115)	chrm2a (ENSCGOG00000012120)	mtpn (ENSCGOG00000012123)	ENSCGOG00000012127	SEMA3C (ENSCGOG00000012145)	cd36 (ENSCGOG00000012920)	ENSCGOG00000013774
Pike perch	MODERN SPECIES	28	pmch (ENSSLUG00000005227)	IGF-I (ENSSLUG00000004805)	ENSSLUG00000004758	btbd11a (ENSSLUG00000004616)	cry1a (ENSSLUG00000003675)	MTERF2 (ENSSLUG00000003583)	syt10 (ENSSLUG00000003569)	ENSSLUG00000003558	ENSSLUG00000002793	cyb5r3 (ENSSLUG00000002598)	syt1a (ENSSLUG00000002503) #16	pawr (ENSSLUG00000002488) #17	ppp1r12a (ENSSLUG00000002356) #18	rps16 (ENSSLUG00000002321)	myf6 (ENSSLUG00000002312) #21	Myf5 (ENSSLUG00000002308) #22	lin7a (ENSSLUG00000002301) #23	ACSS3 (ENSSLUG00000001953) #24	ppfia2 (ENSSLUG00000001812) #25	ENSSLUG00000001721	washc3 (ENSSLUG00000001679)	dram1 (ENSSLUG00000001669)	gnptab (ENSSLUG00000001622)	chpt1 (ENSSLUG00000020879)	mybpc1 (ENSSLUG00000018517)	ENSSLUG00000018418	spic (ENSSLUG00000018413)	atp6v1e1b (ENSSLUG00000018403)	ADA2 (ENSSLUG00000018400)	GALNT8 (ENSSLUG00000018206)	rad51ap1 (ENSSLUG00000018171)
Eupecaria_C	ANCESTRAL SPECIES	18	ENSGT01100000263491.a.b.a.a.a.a.b.s.b	ENSGT00400000022326.b.a.b.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT00980000202035	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Gilthead seabream	MODERN SPECIES	5	pmch (ENSSAUG00010015234)	igf1 (ENSSAUG00010015109)	ENSSAUG00010015101	btbd11a (ENSSAUG00010014766)	cry1a (ENSSAUG00010012268)	ENSSAUG00010012243	tnnt2c (ENSSAUG00010012240)	syt10 (ENSSAUG00010012236)	ENSSAUG00010020501	cyb5r3 (ENSSAUG00010020421)	syt1a (ENSSAUG00010020377) #16	pawr (ENSSAUG00010020373) #17	ppp1r12a (ENSSAUG00010020166) #18	rps16 (ENSSAUG00010020153)	myf6 (ENSSAUG00010020152) #21	myf5 (ENSSAUG00010020150) #22	lin7a (ENSSAUG00010020149) #23	ACSS3 (ENSSAUG00010019831) #24	ppfia2 (ENSSAUG00010017685) #25	ENSSAUG00010017530	foxm1 (ENSSAUG00010017515)	rhno1 (ENSSAUG00010017512)	ENSSAUG00010017509	TULP3 (ENSSAUG00010017500)	ENSSAUG00010017491	ENSSAUG00010017488	ENSSAUG00010017483	ENSSAUG00010017479	ENSSAUG00010017476	ptn (ENSSAUG00010017470)	chrm2a (ENSSAUG00010017466)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	22	ENSGT01100000263491.a.b.a.a.a.a.b.s.b	ENSGT00400000022326.b.a.b.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Large yellow croaker	MODERN SPECIES	491	btbd11a (ENSLCRG00005017547)	cry1a (ENSLCRG00005017690)	MTERF2 (ENSLCRG00005017798)	tnnt2c (ENSLCRG00005017799)	syt10 (ENSLCRG00005017801)	ENSLCRG00005017806	cyb5r3 (ENSLCRG00005017871)	syt1a (ENSLCRG00005018056) #16	ENSLCRG00005018060	ENSLCRG00005018062	pawr (ENSLCRG00005018063) #17	ENSLCRG00005018065	ppp1r12a (ENSLCRG00005018071) #18	rps16 (ENSLCRG00005018085)	myf6 (ENSLCRG00005018091) #21	myf5 (ENSLCRG00005018093) #22	lin7a (ENSLCRG00005018096) #23	ACSS3 (ENSLCRG00005018098) #24	ppfia2 (ENSLCRG00005018255) #25	ENSLCRG00005019228	foxm1 (ENSLCRG00005019230)	rhno1 (ENSLCRG00005019231)	TULP3 (ENSLCRG00005019232)	ENSLCRG00005019233	ENSLCRG00005019241	eri1 (ENSLCRG00005019243)	dclre1c (ENSLCRG00005019246)	meig1 (ENSLCRG00005019249)	tmem243b (ENSLCRG00005010956)	ENSLCRG00005010957	ENSLCRG00005010958
European seabass	MODERN SPECIES	23	pah (ENSDLAG00005022732)	ENSDLAG00005022698	ENSDLAG00005027036	ENSDLAG00005022693	ENSDLAG00005022472	ENSDLAG00005022457	ENSDLAG00005022452	ENSDLAG00005022430	ENSDLAG00005022300	ENSDLAG00005022253	ENSDLAG00005022245 #16	PAWR (ENSDLAG00005022241) #17	ppp1r12a (ENSDLAG00005028115) #18	ENSDLAG00005022222	myf6 (ENSDLAG00005034355) #21	myf5 (ENSDLAG00005022213) #22	lin7a (ENSDLAG00005031546) #23	ACSS3 (ENSDLAG00005021975) #24	ppfia2 (ENSDLAG00005020955) #25	ENSDLAG00005020737	ENSDLAG00005020722	ENSDLAG00005020708	ENSDLAG00005028213	ptn (ENSDLAG00005020678)	chrm2a (ENSDLAG00005032814)	mtpn (ENSDLAG00005027317)	ENSDLAG00005026666	ENSDLAG00005020518	CD36 (ENSDLAG00005020211)	ENSDLAG00005020099	ENSDLAG00005019967
Ovalentaria	ANCESTRAL SPECIES	22	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Ovalentaria_B	ANCESTRAL SPECIES	23	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Pomacentridae	ANCESTRAL SPECIES	59	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00530000063817.b.b	ENSGT00940000155455.g	ENSGT00940000156419.b	ENSGT00940000154709.a.a	ENSGT00940000158899.bb.b	ENSGT00940000158899.cb	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Pomacentridae_A	ANCESTRAL SPECIES	58	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00530000063817.b.b	ENSGT00940000155455.g	ENSGT00940000156419.b	ENSGT00940000154709.a.a	ENSGT00940000158899.cb	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Amphiprion	ANCESTRAL SPECIES	19	ENSGT00940000168896	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00530000063817.b.b	ENSGT00940000155455.g	ENSGT00940000156419.b	ENSGT00940000154709.a.a	ENSGT00940000158899.cb	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Orange clownfish	MODERN SPECIES	13	ENSAPEG00000021659	igf1 (ENSAPEG00000021610)	ENSAPEG00000021575	ENSAPEG00000021556	cry1a (ENSAPEG00000021519)	btbd11a (ENSAPEG00000021482)	tnnt2c (ENSAPEG00000021437)	syt10 (ENSAPEG00000021420)	ENSAPEG00000021411	cyb5r3 (ENSAPEG00000021367)	syt1a (ENSAPEG00000021322) #16	pawr (ENSAPEG00000021309) #17	ppp1r12a (ENSAPEG00000021244) #18	rps16 (ENSAPEG00000021214)	myf6 (ENSAPEG00000021158) #21	myf5 (ENSAPEG00000021137) #22	lin7a (ENSAPEG00000021115) #23	ACSS3 (ENSAPEG00000021054) #24	ppfia2 (ENSAPEG00000020985) #25	ENSAPEG00000020865	foxm1 (ENSAPEG00000020793)	rhno1 (ENSAPEG00000020771)	TULP3 (ENSAPEG00000020752)	ENSAPEG00000020727	ENSAPEG00000020705	ptn (ENSAPEG00000020677)	chrm2a (ENSAPEG00000020661)	mtpn (ENSAPEG00000020630)	ENSAPEG00000020602	SEMA3C (ENSAPEG00000020577)	cd36 (ENSAPEG00000020487)
Spiny chromis	MODERN SPECIES	1975														rps16 (ENSAPOG00000018869)	myf6 (ENSAPOG00000018965) #21	myf5 (ENSAPOG00000018995) #22	lin7a (ENSAPOG00000019025) #23	ACSS3 (ENSAPOG00000019111) #24
Bicolor damselfish	MODERN SPECIES	310											syt1a (ENSSPAG00000007874) #16	pawr (ENSSPAG00000007892) #17	ppp1r12a (ENSSPAG00000007917) #18	rps16 (ENSSPAG00000008089)	myf6 (ENSSPAG00000008107) #21	myf5 (ENSSPAG00000008117) #22	lin7a (ENSSPAG00000008137) #23	ACSS3 (ENSSPAG00000008160) #24	ppfia2 (ENSSPAG00000008238) #25	ENSSPAG00000008316	foxm1 (ENSSPAG00000008351)	rhno1 (ENSSPAG00000008397)	TULP3 (ENSSPAG00000008407)	ENSSPAG00000008458	ENSSPAG00000008474	ptn (ENSSPAG00000008499)	chrm2a (ENSSPAG00000008507)
Cichlidae	ANCESTRAL SPECIES	24	ENSGT00940000159081	ENSGT00940000172707.b	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093.i	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	21	ENSGT00940000159081	ENSGT00940000172707.b	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093.i	ENSGT00940000158804.m	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	10	ENSGT00940000159081	ENSGT00940000172707.b	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093.i	ENSGT00940000158804.n	ENSGT00940000158804.m	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Haplochromini	ANCESTRAL SPECIES	9	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093.i	ENSGT00940000158804.n.b	ENSGT00940000158804.m	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Burton s mouthbrooder	MODERN SPECIES	326									ENSHBUG00000012255	cyb5r3 (ENSHBUG00000012236)	syt1a (ENSHBUG00000012192) #16	pawr (ENSHBUG00000012169) #17	ENSHBUG00000012146	rps16 (ENSHBUG00000011868)	myf6 (ENSHBUG00000011840) #21	myf5 (ENSHBUG00000011829) #22	lin7a (ENSHBUG00000000328) #23	ACSS3 (ENSHBUG00000011792) #24	ppfia2 (ENSHBUG00000011753) #25	ENSHBUG00000011518	foxm1 (ENSHBUG00000011509)	rhno1 (ENSHBUG00000011503)	foxm1 (ENSHBUG00000011493)	TULP3 (ENSHBUG00000011480)	ENSHBUG00000011412	ENSHBUG00000011400	ptn (ENSHBUG00000011360)	chrm2a (ENSHBUG00000011351)	mtpn (ENSHBUG00000011342)	ENSHBUG00000011331	SEMA3C (ENSHBUG00000011319)
Haplochromini_A	ANCESTRAL SPECIES	9	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093.i	ENSGT00940000158804.n.b	ENSGT00940000158804.m	ENSGT00730000112347	ENSGT00940000158155	ENSGT00940000155368.ab.a	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379
P. nyererei	MODERN SPECIES	399									ENSPNYG00000018682	cyb5r3 (ENSPNYG00000018648)	syt1a (ENSPNYG00000018615) #16	pawr (ENSPNYG00000018605) #17	ppp1r12a (ENSPNYG00000018399) #18	rps16 (ENSPNYG00000018328)	myf6 (ENSPNYG00000018314) #21	myf5 (ENSPNYG00000018301) #22	lin7a (ENSPNYG00000018284) #23	ACSS3 (ENSPNYG00000018233) #24	ppfia2 (ENSPNYG00000018167) #25	ENSPNYG00000018091	foxm1 (ENSPNYG00000018069)	rhno1 (ENSPNYG00000018048)	TULP3 (ENSPNYG00000018015)	ENSPNYG00000018003	ENSPNYG00000017991	ptn (ENSPNYG00000017983)	chrm2a (ENSPNYG00000017969)	mtpn (ENSPNYG00000017967)	ENSPNYG00000017958	SEMA3C (ENSPNYG00000017904)	cd36 (ENSPNYG00000017687)
Haplochromini_B	ANCESTRAL SPECIES	11	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000158804.n.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093.i	ENSGT00940000158804.n.b	ENSGT00940000158804.m	ENSGT00730000112347	ENSGT00940000158155	ENSGT00940000155368.ab.a	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379
Zebra mbuna	MODERN SPECIES	1099	pmch (ENSMZEG00005001251)	igf1 (ENSMZEG00005001284)	ENSMZEG00005001313	btbd11a (ENSMZEG00005001355)	cry1a (ENSMZEG00005001451)	MTERF2 (ENSMZEG00005001466)	syt10 (ENSMZEG00005001603)	ENSMZEG00005001628	cyb5r3 (ENSMZEG00005001636)	syt1a (ENSMZEG00005001660) #16	pawr (ENSMZEG00005001704) #17	ppp1r12a (ENSMZEG00005001744) #18	foxm1 (ENSMZEG00005001943)	rps16 (ENSMZEG00005001975)	myf6 (ENSMZEG00005001995) #21	myf5 (ENSMZEG00005002005) #22	lin7a (ENSMZEG00005002013) #23	ACSS3 (ENSMZEG00005002036) #24	ppfia2 (ENSMZEG00005002099) #25	ENSMZEG00005002179	foxm1 (ENSMZEG00005002229)	foxm1 (ENSMZEG00005002268)	rhno1 (ENSMZEG00005002308)	TULP3 (ENSMZEG00005002320)	ENSMZEG00005002354	ENSMZEG00005002378	opn5 (ENSMZEG00005002393)	ENSMZEG00005002407	cd2ap (ENSMZEG00005002420)	tnfrsf21 (ENSMZEG00005002452)	ENSMZEG00005002465
Eastern happy	MODERN SPECIES	8	pmch (ENSACLG00000016802)	igf1 (ENSACLG00000016815)	ENSACLG00000016841	btbd11a (ENSACLG00000016936)	cry1a (ENSACLG00000017110)	MTERF2 (ENSACLG00000017181)	syt10 (ENSACLG00000017353)	ENSACLG00000017416	cyb5r3 (ENSACLG00000017472)	syt1a (ENSACLG00000017513) #16	pawr (ENSACLG00000017548) #17	ppp1r12a (ENSACLG00000017614) #18	foxm1 (ENSACLG00000017856)	rps16 (ENSACLG00000017963)	myf6 (ENSACLG00000017983) #21	myf5 (ENSACLG00000017991) #22	lin7a (ENSACLG00000018011) #23	ACSS3 (ENSACLG00000018059) #24	ppfia2 (ENSACLG00000018429) #25	ENSACLG00000018723	foxm1 (ENSACLG00000018814)	foxm1 (ENSACLG00000018922)	rhno1 (ENSACLG00000018940)	TULP3 (ENSACLG00000018961)	ENSACLG00000019033	ENSACLG00000019049	ptn (ENSACLG00000019074)	chrm2a (ENSACLG00000019090)	mtpn (ENSACLG00000019115)	ENSACLG00000019126	SEMA3C (ENSACLG00000019139)
Lyretail cichlid	MODERN SPECIES	291	btbd11a (ENSNBRG00000010944)	ENSNBRG00000010937	MTERF2 (ENSNBRG00000010933)	cry1a (ENSNBRG00000010898)	tnnt2c (ENSNBRG00000010879)	syt10 (ENSNBRG00000010856)	ENSNBRG00000010848	ENSNBRG00000010794	cyb5r3 (ENSNBRG00000010756)	syt1a (ENSNBRG00000010739) #16	pawr (ENSNBRG00000010725) #17	ppp1r12a (ENSNBRG00000010670) #18	ENSNBRG00000010659	rps16 (ENSNBRG00000010637)	myf6 (ENSNBRG00000010629) #21	myf5 (ENSNBRG00000010621) #22	lin7a (ENSNBRG00000010602) #23	ENSNBRG00000010588	ACSS3 (ENSNBRG00000010540) #24	ppfia2 (ENSNBRG00000010460) #25	ENSNBRG00000010443	foxm1 (ENSNBRG00000010396)	ENSNBRG00000010385	TULP3 (ENSNBRG00000010353)	ENSNBRG00000010331	ENSNBRG00000010318	ptn (ENSNBRG00000010305)	chrm2a (ENSNBRG00000010300)	mtpn (ENSNBRG00000010292)	ENSNBRG00000010278	SEMA3C (ENSNBRG00000010236)
Nile tilapia	MODERN SPECIES	8	ENSONIG00000017799	btbd11a (ENSONIG00000017796)	cry1a (ENSONIG00000000075)	MTERF2 (ENSONIG00000020695)	tnnt2c (ENSONIG00000020696)	ENSONIG00000000001	syt10 (ENSONIG00000000002)	syt1a (ENSONIG00000000003) #16	pawr (ENSONIG00000028232) #17	ppp1r12a (ENSONIG00000000005) #18	foxm1 (ENSONIG00000027574)	foxm1 (ENSONIG00000000082)	ENSONIG00000031149	rps16 (ENSONIG00000000006)	myf6 (ENSONIG00000000007) #21	myf5 (ENSONIG00000038625) #22	lin7a (ENSONIG00000000078) #23	ACSS3 (ENSONIG00000000079) #24	ppfia2 (ENSONIG00000000080) #25	ENSONIG00000000081	foxm1 (ENSONIG00000042685)	rhno1 (ENSONIG00000000083)	TULP3 (ENSONIG00000000084)	ENSONIG00000030976	ENSONIG00000000085	ptn (ENSONIG00000000086)	chrm2a (ENSONIG00000020697)	ENSONIG00000030324	mtpn (ENSONIG00000041390)	ENSONIG00000000088	SEMA3C (ENSONIG00000000089)
Midas cichlid	MODERN SPECIES	1331												pawr (ENSACIG00000013438) #17	ppp1r12a (ENSACIG00000013397) #18	rps16 (ENSACIG00000013386)	myf6 (ENSACIG00000013331) #21	myf5 (ENSACIG00000013314) #22	lin7a (ENSACIG00000013298) #23	ACSS3 (ENSACIG00000013258) #24	ppfia2 (ENSACIG00000013195) #25	ENSACIG00000013105
Atherinomorphae	ANCESTRAL SPECIES	21	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Oryzias	ANCESTRAL SPECIES	20	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g.c	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a.d #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Oryzias_b	ANCESTRAL SPECIES	19	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g.c	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a.d #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Javanese ricefish	MODERN SPECIES	15	ENSOJAG00000023539	igf1 (ENSOJAG00000023545)	ENSOJAG00000023553	btbd11a (ENSOJAG00000023574)	ENSOJAG00000023593	ENSOJAG00000023595	cry1a (ENSOJAG00000023629)	MTERF2 (ENSOJAG00000023694)	syt10 (ENSOJAG00000023697)	ENSOJAG00000023700	syt1a (ENSOJAG00000023710) #16	pawr (ENSOJAG00000023718) #17	ppp1r12a (ENSOJAG00000023721) #18	rps16 (ENSOJAG00000023733)	myf6 (ENSOJAG00000023735) #21	myf5 (ENSOJAG00000023736) #22	lin7a (ENSOJAG00000023737) #23	ACSS3 (ENSOJAG00000023742) #24	ppfia2 (ENSOJAG00000023762) #25	foxm1 (ENSOJAG00000023805)	ENSOJAG00000023806	ENSOJAG00000023808	ENSOJAG00000023813	ptn (ENSOJAG00000023820)	chrm2a (ENSOJAG00000023822)	ENSOJAG00000023823	ENSOJAG00000023825	ENSOJAG00000014770	nup50 (ENSOJAG00000014777)	kiaa0930 (ENSOJAG00000014799)	fbxo7 (ENSOJAG00000014895)
Indian medaka	MODERN SPECIES	2	ENSOMEG00000003411	igf1 (ENSOMEG00000003424)	ENSOMEG00000003451	btbd11a (ENSOMEG00000003530)	cry1a (ENSOMEG00000003568)	ENSOMEG00000003581	tnnt2c (ENSOMEG00000003593)	syt10 (ENSOMEG00000003610)	ENSOMEG00000003669	cyb5r3 (ENSOMEG00000003698)	syt1a (ENSOMEG00000003714) #16	pawr (ENSOMEG00000003730) #17	ppp1r12a (ENSOMEG00000003801) #18	rps16 (ENSOMEG00000003840)	myf6 (ENSOMEG00000003855) #21	myf5 (ENSOMEG00000003862) #22	lin7a (ENSOMEG00000003884) #23	ACSS3 (ENSOMEG00000003964) #24	ppfia2 (ENSOMEG00000004094) #25	ENSOMEG00000004125	foxm1 (ENSOMEG00000004150)	ENSOMEG00000004155	TULP3 (ENSOMEG00000004185)	ENSOMEG00000004208	ptn (ENSOMEG00000000096)	chrm2a (ENSOMEG00000000098)	ENSOMEG00000004244	ENSOMEG00000004249	ENSOMEG00000004254	SEMA3C (ENSOMEG00000004303)	cd36 (ENSOMEG00000004403)
Oryzias_a	ANCESTRAL SPECIES	15	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g.c	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a.d #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.k.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	52												pawr (ENSOSIG00000003677) #17	ppp1r12a (ENSOSIG00000003628) #18	rps16 (ENSOSIG00000003413)	myf6 (ENSOSIG00000003401) #21	myf5 (ENSOSIG00000003391) #22	lin7a (ENSOSIG00000003379) #23	ACSS3 (ENSOSIG00000022239) #24	ppfia2 (ENSOSIG00000022032) #25	ENSOSIG00000021947	ENSOSIG00000021938	ptn (ENSOSIG00000021933)	chrm2a (ENSOSIG00000021926)	ENSOSIG00000021920	ENSOSIG00000021442	cd36 (ENSOSIG00000021399)	ENSOSIG00000021381	ENSOSIG00000021252	si:dkey-97m3.1 (ENSOSIG00000021193)	ergic2 (ENSOSIG00000021149)	KDM7A (ENSOSIG00000021128)
Chinese medaka	MODERN SPECIES	51	ENSOSIG00000008239	ENSOSIG00000008238	ENSOSIG00000008237	igf1 (ENSOSIG00000008154)	btbd11a (ENSOSIG00000008093)	cry1a (ENSOSIG00000007925)	MTERF2 (ENSOSIG00000007922)	tnnt2c (ENSOSIG00000007920)	syt10 (ENSOSIG00000007919)	ENSOSIG00000007916	ENSOSIG00000007911	syt1a (ENSOSIG00000007909) #16	pawr (ENSOSIG00000007906) #17	ppp1r12a (ENSOSIG00000007904) #18	myf6 (ENSOSIG00000007902) #21	myf5 (ENSOSIG00000007901) #22	lin7a (ENSOSIG00000007898) #23	ACSS3 (ENSOSIG00000007896) #24	RPS16 (ENSOSIG00000007851)	ppfia2 (ENSOSIG00000005522) #25	ENSOSIG00000005445	foxm1 (ENSOSIG00000005386)	ENSOSIG00000005383	ptn (ENSOSIG00000005378)	chrm2a (ENSOSIG00000005373)	ENSOSIG00000005369	SEMA3C (ENSOSIG00000005314)	cd36 (ENSOSIG00000005295)	ENSOSIG00000005228	ENSOSIG00000005174	si:dkey-97m3.1 (ENSOSIG00000005054)
Japanese Medaka HdrR	MODERN SPECIES	15	igf1 (ENSORLG00000016443)	ENSORLG00000027418	cox6b2 (ENSORLG00000016425)	btbd11a (ENSORLG00000016422)	ENSORLG00000016390	cry1a (ENSORLG00000016410)	tnnt2c (ENSORLG00000016386)	syt10 (ENSORLG00000016381)	ENSORLG00000016372	cyb5r3 (ENSORLG00000018656)	syt1a (ENSORLG00000016339) #16	pawr (ENSORLG00000026995) #17	ppp1r12a (ENSORLG00000016314) #18	rps16 (ENSORLG00000016271)	myf6 (ENSORLG00000016261) #21	myf5 (ENSORLG00000016257) #22	lin7a (ENSORLG00000030538) #23	ACSS3 (ENSORLG00000016249) #24	ppfia2 (ENSORLG00000016236) #25	ENSORLG00000016174	foxm1 (ENSORLG00000016140)	rhno1 (ENSORLG00000026209)	TULP3 (ENSORLG00000016129)	ENSORLG00000016118	ENSORLG00000024838	ptn (ENSORLG00000016099)	chrm2a (ENSORLG00000030214)	ENSORLG00000023855	ENSORLG00000029110	SEMA3C (ENSORLG00000016082)	cd36 (ENSORLG00000016066)
Cyprinodontiformes	ANCESTRAL SPECIES	19	ENSGT00940000168896	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Aplocheiloidei	ANCESTRAL SPECIES	14	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.a.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Mangrove rivulus	MODERN SPECIES	19	igf1 (ENSKMAG00000012960)	ENSKMAG00000012934	ENSKMAG00000012909	btbd11a (ENSKMAG00000012822)	cry1a (ENSKMAG00000012604)	tnnt2c (ENSKMAG00000012574)	syt10 (ENSKMAG00000012546)	ENSKMAG00000012499	cyb5r3 (ENSKMAG00000012463)	syt1a (ENSKMAG00000012419) #16	ENSKMAG00000012380	pawr (ENSKMAG00000012360) #17	ppp1r12a (ENSKMAG00000012279) #18	rps16 (ENSKMAG00000012230)	myf6 (ENSKMAG00000012210) #21	myf5 (ENSKMAG00000012199) #22	lin7a (ENSKMAG00000012178) #23	ACSS3 (ENSKMAG00000012129) #24	ppfia2 (ENSKMAG00000011901) #25	ENSKMAG00000011752	foxm1 (ENSKMAG00000011726)	rhno1 (ENSKMAG00000011710)	TULP3 (ENSKMAG00000011684)	ENSKMAG00000011655	ENSKMAG00000011642	ptn (ENSKMAG00000011624)	chrm2a (ENSKMAG00000011608)	ENSKMAG00000011593	ENSKMAG00000011574	SEMA3C (ENSKMAG00000011493)	cd36 (ENSKMAG00000011439)
Turquoise killifish	MODERN SPECIES	1610	cry1a (ENSNFUG00015018834)	tnnt2c (ENSNFUG00015018733)	SYT10 (ENSNFUG00015018728)	ENSNFUG00015018727	ENSNFUG00015018708	CYB5R3 (ENSNFUG00015018146)	SYT1A (ENSNFUG00015018114) #16	ENSNFUG00015018105	PAWR (ENSNFUG00015018098) #17	ppp1r12a (ENSNFUG00015018078) #18	ENSNFUG00015018069	RPS16 (ENSNFUG00015018063)	ENSNFUG00015018060	ENSNFUG00015018056	myf6 (ENSNFUG00015018050) #21	myf5 (ENSNFUG00015018047) #22	lin7a (ENSNFUG00015018040) #23	ENSNFUG00015018037	ACSS3 (ENSNFUG00015017298) #24	ENSNFUG00015017269	ppfia2 (ENSNFUG00015013697) #25	ENSNFUG00015013563	CU571169.1 (ENSNFUG00015012519)	foxm1 (ENSNFUG00015012456)	CU571169.5 (ENSNFUG00015012448)	TULP3 (ENSNFUG00015012432)	TRIM35 (ENSNFUG00015012422)	ptn (ENSNFUG00015012413)	CHRM2A (ENSNFUG00015012408)	ENSNFUG00015012405	ENSNFUG00015012400
Cyprinodontoidei	ANCESTRAL SPECIES	20	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00840000130048.b	ENSGT00940000162287.B.a.c	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Poeciliinae	ANCESTRAL SPECIES	19	ENSGT00940000162287.B.a.c	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Poecilia	ANCESTRAL SPECIES	29	ENSGT00940000162287.B.a.c	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
NAME_6	ANCESTRAL SPECIES	55	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT00940000155368.q	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Amazon molly	MODERN SPECIES	320	ENSPFOG00000017948	igf1 (ENSPFOG00000017930)	ENSPFOG00000017913	btbd11a (ENSPFOG00000017882)	ENSPFOG00000017877	cry1a (ENSPFOG00000017846)	tnnt2c (ENSPFOG00000020848)	syt10 (ENSPFOG00000017820)	ENSPFOG00000017778	cyb5r3 (ENSPFOG00000017742)	syt1a (ENSPFOG00000017713) #16	pawr (ENSPFOG00000017689) #17	ppp1r12a (ENSPFOG00000017528) #18	rps16 (ENSPFOG00000017508)	myf6 (ENSPFOG00000017498) #21	myf5 (ENSPFOG00000017488) #22	lin7a (ENSPFOG00000017480) #23	ACSS3 (ENSPFOG00000017417) #24	ppfia2 (ENSPFOG00000017112) #25	ENSPFOG00000022280 #25	ENSPFOG00000016986	foxm1 (ENSPFOG00000016962)	rhno1 (ENSPFOG00000016961)	TULP3 (ENSPFOG00000016911)	ENSPFOG00000016905	ENSPFOG00000016883	ptn (ENSPFOG00000016870)	chrm2a (ENSPFOG00000016867)	ENSPFOG00000016863	ENSPFOG00000016861	SEMA3C (ENSPFOG00000016799)
Sailfin molly	MODERN SPECIES	9										cyb5r3 (ENSPLAG00000011214)	syt1a (ENSPLAG00000011246) #16	pawr (ENSPLAG00000011257) #17	ppp1r12a (ENSPLAG00000011399) #18	rps16 (ENSPLAG00000011432)	myf6 (ENSPLAG00000011443) #21	myf5 (ENSPLAG00000011536) #22	lin7a (ENSPLAG00000011553) #23	ACSS3 (ENSPLAG00000011623) #24	ppfia2 (ENSPLAG00000011834) #25	ENSPLAG00000011929	foxm1 (ENSPLAG00000011940)	rhno1 (ENSPLAG00000011951)	TULP3 (ENSPLAG00000011999)	ENSPLAG00000012034	ENSPLAG00000012066	ptn (ENSPLAG00000012078)	chrm2a (ENSPLAG00000012100)	ENSPLAG00000012114	ENSPLAG00000012137
Guppy	MODERN SPECIES	454	snrpf (ENSPREG00000022635)	amdhd1 (ENSPREG00000022628)	tspan9b (ENSPREG00000022623)	ENSPREG00000022605	ENSPREG00000022592	cry1a (ENSPREG00000022582)	ENSPREG00000022576	syt10 (ENSPREG00000022565)	ENSPREG00000022557	cyb5r3 (ENSPREG00000022548)	syt1a (ENSPREG00000022536) #16	pawr (ENSPREG00000022522) #17	ppp1r12a (ENSPREG00000022493) #18	rps16 (ENSPREG00000022479)	myf6 (ENSPREG00000022475) #21	myf5 (ENSPREG00000022457) #22	lin7a (ENSPREG00000022447) #23	ACSS3 (ENSPREG00000022433) #24	ppfia2 (ENSPREG00000022413) #25	ENSPREG00000022397	foxm1 (ENSPREG00000022385)	rhno1 (ENSPREG00000022379)	TULP3 (ENSPREG00000022359)	ENSPREG00000022348	ENSPREG00000022336	ptn (ENSPREG00000022330)	chrm2a (ENSPREG00000022325)	ENSPREG00000022320	ENSPREG00000022313	SEMA3C (ENSPREG00000022300)	cd36 (ENSPREG00000022234)
Platyfish	MODERN SPECIES	8	ENSXMAG00000017362	igf1 (ENSXMAG00000028624)	ENSXMAG00000026515	ENSXMAG00000024762	btbd11a (ENSXMAG00000025507)	cyb5r3 (ENSXMAG00000017411)	ENSXMAG00000017426	syt10 (ENSXMAG00000017449)	ENSXMAG00000019615	cry1a (ENSXMAG00000017466)	syt1a (ENSXMAG00000017468) #16	pawr (ENSXMAG00000026362) #17	ppp1r12a (ENSXMAG00000017534) #18	rps16 (ENSXMAG00000030077)	myf6 (ENSXMAG00000017492) #21	myf5 (ENSXMAG00000017496) #22	lin7a (ENSXMAG00000026246) #23	ACSS3 (ENSXMAG00000017548) #24	ENSXMAG00000024730	ppfia2 (ENSXMAG00000027756) #25	ENSXMAG00000017594	foxm1 (ENSXMAG00000029688)	ENSXMAG00000024470	TULP3 (ENSXMAG00000017658)	ENSXMAG00000022584	ENSXMAG00000026341	ptn (ENSXMAG00000029793)	chrm2a (ENSXMAG00000017689)	ENSXMAG00000029537	mtpn (ENSXMAG00000004863)	ENSXMAG00000027095
NAME_4	ANCESTRAL SPECIES	16	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000162287.B.a.c	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a
Mummichog	MODERN SPECIES	2417									ENSFHEG00000021284	cyb5r3 (ENSFHEG00000021318)	syt1a (ENSFHEG00000021375) #16	pawr (ENSFHEG00000021387) #17	ppp1r12a (ENSFHEG00000021437) #18	rps16 (ENSFHEG00000021489)	myf6 (ENSFHEG00000021493) #21	myf5 (ENSFHEG00000021507) #22	lin7a (ENSFHEG00000021555) #23	ACSS3 (ENSFHEG00000021602) #24	ppfia2 (ENSFHEG00000021683) #25	ENSFHEG00000021695	foxm1 (ENSFHEG00000021721)	rhno1 (ENSFHEG00000021747)	ENSFHEG00000021764	ENSFHEG00000021805
Sheepshead minnow	MODERN SPECIES	119	ENSCVAG00000016009	igf1 (ENSCVAG00000016044)	ENSCVAG00000016092	ENSCVAG00000016098	btbd11a (ENSCVAG00000016113)	cry1a (ENSCVAG00000016128)	ENSCVAG00000016131	syt10 (ENSCVAG00000016202)	ENSCVAG00000016230	cyb5r3 (ENSCVAG00000016259)	syt1a (ENSCVAG00000016341) #16	pawr (ENSCVAG00000016350) #17	ppp1r12a (ENSCVAG00000016377) #18	rps16 (ENSCVAG00000016397)	myf6 (ENSCVAG00000016409) #21	myf5 (ENSCVAG00000016428) #22	lin7a (ENSCVAG00000016461) #23	ACSS3 (ENSCVAG00000016481) #24	ppfia2 (ENSCVAG00000016666) #25	ENSCVAG00000016685	foxm1 (ENSCVAG00000016692)	rhno1 (ENSCVAG00000016698)	ENSCVAG00000016726	ENSCVAG00000016742	ptn (ENSCVAG00000016747)	chrm2a (ENSCVAG00000016771)
Tiger tail seahorse	MODERN SPECIES	433	ccnd2b (ENSHCOG00000017500)	llph (ENSHCOG00000017511)	pex26 (ENSHCOG00000017529)	hcls1 (ENSHCOG00000017538)	ENSHCOG00000017542	guca1a (ENSHCOG00000000480)	orc5 (ENSHCOG00000017584)	lhfpl3 (ENSHCOG00000017594)	ENSHCOG00000017619	cyb5r3 (ENSHCOG00000017648)	syt1a (ENSHCOG00000017684) #16	pawr (ENSHCOG00000017688) #17	ppp1r12a (ENSHCOG00000017732) #18	rps16 (ENSHCOG00000017762)	myf6 (ENSHCOG00000017768) #21	myf5 (ENSHCOG00000017783) #22	lin7a (ENSHCOG00000017797) #23	ACSS3 (ENSHCOG00000017835) #24	ppfia2 (ENSHCOG00000017898) #25	ENSHCOG00000017941	foxm1 (ENSHCOG00000017947)	ENSHCOG00000017961	TULP3 (ENSHCOG00000017974)	ENSHCOG00000017982	ENSHCOG00000018040	syt10 (ENSHCOG00000018057)	tnnt2c (ENSHCOG00000018063)	cry1a (ENSHCOG00000018111)	btbd11a (ENSHCOG00000018163)	ENSHCOG00000018199	igf1 (ENSHCOG00000018270)
Pinecone sodierfish	MODERN SPECIES	15	ENSMMDG00005018912	btbd11a (ENSMMDG00005018917)	cry1a (ENSMMDG00005018951)	MTERF2 (ENSMMDG00005020073)	tnnt2c (ENSMMDG00005020074)	syt10 (ENSMMDG00005020079)	ENSMMDG00005020084	ENSMMDG00005020134	cyb5r3 (ENSMMDG00005020515)	syt1a (ENSMMDG00005020740) #16	pawr (ENSMMDG00005020744) #17	ppp1r12a (ENSMMDG00005020751) #18	rps16 (ENSMMDG00005020764)	ENSMMDG00005020765	myf6 (ENSMMDG00005020767) #21	myf5 (ENSMMDG00005020770) #22	lin7a (ENSMMDG00005020771) #23	ACSS3 (ENSMMDG00005020784) #24	ppfia2 (ENSMMDG00005021115) #25	ENSMMDG00005023019	foxm1 (ENSMMDG00005023025)	rhno1 (ENSMMDG00005023026)	TULP3 (ENSMMDG00005023029)	ENSMMDG00005023031	ptn (ENSMMDG00005023033)	chrm2a (ENSMMDG00005023036)	mtpn (ENSMMDG00005023039)	ENSMMDG00005023040	SEMA3C (ENSMMDG00005023044)	cd36 (ENSMMDG00005023059)	ENSMMDG00005023078
Cod	MODERN SPECIES	10	ENSGMOG00000001796	ENSGMOG00000033135	ENSGMOG00000025896	ENSGMOG00000028214	ENSGMOG00000033285	ENSGMOG00000020106	ENSGMOG00000025216	ENSGMOG00000028316	ENSGMOG00000022683	ENSGMOG00000024377	ENSGMOG00000033325	ENSGMOG00000025784	ENSGMOG00000029095	ENSGMOG00000028669	myf6 (ENSGMOG00000025107) #21	myf5 (ENSGMOG00000016963) #22	lin7a (ENSGMOG00000009243) #23	ACSS3 (ENSGMOG00000015350) #24	ppfia2 (ENSGMOG00000015273) #25	ENSGMOG00000028792	ENSGMOG00000026403	ENSGMOG00000012976	ENSGMOG00000033609	ENSGMOG00000010827	ENSGMOG00000010761	ENSGMOG00000035710	ENSGMOG00000019538	ENSGMOG00000030401	ENSGMOG00000014077	ENSGMOG00000013785	ENSGMOG00000026213
Protacanthopterygii	ANCESTRAL SPECIES	23	ENSGT00940000156334.a.b	ENSGT00390000005848	ENSGT00940000157275.a	ENSGT01030000234982	ENSGT00940000154649.A.r	ENSGT00400000022326.b.a.a	ENSGT00940000156120.a #18	ENSGT00390000000406 #17	ENSGT00940000155394.i.a #16	ENSGT00940000153962.b	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000158899	ENSGT00940000154709.a.a	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00530000063113.A.q	ENSGT00390000006367.c.w	ENSGT00940000155057.vb.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	90	ENSGT00400000022326.b.a.a.a	ENSGT00390000018272.j.b	ENSGT01100000263556.a.a.q.d.r	ENSGT00940000156120.a.g #18	ENSGT00940000164178.h.a.a.b	ENSGT00390000000406.i.b #17	ENSGT00940000155394.i.a.f #16	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.i	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a.f #22	ENSGT00950000182959.a.a.e #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479.c #24	ENSGT00940000157479.d #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344.d	ENSGT00940000158997.e.b	ENSGT00730000111007.a.a.l	ENSGT00940000165344.c	ENSGT00940000158997.f	ENSGT00730000111007.a.a.k.b	ENSGT00940000164333.e	ENSGT00390000009380.e.a	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044
Salmoninae_a	ANCESTRAL SPECIES	11	ENSGT00400000022326.b.a.a.a	ENSGT00390000018272.j.a	ENSGT01100000263549.k	ENSGT00940000167339	ENSGT01100000263556.a.a.q.d.r.a.b	ENSGT00940000156120.a.g #18	ENSGT00940000164178.h.a.a.b	ENSGT00390000000406.i.b #17	ENSGT00940000153962.b.e.a	ENSGT01050000244951.a.b.a.b.b.g	ENSGT01040000240385.A.b.b.a.b.a.a.a.b.b	ENSGT00940000158899.i.a	ENSGT00940000154709.a.a.f	ENSGT00940000164822.eb	ENSGT00390000013067.l.i	ENSGT00950000182959.a.a.e #22	ENSGT00940000153222.a.a.bb #23	ENSGT00940000157479.d #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344.d	ENSGT00940000158997.e.b	ENSGT00730000111007.a.a.l	ENSGT00940000164333.e	ENSGT00390000009380.e.a	ENSGT00990000203541.a.a.a.a.a	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.b	ENSGT00940000157862	ENSGT00390000004044.g	ENSGT00940000158039.h	ENSGT00530000063113.A.q.g	ENSGT00390000006367.c.w.a
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT01030000234589.h.f.b.b.a.a.a.b.b.b.a	ENSGT00940000175977	ENSGT01100000263549.k.a	ENSGT01100000263556.a.a.q.d.r.a.b.c.b	ENSGT00940000156120.a.g #18	ENSGT00940000164178.h.a.a.b	ENSGT00390000000406.i.b #17	ENSGT00940000153962.b.e.a	ENSGT01050000244951.a.b.a.b.b.g	ENSGT01040000240385.A.b.b.a.b.a.a.a.b.b	ENSGT00940000158899.i.a	ENSGT00940000154709.a.a.f	ENSGT00940000164822.eb	ENSGT00390000013067.l.i	ENSGT00950000182959.a.b.b.a.d #21	ENSGT00950000182959.a.a.e #22	ENSGT00940000153222.a.a.bb #23	ENSGT01050000244900.a.a.a.a.b.bb.i.b #25	ENSGT00940000165344.d.a	ENSGT00940000158997.e.b.b	ENSGT00730000111007.a.a.l.a	ENSGT00940000164333.e	ENSGT00390000009380.e.a	ENSGT00990000203541.a.a.a.a.a.l	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.b	ENSGT00940000157862.u.a	ENSGT00390000004044.g	ENSGT00940000158039.h.v	ENSGT00530000063113.A.q.g	ENSGT00390000006367.c.w.a	ENSGT00940000155057.vb.a.a
Oncorhynchus_a	ANCESTRAL SPECIES	64	ENSGT01090000260033.b.g.b.a.b.a.b.b.b.b.b	ENSGT01030000234589.h.f.b.b.a.a.a.b.b.b.a	ENSGT00940000175977	ENSGT01100000263549.k.a	ENSGT00940000156120.a.g #18	ENSGT00940000164178.h.a.a.b	ENSGT00390000000406.i.b #17	ENSGT00940000153962.b.e.a	ENSGT01050000244951.a.b.a.b.b.g	ENSGT01040000240385.A.b.b.a.b.a.a.a.b.b	ENSGT00940000158899.i.a	ENSGT00940000154709.a.a.f	ENSGT00940000164822.eb	ENSGT00390000013067.l.i	ENSGT00950000182959.a.b.b.a.d #21	ENSGT00950000182959.a.a.e #22	ENSGT00940000153222.a.a.bb #23	ENSGT01050000244900.a.a.a.a.b.bb.i.b #25	ENSGT00940000165344.d.a	ENSGT00940000158997.e.b.b	ENSGT00730000111007.a.a.l.a	ENSGT00940000164333.e	ENSGT00390000009380.e.a	ENSGT00990000203541.a.a.a.a.a.l	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.b	ENSGT00940000157862.u.a	ENSGT00390000004044.g	ENSGT00940000158039.h.v	ENSGT00530000063113.A.q.g.c	ENSGT00390000006367.c.w.a	ENSGT00940000155057.vb.a.a
Coho salmon	MODERN SPECIES	29	ENSOKIG00005012743	ENSOKIG00005012738	ppp1r12a (ENSOKIG00005012576) #18	ENSOKIG00005012494	PAWR (ENSOKIG00005012477) #17	syt1a (ENSOKIG00005012455) #16	cyb5r3 (ENSOKIG00005011252)	ENSOKIG00005011075	ENSOKIG00005011037	ENSOKIG00005011026	ENSOKIG00005011022	ENSOKIG00005010999	ENSOKIG00005010986	RPS16 (ENSOKIG00005010963)	myf6 (ENSOKIG00005010942) #21	myf5 (ENSOKIG00005010902) #22	lin7a (ENSOKIG00005010877) #23	ppfia2 (ENSOKIG00005007307) #25	llph (ENSOKIG00005007027)	hcls1 (ENSOKIG00005006199)	ENSOKIG00005006075	guca1a (ENSOKIG00005006054)	orc5 (ENSOKIG00005005916)	LHFPL3 (ENSOKIG00005005900)	ENSOKIG00005005890	ENSOKIG00005005876	ndufb2 (ENSOKIG00005005858)	ENSOKIG00005005773	ERGIC2 (ENSOKIG00005005657)	si:dkey-97m3.1 (ENSOKIG00005005611)	ENSOKIG00005005591
Chinook salmon	MODERN SPECIES	6	ENSOTSG00005006373	ENSOTSG00005006371	ENSOTSG00005006370	ENSOTSG00005006367	zgc:113263 (ENSOTSG00005006366)	ENSOTSG00005006364	cyb5r3 (ENSOTSG00005004729)	ENSOTSG00005004585	ENSOTSG00005004581	ENSOTSG00005004580	syt10 (ENSOTSG00005004578)	tnnt2c (ENSOTSG00005004568)	ENSOTSG00005004562	rps16 (ENSOTSG00005004561)	myf6 (ENSOTSG00005004560) #21	myf5 (ENSOTSG00005004458) #22	lin7a (ENSOTSG00005004455) #23	ENSOTSG00005004450	guca1a (ENSOTSG00005004448)	orc5 (ENSOTSG00005004419)	lhfpl3 (ENSOTSG00005004416)	ENSOTSG00005004414	ENSOTSG00005004413	ndufb2 (ENSOTSG00005004411)	KDM7A (ENSOTSG00005004384)	ergic2 (ENSOTSG00005004353)	si:dkey-97m3.1 (ENSOTSG00005004350)	ENSOTSG00005004348	ENSOTSG00005004346	ENSOTSG00005004345	cd36 (ENSOTSG00005004312)
Rainbow trout	MODERN SPECIES	13	ENSOMYG00000015882	ENSOMYG00000015860	ENSOMYG00000015664 #18	ENSOMYG00000015530	ENSOMYG00000015520 #17	ENSOMYG00000015469 #16	ENSOMYG00000015363	ENSOMYG00000015082	ENSOMYG00000014997	ENSOMYG00000014985	ENSOMYG00000014972	ENSOMYG00000014963	ENSOMYG00000014948	myf6 (ENSOMYG00000014934) #21	ENSOMYG00000074848	Myf5 (ENSOMYG00000014917) #22	lin7a (ENSOMYG00000014904) #23	ENSOMYG00000050420	ENSOMYG00000004734	ppfia2 (ENSOMYG00000014291) #25	llph (ENSOMYG00000013636)	hcls1 (ENSOMYG00000013975)	guca1a (ENSOMYG00000013888)	ENSOMYG00000013697	orc5 (ENSOMYG00000077068)	lhfpl3 (ENSOMYG00000013630)	ENSOMYG00000074943	ENSOMYG00000013624	ENSOMYG00000013553	ndufb2 (ENSOMYG00000013505)	ENSOMYG00000013418
Salmo	ANCESTRAL SPECIES	25	ENSGT01100000263549.k	ENSGT00940000167339.r	ENSGT01100000263556.a.a.q.d.r.a.b.b	ENSGT00940000156120.a.g #18	ENSGT00940000164178.h.a.a.b	ENSGT00390000000406.i.b #17	ENSGT00940000155394.i.a.f.b #16	ENSGT00940000153962.b.e.a	ENSGT01050000244951.a.b.a.b.b.g	ENSGT01040000240385.A.b.b.a.b.a.a.a.b.b	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.f	ENSGT00940000164822.eb.a	ENSGT00390000013067.l.i	ENSGT00950000182959.a.b.b.a.e #21	ENSGT00950000182959.a.a.e #22	ENSGT00940000153222.a.a.bb #23	ENSGT00940000157479.d #24	ENSGT01050000244900.a.a.a.a.b.bb.h #25	ENSGT00940000165344.c	ENSGT00940000158997.e.b	ENSGT00730000111007.a.a.k.b	ENSGT00940000164333.e	ENSGT00390000009380.e.a	ENSGT00990000203541.a.a.a.a.a.j	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.b	ENSGT00940000157862.s.b	ENSGT00940000158039.h.t	ENSGT01040000240385.A.a.b.b.f	ENSGT00940000157862.t	ENSGT00390000004044.h
River trout	MODERN SPECIES	38	ENSSTUG00000030624	ENSSTUG00000030613	ENSSTUG00000030667	ppp1r12a (ENSSTUG00000030696) #18	ENSSTUG00000030863	pawr (ENSSTUG00000030899) #17	syt1a (ENSSTUG00000030907) #16	cyb5r3 (ENSSTUG00000030947)	ENSSTUG00000031897	ENSSTUG00000032479	syt10 (ENSSTUG00000032485)	tnnt2c (ENSSTUG00000032501)	ENSSTUG00000032519	rps16 (ENSSTUG00000032534)	myf6 (ENSSTUG00000032558) #21	myf5 (ENSSTUG00000032573) #22	lin7a (ENSSTUG00000032580) #23	ACSS3 (ENSSTUG00000032599) #24	ppfia2 (ENSSTUG00000032738) #25	llph (ENSSTUG00000035187)	hcls1 (ENSSTUG00000035213)	ENSSTUG00000035760	guca1a (ENSSTUG00000035796)	orc5 (ENSSTUG00000035808)	lhfpl3 (ENSSTUG00000035854)	ENSSTUG00000035865	ENSSTUG00000035873	ndufb2 (ENSSTUG00000035879)	ENSSTUG00000035894	ergic2 (ENSSTUG00000036014)	si:dkey-97m3.1 (ENSSTUG00000036097)
Atlantic salmon	MODERN SPECIES	26	ENSSSAG00000048969	ENSSSAG00000049032 #18	ENSSSAG00000059264	ENSSSAG00000108147	ENSSSAG00000099338 #17	ENSSSAG00000092375 #16	ENSSSAG00000120466	ENSSSAG00000049921	ENSSSAG00000050368	ENSSSAG00000059783	ENSSSAG00000059802	ENSSSAG00000090411	ENSSSAG00000059832	ENSSSAG00000109892	myf6 (ENSSSAG00000059887) #21	myf5 (ENSSSAG00000006004) #22	lin7a (ENSSSAG00000086615) #23	ACSS3 (ENSSSAG00000060026) #24	ppfia2 (ENSSSAG00000060373) #25	llph (ENSSSAG00000064235)	hcls1 (ENSSSAG00000005879)	ENSSSAG00000064357	guca1a (ENSSSAG00000085222)	orc5 (ENSSSAG00000064371)	lhfpl3 (ENSSSAG00000082371)	ENSSSAG00000064417	ENSSSAG00000069201	ndufb2 (ENSSSAG00000116958)	ENSSSAG00000096353	ENSSSAG00000002755	ENSSSAG00000002786
Huchen	MODERN SPECIES	843							syt1a (ENSHHUG00000044047) #16	cyb5r3 (ENSHHUG00000044032)	ENSHHUG00000043992	ENSHHUG00000043988	syt10 (ENSHHUG00000043941)	tnnt2c (ENSHHUG00000043922)	ENSHHUG00000043915	rps16 (ENSHHUG00000043904)	myf6 (ENSHHUG00000043876) #21	myf5 (ENSHHUG00000043862) #22	lin7a (ENSHHUG00000043859) #23	ACSS3 (ENSHHUG00000043852) #24
Salmoninae	ANCESTRAL SPECIES	90	ENSGT00940000154649.A.r.b.b.a.b	ENSGT00400000022326.b.a.a.a	ENSGT00390000018272.j.b	ENSGT01100000263556.a.a.q.d.r	ENSGT00940000156120.a.g #18	ENSGT00940000164178.h.a.a.b	ENSGT00390000000406.i.b #17	ENSGT00940000155394.i.a.f #16	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.i	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a.f #22	ENSGT00950000182959.a.a.e #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479.c #24	ENSGT00940000157479.d #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344.d	ENSGT00940000158997.e.b	ENSGT00730000111007.a.a.l	ENSGT00940000165344.c	ENSGT00940000158997.f	ENSGT00730000111007.a.a.k.b	ENSGT00940000164333.e	ENSGT00390000009380.e.a	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862
Huchen	MODERN SPECIES	1610									syt1a (ENSHHUG00000041492) #16	cyb5r3 (ENSHHUG00000041465)	ENSHHUG00000041391	syt10 (ENSHHUG00000041360)	tnnt2c (ENSHHUG00000041347)	rps16 (ENSHHUG00000041325)	myf6 (ENSHHUG00000041254) #21	myf5 (ENSHHUG00000041246) #22
Salmoninae_a	ANCESTRAL SPECIES	167			ENSGT00940000154649.A.r.b.b.a.a	ENSGT00400000022326.b.a.a.b	ENSGT00530000063817.b.b	ENSGT00940000156120.a.h #18	ENSGT00940000164178.h.a.a.a	ENSGT00390000000406.i.a #17	ENSGT00940000155394.i.a.f #16	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a.f #22	ENSGT00940000153222.a.a.cb #23	ENSGT00940000157479.c #24
Oncorhynchus	ANCESTRAL SPECIES	22	ENSGT00940000167339	ENSGT01100000263556.a.a.q.d.r.a.b.d	ENSGT01100000263556.a.a.q.d.r.a.a	ENSGT01100000263556.a.a.q.d.r.a.b.c.a	ENSGT00530000063817.b.b	ENSGT00940000156120.a.h #18	ENSGT00940000164178.h.a.a.a	ENSGT00390000000406.i.a #17	ENSGT00940000155394.i.a.f #16	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a.c #21	ENSGT00950000182959.a.a.f #22	ENSGT00940000153222.a.a.cb #23	ENSGT00940000157479.c #24	ENSGT01050000244900.a.a.a.a.b.bb.i.a #25	ENSGT00940000165344.d.b	ENSGT00940000158997.e.b.a	ENSGT00730000111007.a.a.l.b	ENSGT00940000164333.f	ENSGT00390000009380.e.b	ENSGT00990000203541.a.a.a.a.a.k	ENSGT00940000157862.v	ENSGT00390000004044.h	ENSGT00940000158039.h.u	ENSGT00530000063113.A.q.h	ENSGT00390000006367.c.w.b	ENSGT00940000155057.vb.a.b
Oncorhynchus_a	ANCESTRAL SPECIES	31	ENSGT00940000167339	ENSGT01100000263556.a.a.q.d.r.a.b.d	ENSGT01100000263556.a.a.q.d.r.a.a	ENSGT01100000263556.a.a.q.d.r.a.b.c.a	ENSGT00530000063817.b.b	ENSGT00940000156120.a.h #18	ENSGT00940000164178.h.a.a.a	ENSGT00390000000406.i.a #17	ENSGT00940000155394.i.a.f #16	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a.c #21	ENSGT00950000182959.a.a.f #22	ENSGT00940000153222.a.a.cb #23	ENSGT00940000157479.c #24	ENSGT01050000244900.a.a.a.a.b.bb.i.a #25	ENSGT00940000165344.d.b	ENSGT00940000158997.e.a	ENSGT00940000158997.e.b.a	ENSGT00730000111007.a.a.l.b	ENSGT00940000164333.f	ENSGT00390000009380.e.b	ENSGT00990000203541.a.a.a.a.a.k	ENSGT00940000157862.v	ENSGT00390000004044.h	ENSGT00940000158039.h.u	ENSGT00530000063113.A.q.g.d	ENSGT00390000006367.c.w.b
Coho salmon	MODERN SPECIES	10	ENSOKIG00005044503	ENSOKIG00005044496	ENSOKIG00005044470	MTERF2 (ENSOKIG00005044462)	ENSOKIG00005044459	PPP1R12A (ENSOKIG00005044359) #18	ENSOKIG00005044330	pawr (ENSOKIG00005044327) #17	SYT1 (ENSOKIG00005044230) #16	CYB5R3 (ENSOKIG00005043270)	ENSOKIG00005042681	syt10 (ENSOKIG00005042620)	tnnt2c (ENSOKIG00005042597)	rps16 (ENSOKIG00005042520)	myf6 (ENSOKIG00005042479) #21	myf5 (ENSOKIG00005042418) #22	lin7a (ENSOKIG00005042387) #23	ACSS3 (ENSOKIG00005042154) #24	ppfia2 (ENSOKIG00005038115) #25	llph (ENSOKIG00005037949)	hcls1 (ENSOKIG00005037631)	ENSOKIG00005037557	guca1a (ENSOKIG00005037538)	orc5 (ENSOKIG00005037458)	lhfpl3 (ENSOKIG00005037430)	ENSOKIG00005037359	ndufb2 (ENSOKIG00005037334)	KDM7A (ENSOKIG00005037241)	ERGIC2 (ENSOKIG00005037145)	ENSOKIG00005037135	ENSOKIG00005037128
Chinook salmon	MODERN SPECIES	8	ENSOTSG00005010516	ENSOTSG00005010515	ENSOTSG00005010517	ENSOTSG00005010518	MTERF2 (ENSOTSG00005010519)	ppp1r12a (ENSOTSG00005010523) #18	ENSOTSG00005010529	pawr (ENSOTSG00005010530) #17	syt1a (ENSOTSG00005010532) #16	cyb5r3 (ENSOTSG00005010535)	ENSOTSG00005011764	syt10 (ENSOTSG00005018655)	tnnt2c (ENSOTSG00005018663)	rps16 (ENSOTSG00005018664)	myf6 (ENSOTSG00005018667) #21	myf5 (ENSOTSG00005018671) #22	lin7a (ENSOTSG00005018677) #23	ACSS3 (ENSOTSG00005018688) #24	ppfia2 (ENSOTSG00005020005) #25	ENSOTSG00005020012 #25	llph (ENSOTSG00005020013)	ENSOTSG00005020014	hcls1 (ENSOTSG00005020015)	ENSOTSG00005020017	guca1a (ENSOTSG00005034149)	orc5 (ENSOTSG00005034150)	lhfpl3 (ENSOTSG00005034151)	ENSOTSG00005034153	ndufb2 (ENSOTSG00005034155)	KDM7A (ENSOTSG00005034158)	ergic2 (ENSOTSG00005034161)
Rainbow trout	MODERN SPECIES	6	ENSOMYG00000006374	ENSOMYG00000006902 #18	ENSOMYG00000073880	ENSOMYG00000007180	ENSOMYG00000007233 #17	ENSOMYG00000007440 #16	ENSOMYG00000053625	ENSOMYG00000008300	ENSOMYG00000009103	ENSOMYG00000063310	ENSOMYG00000068663	ENSOMYG00000009238	ENSOMYG00000009249	ENSOMYG00000009357	myf6 (ENSOMYG00000009391) #21	myf5 (ENSOMYG00000009433) #22	lin7a (ENSOMYG00000009534) #23	ACSS3 (ENSOMYG00000009811) #24	ppfia2 (ENSOMYG00000010771) #25	llph (ENSOMYG00000012619)	hcls1 (ENSOMYG00000012684)	ENSOMYG00000012933	guca1a (ENSOMYG00000012949)	orc5 (ENSOMYG00000012964)	lhfpl3 (ENSOMYG00000012982)	ENSOMYG00000012992	ndufb2 (ENSOMYG00000013001)	ENSOMYG00000013028	ENSOMYG00000013055	ENSOMYG00000013061	ENSOMYG00000013071
Salmo	ANCESTRAL SPECIES	81			ENSGT01100000263556.a.a.q.d.r.a.a	ENSGT01100000263556.a.a.q.d.r.a.b.a	ENSGT00530000063817.b.b	ENSGT00940000156120.a.h #18	ENSGT00940000164178.h.a.a.a	ENSGT00390000000406.i.a #17	ENSGT00940000155394.i.a.f.a #16	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.a	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a.f #21	ENSGT00950000182959.a.a.f #22	ENSGT00940000153222.a.a.cb #23	ENSGT00940000157479.c #24	ENSGT01050000244900.a.a.a.a.b.bb.g #25	ENSGT00940000165344.d	ENSGT00940000158997.e.a.a	ENSGT00940000158997.e.a.b	ENSGT00730000111007.a.a.k.a	ENSGT00940000164333.f	ENSGT00390000009380.e.b	ENSGT00990000203541.a.a.a.a.a.i	ENSGT00940000157862.s.a	ENSGT00390000004044.g	ENSGT00940000158039.h.s	ENSGT00530000063113.A.q.h	ENSGT00390000006367.c.w.a.a
River trout	MODERN SPECIES	34	kitlgb (ENSSTUG00000027812)	ENSSTUG00000027803	ENSSTUG00000027792	ENSSTUG00000027774	ENSSTUG00000027757	ppp1r12a (ENSSTUG00000027550) #18	ENSSTUG00000027503	pawr (ENSSTUG00000027495) #17	syt1a (ENSSTUG00000027446) #16	cyb5r3 (ENSSTUG00000027246)	ENSSTUG00000026446	syt10 (ENSSTUG00000026383)	tnnt2c (ENSSTUG00000026330)	rps16 (ENSSTUG00000026299)	myf6 (ENSSTUG00000026265) #21	myf5 (ENSSTUG00000026178) #22	lin7a (ENSSTUG00000026114) #23	ENSSTUG00000026102	ACSS3 (ENSSTUG00000025813) #24	ppfia2 (ENSSTUG00000024089) #25	llph (ENSSTUG00000024017)	hcls1 (ENSSTUG00000023940)	ENSSTUG00000023891	guca1a (ENSSTUG00000023885)	orc5 (ENSSTUG00000023660)	lhfpl3 (ENSSTUG00000023639)	ENSSTUG00000023522	ndufb2 (ENSSTUG00000023507)	KDM7A (ENSSTUG00000023394)	ENSSTUG00000023386	ENSSTUG00000023379
Atlantic salmon	MODERN SPECIES	8	ENSSSAG00000059129	ENSSSAG00000059156	ENSSSAG00000059181	ENSSSAG00000059204 #18	ENSSSAG00000049822	ENSSSAG00000111955 #17	ENSSSAG00000059333 #16	ENSSSAG00000059420	ENSSSAG00000059732	ENSSSAG00000083937	ENSSSAG00000095543 #23	ENSSSAG00000113707	ENSSSAG00000089629	ENSSSAG00000066580	myf6 (ENSSSAG00000066608) #21	myf5 (ENSSSAG00000059922) #22	acss3 (ENSSSAG00000006095) #24	ENSSSAG00000092189	ppfia2 (ENSSSAG00000006415) #25	ENSSSAG00000006772	llph (ENSSSAG00000006778)	hcls1 (ENSSSAG00000064251)	ENSSSAG00000006792	guca1a (ENSSSAG00000121021)	orc5 (ENSSSAG00000006811)	lhfpl3 (ENSSSAG00000064408)	ENSSSAG00000002335	ENSSSAG00000006913	NDUB2 (ENSSSAG00000006908)	ENSSSAG00000006955	ENSSSAG00000007177
Northern pike	MODERN SPECIES	22	ENSELUG00000030654	ENSELUG00000028612	ENSELUG00000024788	ENSELUG00000028990	ENSELUG00000031374	kitlgb (ENSELUG00000002894)	ENSELUG00000002871	ppp1r12a (ENSELUG00000002794) #18	pawr (ENSELUG00000002637) #17	syt1a (ENSELUG00000002624) #16	cyb5r3 (ENSELUG00000001118)	ENSELUG00000002578	syt10 (ENSELUG00000002545)	tnnt2c (ENSELUG00000002535)	rps16 (ENSELUG00000002505)	myf5 (ENSELUG00000002500) #22	lin7a (ENSELUG00000002488) #23	ACSS3 (ENSELUG00000002474) #24	ppfia2 (ENSELUG00000002421) #25	llph (ENSELUG00000026094)	hcls1 (ENSELUG00000002347)	ENSELUG00000002315	guca1a (ENSELUG00000002288)	orc5 (ENSELUG00000002281)	lhfpl3 (ENSELUG00000002269)	ENSELUG00000028784	ENSELUG00000026586	ENSELUG00000002258	ndufb2 (ENSELUG00000002225)	KDM7A (ENSELUG00000002230)	ergic2 (ENSELUG00000002211)