Chordata	ANCESTRAL SPECIES																	ENSGT00950000182959 #22
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182959.a #22
Gnathostomata	DUPLICATION
Gnathostomata	ANCESTRAL SPECIES	283															ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31
Euteleostomi	ANCESTRAL SPECIES	16	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00660000096975	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000167105	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00500000044938 #37
Sarcopterygii	ANCESTRAL SPECIES	8	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00660000096975	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00500000044938 #37	ENSGT00730000111039.C	ENSGT00940000157538	ENSGT00390000018272
Tetrapoda	ANCESTRAL SPECIES	5	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00660000096975	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000167105	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Amniota	ANCESTRAL SPECIES	5	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Mammalia	ANCESTRAL SPECIES	8	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Theria	ANCESTRAL SPECIES	2	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Eutheria	ANCESTRAL SPECIES	1	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Boreoeutheria	ANCESTRAL SPECIES	6	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Euarchontoglires	ANCESTRAL SPECIES	6	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Glires	ANCESTRAL SPECIES	4	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Rodentia	ANCESTRAL SPECIES	5	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37	ENSGT00730000111039.C
Myomorpha	ANCESTRAL SPECIES	2	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Lesser Egyptian jerboa	MODERN SPECIES	42	Bbs10 (ENSJJAG00000023405) #7	Osbpl8 (ENSJJAG00000024252) #8	ENSJJAG00000011419 #9	ENSJJAG00000014135 #10	ENSJJAG00000005723 #11	E2f7 (ENSJJAG00000007878) #12	ENSJJAG00000010552 #13	Nav3 (ENSJJAG00000012332) #14	ENSJJAG00000022372 #15	Syt1 (ENSJJAG00000023399) #16	Pawr (ENSJJAG00000018666) #17	Ppp1r12a (ENSJJAG00000023796) #18	Otogl (ENSJJAG00000019493) #19	Ptprq (ENSJJAG00000017741) #20	Myf6 (ENSJJAG00000011250) #21	Myf5 (ENSJJAG00000003407) #22	Lin7a (ENSJJAG00000023503) #23	Acss3 (ENSJJAG00000008308) #24	Ppfia2 (ENSJJAG00000006298) #25	ENSJJAG00000003779 #26	Ccdc59 (ENSJJAG00000015263) #27	Mettl25 (ENSJJAG00000023860) #28	Tmtc2 (ENSJJAG00000016641) #29	Slc6a15 (ENSJJAG00000006373) #30	Alx1 (ENSJJAG00000006817) #31	ENSJJAG00000002806 #32	Rassf9 (ENSJJAG00000013251) #33	Nts (ENSJJAG00000014653) #34	Mgat4c (ENSJJAG00000021989) #35	1700017N19Rik (ENSJJAG00000023823) #36	4930430F08Rik (ENSJJAG00000013569) #37
Muroidea	ANCESTRAL SPECIES	5	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Muroidea_A	ANCESTRAL SPECIES	22	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37	ENSGT00730000111039.C
Cricetidae	ANCESTRAL SPECIES	21	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37	ENSGT00730000111039.C
Cricetinae	ANCESTRAL SPECIES	22	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37	ENSGT00730000111039.C
Chinese hamster chok1gshd	MODERN SPECIES	83	Osbpl8 (ENSCGRG00001021286) #8	Zdhhc17 (ENSCGRG00001007660) #9	Csrp2 (ENSCGRG00001000844) #10	E2f7 (ENSCGRG00001006568) #12	ENSCGRG00001011762	Nav3 (ENSCGRG00001022037) #14	Brcc3dc (ENSCGRG00001009076)	Syt1 (ENSCGRG00001000069) #16	ENSCGRG00001010398	ENSCGRG00001009057	Pawr (ENSCGRG00001011044) #17	Ppp1r12a (ENSCGRG00001017263) #18	Otogl (ENSCGRG00001018530) #19	Ptprq (ENSCGRG00001017128) #20	Myf6 (ENSCGRG00001006341) #21	Myf5 (ENSCGRG00001009370) #22	Lin7a (ENSCGRG00001003313) #23	Acss3 (ENSCGRG00001009906) #24	Ppfia2 (ENSCGRG00001020914) #25	ENSCGRG00001016413 #28	Syn3 (ENSCGRG00001000589)	Timp3 (ENSCGRG00001016875)	Fbxo7 (ENSCGRG00001019488)	Bpifc (ENSCGRG00001023438)	Rtcb (ENSCGRG00001011173)	Ascl4 (ENSCGRG00001008661)	ENSCGRG00001015102	Pwp1 (ENSCGRG00001019668)	Abtb3 (ENSCGRG00001021266)	Cry1 (ENSCGRG00001001431)	Mterf2 (ENSCGRG00001003171)
Golden Hamster	MODERN SPECIES	628	ENSMAUG00000021584	Nap1l1 (ENSMAUG00000016700)	Bbs10 (ENSMAUG00000018240) #7	Osbpl8 (ENSMAUG00000022092) #8	Zdhhc17 (ENSMAUG00000021687) #9	Csrp2 (ENSMAUG00000018727) #10	E2f7 (ENSMAUG00000010792) #12	Nav3 (ENSMAUG00000012505) #14	ENSMAUG00000014224	Syt1 (ENSMAUG00000012263) #16	ENSMAUG00000008984	Ppp1r12a (ENSMAUG00000021712) #18	Otogl (ENSMAUG00000009930) #19	Ptprq (ENSMAUG00000014282) #20	Myf6 (ENSMAUG00000019329) #21	Myf5 (ENSMAUG00000000933) #22	Lin7a (ENSMAUG00000007088) #23	Acss3 (ENSMAUG00000014131) #24	ENSMAUG00000019031	Ppfia2 (ENSMAUG00000021622) #25	Ccdc59 (ENSMAUG00000017516) #27	Mettl25 (ENSMAUG00000020950) #28	Tmtc2 (ENSMAUG00000015691) #29	Slc6a15 (ENSMAUG00000018360) #30	ENSMAUG00000001372	Alx1 (ENSMAUG00000015563) #31	Rassf9 (ENSMAUG00000012420) #33	Nts (ENSMAUG00000013146) #34	ENSMAUG00000004735 #35	ENSMAUG00000008756 #36	4930430F08Rik (ENSMAUG00000013438) #37
Cricetidae_B	ANCESTRAL SPECIES	29	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37	ENSGT00730000111039.C
Prairie vole	MODERN SPECIES	10	Phlda1 (ENSMOCG00000021889)	Nap1l1 (ENSMOCG00000012136)	Bbs10 (ENSMOCG00000020010) #7	Osbpl8 (ENSMOCG00000016633) #8	Zdhhc17 (ENSMOCG00000002407) #9	Csrp2 (ENSMOCG00000007217) #10	E2f7 (ENSMOCG00000021130) #12	Nav3 (ENSMOCG00000018391) #14	ENSMOCG00000020523	Syt1 (ENSMOCG00000012503) #16	Pawr (ENSMOCG00000019570) #17	Ppp1r12a (ENSMOCG00000018418) #18	Otogl (ENSMOCG00000018409) #19	Ptprq (ENSMOCG00000017842) #20	Myf6 (ENSMOCG00000015833) #21	Myf5 (ENSMOCG00000017847) #22	Lin7a (ENSMOCG00000021369) #23	Acss3 (ENSMOCG00000012086) #24	Ppfia2 (ENSMOCG00000007873) #25	Ccdc59 (ENSMOCG00000006690) #27	Mettl25 (ENSMOCG00000018000) #28	Tmtc2 (ENSMOCG00000012479) #29	ENSMOCG00000016887	ENSMOCG00000010194	Slc6a15 (ENSMOCG00000002838) #30	ENSMOCG00000019991	Alx1 (ENSMOCG00000007046) #31	Rassf9 (ENSMOCG00000010972) #33	Nts (ENSMOCG00000000690) #34	Mgat4c (ENSMOCG00000012409) #35	1700017N19Rik (ENSMOCG00000017688) #36
Northern American deer mouse	MODERN SPECIES	9	Phlda1 (ENSPEMG00000020277)	Nap1l1 (ENSPEMG00000000646)	Bbs10 (ENSPEMG00000031116) #7	Osbpl8 (ENSPEMG00000008934) #8	Zdhhc17 (ENSPEMG00000011257) #9	Csrp2 (ENSPEMG00000012653) #10	E2f7 (ENSPEMG00000013555) #12	Nav3 (ENSPEMG00000003783) #14	Brcc3dc (ENSPEMG00000012864)	Syt1 (ENSPEMG00000011853) #16	Pawr (ENSPEMG00000031267) #17	Ppp1r12a (ENSPEMG00000011824) #18	Otogl (ENSPEMG00000005921) #19	Ptprq (ENSPEMG00000019976) #20	Myf6 (ENSPEMG00000019751) #21	Myf5 (ENSPEMG00000018818) #22	Lin7a (ENSPEMG00000018576) #23	Acss3 (ENSPEMG00000017696) #24	Ppfia2 (ENSPEMG00000015993) #25	Ccdc59 (ENSPEMG00000031144) #27	Mettl25 (ENSPEMG00000013112) #28	Tmtc2 (ENSPEMG00000020725) #29	Mgat4c (ENSPEMG00000019377) #35	Nts (ENSPEMG00000024525) #34	Rassf9 (ENSPEMG00000012691) #33	Alx1 (ENSPEMG00000011110) #31	Lrriq1 (ENSPEMG00000012353)	Slc6a15 (ENSPEMG00000010154) #30	1700017N19Rik (ENSPEMG00000010447) #36	4930430F08Rik (ENSPEMG00000016254) #37	Cep290 (ENSPEMG00000008348)
Murinae	ANCESTRAL SPECIES	22	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Mus	ANCESTRAL SPECIES	23	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37	ENSGT00730000111039.C
Mus_A	ANCESTRAL SPECIES	11	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37	ENSGT00730000111039.C
Mus_B	ANCESTRAL SPECIES	10	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37	ENSGT00730000111039.C
Mouse	MODERN SPECIES	1	Phlda1 (ENSMUSG00000020205)	Nap1l1 (ENSMUSG00000058799)	Bbs10 (ENSMUSG00000035759) #7	Osbpl8 (ENSMUSG00000020189) #8	Zdhhc17 (ENSMUSG00000035798) #9	Csrp2 (ENSMUSG00000020186) #10	E2f7 (ENSMUSG00000020185) #12	Nav3 (ENSMUSG00000020181) #14	Brcc3dc (ENSMUSG00000112039)	Syt1 (ENSMUSG00000035864) #16	Pawr (ENSMUSG00000035873) #17	Ppp1r12a (ENSMUSG00000019907) #18	Otogl (ENSMUSG00000091455) #19	Ptprq (ENSMUSG00000035916) #20	Myf6 (ENSMUSG00000035923) #21	Myf5 (ENSMUSG00000000435) #22	Lin7a (ENSMUSG00000019906) #23	Acss3 (ENSMUSG00000035948) #24	Ppfia2 (ENSMUSG00000053825) #25	Ccdc59 (ENSMUSG00000019897) #27	Mettl25 (ENSMUSG00000036009) #28	Tmtc2 (ENSMUSG00000036019) #29	Gm4340 (ENSMUSG00000090854)	Gm20765 (ENSMUSG00000095022)	Gm21312 (ENSMUSG00000094144)	Gm21304 (ENSMUSG00000097550)	Gm8764 (ENSMUSG00000097878)	Gm6763 (ENSMUSG00000097427)	Gm21293 (ENSMUSG00000091779)	Slc6a15 (ENSMUSG00000019894) #30	Lrriq1 (ENSMUSG00000019892)
Mus_C	ANCESTRAL SPECIES	7	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37	ENSGT00730000111039.C
spretus	MODERN SPECIES	1	Krr1 (MGP_SPRETEiJ_G0016622)	Phlda1 (MGP_SPRETEiJ_G0016621)	Nap1l1 (MGP_SPRETEiJ_G0016620)	Bbs10 (MGP_SPRETEiJ_G0016619) #7	Osbpl8 (MGP_SPRETEiJ_G0016618) #8	Zdhhc17 (MGP_SPRETEiJ_G0016617) #9	Csrp2 (MGP_SPRETEiJ_G0016616) #10	E2f7 (MGP_SPRETEiJ_G0016615) #12	Nav3 (MGP_SPRETEiJ_G0016614) #14	Syt1 (MGP_SPRETEiJ_G0016613) #16	Pawr (MGP_SPRETEiJ_G0016612) #17	Ppp1r12a (MGP_SPRETEiJ_G0016611) #18	Otogl (MGP_SPRETEiJ_G0016610) #19	Ptprq (MGP_SPRETEiJ_G0016609) #20	Myf6 (MGP_SPRETEiJ_G0016608) #21	Myf5 (MGP_SPRETEiJ_G0016607) #22	Lin7a (MGP_SPRETEiJ_G0016606) #23	Acss3 (MGP_SPRETEiJ_G0016605) #24	Ppfia2 (MGP_SPRETEiJ_G0016604) #25	Ccdc59 (MGP_SPRETEiJ_G0016603) #27	Mettl25 (MGP_SPRETEiJ_G0016602) #28	Tmtc2 (MGP_SPRETEiJ_G0016601) #29	Slc6a15 (MGP_SPRETEiJ_G0016600) #30	MGP_SPRETEiJ_G0016599	Alx1 (MGP_SPRETEiJ_G0016598) #31	Rassf9 (MGP_SPRETEiJ_G0016597) #33	Nts (MGP_SPRETEiJ_G0016596) #34	Mgat4c (MGP_SPRETEiJ_G0016595) #35	1700017N19Rik (MGP_SPRETEiJ_G0016594) #36	4930430F08Rik (MGP_SPRETEiJ_G0016593) #37	Cep290 (MGP_SPRETEiJ_G0016592)
Steppe mouse	MODERN SPECIES	3222							Nav3 (ENSMSIG00000028730) #14	Syt1 (ENSMSIG00000028850) #16	Pawr (ENSMSIG00000028867) #17	Ppp1r12a (ENSMSIG00000028882) #18	ENSMSIG00000029031	ENSMSIG00000029033	Otogl (ENSMSIG00000029034) #19	Ptprq (ENSMSIG00000029070) #20	Myf6 (ENSMSIG00000029104) #21	Myf5 (ENSMSIG00000029106) #22
Ryukyu mouse	MODERN SPECIES	1	Krr1 (MGP_CAROLIEiJ_G0015800)	Phlda1 (MGP_CAROLIEiJ_G0015799)	Nap1l1 (MGP_CAROLIEiJ_G0015798)	Bbs10 (MGP_CAROLIEiJ_G0015797) #7	Osbpl8 (MGP_CAROLIEiJ_G0015796) #8	Zdhhc17 (MGP_CAROLIEiJ_G0015795) #9	Csrp2 (MGP_CAROLIEiJ_G0015794) #10	E2f7 (MGP_CAROLIEiJ_G0015793) #12	Nav3 (MGP_CAROLIEiJ_G0015792) #14	Syt1 (MGP_CAROLIEiJ_G0015791) #16	MGP_CAROLIEiJ_G0015790 #17	Ppp1r12a (MGP_CAROLIEiJ_G0015789) #18	Otogl (MGP_CAROLIEiJ_G0015788) #19	Ptprq (MGP_CAROLIEiJ_G0015787) #20	Myf6 (MGP_CAROLIEiJ_G0015786) #21	Myf5 (MGP_CAROLIEiJ_G0015785) #22	Lin7a (MGP_CAROLIEiJ_G0015784) #23	Acss3 (MGP_CAROLIEiJ_G0015783) #24	Ppfia2 (MGP_CAROLIEiJ_G0015782) #25	Ccdc59 (MGP_CAROLIEiJ_G0015781) #27	Mettl25 (MGP_CAROLIEiJ_G0015780) #28	Tmtc2 (MGP_CAROLIEiJ_G0015779) #29	Slc6a15 (MGP_CAROLIEiJ_G0015778) #30	MGP_CAROLIEiJ_G0015777	Alx1 (MGP_CAROLIEiJ_G0015776) #31	Rassf9 (MGP_CAROLIEiJ_G0015775) #33	Nts (MGP_CAROLIEiJ_G0015774) #34	Mgat4c (MGP_CAROLIEiJ_G0015773) #35	1700017N19Rik (MGP_CAROLIEiJ_G0015772) #36	4930430F08Rik (MGP_CAROLIEiJ_G0015771) #37	Cep290 (MGP_CAROLIEiJ_G0015770)
Shrew mouse	MODERN SPECIES	22	Krr1 (MGP_PahariEiJ_G0031287)	Phlda1 (MGP_PahariEiJ_G0031288)	MGP_PahariEiJ_G0031289	Bbs10 (MGP_PahariEiJ_G0031290) #7	Osbpl8 (MGP_PahariEiJ_G0031291) #8	Zdhhc17 (MGP_PahariEiJ_G0031292) #9	Csrp2 (MGP_PahariEiJ_G0031293) #10	E2f7 (MGP_PahariEiJ_G0031294) #12	MGP_PahariEiJ_G0031295 #14	Syt1 (MGP_PahariEiJ_G0031296) #16	Pawr (MGP_PahariEiJ_G0031297) #17	Ppp1r12a (MGP_PahariEiJ_G0031298) #18	MGP_PahariEiJ_G0031299 #19	Ptprq (MGP_PahariEiJ_G0031300) #20	Myf6 (MGP_PahariEiJ_G0031301) #21	Myf5 (MGP_PahariEiJ_G0031302) #22	Lin7a (MGP_PahariEiJ_G0031303) #23	Acss3 (MGP_PahariEiJ_G0031304) #24	Ppfia2 (MGP_PahariEiJ_G0031305) #25	Ccdc59 (MGP_PahariEiJ_G0031306) #27	Mettl25 (MGP_PahariEiJ_G0031307) #28	Tmtc2 (MGP_PahariEiJ_G0031308) #29	Slc6a15 (MGP_PahariEiJ_G0031309) #30	MGP_PahariEiJ_G0031310	Alx1 (MGP_PahariEiJ_G0031311) #31	Rassf9 (MGP_PahariEiJ_G0031312) #33	Nts (MGP_PahariEiJ_G0031313) #34	Mgat4c (MGP_PahariEiJ_G0031314) #35	1700017N19Rik (MGP_PahariEiJ_G0031315) #36	4930430F08Rik (MGP_PahariEiJ_G0031316) #37	Cep290 (MGP_PahariEiJ_G0031317)
Rat	MODERN SPECIES	17	Nap1l1 (ENSRNOG00000003890)	Bbs10 (ENSRNOG00000026913) #7	ENSRNOG00000062798	Osbpl8 (ENSRNOG00000026962) #8	Zdhhc17 (ENSRNOG00000003803) #9	Csrp2 (ENSRNOG00000003772) #10	E2f7 (ENSRNOG00000026252) #12	Nav3 (ENSRNOG00000052157) #14	Brcc3dc (ENSRNOG00000070196)	Syt1 (ENSRNOG00000006426) #16	Pawr (ENSRNOG00000005917) #17	Ppp1r12a (ENSRNOG00000004925) #18	Otogl (ENSRNOG00000030316) #19	Ptprq (ENSRNOG00000056915) #20	Myf6 (ENSRNOG00000004878) #21	Myf5 (ENSRNOG00000004768) #22	Lin7a (ENSRNOG00000004527) #23	Acss3 (ENSRNOG00000004448) #24	Ppfia2 (ENSRNOG00000004353) #25	ENSRNOG00000063471	Ccdc59 (ENSRNOG00000004183) #27	Mettl25 (ENSRNOG00000027451) #28	Tmtc2 (ENSRNOG00000004585) #29	Slc6a15 (ENSRNOG00000027468) #30	Lrriq1 (ENSRNOG00000004564)	Alx1 (ENSRNOG00000004390) #31	Rassf9 (ENSRNOG00000038574) #33	Nts (ENSRNOG00000004179) #34	Mgat4c (ENSRNOG00000004149) #35	AABR07056845.1 (ENSRNOG00000023762)	LOC500827 (ENSRNOG00000051928) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	494	ENSNGAG00000014133	Bbs10 (ENSNGAG00000022298) #7	Osbpl8 (ENSNGAG00000014231) #8	Zdhhc17 (ENSNGAG00000009049) #9	ENSNGAG00000023257 #10	E2f7 (ENSNGAG00000023644) #12	ENSNGAG00000024182	Nav3 (ENSNGAG00000024210) #14	Syt1 (ENSNGAG00000020988) #16	Pawr (ENSNGAG00000015922) #17	Ppp1r12a (ENSNGAG00000023300) #18	ENSNGAG00000024231	Otogl (ENSNGAG00000022483) #19	Ptprq (ENSNGAG00000024172) #20	Myf6 (ENSNGAG00000023390) #21	Myf5 (ENSNGAG00000003539) #22	Lin7a (ENSNGAG00000022827) #23	Acss3 (ENSNGAG00000015078) #24	Ppfia2 (ENSNGAG00000022807) #25	ENSNGAG00000012599	Ccdc59 (ENSNGAG00000023637) #27	Mettl25 (ENSNGAG00000016246) #28	Tmtc2 (ENSNGAG00000023652) #29
Kangaroo rat	MODERN SPECIES	322	ENSDORG00000023399	Phlda1 (ENSDORG00000027757)	Nap1l1 (ENSDORG00000029138)	Bbs10 (ENSDORG00000000668) #7	Osbpl8 (ENSDORG00000000670) #8	Zdhhc17 (ENSDORG00000012435) #9	Csrp2 (ENSDORG00000012441) #10	ENSDORG00000026154 #12	Nav3 (ENSDORG00000011080) #14	Syt1 (ENSDORG00000003724) #16	Pawr (ENSDORG00000029489) #17	Ppp1r12a (ENSDORG00000007157) #18	Otogl (ENSDORG00000028677) #19	Ptprq (ENSDORG00000023208) #20	Myf6 (ENSDORG00000015435) #21	Myf5 (ENSDORG00000015437) #22	Lin7a (ENSDORG00000014355) #23	Acss3 (ENSDORG00000007288) #24	Ppfia2 (ENSDORG00000007289) #25	Mettl25 (ENSDORG00000003006) #28	Tmtc2 (ENSDORG00000005875) #29	Slc6a15 (ENSDORG00000000388) #30	ENSDORG00000008703	ENSDORG00000011012	Alx1 (ENSDORG00000011021) #31	Rassf9 (ENSDORG00000029782) #33	Nts (ENSDORG00000016284) #34	Mgat4c (ENSDORG00000025545) #35	1700017N19Rik (ENSDORG00000015892) #36	4930430F08Rik (ENSDORG00000015893) #37	Cep290 (ENSDORG00000015894)
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Sciuridae	ANCESTRAL SPECIES	14	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Marmotini	ANCESTRAL SPECIES	4	ENSGT00390000018775.ab	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00390000009130.a.a.b.h	ENSGT00920000149095.b #36
Marmotini_b	ANCESTRAL SPECIES	3	ENSGT00390000018775.ab	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00390000009130.a.a.b.h	ENSGT00920000149095.b #36
Arctic ground squirrel	MODERN SPECIES	89														PTPRQ (ENSUPAG00010013494) #20	MYF6 (ENSUPAG00010013483) #21	MYF5 (ENSUPAG00010013472) #22	LIN7A (ENSUPAG00010013458) #23	ACSS3 (ENSUPAG00010013440) #24	PPFIA2 (ENSUPAG00010013381) #25	CCDC59 (ENSUPAG00010013356) #27	METTL25 (ENSUPAG00010013340) #28	TMTC2 (ENSUPAG00010013331) #29	ENSUPAG00010013316	SLC6A15 (ENSUPAG00010013281) #30	TSPAN19 (ENSUPAG00010013269)	ENSUPAG00010013204	ALX1 (ENSUPAG00010013178) #31	RASSF9 (ENSUPAG00010013163) #33	NTS (ENSUPAG00010013159) #34	MGAT4C (ENSUPAG00010013143) #35
Squirrel	MODERN SPECIES	298										SYT1 (ENSSTOG00000022817) #16	PAWR (ENSSTOG00000015765) #17	PPP1R12A (ENSSTOG00000011329) #18	OTOGL (ENSSTOG00000019523) #19	PTPRQ (ENSSTOG00000024058) #20	MYF6 (ENSSTOG00000015808) #21	MYF5 (ENSSTOG00000015810) #22	LIN7A (ENSSTOG00000015812) #23	ACSS3 (ENSSTOG00000013956) #24	PPFIA2 (ENSSTOG00000013971) #25
Alpin marmot	MODERN SPECIES	11	GLIPR1 (ENSMMMG00000002546)	KRR1 (ENSMMMG00000002493)	PHLDA1 (ENSMMMG00000002474)	ENSMMMG00000002289	BBS10 (ENSMMMG00000002273) #7	OSBPL8 (ENSMMMG00000002240) #8	ZDHHC17 (ENSMMMG00000002185) #9	ENSMMMG00000002164 #10	E2F7 (ENSMMMG00000002119) #12	NAV3 (ENSMMMG00000002035) #14	SYT1 (ENSMMMG00000001991) #16	PPP1R12A (ENSMMMG00000001751) #18	OTOGL (ENSMMMG00000001599) #19	PTPRQ (ENSMMMG00000001485) #20	MYF6 (ENSMMMG00000001463) #21	MYF5 (ENSMMMG00000001446) #22	LIN7A (ENSMMMG00000001429) #23	ACSS3 (ENSMMMG00000001391) #24	PPFIA2 (ENSMMMG00000001244) #25	CCDC59 (ENSMMMG00000001213) #27	METTL25 (ENSMMMG00000001158) #28	TMTC2 (ENSMMMG00000001120) #29	ENSMMMG00000001090	SLC6A15 (ENSMMMG00000001050) #30	TSPAN19 (ENSMMMG00000001031)	LRRIQ1 (ENSMMMG00000000979)	ALX1 (ENSMMMG00000000949) #31	NTS (ENSMMMG00000000924) #34	MGAT4C (ENSMMMG00000000872) #35	ENSMMMG00000000843	ENSMMMG00000000830
Eurasian red squirrel	MODERN SPECIES	14	NAP1L1 (ENSSVLG00005023160)	BBS10 (ENSSVLG00005023257) #7	ENSSVLG00005023266	OSBPL8 (ENSSVLG00005023307) #8	ZDHHC17 (ENSSVLG00005023480) #9	ENSSVLG00005023521 #10	E2F7 (ENSSVLG00005023615) #12	ENSSVLG00005023728	NAV3 (ENSSVLG00005023837) #14	SYT1 (ENSSVLG00005024299) #16	PAWR (ENSSVLG00005024360) #17	PPP1R12A (ENSSVLG00005024407) #18	OTOGL (ENSSVLG00005024601) #19	PTPRQ (ENSSVLG00005025041) #20	MYF6 (ENSSVLG00005025222) #21	MYF5 (ENSSVLG00005025239) #22	LIN7A (ENSSVLG00005025250) #23	BLVRB (ENSSVLG00005025266)	ACSS3 (ENSSVLG00005000239) #24	PPFIA2 (ENSSVLG00005001201) #25	CCDC59 (ENSSVLG00005002316) #27	METTL25 (ENSSVLG00005002343) #28	TMTC2 (ENSSVLG00005002395) #29	SLC6A15 (ENSSVLG00005002476) #30	TSPAN19 (ENSSVLG00005002560)	LRRIQ1 (ENSSVLG00005002609)	ALX1 (ENSSVLG00005002747) #31	RASSF9 (ENSSVLG00005002780) #33	NTS (ENSSVLG00005002800) #34	MGAT4C (ENSSVLG00005002827) #35	ENSSVLG00005002860
Hystricomorpha	ANCESTRAL SPECIES	9	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37	ENSGT00730000111039.C
Hystricomorpha_a	ANCESTRAL SPECIES	7	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37	ENSGT00730000111039.C
Guinea pig	MODERN SPECIES	9	KRR1 (ENSCPOG00000014353)	PHLDA1 (ENSCPOG00000003245)	NAP1L1 (ENSCPOG00000019420)	BBS10 (ENSCPOG00000038158) #7	OSBPL8 (ENSCPOG00000001130) #8	ZDHHC17 (ENSCPOG00000012534) #9	CSRP2 (ENSCPOG00000031460) #10	E2F7 (ENSCPOG00000007375) #12	NAV3 (ENSCPOG00000015431) #14	SYT1 (ENSCPOG00000002054) #16	PAWR (ENSCPOG00000002469) #17	PPP1R12A (ENSCPOG00000004019) #18	OTOGL (ENSCPOG00000022231) #19	PTPRQ (ENSCPOG00000031105) #20	MYF6 (ENSCPOG00000030745) #21	MYF5 (ENSCPOG00000007766) #22	LIN7A (ENSCPOG00000001373) #23	ACSS3 (ENSCPOG00000003451) #24	PPFIA2 (ENSCPOG00000003459) #25	CCDC59 (ENSCPOG00000036718) #27	METTL25 (ENSCPOG00000011621) #28	TMTC2 (ENSCPOG00000005425) #29	SLC6A15 (ENSCPOG00000003103) #30	ENSCPOG00000022026	ALX1 (ENSCPOG00000027131) #31	ENSCPOG00000040399	RASSF9 (ENSCPOG00000030989) #33	NTS (ENSCPOG00000006576) #34	MGAT4C (ENSCPOG00000013992) #35	C12orf50 (ENSCPOG00000012468) #36	C12orf29 (ENSCPOG00000039127) #37
Hystricomorpha_b	ANCESTRAL SPECIES	13	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37	ENSGT00730000111039.C
Long-tailed chinchilla	MODERN SPECIES	112	ENSCLAG00000005333	BBS10 (ENSCLAG00000007902) #7	OSBPL8 (ENSCLAG00000010204) #8	ENSCLAG00000017859	ZDHHC17 (ENSCLAG00000011124) #9	CSRP2 (ENSCLAG00000008899) #10	E2F7 (ENSCLAG00000007164) #12	NAV3 (ENSCLAG00000012036) #14	ENSCLAG00000005685	SYT1 (ENSCLAG00000004862) #16	PAWR (ENSCLAG00000008196) #17	PPP1R12A (ENSCLAG00000006399) #18	OTOGL (ENSCLAG00000006526) #19	PTPRQ (ENSCLAG00000012232) #20	MYF6 (ENSCLAG00000013875) #21	MYF5 (ENSCLAG00000014410) #22	ENSCLAG00000013764 #23	ACSS3 (ENSCLAG00000005808) #24	PPFIA2 (ENSCLAG00000008120) #25	CCDC59 (ENSCLAG00000015050) #27	METTL25 (ENSCLAG00000014989) #28	TMTC2 (ENSCLAG00000008519) #29	SLC6A15 (ENSCLAG00000009597) #30	LRRIQ1 (ENSCLAG00000007042)	ALX1 (ENSCLAG00000007151) #31	RASSF9 (ENSCLAG00000007610) #33	NTS (ENSCLAG00000007844) #34	MGAT4C (ENSCLAG00000008726) #35	C12orf50 (ENSCLAG00000006991) #36	C12orf29 (ENSCLAG00000004653) #37	CEP290 (ENSCLAG00000006047)
Degu	MODERN SPECIES	45	OSBPL8 (ENSODEG00000007618) #8	ENSODEG00000007367	ZDHHC17 (ENSODEG00000010670) #9	CSRP2 (ENSODEG00000008449) #10	ENSODEG00000008575 #12	NAV3 (ENSODEG00000010398) #14	ENSODEG00000007970	SYT1 (ENSODEG00000008387) #16	ENSODEG00000007440	PAWR (ENSODEG00000008160) #17	ENSODEG00000019636	PPP1R12A (ENSODEG00000009363) #18	OTOGL (ENSODEG00000007895) #19	PTPRQ (ENSODEG00000007761) #20	MYF6 (ENSODEG00000007305) #21	MYF5 (ENSODEG00000007510) #22	LIN7A (ENSODEG00000007832) #23	ENSODEG00000019454	ACSS3 (ENSODEG00000007503) #24	PPFIA2 (ENSODEG00000007419) #25	CCDC59 (ENSODEG00000009427) #27	METTL25 (ENSODEG00000010203) #28	TMTC2 (ENSODEG00000007730) #29	ENSODEG00000009267	ENSODEG00000009875	SLC6A15 (ENSODEG00000007508) #30	ENSODEG00000007801	ALX1 (ENSODEG00000008008) #31	RASSF9 (ENSODEG00000008024) #33	NTS (ENSODEG00000008426) #34	MGAT4C (ENSODEG00000011210) #35
Naked mole-rat female	MODERN SPECIES	8	ENSHGLG00000044176	ENSHGLG00000004489	ENSHGLG00000009233 #9	ENSHGLG00000008206 #10	E2F7 (ENSHGLG00000006491) #12	NAV3 (ENSHGLG00000012083) #14	ENSHGLG00000010015	ENSHGLG00000042592	SYT1 (ENSHGLG00000047548) #16	PAWR (ENSHGLG00000017940) #17	ENSHGLG00000036431	PPP1R12A (ENSHGLG00000014201) #18	OTOGL (ENSHGLG00000013295) #19	PTPRQ (ENSHGLG00000011762) #20	MYF6 (ENSHGLG00000003419) #21	MYF5 (ENSHGLG00000003654) #22	ENSHGLG00000003757 #23	ACSS3 (ENSHGLG00000004579) #24	PPFIA2 (ENSHGLG00000000429) #25	ENSHGLG00000036317	CCDC59 (ENSHGLG00000001711) #27	METTL25 (ENSHGLG00000038393) #28	TMTC2 (ENSHGLG00000000320) #29	ENSHGLG00000018244	ENSHGLG00000000758	ENSHGLG00000000965 #30	LRRIQ1 (ENSHGLG00000000302)	ALX1 (ENSHGLG00000000937) #31	ENSHGLG00000036253	RASSF9 (ENSHGLG00000034316) #33	NTS (ENSHGLG00000001320) #34
Lagomorpha	ANCESTRAL SPECIES	113	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Rabbit	MODERN SPECIES	15	ENSOCUG00000028124	ZDHHC17 (ENSOCUG00000010401) #9	ENSOCUG00000027238	ENSOCUG00000008330 #10	E2F7 (ENSOCUG00000004932) #12	ENSOCUG00000025947	NAV3 (ENSOCUG00000004936) #14	ENSOCUG00000005148	SYT1 (ENSOCUG00000014829) #16	PAWR (ENSOCUG00000013722) #17	PPP1R12A (ENSOCUG00000016701) #18	ENSOCUG00000037584	OTOGL (ENSOCUG00000014963) #19	PTPRQ (ENSOCUG00000011455) #20	MYF6 (ENSOCUG00000001457) #21	MYF5 (ENSOCUG00000025477) #22	LIN7A (ENSOCUG00000004203) #23	ACSS3 (ENSOCUG00000015752) #24	PPFIA2 (ENSOCUG00000015770) #25	ENSOCUG00000036764	CCDC59 (ENSOCUG00000017824) #27	METTL25 (ENSOCUG00000017825) #28	TMTC2 (ENSOCUG00000017847) #29	SLC6A15 (ENSOCUG00000014066) #30	TSPAN19 (ENSOCUG00000037319)	ENSOCUG00000034706	LRRIQ1 (ENSOCUG00000017527)	ALX1 (ENSOCUG00000009125) #31	ENSOCUG00000036577	RASSF9 (ENSOCUG00000017872) #33	NTS (ENSOCUG00000010336) #34
Pika	MODERN SPECIES	1627														ENSOPRG00000008989 #20	MYF6 (ENSOPRG00000008999) #21	MYF5 (ENSOPRG00000009007) #22	LIN7A (ENSOPRG00000009017) #23
Tree shrew	MODERN SPECIES	370															MYF6 (ENSTBEG00000007822) #21	MYF5 (ENSTBEG00000008363) #22
Primates	ANCESTRAL SPECIES	6	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Haplorrhini	ANCESTRAL SPECIES	3	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Simiiformes	ANCESTRAL SPECIES	4	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Catarrhini	ANCESTRAL SPECIES	4	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Hominoidea	ANCESTRAL SPECIES	5	ENSGT00940000153362.a	ENSGT00880000138028.b.b.b	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546.c #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Hominidae	ANCESTRAL SPECIES	4	ENSGT00940000153362.a	ENSGT00880000138028.b.b.b	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546.c #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	5	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00880000138028.b.b.b	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546.c #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.a.b	ENSGT00920000149095.b #36
Gorilla	MODERN SPECIES	3	ZDHHC17 (ENSGGOG00000023287) #9	ENSGGOG00000039704 #10	ENSGGOG00000041578 #10	ENSGGOG00000038839	E2F7 (ENSGGOG00000012645) #12	NAV3 (ENSGGOG00000006574) #14	ENSGGOG00000002908	SYT1 (ENSGGOG00000024224) #16	ENSGGOG00000022534	PAWR (ENSGGOG00000010093) #17	PPP1R12A (ENSGGOG00000014574) #18	ENSGGOG00000025286	ENSGGOG00000015088 #19	PTPRQ (ENSGGOG00000011494) #20	MYF6 (ENSGGOG00000004369) #21	MYF5 (ENSGGOG00000004366) #22	LIN7A (ENSGGOG00000038053) #23	ACSS3 (ENSGGOG00000010105) #24	PPFIA2 (ENSGGOG00000026460) #25	CCDC59 (ENSGGOG00000025296) #27	METTL25 (ENSGGOG00000023239) #28	TMTC2 (ENSGGOG00000028180) #29	ENSGGOG00000025311	SLC6A15 (ENSGGOG00000010440) #30	TSPAN19 (ENSGGOG00000022316)	LRRIQ1 (ENSGGOG00000010081)	ALX1 (ENSGGOG00000000168) #31	RASSF9 (ENSGGOG00000028426) #33	NTS (ENSGGOG00000010239) #34	MGAT4C (ENSGGOG00000015293) #35	ENSGGOG00000025144
Homo/Pan group	ANCESTRAL SPECIES	6	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00880000138028.b.b.b	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546.c #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.a.b	ENSGT00920000149095.b #36
Pan	ANCESTRAL SPECIES	4	ENSGT00940000156622 #8	ENSGT00950000182922.a.a.a.b.a.b.a.b.b.a	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000154389.b.e	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546.c #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.a.b	ENSGT00920000149095.b #36
Chimpanzee	MODERN SPECIES	3	ZDHHC17 (ENSPTRG00000005243) #9	CSRP2 (ENSPTRG00000005244) #10	ENSPTRG00000051009	E2F7 (ENSPTRG00000005245) #12	NAV3 (ENSPTRG00000005247) #14	ENSPTRG00000046920	ENSPTRG00000044151	ENSPTRG00000050322	SYT1 (ENSPTRG00000024064) #16	PAWR (ENSPTRG00000005250) #17	PPP1R12A (ENSPTRG00000005252) #18	ENSPTRG00000045837	OTOGL (ENSPTRG00000005257) #19	PTPRQ (ENSPTRG00000039205) #20	MYF6 (ENSPTRG00000005260) #21	MYF5 (ENSPTRG00000005261) #22	LIN7A (ENSPTRG00000005262) #23	ACSS3 (ENSPTRG00000005263) #24	PPFIA2 (ENSPTRG00000005265) #25	CCDC59 (ENSPTRG00000005266) #27	METTL25 (ENSPTRG00000005267) #28	TMTC2 (ENSPTRG00000005268) #29	SLC6A15 (ENSPTRG00000005269) #30	TSPAN19 (ENSPTRG00000040421)	LRRIQ1 (ENSPTRG00000005271)	ALX1 (ENSPTRG00000005272) #31	RASSF9 (ENSPTRG00000005273) #33	NTS (ENSPTRG00000005274) #34	MGAT4C (ENSPTRG00000045901) #35	ENSPTRG00000044899	C12H12orf50 (ENSPTRG00000005276) #36
Bonobo	MODERN SPECIES	3	OSBPL8 (ENSPPAG00000043423) #8	ENSPPAG00000040481	ZDHHC17 (ENSPPAG00000030097) #9	ENSPPAG00000042089 #10	ENSPPAG00000042681	E2F7 (ENSPPAG00000002532) #12	NAV3 (ENSPPAG00000036134) #14	ENSPPAG00000015674	ENSPPAG00000028521	SYT1 (ENSPPAG00000029261) #16	PAWR (ENSPPAG00000043711) #17	PPP1R12A (ENSPPAG00000030740) #18	OTOGL (ENSPPAG00000014085) #19	PTPRQ (ENSPPAG00000000830) #20	MYF6 (ENSPPAG00000032290) #21	MYF5 (ENSPPAG00000028699) #22	LIN7A (ENSPPAG00000026771) #23	ACSS3 (ENSPPAG00000040977) #24	PPFIA2 (ENSPPAG00000033118) #25	CCDC59 (ENSPPAG00000030113) #27	METTL25 (ENSPPAG00000028130) #28	TMTC2 (ENSPPAG00000043706) #29	SLC6A15 (ENSPPAG00000043054) #30	TSPAN19 (ENSPPAG00000042222)	LRRIQ1 (ENSPPAG00000029539)	ALX1 (ENSPPAG00000034056) #31	RASSF9 (ENSPPAG00000019366) #33	NTS (ENSPPAG00000032540) #34	MGAT4C (ENSPPAG00000031798) #35	ENSPPAG00000020965	ENSPPAG00000043288
Human	MODERN SPECIES	3	KRR1 (ENSG00000111615)	PHLDA1 (ENSG00000139289)	NAP1L1 (ENSG00000187109)	BBS10 (ENSG00000179941) #7	OSBPL8 (ENSG00000091039) #8	ZDHHC17 (ENSG00000186908) #9	CSRP2 (ENSG00000175183) #10	E2F7 (ENSG00000165891) #12	NAV3 (ENSG00000067798) #14	SYT1 (ENSG00000067715) #16	PAWR (ENSG00000177425) #17	PPP1R12A (ENSG00000058272) #18	OTOGL (ENSG00000165899) #19	PTPRQ (ENSG00000139304) #20	MYF6 (ENSG00000111046) #21	MYF5 (ENSG00000111049) #22	LIN7A (ENSG00000111052) #23	ACSS3 (ENSG00000111058) #24	PPFIA2 (ENSG00000139220) #25	CCDC59 (ENSG00000133773) #27	METTL25 (ENSG00000127720) #28	TMTC2 (ENSG00000179104) #29	SLC6A15 (ENSG00000072041) #30	TSPAN19 (ENSG00000231738)	LRRIQ1 (ENSG00000133640)	ALX1 (ENSG00000180318) #31	RASSF9 (ENSG00000198774) #33	NTS (ENSG00000133636) #34	MGAT4C (ENSG00000182050) #35	C12orf50 (ENSG00000165805) #36	C12orf29 (ENSG00000133641) #37
Orangutan	MODERN SPECIES	3	BBS10 (ENSPPYG00000004787) #7	ENSPPYG00000037353	OSBPL8 (ENSPPYG00000004788) #8	ZDHHC17 (ENSPPYG00000004789) #9	ENSPPYG00000031243 #10	E2F7 (ENSPPYG00000004791) #12	NAV3 (ENSPPYG00000004792) #14	ENSPPYG00000004793	SYT1 (ENSPPYG00000004794) #16	PAWR (ENSPPYG00000004795) #17	ENSPPYG00000025853	PPP1R12A (ENSPPYG00000004796) #18	OTOGL (ENSPPYG00000004797) #19	PTPRQ (ENSPPYG00000041069) #20	MYF6 (ENSPPYG00000004799) #21	MYF5 (ENSPPYG00000004800) #22	LIN7A (ENSPPYG00000039262) #23	ACSS3 (ENSPPYG00000004802) #24	PPFIA2 (ENSPPYG00000004803) #25	CCDC59 (ENSPPYG00000004804) #27	METTL25 (ENSPPYG00000004805) #28	TMTC2 (ENSPPYG00000004806) #29	SLC6A15 (ENSPPYG00000004807) #30	TSPAN19 (ENSPPYG00000038266)	LRRIQ1 (ENSPPYG00000004808)	RASSF9 (ENSPPYG00000033145) #33	NTS (ENSPPYG00000004810) #34	MGAT4C (ENSPPYG00000004811) #35	C12orf50 (ENSPPYG00000004812) #36	C12H12orf29 (ENSPPYG00000004813) #37	CEP290 (ENSPPYG00000004814)
Gibbon	MODERN SPECIES		NAP1L1 (ENSNLEG00000004682)	ENSNLEG00000031630	BBS10 (ENSNLEG00000004748) #7	OSBPL8 (ENSNLEG00000004750) #8	ZDHHC17 (ENSNLEG00000004841) #9	ENSNLEG00000004885 #10	ENSNLEG00000028737	E2F7 (ENSNLEG00000004897) #12	NAV3 (ENSNLEG00000004917) #14	SYT1 (ENSNLEG00000004995) #16	PAWR (ENSNLEG00000005035) #17	PPP1R12A (ENSNLEG00000005041) #18	OTOGL (ENSNLEG00000005115) #19	PTPRQ (ENSNLEG00000005154) #20	MYF6 (ENSNLEG00000032583) #21	MYF5 (ENSNLEG00000005207) #22	LIN7A (ENSNLEG00000032491) #23	ACSS3 (ENSNLEG00000005227) #24	PPFIA2 (ENSNLEG00000005251) #25	CCDC59 (ENSNLEG00000033968) #27	METTL25 (ENSNLEG00000005299) #28	TMTC2 (ENSNLEG00000005311) #29	SLC6A15 (ENSNLEG00000005336) #30	LRRIQ1 (ENSNLEG00000005358)	ALX1 (ENSNLEG00000005381) #31	RASSF9 (ENSNLEG00000005386) #33	NTS (ENSNLEG00000005388) #34	MGAT4C (ENSNLEG00000005393) #35	C12orf50 (ENSNLEG00000005395) #36	C12orf29 (ENSNLEG00000005396) #37	CEP290 (ENSNLEG00000005417)
Cercopithecidae	ANCESTRAL SPECIES	3	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Cercopithecinae	ANCESTRAL SPECIES	7	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Vervet Monkey	MODERN SPECIES	2	NAP1L1 (ENSCSAG00000004030)	BBS10 (ENSCSAG00000004028) #7	OSBPL8 (ENSCSAG00000004024) #8	ZDHHC17 (ENSCSAG00000004014) #9	CSRP2 (ENSCSAG00000004009) #10	E2F7 (ENSCSAG00000003998) #12	ENSCSAG00000003979 #14	ENSCSAG00000018912	ENSCSAG00000018914	SYT1 (ENSCSAG00000003971) #16	PAWR (ENSCSAG00000003962) #17	PPP1R12A (ENSCSAG00000003956) #18	OTOGL (ENSCSAG00000003939) #19	PTPRQ (ENSCSAG00000003913) #20	MYF6 (ENSCSAG00000003893) #21	MYF5 (ENSCSAG00000003889) #22	LIN7A (ENSCSAG00000003887) #23	ACSS3 (ENSCSAG00000003882) #24	PPFIA2 (ENSCSAG00000003876) #25	ENSCSAG00000003868 #25	CCDC59 (ENSCSAG00000003867) #27	METTL25 (ENSCSAG00000003863) #28	ENSCSAG00000018917	TMTC2 (ENSCSAG00000003860) #29	ENSCSAG00000018919	ENSCSAG00000018921	ENSCSAG00000018923	SLC6A15 (ENSCSAG00000003858) #30	TSPAN19 (ENSCSAG00000003855)	LRRIQ1 (ENSCSAG00000003850)	ALX1 (ENSCSAG00000003845) #31
Cercopithecinae_a	ANCESTRAL SPECIES	7	ENSGT00940000156622 #8	ENSGT01050000244986.b.b.d.a.a.b	ENSGT00390000009168.hb	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00940000153524.b.a.a.k.a	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00950000182767.b.b.d.hb.b.a.b.a.a.b.b
Macaca	ANCESTRAL SPECIES	6	ENSGT00940000156622 #8	ENSGT01050000244986.b.b.d.a.a.b	ENSGT00390000009168.hb	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00950000183030.m.a.a.b.b.a.b.a	ENSGT00910000147454	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00940000153524.b.a.a.k.a	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00950000182767.b.b.d.hb.b.a.b.a.a.b.b
Pig-tailed macaque	MODERN SPECIES	517	E2F7 (ENSMNEG00000025875) #12	NAV3 (ENSMNEG00000043424) #14	ENSMNEG00000000985	ENSMNEG00000009689	ENSMNEG00000026858	ENSMNEG00000028899	ENSMNEG00000037055	ENSMNEG00000038165	ENSMNEG00000031657	SYT1 (ENSMNEG00000030551) #16	PAWR (ENSMNEG00000004020) #17	PPP1R12A (ENSMNEG00000033679) #18	OTOGL (ENSMNEG00000034772) #19	PTPRQ (ENSMNEG00000045562) #20	MYF6 (ENSMNEG00000019739) #21	MYF5 (ENSMNEG00000039510) #22	LIN7A (ENSMNEG00000040769) #23	ACSS3 (ENSMNEG00000030423) #24	ENSMNEG00000021297	PPFIA2 (ENSMNEG00000041825) #25	CCDC59 (ENSMNEG00000037462) #27	METTL25 (ENSMNEG00000042500) #28	TMTC2 (ENSMNEG00000028808) #29	ENSMNEG00000032829	SLC6A15 (ENSMNEG00000005563) #30	TSPAN19 (ENSMNEG00000036225)	LRRIQ1 (ENSMNEG00000037379)	ALX1 (ENSMNEG00000034993) #31	ENSMNEG00000000984	RASSF9 (ENSMNEG00000033486) #33	NTS (ENSMNEG00000040065) #34
Macaca_a	ANCESTRAL SPECIES	6	ENSGT01030000234542.b.a.a.a.b.a.a.a.b.a.a	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT01050000245239.a.a	ENSGT00940000161627.a.a.a.a.b.a.a.a.b.c.a.a.a.b	ENSGT00940000158014 #14	ENSGT00950000183030.m.a.a.b.b.a.b.a	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.b.a.a.b.a.b.c.b	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000153052.c.b.a.a.a.a.b.b.b	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00950000182767.b.b.d.hb.b.a.b.a.a.b.b
Crab-eating macaque	MODERN SPECIES	2	NAV3 (ENSMFAG00000044289) #14	ENSMFAG00000034925	ENSMFAG00000034379	ENSMFAG00000000157	SYT1 (ENSMFAG00000003495) #16	ENSMFAG00000050054	PAWR (ENSMFAG00000062333) #17	ENSMFAG00000063729	ENSMFAG00000049694	PPP1R12A (ENSMFAG00000034239) #18	OTOGL (ENSMFAG00000031786) #19	PTPRQ (ENSMFAG00000044210) #20	ENSMFAG00000052094	ENSMFAG00000058049	MYF6 (ENSMFAG00000033881) #21	MYF5 (ENSMFAG00000042044) #22	LIN7A (ENSMFAG00000040160) #23	ENSMFAG00000031214	ACSS3 (ENSMFAG00000040344) #24	PPFIA2 (ENSMFAG00000031204) #25	ENSMFAG00000049838	CCDC59 (ENSMFAG00000034303) #27	METTL25 (ENSMFAG00000036420) #28	ENSMFAG00000051090	ENSMFAG00000052001	TMTC2 (ENSMFAG00000038030) #29	ENSMFAG00000053756	ENSMFAG00000051138	ENSMFAG00000060580	ENSMFAG00000047713	ENSMFAG00000047900
Rhesus	MODERN SPECIES	2	E2F7 (ENSMMUG00000022846) #12	ENSMMUG00000059985	ENSMMUG00000055171	ENSMMUG00000060140	NAV3 (ENSMMUG00000021329) #14	ENSMMUG00000058640	ENSMMUG00000051304	ENSMMUG00000060137	SYT1 (ENSMMUG00000005530) #16	PAWR (ENSMMUG00000015179) #17	ENSMMUG00000053591	PPP1R12A (ENSMMUG00000019214) #18	OTOGL (ENSMMUG00000000121) #19	PTPRQ (ENSMMUG00000037711) #20	MYF6 (ENSMMUG00000011667) #21	MYF5 (ENSMMUG00000011669) #22	LIN7A (ENSMMUG00000011671) #23	ENSMMUG00000017463	ACSS3 (ENSMMUG00000013800) #24	ENSMMUG00000046323	PPFIA2 (ENSMMUG00000013804) #25	ENSMMUG00000050266	CCDC59 (ENSMMUG00000063005) #27	METTL25 (ENSMMUG00000002514) #28	ENSMMUG00000059068	TMTC2 (ENSMMUG00000011305) #29	ENSMMUG00000043159	ENSMMUG00000058294	SLC6A15 (ENSMMUG00000013650) #30	TSPAN19 (ENSMMUG00000042255)	LRRIQ1 (ENSMMUG00000016535)
Cercopithecinae_b	ANCESTRAL SPECIES	2	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00390000009168.hb	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000014818.g.b.a.a.a.b.b	ENSGT00940000153294.m.b.s.f	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00940000153524.b.a.a.k.a	ENSGT00950000182839.A.c #33
Olive baboon	MODERN SPECIES	19	ZDHHC17 (ENSPANG00000004050) #9	CSRP2 (ENSPANG00000023047) #10	E2F7 (ENSPANG00000004929) #12	NAV3 (ENSPANG00000007911) #14	ENSPANG00000043139	ENSPANG00000015985	ENSPANG00000040020	SYT1 (ENSPANG00000009048) #16	PAWR (ENSPANG00000009557) #17	PPP1R12A (ENSPANG00000026354) #18	ENSPANG00000047805	OTOGL (ENSPANG00000012907) #19	PTPRQ (ENSPANG00000014456) #20	ENSPANG00000005319	MYF6 (ENSPANG00000044306) #21	MYF5 (ENSPANG00000020394) #22	LIN7A (ENSPANG00000005931) #23	ACSS3 (ENSPANG00000019084) #24	PPFIA2 (ENSPANG00000019704) #25	ENSPANG00000035488	ENSPANG00000042647	ENSPANG00000049322	CCDC59 (ENSPANG00000023011) #27	METTL25 (ENSPANG00000033969) #28	ENSPANG00000032275	TMTC2 (ENSPANG00000008622) #29	ENSPANG00000049628	ENSPANG00000005733	SLC6A15 (ENSPANG00000011238) #30	LRRIQ1 (ENSPANG00000020393)	TSPAN19 (ENSPANG00000016556)
Cercopithecinae_d	ANCESTRAL SPECIES	3	ENSGT00390000009168.hb	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000163914.c.a	ENSGT00390000003133.i.a	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000014818.g.b.a.a.a.b.a	ENSGT00940000153294.m.b.s.f	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00940000153524.b.a.a.k.a	ENSGT00950000182839.A.c #33
Sooty mangabey	MODERN SPECIES	582	ENSCATG00000039522	ENSCATG00000044128	ZDHHC17 (ENSCATG00000040479) #9	CSRP2 (ENSCATG00000040566) #10	E2F7 (ENSCATG00000035481) #12	NAV3 (ENSCATG00000032040) #14	ENSCATG00000017337	ENSCATG00000040529	ENSCATG00000044466	SYT1 (ENSCATG00000033541) #16	PAWR (ENSCATG00000034935) #17	PPP1R12A (ENSCATG00000038278) #18	OTOGL (ENSCATG00000038125) #19	PTPRQ (ENSCATG00000039610) #20	MYF6 (ENSCATG00000029151) #21	MYF5 (ENSCATG00000042162) #22	LIN7A (ENSCATG00000029939) #23	ACSS3 (ENSCATG00000030914) #24	PPFIA2 (ENSCATG00000040747) #25	ENSCATG00000038856	ENSCATG00000031323	ENSCATG00000034351	CCDC59 (ENSCATG00000044760) #27	METTL25 (ENSCATG00000044852) #28	TMTC2 (ENSCATG00000040764) #29	ENSCATG00000022828	SLC6A15 (ENSCATG00000041025) #30	TSPAN19 (ENSCATG00000034141)	LRRIQ1 (ENSCATG00000037866)	ALX1 (ENSCATG00000041762) #31	ENSCATG00000038524
Drill	MODERN SPECIES	1141													OTOGL (ENSMLEG00000040646) #19	PTPRQ (ENSMLEG00000039303) #20	MYF6 (ENSMLEG00000034432) #21	MYF5 (ENSMLEG00000038211) #22	LIN7A (ENSMLEG00000020249) #23	ACSS3 (ENSMLEG00000042153) #24	ENSMLEG00000000975	PPFIA2 (ENSMLEG00000042213) #25
Rhinopithecus	ANCESTRAL SPECIES	603													ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25
Golden snub-nosed monkey	MODERN SPECIES	2447													OTOGL (ENSRROG00000003053) #19	PTPRQ (ENSRROG00000040104) #20	MYF6 (ENSRROG00000040631) #21	MYF5 (ENSRROG00000040728) #22	LIN7A (ENSRROG00000035008) #23	ACSS3 (ENSRROG00000030884) #24	PPFIA2 (ENSRROG00000012213) #25
Black snub-nosed monkey	MODERN SPECIES	485														PTPRQ (ENSRBIG00000036416) #20	MYF6 (ENSRBIG00000034023) #21	MYF5 (ENSRBIG00000011474) #22
Platyrrhini	ANCESTRAL SPECIES	6	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.u.a.a #10	ENSGT00940000154980.u.a.b #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00910000148286	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00390000014620.j	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Cebidae	ANCESTRAL SPECIES	2	ENSGT00910000147072.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.u.a.a #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00390000014620.j	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Cebidae_a	ANCESTRAL SPECIES	8	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.u.a.a #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00550000074807.d	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00390000008708.o.a	ENSGT00940000157277 #30	ENSGT00390000014620.j	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Capuchin	MODERN SPECIES	156										PAWR (ENSCCAG00000026556) #17	PPP1R12A (ENSCCAG00000027422) #18	ENSCCAG00000033086	OTOGL (ENSCCAG00000019837) #19	PTPRQ (ENSCCAG00000033930) #20	MYF6 (ENSCCAG00000032873) #21	MYF5 (ENSCCAG00000029028) #22	LIN7A (ENSCCAG00000033374) #23	ACSS3 (ENSCCAG00000035103) #24	PPFIA2 (ENSCCAG00000029694) #25	CCDC59 (ENSCCAG00000021997) #27	METTL25 (ENSCCAG00000032764) #28	ENSCCAG00000034003	TMTC2 (ENSCCAG00000037661) #29	ENSCCAG00000032890
Bolivian squirrel monkey	MODERN SPECIES	67	BBS10 (ENSSBOG00000022169) #7	OSBPL8 (ENSSBOG00000030671) #8	ZDHHC17 (ENSSBOG00000036173) #9	ENSSBOG00000014459 #10	E2F7 (ENSSBOG00000028674) #12	NAV3 (ENSSBOG00000036099) #14	ENSSBOG00000036163	ENSSBOG00000025849	SYT1 (ENSSBOG00000033271) #16	PAWR (ENSSBOG00000025731) #17	PPP1R12A (ENSSBOG00000033660) #18	ENSSBOG00000026289	OTOGL (ENSSBOG00000033681) #19	PTPRQ (ENSSBOG00000027538) #20	MYF6 (ENSSBOG00000021822) #21	MYF5 (ENSSBOG00000019536) #22	LIN7A (ENSSBOG00000030034) #23	ENSSBOG00000034028	ENSSBOG00000022040	ACSS3 (ENSSBOG00000018710) #24	PPFIA2 (ENSSBOG00000021244) #25	CCDC59 (ENSSBOG00000029711) #27	METTL25 (ENSSBOG00000025680) #28	ENSSBOG00000025592	TMTC2 (ENSSBOG00000024696) #29	ENSSBOG00000032046	ENSSBOG00000035574	SLC6A15 (ENSSBOG00000036273) #30	TSPAN19 (ENSSBOG00000018936)	LRRIQ1 (ENSSBOG00000024808)	ALX1 (ENSSBOG00000028789) #31
Marmoset	MODERN SPECIES	21	ENSCJAG00000078161	BBS10 (ENSCJAG00000001113) #7	OSBPL8 (ENSCJAG00000001055) #8	ZDHHC17 (ENSCJAG00000019075) #9	ENSCJAG00000019153 #10	E2F7 (ENSCJAG00000019162) #12	NAV3 (ENSCJAG00000019176) #14	ENSCJAG00000078124	ENSCJAG00000078194	SYT1 (ENSCJAG00000019262) #16	PAWR (ENSCJAG00000019265) #17	PPP1R12A (ENSCJAG00000019271) #18	OTOGL (ENSCJAG00000019323) #19	PTPRQ (ENSCJAG00000019332) #20	MYF6 (ENSCJAG00000081789) #21	MYF5 (ENSCJAG00000019340) #22	LIN7A (ENSCJAG00000019343) #23	ACSS3 (ENSCJAG00000019352) #24	PPFIA2 (ENSCJAG00000019370) #25	CCDC59 (ENSCJAG00000019396) #27	METTL25 (ENSCJAG00000019400) #28	TMTC2 (ENSCJAG00000019420) #29	ENSCJAG00000073753	ENSCJAG00000081141	ENSCJAG00000086215	SLC6A15 (ENSCJAG00000019425) #30	TSPAN19 (ENSCJAG00000039345)	LRRIQ1 (ENSCJAG00000019445)	ALX1 (ENSCJAG00000080722) #31	ENSCJAG00000085601	EEA1 (ENSCJAG00000019460)
Mas night monkey	MODERN SPECIES	833	ENSANAG00000028981	ENSANAG00000021237 #10	E2F7 (ENSANAG00000036545) #12	ENSANAG00000032226	NAV3 (ENSANAG00000037686) #14	ENSANAG00000023582	ENSANAG00000023157	SYT1 (ENSANAG00000025826) #16	PAWR (ENSANAG00000022396) #17	PPP1R12A (ENSANAG00000034824) #18	ENSANAG00000019658	ENSANAG00000036662	OTOGL (ENSANAG00000024695) #19	PTPRQ (ENSANAG00000035871) #20	MYF6 (ENSANAG00000024892) #21	MYF5 (ENSANAG00000023208) #22	LIN7A (ENSANAG00000032889) #23	ACSS3 (ENSANAG00000034361) #24	PPFIA2 (ENSANAG00000023020) #25	CCDC59 (ENSANAG00000033505) #27	METTL25 (ENSANAG00000035794) #28	TMTC2 (ENSANAG00000036537) #29	ENSANAG00000022029	SLC6A15 (ENSANAG00000025270) #30	ENSANAG00000032039	TSPAN19 (ENSANAG00000013117)	LRRIQ1 (ENSANAG00000027300)	ALX1 (ENSANAG00000031059) #31	RASSF9 (ENSANAG00000030253) #33	NTS (ENSANAG00000030448) #34	MGAT4C (ENSANAG00000037245) #35
Tarsier	MODERN SPECIES	4455												OTOGL (ENSTSYG00000036620) #19	ENSTSYG00000026335	PTPRQ (ENSTSYG00000027505) #20	MYF6 (ENSTSYG00000003275) #21	MYF5 (ENSTSYG00000003282) #22	ENSTSYG00000010879 #23
Strepsirrhini	ANCESTRAL SPECIES	3	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394.b #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Lemuriformes	ANCESTRAL SPECIES	1	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394.b #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Lemuriformes_a	ANCESTRAL SPECIES	190										ENSGT00940000155394.b #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Coquerels sifaka	MODERN SPECIES	654	SAT1 (ENSPCOG00000022263)	ACOT9 (ENSPCOG00000017631)	PRDX4 (ENSPCOG00000021645)	PTCHD1 (ENSPCOG00000010244)	PHEX (ENSPCOG00000025455)	ENSPCOG00000017400	MBTPS2 (ENSPCOG00000008143)	SMPX (ENSPCOG00000025800)	CNKSR2 (ENSPCOG00000014884)	SYT1 (ENSPCOG00000025512) #16	PAWR (ENSPCOG00000018957) #17	PPP1R12A (ENSPCOG00000018987) #18	OTOGL (ENSPCOG00000027646) #19	PTPRQ (ENSPCOG00000012150) #20	MYF6 (ENSPCOG00000021756) #21	MYF5 (ENSPCOG00000012709) #22
Greater bamboo lemur	MODERN SPECIES	95						PANK3 (ENSPSMG00000017197)	ENSPSMG00000017175	CPEB4 (ENSPSMG00000017067)	ENSPSMG00000016953	SYT1 (ENSPSMG00000016943) #16	PAWR (ENSPSMG00000016915) #17	PPP1R12A (ENSPSMG00000016837) #18	OTOGL (ENSPSMG00000016582) #19	PTPRQ (ENSPSMG00000016269) #20	MYF6 (ENSPSMG00000016092) #21	MYF5 (ENSPSMG00000016083) #22	LIN7A (ENSPSMG00000016071) #23	ACSS3 (ENSPSMG00000016037) #24	PPFIA2 (ENSPSMG00000015931) #25	CCDC59 (ENSPSMG00000015532) #27	METTL25 (ENSPSMG00000015523) #28	TMTC2 (ENSPSMG00000015469) #29	SLC6A15 (ENSPSMG00000015347) #30	TSPAN19 (ENSPSMG00000015246)	LRRIQ1 (ENSPSMG00000015231)
Mouse lemur	MODERN SPECIES	29	BBS10 (ENSMICG00000042947) #7	OSBPL8 (ENSMICG00000000969) #8	ENSMICG00000029525	ZDHHC17 (ENSMICG00000033453) #9	CSRP2 (ENSMICG00000047076) #10	ENSMICG00000014368	E2F7 (ENSMICG00000013872) #12	NAV3 (ENSMICG00000003403) #14	SYT1 (ENSMICG00000015517) #16	PAWR (ENSMICG00000031649) #17	ENSMICG00000032513	PPP1R12A (ENSMICG00000032335) #18	OTOGL (ENSMICG00000026871) #19	PTPRQ (ENSMICG00000038737) #20	MYF6 (ENSMICG00000004274) #21	MYF5 (ENSMICG00000036139) #22	LIN7A (ENSMICG00000033894) #23	ACSS3 (ENSMICG00000010809) #24	PPFIA2 (ENSMICG00000010822) #25	CCDC59 (ENSMICG00000041747) #27	METTL25 (ENSMICG00000027175) #28	TMTC2 (ENSMICG00000031682) #29	SLC6A15 (ENSMICG00000026324) #30	TSPAN19 (ENSMICG00000038361)	LRRIQ1 (ENSMICG00000037929)	ALX1 (ENSMICG00000032710) #31	RASSF9 (ENSMICG00000042014) #33	NTS (ENSMICG00000037863) #34	MGAT4C (ENSMICG00000037297) #35	ENSMICG00000034439	ENSMICG00000035359
Bushbaby	MODERN SPECIES	122	PHLDA1 (ENSOGAG00000010317)	NAP1L1 (ENSOGAG00000010319)	BBS10 (ENSOGAG00000025855) #7	OSBPL8 (ENSOGAG00000017084) #8	ZDHHC17 (ENSOGAG00000013994) #9	CSRP2 (ENSOGAG00000013999) #10	E2F7 (ENSOGAG00000010821) #12	ENSOGAG00000030290	NAV3 (ENSOGAG00000010604) #14	SYT1 (ENSOGAG00000009943) #16	PAWR (ENSOGAG00000027944) #17	PPP1R12A (ENSOGAG00000010740) #18	OTOGL (ENSOGAG00000030466) #19	PTPRQ (ENSOGAG00000025362) #20	MYF6 (ENSOGAG00000001038) #21	MYF5 (ENSOGAG00000001039) #22	LIN7A (ENSOGAG00000004616) #23	ACSS3 (ENSOGAG00000014813) #24	PPFIA2 (ENSOGAG00000014823) #25	ENSOGAG00000025088	CCDC59 (ENSOGAG00000004383) #27	METTL25 (ENSOGAG00000004384) #28	TMTC2 (ENSOGAG00000000477) #29	SLC6A15 (ENSOGAG00000014207) #30	LRRIQ1 (ENSOGAG00000014209)	ALX1 (ENSOGAG00000014211) #31	RASSF9 (ENSOGAG00000003208) #33	NTS (ENSOGAG00000003210) #34	MGAT4C (ENSOGAG00000003212) #35	ENSOGAG00000032440	ENSOGAG00000034474
Laurasiatheria	ANCESTRAL SPECIES	6	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Eulipotyphla	ANCESTRAL SPECIES	1068															ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22
Hedgehog	MODERN SPECIES	13857																MYF5 (ENSEEUG00000011612) #22
Common shrew	MODERN SPECIES	12722															MYF6 (ENSSARG00000008211) #21	MYF5 (ENSSARG00000008217) #22
Laurasiatheria_a	ANCESTRAL SPECIES	6	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Artiodactyla	ANCESTRAL SPECIES	6	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Suina	ANCESTRAL SPECIES	4	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Pig	MODERN SPECIES	13	ENSSSCG00000025041	ZDHHC17 (ENSSSCG00000000952) #9	CSRP2 (ENSSSCG00000000951) #10	ENSSSCG00000043521	E2F7 (ENSSSCG00000000950) #12	ENSSSCG00000044299	NAV3 (ENSSSCG00000029249) #14	ENSSSCG00000052129	ENSSSCG00000049637	SYT1 (ENSSSCG00000000948) #16	PAWR (ENSSSCG00000036560) #17	PPP1R12A (ENSSSCG00000038973) #18	OTOGL (ENSSSCG00000000943) #19	PTPRQ (ENSSSCG00000031716) #20	MYF6 (ENSSSCG00000026533) #21	MYF5 (ENSSSCG00000000937) #22	ENSSSCG00000042719	LIN7A (ENSSSCG00000040348) #23	ACSS3 (ENSSSCG00000000939) #24	PPFIA2 (ENSSSCG00000000940) #25	CCDC59 (ENSSSCG00000038987) #27	METTL25 (ENSSSCG00000000941) #28	TMTC2 (ENSSSCG00000024065) #29	ENSSSCG00000042278	SLC6A15 (ENSSSCG00000000936) #30	TSPAN19 (ENSSSCG00000040399)	LRRIQ1 (ENSSSCG00000000934)	ALX1 (ENSSSCG00000036744) #31	RASSF9 (ENSSSCG00000034948) #33	NTS (ENSSSCG00000000932) #34	MGAT4C (ENSSSCG00000032321) #35
Chacoan peccary	MODERN SPECIES	871	ENSCWAG00000005880	PHLDA1 (ENSCWAG00000005900)	NAP1L1 (ENSCWAG00000005937)	BBS10 (ENSCWAG00000006105) #7	OSBPL8 (ENSCWAG00000006143) #8	ZDHHC17 (ENSCWAG00000006304) #9	CSRP2 (ENSCWAG00000006361) #10	E2F7 (ENSCWAG00000006403) #12	NAV3 (ENSCWAG00000006671) #14	SYT1 (ENSCWAG00000007382) #16	PAWR (ENSCWAG00000007454) #17	PPP1R12A (ENSCWAG00000007564) #18	OTOGL (ENSCWAG00000007720) #19	PTPRQ (ENSCWAG00000009402) #20	MYF6 (ENSCWAG00000010168) #21	MYF5 (ENSCWAG00000010199) #22	LIN7A (ENSCWAG00000010238) #23	ACSS3 (ENSCWAG00000010300) #24	PPFIA2 (ENSCWAG00000010523) #25	CCDC59 (ENSCWAG00000013098) #27	METTL25 (ENSCWAG00000013127) #28	TMTC2 (ENSCWAG00000013168) #29
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Artiodactyla_b	ANCESTRAL SPECIES	5	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Cetacea	ANCESTRAL SPECIES	8	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000154172.ab.b	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Odontoceti	ANCESTRAL SPECIES	7	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000154172.ab.b	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Sperm whale	MODERN SPECIES	17	ENSPCTG00005009623	ENSPCTG00005009647	BBS10 (ENSPCTG00005009666) #7	OSBPL8 (ENSPCTG00005009709) #8	ZDHHC17 (ENSPCTG00005009874) #9	CSRP2 (ENSPCTG00005009938) #10	E2F7 (ENSPCTG00005009995) #12	NAV3 (ENSPCTG00005010415) #14	SYT1 (ENSPCTG00005012311) #16	PAWR (ENSPCTG00005012474) #17	PPP1R12A (ENSPCTG00005012575) #18	ENSPCTG00005012953	OTOGL (ENSPCTG00005013033) #19	PTPRQ (ENSPCTG00005015293) #20	MYF6 (ENSPCTG00005016374) #21	MYF5 (ENSPCTG00005016429) #22	LIN7A (ENSPCTG00005016469) #23	ACSS3 (ENSPCTG00005016578) #24	PPFIA2 (ENSPCTG00005017124) #25	CCDC59 (ENSPCTG00005020122) #27	METTL25 (ENSPCTG00005020146) #28	ENSPCTG00005020220	TMTC2 (ENSPCTG00005020242) #29	SLC6A15 (ENSPCTG00005020350) #30	TSPAN19 (ENSPCTG00005020436)	LRRIQ1 (ENSPCTG00005020500)	ALX1 (ENSPCTG00005020630) #31	RASSF9 (ENSPCTG00005020645) #33	NTS (ENSPCTG00005020672) #34	MGAT4C (ENSPCTG00005020711) #35	C12orf50 (ENSPCTG00005020740) #36
Odontoceti_a	ANCESTRAL SPECIES	6	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000154172.ab.b	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Dolphin	MODERN SPECIES	622														ENSTTRG00000014683 #20	MYF6 (ENSTTRG00000014689) #21	MYF5 (ENSTTRG00000014691) #22	LIN7A (ENSTTRG00000014693) #23	ACSS3 (ENSTTRG00000014696) #24	PPFIA2 (ENSTTRG00000014699) #25
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000154172.ab.b	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00390000004735.A.n	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.bb.a #10	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000154172.ab.b	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00390000004735.A.n	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Beluga whale	MODERN SPECIES	39	OSBPL8 (ENSDLEG00000007401) #8	ENSDLEG00000007371	ZDHHC17 (ENSDLEG00000007362) #9	CSRP2 (ENSDLEG00000007353) #10	ENSDLEG00000007329 #12	ENSDLEG00000007322 #12	NAV3 (ENSDLEG00000006608) #14	SYT1 (ENSDLEG00000006456) #16	ENSDLEG00000006452	PAWR (ENSDLEG00000006445) #17	ENSDLEG00000006442	PPP1R12A (ENSDLEG00000006433) #18	OTOGL (ENSDLEG00000006234) #19	PTPRQ (ENSDLEG00000006066) #20	MYF6 (ENSDLEG00000006023) #21	MYF5 (ENSDLEG00000006018) #22	LIN7A (ENSDLEG00000005973) #23	ACSS3 (ENSDLEG00000005911) #24	PPFIA2 (ENSDLEG00000005438) #25
Narwhal	MODERN SPECIES	313	BBS10 (ENSMMNG00015017120) #7	OSBPL8 (ENSMMNG00015017163) #8	ZDHHC17 (ENSMMNG00015017285) #9	ENSMMNG00015017474	CSRP2 (ENSMMNG00015017494) #10	E2F7 (ENSMMNG00015017553) #12	NAV3 (ENSMMNG00015017728) #14	SYT1 (ENSMMNG00015017994) #16	PAWR (ENSMMNG00015018035) #17	ENSMMNG00015018085	PPP1R12A (ENSMMNG00015018194) #18	ENSMMNG00015018420	OTOGL (ENSMMNG00015018567) #19	PTPRQ (ENSMMNG00015019359) #20	MYF6 (ENSMMNG00015019715) #21	MYF5 (ENSMMNG00015019736) #22	LIN7A (ENSMMNG00015019774) #23	ENSMMNG00015019830	ACSS3 (ENSMMNG00015019853) #24	PPFIA2 (ENSMMNG00015020218) #25	CCDC59 (ENSMMNG00015020720) #27	METTL25 (ENSMMNG00015020747) #28	TMTC2 (ENSMMNG00015020798) #29	FAM50A (ENSMMNG00015020820)	SLC6A15 (ENSMMNG00015020847) #30	TSPAN19 (ENSMMNG00015020883)	LRRIQ1 (ENSMMNG00015020965)	ALX1 (ENSMMNG00015020997) #31	RASSF9 (ENSMMNG00015021023) #33	NTS (ENSMMNG00015021038) #34	MGAT4C (ENSMMNG00015021064) #35
Vaquita	MODERN SPECIES	1	OSBPL8 (ENSPSNG00000010975) #8	ENSPSNG00000010941	ENSPSNG00000010920	ZDHHC17 (ENSPSNG00000010872) #9	CSRP2 (ENSPSNG00000010823) #10	E2F7 (ENSPSNG00000010547) #12	NAV3 (ENSPSNG00000009074) #14	ENSPSNG00000008562	SYT1 (ENSPSNG00000008513) #16	PAWR (ENSPSNG00000008439) #17	ENSPSNG00000008403	PPP1R12A (ENSPSNG00000008207) #18	OTOGL (ENSPSNG00000007188) #19	PTPRQ (ENSPSNG00000006652) #20	MYF6 (ENSPSNG00000006531) #21	MYF5 (ENSPSNG00000006510) #22	LIN7A (ENSPSNG00000006484) #23	ACSS3 (ENSPSNG00000006403) #24	PPFIA2 (ENSPSNG00000005685) #25	ENSPSNG00000005450 #27	METTL25 (ENSPSNG00000005420) #28	FAM50A (ENSPSNG00000005402)	TMTC2 (ENSPSNG00000005299) #29	ENSPSNG00000005260	SLC6A15 (ENSPSNG00000005229) #30	TSPAN19 (ENSPSNG00000005188)	LRRIQ1 (ENSPSNG00000005070)	ALX1 (ENSPSNG00000005010) #31	RASSF9 (ENSPSNG00000004990) #33	NTS (ENSPSNG00000004962) #34	MGAT4C (ENSPSNG00000004935) #35
Blue whale	MODERN SPECIES	1	NAP1L1 (ENSBMSG00010020766)	BBS10 (ENSBMSG00010020864) #7	OSBPL8 (ENSBMSG00010020883) #8	ZDHHC17 (ENSBMSG00010020913) #9	CSRP2 (ENSBMSG00010020929) #10	E2F7 (ENSBMSG00010020948) #12	NAV3 (ENSBMSG00010021020) #14	ENSBMSG00010021165	SYT1 (ENSBMSG00010021177) #16	PAWR (ENSBMSG00010021183) #17	PPP1R12A (ENSBMSG00010021198) #18	ENSBMSG00010021208	OTOGL (ENSBMSG00010021255) #19	PTPRQ (ENSBMSG00010007468) #20	MYF6 (ENSBMSG00010007564) #21	MYF5 (ENSBMSG00010007571) #22	LIN7A (ENSBMSG00010007592) #23	ENSBMSG00010007609	ACSS3 (ENSBMSG00010007621) #24	PPFIA2 (ENSBMSG00010007808) #25	CCDC59 (ENSBMSG00010008631) #27	METTL25 (ENSBMSG00010008637) #28	ENSBMSG00010008650	TMTC2 (ENSBMSG00010008658) #29	ENSBMSG00010008664	SLC6A15 (ENSBMSG00010008679) #30	TSPAN19 (ENSBMSG00010008692)	LRRIQ1 (ENSBMSG00010008720)	ALX1 (ENSBMSG00010008770) #31	ENSBMSG00010008780	RASSF9 (ENSBMSG00010008783) #33
Pecora	ANCESTRAL SPECIES	3	ENSGT00940000153362.a.cb	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Percora_a	ANCESTRAL SPECIES	3	ENSGT00940000153362.a.cb	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Bovidae	ANCESTRAL SPECIES	3	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00390000012446.o.b	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000013187.b	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Caprinae	ANCESTRAL SPECIES		ENSGT00440000039564.b	ENSGT00940000153362.a.cb.b	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a.n #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000013187.b	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Rambouillet Sheep	MODERN SPECIES	19	PHLDA1 (ENSOARG00020002913)	ENSOARG00020002933	OSBPL8 (ENSOARG00020003030) #8	BBS10 (ENSOARG00020003354) #7	ENSOARG00020003381	ZDHHC17 (ENSOARG00020003403) #9	CSRP2 (ENSOARG00020003468) #10	E2F7 (ENSOARG00020003529) #12	NAV3 (ENSOARG00020003813) #14	SYT1 (ENSOARG00020005626) #16	PAWR (ENSOARG00020005665) #17	PPP1R12A (ENSOARG00020005817) #18	PTPRQ (ENSOARG00020008080) #20	MYF6 (ENSOARG00020008943) #21	MYF6 (ENSOARG00020008989) #21	MYF5 (ENSOARG00020009026) #22	LIN7A (ENSOARG00020009053) #23	ACSS3 (ENSOARG00020009124) #24	PPFIA2 (ENSOARG00020009934) #25	CCDC59 (ENSOARG00020015621) #27	TMTC2 (ENSOARG00020015711) #29	SLC6A15 (ENSOARG00020007201) #30	TSPAN19 (ENSOARG00020007275)	ALX1 (ENSOARG00020007379) #31	RASSF9 (ENSOARG00020007430) #33	NTS (ENSOARG00020007471) #34	ENSOARG00020007547	MGAT4C (ENSOARG00020007579) #35	C12orf50 (ENSOARG00020007620) #36	C3H12orf29 (ENSOARG00020007796) #37	ENSOARG00020008023
Goat	MODERN SPECIES	24	BBS10 (ENSCHIG00000016567) #7	OSBPL8 (ENSCHIG00000010416) #8	ZDHHC17 (ENSCHIG00000009471) #9	CSRP2 (ENSCHIG00000025767) #10	E2F7 (ENSCHIG00000023455) #12	ENSCHIG00000017418	ENSCHIG00000009714	NAV3 (ENSCHIG00000012255) #14	ENSCHIG00000020619	SYT1 (ENSCHIG00000027174) #16	PAWR (ENSCHIG00000014049) #17	PPP1R12A (ENSCHIG00000007263) #18	OTOGL (ENSCHIG00000001357) #19	PTPRQ (ENSCHIG00000026657) #20	MYF6 (ENSCHIG00000021667) #21	MYF5 (ENSCHIG00000015029) #22	LIN7A (ENSCHIG00000003123) #23	ACSS3 (ENSCHIG00000023281) #24	PPFIA2 (ENSCHIG00000022919) #25	ENSCHIG00000005384	ENSCHIG00000025817 #27	METTL25 (ENSCHIG00000003929) #28	TMTC2 (ENSCHIG00000021548) #29	SLC6A15 (ENSCHIG00000017725) #30	TSPAN19 (ENSCHIG00000013366)	LRRIQ1 (ENSCHIG00000027155)	ALX1 (ENSCHIG00000025423) #31	RASSF9 (ENSCHIG00000024146) #33	NTS (ENSCHIG00000015085) #34	MGAT4C (ENSCHIG00000026547) #35	C12orf50 (ENSCHIG00000016372) #36
Bovinae	ANCESTRAL SPECIES	17	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00390000012446.o.b	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000013187.b	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Bos	ANCESTRAL SPECIES	2	ENSGT00940000156622 #8	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.b.a.a.a.b	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00390000012446.o.b	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000003710.c.a.b.b	ENSGT00390000006546.i #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Bos_b	ANCESTRAL SPECIES	4	ENSGT00940000156622 #8	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.b.a.a.a.b	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00390000012446.o.b	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT01030000234758.a.a.b.a.a.b.b.a.a	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000013187.b	ENSGT00390000006546.i #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00390000005003.k.b	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Hybrid Bos Indicus	MODERN SPECIES	24	ENSBIXG00005029293	OSBPL8 (ENSBIXG00005007884) #8	ZDHHC17 (ENSBIXG00005000041) #9	CSRP2 (ENSBIXG00005007979) #10	E2F7 (ENSBIXG00005008016) #12	ENSBIXG00005008045	NAV3 (ENSBIXG00005000135) #14	ENSBIXG00005008283	SYT1 (ENSBIXG00005008356) #16	PAWR (ENSBIXG00005000179) #17	ENSBIXG00005000182	PPP1R12A (ENSBIXG00005000226) #18	OTOGL (ENSBIXG00005008900) #19	PTPRQ (ENSBIXG00005009087) #20	MYF6 (ENSBIXG00005009131) #21	MYF5 (ENSBIXG00005009143) #22	LIN7A (ENSBIXG00005009155) #23	ENSBIXG00005009169	ACSS3 (ENSBIXG00005009198) #24	ENSBIXG00005009217	ENSBIXG00005006705	PPFIA2 (ENSBIXG00005009447) #25	ENSBIXG00005009547 #27	ENSBIXG00005009553	METTL25 (ENSBIXG00005009587) #28	TMTC2 (ENSBIXG00005009679) #29	ENSBIXG00005000567	SLC6A15 (ENSBIXG00005009785) #30	TSPAN19 (ENSBIXG00005009801)	LRRIQ1 (ENSBIXG00005009865)	ALX1 (ENSBIXG00005009922) #31
Cow	MODERN SPECIES	24	BBS10 (ENSBTAG00000050467) #7	OSBPL8 (ENSBTAG00000004427) #8	ZDHHC17 (ENSBTAG00000021756) #9	CSRP2 (ENSBTAG00000013406) #10	E2F7 (ENSBTAG00000016931) #12	ENSBTAG00000054109	NAV3 (ENSBTAG00000009852) #14	ENSBTAG00000054695	SYT1 (ENSBTAG00000034693) #16	PAWR (ENSBTAG00000043949) #17	ENSBTAG00000048833	PPP1R12A (ENSBTAG00000014609) #18	OTOGL (ENSBTAG00000011336) #19	PTPRQ (ENSBTAG00000026977) #20	MYF6 (ENSBTAG00000014003) #21	MYF5 (ENSBTAG00000026972) #22	LIN7A (ENSBTAG00000011367) #23	ACSS3 (ENSBTAG00000018694) #24	PPFIA2 (ENSBTAG00000003036) #25	ENSBTAG00000053526	ENSBTAG00000052152	CCDC59 (ENSBTAG00000036282) #27	METTL25 (ENSBTAG00000008382) #28	TMTC2 (ENSBTAG00000002888) #29	ENSBTAG00000014765	SLC6A15 (ENSBTAG00000018432) #30	LRRIQ1 (ENSBTAG00000027900)	TSPAN19 (ENSBTAG00000047203)	ALX1 (ENSBTAG00000014977) #31	RASSF9 (ENSBTAG00000026966) #33	NTS (ENSBTAG00000005305) #34
Bos_a	ANCESTRAL SPECIES	3	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.b.a.a.a.b	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00390000012446.o.b	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.b.a.a.b.a.a.a	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000013187.b	ENSGT00390000003710.c.a.b.b	ENSGT00390000006546.i #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34
Wild yak	MODERN SPECIES	141															MYF6 (ENSBMUG00000012075) #21	MYF5 (ENSBMUG00000012079) #22	ENSBMUG00000012090 #23
Domestic yak	MODERN SPECIES	24	ENSBGRG00000009376 #10	E2F7 (ENSBGRG00000009145) #12	ENSBGRG00000009095	ENSBGRG00000009079	ENSBGRG00000009036	NAV3 (ENSBGRG00000007767) #14	SYT1 (ENSBGRG00000007621) #16	ENSBGRG00000007603	PAWR (ENSBGRG00000007479) #17	ENSBGRG00000007448	PPP1R12A (ENSBGRG00000006560) #18	OTOGL (ENSBGRG00000005461) #19	ENSBGRG00000005290	PTPRQ (ENSBGRG00000003831) #20	MYF6 (ENSBGRG00000003786) #21	MYF5 (ENSBGRG00000003759) #22	ENSBGRG00000003736	LIN7A (ENSBGRG00000003708) #23	ENSBGRG00000003689	ACSS3 (ENSBGRG00000003619) #24	ENSBGRG00000003602	ENSBGRG00000003592	PPFIA2 (ENSBGRG00000003359) #25	CCDC59 (ENSBGRG00000003316) #27	ENSBGRG00000003305	METTL25 (ENSBGRG00000003283) #28	ENSBGRG00000003272	TMTC2 (ENSBGRG00000003210) #29	ENSBGRG00000003173	ENSBGRG00000003156	SLC6A15 (ENSBGRG00000003135) #30
American bison	MODERN SPECIES	3377										SYT1 (ENSBBBG00000005031) #16	PAWR (ENSBBBG00000006786) #17	PPP1R12A (ENSBBBG00000020255) #18	OTOGL (ENSBBBG00000020070) #19	PTPRQ (ENSBBBG00000005139) #20	MYF6 (ENSBBBG00000007672) #21	MYF5 (ENSBBBG00000005327) #22	LIN7A (ENSBBBG00000019615) #23	ACSS3 (ENSBBBG00000019602) #24	PPFIA2 (ENSBBBG00000006966) #25	ENSBBBG00000004945	CCDC59 (ENSBBBG00000019197) #27	METTL25 (ENSBBBG00000004939) #28	TMTC2 (ENSBBBG00000009162) #29	SLC6A15 (ENSBBBG00000004924) #30	TSPAN19 (ENSBBBG00000019123)	LRRIQ1 (ENSBBBG00000004903)	ALX1 (ENSBBBG00000004860) #31	RASSF9 (ENSBBBG00000019025) #33	NTS (ENSBBBG00000019020) #34	MGAT4C (ENSBBBG00000004848) #35	ENSBBBG00000004839
Siberian musk deer	MODERN SPECIES	162									NAV3 (ENSMMSG00000008114) #14	SYT1 (ENSMMSG00000009031) #16	PAWR (ENSMMSG00000009120) #17	PPP1R12A (ENSMMSG00000009175) #18	OTOGL (ENSMMSG00000009620) #19	PTPRQ (ENSMMSG00000010710) #20	MYF6 (ENSMMSG00000011253) #21	MYF5 (ENSMMSG00000011275) #22	LIN7A (ENSMMSG00000011300) #23	ACSS3 (ENSMMSG00000011333) #24	ENSMMSG00000011493	PPFIA2 (ENSMMSG00000011641) #25	CCDC59 (ENSMMSG00000013247) #27	METTL25 (ENSMMSG00000013268) #28	TMTC2 (ENSMMSG00000013292) #29	SLC6A15 (ENSMMSG00000013333) #30	TSPAN19 (ENSMMSG00000013408)	LRRIQ1 (ENSMMSG00000013457)	ALX1 (ENSMMSG00000013694) #31	RASSF9 (ENSMMSG00000013706) #33	NTS (ENSMMSG00000013716) #34	MGAT4C (ENSMMSG00000013742) #35	ENSMMSG00000013762
Yarkand deer	MODERN SPECIES	22	OSBPL8 (ENSCHYG00000008637) #8	ZDHHC17 (ENSCHYG00000009052) #9	CSRP2 (ENSCHYG00000009422) #10	ENSCHYG00000009520	E2F7 (ENSCHYG00000009596) #12	ENSCHYG00000009932	NAV3 (ENSCHYG00000010069) #14	ENSCHYG00000011512 ##13	SYT1 (ENSCHYG00000011518) #16	PAWR (ENSCHYG00000011616) #17	ENSCHYG00000011841	PPP1R12A (ENSCHYG00000011940) #18	OTOGL (ENSCHYG00000013254) #19	PTPRQ (ENSCHYG00000015685) #20	MYF6 (ENSCHYG00000017934) #21	MYF5 (ENSCHYG00000018006) #22	LIN7A (ENSCHYG00000018063) #23	ACSS3 (ENSCHYG00000018161) #24	PPFIA2 (ENSCHYG00000018601) #25	ENSCHYG00000021532	CCDC59 (ENSCHYG00000021567) #27	METTL25 (ENSCHYG00000021623) #28	TMTC2 (ENSCHYG00000021769) #29	SLC6A15 (ENSCHYG00000021957) #30	TSPAN19 (ENSCHYG00000022031)	LRRIQ1 (ENSCHYG00000022133)	ALX1 (ENSCHYG00000022696) #31	RASSF9 (ENSCHYG00000022760) #33	NTS (ENSCHYG00000022786) #34	MGAT4C (ENSCHYG00000022826) #35	C12orf50 (ENSCHYG00000022875) #36
Camelidae	ANCESTRAL SPECIES	39	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Alpaca	MODERN SPECIES	1669													ENSVPAG00000001924	ENSVPAG00000001925 #20	MYF6 (ENSVPAG00000001926) #21	MYF5 (ENSVPAG00000001927) #22	LIN7A (ENSVPAG00000001928) #23	ACSS3 (ENSVPAG00000001929) #24	PPFIA2 (ENSVPAG00000001930) #25	CCDC59 (ENSVPAG00000001931) #27	METTL25 (ENSVPAG00000001932) #28
Arabian camel	MODERN SPECIES	3	ENSCDRG00005017029	PHLDA1 (ENSCDRG00005016995)	NAP1L1 (ENSCDRG00005016698)	BBS10 (ENSCDRG00005016659) #7	OSBPL8 (ENSCDRG00005016392) #8	ZDHHC17 (ENSCDRG00005016120) #9	CSRP2 (ENSCDRG00005016043) #10	E2F7 (ENSCDRG00005015968) #12	NAV3 (ENSCDRG00005014880) #14	SYT1 (ENSCDRG00005014660) #16	PAWR (ENSCDRG00005014596) #17	PPP1R12A (ENSCDRG00005012542) #18	OTOGL (ENSCDRG00005010509) #19	PTPRQ (ENSCDRG00005009356) #20	MYF6 (ENSCDRG00005009281) #21	MYF5 (ENSCDRG00005009235) #22	LIN7A (ENSCDRG00005009181) #23	ACSS3 (ENSCDRG00005008842) #24	PPFIA2 (ENSCDRG00005005786) #25	CCDC59 (ENSCDRG00005005635) #27	METTL25 (ENSCDRG00005005578) #28	TMTC2 (ENSCDRG00005005499) #29	SLC6A15 (ENSCDRG00005005426) #30	TSPAN19 (ENSCDRG00005005374)	LRRIQ1 (ENSCDRG00005005175)	ALX1 (ENSCDRG00005005138) #31	RASSF9 (ENSCDRG00005005130) #33	NTS (ENSCDRG00005005109) #34	MGAT4C (ENSCDRG00005005093) #35	C12orf50 (ENSCDRG00005021566) #36	C12orf29 (ENSCDRG00005021555) #37
Laurasiatheria_b	ANCESTRAL SPECIES	6	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Carnivora	ANCESTRAL SPECIES	3	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Felidae	ANCESTRAL SPECIES	2	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Panthera	ANCESTRAL SPECIES		ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Panthera_a	ANCESTRAL SPECIES	12	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
leopard	MODERN SPECIES	27	ENSPPRG00000000117	BBS10 (ENSPPRG00000022774) #7	OSBPL8 (ENSPPRG00000023047) #8	ENSPPRG00000023878	ZDHHC17 (ENSPPRG00000024071) #9	CSRP2 (ENSPPRG00000024205) #10	E2F7 (ENSPPRG00000024442) #12	NAV3 (ENSPPRG00000022007) #14	SYT1 (ENSPPRG00000014210) #16	PAWR (ENSPPRG00000013959) #17	ENSPPRG00000013642	PPP1R12A (ENSPPRG00000012756) #18	OTOGL (ENSPPRG00000007761) #19	PTPRQ (ENSPPRG00000005300) #20	MYF6 (ENSPPRG00000003909) #21	MYF5 (ENSPPRG00000003820) #22	LIN7A (ENSPPRG00000003439) #23	ACSS3 (ENSPPRG00000003248) #24	PPFIA2 (ENSPPRG00000001816) #25	ENSPPRG00000024977	CCDC59 (ENSPPRG00000022500) #27	METTL25 (ENSPPRG00000020885) #28	TMTC2 (ENSPPRG00000018820) #29
lion	MODERN SPECIES	7	PHLDA1 (ENSPLOG00000001933)	NAP1L1 (ENSPLOG00000001982)	BBS10 (ENSPLOG00000002053) #7	OSBPL8 (ENSPLOG00000002092) #8	ZDHHC17 (ENSPLOG00000002249) #9	CSRP2 (ENSPLOG00000002279) #10	E2F7 (ENSPLOG00000002314) #12	NAV3 (ENSPLOG00000002454) #14	ENSPLOG00000002650	SYT1 (ENSPLOG00000002662) #16	PAWR (ENSPLOG00000002686) #17	PPP1R12A (ENSPLOG00000002780) #18	OTOGL (ENSPLOG00000003151) #19	PTPRQ (ENSPLOG00000003543) #20	MYF6 (ENSPLOG00000003667) #21	MYF5 (ENSPLOG00000003675) #22	LIN7A (ENSPLOG00000003686) #23	ACSS3 (ENSPLOG00000003703) #24	PPFIA2 (ENSPLOG00000003973) #25	CCDC59 (ENSPLOG00000004335) #27	METTL25 (ENSPLOG00000004346) #28	TMTC2 (ENSPLOG00000004411) #29	SLC6A15 (ENSPLOG00000004444) #30	TSPAN19 (ENSPLOG00000004469)	ENSPLOG00000004490	ALX1 (ENSPLOG00000004563) #31	RASSF9 (ENSPLOG00000004571) #33	NTS (ENSPLOG00000004580) #34	MGAT4C (ENSPLOG00000004588) #35	ENSPLOG00000004594	C12orf50 (ENSPLOG00000004616) #36
Tiger	MODERN SPECIES	285	GLIPR1 (ENSPTIG00000010519)	KRR1 (ENSPTIG00000009202)	NAP1L1 (ENSPTIG00000003186)	BBS10 (ENSPTIG00000020383) #7	OSBPL8 (ENSPTIG00000019983) #8	ZDHHC17 (ENSPTIG00000019755) #9	CSRP2 (ENSPTIG00000019308) #10	E2F7 (ENSPTIG00000016920) #12	NAV3 (ENSPTIG00000013673) #14	SYT1 (ENSPTIG00000013094) #16	PAWR (ENSPTIG00000012722) #17	PPP1R12A (ENSPTIG00000003820) #18	OTOGL (ENSPTIG00000017536) #19	PTPRQ (ENSPTIG00000014182) #20	MYF6 (ENSPTIG00000014009) #21	MYF5 (ENSPTIG00000013849) #22	LIN7A (ENSPTIG00000013465) #23	ACSS3 (ENSPTIG00000013083) #24	PPFIA2 (ENSPTIG00000008257) #25
Cat	MODERN SPECIES	238	ENSFCAG00000050261	PHLDA1 (ENSFCAG00000032023)	NAP1L1 (ENSFCAG00000000279)	OSBPL8 (ENSFCAG00000027470) #8	ZDHHC17 (ENSFCAG00000027034) #9	CSRP2 (ENSFCAG00000006548) #10	E2F7 (ENSFCAG00000010756) #12	NAV3 (ENSFCAG00000013128) #14	ENSFCAG00000048215	SYT1 (ENSFCAG00000024865) #16	PAWR (ENSFCAG00000026300) #17	PPP1R12A (ENSFCAG00000027965) #18	OTOGL (ENSFCAG00000022141) #19	PTPRQ (ENSFCAG00000026313) #20	MYF6 (ENSFCAG00000015010) #21	MYF5 (ENSFCAG00000015011) #22	LIN7A (ENSFCAG00000015014) #23	ACSS3 (ENSFCAG00000012992) #24	PPFIA2 (ENSFCAG00000012993) #25	CCDC59 (ENSFCAG00000028462) #27	METTL25 (ENSFCAG00000013377) #28	ENSFCAG00000035513	TMTC2 (ENSFCAG00000024338) #29	SLC6A15 (ENSFCAG00000029283) #30	TSPAN19 (ENSFCAG00000025693)	LRRIQ1 (ENSFCAG00000031743)	ALX1 (ENSFCAG00000034933) #31	RASSF9 (ENSFCAG00000006978) #33	NTS (ENSFCAG00000031116) #34	MGAT4C (ENSFCAG00000011896) #35	ENSFCAG00000051429
Caniformia	ANCESTRAL SPECIES	20	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Canidae	ANCESTRAL SPECIES	12	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT01090000260040.a.a.a.c.b	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00940000155052.e.b.b.c.a
Canis_lupus	ANCESTRAL SPECIES	16	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713.q #12	ENSGT00940000158890.p.a.f	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT01090000260040.a.a.a.c.b	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00940000155052.e.b.b.c.a
Dog	MODERN SPECIES	6	OSBPL8 (ENSCAFG00845006103) #7	OSBPL8 (ENSCAFG00845006249) #8	ZDHHC17 (ENSCAFG00845006644) #9	ENSCAFG00845006746 #10	E2F7 (ENSCAFG00845006897) #12	ENSCAFG00845007259	NAV3 (ENSCAFG00845007345) #14	SYT1 (ENSCAFG00845007651) #16	PAWR (ENSCAFG00845007786) #17	PPP1R12A (ENSCAFG00845007952) #18	ENSCAFG00845008317	ENSCAFG00845008343	OTOGL (ENSCAFG00845008423) #19	PTPRQ (ENSCAFG00845008887) #20	MYF6 (ENSCAFG00845009704) #21	ENSCAFG00845009734 #22	LIN7A (ENSCAFG00845009762) #23	ACSS3 (ENSCAFG00845009887) #24	PPFIA2 (ENSCAFG00845010311) #25	CCDC59 (ENSCAFG00845011151) #27	METTL25 (ENSCAFG00845011219) #28	TMTC2 (ENSCAFG00845011393) #29	SLC6A15 (ENSCAFG00845011599) #30	TSPAN19 (ENSCAFG00845011710)	LRRIQ1 (ENSCAFG00845011806)	ALX1 (ENSCAFG00845012248) #31	RASSF9 (ENSCAFG00845012311) #33	ENSCAFG00845012341	NTS (ENSCAFG00845012392) #34	MGAT4C (ENSCAFG00845012439) #35	ENSCAFG00845016446
Dingo	MODERN SPECIES	277	OSBPL8 (ENSCAFG00020015356) #8	ZDHHC17 (ENSCAFG00020015453) #9	CSRP2 (ENSCAFG00020015512) #10	ENSCAFG00020015518 #12	ENSCAFG00020015522 #12	ENSCAFG00020015528	ENSCAFG00020015535	NAV3 (ENSCAFG00020015546) #14	ENSCAFG00020015601	SYT1 (ENSCAFG00020015603) #16	PAWR (ENSCAFG00020015607) #17	PPP1R12A (ENSCAFG00020015626) #18	OTOGL (ENSCAFG00020015840) #19	PTPRQ (ENSCAFG00020015957) #20	MYF6 (ENSCAFG00020016005) #21	MYF5 (ENSCAFG00020016010) #22	LIN7A (ENSCAFG00020016013) #23	ACSS3 (ENSCAFG00020016033) #24	PPFIA2 (ENSCAFG00020016113) #25	CCDC59 (ENSCAFG00020016153) #27	METTL25 (ENSCAFG00020016154) #28	TMTC2 (ENSCAFG00020016159) #29	ENSCAFG00020016180	SLC6A15 (ENSCAFG00020016183) #30	TSPAN19 (ENSCAFG00020016187)	LRRIQ1 (ENSCAFG00020016192)	ALX1 (ENSCAFG00020016217) #31	RASSF9 (ENSCAFG00020016220) #33	ENSCAFG00020016221	NTS (ENSCAFG00020016223) #34	MGAT4C (ENSCAFG00020016230) #35
Red fox	MODERN SPECIES	9	ENSVVUG00000009581	NAP1L1 (ENSVVUG00000009610)	BBS10 (ENSVVUG00000009650) #7	OSBPL8 (ENSVVUG00000009692) #8	ZDHHC17 (ENSVVUG00000009811) #9	CSRP2 (ENSVVUG00000009828) #10	E2F7 (ENSVVUG00000009839) #12	NAV3 (ENSVVUG00000009882) #14	SYT1 (ENSVVUG00000009998) #16	PAWR (ENSVVUG00000010028) #17	PPP1R12A (ENSVVUG00000010043) #18	OTOGL (ENSVVUG00000010103) #19	ENSVVUG00000010366	PTPRQ (ENSVVUG00000010403) #20	MYF6 (ENSVVUG00000010529) #21	ENSVVUG00000010537 #22	LIN7A (ENSVVUG00000010554) #23	ACSS3 (ENSVVUG00000010570) #24	PPFIA2 (ENSVVUG00000010745) #25	ENSVVUG00000010950	CCDC59 (ENSVVUG00000010954) #27	METTL25 (ENSVVUG00000010971) #28	TMTC2 (ENSVVUG00000011020) #29	SLC6A15 (ENSVVUG00000011094) #30	ENSVVUG00000011115 #26	TSPAN19 (ENSVVUG00000011198)	LRRIQ1 (ENSVVUG00000011218)	ALX1 (ENSVVUG00000011346) #31	ENSVVUG00000011364	NTS (ENSVVUG00000011394) #34	MGAT4C (ENSVVUG00000011397) #35
Caniformia_b	ANCESTRAL SPECIES	18	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Ursidae	ANCESTRAL SPECIES	13	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Ursus	ANCESTRAL SPECIES	260											ENSGT00940000155394 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25
Polar bear	MODERN SPECIES	410											SYT1 (ENSUMAG00000004449) #16	PPP1R12A (ENSUMAG00000004409) #18	OTOGL (ENSUMAG00000004235) #19	PTPRQ (ENSUMAG00000004116) #20	MYF6 (ENSUMAG00000004099) #21	MYF5 (ENSUMAG00000004083) #22	LIN7A (ENSUMAG00000004070) #23	ACSS3 (ENSUMAG00000003597) #24	PPFIA2 (ENSUMAG00000003393) #25
American black bear	MODERN SPECIES	3995															MYF6 (ENSUAMG00000017169) #21	MYF5 (ENSUAMG00000017165) #22
Giant Panda	MODERN SPECIES	6	PHLDA1 (ENSAMEG00000006460)	NAP1L1 (ENSAMEG00000006463)	BBS10 (ENSAMEG00000006510) #7	OSBPL8 (ENSAMEG00000006513) #8	ZDHHC17 (ENSAMEG00000006600) #9	CSRP2 (ENSAMEG00000006632) #10	E2F7 (ENSAMEG00000007247) #12	ENSAMEG00000024301	NAV3 (ENSAMEG00000006673) #14	SYT1 (ENSAMEG00000013376) #16	PAWR (ENSAMEG00000013370) #17	PPP1R12A (ENSAMEG00000013280) #18	OTOGL (ENSAMEG00000013267) #19	PTPRQ (ENSAMEG00000013219) #20	MYF6 (ENSAMEG00000027013) #21	MYF5 (ENSAMEG00000013193) #22	LIN7A (ENSAMEG00000013191) #23	ACSS3 (ENSAMEG00000013162) #24	PPFIA2 (ENSAMEG00000013096) #25	CCDC59 (ENSAMEG00000016875) #27	METTL25 (ENSAMEG00000016877) #28	TMTC2 (ENSAMEG00000016881) #29	SLC6A15 (ENSAMEG00000009013) #30	TSPAN19 (ENSAMEG00000009009)	LRRIQ1 (ENSAMEG00000024972)	ALX1 (ENSAMEG00000009049) #31	RASSF9 (ENSAMEG00000006110) #33	NTS (ENSAMEG00000006112) #34	MGAT4C (ENSAMEG00000006123) #35	C12orf50 (ENSAMEG00000002419) #36	C12orf29 (ENSAMEG00000002394) #37
Mustelinae	ANCESTRAL SPECIES	4	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215.b.a #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Ferret	MODERN SPECIES	546													ENSMPUG00000004956 #20	ENSMPUG00000004951 #20	MYF6 (ENSMPUG00000004945) #21	MYF5 (ENSMPUG00000004935) #22	LIN7A (ENSMPUG00000004898) #23	ACSS3 (ENSMPUG00000004881) #24	ENSMPUG00000004817 #25
American mink	MODERN SPECIES	22	ENSNVIG00000003110	BBS10 (ENSNVIG00000003073) #7	OSBPL8 (ENSNVIG00000002847) #8	ZDHHC17 (ENSNVIG00000002801) #9	ENSNVIG00000002763 #10	E2F7 (ENSNVIG00000002695) #12	NAV3 (ENSNVIG00000002412) #14	ENSNVIG00000002371	SYT1 (ENSNVIG00000002313) #16	PAWR (ENSNVIG00000002283) #17	PPP1R12A (ENSNVIG00000001940) #18	ENSNVIG00000001919	OTOGL (ENSNVIG00000001579) #19	PTPRQ (ENSNVIG00000001320) #20	MYF6 (ENSNVIG00000001298) #21	MYF5 (ENSNVIG00000001283) #22	LIN7A (ENSNVIG00000001269) #23	ACSS3 (ENSNVIG00000001229) #24	PPFIA2 (ENSNVIG00000000848) #25	TAP26 (ENSNVIG00000000828) #27	METTL25 (ENSNVIG00000000819) #28	TMTC2 (ENSNVIG00000000786) #29	ENSNVIG00000000773	S6A15 (ENSNVIG00000000728) #30	TSN19 (ENSNVIG00000000703)	LRRIQ1 (ENSNVIG00000000618)	ALX1 (ENSNVIG00000000603) #31	RASSF9 (ENSNVIG00000000592) #33	NEUT (ENSNVIG00000000561) #34	MGT4C (ENSNVIG00000000536) #35	ENSNVIG00000000519
Laurasiatheria_c	ANCESTRAL SPECIES	5	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Chiroptera	ANCESTRAL SPECIES	4	ENSGT00390000018775	ENSGT00940000167051	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Microchiroptera	ANCESTRAL SPECIES	2	ENSGT00390000018775	ENSGT00940000167051	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Microbat	MODERN SPECIES	946	BBS10 (ENSMLUG00000001850) #7	OSBPL8 (ENSMLUG00000005046) #8	ENSMLUG00000029930	ENSMLUG00000003587	ZDHHC17 (ENSMLUG00000002375) #9	CSRP2 (ENSMLUG00000002384) #10	E2F7 (ENSMLUG00000012116) #12	NAV3 (ENSMLUG00000010374) #14	ENSMLUG00000027140	SYT1 (ENSMLUG00000005752) #16	ENSMLUG00000005757 #17	PPP1R12A (ENSMLUG00000005477) #18	OTOGL (ENSMLUG00000005553) #19	PTPRQ (ENSMLUG00000006091) #20	MYF6 (ENSMLUG00000004940) #21	MYF5 (ENSMLUG00000004943) #22	LIN7A (ENSMLUG00000001526) #23	ACSS3 (ENSMLUG00000001527) #24	PPFIA2 (ENSMLUG00000001537) #25	CCDC59 (ENSMLUG00000008071) #27	METTL25 (ENSMLUG00000008084) #28	TMTC2 (ENSMLUG00000010233) #29	SLC6A15 (ENSMLUG00000011461) #30	TSPAN19 (ENSMLUG00000030562)	ALX1 (ENSMLUG00000008586) #31	RASSF9 (ENSMLUG00000008746) #33	NTS (ENSMLUG00000008733) #34	ENSMLUG00000022318	MGAT4C (ENSMLUG00000012722) #35	LYNX1 (ENSMLUG00000028919)	C12orf50 (ENSMLUG00000011631) #36
Greater horseshoe bat	MODERN SPECIES	1	ENSRFEG00010004593	ENSRFEG00010004601	NAP1L1 (ENSRFEG00010004645)	BBS10 (ENSRFEG00010004681) #7	OSBPL8 (ENSRFEG00010006253) #8	ZDHHC17 (ENSRFEG00010006316) #9	CSRP2 (ENSRFEG00010006389) #10	E2F7 (ENSRFEG00010006442) #12	NAV3 (ENSRFEG00010006668) #14	SYT1 (ENSRFEG00010007403) #16	PAWR (ENSRFEG00010007574) #17	PPP1R12A (ENSRFEG00010007686) #18	OTOGL (ENSRFEG00010007970) #19	PTPRQ (ENSRFEG00010009562) #20	MYF6 (ENSRFEG00010010368) #21	MYF5 (ENSRFEG00010010395) #22	LIN7A (ENSRFEG00010010463) #23	ACSS3 (ENSRFEG00010010509) #24	PPFIA2 (ENSRFEG00010011014) #25	CCDC59 (ENSRFEG00010014412) #27	METTL25 (ENSRFEG00010014462) #28	TMTC2 (ENSRFEG00010014525) #29	ENSRFEG00010014611	SLC6A15 (ENSRFEG00010014671) #30	TSPAN19 (ENSRFEG00010014831)	LRRIQ1 (ENSRFEG00010014978)	ALX1 (ENSRFEG00010015730) #31	RASSF9 (ENSRFEG00010015800) #33	NTS (ENSRFEG00010015856) #34	MGAT4C (ENSRFEG00010015934) #35	C12orf50 (ENSRFEG00010016011) #36
Megabat	MODERN SPECIES	899														ENSPVAG00000003333 #20	MYF6 (ENSPVAG00000003335) #21	MYF5 (ENSPVAG00000003336) #22	LIN7A (ENSPVAG00000003338) #23
Equus	ANCESTRAL SPECIES	21	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Donkey	MODERN SPECIES	11	KRR1 (ENSEASG00005021952)	PHLDA1 (ENSEASG00005027836)	NAP1L1 (ENSEASG00005021946)	BBS10 (ENSEASG00005021945) #7	OSBPL8 (ENSEASG00005021942) #8	ZDHHC17 (ENSEASG00005021939) #9	ENSEASG00005021936 #10	E2F7 (ENSEASG00005021935) #12	NAV3 (ENSEASG00005021551) #14	SYT1 (ENSEASG00005021375) #16	PAWR (ENSEASG00005033077) #17	PPP1R12A (ENSEASG00005021353) #18	OTOGL (ENSEASG00005021304) #19	PTPRQ (ENSEASG00005021271) #20	MYF6 (ENSEASG00005021268) #21	MYF5 (ENSEASG00005021266) #22	LIN7A (ENSEASG00005021265) #23	ENSEASG00005024557	ACSS3 (ENSEASG00005021261) #24	PPFIA2 (ENSEASG00005021241) #25	ENSEASG00005011113	CCDC59 (ENSEASG00005021237) #27	METTL25 (ENSEASG00005021236) #28	TMTC2 (ENSEASG00005021228) #29	SLC6A15 (ENSEASG00005021226) #30	TSPAN19 (ENSEASG00005021223)	LRRIQ1 (ENSEASG00005021215)	ALX1 (ENSEASG00005021209) #31	RASSF9 (ENSEASG00005030833) #33	ENSEASG00005027182 #34	ENSEASG00005021205
Atlantogenata	ANCESTRAL SPECIES	16	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Afrotheria	ANCESTRAL SPECIES	8	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37	ENSGT00730000111039.C
Afrotheria_a	ANCESTRAL SPECIES	8	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37	ENSGT00730000111039.C
Elephant	MODERN SPECIES	196	ENSLAFG00000008030	NAP1L1 (ENSLAFG00000005711)	BBS10 (ENSLAFG00000009397) #7	OSBPL8 (ENSLAFG00000009398) #8	ZDHHC17 (ENSLAFG00000006732) #9	CSRP2 (ENSLAFG00000006735) #10	ENSLAFG00000028909	E2F7 (ENSLAFG00000017902) #12	NAV3 (ENSLAFG00000001793) #14	SYT1 (ENSLAFG00000013359) #16	ENSLAFG00000007186 #17	PPP1R12A (ENSLAFG00000014619) #18	ENSLAFG00000016020 #19	PTPRQ (ENSLAFG00000009382) #20	MYF6 (ENSLAFG00000016476) #21	MYF5 (ENSLAFG00000016473) #22	LIN7A (ENSLAFG00000014801) #23	ACSS3 (ENSLAFG00000011051) #24	PPFIA2 (ENSLAFG00000011055) #25	CCDC59 (ENSLAFG00000015368) #27	METTL25 (ENSLAFG00000015370) #28	TMTC2 (ENSLAFG00000018670) #29	ENSLAFG00000029547	SLC6A15 (ENSLAFG00000006073) #30	ENSLAFG00000020855	ALX1 (ENSLAFG00000013544) #31	RASSF9 (ENSLAFG00000028247) #33	NTS (ENSLAFG00000005894) #34	MGAT4C (ENSLAFG00000007280) #35	C12orf50 (ENSLAFG00000005231) #36	C12orf29 (ENSLAFG00000013286) #37
Hyrax	MODERN SPECIES	969															MYF6 (ENSPCAG00000001692) #21	MYF5 (ENSPCAG00000001722) #22
Tenrec	MODERN SPECIES	16487															ENSETEG00000011256 #21	MYF5 (ENSETEG00000011255) #22
Xenarthra	ANCESTRAL SPECIES	724													ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25
Armadillo	MODERN SPECIES	1911													OTOGL (ENSDNOG00000036627) #19	PTPRQ (ENSDNOG00000031827) #20	MYF6 (ENSDNOG00000019387) #21	MYF5 (ENSDNOG00000034747) #22	LIN7A (ENSDNOG00000024299) #23	ACSS3 (ENSDNOG00000015337) #24	PPFIA2 (ENSDNOG00000015350) #25
Sloth	MODERN SPECIES	13029																MYF5 (ENSCHOG00000008319) #22
Marsupialia	ANCESTRAL SPECIES	11	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.k	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37	ENSGT00730000111039.C
Opossum	MODERN SPECIES	7	ENSMODG00000044376	ENSMODG00000020456	ENSMODG00000020458 #7	OSBPL8 (ENSMODG00000020459) #8	ENSMODG00000048422 #9	ENSMODG00000020464 #10	E2F7 (ENSMODG00000020465) #12	NAV3 (ENSMODG00000020466) #14	SYT1 (ENSMODG00000020467) #16	PAWR (ENSMODG00000020468) #17	PPP1R12A (ENSMODG00000020471) #18	ENSMODG00000025012	OTOGL (ENSMODG00000020473) #19	PTPRQ (ENSMODG00000020476) #20	MYF6 (ENSMODG00000039074) #21	MYF5 (ENSMODG00000020478) #22	LIN7A (ENSMODG00000020479) #23	ENSMODG00000037278	ACSS3 (ENSMODG00000020480) #24	ENSMODG00000020481 #25	ENSMODG00000020484 #27	METTL25 (ENSMODG00000020485) #28	TMTC2 (ENSMODG00000020487) #29	ENSMODG00000020488	SLC6A15 (ENSMODG00000020492) #30	ALX1 (ENSMODG00000020494) #31	ENSMODG00000041685	RASSF9 (ENSMODG00000020496) #33	NTS (ENSMODG00000020497) #34	MGAT4C (ENSMODG00000047285) #35	C12orf50 (ENSMODG00000020505) #36
Marsupialia_b	ANCESTRAL SPECIES	13	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.k	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37	ENSGT00730000111039.C
Diprotodontia	ANCESTRAL SPECIES	8	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.k	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37	ENSGT00730000111039.C
Diprotodontia_a	ANCESTRAL SPECIES	8	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.k	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37	ENSGT00730000111039.C
koala	MODERN SPECIES	51					ZDHHC17 (ENSPCIG00000005890) #9	CSRP2 (ENSPCIG00000005894) #10	E2F7 (ENSPCIG00000025823) #12	NAV3 (ENSPCIG00000025666) #14	ENSPCIG00000026362	SYT1 (ENSPCIG00000032719) #16	PAWR (ENSPCIG00000026365) #17	PPP1R12A (ENSPCIG00000026366) #18	OTOGL (ENSPCIG00000026368) #19	PTPRQ (ENSPCIG00000029148) #20	MYF6 (ENSPCIG00000029149) #21	MYF5 (ENSPCIG00000029150) #22	LIN7A (ENSPCIG00000029151) #23	ACSS3 (ENSPCIG00000035215) #24	PPFIA2 (ENSPCIG00000024777) #25	CCDC59 (ENSPCIG00000007808) #27	METTL25 (ENSPCIG00000007809) #28	TMTC2 (ENSPCIG00000032378) #29	ENSPCIG00000011311	SLC6A15 (ENSPCIG00000027156) #30	ENSPCIG00000009153	ALX1 (ENSPCIG00000021266) #31	RASSF9 (ENSPCIG00000002684) #33	NTS (ENSPCIG00000009584) #34	MGAT4C (ENSPCIG00000034460) #35	C12orf50 (ENSPCIG00000000703) #36	C12orf29 (ENSPCIG00000000738) #37
Common wonbat	MODERN SPECIES	1095	ZDHHC17 (ENSVURG00010002037) #9	CSRP2 (ENSVURG00010002008) #10	E2F7 (ENSVURG00010001992) #12	ENSVURG00010001969	ENSVURG00010001942	ENSVURG00010001934	NAV3 (ENSVURG00010001745) #14	ENSVURG00010001638	ENSVURG00010001581	SYT1 (ENSVURG00010001565) #16	PAWR (ENSVURG00010001479) #17	PPP1R12A (ENSVURG00010001421) #18	OTOGL (ENSVURG00010001281) #19	PTPRQ (ENSVURG00010001162) #20	MYF6 (ENSVURG00010001122) #21	MYF5 (ENSVURG00010001088) #22	LIN7A (ENSVURG00010001078) #23	ACSS3 (ENSVURG00010000986) #24	PPFIA2 (ENSVURG00010000931) #25	CCDC59 (ENSVURG00010000865) #27	METTL25 (ENSVURG00010000829) #28	TMTC2 (ENSVURG00010000692) #29	ENSVURG00010000644	ENSVURG00010000614	ENSVURG00010000610	SLC6A15 (ENSVURG00010000556) #30	ENSVURG00010000506	ALX1 (ENSVURG00010000474) #31	RASSF9 (ENSVURG00010000436) #33	NTS (ENSVURG00010015898) #34	MGAT4C (ENSVURG00010015889) #35
Wallaby	MODERN SPECIES	1972															MYF6 (ENSMEUG00000010618) #21	MYF5 (ENSMEUG00000010628) #22
Tasmanian devil	MODERN SPECIES	4	KRR1 (ENSSHAG00000001646)	ENSSHAG00000031318	NAP1L1 (ENSSHAG00000002304)	BBS10 (ENSSHAG00000001800) #7	OSBPL8 (ENSSHAG00000023268) #8	ZDHHC17 (ENSSHAG00000022371) #9	CSRP2 (ENSSHAG00000005571) #10	E2F7 (ENSSHAG00000002919) #12	NAV3 (ENSSHAG00000001971) #14	SYT1 (ENSSHAG00000009436) #16	ENSSHAG00000022708 #17	PPP1R12A (ENSSHAG00000005280) #18	OTOGL (ENSSHAG00000010191) #19	PTPRQ (ENSSHAG00000022062) #20	MYF6 (ENSSHAG00000013331) #21	MYF5 (ENSSHAG00000013391) #22	LIN7A (ENSSHAG00000029974) #23	ENSSHAG00000025569	ACSS3 (ENSSHAG00000005298) #24	PPFIA2 (ENSSHAG00000007734) #25	ENSSHAG00000032226	CCDC59 (ENSSHAG00000031706) #27	METTL25 (ENSSHAG00000007147) #28	ENSSHAG00000030042	TMTC2 (ENSSHAG00000031167) #29	SLC6A15 (ENSSHAG00000003371) #30	ENSSHAG00000031034	ALX1 (ENSSHAG00000010658) #31	RASSF9 (ENSSHAG00000006974) #33	NTS (ENSSHAG00000007922) #34	MGAT4C (ENSSHAG00000008842) #35
Platypus	MODERN SPECIES	5	KRR1 (ENSOANG00000014451)	ENSOANG00000047378	ENSOANG00000004688	ENSOANG00000037830 #7	OSBPL8 (ENSOANG00000011301) #8	ZDHHC17 (ENSOANG00000047613) #9	CSRP2 (ENSOANG00000007447) #10	E2F7 (ENSOANG00000007450) #12	NAV3 (ENSOANG00000007451) #14	SYT1 (ENSOANG00000007531) #16	PAWR (ENSOANG00000043356) #17	PPP1R12A (ENSOANG00000001685) #18	OTOGL (ENSOANG00000004859) #19	PTPRQ (ENSOANG00000004855) #20	MYF6 (ENSOANG00000004854) #21	MYF5 (ENSOANG00000004853) #22	ENSOANG00000041857 #23	ACSS3 (ENSOANG00000004851) #24	PPFIA2 (ENSOANG00000004850) #25	ENSOANG00000042867 #27	ENSOANG00000004849 #28	TMTC2 (ENSOANG00000015210) #29	SLC6A15 (ENSOANG00000006324) #30	ENSOANG00000050599	ENSOANG00000006648	ALX1 (ENSOANG00000006647) #31	RASSF9 (ENSOANG00000006646) #33	NTS (ENSOANG00000006645) #34	MGAT4C (ENSOANG00000006644) #35	C12orf29 (ENSOANG00000006642) #37	C12orf50 (ENSOANG00000006643) #36
Sauria	ANCESTRAL SPECIES	4	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Lepidosauria	ANCESTRAL SPECIES	3	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37	ENSGT00730000111039.C
Episquamata	ANCESTRAL SPECIES	3	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37	ENSGT00730000111039.C
Laterata	ANCESTRAL SPECIES	6	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT01040000241648	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Common wall lizard	MODERN SPECIES	1	OSBPL8 (ENSPMRG00000018504) #8	ZDHHC17 (ENSPMRG00000018520) #9	ENSPMRG00000018530	CSRP2 (ENSPMRG00000018535) #10	E2F7 (ENSPMRG00000018546) #12	NAV3 (ENSPMRG00000018638) #14	SYT1 (ENSPMRG00000018726) #16	PAWR (ENSPMRG00000018731) #17	PPP1R12A (ENSPMRG00000018742) #18	ENSPMRG00000018764	ENSPMRG00000018768	OTOGL (ENSPMRG00000018808) #19	ENSPMRG00000019031	PTPRQ (ENSPMRG00000019053) #20	MYF6 (ENSPMRG00000019140) #21	MYF5 (ENSPMRG00000019143) #22	LIN7A (ENSPMRG00000019147) #23	ACSS3 (ENSPMRG00000019167) #24	PPFIA2 (ENSPMRG00000019499) #25	ENSPMRG00000021433	CCDC59 (ENSPMRG00000021438) #27	METTL25 (ENSPMRG00000021455) #28	ENSPMRG00000021479	TMTC2 (ENSPMRG00000021488) #29	ENSPMRG00000021497	SLC6A15 (ENSPMRG00000021501) #30	ENSPMRG00000021518	ALX1 (ENSPMRG00000021545) #31	RASSF9 (ENSPMRG00000021551) #33	NTS (ENSPMRG00000009086) #34	MGAT4C (ENSPMRG00000009090) #35
Argentine black and white tegu	MODERN SPECIES	6	NAP1L1 (ENSSMRG00000001927)	OSBPL8 (ENSSMRG00000002083) #8	ZDHHC17 (ENSSMRG00000002140) #9	CSRP2 (ENSSMRG00000002146) #10	E2F7 (ENSSMRG00000002156) #12	NAV3 (ENSSMRG00000002199) #14	SYT1 (ENSSMRG00000010234) #16	PAWR (ENSSMRG00000010238) #17	PPP1R12A (ENSSMRG00000010257) #18	RPS16 (ENSSMRG00000010263)	OTOGL (ENSSMRG00000010267) #19	ENSSMRG00000010274	ENSSMRG00000010275	PTPRQ (ENSSMRG00000010276) #20	MYF6 (ENSSMRG00000010285) #21	MYF5 (ENSSMRG00000010286) #22	LIN7A (ENSSMRG00000010290) #23	ACSS3 (ENSSMRG00000010292) #24	PPFIA2 (ENSSMRG00000010302) #25	ENSSMRG00000010304	METTL25 (ENSSMRG00000010319) #28	TMTC2 (ENSSMRG00000010414) #29	SLC6A15 (ENSSMRG00000010425) #30	ENSSMRG00000010470	ENSSMRG00000010489	ALX1 (ENSSMRG00000010491) #31	RASSF9 (ENSSMRG00000010505) #33	NTS (ENSSMRG00000010506) #34	MGAT4C (ENSSMRG00000010507) #35	C12orf50 (ENSSMRG00000010526) #36	C12orf29 (ENSSMRG00000010527) #37
Toxicofera	ANCESTRAL SPECIES	7	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37	ENSGT00730000111039.C
Elapidae	ANCESTRAL SPECIES	6	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.f.a #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277.k #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37	ENSGT00730000111039.C
Elapidae_a	ANCESTRAL SPECIES	1	ENSGT00940000153362.a	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.f.a #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277.k #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37	ENSGT00730000111039.C
Acanthophiinae	ANCESTRAL SPECIES		ENSGT00940000153362.a	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.f.a #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277.k #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37	ENSGT00730000111039.C
Mainland tiger snake	MODERN SPECIES	20	ENSNSUG00000001793	ZDHHC17 (ENSNSUG00000001783) #9	CSRP2 (ENSNSUG00000001781) #10	E2F7 (ENSNSUG00000001756) #12	ENSNSUG00000001751	NAV3 (ENSNSUG00000001737) #14	SYT1 (ENSNSUG00000001720) #16	PAWR (ENSNSUG00000001717) #17	PPP1R12A (ENSNSUG00000000977) #18	ENSNSUG00000000970	ENSNSUG00000000966	OTOGL (ENSNSUG00000000909) #19	ENSNSUG00000000905	PTPRQ (ENSNSUG00000000888) #20	MYF6 (ENSNSUG00000000885) #21	MYF5 (ENSNSUG00000000881) #22	LIN7A (ENSNSUG00000000879) #23	ACSS3 (ENSNSUG00000000722) #24	PPFIA2 (ENSNSUG00000000679) #25	CCDC59 (ENSNSUG00000000657) #27	METTL25 (ENSNSUG00000000356) #28	TMTC2 (ENSNSUG00000000314) #29	ENSNSUG00000000296 #30	ENSNSUG00000000286 #30	ENSNSUG00000000256	ALX1 (ENSNSUG00000000235) #31	RASSF9 (ENSNSUG00000000215) #33	NTS (ENSNSUG00000000030) #34	MGAT4C (ENSNSUG00000000019) #35
Eastern brown snake	MODERN SPECIES		NAP1L1 (ENSPTXG00000007381)	ENSPTXG00000007380	OSBPL8 (ENSPTXG00000007376) #8	ZDHHC17 (ENSPTXG00000007375) #9	CSRP2 (ENSPTXG00000007374) #10	E2F7 (ENSPTXG00000007372) #12	NAV3 (ENSPTXG00000007360) #14	SYT1 (ENSPTXG00000007357) #16	PAWR (ENSPTXG00000007356) #17	PPP1R12A (ENSPTXG00000007355) #18	RPS16 (ENSPTXG00000007353)	OTOGL (ENSPTXG00000007346) #19	ENSPTXG00000007343	PTPRQ (ENSPTXG00000007341) #20	MYF6 (ENSPTXG00000007339) #21	MYF5 (ENSPTXG00000007338) #22	LIN7A (ENSPTXG00000007335) #23	ACSS3 (ENSPTXG00000007330) #24	PPFIA2 (ENSPTXG00000007321) #25	CCDC59 (ENSPTXG00000007319) #27	METTL25 (ENSPTXG00000007317) #28	TMTC2 (ENSPTXG00000007315) #29	ENSPTXG00000007314 #30	ENSPTXG00000007312 #30	ENSPTXG00000007310	ALX1 (ENSPTXG00000007309) #31	RASSF9 (ENSPTXG00000007307) #33	NTS (ENSPTXG00000007306) #34	MGAT4C (ENSPTXG00000007305) #35	C12orf50 (ENSPTXG00000007304) #36	C12orf29 (ENSPTXG00000007302) #37
Blue-lipped sea krait	MODERN SPECIES	6278															MYF6 (ENSLLTG00000009704) #21	MYF5 (ENSLLTG00000009715) #22
Indian cobra	MODERN SPECIES	6	PHLDA1 (ENSNNAG00000006109)	NAP1L1 (ENSNNAG00000006156)	OSBPL8 (ENSNNAG00000006212) #8	ZDHHC17 (ENSNNAG00000006609) #9	CSRP2 (ENSNNAG00000006626) #10	E2F7 (ENSNNAG00000006676) #12	NAV3 (ENSNNAG00000007065) #14	SYT1 (ENSNNAG00000007300) #16	PAWR (ENSNNAG00000007341) #17	PPP1R12A (ENSNNAG00000007491) #18	RPS16 (ENSNNAG00000010459)	OTOGL (ENSNNAG00000010528) #19	ENSNNAG00000011195	PTPRQ (ENSNNAG00000011257) #20	MYF6 (ENSNNAG00000011423) #21	MYF5 (ENSNNAG00000011436) #22	LIN7A (ENSNNAG00000011463) #23	ACSS3 (ENSNNAG00000011558) #24	PPFIA2 (ENSNNAG00000011658) #25	CCDC59 (ENSNNAG00000012004) #27	METTL25 (ENSNNAG00000012065) #28	TMTC2 (ENSNNAG00000012643) #29	SLC6A15 (ENSNNAG00000012726) #30	ENSNNAG00000012826	ALX1 (ENSNNAG00000012891) #31	RASSF9 (ENSNNAG00000012912) #33	NTS (ENSNNAG00000012925) #34	MGAT4C (ENSNNAG00000012939) #35	C12orf50 (ENSNNAG00000012961) #36	C12orf29 (ENSNNAG00000012986) #37	ENSNNAG00000012999
Lizard	MODERN SPECIES	4	LGR5 (ENSACAG00000007193)	TSPAN8 (ENSACAG00000007164)	PTPRR (ENSACAG00000021144)	PTPRB (ENSACAG00000001460)	ENSACAG00000045283	ENSACAG00000045240	SYT1 (ENSACAG00000013826) #16	ENSACAG00000039009	PAWR (ENSACAG00000038363) #17	PPP1R12A (ENSACAG00000014016) #18	ENSACAG00000042872	ENSACAG00000014176	OTOGL (ENSACAG00000014205) #19	PTPRQ (ENSACAG00000014272) #20	MYF6 (ENSACAG00000042468) #21	MYF5 (ENSACAG00000014431) #22	LIN7A (ENSACAG00000014452) #23	ACSS3 (ENSACAG00000014473) #24	ENSACAG00000039448	PPFIA2 (ENSACAG00000014550) #25	ENSACAG00000014707	METTL25 (ENSACAG00000014713) #28	ENSACAG00000044939	ENSACAG00000034859	TMTC2 (ENSACAG00000014731) #29	ENSACAG00000042686	ENSACAG00000005259	SLC6A15 (ENSACAG00000010944) #30	ENSACAG00000011087	ALX1 (ENSACAG00000011108) #31	ENSACAG00000044352
tuatara	MODERN SPECIES	1455					ENSSPUG00000001612	ENSSPUG00000001605	ATP5F1C (ENSSPUG00000001593)	KIN (ENSSPUG00000001394)	ITIH2 (ENSSPUG00000001323)	ITIH5 (ENSSPUG00000001261)	ENSSPUG00000001249	SFMBT2 (ENSSPUG00000001165)	PRKCQ (ENSSPUG00000001072)	PFKFB3 (ENSSPUG00000001043)	RBM17 (ENSSPUG00000001036)	ENSSPUG00000001027 #22
Archelosauria	ANCESTRAL SPECIES	3	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Cryptodira	ANCESTRAL SPECIES	11	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Testudinoidea	ANCESTRAL SPECIES	4	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713.u #12	ENSGT00940000157713.v #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Emydidae	ANCESTRAL SPECIES	10	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713.u #12	ENSGT00940000157713.v #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000183194.a.b
painted turtle	MODERN SPECIES		P4HA3 (ENSCPBG00000000051)	ENSCPBG00000000052	ENSCPBG00000000053	SPCS2 (ENSCPBG00000000054)	XRRA1 (ENSCPBG00000000055)	RNF169 (ENSCPBG00000000056)	SYT1 (ENSCPBG00000000057) #16	ENSCPBG00000000058	PAWR (ENSCPBG00000000059) #17	PPP1R12A (ENSCPBG00000000060) #18	RPS16 (ENSCPBG00000000062)	OTOGL (ENSCPBG00000000063) #19	ENSCPBG00000000065	PTPRQ (ENSCPBG00000000067) #20	MYF6 (ENSCPBG00000000068) #21	MYF5 (ENSCPBG00000000069) #22	LIN7A (ENSCPBG00000000070) #23	ACSS3 (ENSCPBG00000000071) #24	ENSCPBG00000000072	PPFIA2 (ENSCPBG00000000073) #25	CCDC59 (ENSCPBG00000000075) #27	METTL25 (ENSCPBG00000000076) #28	TMTC2 (ENSCPBG00000000077) #29	SLC6A15 (ENSCPBG00000000079) #30	TSPAN19 (ENSCPBG00000000080)	ENSCPBG00000000081	ENSCPBG00000000082	ALX1 (ENSCPBG00000000083) #31	RASSF9 (ENSCPBG00000000084) #33	NTS (ENSCPBG00000000085) #34	MGAT4C (ENSCPBG00000000086) #35
Three-toed box turtle	MODERN SPECIES	28	NAP1L1 (ENSTMTG00000017966)	BBS10 (ENSTMTG00000017983) #7	OSBPL8 (ENSTMTG00000018028) #8	ZDHHC17 (ENSTMTG00000018059) #9	CSRP2 (ENSTMTG00000018107) #10	ENSTMTG00000018112 #12	ENSTMTG00000018124 #12	NAV3 (ENSTMTG00000018146) #14	SYT1 (ENSTMTG00000018366) #16	PAWR (ENSTMTG00000018399) #17	PPP1R12A (ENSTMTG00000018415) #18	RPS16 (ENSTMTG00000018474)	OTOGL (ENSTMTG00000018509) #19	PTPRQ (ENSTMTG00000018868) #20	MYF6 (ENSTMTG00000018967) #21	MYF5 (ENSTMTG00000000077) #22	ENSTMTG00000000099 #23	LIN7A (ENSTMTG00000000157) #23	ACSS3 (ENSTMTG00000000183) #24	ENSTMTG00000000244 #25	ENSTMTG00000000306 #25	CCDC59 (ENSTMTG00000000341) #27	METTL25 (ENSTMTG00000000386) #28	TMTC2 (ENSTMTG00000000433) #29	SLC6A15 (ENSTMTG00000000460) #30	ENSTMTG00000000487	TSPAN19 (ENSTMTG00000000501)	ENSTMTG00000000530	ALX1 (ENSTMTG00000000570) #31	RASSF9 (ENSTMTG00000000576) #33	NTS (ENSTMTG00000000587) #34
Testudinidae	ANCESTRAL SPECIES	12	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713.u #12	ENSGT00940000157713.v #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37	ENSGT00730000111039.C
Goode s thornscrub tortoise	MODERN SPECIES		NAP1L1 (ENSGEVG00005000012)	BBS10 (ENSGEVG00005008898) #7	OSBPL8 (ENSGEVG00005008789) #8	ZDHHC17 (ENSGEVG00005008730) #9	CSRP2 (ENSGEVG00005008707) #10	ENSGEVG00005008668 #12	ENSGEVG00005008646 #12	NAV3 (ENSGEVG00005008397) #14	SYT1 (ENSGEVG00005008297) #16	PAWR (ENSGEVG00005008262) #17	PPP1R12A (ENSGEVG00005008199) #18	RPS16 (ENSGEVG00005008158)	OTOGL (ENSGEVG00005007663) #19	PTPRQ (ENSGEVG00005007409) #20	MYF6 (ENSGEVG00005007365) #21	MYF5 (ENSGEVG00005007350) #22	LIN7A (ENSGEVG00005007306) #23	ACSS3 (ENSGEVG00005007236) #24	PPFIA2 (ENSGEVG00005007013) #25	CCDC59 (ENSGEVG00005006965) #27	METTL25 (ENSGEVG00005006938) #28	TMTC2 (ENSGEVG00005006853) #29	ENSGEVG00005006829	ENSGEVG00005006780 #30	ENSGEVG00005006758 #30	ENSGEVG00005006696	ALX1 (ENSGEVG00005006662) #31	RASSF9 (ENSGEVG00005006645) #33	NTS (ENSGEVG00005006613) #34	MGAT4C (ENSGEVG00005006595) #35	C12orf50 (ENSGEVG00005006563) #36
Abingdon island giant tortoise	MODERN SPECIES	2351			ENSCABG00000020097	ENSCABG00000020235	ENSCABG00000020236	ENSCABG00000020237	KLF8 (ENSCABG00000020238)	ENSCABG00000020239	ENSCABG00000020241	ENSCABG00000020242	ENSCABG00000020244	OTOGL (ENSCABG00000020245) #19	ENSCABG00000020248	PTPRQ (ENSCABG00000020251) #20	MYF6 (ENSCABG00000020254) #21	MYF5 (ENSCABG00000020256) #22
Chinese turtle	MODERN SPECIES	718			ENSPSIG00000001298	ZDHHC17 (ENSPSIG00000012905) #9	CSRP2 (ENSPSIG00000012637) #10	E2F7 (ENSPSIG00000012629) #12	NAV3 (ENSPSIG00000009060) #14	SYT1 (ENSPSIG00000007501) #16	PAWR (ENSPSIG00000007487) #17	PPP1R12A (ENSPSIG00000017200) #18	ENSPSIG00000016930	ENSPSIG00000016823	OTOGL (ENSPSIG00000014034) #19	ENSPSIG00000013550	MYF6 (ENSPSIG00000012468) #21	MYF5 (ENSPSIG00000012000) #22	LIN7A (ENSPSIG00000011871) #23	ACSS3 (ENSPSIG00000009322) #24	PPFIA2 (ENSPSIG00000007454) #25	METTL25 (ENSPSIG00000007019) #28	TMTC2 (ENSPSIG00000006034) #29
Archosauria	ANCESTRAL SPECIES	4	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Australian saltwater crocodile	MODERN SPECIES	49	BBS10 (ENSCPRG00005006087) #7	OSBPL8 (ENSCPRG00005006069) #8	ZDHHC17 (ENSCPRG00005006020) #9	CSRP2 (ENSCPRG00005005963) #10	E2F7 (ENSCPRG00005005958) #12	ENSCPRG00005005917	NAV3 (ENSCPRG00005004050) #14	SYT1 (ENSCPRG00005003800) #16	PAWR (ENSCPRG00005003774) #17	PPP1R12A (ENSCPRG00005003724) #18	RPS16 (ENSCPRG00005003696)	OTOGL (ENSCPRG00005003554) #19	ENSCPRG00005003525	PTPRQ (ENSCPRG00005003495) #20	MYF6 (ENSCPRG00005003486) #21	MYF5 (ENSCPRG00005003473) #22	ENSCPRG00005003470 #23	LIN7A (ENSCPRG00005003468) #23	ACSS3 (ENSCPRG00005003271) #24	PPFIA2 (ENSCPRG00005003178) #25	CCDC59 (ENSCPRG00005003134) #27	METTL25 (ENSCPRG00005003132) #28	TMTC2 (ENSCPRG00005003097) #29	SLC6A15 (ENSCPRG00005003057) #30	TSPAN19 (ENSCPRG00005003030)	ENSCPRG00005003015	ENSCPRG00005003000	ALX1 (ENSCPRG00005002988) #31	RASSF9 (ENSCPRG00005002976) #33	NTS (ENSCPRG00005002955) #34	MGAT4C (ENSCPRG00005002949) #35
Aves	ANCESTRAL SPECIES	1	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Neognathae	ANCESTRAL SPECIES	3	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Neognathae_b	ANCESTRAL SPECIES	2	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Passeriformes	ANCESTRAL SPECIES	3	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37	ENSGT00730000111039.C
Great tit	MODERN SPECIES	10	NAP1L1 (ENSPMJG00000012651)	OSBPL8 (ENSPMJG00000012652) #8	ZDHHC17 (ENSPMJG00000012653) #9	CSRP2 (ENSPMJG00000012654) #10	E2F7 (ENSPMJG00000012655) #12	NAV3 (ENSPMJG00000012656) #14	SYT1 (ENSPMJG00000012662) #16	ENSPMJG00000012663	PAWR (ENSPMJG00000012664) #17	PPP1R12A (ENSPMJG00000012665) #18	RPS16 (ENSPMJG00000012667)	OTOGL (ENSPMJG00000012668) #19	ENSPMJG00000012669	PTPRQ (ENSPMJG00000012670) #20	MYF6 (ENSPMJG00000012671) #21	MYF5 (ENSPMJG00000012672) #22	LIN7A (ENSPMJG00000012673) #23	ACSS3 (ENSPMJG00000012674) #24	PPFIA2 (ENSPMJG00000012675) #25	CCDC59 (ENSPMJG00000012676) #27	METTL25 (ENSPMJG00000012677) #28	TMTC2 (ENSPMJG00000012678) #29	SLC6A15 (ENSPMJG00000012682) #30	ENSPMJG00000012685	ALX1 (ENSPMJG00000012686) #31	RASSF9 (ENSPMJG00000012688) #33	NTS (ENSPMJG00000012689) #34	MGAT4C (ENSPMJG00000012690) #35	C12orf50 (ENSPMJG00000012691) #36	C12orf29 (ENSPMJG00000012692) #37	CEP290 (ENSPMJG00000012693)
Passeriformes_d	ANCESTRAL SPECIES	3	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37	ENSGT00730000111039.C
Flycatcher	MODERN SPECIES	10	KRR1 (ENSFALG00000010395)	PHLDA1 (ENSFALG00000014745)	NAP1L1 (ENSFALG00000010403)	OSBPL8 (ENSFALG00000010404) #8	ZDHHC17 (ENSFALG00000010415) #9	CSRP2 (ENSFALG00000010426) #10	E2F7 (ENSFALG00000010433) #12	NAV3 (ENSFALG00000010449) #14	SYT1 (ENSFALG00000010476) #16	PPP1R12A (ENSFALG00000010487) #18	ENSFALG00000028909	OTOGL (ENSFALG00000010495) #19	ENSFALG00000026391	PTPRQ (ENSFALG00000010498) #20	MYF6 (ENSFALG00000010503) #21	MYF5 (ENSFALG00000010507) #22	LIN7A (ENSFALG00000010511) #23	ACSS3 (ENSFALG00000010517) #24	PPFIA2 (ENSFALG00000010521) #25	CCDC59 (ENSFALG00000010525) #27	METTL25 (ENSFALG00000010529) #28	TMTC2 (ENSFALG00000010537) #29	SLC6A15 (ENSFALG00000010541) #30	ENSFALG00000028693	ALX1 (ENSFALG00000010547) #31	RASSF9 (ENSFALG00000027104) #33	NTS (ENSFALG00000025234) #34	MGAT4C (ENSFALG00000010557) #35	C12orf50 (ENSFALG00000010559) #36	C12orf29 (ENSFALG00000023606) #37	CEP290 (ENSFALG00000010610)
Passeriformes_g	ANCESTRAL SPECIES	4	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00500000044938 #37	ENSGT00730000111039.C	ENSGT00940000157538
Passeroidea	ANCESTRAL SPECIES	3	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00500000044938 #37	ENSGT00730000111039.C	ENSGT00940000157538
Zebra finch	MODERN SPECIES	11	NAP1L1 (ENSTGUG00000007412)	BBS10 (ENSTGUG00000007444) #7	OSBPL8 (ENSTGUG00000007445) #8	ZDHHC17 (ENSTGUG00000007477) #9	CSRP2 (ENSTGUG00000028299) #10	E2F7 (ENSTGUG00000007515) #12	NAV3 (ENSTGUG00000007519) #14	SYT1 (ENSTGUG00000007572) #16	PAWR (ENSTGUG00000020006) #17	PPP1R12A (ENSTGUG00000007603) #18	RPS16 (ENSTGUG00000007667)	OTOGL (ENSTGUG00000007680) #19	ENSTGUG00000023557	PTPRQ (ENSTGUG00000007720) #20	MYF6 (ENSTGUG00000007751) #21	MYF5 (ENSTGUG00000007755) #22	LIN7A (ENSTGUG00000007757) #23	ACSS3 (ENSTGUG00000007763) #24	PPFIA2 (ENSTGUG00000007778) #25	CCDC59 (ENSTGUG00000007835) #27	METTL25 (ENSTGUG00000007841) #28	TMTC2 (ENSTGUG00000007855) #29	SLC6A15 (ENSTGUG00000007865) #30	ENSTGUG00000007889	ALX1 (ENSTGUG00000007899) #31	RASSF9 (ENSTGUG00000007908) #33	NTS (ENSTGUG00000027877) #34	MGAT4C (ENSTGUG00000007933) #35	ENSTGUG00000025254	C12orf29 (ENSTGUG00000007945) #37	CEP290 (ENSTGUG00000007963)
Common canary	MODERN SPECIES	6	NAP1L1 (ENSSCAG00000008861)	OSBPL8 (ENSSCAG00000008836) #8	ZDHHC17 (ENSSCAG00000008792) #9	CSRP2 (ENSSCAG00000008783) #10	E2F7 (ENSSCAG00000008773) #12	ENSSCAG00000008755 #14	ENSSCAG00000008738 #14	SYT1 (ENSSCAG00000008697) #16	PAWR (ENSSCAG00000008657) #17	PPP1R12A (ENSSCAG00000008580) #18	RPS16 (ENSSCAG00000008547)	OTOGL (ENSSCAG00000008492) #19	ENSSCAG00000008481	PTPRQ (ENSSCAG00000008462) #20	MYF6 (ENSSCAG00000008454) #21	MYF5 (ENSSCAG00000008451) #22	LIN7A (ENSSCAG00000008443) #23	ACSS3 (ENSSCAG00000008416) #24	PPFIA2 (ENSSCAG00000008164) #25	CCDC59 (ENSSCAG00000008055) #27	METTL25 (ENSSCAG00000007930) #28	MGAT4C (ENSSCAG00000007907) #35	NTS (ENSSCAG00000007904) #34	RASSF9 (ENSSCAG00000007901) #33	ALX1 (ENSSCAG00000007890) #31	ENSSCAG00000007880	SLC6A15 (ENSSCAG00000007869) #30	TMTC2 (ENSSCAG00000007852) #29	C12orf29 (ENSSCAG00000007807) #37	CEP290 (ENSSCAG00000007595)	TMTC3 (ENSSCAG00000007568)
Medium ground finch	MODERN SPECIES	13	ENSGFOG00000005356	ENSGFOG00000005348	KRR1 (ENSGFOG00000005331)	NAP1L1 (ENSGFOG00000005292)	OSBPL8 (ENSGFOG00000005268) #8	ZDHHC17 (ENSGFOG00000005185) #9	CSRP2 (ENSGFOG00000005156) #10	E2F7 (ENSGFOG00000005143) #12	NAV3 (ENSGFOG00000005066) #14	SYT1 (ENSGFOG00000005048) #16	PPP1R12A (ENSGFOG00000005009) #18	RPS16 (ENSGFOG00000004986)	OTOGL (ENSGFOG00000004777) #19	PTPRQ (ENSGFOG00000004653) #20	MYF6 (ENSGFOG00000004628) #21	MYF5 (ENSGFOG00000004624) #22	LIN7A (ENSGFOG00000004616) #23	ACSS3 (ENSGFOG00000004536) #24	ENSGFOG00000000855 #25	CCDC59 (ENSGFOG00000000604) #27	METTL25 (ENSGFOG00000000588) #28	TMTC2 (ENSGFOG00000000573) #29
Neognathae_c	ANCESTRAL SPECIES		ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00500000044938 #37	ENSGT00730000111039.C
Kakapo	MODERN SPECIES	20	ENSSHBG00005003428	OSBPL8 (ENSSHBG00005003509) #8	ZDHHC17 (ENSSHBG00005003761) #9	CSRP2 (ENSSHBG00005003817) #10	E2F7 (ENSSHBG00005003861) #12	NAV3 (ENSSHBG00005004247) #14	ENSSHBG00005004847	SYT1 (ENSSHBG00005004867) #16	PAWR (ENSSHBG00005004872) #17	PPP1R12A (ENSSHBG00005004881) #18	RPS16 (ENSSHBG00005004902)	OTOGL (ENSSHBG00005004951) #19	ENSSHBG00005004998	PTPRQ (ENSSHBG00005005034) #20	MYF6 (ENSSHBG00005005072) #21	MYF5 (ENSSHBG00005005076) #22	LIN7A (ENSSHBG00005005088) #23	ACSS3 (ENSSHBG00005005107) #24	PPFIA2 (ENSSHBG00005005123) #25	CCDC59 (ENSSHBG00005005147) #27	METTL25 (ENSSHBG00005005155) #28	TMTC2 (ENSSHBG00005005167) #29	SLC6A15 (ENSSHBG00005005181) #30	TSPAN19 (ENSSHBG00005005237)	ENSSHBG00005005257	ALX1 (ENSSHBG00005005283) #31	ENSSHBG00005005293	RASSF9 (ENSSHBG00005005303) #33	NTS (ENSSHBG00005005318) #34	MGAT4C (ENSSHBG00005005332) #35	C12orf29 (ENSSHBG00005005351) #37
Golden eagle	MODERN SPECIES	18	NAP1L1 (ENSACCG00020011243)	BBS10 (ENSACCG00020011231) #7	OSBPL8 (ENSACCG00020011213) #8	ZDHHC17 (ENSACCG00020011189) #9	CSRP2 (ENSACCG00020011176) #10	E2F7 (ENSACCG00020011147) #12	NAV3 (ENSACCG00020011091) #14	SYT1 (ENSACCG00020011033) #16	PAWR (ENSACCG00020011015) #17	PPP1R12A (ENSACCG00020010939) #18	RPS16 (ENSACCG00020010874)	OTOGL (ENSACCG00020010835) #19	ENSACCG00020010786	PTPRQ (ENSACCG00020010748) #20	MYF6 (ENSACCG00020010717) #21	MYF5 (ENSACCG00020010710) #22	LIN7A (ENSACCG00020010701) #23	ACSS3 (ENSACCG00020010468) #24	PPFIA2 (ENSACCG00020010168) #25	ENSACCG00020010123	CCDC59 (ENSACCG00020010109) #27	ENSACCG00020016084	METTL25 (ENSACCG00020016068) #28	TMTC2 (ENSACCG00020016051) #29	ENSACCG00020016040	SLC6A15 (ENSACCG00020016027) #30	TSPAN19 (ENSACCG00020016013)	ENSACCG00020015998	ALX1 (ENSACCG00020015990) #31	RASSF9 (ENSACCG00020015979) #33	NTS (ENSACCG00020015965) #34
Galloanserae	ANCESTRAL SPECIES	3	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Anatidae	ANCESTRAL SPECIES	14	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000267073	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Pink-footed goose	MODERN SPECIES	36	NAP1L1 (ENSABRG00000002153)	BBS10 (ENSABRG00000002187) #7	OSBPL8 (ENSABRG00000002275) #8	ZDHHC17 (ENSABRG00000002383) #9	CSRP2 (ENSABRG00000002441) #10	E2F7 (ENSABRG00000002456) #12	NAV3 (ENSABRG00000002539) #14	ENSABRG00000002691	SYT1 (ENSABRG00000002806) #16	PAWR (ENSABRG00000002832) #17	PPP1R12A (ENSABRG00000002856) #18	RPS16 (ENSABRG00000002997)	OTOGL (ENSABRG00000003060) #19	PTPRQ (ENSABRG00000003711) #20	MYF6 (ENSABRG00000003882) #21	MYF5 (ENSABRG00000003896) #22	LIN7A (ENSABRG00000003928) #23	ENSABRG00000003943 #24	ENSABRG00000003973 ##25	CHADL (ENSABRG00000003979)	RANGAP1 (ENSABRG00000004047)	ZC3H7B (ENSABRG00000004538)	TEF (ENSABRG00000004576)	TOB2 (ENSABRG00000004605)	PHF5A (ENSABRG00000004614)	ACO2 (ENSABRG00000004640)	POLR3H (ENSABRG00000004688)	CSDC2 (ENSABRG00000004705)	PMM1 (ENSABRG00000004715)	DESI1 (ENSABRG00000004740)	XRCC6 (ENSABRG00000004750)
Duck	MODERN SPECIES		NAP1L1 (ENSAPLG00000016178)	OSBPL8 (ENSAPLG00000016005) #8	ZDHHC17 (ENSAPLG00000014034) #9	ENSAPLG00000014346	E2F7 (ENSAPLG00000014506) #12	NAV3 (ENSAPLG00000014672) #14	ENSAPLG00000029309	SYT1 (ENSAPLG00000014912) #16	PAWR (ENSAPLG00000027740) #17	PPP1R12A (ENSAPLG00000015197) #18	RPS16 (ENSAPLG00000015907)	OTOGL (ENSAPLG00000015946) #19	ENSAPLG00000019979	PTPRQ (ENSAPLG00000016187) #20	MYF6 (ENSAPLG00000002254) #21	MYF5 (ENSAPLG00000001124) #22	ENSAPLG00000001136 #23	LIN7A (ENSAPLG00000017756) #23	ENSAPLG00000029393	RANGAP1 (ENSAPLG00000006767)	ZC3H7B (ENSAPLG00000005880)	TEF (ENSAPLG00000005838)	TOB2 (ENSAPLG00000023708)	PHF5A (ENSAPLG00000021195)	ACO2 (ENSAPLG00000005198)	POLR3H (ENSAPLG00000005063)	CSDC2 (ENSAPLG00000005057)	DESI1 (ENSAPLG00000016507)	XRCC6 (ENSAPLG00000004469)	SNU13 (ENSAPLG00000001022)	ENSAPLG00000030477
Phasianidae	ANCESTRAL SPECIES		ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Japanese quail	MODERN SPECIES		NAP1L1 (ENSCJPG00005016162)	BBS10 (ENSCJPG00005016163) #7	OSBPL8 (ENSCJPG00005016164) #8	ZDHHC17 (ENSCJPG00005016170) #9	CSRP2 (ENSCJPG00005016171) #10	E2F7 (ENSCJPG00005016173) #12	ENSCJPG00005016175	NAV3 (ENSCJPG00005016185) #14	SYT1 (ENSCJPG00005016211) #16	PAWR (ENSCJPG00005016216) #17	PPP1R12A (ENSCJPG00005016217) #18	RPS16 (ENSCJPG00005000776)	OTOGL (ENSCJPG00005000816) #19	PTPRQ (ENSCJPG00005001013) #20	MYF6 (ENSCJPG00005001103) #21	MYF5 (ENSCJPG00005001107) #22	LIN7A (ENSCJPG00005001112) #23	ACSS3 (ENSCJPG00005001150) #24	PPFIA2 (ENSCJPG00005001332) #25	CCDC59 (ENSCJPG00005004695) #27	METTL25 (ENSCJPG00005004697) #28	TMTC2 (ENSCJPG00005004705) #29	SLC6A15 (ENSCJPG00005004747) #30	ENSCJPG00005004764	ALX1 (ENSCJPG00005004774) #31	RASSF9 (ENSCJPG00005004777) #33	NTS (ENSCJPG00005004778) #34	MGAT4C (ENSCJPG00005004780) #35	C12orf50 (ENSCJPG00005004807) #36	C12orf29 (ENSCJPG00005004811) #37	ENSCJPG00005004813
Phasianidae_b	ANCESTRAL SPECIES	9	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Chicken	MODERN SPECIES		PHLDA1 (ENSGALG00010014238)	NAP1L1 (ENSGALG00010013389)	BBS10 (ENSGALG00010013400) #7	OSBPL8 (ENSGALG00010013444) #8	ZDHHC17 (ENSGALG00010013476) #9	CSRP2 (ENSGALG00010013516) #10	E2F7 (ENSGALG00010013538) #12	NAV3 (ENSGALG00010013648) #14	SYT1 (ENSGALG00010012026) #16	PAWR (ENSGALG00010013283) #17	PPP1R12A (ENSGALG00010013333) #18	RPS16 (ENSGALG00010013358)	OTOGL (ENSGALG00010013364) #19	PTPRQ (ENSGALG00010012230) #20	MYF6 (ENSGALG00010012253) #21	MYF5 (ENSGALG00010012264) #22	ENSGALG00010012271 #23	ENSGALG00010014881 #23	ACSS3 (ENSGALG00010012337) #24	PPFIA2 (ENSGALG00010012450) #25	ENSGALG00010013569	CCDC59 (ENSGALG00010010017) #27	METTL25 (ENSGALG00010010042) #28	TMTC2 (ENSGALG00010011067) #29	SLC6A15 (ENSGALG00010011117) #30	TSPAN19 (ENSGALG00010011168)	ENSGALG00010011199	ALX1 (ENSGALG00010011243) #31	RASSF9 (ENSGALG00010011313) #33	NTS (ENSGALG00010011352) #34	MGAT4C (ENSGALG00010011370) #35
Anura	ANCESTRAL SPECIES		ENSGT00940000155834	ENSGT00940000162446	ENSGT00940000164439	ENSGT00940000154098.a	ENSGT00730000111360	ENSGT00390000008708	ENSGT00940000157255	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00660000096975	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000167105	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00950000182956.b.b.a.a.c.a
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000016337	ENSLLEG00000016597	ENSLLEG00000016633	ENSLLEG00000016847	NUAK1 (ENSLLEG00000017219)	AVPR1A (ENSLLEG00000017308)	PPM1H (ENSLLEG00000017365)	ENSLLEG00000017515	MON2 (ENSLLEG00000017568)	ENSLLEG00000018351	ENSLLEG00000018379	OTOGL (ENSLLEG00000018482) #19	ENSLLEG00000019169	PTPRQ (ENSLLEG00000019234) #20	MYF6 (ENSLLEG00000020820) #21	MYF5 (ENSLLEG00000020856) #22	LIN7A (ENSLLEG00000020908) #23	ENSLLEG00000021060	ACSS3 (ENSLLEG00000021119) #24	ENSLLEG00000021608	PPFIA2 (ENSLLEG00000021708) #25	ENSLLEG00000023610	CCDC59 (ENSLLEG00000023716) #27	METTL25 (ENSLLEG00000023763) #28	ENSLLEG00000024005	TMTC2 (ENSLLEG00000024034) #29	SLC6A15 (ENSLLEG00000024199) #30	ENSLLEG00000024506	ENSLLEG00000024610	ENSLLEG00000025376	ALX1 (ENSLLEG00000025405) #31
Frog	MODERN SPECIES	3	c12orf63 (ENSXETG00000045266)	nedd1 (ENSXETG00000021683)	ENSXETG00000034921	ENSXETG00000032908	tmpo (ENSXETG00000018759)	slc25a3 (ENSXETG00000018767)	ENSXETG00000045338	nuak1 (ENSXETG00000018772)	avpr1a (ENSXETG00000018781)	ppm1h (ENSXETG00000018793)	ptpn3 (ENSXETG00000018796)	rps16 (ENSXETG00000018809)	OTOGL (ENSXETG00000014502) #19	PTPRQ (ENSXETG00000030349) #20	myf6 (ENSXETG00000027340) #21	myf5 (ENSXETG00000014520) #22	lin7a (ENSXETG00000014525) #23	acss3 (ENSXETG00000014528) #24	ppfia2 (ENSXETG00000014532) #25	ccdc59 (ENSXETG00000014539) #27	mettl25 (ENSXETG00000014540) #28	ENSXETG00000047662	tmtc2 (ENSXETG00000021370) #29	ENSXETG00000042111	slc6a15 (ENSXETG00000021372) #30	lrriq1 (ENSXETG00000037765)	alx1 (ENSXETG00000021397) #31	rassf9 (ENSXETG00000011745) #33	nts (ENSXETG00000040562) #34	mgat4c (ENSXETG00000011744) #35	cep290 (ENSXETG00000011742)
Actinopterygii	ANCESTRAL SPECIES	17	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00660000096975	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000167105	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00500000044938 #37
Neopterygii	ANCESTRAL SPECIES	21	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00960000187527	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00660000096975	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000167105	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00500000044938 #37
Osteoglossocephalai	ANCESTRAL SPECIES	48	ENSGT00940000163632	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.k.b	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25
Osteoglossiformes	ANCESTRAL SPECIES	251	ENSGT00390000018775	ENSGT00940000165334	ENSGT00440000039564.b.a	ENSGT00940000153362.a.d	ENSGT00940000156622.a #8	ENSGT00530000063074.b.b.c #9	ENSGT00940000154980.db #10	ENSGT00940000157713.b #12	ENSGT00940000158014.a.b #14	ENSGT00390000000406.n #17	ENSGT00940000156120.a.a #18	ENSGT00390000013067.l	ENSGT00940000160698 #19	ENSGT00940000167492.i	ENSGT00950000182959.a.b.b.a.k #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.`b #25
P. kingsleyae	MODERN SPECIES	330								ENSPKIG00000003485 #14	syt1a (ENSPKIG00000003538) #16	PAWR (ENSPKIG00000003600) #17	ppp1r12a (ENSPKIG00000003762) #18	rps16 (ENSPKIG00000004000)	OTOGL (ENSPKIG00000004061) #19	ENSPKIG00000004182	myf6 (ENSPKIG00000004248) #21	myf5 (ENSPKIG00000004272) #22	lin7a (ENSPKIG00000004317) #23	ACSS3 (ENSPKIG00000004377) #24	ppfia2 (ENSPKIG00000004590) #25
Asian bonytongue	MODERN SPECIES	16	krr1 (ENSSFOG00015031941)	phlda1 (ENSSFOG00015033220)	nap1l1 (ENSSFOG00015018510)	OSBPL8 (ENSSFOG00015018553) #8	zdhhc17 (ENSSFOG00015018700) #9	csrp2 (ENSSFOG00015018779) #10	nav3 (ENSSFOG00015018832) #14	ENSSFOG00015018791	syt1a (ENSSFOG00015031929) #16	PAWR (ENSSFOG00015019109) #17	ppp1r12a (ENSSFOG00015019159) #18	rps16 (ENSSFOG00015019382)	OTOGL (ENSSFOG00015019419) #19	ENSSFOG00015019468	myf6 (ENSSFOG00015019606) #21	myf5 (ENSSFOG00015019621) #22	lin7a (ENSSFOG00015019629) #23	ACSS3 (ENSSFOG00015019639) #24	ppfia2 (ENSSFOG00015019713) #25	TMTC2 (ENSSFOG00015019839) #29	ENSSFOG00015029516	IQSEC3 (ENSSFOG00015019895)	ENSSFOG00015019921	ddx11 (ENSSFOG00015019931)	fkbp4 (ENSSFOG00015019964)	ENSSFOG00015019985	ENSSFOG00015020008	ENSSFOG00015020016	tnni1c (ENSSFOG00015020045)	c2cd5 (ENSSFOG00015020202)	st8sia1 (ENSSFOG00015020372)
Clupeocephala	ANCESTRAL SPECIES	188	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00510000047886.b	ENSGT00940000171263	ENSGT00940000158014 #14	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.k.a	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h
Otomorpha	ANCESTRAL SPECIES	204	ENSGT00940000156038.b	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00510000047886.b	ENSGT00940000158014 #14	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.k.a	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h
Clupeiformes	ANCESTRAL SPECIES	62	ENSGT00940000156038.b	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00510000047886.b	ENSGT00940000158014 #14	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.k.a	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000172289	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00940000159750	ENSGT00940000154814.b	ENSGT00940000156403.b	ENSGT00950000182937.B.b
Denticle herring	MODERN SPECIES	6	OSBPL8 (ENSDCDG00000022762) #8	zdhhc17 (ENSDCDG00000026306) #9	csrp2 (ENSDCDG00000026322) #10	e2f7 (ENSDCDG00000026324) #12	ENSDCDG00000026325	ENSDCDG00000026326	ENSDCDG00000026328	ENSDCDG00000026331	nav3 (ENSDCDG00000026354) #14	syt1a (ENSDCDG00000027575) #16	ENSDCDG00000027582	pawr (ENSDCDG00000027583) #17	ppp1r12a (ENSDCDG00000027584) #18	rps16 (ENSDCDG00000027593)	myf6 (ENSDCDG00000027598) #21	myf5 (ENSDCDG00000027600) #22	lin7a (ENSDCDG00000027602) #23	ACSS3 (ENSDCDG00000027609) #24	ppfia2 (ENSDCDG00000027692) #25	ENSDCDG00000030343	llph (ENSDCDG00000030344)	hcls1 (ENSDCDG00000030354)	ENSDCDG00000030434	guca1a (ENSDCDG00000030436)	orc5 (ENSDCDG00000030439)	lhfpl3 (ENSDCDG00000030443)	DNAH6 (ENSDCDG00000030470)	ENSDCDG00000030792	si:cabz01085950.1 (ENSDCDG00000030919)	PTPRO (ENSDCDG00000030969)	eps8a (ENSDCDG00000032073)
Atlantic herring	MODERN SPECIES	7	bmpr2a (ENSCHAG00000004641)	ENSCHAG00000005504	slc15a1b (ENSCHAG00000011257)	ENSCHAG00000011604	nr4a2b (ENSCHAG00000011794)	gpd2 (ENSCHAG00000011812)	ENSCHAG00000012171	optn (ENSCHAG00000012181)	ccdc3a (ENSCHAG00000012193)	camk1da (ENSCHAG00000012217)	cdc123 (ENSCHAG00000012817)	ENSCHAG00000012859	TIMM22 (ENSCHAG00000012880)	ENSCHAG00000012890	myf6 (ENSCHAG00000012902) #21	myf5 (ENSCHAG00000012907) #22	lin7a (ENSCHAG00000012925) #23	ACSS3 (ENSCHAG00000012966) #24	ENSCHAG00000013958	ENSCHAG00000013985	ppfia2 (ENSCHAG00000014083) #25	ENSCHAG00000017004	ENSCHAG00000017023	ENSCHAG00000017045	NUAK1 (ENSCHAG00000017150)	prl2 (ENSCHAG00000017173)	MID1 (ENSCHAG00000017268)	ARHGAP6 (ENSCHAG00000017388)	MSL3 (ENSCHAG00000017515)	ENSCHAG00000017610	PRPS2 (ENSCHAG00000017630)
Otophysi	ANCESTRAL SPECIES	40	ENSGT00390000018775	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00510000047886.b	ENSGT00940000158014 #14	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.b.b.a
Characiphysae	ANCESTRAL SPECIES	67	ENSGT00390000010830	ENSGT00940000165853	ENSGT00390000018775	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000158014 #14	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a.l #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00990000204681	ENSGT00940000158039.h	ENSGT00940000159379	ENSGT00940000153372.A.f
Characiphysae_b	ANCESTRAL SPECIES	161										ENSGT00940000158014 #14	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a.l #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.b.b.a
Characoidei	ANCESTRAL SPECIES	182										ENSGT00940000158014 #14	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a.l #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.b.b.a
Mexicana tetra	MODERN SPECIES	22	ost4 (ENSAMXG00000025270)	ENSAMXG00000043766	agbl5 (ENSAMXG00000001121)	tmem214 (ENSAMXG00000001600)	ENSAMXG00000030619	ENSAMXG00000036395	ENSAMXG00000039430	ENSAMXG00000036999	nav3 (ENSAMXG00000016811) #14	ENSAMXG00000036051	syt1a (ENSAMXG00000000351) #16	pawr (ENSAMXG00000039462) #17	ppp1r12a (ENSAMXG00000000386) #18	rps16 (ENSAMXG00000033866)	myf6 (ENSAMXG00000000425) #21	myf5 (ENSAMXG00000000428) #22	LIN7B (ENSAMXG00000035915) ##23	ppfia2 (ENSAMXG00000006001) #25	llph (ENSAMXG00000030053)	hcls1 (ENSAMXG00000006045)	ENSAMXG00000006063	guca1a (ENSAMXG00000006082)	orc5 (ENSAMXG00000006161)	ENSAMXG00000037520	lhfpl3 (ENSAMXG00000032533)	ENSAMXG00000031350	ENSAMXG00000037828	ndufb2 (ENSAMXG00000006366)	KDM7A (ENSAMXG00000006392)	ENSAMXG00000041110	SEMA3C (ENSAMXG00000006459)
Red-bellied piranha	MODERN SPECIES	150					ENSPNAG00000012785	ENSPNAG00000012773	nav3 (ENSPNAG00000002385) #14	syt1a (ENSPNAG00000012718) #16	ENSPNAG00000012666	pawr (ENSPNAG00000012658) #17	ppp1r12a (ENSPNAG00000012652) #18	ENSPNAG00000012615	rps16 (ENSPNAG00000002321)	ENSPNAG00000012596	myf6 (ENSPNAG00000012583) #21	myf5 (ENSPNAG00000007179) #22	lin7a (ENSPNAG00000012563) #23	ACSS3 (ENSPNAG00000002283) #24	ppfia2 (ENSPNAG00000006898) #25	ENSPNAG00000002170
Electric eel	MODERN SPECIES	309									ENSEEEG00000014336 #14	ENSEEEG00000014337	syt1a (ENSEEEG00000014338) #16	pawr (ENSEEEG00000014348) #17	ppp1r12a (ENSEEEG00000014354) #18	rps16 (ENSEEEG00000014359)	myf6 (ENSEEEG00000014363) #21	myf5 (ENSEEEG00000014364) #22
Channel catfish	MODERN SPECIES	10	cmah (ENSIPUG00000024591)	ENSIPUG00000024585	krr1 (ENSIPUG00000024581)	phlda1 (ENSIPUG00000024577)	nap1l1 (ENSIPUG00000024567)	OSBPL8 (ENSIPUG00000024546) #8	ZDHHC17 (ENSIPUG00000024530) #9	si:dkey-97m3.1 (ENSIPUG00000024524)	ENSIPUG00000024522	nav3 (ENSIPUG00000024518) #14	SYT1 (ENSIPUG00000024511) #16	ENSIPUG00000024510 #18	pawr (ENSIPUG00000024509) #17	ppp1r12a (ENSIPUG00000024502) #18	rps16 (ENSIPUG00000024494)	myf6 (ENSIPUG00000024490) #22	lin7a (ENSIPUG00000024459) #23	acss3 (ENSIPUG00000024454) #24	ppfia2 (ENSIPUG00000024451) #25	llph (ENSIPUG00000024449)	mdm2 (ENSIPUG00000024445)	slc35e3 (ENSIPUG00000024440)	ENSIPUG00000024351	magi2a (ENSIPUG00000024345)	ENSIPUG00000024341	Gnai1 (ENSIPUG00000024333)	CD36 (ENSIPUG00000024330)	SEMA3C (ENSIPUG00000024327)	ENSIPUG00000024237	ENSIPUG00000024236	ENSIPUG00000024234
Cyprinoidei	ANCESTRAL SPECIES	67									ENSGT00510000047886.b.ib	ENSGT00940000158014 #14	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.b.b.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	94	ENSGT00940000153544.b.f	ENSGT00940000157572.a.a.b	ENSGT00940000155997.lb.a.lb.a	ENSGT00940000158409.ab	ENSGT00940000156127.t	ENSGT00390000017990.a	ENSGT00950000182839.B.a.a.k.a ##33	ENSGT00390000002793.d	ENSGT00510000047886.b.ib.a	ENSGT00940000158014.m #14	ENSGT00940000155394.i.a.a #16	ENSGT00390000000406.k #17	ENSGT00940000156120.a.i #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a.j #21	ENSGT00950000182959.a.a.a #22	ENSGT00940000153222.a.a.y #23	ENSGT00940000157479.j #24	ENSGT01050000244900.a.a.a.a.b.bb.m.b #25	ENSGT00940000165344.e	ENSGT00940000158997.k.b	ENSGT00730000111007.a.a.i	ENSGT00940000164333.d	ENSGT00390000009380.a	ENSGT00990000203541.a.a.a.a.a.e.a	ENSGT00940000157862.i	ENSGT00390000004044.b	ENSGT00940000158039.h.b	ENSGT00940000159379.f	ENSGT00940000153372.A.f.k	ENSGT00940000153567.a.a.b.b.a.a
Goldfish	MODERN SPECIES	21	kiss2 (ENSCARG00000050789)	ldhba (ENSCARG00000050805)	slc25a3a (ENSCARG00000004095)	tmpoa (ENSCARG00000004118)	strap (ENSCARG00000004172)	ETNK1 (ENSCARG00000004230)	sox5 (ENSCARG00000004446)	dnai7 (ENSCARG00000007038)	lrmp (ENSCARG00000007098)	bcat1 (ENSCARG00000007169)	syt1a (ENSCARG00000007182) #16	pawr (ENSCARG00000007222) #17	ppp1r12a (ENSCARG00000007240) #18	RPS16 (ENSCARG00000007629)	myf6 (ENSCARG00000007640) #21	myf5 (ENSCARG00000007648) #22	lin7a (ENSCARG00000007657) #23	ACSS3 (ENSCARG00000007733) #24	ppfia2 (ENSCARG00000008457) #25	llph (ENSCARG00000011062)	hcls1 (ENSCARG00000011091)	GOLGB1 (ENSCARG00000011371)	guca1a (ENSCARG00000011420)	orc5 (ENSCARG00000011442)	lhfpl3 (ENSCARG00000011623)	ENSCARG00000011636	ndufb2 (ENSCARG00000011648)	KDM7A (ENSCARG00000011660)	SEMA3C (ENSCARG00000011766)	cd36 (ENSCARG00000012095)	gnai1 (ENSCARG00000012213)
Cyprininae_a	ANCESTRAL SPECIES	174											ENSGT00940000158014.n #14	ENSGT00940000155394.i.a.b #16	ENSGT00390000000406.l #17	ENSGT00940000156120.a.j #18	ENSGT00950000182959.a.b.b.a.j.b #21	ENSGT00950000182959.a.a.a #22	ENSGT00950000182959.a.b.b.a.i #21	ENSGT00950000182959.a.a.b #22	ENSGT00940000153222.a.a.y #23	ENSGT00940000157479.j #24	ENSGT01050000244900.a.a.a.a.b.bb.m.b #25	ENSGT00940000165344.e	ENSGT00940000158997.k.b	ENSGT00730000111007.a.a.i	ENSGT00940000164333.d	ENSGT00390000009380.a	ENSGT00990000203541.a.a.a.a.a.e.a	ENSGT00940000157862.i	ENSGT00390000004044.b	ENSGT00940000158039.h.b	ENSGT00940000159379.f
Common carp reference	MODERN SPECIES	36	cacna1c (ENSCCRG00000079889)	ENSCCRG00000064902 ##33	ENSCCRG00000076072	ENSCCRG00000024630	ENSCCRG00000025696	ENSCCRG00000038194	ENSCCRG00000003610	ENSCCRG00000082448	ENSCCRG00000075007	nav3 (ENSCCRG00000003878) #14	syt1a (ENSCCRG00000060462) #16	pawr (ENSCCRG00000017856) #17	ppp1r12a (ENSCCRG00000031966) #18	ENSCCRG00000031955	myf6 (ENSCCRG00000052812) #21	myf5 (ENSCCRG00000031947) #22	ENSCCRG00000002290	lin7a (ENSCCRG00000070932) #23	ACSS3 (ENSCCRG00000072702) #24	ppfia2 (ENSCCRG00000070855) #25	llph (ENSCCRG00000057054)	hcls1 (ENSCCRG00000001201)	ENSCCRG00000001214	guca1a (ENSCCRG00000070485)	lhfpl3 (ENSCCRG00000058495)	orc5 (ENSCCRG00000001236)	ENSCCRG00000039177	ndufb2 (ENSCCRG00000072248)	ENSCCRG00000035796	ENSCCRG00000033639	gnai1 (ENSCCRG00000033760)
Golden-line barbel	MODERN SPECIES	7	ENSSGRG00000041165	stk38l (ENSSGRG00000041187)	LRTM2 (ENSSGRG00000041682)	dcp1b (ENSSGRG00000041683)	cacna1c (ENSSGRG00000041723)	ENSSGRG00000041780	napepld (ENSSGRG00000041781)	rassf8b (ENSSGRG00000041783) ##33	ints13 (ENSSGRG00000041790)	ENSSGRG00000041934	nav3 (ENSSGRG00000041936) #14	syt1a (ENSSGRG00000041938) #16	pawr (ENSSGRG00000041965) #17	ppp1r12a (ENSSGRG00000041970) #18	rps16 (ENSSGRG00000042013)	myf5 (ENSSGRG00000042014) #22	lin7a (ENSSGRG00000042025) #23	ACSS3 (ENSSGRG00000042041) #24	ppfia2 (ENSSGRG00000042069) #25	llph (ENSSGRG00000042864)	ENSSGRG00000042867	guca1a (ENSSGRG00000042871)	orc5 (ENSSGRG00000042873)	LHFPL3 (ENSSGRG00000042874)	ENSSGRG00000042875	ENSSGRG00000042879	ndufb2 (ENSSGRG00000042881)	ENSSGRG00000042882	SEMA3C (ENSSGRG00000042887)	cd36 (ENSSGRG00000043071)	gnai1 (ENSSGRG00000043151)
Cyprininae	ANCESTRAL SPECIES	481															ENSGT00950000182959.a.b.b.a.i #21	ENSGT00950000182959.a.a.b #22	ENSGT00940000153222.a.a.z #23	ENSGT00940000157479.i #24	ENSGT01050000244900.a.a.a.a.b.bb.n #25	ENSGT00940000165344.f	ENSGT00940000158997.k.a	ENSGT00730000111007.a.a.j	ENSGT00940000164333.c	ENSGT00390000009380.b	ENSGT00990000203541.a.a.a.a.a.f	ENSGT00990000203541.a.a.a.a.a.e.b	ENSGT00940000157862.j	ENSGT00390000004044.a	ENSGT00940000158039.h.a	ENSGT00940000159379.e	ENSGT00940000153372.A.f.l
Cyprininae_a	ANCESTRAL SPECIES	174									ENSGT00940000158014.n #14	ENSGT00940000155394.i.a.b #16	ENSGT00390000000406.l #17	ENSGT00940000156120.a.j #18	ENSGT00950000182959.a.b.b.a.j.b #21	ENSGT00950000182959.a.a.a #22	ENSGT00950000182959.a.b.b.a.i #21	ENSGT00950000182959.a.a.b #22	ENSGT00940000153222.a.a.y #23	ENSGT00940000157479.j #24	ENSGT01050000244900.a.a.a.a.b.bb.m.b #25	ENSGT00940000165344.e	ENSGT00940000158997.k.b	ENSGT00730000111007.a.a.i	ENSGT00940000164333.d	ENSGT00390000009380.a	ENSGT00990000203541.a.a.a.a.a.e.a	ENSGT00940000157862.i	ENSGT00390000004044.b	ENSGT00940000158039.h.b	ENSGT00940000159379.f	ENSGT00940000153372.A.f.k	ENSGT00940000153567.a.a.b.b.a.a
Golden-line barbel	MODERN SPECIES	717											nav3 (ENSSGRG00000014524) #14	syt1a (ENSSGRG00000015011) #16	pawr (ENSSGRG00000015136) #17	rps16 (ENSSGRG00000015151)	myf6 (ENSSGRG00000015176) #21	myf5 (ENSSGRG00000015178) #22	lin7a (ENSSGRG00000015179) #23	ACSS3 (ENSSGRG00000015180) #24
Goldfish	MODERN SPECIES	33	rassf8b (ENSCARG00000016908) ##33	ints13 (ENSCARG00000016844)	ENSCARG00000016831	ENSCARG00000016819	ENSCARG00000016808	ENSCARG00000016803	ENSCARG00000016796	ENSCARG00000016787	ENSCARG00000016739	nav3 (ENSCARG00000014159) #14	syt1a (ENSCARG00000014000) #16	pawr (ENSCARG00000013984) #17	ppp1r12a (ENSCARG00000013705) #18	rps16 (ENSCARG00000013649)	myf6 (ENSCARG00000013643) #21	myf5 (ENSCARG00000013638) #22	lin7a (ENSCARG00000013634) #23	ENSCARG00000013631	ENSCARG00000013627	ENSCARG00000013625	BRD1 (ENSCARG00000013600)	zbed4 (ENSCARG00000013589)	alg12 (ENSCARG00000013585)	creld2 (ENSCARG00000013490)	ENSCARG00000013472	ENSCARG00000013469	mdm2 (ENSCARG00000013438)	slc35e3 (ENSCARG00000013424)	magi2a (ENSCARG00000010141)	nup107 (ENSCARG00000008124)	gnai1 (ENSCARG00000007987)
Zebrafish	MODERN SPECIES	19	dcp1b (ENSDARG00000045484)	cacna1c (ENSDARG00000008398)	napepld (ENSDARG00000009252)	ints13 (ENSDARG00000011764)	rassf8b (ENSDARG00000045485) ##33	ENSDARG00000055245	ENSDARG00000114678	ENSDARG00000090038	ENSDARG00000090277	nav3 (ENSDARG00000005476) #14	syt1a (ENSDARG00000030614) #16	pawr (ENSDARG00000045486) #17	ppp1r12a (ENSDARG00000010784) #18	rps16 (ENSDARG00000045487)	myf6 (ENSDARG00000029830) #21	myf5 (ENSDARG00000007277) #22	lin7a (ENSDARG00000013414) #23	ACSS3 (ENSDARG00000032218) #24	ppfia2 (ENSDARG00000013000) #25	llph (ENSDARG00000055360)	hcls1 (ENSDARG00000012729)	ENSDARG00000061951	guca1a (ENSDARG00000010454)	orc5 (ENSDARG00000021579)	lhfpl3 (ENSDARG00000021595)	KMT2E (ENSDARG00000007523)	ndufb2 (ENSDARG00000045490)	kdm7aa (ENSDARG00000018111)	SEMA3C (ENSDARG00000034300)	cd36 (ENSDARG00000032639)	gnai1 (ENSDARG00000021647)
Euteleosteomorpha	ANCESTRAL SPECIES	30					ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00990000204681	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00530000063113.A.q	ENSGT00390000006367.c
Acanthomorphata	ANCESTRAL SPECIES	47	ENSGT00950000183052.b.c.b.a	ENSGT00940000158003	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.b.a.a
Euacanthomorphacea	ANCESTRAL SPECIES	18	ENSGT00940000159081	ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.a.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Percomorphaceae	ANCESTRAL SPECIES	19	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Percomorphaceae_B	ANCESTRAL SPECIES	21	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Percomorphaceae_C	ANCESTRAL SPECIES	22	ENSGT00940000172707.b	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Percomorphaceae_D	ANCESTRAL SPECIES	22	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Carangaria	ANCESTRAL SPECIES	22	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Pleuronectoidei	ANCESTRAL SPECIES	16	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT00940000155368	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Turbot	MODERN SPECIES	11	pmch (ENSSMAG00000022672)	igf1 (ENSSMAG00000005115)	ENSSMAG00000030625	ENSSMAG00000005081	btbd11a (ENSSMAG00000005012)	ENSSMAG00000004964	ENSSMAG00000005003	tnnt2c (ENSSMAG00000004942)	ENSSMAG00000004931	ENSSMAG00000004880	ENSSMAG00000004819	ENSSMAG00000004787 #16	ENSSMAG00000004775 #17	ENSSMAG00000032576	myf6 (ENSSMAG00000024612) #21	myf5 (ENSSMAG00000004563) #22	ENSSMAG00000004633 #18	lin7a (ENSSMAG00000004519) #23	ACSS3 (ENSSMAG00000004487) #24	ppfia2 (ENSSMAG00000004417) #25	ENSSMAG00000030237	ENSSMAG00000032625	ENSSMAG00000004385	rhno1 (ENSSMAG00000032963)	ENSSMAG00000004338	ENSSMAG00000004364	ENSSMAG00000004315	ptn (ENSSMAG00000004300)	chrm2a (ENSSMAG00000004285)	mtpn (ENSSMAG00000026919)	ENSSMAG00000004262
Tongue sole	MODERN SPECIES	18	klhl42 (ENSCSEG00000004627)	elapor2b (ENSCSEG00000004623)	tspan9b (ENSCSEG00000004608)	amdhd1 (ENSCSEG00000004613)	cry1a (ENSCSEG00000004597)	MTERF2 (ENSCSEG00000004606)	syt10 (ENSCSEG00000004582)	ENSCSEG00000004570	cyb5r3 (ENSCSEG00000004558)	syt1a (ENSCSEG00000004537) #16	pawr (ENSCSEG00000004529) #17	ppp1r12a (ENSCSEG00000004475) #18	rps16 (ENSCSEG00000004454)	rps16 (ENSCSEG00000004450)	myf6 (ENSCSEG00000004440) #21	myf5 (ENSCSEG00000004433) #22	lin7a (ENSCSEG00000004421) #23	ACSS3 (ENSCSEG00000004396) #24	TMEM19 (ENSCSEG00000004390)	kics2 (ENSCSEG00000004388)	srgap1b (ENSCSEG00000004374)	AVPR1A (ENSCSEG00000004367)	acot14 (ENSCSEG00000004355)	ENSCSEG00000004343	ENSCSEG00000004334	cwf19l1 (ENSCSEG00000004325)	dmtf1 (ENSCSEG00000004319)	tmem243b (ENSCSEG00000004311)	meig1 (ENSCSEG00000004307)	dclre1c (ENSCSEG00000004303)	cpm (ENSCSEG00000004301)
Carangaria_A	ANCESTRAL SPECIES	21	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Barramundi perch	MODERN SPECIES	34	hmgcrb (ENSLCAG00010003972)	CERT1 (ENSLCAG00010003603)	SV2C (ENSLCAG00010003544)	F2RL2 (ENSLCAG00010003542)	f2r2.1 (ENSLCAG00010003537)	f2rl1.1 (ENSLCAG00010003533)	f2rl1.2 (ENSLCAG00010003531)	ch25hl2 (ENSLCAG00010003527)	ENSLCAG00010003294	cyb5r3 (ENSLCAG00010003205)	syt1a (ENSLCAG00010003197) #16	pawr (ENSLCAG00010003184) #17	ppp1r12a (ENSLCAG00010003115) #18	rps16 (ENSLCAG00010003081)	myf6 (ENSLCAG00010003076) #21	myf5 (ENSLCAG00010003070) #22	lin7a (ENSLCAG00010003066) #23	ACSS3 (ENSLCAG00010003060) #24
Seriola	ANCESTRAL SPECIES	9	ENSGT00730000111164	ENSGT00390000012080	ENSGT00530000063539.b	ENSGT01020000230394.e.a.a.a.a.b	ENSGT00940000156680.b	ENSGT00990000203615.a.a.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b.c	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Yellowtail amberjack	MODERN SPECIES	2908								ENSSLDG00000019169	cyb5r3 (ENSSLDG00000019154)	syt1a (ENSSLDG00000019130) #16	pawr (ENSSLDG00000019114) #17	ENSSLDG00000019080 #18	ppp1r12a (ENSSLDG00000019041) #18	rps16 (ENSSLDG00000019014)	myf6 (ENSSLDG00000018996) #21	myf5 (ENSSLDG00000018969) #22	lin7a (ENSSLDG00000018950) #23	ACSS3 (ENSSLDG00000018882) #24	ppfia2 (ENSSLDG00000018811) #25	ENSSLDG00000018758	ENSSLDG00000018608	foxm1 (ENSSLDG00000018534)	rhno1 (ENSSLDG00000018518)	TULP3 (ENSSLDG00000018502)	ENSSLDG00000018485	ptn (ENSSLDG00000018471)	chrm2a (ENSSLDG00000018456)	mtpn (ENSSLDG00000018435)	ENSSLDG00000018423	ENSSLDG00000018412	SEMA3C (ENSSLDG00000018375)
Greater amberjack	MODERN SPECIES	60	UPF2 (ENSSDUG00000017244)	slc35e3 (ENSSDUG00000017364)	nup107 (ENSSDUG00000017402)	mdm2 (ENSSDUG00000017495)	plxnb2a.1 (ENSSDUG00000017517)	abcc9 (ENSSDUG00000017622)	kcnj8 (ENSSDUG00000017965)	syt10 (ENSSDUG00000018002)	ENSSDUG00000018031	cyb5r3 (ENSSDUG00000018106)	syt1a (ENSSDUG00000018131) #16	pawr (ENSSDUG00000018156) #17	ppp1r12a (ENSSDUG00000018184) #18	rps16 (ENSSDUG00000018274)	myf6 (ENSSDUG00000018309) #21	myf5 (ENSSDUG00000018287) #22	lin7a (ENSSDUG00000018320) #23	ACSS3 (ENSSDUG00000018359) #24	ppfia2 (ENSSDUG00000018476) #25	ENSSDUG00000018657	foxm1 (ENSSDUG00000018732)	rhno1 (ENSSDUG00000018757)	TULP3 (ENSSDUG00000018775)	ENSSDUG00000018796	ENSSDUG00000018819	ptn (ENSSDUG00000018862)	ENSSDUG00000018870	chrm2a (ENSSDUG00000018876)	mtpn (ENSSDUG00000018885)	ENSSDUG00000018905	ENSSDUG00000018914
Anabantaria	ANCESTRAL SPECIES	21	ENSGT00940000159081	ENSGT00940000163513	ENSGT00950000183169.A.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Zig-zag eel	MODERN SPECIES	15	pmch (ENSMAMG00000015727)	igf1 (ENSMAMG00000015704)	ENSMAMG00000015670	btbd11a (ENSMAMG00000015616)	ENSMAMG00000015580	tnnt2c (ENSMAMG00000015546)	ENSMAMG00000015509	ENSMAMG00000024270	ENSMAMG00000015433	ENSMAMG00000015393	ENSMAMG00000015373 #16	ENSMAMG00000015337 #17	ppp1r12a (ENSMAMG00000015240) #18	ENSMAMG00000015224	myf6 (ENSMAMG00000015217) #21	myf5 (ENSMAMG00000015202) #22	lin7a (ENSMAMG00000015174) #23	ACSS3 (ENSMAMG00000015114) #24	ppfia2 (ENSMAMG00000014966) #25	ENSMAMG00000014909	ENSMAMG00000014899	rhno1 (ENSMAMG00000014885)	ENSMAMG00000014877	ENSMAMG00000014845	ptn (ENSMAMG00000014825)	chrm2a (ENSMAMG00000025277)	mtpn (ENSMAMG00000014764)	ENSMAMG00000014753	ENSMAMG00000014716	ENSMAMG00000014241	ENSMAMG00000014171
Anabantoidei	ANCESTRAL SPECIES	21	ENSGT00940000159081	ENSGT00940000163513	ENSGT00950000183169.A.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000157779	ENSGT00940000158580	ENSGT01040000240400.c.a.b.a.a.d.a.b.b	ENSGT00940000155878	ENSGT00940000168658	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT01040000240400.c.a.b.a.a.d.a.b.a	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831	ENSGT00940000176985
Climbing perch	MODERN SPECIES	14	igf1 (ENSATEG00000023026)	ENSATEG00000023044	ENSATEG00000029039	btbd11a (ENSATEG00000023064)	ENSATEG00000023083	tnnt2c (ENSATEG00000023096)	ENSATEG00000023107	ENSATEG00000026602	ENSATEG00000023121	ENSATEG00000023152	ENSATEG00000023170 #16	ENSATEG00000023210 #17	ENSATEG00000023226 #18	ENSATEG00000023236	myf6 (ENSATEG00000023242) #21	myf5 (ENSATEG00000023249) #22	lin7a (ENSATEG00000023252) #23	ACSS3 (ENSATEG00000023260) #24	ppfia2 (ENSATEG00000023284) #25	ENSATEG00000023298	ENSATEG00000025485	ENSATEG00000023308	ENSATEG00000023314	ENSATEG00000023329	ENSATEG00000023340	ENSATEG00000023343	ENSATEG00000029926	ENSATEG00000028577	ENSATEG00000023359	dyrk2 (ENSATEG00000023365)	ENSATEG00000023375
Siamese fighting fish	MODERN SPECIES	20	nup37 (ENSBSLG00000006190)	parpbp (ENSBSLG00000006209)	pmch (ENSBSLG00000006216)	igf1 (ENSBSLG00000006224)	ENSBSLG00000006232	btbd11a (ENSBSLG00000006250)	cry1a (ENSBSLG00000007173)	syt10 (ENSBSLG00000007302)	ENSBSLG00000007321	cyb5r3 (ENSBSLG00000007400)	syt1a (ENSBSLG00000007799) #16	pawr (ENSBSLG00000007919) #17	ppp1r12a (ENSBSLG00000007997) #18	rps16 (ENSBSLG00000008793)	myf6 (ENSBSLG00000008938) #21	myf5 (ENSBSLG00000008998) #22	LIN7B (ENSBSLG00000009073) ##23	ACSS3 (ENSBSLG00000009122) #24	ppfia2 (ENSBSLG00000009838) #25	dclre1c (ENSBSLG00000010562)	cpm (ENSBSLG00000010758)	ENSBSLG00000010788	TRHDE (ENSBSLG00000010858)	ENSBSLG00000011190	ENSBSLG00000011210	ENSBSLG00000011225	ENSBSLG00000011241	dyrk2 (ENSBSLG00000011249)	ENSBSLG00000011257	ENSBSLG00000011261	ENSBSLG00000011268
Eupercaria	ANCESTRAL SPECIES	21	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Tetraodontidae	ANCESTRAL SPECIES	17	ENSGT00390000006747	ENSGT00950000183117.a.a	ENSGT00940000158254	ENSGT00940000155067.b.a	ENSGT00940000155067.a	ENSGT00390000002730.e.b	ENSGT00950000183113.b.b.c.b	ENSGT00940000160161.e.a	ENSGT00940000153414.A	ENSGT00940000157821.h.a	ENSGT00940000160821	ENSGT00940000163946.a	ENSGT00940000155180.b.b	ENSGT00940000165907	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479.f #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00390000006367.c	ENSGT00940000155057.wb	ENSGT00940000153567.a.a.a	ENSGT00940000153372.A.f	ENSGT00940000159379	ENSGT00940000168487	ENSGT00940000158940.a	ENSGT00390000007640.a	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00940000158155	ENSGT00730000112347	ENSGT00940000158804
Fugu	MODERN SPECIES	9	gnptab (ENSTRUG00000012120)	chpt1 (ENSTRUG00000011969)	mybpc1 (ENSTRUG00000011461)	ENSTRUG00000031004	spic (ENSTRUG00000011424)	atp6v1e1b (ENSTRUG00000011314)	ADA2 (ENSTRUG00000011247)	GALNT8 (ENSTRUG00000011109)	rad51ap1 (ENSTRUG00000024004)	fgf6b (ENSTRUG00000011078)	fgf23 (ENSTRUG00000011062)	tigarb (ENSTRUG00000011015)	ccnd2b (ENSTRUG00000010895)	ENSTRUG00000010878	myf6 (ENSTRUG00000010842) #21	myf5 (ENSTRUG00000010781) #22	lin7a (ENSTRUG00000010674) #23	ACSS3 (ENSTRUG00000010633) #24	ppfia2 (ENSTRUG00000016246) #25	si:dkey-97m3.1 (ENSTRUG00000016219)	ENSTRUG00000016140	ENSTRUG00000016110	SEMA3C (ENSTRUG00000015957)	mtpn (ENSTRUG00000030378)	chrm2a (ENSTRUG00000020657)	ptn (ENSTRUG00000015924)	ENSTRUG00000015891	ENSTRUG00000029244	TULP3 (ENSTRUG00000015873)	rhno1 (ENSTRUG00000022380)	foxm1 (ENSTRUG00000015839)
Tetraodon	MODERN SPECIES	11	ENSTNIG00000011419	washc3 (ENSTNIG00000011417)	dram1 (ENSTNIG00000001389)	gnptab (ENSTNIG00000011416)	chpt1 (ENSTNIG00000011415)	mybpc1 (ENSTNIG00000011414)	spic (ENSTNIG00000000056)	atp6v1e1b (ENSTNIG00000011413)	ADA2 (ENSTNIG00000011412)	fgf6b (ENSTNIG00000011411)	fgf23 (ENSTNIG00000011410)	tigarb (ENSTNIG00000001586)	CCND2 (ENSTNIG00000011409)	ENSTNIG00000011408	myf6 (ENSTNIG00000011407) #21	myf5 (ENSTNIG00000011406) #22	LIN7B (ENSTNIG00000011405) ##23	ENSTNIG00000000595 #24	ppfia2 (ENSTNIG00000011404) #25	si:dkey-97m3.1 (ENSTNIG00000011403)	ENSTNIG00000011402	ENSTNIG00000011401	cd36 (ENSTNIG00000011400)	SEMA3C (ENSTNIG00000011399)	ENSTNIG00000011398	chrm2a (ENSTNIG00000011397)	ptn (ENSTNIG00000011396)	ENSTNIG00000002223	foxm1 (ENSTNIG00000011394)	ENSTNIG00000011393	ergic2 (ENSTNIG00000011392)
Eupecaria_A	ANCESTRAL SPECIES	21	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Ballan wrasse	MODERN SPECIES	288	ENSLBEG00000021449	ttll1 (ENSLBEG00000021464)	pacsin2 (ENSLBEG00000021510)	arfgap3 (ENSLBEG00000021563)	IKBIP (ENSLBEG00000021638)	ENSLBEG00000021657	tnnt2c (ENSLBEG00000021670)	syt10 (ENSLBEG00000021731)	ENSLBEG00000021784	cyb5r3 (ENSLBEG00000021856)	syt1a (ENSLBEG00000021895) #16	pawr (ENSLBEG00000021925) #17	ppp1r12a (ENSLBEG00000021962) #18	rps16 (ENSLBEG00000022009)	myf6 (ENSLBEG00000022039) #21	myf5 (ENSLBEG00000022115) #22	lin7a (ENSLBEG00000022140) #23	ACSS3 (ENSLBEG00000022189) #24
Eupecaria_B	ANCESTRAL SPECIES	21	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Perciformes	ANCESTRAL SPECIES	18	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Cottioidei	ANCESTRAL SPECIES	19	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT00980000202035	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Lumpfish	MODERN SPECIES	15	ENSCLMG00005010584	ENSCLMG00005022740	FUT9 (ENSCLMG00005022735)	tcp11l2 (ENSCLMG00005022733)	ppp1r12a (ENSCLMG00005022725) #18	pawr (ENSCLMG00005022721) #17	ENSCLMG00005022719	syt1a (ENSCLMG00005022718) #16	cyb5r3 (ENSCLMG00005022705)	ENSCLMG00005022685	ENSCLMG00005022678	syt10 (ENSCLMG00005022677)	tnnt2c (ENSCLMG00005022676)	rps16 (ENSCLMG00005022675)	myf6 (ENSCLMG00005022674) #21	myf5 (ENSCLMG00005022673) #22	lin7a (ENSCLMG00005022672) #23	ACSS3 (ENSCLMG00005022661) #24	ppfia2 (ENSCLMG00005022654) #25	ENSCLMG00005022642	foxm1 (ENSCLMG00005022640)	rhno1 (ENSCLMG00005022638)	TULP3 (ENSCLMG00005022637)	ENSCLMG00005022636	ENSCLMG00005022635	ptn (ENSCLMG00005022634)	chrm2a (ENSCLMG00005022632)	mtpn (ENSCLMG00005022629)	ENSCLMG00005022627	SEMA3C (ENSCLMG00005022619)	cd36 (ENSCLMG00005022530)
Perciformes_a	ANCESTRAL SPECIES	19	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Channel bull blenny	MODERN SPECIES	15	TMCC3 (ENSCGOG00000022948)	eri1 (ENSCGOG00000022952)	LAMB1 (ENSCGOG00000022966)	dclre1c (ENSCGOG00000023371)	meig1 (ENSCGOG00000023503)	tmem243b (ENSCGOG00000023504)	tnnt2c (ENSCGOG00000002697)	syt10 (ENSCGOG00000002710)	ENSCGOG00000002901	cyb5r3 (ENSCGOG00000005612)	syt1a (ENSCGOG00000005760) #16	pawr (ENSCGOG00000005900) #17	ppp1r12a (ENSCGOG00000005924) #18	rps16 (ENSCGOG00000006422)	myf6 (ENSCGOG00000006445) #21	myf5 (ENSCGOG00000006451) #22	lin7a (ENSCGOG00000006454) #23	ACSS3 (ENSCGOG00000006462) #24	ppfia2 (ENSCGOG00000006725) #25	ENSCGOG00000011470	foxm1 (ENSCGOG00000012088)	rhno1 (ENSCGOG00000012090)	TULP3 (ENSCGOG00000012093)	ENSCGOG00000012109	ptn (ENSCGOG00000012115)	chrm2a (ENSCGOG00000012120)	mtpn (ENSCGOG00000012123)	ENSCGOG00000012127	SEMA3C (ENSCGOG00000012145)	cd36 (ENSCGOG00000012920)	ENSCGOG00000013774
Pike perch	MODERN SPECIES	28	pmch (ENSSLUG00000005227)	IGF-I (ENSSLUG00000004805)	ENSSLUG00000004758	btbd11a (ENSSLUG00000004616)	cry1a (ENSSLUG00000003675)	MTERF2 (ENSSLUG00000003583)	syt10 (ENSSLUG00000003569)	ENSSLUG00000003558	ENSSLUG00000002793	cyb5r3 (ENSSLUG00000002598)	syt1a (ENSSLUG00000002503) #16	pawr (ENSSLUG00000002488) #17	ppp1r12a (ENSSLUG00000002356) #18	rps16 (ENSSLUG00000002321)	myf6 (ENSSLUG00000002312) #21	Myf5 (ENSSLUG00000002308) #22	lin7a (ENSSLUG00000002301) #23	ACSS3 (ENSSLUG00000001953) #24	ppfia2 (ENSSLUG00000001812) #25	ENSSLUG00000001721	washc3 (ENSSLUG00000001679)	dram1 (ENSSLUG00000001669)	gnptab (ENSSLUG00000001622)	chpt1 (ENSSLUG00000020879)	mybpc1 (ENSSLUG00000018517)	ENSSLUG00000018418	spic (ENSSLUG00000018413)	atp6v1e1b (ENSSLUG00000018403)	ADA2 (ENSSLUG00000018400)	GALNT8 (ENSSLUG00000018206)	rad51ap1 (ENSSLUG00000018171)
Eupecaria_C	ANCESTRAL SPECIES	18	ENSGT01100000263491.a.b.a.a.a.a.b.s.b	ENSGT00400000022326.b.a.b.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT00980000202035	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Gilthead seabream	MODERN SPECIES	5	pmch (ENSSAUG00010015234)	igf1 (ENSSAUG00010015109)	ENSSAUG00010015101	btbd11a (ENSSAUG00010014766)	cry1a (ENSSAUG00010012268)	ENSSAUG00010012243	tnnt2c (ENSSAUG00010012240)	syt10 (ENSSAUG00010012236)	ENSSAUG00010020501	cyb5r3 (ENSSAUG00010020421)	syt1a (ENSSAUG00010020377) #16	pawr (ENSSAUG00010020373) #17	ppp1r12a (ENSSAUG00010020166) #18	rps16 (ENSSAUG00010020153)	myf6 (ENSSAUG00010020152) #21	myf5 (ENSSAUG00010020150) #22	lin7a (ENSSAUG00010020149) #23	ACSS3 (ENSSAUG00010019831) #24	ppfia2 (ENSSAUG00010017685) #25	ENSSAUG00010017530	foxm1 (ENSSAUG00010017515)	rhno1 (ENSSAUG00010017512)	ENSSAUG00010017509	TULP3 (ENSSAUG00010017500)	ENSSAUG00010017491	ENSSAUG00010017488	ENSSAUG00010017483	ENSSAUG00010017479	ENSSAUG00010017476	ptn (ENSSAUG00010017470)	chrm2a (ENSSAUG00010017466)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	22	ENSGT01100000263491.a.b.a.a.a.a.b.s.b	ENSGT00400000022326.b.a.b.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Large yellow croaker	MODERN SPECIES	491	btbd11a (ENSLCRG00005017547)	cry1a (ENSLCRG00005017690)	MTERF2 (ENSLCRG00005017798)	tnnt2c (ENSLCRG00005017799)	syt10 (ENSLCRG00005017801)	ENSLCRG00005017806	cyb5r3 (ENSLCRG00005017871)	syt1a (ENSLCRG00005018056) #16	ENSLCRG00005018060	ENSLCRG00005018062	pawr (ENSLCRG00005018063) #17	ENSLCRG00005018065	ppp1r12a (ENSLCRG00005018071) #18	rps16 (ENSLCRG00005018085)	myf6 (ENSLCRG00005018091) #21	myf5 (ENSLCRG00005018093) #22	lin7a (ENSLCRG00005018096) #23	ACSS3 (ENSLCRG00005018098) #24	ppfia2 (ENSLCRG00005018255) #25	ENSLCRG00005019228	foxm1 (ENSLCRG00005019230)	rhno1 (ENSLCRG00005019231)	TULP3 (ENSLCRG00005019232)	ENSLCRG00005019233	ENSLCRG00005019241	eri1 (ENSLCRG00005019243)	dclre1c (ENSLCRG00005019246)	meig1 (ENSLCRG00005019249)	tmem243b (ENSLCRG00005010956)	ENSLCRG00005010957	ENSLCRG00005010958
European seabass	MODERN SPECIES	23	pah (ENSDLAG00005022732)	ENSDLAG00005022698	ENSDLAG00005027036	ENSDLAG00005022693	ENSDLAG00005022472	ENSDLAG00005022457	ENSDLAG00005022452	ENSDLAG00005022430	ENSDLAG00005022300	ENSDLAG00005022253	ENSDLAG00005022245 #16	PAWR (ENSDLAG00005022241) #17	ppp1r12a (ENSDLAG00005028115) #18	ENSDLAG00005022222	myf6 (ENSDLAG00005034355) #21	myf5 (ENSDLAG00005022213) #22	lin7a (ENSDLAG00005031546) #23	ACSS3 (ENSDLAG00005021975) #24	ppfia2 (ENSDLAG00005020955) #25	ENSDLAG00005020737	ENSDLAG00005020722	ENSDLAG00005020708	ENSDLAG00005028213	ptn (ENSDLAG00005020678)	chrm2a (ENSDLAG00005032814)	mtpn (ENSDLAG00005027317)	ENSDLAG00005026666	ENSDLAG00005020518	CD36 (ENSDLAG00005020211)	ENSDLAG00005020099	ENSDLAG00005019967
Ovalentaria	ANCESTRAL SPECIES	22	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Ovalentaria_B	ANCESTRAL SPECIES	23	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Pomacentridae	ANCESTRAL SPECIES	59	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00530000063817.b.b	ENSGT00940000155455.g	ENSGT00940000156419.b	ENSGT00940000154709.a.a	ENSGT00940000158899.bb.b	ENSGT00940000158899.cb	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Pomacentridae_A	ANCESTRAL SPECIES	58	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00530000063817.b.b	ENSGT00940000155455.g	ENSGT00940000156419.b	ENSGT00940000154709.a.a	ENSGT00940000158899.cb	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Amphiprion	ANCESTRAL SPECIES	19	ENSGT00940000168896	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00530000063817.b.b	ENSGT00940000155455.g	ENSGT00940000156419.b	ENSGT00940000154709.a.a	ENSGT00940000158899.cb	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Orange clownfish	MODERN SPECIES	13	ENSAPEG00000021659	igf1 (ENSAPEG00000021610)	ENSAPEG00000021575	ENSAPEG00000021556	cry1a (ENSAPEG00000021519)	btbd11a (ENSAPEG00000021482)	tnnt2c (ENSAPEG00000021437)	syt10 (ENSAPEG00000021420)	ENSAPEG00000021411	cyb5r3 (ENSAPEG00000021367)	syt1a (ENSAPEG00000021322) #16	pawr (ENSAPEG00000021309) #17	ppp1r12a (ENSAPEG00000021244) #18	rps16 (ENSAPEG00000021214)	myf6 (ENSAPEG00000021158) #21	myf5 (ENSAPEG00000021137) #22	lin7a (ENSAPEG00000021115) #23	ACSS3 (ENSAPEG00000021054) #24	ppfia2 (ENSAPEG00000020985) #25	ENSAPEG00000020865	foxm1 (ENSAPEG00000020793)	rhno1 (ENSAPEG00000020771)	TULP3 (ENSAPEG00000020752)	ENSAPEG00000020727	ENSAPEG00000020705	ptn (ENSAPEG00000020677)	chrm2a (ENSAPEG00000020661)	mtpn (ENSAPEG00000020630)	ENSAPEG00000020602	SEMA3C (ENSAPEG00000020577)	cd36 (ENSAPEG00000020487)
Spiny chromis	MODERN SPECIES	1975														rps16 (ENSAPOG00000018869)	myf6 (ENSAPOG00000018965) #21	myf5 (ENSAPOG00000018995) #22	lin7a (ENSAPOG00000019025) #23	ACSS3 (ENSAPOG00000019111) #24
Bicolor damselfish	MODERN SPECIES	310											syt1a (ENSSPAG00000007874) #16	pawr (ENSSPAG00000007892) #17	ppp1r12a (ENSSPAG00000007917) #18	rps16 (ENSSPAG00000008089)	myf6 (ENSSPAG00000008107) #21	myf5 (ENSSPAG00000008117) #22	lin7a (ENSSPAG00000008137) #23	ACSS3 (ENSSPAG00000008160) #24	ppfia2 (ENSSPAG00000008238) #25	ENSSPAG00000008316	foxm1 (ENSSPAG00000008351)	rhno1 (ENSSPAG00000008397)	TULP3 (ENSSPAG00000008407)	ENSSPAG00000008458	ENSSPAG00000008474	ptn (ENSSPAG00000008499)	chrm2a (ENSSPAG00000008507)
Cichlidae	ANCESTRAL SPECIES	24	ENSGT00940000159081	ENSGT00940000172707.b	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093.i	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	21	ENSGT00940000159081	ENSGT00940000172707.b	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093.i	ENSGT00940000158804.m	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	10	ENSGT00940000159081	ENSGT00940000172707.b	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093.i	ENSGT00940000158804.n	ENSGT00940000158804.m	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Haplochromini	ANCESTRAL SPECIES	9	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093.i	ENSGT00940000158804.n.b	ENSGT00940000158804.m	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Burton s mouthbrooder	MODERN SPECIES	326									ENSHBUG00000012255	cyb5r3 (ENSHBUG00000012236)	syt1a (ENSHBUG00000012192) #16	pawr (ENSHBUG00000012169) #17	ENSHBUG00000012146	rps16 (ENSHBUG00000011868)	myf6 (ENSHBUG00000011840) #21	myf5 (ENSHBUG00000011829) #22	lin7a (ENSHBUG00000000328) #23	ACSS3 (ENSHBUG00000011792) #24	ppfia2 (ENSHBUG00000011753) #25	ENSHBUG00000011518	foxm1 (ENSHBUG00000011509)	rhno1 (ENSHBUG00000011503)	foxm1 (ENSHBUG00000011493)	TULP3 (ENSHBUG00000011480)	ENSHBUG00000011412	ENSHBUG00000011400	ptn (ENSHBUG00000011360)	chrm2a (ENSHBUG00000011351)	mtpn (ENSHBUG00000011342)	ENSHBUG00000011331	SEMA3C (ENSHBUG00000011319)
Haplochromini_A	ANCESTRAL SPECIES	9	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093.i	ENSGT00940000158804.n.b	ENSGT00940000158804.m	ENSGT00730000112347	ENSGT00940000158155	ENSGT00940000155368.ab.a	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379
P. nyererei	MODERN SPECIES	399									ENSPNYG00000018682	cyb5r3 (ENSPNYG00000018648)	syt1a (ENSPNYG00000018615) #16	pawr (ENSPNYG00000018605) #17	ppp1r12a (ENSPNYG00000018399) #18	rps16 (ENSPNYG00000018328)	myf6 (ENSPNYG00000018314) #21	myf5 (ENSPNYG00000018301) #22	lin7a (ENSPNYG00000018284) #23	ACSS3 (ENSPNYG00000018233) #24	ppfia2 (ENSPNYG00000018167) #25	ENSPNYG00000018091	foxm1 (ENSPNYG00000018069)	rhno1 (ENSPNYG00000018048)	TULP3 (ENSPNYG00000018015)	ENSPNYG00000018003	ENSPNYG00000017991	ptn (ENSPNYG00000017983)	chrm2a (ENSPNYG00000017969)	mtpn (ENSPNYG00000017967)	ENSPNYG00000017958	SEMA3C (ENSPNYG00000017904)	cd36 (ENSPNYG00000017687)
Haplochromini_B	ANCESTRAL SPECIES	11	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000158804.n.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093.i	ENSGT00940000158804.n.b	ENSGT00940000158804.m	ENSGT00730000112347	ENSGT00940000158155	ENSGT00940000155368.ab.a	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379
Zebra mbuna	MODERN SPECIES	1099	pmch (ENSMZEG00005001251)	igf1 (ENSMZEG00005001284)	ENSMZEG00005001313	btbd11a (ENSMZEG00005001355)	cry1a (ENSMZEG00005001451)	MTERF2 (ENSMZEG00005001466)	syt10 (ENSMZEG00005001603)	ENSMZEG00005001628	cyb5r3 (ENSMZEG00005001636)	syt1a (ENSMZEG00005001660) #16	pawr (ENSMZEG00005001704) #17	ppp1r12a (ENSMZEG00005001744) #18	foxm1 (ENSMZEG00005001943)	rps16 (ENSMZEG00005001975)	myf6 (ENSMZEG00005001995) #21	myf5 (ENSMZEG00005002005) #22	lin7a (ENSMZEG00005002013) #23	ACSS3 (ENSMZEG00005002036) #24	ppfia2 (ENSMZEG00005002099) #25	ENSMZEG00005002179	foxm1 (ENSMZEG00005002229)	foxm1 (ENSMZEG00005002268)	rhno1 (ENSMZEG00005002308)	TULP3 (ENSMZEG00005002320)	ENSMZEG00005002354	ENSMZEG00005002378	opn5 (ENSMZEG00005002393)	ENSMZEG00005002407	cd2ap (ENSMZEG00005002420)	tnfrsf21 (ENSMZEG00005002452)	ENSMZEG00005002465
Eastern happy	MODERN SPECIES	8	pmch (ENSACLG00000016802)	igf1 (ENSACLG00000016815)	ENSACLG00000016841	btbd11a (ENSACLG00000016936)	cry1a (ENSACLG00000017110)	MTERF2 (ENSACLG00000017181)	syt10 (ENSACLG00000017353)	ENSACLG00000017416	cyb5r3 (ENSACLG00000017472)	syt1a (ENSACLG00000017513) #16	pawr (ENSACLG00000017548) #17	ppp1r12a (ENSACLG00000017614) #18	foxm1 (ENSACLG00000017856)	rps16 (ENSACLG00000017963)	myf6 (ENSACLG00000017983) #21	myf5 (ENSACLG00000017991) #22	lin7a (ENSACLG00000018011) #23	ACSS3 (ENSACLG00000018059) #24	ppfia2 (ENSACLG00000018429) #25	ENSACLG00000018723	foxm1 (ENSACLG00000018814)	foxm1 (ENSACLG00000018922)	rhno1 (ENSACLG00000018940)	TULP3 (ENSACLG00000018961)	ENSACLG00000019033	ENSACLG00000019049	ptn (ENSACLG00000019074)	chrm2a (ENSACLG00000019090)	mtpn (ENSACLG00000019115)	ENSACLG00000019126	SEMA3C (ENSACLG00000019139)
Lyretail cichlid	MODERN SPECIES	291	btbd11a (ENSNBRG00000010944)	ENSNBRG00000010937	MTERF2 (ENSNBRG00000010933)	cry1a (ENSNBRG00000010898)	tnnt2c (ENSNBRG00000010879)	syt10 (ENSNBRG00000010856)	ENSNBRG00000010848	ENSNBRG00000010794	cyb5r3 (ENSNBRG00000010756)	syt1a (ENSNBRG00000010739) #16	pawr (ENSNBRG00000010725) #17	ppp1r12a (ENSNBRG00000010670) #18	ENSNBRG00000010659	rps16 (ENSNBRG00000010637)	myf6 (ENSNBRG00000010629) #21	myf5 (ENSNBRG00000010621) #22	lin7a (ENSNBRG00000010602) #23	ENSNBRG00000010588	ACSS3 (ENSNBRG00000010540) #24	ppfia2 (ENSNBRG00000010460) #25	ENSNBRG00000010443	foxm1 (ENSNBRG00000010396)	ENSNBRG00000010385	TULP3 (ENSNBRG00000010353)	ENSNBRG00000010331	ENSNBRG00000010318	ptn (ENSNBRG00000010305)	chrm2a (ENSNBRG00000010300)	mtpn (ENSNBRG00000010292)	ENSNBRG00000010278	SEMA3C (ENSNBRG00000010236)
Nile tilapia	MODERN SPECIES	8	ENSONIG00000017799	btbd11a (ENSONIG00000017796)	cry1a (ENSONIG00000000075)	MTERF2 (ENSONIG00000020695)	tnnt2c (ENSONIG00000020696)	ENSONIG00000000001	syt10 (ENSONIG00000000002)	syt1a (ENSONIG00000000003) #16	pawr (ENSONIG00000028232) #17	ppp1r12a (ENSONIG00000000005) #18	foxm1 (ENSONIG00000027574)	foxm1 (ENSONIG00000000082)	ENSONIG00000031149	rps16 (ENSONIG00000000006)	myf6 (ENSONIG00000000007) #21	myf5 (ENSONIG00000038625) #22	lin7a (ENSONIG00000000078) #23	ACSS3 (ENSONIG00000000079) #24	ppfia2 (ENSONIG00000000080) #25	ENSONIG00000000081	foxm1 (ENSONIG00000042685)	rhno1 (ENSONIG00000000083)	TULP3 (ENSONIG00000000084)	ENSONIG00000030976	ENSONIG00000000085	ptn (ENSONIG00000000086)	chrm2a (ENSONIG00000020697)	ENSONIG00000030324	mtpn (ENSONIG00000041390)	ENSONIG00000000088	SEMA3C (ENSONIG00000000089)
Midas cichlid	MODERN SPECIES	1331												pawr (ENSACIG00000013438) #17	ppp1r12a (ENSACIG00000013397) #18	rps16 (ENSACIG00000013386)	myf6 (ENSACIG00000013331) #21	myf5 (ENSACIG00000013314) #22	lin7a (ENSACIG00000013298) #23	ACSS3 (ENSACIG00000013258) #24	ppfia2 (ENSACIG00000013195) #25	ENSACIG00000013105
Atherinomorphae	ANCESTRAL SPECIES	21	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Oryzias	ANCESTRAL SPECIES	20	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g.c	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a.d #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Oryzias_b	ANCESTRAL SPECIES	19	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g.c	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a.d #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Javanese ricefish	MODERN SPECIES	15	ENSOJAG00000023539	igf1 (ENSOJAG00000023545)	ENSOJAG00000023553	btbd11a (ENSOJAG00000023574)	ENSOJAG00000023593	ENSOJAG00000023595	cry1a (ENSOJAG00000023629)	MTERF2 (ENSOJAG00000023694)	syt10 (ENSOJAG00000023697)	ENSOJAG00000023700	syt1a (ENSOJAG00000023710) #16	pawr (ENSOJAG00000023718) #17	ppp1r12a (ENSOJAG00000023721) #18	rps16 (ENSOJAG00000023733)	myf6 (ENSOJAG00000023735) #21	myf5 (ENSOJAG00000023736) #22	lin7a (ENSOJAG00000023737) #23	ACSS3 (ENSOJAG00000023742) #24	ppfia2 (ENSOJAG00000023762) #25	foxm1 (ENSOJAG00000023805)	ENSOJAG00000023806	ENSOJAG00000023808	ENSOJAG00000023813	ptn (ENSOJAG00000023820)	chrm2a (ENSOJAG00000023822)	ENSOJAG00000023823	ENSOJAG00000023825	ENSOJAG00000014770	nup50 (ENSOJAG00000014777)	kiaa0930 (ENSOJAG00000014799)	fbxo7 (ENSOJAG00000014895)
Indian medaka	MODERN SPECIES	2	ENSOMEG00000003411	igf1 (ENSOMEG00000003424)	ENSOMEG00000003451	btbd11a (ENSOMEG00000003530)	cry1a (ENSOMEG00000003568)	ENSOMEG00000003581	tnnt2c (ENSOMEG00000003593)	syt10 (ENSOMEG00000003610)	ENSOMEG00000003669	cyb5r3 (ENSOMEG00000003698)	syt1a (ENSOMEG00000003714) #16	pawr (ENSOMEG00000003730) #17	ppp1r12a (ENSOMEG00000003801) #18	rps16 (ENSOMEG00000003840)	myf6 (ENSOMEG00000003855) #21	myf5 (ENSOMEG00000003862) #22	lin7a (ENSOMEG00000003884) #23	ACSS3 (ENSOMEG00000003964) #24	ppfia2 (ENSOMEG00000004094) #25	ENSOMEG00000004125	foxm1 (ENSOMEG00000004150)	ENSOMEG00000004155	TULP3 (ENSOMEG00000004185)	ENSOMEG00000004208	ptn (ENSOMEG00000000096)	chrm2a (ENSOMEG00000000098)	ENSOMEG00000004244	ENSOMEG00000004249	ENSOMEG00000004254	SEMA3C (ENSOMEG00000004303)	cd36 (ENSOMEG00000004403)
Oryzias_a	ANCESTRAL SPECIES	15	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g.c	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a.d #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.k.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	52												pawr (ENSOSIG00000003677) #17	ppp1r12a (ENSOSIG00000003628) #18	rps16 (ENSOSIG00000003413)	myf6 (ENSOSIG00000003401) #21	myf5 (ENSOSIG00000003391) #22	lin7a (ENSOSIG00000003379) #23	ACSS3 (ENSOSIG00000022239) #24	ppfia2 (ENSOSIG00000022032) #25	ENSOSIG00000021947	ENSOSIG00000021938	ptn (ENSOSIG00000021933)	chrm2a (ENSOSIG00000021926)	ENSOSIG00000021920	ENSOSIG00000021442	cd36 (ENSOSIG00000021399)	ENSOSIG00000021381	ENSOSIG00000021252	si:dkey-97m3.1 (ENSOSIG00000021193)	ergic2 (ENSOSIG00000021149)	KDM7A (ENSOSIG00000021128)
Chinese medaka	MODERN SPECIES	51	ENSOSIG00000008239	ENSOSIG00000008238	ENSOSIG00000008237	igf1 (ENSOSIG00000008154)	btbd11a (ENSOSIG00000008093)	cry1a (ENSOSIG00000007925)	MTERF2 (ENSOSIG00000007922)	tnnt2c (ENSOSIG00000007920)	syt10 (ENSOSIG00000007919)	ENSOSIG00000007916	ENSOSIG00000007911	syt1a (ENSOSIG00000007909) #16	pawr (ENSOSIG00000007906) #17	ppp1r12a (ENSOSIG00000007904) #18	myf6 (ENSOSIG00000007902) #21	myf5 (ENSOSIG00000007901) #22	lin7a (ENSOSIG00000007898) #23	ACSS3 (ENSOSIG00000007896) #24	RPS16 (ENSOSIG00000007851)	ppfia2 (ENSOSIG00000005522) #25	ENSOSIG00000005445	foxm1 (ENSOSIG00000005386)	ENSOSIG00000005383	ptn (ENSOSIG00000005378)	chrm2a (ENSOSIG00000005373)	ENSOSIG00000005369	SEMA3C (ENSOSIG00000005314)	cd36 (ENSOSIG00000005295)	ENSOSIG00000005228	ENSOSIG00000005174	si:dkey-97m3.1 (ENSOSIG00000005054)
Japanese Medaka HdrR	MODERN SPECIES	15	igf1 (ENSORLG00000016443)	ENSORLG00000027418	cox6b2 (ENSORLG00000016425)	btbd11a (ENSORLG00000016422)	ENSORLG00000016390	cry1a (ENSORLG00000016410)	tnnt2c (ENSORLG00000016386)	syt10 (ENSORLG00000016381)	ENSORLG00000016372	cyb5r3 (ENSORLG00000018656)	syt1a (ENSORLG00000016339) #16	pawr (ENSORLG00000026995) #17	ppp1r12a (ENSORLG00000016314) #18	rps16 (ENSORLG00000016271)	myf6 (ENSORLG00000016261) #21	myf5 (ENSORLG00000016257) #22	lin7a (ENSORLG00000030538) #23	ACSS3 (ENSORLG00000016249) #24	ppfia2 (ENSORLG00000016236) #25	ENSORLG00000016174	foxm1 (ENSORLG00000016140)	rhno1 (ENSORLG00000026209)	TULP3 (ENSORLG00000016129)	ENSORLG00000016118	ENSORLG00000024838	ptn (ENSORLG00000016099)	chrm2a (ENSORLG00000030214)	ENSORLG00000023855	ENSORLG00000029110	SEMA3C (ENSORLG00000016082)	cd36 (ENSORLG00000016066)
Cyprinodontiformes	ANCESTRAL SPECIES	19	ENSGT00940000168896	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Aplocheiloidei	ANCESTRAL SPECIES	14	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.a.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Mangrove rivulus	MODERN SPECIES	19	igf1 (ENSKMAG00000012960)	ENSKMAG00000012934	ENSKMAG00000012909	btbd11a (ENSKMAG00000012822)	cry1a (ENSKMAG00000012604)	tnnt2c (ENSKMAG00000012574)	syt10 (ENSKMAG00000012546)	ENSKMAG00000012499	cyb5r3 (ENSKMAG00000012463)	syt1a (ENSKMAG00000012419) #16	ENSKMAG00000012380	pawr (ENSKMAG00000012360) #17	ppp1r12a (ENSKMAG00000012279) #18	rps16 (ENSKMAG00000012230)	myf6 (ENSKMAG00000012210) #21	myf5 (ENSKMAG00000012199) #22	lin7a (ENSKMAG00000012178) #23	ACSS3 (ENSKMAG00000012129) #24	ppfia2 (ENSKMAG00000011901) #25	ENSKMAG00000011752	foxm1 (ENSKMAG00000011726)	rhno1 (ENSKMAG00000011710)	TULP3 (ENSKMAG00000011684)	ENSKMAG00000011655	ENSKMAG00000011642	ptn (ENSKMAG00000011624)	chrm2a (ENSKMAG00000011608)	ENSKMAG00000011593	ENSKMAG00000011574	SEMA3C (ENSKMAG00000011493)	cd36 (ENSKMAG00000011439)
Turquoise killifish	MODERN SPECIES	1610	cry1a (ENSNFUG00015018834)	tnnt2c (ENSNFUG00015018733)	SYT10 (ENSNFUG00015018728)	ENSNFUG00015018727	ENSNFUG00015018708	CYB5R3 (ENSNFUG00015018146)	SYT1A (ENSNFUG00015018114) #16	ENSNFUG00015018105	PAWR (ENSNFUG00015018098) #17	ppp1r12a (ENSNFUG00015018078) #18	ENSNFUG00015018069	RPS16 (ENSNFUG00015018063)	ENSNFUG00015018060	ENSNFUG00015018056	myf6 (ENSNFUG00015018050) #21	myf5 (ENSNFUG00015018047) #22	lin7a (ENSNFUG00015018040) #23	ENSNFUG00015018037	ACSS3 (ENSNFUG00015017298) #24	ENSNFUG00015017269	ppfia2 (ENSNFUG00015013697) #25	ENSNFUG00015013563	CU571169.1 (ENSNFUG00015012519)	foxm1 (ENSNFUG00015012456)	CU571169.5 (ENSNFUG00015012448)	TULP3 (ENSNFUG00015012432)	TRIM35 (ENSNFUG00015012422)	ptn (ENSNFUG00015012413)	CHRM2A (ENSNFUG00015012408)	ENSNFUG00015012405	ENSNFUG00015012400
Cyprinodontoidei	ANCESTRAL SPECIES	20	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00840000130048.b	ENSGT00940000162287.B.a.c	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Poeciliinae	ANCESTRAL SPECIES	19	ENSGT00940000162287.B.a.c	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Poecilia	ANCESTRAL SPECIES	29	ENSGT00940000162287.B.a.c	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000153567.a.a.a
NAME_6	ANCESTRAL SPECIES	55	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT00940000155368.q	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Amazon molly	MODERN SPECIES	320	ENSPFOG00000017948	igf1 (ENSPFOG00000017930)	ENSPFOG00000017913	btbd11a (ENSPFOG00000017882)	ENSPFOG00000017877	cry1a (ENSPFOG00000017846)	tnnt2c (ENSPFOG00000020848)	syt10 (ENSPFOG00000017820)	ENSPFOG00000017778	cyb5r3 (ENSPFOG00000017742)	syt1a (ENSPFOG00000017713) #16	pawr (ENSPFOG00000017689) #17	ppp1r12a (ENSPFOG00000017528) #18	rps16 (ENSPFOG00000017508)	myf6 (ENSPFOG00000017498) #21	myf5 (ENSPFOG00000017488) #22	lin7a (ENSPFOG00000017480) #23	ACSS3 (ENSPFOG00000017417) #24	ppfia2 (ENSPFOG00000017112) #25	ENSPFOG00000022280 #25	ENSPFOG00000016986	foxm1 (ENSPFOG00000016962)	rhno1 (ENSPFOG00000016961)	TULP3 (ENSPFOG00000016911)	ENSPFOG00000016905	ENSPFOG00000016883	ptn (ENSPFOG00000016870)	chrm2a (ENSPFOG00000016867)	ENSPFOG00000016863	ENSPFOG00000016861	SEMA3C (ENSPFOG00000016799)
Sailfin molly	MODERN SPECIES	9										cyb5r3 (ENSPLAG00000011214)	syt1a (ENSPLAG00000011246) #16	pawr (ENSPLAG00000011257) #17	ppp1r12a (ENSPLAG00000011399) #18	rps16 (ENSPLAG00000011432)	myf6 (ENSPLAG00000011443) #21	myf5 (ENSPLAG00000011536) #22	lin7a (ENSPLAG00000011553) #23	ACSS3 (ENSPLAG00000011623) #24	ppfia2 (ENSPLAG00000011834) #25	ENSPLAG00000011929	foxm1 (ENSPLAG00000011940)	rhno1 (ENSPLAG00000011951)	TULP3 (ENSPLAG00000011999)	ENSPLAG00000012034	ENSPLAG00000012066	ptn (ENSPLAG00000012078)	chrm2a (ENSPLAG00000012100)	ENSPLAG00000012114	ENSPLAG00000012137
Guppy	MODERN SPECIES	454	snrpf (ENSPREG00000022635)	amdhd1 (ENSPREG00000022628)	tspan9b (ENSPREG00000022623)	ENSPREG00000022605	ENSPREG00000022592	cry1a (ENSPREG00000022582)	ENSPREG00000022576	syt10 (ENSPREG00000022565)	ENSPREG00000022557	cyb5r3 (ENSPREG00000022548)	syt1a (ENSPREG00000022536) #16	pawr (ENSPREG00000022522) #17	ppp1r12a (ENSPREG00000022493) #18	rps16 (ENSPREG00000022479)	myf6 (ENSPREG00000022475) #21	myf5 (ENSPREG00000022457) #22	lin7a (ENSPREG00000022447) #23	ACSS3 (ENSPREG00000022433) #24	ppfia2 (ENSPREG00000022413) #25	ENSPREG00000022397	foxm1 (ENSPREG00000022385)	rhno1 (ENSPREG00000022379)	TULP3 (ENSPREG00000022359)	ENSPREG00000022348	ENSPREG00000022336	ptn (ENSPREG00000022330)	chrm2a (ENSPREG00000022325)	ENSPREG00000022320	ENSPREG00000022313	SEMA3C (ENSPREG00000022300)	cd36 (ENSPREG00000022234)
Platyfish	MODERN SPECIES	8	ENSXMAG00000017362	igf1 (ENSXMAG00000028624)	ENSXMAG00000026515	ENSXMAG00000024762	btbd11a (ENSXMAG00000025507)	cyb5r3 (ENSXMAG00000017411)	ENSXMAG00000017426	syt10 (ENSXMAG00000017449)	ENSXMAG00000019615	cry1a (ENSXMAG00000017466)	syt1a (ENSXMAG00000017468) #16	pawr (ENSXMAG00000026362) #17	ppp1r12a (ENSXMAG00000017534) #18	rps16 (ENSXMAG00000030077)	myf6 (ENSXMAG00000017492) #21	myf5 (ENSXMAG00000017496) #22	lin7a (ENSXMAG00000026246) #23	ACSS3 (ENSXMAG00000017548) #24	ENSXMAG00000024730	ppfia2 (ENSXMAG00000027756) #25	ENSXMAG00000017594	foxm1 (ENSXMAG00000029688)	ENSXMAG00000024470	TULP3 (ENSXMAG00000017658)	ENSXMAG00000022584	ENSXMAG00000026341	ptn (ENSXMAG00000029793)	chrm2a (ENSXMAG00000017689)	ENSXMAG00000029537	mtpn (ENSXMAG00000004863)	ENSXMAG00000027095
NAME_4	ANCESTRAL SPECIES	16	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000162287.B.a.c	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a
Mummichog	MODERN SPECIES	2417									ENSFHEG00000021284	cyb5r3 (ENSFHEG00000021318)	syt1a (ENSFHEG00000021375) #16	pawr (ENSFHEG00000021387) #17	ppp1r12a (ENSFHEG00000021437) #18	rps16 (ENSFHEG00000021489)	myf6 (ENSFHEG00000021493) #21	myf5 (ENSFHEG00000021507) #22	lin7a (ENSFHEG00000021555) #23	ACSS3 (ENSFHEG00000021602) #24	ppfia2 (ENSFHEG00000021683) #25	ENSFHEG00000021695	foxm1 (ENSFHEG00000021721)	rhno1 (ENSFHEG00000021747)	ENSFHEG00000021764	ENSFHEG00000021805
Sheepshead minnow	MODERN SPECIES	119	ENSCVAG00000016009	igf1 (ENSCVAG00000016044)	ENSCVAG00000016092	ENSCVAG00000016098	btbd11a (ENSCVAG00000016113)	cry1a (ENSCVAG00000016128)	ENSCVAG00000016131	syt10 (ENSCVAG00000016202)	ENSCVAG00000016230	cyb5r3 (ENSCVAG00000016259)	syt1a (ENSCVAG00000016341) #16	pawr (ENSCVAG00000016350) #17	ppp1r12a (ENSCVAG00000016377) #18	rps16 (ENSCVAG00000016397)	myf6 (ENSCVAG00000016409) #21	myf5 (ENSCVAG00000016428) #22	lin7a (ENSCVAG00000016461) #23	ACSS3 (ENSCVAG00000016481) #24	ppfia2 (ENSCVAG00000016666) #25	ENSCVAG00000016685	foxm1 (ENSCVAG00000016692)	rhno1 (ENSCVAG00000016698)	ENSCVAG00000016726	ENSCVAG00000016742	ptn (ENSCVAG00000016747)	chrm2a (ENSCVAG00000016771)
Tiger tail seahorse	MODERN SPECIES	433	ccnd2b (ENSHCOG00000017500)	llph (ENSHCOG00000017511)	pex26 (ENSHCOG00000017529)	hcls1 (ENSHCOG00000017538)	ENSHCOG00000017542	guca1a (ENSHCOG00000000480)	orc5 (ENSHCOG00000017584)	lhfpl3 (ENSHCOG00000017594)	ENSHCOG00000017619	cyb5r3 (ENSHCOG00000017648)	syt1a (ENSHCOG00000017684) #16	pawr (ENSHCOG00000017688) #17	ppp1r12a (ENSHCOG00000017732) #18	rps16 (ENSHCOG00000017762)	myf6 (ENSHCOG00000017768) #21	myf5 (ENSHCOG00000017783) #22	lin7a (ENSHCOG00000017797) #23	ACSS3 (ENSHCOG00000017835) #24	ppfia2 (ENSHCOG00000017898) #25	ENSHCOG00000017941	foxm1 (ENSHCOG00000017947)	ENSHCOG00000017961	TULP3 (ENSHCOG00000017974)	ENSHCOG00000017982	ENSHCOG00000018040	syt10 (ENSHCOG00000018057)	tnnt2c (ENSHCOG00000018063)	cry1a (ENSHCOG00000018111)	btbd11a (ENSHCOG00000018163)	ENSHCOG00000018199	igf1 (ENSHCOG00000018270)
Pinecone sodierfish	MODERN SPECIES	15	ENSMMDG00005018912	btbd11a (ENSMMDG00005018917)	cry1a (ENSMMDG00005018951)	MTERF2 (ENSMMDG00005020073)	tnnt2c (ENSMMDG00005020074)	syt10 (ENSMMDG00005020079)	ENSMMDG00005020084	ENSMMDG00005020134	cyb5r3 (ENSMMDG00005020515)	syt1a (ENSMMDG00005020740) #16	pawr (ENSMMDG00005020744) #17	ppp1r12a (ENSMMDG00005020751) #18	rps16 (ENSMMDG00005020764)	ENSMMDG00005020765	myf6 (ENSMMDG00005020767) #21	myf5 (ENSMMDG00005020770) #22	lin7a (ENSMMDG00005020771) #23	ACSS3 (ENSMMDG00005020784) #24	ppfia2 (ENSMMDG00005021115) #25	ENSMMDG00005023019	foxm1 (ENSMMDG00005023025)	rhno1 (ENSMMDG00005023026)	TULP3 (ENSMMDG00005023029)	ENSMMDG00005023031	ptn (ENSMMDG00005023033)	chrm2a (ENSMMDG00005023036)	mtpn (ENSMMDG00005023039)	ENSMMDG00005023040	SEMA3C (ENSMMDG00005023044)	cd36 (ENSMMDG00005023059)	ENSMMDG00005023078
Cod	MODERN SPECIES	10	ENSGMOG00000001796	ENSGMOG00000033135	ENSGMOG00000025896	ENSGMOG00000028214	ENSGMOG00000033285	ENSGMOG00000020106	ENSGMOG00000025216	ENSGMOG00000028316	ENSGMOG00000022683	ENSGMOG00000024377	ENSGMOG00000033325	ENSGMOG00000025784	ENSGMOG00000029095	ENSGMOG00000028669	myf6 (ENSGMOG00000025107) #21	myf5 (ENSGMOG00000016963) #22	lin7a (ENSGMOG00000009243) #23	ACSS3 (ENSGMOG00000015350) #24	ppfia2 (ENSGMOG00000015273) #25	ENSGMOG00000028792	ENSGMOG00000026403	ENSGMOG00000012976	ENSGMOG00000033609	ENSGMOG00000010827	ENSGMOG00000010761	ENSGMOG00000035710	ENSGMOG00000019538	ENSGMOG00000030401	ENSGMOG00000014077 #15	ENSGMOG00000013785	ENSGMOG00000026213
Protacanthopterygii	ANCESTRAL SPECIES	23	ENSGT00940000156334.a.b	ENSGT00390000005848	ENSGT00940000157275.a	ENSGT01030000234982	ENSGT00940000154649.A.r	ENSGT00400000022326.b.a.a	ENSGT00940000156120.a #18	ENSGT00390000000406 #17	ENSGT00940000155394.i.a #16	ENSGT00940000153962.b	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000158899	ENSGT00940000154709.a.a	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00530000063113.A.q	ENSGT00390000006367.c.w	ENSGT00940000155057.vb.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	90	ENSGT00400000022326.b.a.a.a	ENSGT00390000018272.j.b	ENSGT01100000263556.a.a.q.d.r	ENSGT00940000156120.a.g #18	ENSGT00940000164178.h.a.a.b	ENSGT00390000000406.i.b #17	ENSGT00940000155394.i.a.f #16	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.i	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a.f #22	ENSGT00950000182959.a.a.e #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479.c #24	ENSGT00940000157479.d #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344.d	ENSGT00940000158997.e.b	ENSGT00730000111007.a.a.l	ENSGT00940000165344.c	ENSGT00940000158997.f	ENSGT00730000111007.a.a.k.b	ENSGT00940000164333.e	ENSGT00390000009380.e.a	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044
Salmoninae_a	ANCESTRAL SPECIES	11	ENSGT00400000022326.b.a.a.a	ENSGT00390000018272.j.a	ENSGT01100000263549.k	ENSGT00940000167339	ENSGT01100000263556.a.a.q.d.r.a.b	ENSGT00940000156120.a.g #18	ENSGT00940000164178.h.a.a.b	ENSGT00390000000406.i.b #17	ENSGT00940000153962.b.e.a	ENSGT01050000244951.a.b.a.b.b.g	ENSGT01040000240385.A.b.b.a.b.a.a.a.b.b	ENSGT00940000158899.i.a	ENSGT00940000154709.a.a.f	ENSGT00940000164822.eb	ENSGT00390000013067.l.i	ENSGT00950000182959.a.a.e #22	ENSGT00940000153222.a.a.bb #23	ENSGT00940000157479.d #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344.d	ENSGT00940000158997.e.b	ENSGT00730000111007.a.a.l	ENSGT00940000164333.e	ENSGT00390000009380.e.a	ENSGT00990000203541.a.a.a.a.a	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.b	ENSGT00940000157862	ENSGT00390000004044.g	ENSGT00940000158039.h	ENSGT00530000063113.A.q.g	ENSGT00390000006367.c.w.a
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT01030000234589.h.f.b.b.a.a.a.b.b.b.a	ENSGT00940000175977	ENSGT01100000263549.k.a	ENSGT01100000263556.a.a.q.d.r.a.b.c.b	ENSGT00940000156120.a.g #18	ENSGT00940000164178.h.a.a.b	ENSGT00390000000406.i.b #17	ENSGT00940000153962.b.e.a	ENSGT01050000244951.a.b.a.b.b.g	ENSGT01040000240385.A.b.b.a.b.a.a.a.b.b	ENSGT00940000158899.i.a	ENSGT00940000154709.a.a.f	ENSGT00940000164822.eb	ENSGT00390000013067.l.i	ENSGT00950000182959.a.b.b.a.d #21	ENSGT00950000182959.a.a.e #22	ENSGT00940000153222.a.a.bb #23	ENSGT01050000244900.a.a.a.a.b.bb.i.b #25	ENSGT00940000165344.d.a	ENSGT00940000158997.e.b.b	ENSGT00730000111007.a.a.l.a	ENSGT00940000164333.e	ENSGT00390000009380.e.a	ENSGT00990000203541.a.a.a.a.a.l	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.b	ENSGT00940000157862.u.a	ENSGT00390000004044.g	ENSGT00940000158039.h.v	ENSGT00530000063113.A.q.g	ENSGT00390000006367.c.w.a	ENSGT00940000155057.vb.a.a
Oncorhynchus_a	ANCESTRAL SPECIES	64	ENSGT01090000260033.b.g.b.a.b.a.b.b.b.b.b	ENSGT01030000234589.h.f.b.b.a.a.a.b.b.b.a	ENSGT00940000175977	ENSGT01100000263549.k.a	ENSGT00940000156120.a.g #18	ENSGT00940000164178.h.a.a.b	ENSGT00390000000406.i.b #17	ENSGT00940000153962.b.e.a	ENSGT01050000244951.a.b.a.b.b.g	ENSGT01040000240385.A.b.b.a.b.a.a.a.b.b	ENSGT00940000158899.i.a	ENSGT00940000154709.a.a.f	ENSGT00940000164822.eb	ENSGT00390000013067.l.i	ENSGT00950000182959.a.b.b.a.d #21	ENSGT00950000182959.a.a.e #22	ENSGT00940000153222.a.a.bb #23	ENSGT01050000244900.a.a.a.a.b.bb.i.b #25	ENSGT00940000165344.d.a	ENSGT00940000158997.e.b.b	ENSGT00730000111007.a.a.l.a	ENSGT00940000164333.e	ENSGT00390000009380.e.a	ENSGT00990000203541.a.a.a.a.a.l	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.b	ENSGT00940000157862.u.a	ENSGT00390000004044.g	ENSGT00940000158039.h.v	ENSGT00530000063113.A.q.g.c	ENSGT00390000006367.c.w.a	ENSGT00940000155057.vb.a.a
Coho salmon	MODERN SPECIES	29	ENSOKIG00005012743	ENSOKIG00005012738	ppp1r12a (ENSOKIG00005012576) #18	ENSOKIG00005012494	PAWR (ENSOKIG00005012477) #17	syt1a (ENSOKIG00005012455) #16	cyb5r3 (ENSOKIG00005011252)	ENSOKIG00005011075	ENSOKIG00005011037	ENSOKIG00005011026	ENSOKIG00005011022	ENSOKIG00005010999	ENSOKIG00005010986	RPS16 (ENSOKIG00005010963)	myf6 (ENSOKIG00005010942) #21	myf5 (ENSOKIG00005010902) #22	lin7a (ENSOKIG00005010877) #23	ppfia2 (ENSOKIG00005007307) #25	llph (ENSOKIG00005007027)	hcls1 (ENSOKIG00005006199)	ENSOKIG00005006075	guca1a (ENSOKIG00005006054)	orc5 (ENSOKIG00005005916)	LHFPL3 (ENSOKIG00005005900)	ENSOKIG00005005890	ENSOKIG00005005876	ndufb2 (ENSOKIG00005005858)	ENSOKIG00005005773	ERGIC2 (ENSOKIG00005005657)	si:dkey-97m3.1 (ENSOKIG00005005611)	ENSOKIG00005005591
Chinook salmon	MODERN SPECIES	6	ENSOTSG00005006373	ENSOTSG00005006371	ENSOTSG00005006370	ENSOTSG00005006367	zgc:113263 (ENSOTSG00005006366)	ENSOTSG00005006364	cyb5r3 (ENSOTSG00005004729)	ENSOTSG00005004585	ENSOTSG00005004581	ENSOTSG00005004580	syt10 (ENSOTSG00005004578)	tnnt2c (ENSOTSG00005004568)	ENSOTSG00005004562	rps16 (ENSOTSG00005004561)	myf6 (ENSOTSG00005004560) #21	myf5 (ENSOTSG00005004458) #22	lin7a (ENSOTSG00005004455) #23	ENSOTSG00005004450	guca1a (ENSOTSG00005004448)	orc5 (ENSOTSG00005004419)	lhfpl3 (ENSOTSG00005004416)	ENSOTSG00005004414	ENSOTSG00005004413	ndufb2 (ENSOTSG00005004411)	KDM7A (ENSOTSG00005004384)	ergic2 (ENSOTSG00005004353)	si:dkey-97m3.1 (ENSOTSG00005004350)	ENSOTSG00005004348	ENSOTSG00005004346	ENSOTSG00005004345	cd36 (ENSOTSG00005004312)
Rainbow trout	MODERN SPECIES	13	ENSOMYG00000015882	ENSOMYG00000015860	ENSOMYG00000015664 #18	ENSOMYG00000015530	ENSOMYG00000015520 #17	ENSOMYG00000015469 #16	ENSOMYG00000015363	ENSOMYG00000015082	ENSOMYG00000014997	ENSOMYG00000014985	ENSOMYG00000014972	ENSOMYG00000014963	ENSOMYG00000014948	myf6 (ENSOMYG00000014934) #21	ENSOMYG00000074848	Myf5 (ENSOMYG00000014917) #22	lin7a (ENSOMYG00000014904) #23	ENSOMYG00000050420	ENSOMYG00000004734	ppfia2 (ENSOMYG00000014291) #25	llph (ENSOMYG00000013636)	hcls1 (ENSOMYG00000013975)	guca1a (ENSOMYG00000013888)	ENSOMYG00000013697	orc5 (ENSOMYG00000077068)	lhfpl3 (ENSOMYG00000013630)	ENSOMYG00000074943	ENSOMYG00000013624	ENSOMYG00000013553	ndufb2 (ENSOMYG00000013505)	ENSOMYG00000013418
Salmo	ANCESTRAL SPECIES	25	ENSGT01100000263549.k	ENSGT00940000167339.r	ENSGT01100000263556.a.a.q.d.r.a.b.b	ENSGT00940000156120.a.g #18	ENSGT00940000164178.h.a.a.b	ENSGT00390000000406.i.b #17	ENSGT00940000155394.i.a.f.b #16	ENSGT00940000153962.b.e.a	ENSGT01050000244951.a.b.a.b.b.g	ENSGT01040000240385.A.b.b.a.b.a.a.a.b.b	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.f	ENSGT00940000164822.eb.a	ENSGT00390000013067.l.i	ENSGT00950000182959.a.b.b.a.e #21	ENSGT00950000182959.a.a.e #22	ENSGT00940000153222.a.a.bb #23	ENSGT00940000157479.d #24	ENSGT01050000244900.a.a.a.a.b.bb.h #25	ENSGT00940000165344.c	ENSGT00940000158997.e.b	ENSGT00730000111007.a.a.k.b	ENSGT00940000164333.e	ENSGT00390000009380.e.a	ENSGT00990000203541.a.a.a.a.a.j	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.b	ENSGT00940000157862.s.b	ENSGT00940000158039.h.t	ENSGT01040000240385.A.a.b.b.f	ENSGT00940000157862.t	ENSGT00390000004044.h
River trout	MODERN SPECIES	38	ENSSTUG00000030624	ENSSTUG00000030613	ENSSTUG00000030667	ppp1r12a (ENSSTUG00000030696) #18	ENSSTUG00000030863	pawr (ENSSTUG00000030899) #17	syt1a (ENSSTUG00000030907) #16	cyb5r3 (ENSSTUG00000030947)	ENSSTUG00000031897	ENSSTUG00000032479	syt10 (ENSSTUG00000032485)	tnnt2c (ENSSTUG00000032501)	ENSSTUG00000032519	rps16 (ENSSTUG00000032534)	myf6 (ENSSTUG00000032558) #21	myf5 (ENSSTUG00000032573) #22	lin7a (ENSSTUG00000032580) #23	ACSS3 (ENSSTUG00000032599) #24	ppfia2 (ENSSTUG00000032738) #25	llph (ENSSTUG00000035187)	hcls1 (ENSSTUG00000035213)	ENSSTUG00000035760	guca1a (ENSSTUG00000035796)	orc5 (ENSSTUG00000035808)	lhfpl3 (ENSSTUG00000035854)	ENSSTUG00000035865	ENSSTUG00000035873	ndufb2 (ENSSTUG00000035879)	ENSSTUG00000035894	ergic2 (ENSSTUG00000036014)	si:dkey-97m3.1 (ENSSTUG00000036097)
Atlantic salmon	MODERN SPECIES	26	ENSSSAG00000048969	ENSSSAG00000049032 #18	ENSSSAG00000059264	ENSSSAG00000108147	ENSSSAG00000099338 #17	ENSSSAG00000092375 #16	ENSSSAG00000120466	ENSSSAG00000049921	ENSSSAG00000050368	ENSSSAG00000059783	ENSSSAG00000059802	ENSSSAG00000090411	ENSSSAG00000059832	ENSSSAG00000109892	myf6 (ENSSSAG00000059887) #21	myf5 (ENSSSAG00000006004) #22	lin7a (ENSSSAG00000086615) #23	ACSS3 (ENSSSAG00000060026) #24	ppfia2 (ENSSSAG00000060373) #25	llph (ENSSSAG00000064235)	hcls1 (ENSSSAG00000005879)	ENSSSAG00000064357	guca1a (ENSSSAG00000085222)	orc5 (ENSSSAG00000064371)	lhfpl3 (ENSSSAG00000082371)	ENSSSAG00000064417	ENSSSAG00000069201	ndufb2 (ENSSSAG00000116958)	ENSSSAG00000096353	ENSSSAG00000002755	ENSSSAG00000002786
Huchen	MODERN SPECIES	843							syt1a (ENSHHUG00000044047) #16	cyb5r3 (ENSHHUG00000044032)	ENSHHUG00000043992	ENSHHUG00000043988	syt10 (ENSHHUG00000043941)	tnnt2c (ENSHHUG00000043922)	ENSHHUG00000043915	rps16 (ENSHHUG00000043904)	myf6 (ENSHHUG00000043876) #21	myf5 (ENSHHUG00000043862) #22	lin7a (ENSHHUG00000043859) #23	ACSS3 (ENSHHUG00000043852) #24
Salmoninae	ANCESTRAL SPECIES	90	ENSGT00940000154649.A.r.b.b.a.b	ENSGT00400000022326.b.a.a.a	ENSGT00390000018272.j.b	ENSGT01100000263556.a.a.q.d.r	ENSGT00940000156120.a.g #18	ENSGT00940000164178.h.a.a.b	ENSGT00390000000406.i.b #17	ENSGT00940000155394.i.a.f #16	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.i	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a.f #22	ENSGT00950000182959.a.a.e #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479.c #24	ENSGT00940000157479.d #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344.d	ENSGT00940000158997.e.b	ENSGT00730000111007.a.a.l	ENSGT00940000165344.c	ENSGT00940000158997.f	ENSGT00730000111007.a.a.k.b	ENSGT00940000164333.e	ENSGT00390000009380.e.a	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862
Huchen	MODERN SPECIES	1610									syt1a (ENSHHUG00000041492) #16	cyb5r3 (ENSHHUG00000041465)	ENSHHUG00000041391	syt10 (ENSHHUG00000041360)	tnnt2c (ENSHHUG00000041347)	rps16 (ENSHHUG00000041325)	myf6 (ENSHHUG00000041254) #21	myf5 (ENSHHUG00000041246) #22
Salmoninae_a	ANCESTRAL SPECIES	167			ENSGT00940000154649.A.r.b.b.a.a	ENSGT00400000022326.b.a.a.b	ENSGT00530000063817.b.b	ENSGT00940000156120.a.h #18	ENSGT00940000164178.h.a.a.a	ENSGT00390000000406.i.a #17	ENSGT00940000155394.i.a.f #16	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a.f #22	ENSGT00940000153222.a.a.cb #23	ENSGT00940000157479.c #24
Oncorhynchus	ANCESTRAL SPECIES	22	ENSGT00940000167339	ENSGT01100000263556.a.a.q.d.r.a.b.d	ENSGT01100000263556.a.a.q.d.r.a.a	ENSGT01100000263556.a.a.q.d.r.a.b.c.a	ENSGT00530000063817.b.b	ENSGT00940000156120.a.h #18	ENSGT00940000164178.h.a.a.a	ENSGT00390000000406.i.a #17	ENSGT00940000155394.i.a.f #16	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a.c #21	ENSGT00950000182959.a.a.f #22	ENSGT00940000153222.a.a.cb #23	ENSGT00940000157479.c #24	ENSGT01050000244900.a.a.a.a.b.bb.i.a #25	ENSGT00940000165344.d.b	ENSGT00940000158997.e.b.a	ENSGT00730000111007.a.a.l.b	ENSGT00940000164333.f	ENSGT00390000009380.e.b	ENSGT00990000203541.a.a.a.a.a.k	ENSGT00940000157862.v	ENSGT00390000004044.h	ENSGT00940000158039.h.u	ENSGT00530000063113.A.q.h	ENSGT00390000006367.c.w.b	ENSGT00940000155057.vb.a.b
Oncorhynchus_a	ANCESTRAL SPECIES	31	ENSGT00940000167339	ENSGT01100000263556.a.a.q.d.r.a.b.d	ENSGT01100000263556.a.a.q.d.r.a.a	ENSGT01100000263556.a.a.q.d.r.a.b.c.a	ENSGT00530000063817.b.b	ENSGT00940000156120.a.h #18	ENSGT00940000164178.h.a.a.a	ENSGT00390000000406.i.a #17	ENSGT00940000155394.i.a.f #16	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a.c #21	ENSGT00950000182959.a.a.f #22	ENSGT00940000153222.a.a.cb #23	ENSGT00940000157479.c #24	ENSGT01050000244900.a.a.a.a.b.bb.i.a #25	ENSGT00940000165344.d.b	ENSGT00940000158997.e.a	ENSGT00940000158997.e.b.a	ENSGT00730000111007.a.a.l.b	ENSGT00940000164333.f	ENSGT00390000009380.e.b	ENSGT00990000203541.a.a.a.a.a.k	ENSGT00940000157862.v	ENSGT00390000004044.h	ENSGT00940000158039.h.u	ENSGT00530000063113.A.q.g.d	ENSGT00390000006367.c.w.b
Coho salmon	MODERN SPECIES	10	ENSOKIG00005044503	ENSOKIG00005044496	ENSOKIG00005044470	MTERF2 (ENSOKIG00005044462)	ENSOKIG00005044459	PPP1R12A (ENSOKIG00005044359) #18	ENSOKIG00005044330	pawr (ENSOKIG00005044327) #17	SYT1 (ENSOKIG00005044230) #16	CYB5R3 (ENSOKIG00005043270)	ENSOKIG00005042681	syt10 (ENSOKIG00005042620)	tnnt2c (ENSOKIG00005042597)	rps16 (ENSOKIG00005042520)	myf6 (ENSOKIG00005042479) #21	myf5 (ENSOKIG00005042418) #22	lin7a (ENSOKIG00005042387) #23	ACSS3 (ENSOKIG00005042154) #24	ppfia2 (ENSOKIG00005038115) #25	llph (ENSOKIG00005037949)	hcls1 (ENSOKIG00005037631)	ENSOKIG00005037557	guca1a (ENSOKIG00005037538)	orc5 (ENSOKIG00005037458)	lhfpl3 (ENSOKIG00005037430)	ENSOKIG00005037359	ndufb2 (ENSOKIG00005037334)	KDM7A (ENSOKIG00005037241)	ERGIC2 (ENSOKIG00005037145)	ENSOKIG00005037135	ENSOKIG00005037128
Chinook salmon	MODERN SPECIES	8	ENSOTSG00005010516	ENSOTSG00005010515	ENSOTSG00005010517	ENSOTSG00005010518	MTERF2 (ENSOTSG00005010519)	ppp1r12a (ENSOTSG00005010523) #18	ENSOTSG00005010529	pawr (ENSOTSG00005010530) #17	syt1a (ENSOTSG00005010532) #16	cyb5r3 (ENSOTSG00005010535)	ENSOTSG00005011764	syt10 (ENSOTSG00005018655)	tnnt2c (ENSOTSG00005018663)	rps16 (ENSOTSG00005018664)	myf6 (ENSOTSG00005018667) #21	myf5 (ENSOTSG00005018671) #22	lin7a (ENSOTSG00005018677) #23	ACSS3 (ENSOTSG00005018688) #24	ppfia2 (ENSOTSG00005020005) #25	ENSOTSG00005020012 #25	llph (ENSOTSG00005020013)	ENSOTSG00005020014	hcls1 (ENSOTSG00005020015)	ENSOTSG00005020017	guca1a (ENSOTSG00005034149)	orc5 (ENSOTSG00005034150)	lhfpl3 (ENSOTSG00005034151)	ENSOTSG00005034153	ndufb2 (ENSOTSG00005034155)	KDM7A (ENSOTSG00005034158)	ergic2 (ENSOTSG00005034161)
Rainbow trout	MODERN SPECIES	6	ENSOMYG00000006374	ENSOMYG00000006902 #18	ENSOMYG00000073880	ENSOMYG00000007180	ENSOMYG00000007233 #17	ENSOMYG00000007440 #16	ENSOMYG00000053625	ENSOMYG00000008300	ENSOMYG00000009103	ENSOMYG00000063310	ENSOMYG00000068663	ENSOMYG00000009238	ENSOMYG00000009249	ENSOMYG00000009357	myf6 (ENSOMYG00000009391) #21	myf5 (ENSOMYG00000009433) #22	lin7a (ENSOMYG00000009534) #23	ACSS3 (ENSOMYG00000009811) #24	ppfia2 (ENSOMYG00000010771) #25	llph (ENSOMYG00000012619)	hcls1 (ENSOMYG00000012684)	ENSOMYG00000012933	guca1a (ENSOMYG00000012949)	orc5 (ENSOMYG00000012964)	lhfpl3 (ENSOMYG00000012982)	ENSOMYG00000012992	ndufb2 (ENSOMYG00000013001)	ENSOMYG00000013028	ENSOMYG00000013055	ENSOMYG00000013061	ENSOMYG00000013071
Salmo	ANCESTRAL SPECIES	81			ENSGT01100000263556.a.a.q.d.r.a.a	ENSGT01100000263556.a.a.q.d.r.a.b.a	ENSGT00530000063817.b.b	ENSGT00940000156120.a.h #18	ENSGT00940000164178.h.a.a.a	ENSGT00390000000406.i.a #17	ENSGT00940000155394.i.a.f.a #16	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.a	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a.f #21	ENSGT00950000182959.a.a.f #22	ENSGT00940000153222.a.a.cb #23	ENSGT00940000157479.c #24	ENSGT01050000244900.a.a.a.a.b.bb.g #25	ENSGT00940000165344.d	ENSGT00940000158997.e.a.a	ENSGT00940000158997.e.a.b	ENSGT00730000111007.a.a.k.a	ENSGT00940000164333.f	ENSGT00390000009380.e.b	ENSGT00990000203541.a.a.a.a.a.i	ENSGT00940000157862.s.a	ENSGT00390000004044.g	ENSGT00940000158039.h.s	ENSGT00530000063113.A.q.h	ENSGT00390000006367.c.w.a.a
River trout	MODERN SPECIES	34	kitlgb (ENSSTUG00000027812)	ENSSTUG00000027803	ENSSTUG00000027792	ENSSTUG00000027774	ENSSTUG00000027757	ppp1r12a (ENSSTUG00000027550) #18	ENSSTUG00000027503	pawr (ENSSTUG00000027495) #17	syt1a (ENSSTUG00000027446) #16	cyb5r3 (ENSSTUG00000027246)	ENSSTUG00000026446	syt10 (ENSSTUG00000026383)	tnnt2c (ENSSTUG00000026330)	rps16 (ENSSTUG00000026299)	myf6 (ENSSTUG00000026265) #21	myf5 (ENSSTUG00000026178) #22	lin7a (ENSSTUG00000026114) #23	ENSSTUG00000026102	ACSS3 (ENSSTUG00000025813) #24	ppfia2 (ENSSTUG00000024089) #25	llph (ENSSTUG00000024017)	hcls1 (ENSSTUG00000023940)	ENSSTUG00000023891	guca1a (ENSSTUG00000023885)	orc5 (ENSSTUG00000023660)	lhfpl3 (ENSSTUG00000023639)	ENSSTUG00000023522	ndufb2 (ENSSTUG00000023507)	KDM7A (ENSSTUG00000023394)	ENSSTUG00000023386	ENSSTUG00000023379
Atlantic salmon	MODERN SPECIES	8	ENSSSAG00000059129	ENSSSAG00000059156	ENSSSAG00000059181	ENSSSAG00000059204 #18	ENSSSAG00000049822	ENSSSAG00000111955 #17	ENSSSAG00000059333 #16	ENSSSAG00000059420	ENSSSAG00000059732	ENSSSAG00000083937	ENSSSAG00000095543 #23	ENSSSAG00000113707	ENSSSAG00000089629	ENSSSAG00000066580	myf6 (ENSSSAG00000066608) #21	myf5 (ENSSSAG00000059922) #22	acss3 (ENSSSAG00000006095) #24	ENSSSAG00000092189	ppfia2 (ENSSSAG00000006415) #25	ENSSSAG00000006772	llph (ENSSSAG00000006778)	hcls1 (ENSSSAG00000064251)	ENSSSAG00000006792	guca1a (ENSSSAG00000121021)	orc5 (ENSSSAG00000006811)	lhfpl3 (ENSSSAG00000064408)	ENSSSAG00000002335	ENSSSAG00000006913	NDUB2 (ENSSSAG00000006908)	ENSSSAG00000006955	ENSSSAG00000007177
Northern pike	MODERN SPECIES	22	ENSELUG00000030654	ENSELUG00000028612	ENSELUG00000024788	ENSELUG00000028990	ENSELUG00000031374	kitlgb (ENSELUG00000002894)	ENSELUG00000002871	ppp1r12a (ENSELUG00000002794) #18	pawr (ENSELUG00000002637) #17	syt1a (ENSELUG00000002624) #16	cyb5r3 (ENSELUG00000001118)	ENSELUG00000002578	syt10 (ENSELUG00000002545)	tnnt2c (ENSELUG00000002535)	rps16 (ENSELUG00000002505)	myf5 (ENSELUG00000002500) #22	lin7a (ENSELUG00000002488) #23	ACSS3 (ENSELUG00000002474) #24	ppfia2 (ENSELUG00000002421) #25	llph (ENSELUG00000026094)	hcls1 (ENSELUG00000002347)	ENSELUG00000002315	guca1a (ENSELUG00000002288)	orc5 (ENSELUG00000002281)	lhfpl3 (ENSELUG00000002269)	ENSELUG00000028784	ENSELUG00000026586	ENSELUG00000002258	ndufb2 (ENSELUG00000002225)	KDM7A (ENSELUG00000002230)	ergic2 (ENSELUG00000002211)
Elephant shark	MODERN SPECIES	1598															myf6 (ENSCMIG00000003176) #21	myf5 (ENSCMIG00000003173) #22	ENSCMIG00000003169	lin7a (ENSCMIG00000003143) #23	ACSS3 (ENSCMIG00000003106) #24	ENSCMIG00000002009 #25	ENSCMIG00000001602 #27	METTL25 (ENSCMIG00000001596) #28	tmtc2a (ENSCMIG00000001512) #29	SLC6A15 (ENSCMIG00000001437) #30	ENSCMIG00000001422	ENSCMIG00000001392	alx1 (ENSCMIG00000001372) #31	MGAT4C (ENSCMIG00000001367) #35	kcnc2 (ENSCMIG00000001363)	TRHDE (ENSCMIG00000001317)	tph2 (ENSCMIG00000001174)
Gnathostomata	DUPLICATION
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00950000182959.a.b.a ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000182959.a.b.a ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00950000182959.a.b.a ##22
Reedfish	MODERN SPECIES		pacsin2 (ENSECRG00000009143)	ttll1 (ENSECRG00000009159)	mcat (ENSECRG00000009176)	ENSECRG00000009184	nav3 (ENSECRG00000009243) #14	syt1a (ENSECRG00000009372) #16	pawr (ENSECRG00000009402) #17	ENSECRG00000009415	ENSECRG00000009427 #18	ENSECRG00000009442	rps16 (ENSECRG00000009451)	OTOGL (ENSECRG00000009486) #19	ENSECRG00000009546	PTPRQ (ENSECRG00000009623) #20	myf6 (ENSECRG00000009908) #21	ENSECRG00000009918 ##22	lin7a (ENSECRG00000009937) #23	ACSS3 (ENSECRG00000009948) #24	ppfia2 (ENSECRG00000010095) #25	ccdc59 (ENSECRG00000010497) #27	mettl25 (ENSECRG00000010503) #28	ENSECRG00000010511	tmtc2a (ENSECRG00000010528) #29	SLC6A15 (ENSECRG00000010556) #30	alx1 (ENSECRG00000010569) #31	RASSF9 (ENSECRG00000010575) #33	NTS (ENSECRG00000010584) #34	ENSECRG00000010592	zgc:103499 (ENSECRG00000010598) #37	ENSECRG00000010606	ENSECRG00000010614
Neopterygii	ANCESTRAL SPECIES																	ENSGT00950000182959.a.b.a ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00950000182959.a.b.a ##22
Osteoglossiformes	ANCESTRAL SPECIES																	ENSGT00950000182959.a.b.a ##22
Asian bonytongue	MODERN SPECIES	20	st8sia1 (ENSSFOG00015031686)	c2cd5 (ENSSFOG00015007251)	tnni1c (ENSSFOG00015007034)	ENSSFOG00015006988	fkbp4 (ENSSFOG00015006963)	wash1 (ENSSFOG00015006911)	IQSEC3 (ENSSFOG00015006849)	ENSSFOG00015006795	SLC6A12 (ENSSFOG00015006733)	PARP11 (ENSSFOG00015006711)	PARP11 (ENSSFOG00015030308)	TMTC2 (ENSSFOG00015006658) #29	ppfia2 (ENSSFOG00015006565) #25	ENSSFOG00015006552	ENSSFOG00015006506	ENSSFOG00015006456 ##22	lin7a (ENSSFOG00015006439) #23	rps16 (ENSSFOG00015027301)	ppp1r12a (ENSSFOG00015006318) #18	pawr (ENSSFOG00015029824) #17	syt1a (ENSSFOG00015029529) #16	nav3 (ENSSFOG00015005938) #14	e2f7 (ENSSFOG00015005873) #12	csrp2 (ENSSFOG00015026621) #10	zdhhc17 (ENSSFOG00015026847) #9	OSBPL8 (ENSSFOG00015005711) #8	BBS10 (ENSSFOG00015005695) #7	nap1l1 (ENSSFOG00015005659)	phlda1 (ENSSFOG00015005642)	GLIPR1 (ENSSFOG00015005634)	kcnc2 (ENSSFOG00015005624)
Spotted gar	MODERN SPECIES	674	ENSLOCG00000016266	nap1l1 (ENSLOCG00000016269)	BBS10 (ENSLOCG00000016274) #7	OSBPL8 (ENSLOCG00000016275) #8	zdhhc17 (ENSLOCG00000016277) #9	csrp2 (ENSLOCG00000016278) #10	e2f7 (ENSLOCG00000016279) #12	nav3 (ENSLOCG00000016281) #14	SYT1 (ENSLOCG00000016283) #16	pawr (ENSLOCG00000016287) #17	pawr (ENSLOCG00000017914) #17	ppp1r12a (ENSLOCG00000016288) #18	rps16 (ENSLOCG00000016289)	OTOGL (ENSLOCG00000016290) #19	PTPRQ (ENSLOCG00000016300) #20	ENSLOCG00000016302 ##22	lin7a (ENSLOCG00000016303) #23	ACSS3 (ENSLOCG00000016308) #24	ppfia2 (ENSLOCG00000016312) #25	ENSLOCG00000016320	ccdc59 (ENSLOCG00000016324) #27	mettl25 (ENSLOCG00000016327) #28	tmtc2a (ENSLOCG00000016332) #29	SLC6A15 (ENSLOCG00000016334) #30	ENSLOCG00000016339	ENSLOCG00000016340	alx1 (ENSLOCG00000016343) #31	RASSF9 (ENSLOCG00000016344) #33	NTS (ENSLOCG00000016345) #34	MGAT4C (ENSLOCG00000016347) #35	ENSLOCG00000016349
Gnathostomata	DUPLICATION
Gnathostomata	ANCESTRAL SPECIES	283																ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31
Elephant shark	MODERN SPECIES	1598																myf6 (ENSCMIG00000003176) #21	myf5 (ENSCMIG00000003173) #22	ENSCMIG00000003169	lin7a (ENSCMIG00000003143) #23	ACSS3 (ENSCMIG00000003106) #24	ENSCMIG00000002009 #25	ENSCMIG00000001602 #27	METTL25 (ENSCMIG00000001596) #28	tmtc2a (ENSCMIG00000001512) #29	SLC6A15 (ENSCMIG00000001437) #30	ENSCMIG00000001422	ENSCMIG00000001392	alx1 (ENSCMIG00000001372) #31	MGAT4C (ENSCMIG00000001367) #35	kcnc2 (ENSCMIG00000001363)	TRHDE (ENSCMIG00000001317)
Euteleostomi	ANCESTRAL SPECIES	16	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00660000096975	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000167105	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Actinopterygii	ANCESTRAL SPECIES	17	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00660000096975	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000167105	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Neopterygii	ANCESTRAL SPECIES	21	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00960000187527	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00660000096975	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000167105	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Osteoglossocephalai	ANCESTRAL SPECIES	48	ENSGT00390000018775	ENSGT00940000163632	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.k.b	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25
Clupeocephala	ANCESTRAL SPECIES	188	ENSGT00390000018775	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00510000047886.b	ENSGT00940000171263	ENSGT00940000158014 #14	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.k.a	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h
Euteleosteomorpha	ANCESTRAL SPECIES	30						ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00990000204681	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00530000063113.A.q
Protacanthopterygii	ANCESTRAL SPECIES	23	ENSGT00390000003290	ENSGT00940000156334.a.b	ENSGT00390000005848	ENSGT00940000157275.a	ENSGT01030000234982	ENSGT00940000154649.A.r	ENSGT00400000022326.b.a.a	ENSGT00940000156120.a #18	ENSGT00390000000406 #17	ENSGT00940000155394.i.a #16	ENSGT00940000153962.b	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000158899	ENSGT00940000154709.a.a	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00530000063113.A.q	ENSGT00390000006367.c.w
Salmoninae	ANCESTRAL SPECIES	90	ENSGT00940000154649.A.r.b.b.b.a	ENSGT00940000154649.A.r.b.b.a.b	ENSGT00400000022326.b.a.a.a	ENSGT00390000018272.j.b	ENSGT01100000263556.a.a.q.d.r	ENSGT00940000156120.a.g #18	ENSGT00940000164178.h.a.a.b	ENSGT00390000000406.i.b #17	ENSGT00940000155394.i.a.f #16	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.i	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a.f #22	ENSGT00950000182959.a.a.e #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479.c #24	ENSGT00940000157479.d #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344.d	ENSGT00940000158997.e.b	ENSGT00730000111007.a.a.l	ENSGT00940000165344.c	ENSGT00940000158997.f	ENSGT00730000111007.a.a.k.b	ENSGT00940000164333.e	ENSGT00390000009380.e.a	ENSGT00990000203541.a.a.a.a.a
Huchen	DUPLICATION
Huchen	MODERN SPECIES	843								syt1a (ENSHHUG00000044047) #16	cyb5r3 (ENSHHUG00000044032)	ENSHHUG00000043992	ENSHHUG00000043988	syt10 (ENSHHUG00000043941)	tnnt2c (ENSHHUG00000043922)	ENSHHUG00000043915	rps16 (ENSHHUG00000043904)	myf6 (ENSHHUG00000043876) #21	myf5 (ENSHHUG00000043862) #22	lin7a (ENSHHUG00000043859) #23	ACSS3 (ENSHHUG00000043852) #24
Huchen	MODERN SPECIES	1610										syt1a (ENSHHUG00000041492) #16	cyb5r3 (ENSHHUG00000041465)	ENSHHUG00000041391	syt10 (ENSHHUG00000041360)	tnnt2c (ENSHHUG00000041347)	rps16 (ENSHHUG00000041325)	myf6 (ENSHHUG00000041254) #21	myf5 (ENSHHUG00000041246) #22
Salmoninae_a	ANCESTRAL SPECIES	167				ENSGT00940000154649.A.r.b.b.a.a	ENSGT00400000022326.b.a.a.b	ENSGT00530000063817.b.b	ENSGT00940000156120.a.h #18	ENSGT00940000164178.h.a.a.a	ENSGT00390000000406.i.a #17	ENSGT00940000155394.i.a.f #16	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a.f #22	ENSGT00940000153222.a.a.cb #23	ENSGT00940000157479.c #24
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	22	ENSGT01100000263549.k.b	ENSGT00940000167339	ENSGT01100000263556.a.a.q.d.r.a.b.d	ENSGT01100000263556.a.a.q.d.r.a.a	ENSGT01100000263556.a.a.q.d.r.a.b.c.a	ENSGT00530000063817.b.b	ENSGT00940000156120.a.h #18	ENSGT00940000164178.h.a.a.a	ENSGT00390000000406.i.a #17	ENSGT00940000155394.i.a.f #16	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a.c #21	ENSGT00950000182959.a.a.f #22	ENSGT00940000153222.a.a.cb #23	ENSGT00940000157479.c #24	ENSGT01050000244900.a.a.a.a.b.bb.i.a #25	ENSGT00940000165344.d.b	ENSGT00940000158997.e.b.a	ENSGT00730000111007.a.a.l.b	ENSGT00940000164333.f	ENSGT00390000009380.e.b	ENSGT00990000203541.a.a.a.a.a.k	ENSGT00940000157862.v	ENSGT00390000004044.h	ENSGT00940000158039.h.u	ENSGT00530000063113.A.q.h	ENSGT00390000006367.c.w.b
Rainbow trout	MODERN SPECIES	6	ENSOMYG00000006344	ENSOMYG00000006374	ENSOMYG00000006902 #18	ENSOMYG00000073880	ENSOMYG00000007180	ENSOMYG00000007233 #17	ENSOMYG00000007440 #16	ENSOMYG00000053625	ENSOMYG00000008300	ENSOMYG00000009103	ENSOMYG00000063310	ENSOMYG00000068663	ENSOMYG00000009238	ENSOMYG00000009249	ENSOMYG00000009357	myf6 (ENSOMYG00000009391) #21	myf5 (ENSOMYG00000009433) #22	lin7a (ENSOMYG00000009534) #23	ACSS3 (ENSOMYG00000009811) #24	ppfia2 (ENSOMYG00000010771) #25	llph (ENSOMYG00000012619)	hcls1 (ENSOMYG00000012684)	ENSOMYG00000012933	guca1a (ENSOMYG00000012949)	orc5 (ENSOMYG00000012964)	lhfpl3 (ENSOMYG00000012982)	ENSOMYG00000012992	ndufb2 (ENSOMYG00000013001)	ENSOMYG00000013028	ENSOMYG00000013055	ENSOMYG00000013061
Oncorhynchus_a	ANCESTRAL SPECIES	31	ENSGT01100000263549.k.b	ENSGT00940000167339	ENSGT01100000263556.a.a.q.d.r.a.b.d	ENSGT01100000263556.a.a.q.d.r.a.a	ENSGT01100000263556.a.a.q.d.r.a.b.c.a	ENSGT00530000063817.b.b	ENSGT00940000156120.a.h #18	ENSGT00940000164178.h.a.a.a	ENSGT00390000000406.i.a #17	ENSGT00940000155394.i.a.f #16	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a.c #21	ENSGT00950000182959.a.a.f #22	ENSGT00940000153222.a.a.cb #23	ENSGT00940000157479.c #24	ENSGT01050000244900.a.a.a.a.b.bb.i.a #25	ENSGT00940000165344.d.b	ENSGT00940000158997.e.a	ENSGT00940000158997.e.b.a	ENSGT00730000111007.a.a.l.b	ENSGT00940000164333.f	ENSGT00390000009380.e.b	ENSGT00990000203541.a.a.a.a.a.k	ENSGT00940000157862.v	ENSGT00390000004044.h	ENSGT00940000158039.h.u	ENSGT00530000063113.A.q.g.d
Coho salmon	MODERN SPECIES	10	kitlgb (ENSOKIG00005044521)	ENSOKIG00005044503	ENSOKIG00005044496	ENSOKIG00005044470	MTERF2 (ENSOKIG00005044462)	ENSOKIG00005044459	PPP1R12A (ENSOKIG00005044359) #18	ENSOKIG00005044330	pawr (ENSOKIG00005044327) #17	SYT1 (ENSOKIG00005044230) #16	CYB5R3 (ENSOKIG00005043270)	ENSOKIG00005042681	syt10 (ENSOKIG00005042620)	tnnt2c (ENSOKIG00005042597)	rps16 (ENSOKIG00005042520)	myf6 (ENSOKIG00005042479) #21	myf5 (ENSOKIG00005042418) #22	lin7a (ENSOKIG00005042387) #23	ACSS3 (ENSOKIG00005042154) #24	ppfia2 (ENSOKIG00005038115) #25	llph (ENSOKIG00005037949)	hcls1 (ENSOKIG00005037631)	ENSOKIG00005037557	guca1a (ENSOKIG00005037538)	orc5 (ENSOKIG00005037458)	lhfpl3 (ENSOKIG00005037430)	ENSOKIG00005037359	ndufb2 (ENSOKIG00005037334)	KDM7A (ENSOKIG00005037241)	ERGIC2 (ENSOKIG00005037145)	ENSOKIG00005037135
Chinook salmon	MODERN SPECIES	8	kitlgb (ENSOTSG00005010514)	ENSOTSG00005010516	ENSOTSG00005010515	ENSOTSG00005010517	ENSOTSG00005010518	MTERF2 (ENSOTSG00005010519)	ppp1r12a (ENSOTSG00005010523) #18	ENSOTSG00005010529	pawr (ENSOTSG00005010530) #17	syt1a (ENSOTSG00005010532) #16	cyb5r3 (ENSOTSG00005010535)	ENSOTSG00005011764	syt10 (ENSOTSG00005018655)	tnnt2c (ENSOTSG00005018663)	rps16 (ENSOTSG00005018664)	myf6 (ENSOTSG00005018667) #21	myf5 (ENSOTSG00005018671) #22	lin7a (ENSOTSG00005018677) #23	ACSS3 (ENSOTSG00005018688) #24	ppfia2 (ENSOTSG00005020005) #25	ENSOTSG00005020012 #25	llph (ENSOTSG00005020013)	ENSOTSG00005020014	hcls1 (ENSOTSG00005020015)	ENSOTSG00005020017	guca1a (ENSOTSG00005034149)	orc5 (ENSOTSG00005034150)	lhfpl3 (ENSOTSG00005034151)	ENSOTSG00005034153	ndufb2 (ENSOTSG00005034155)	KDM7A (ENSOTSG00005034158)
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT01090000260033.b.g.b.a.b.a.b.b.b.b.b	ENSGT01030000234589.h.f.b.b.a.a.a.b.b.b.a	ENSGT00940000175977	ENSGT01100000263549.k.a	ENSGT01100000263556.a.a.q.d.r.a.b.c.b	ENSGT00940000156120.a.g #18	ENSGT00940000164178.h.a.a.b	ENSGT00390000000406.i.b #17	ENSGT00940000153962.b.e.a	ENSGT01050000244951.a.b.a.b.b.g	ENSGT01040000240385.A.b.b.a.b.a.a.a.b.b	ENSGT00940000158899.i.a	ENSGT00940000154709.a.a.f	ENSGT00940000164822.eb	ENSGT00390000013067.l.i	ENSGT00950000182959.a.b.b.a.d #21	ENSGT00950000182959.a.a.e #22	ENSGT00940000153222.a.a.bb #23	ENSGT01050000244900.a.a.a.a.b.bb.i.b #25	ENSGT00940000165344.d.a	ENSGT00940000158997.e.b.b	ENSGT00730000111007.a.a.l.a	ENSGT00940000164333.e	ENSGT00390000009380.e.a	ENSGT00990000203541.a.a.a.a.a.l	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.b	ENSGT00940000157862.u.a	ENSGT00390000004044.g	ENSGT00940000158039.h.v	ENSGT00530000063113.A.q.g	ENSGT00390000006367.c.w.a
Rainbow trout	MODERN SPECIES	13	ENSOMYG00000015906	ENSOMYG00000015887	ENSOMYG00000015882	ENSOMYG00000015860	ENSOMYG00000015664 #18	ENSOMYG00000015530	ENSOMYG00000015520 #17	ENSOMYG00000015469 #16	ENSOMYG00000015363	ENSOMYG00000015082	ENSOMYG00000014997	ENSOMYG00000014985	ENSOMYG00000014972	ENSOMYG00000014963	ENSOMYG00000014948	myf6 (ENSOMYG00000014934) #21	ENSOMYG00000074848	Myf5 (ENSOMYG00000014917) #22	lin7a (ENSOMYG00000014904) #23	ENSOMYG00000050420	ENSOMYG00000004734	ppfia2 (ENSOMYG00000014291) #25	llph (ENSOMYG00000013636)	hcls1 (ENSOMYG00000013975)	guca1a (ENSOMYG00000013888)	ENSOMYG00000013697	orc5 (ENSOMYG00000077068)	lhfpl3 (ENSOMYG00000013630)	ENSOMYG00000074943	ENSOMYG00000013624	ENSOMYG00000013553
Oncorhynchus_a	ANCESTRAL SPECIES	64	ENSGT01090000260033.b.g.b.b.b.a.b.a.d	ENSGT01090000260033.b.g.b.a.b.a.b.b.b.b.b	ENSGT01030000234589.h.f.b.b.a.a.a.b.b.b.a	ENSGT00940000175977	ENSGT01100000263549.k.a	ENSGT00940000156120.a.g #18	ENSGT00940000164178.h.a.a.b	ENSGT00390000000406.i.b #17	ENSGT00940000153962.b.e.a	ENSGT01050000244951.a.b.a.b.b.g	ENSGT01040000240385.A.b.b.a.b.a.a.a.b.b	ENSGT00940000158899.i.a	ENSGT00940000154709.a.a.f	ENSGT00940000164822.eb	ENSGT00390000013067.l.i	ENSGT00950000182959.a.b.b.a.d #21	ENSGT00950000182959.a.a.e #22	ENSGT00940000153222.a.a.bb #23	ENSGT01050000244900.a.a.a.a.b.bb.i.b #25	ENSGT00940000165344.d.a	ENSGT00940000158997.e.b.b	ENSGT00730000111007.a.a.l.a	ENSGT00940000164333.e	ENSGT00390000009380.e.a	ENSGT00990000203541.a.a.a.a.a.l	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.b	ENSGT00940000157862.u.a	ENSGT00390000004044.g	ENSGT00940000158039.h.v	ENSGT00530000063113.A.q.g.c	ENSGT00390000006367.c.w.a
Coho salmon	MODERN SPECIES	29	ENSOKIG00005012764	ENSOKIG00005012743	ENSOKIG00005012738	ppp1r12a (ENSOKIG00005012576) #18	ENSOKIG00005012494	PAWR (ENSOKIG00005012477) #17	syt1a (ENSOKIG00005012455) #16	cyb5r3 (ENSOKIG00005011252)	ENSOKIG00005011075	ENSOKIG00005011037	ENSOKIG00005011026	ENSOKIG00005011022	ENSOKIG00005010999	ENSOKIG00005010986	RPS16 (ENSOKIG00005010963)	myf6 (ENSOKIG00005010942) #21	myf5 (ENSOKIG00005010902) #22	lin7a (ENSOKIG00005010877) #23	ppfia2 (ENSOKIG00005007307) #25	llph (ENSOKIG00005007027)	hcls1 (ENSOKIG00005006199)	ENSOKIG00005006075	guca1a (ENSOKIG00005006054)	orc5 (ENSOKIG00005005916)	LHFPL3 (ENSOKIG00005005900)	ENSOKIG00005005890	ENSOKIG00005005876	ndufb2 (ENSOKIG00005005858)	ENSOKIG00005005773	ERGIC2 (ENSOKIG00005005657)	si:dkey-97m3.1 (ENSOKIG00005005611)
Chinook salmon	MODERN SPECIES	6	ENSOTSG00005006375	ENSOTSG00005006373	ENSOTSG00005006371	ENSOTSG00005006370	ENSOTSG00005006367	zgc:113263 (ENSOTSG00005006366)	ENSOTSG00005006364	cyb5r3 (ENSOTSG00005004729)	ENSOTSG00005004585	ENSOTSG00005004581	ENSOTSG00005004580	syt10 (ENSOTSG00005004578)	tnnt2c (ENSOTSG00005004568)	ENSOTSG00005004562	rps16 (ENSOTSG00005004561)	myf6 (ENSOTSG00005004560) #21	myf5 (ENSOTSG00005004458) #22	lin7a (ENSOTSG00005004455) #23	ENSOTSG00005004450	guca1a (ENSOTSG00005004448)	orc5 (ENSOTSG00005004419)	lhfpl3 (ENSOTSG00005004416)	ENSOTSG00005004414	ENSOTSG00005004413	ndufb2 (ENSOTSG00005004411)	KDM7A (ENSOTSG00005004384)	ergic2 (ENSOTSG00005004353)	si:dkey-97m3.1 (ENSOTSG00005004350)	ENSOTSG00005004348	ENSOTSG00005004346	ENSOTSG00005004345
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	25	ENSGT00390000018272.j.a	ENSGT01100000263549.k	ENSGT00940000167339.r	ENSGT01100000263556.a.a.q.d.r.a.b.b	ENSGT00940000156120.a.g #18	ENSGT00940000164178.h.a.a.b	ENSGT00390000000406.i.b #17	ENSGT00940000155394.i.a.f.b #16	ENSGT00940000153962.b.e.a	ENSGT01050000244951.a.b.a.b.b.g	ENSGT01040000240385.A.b.b.a.b.a.a.a.b.b	ENSGT00940000158899.i.b	ENSGT00940000154709.a.a.f	ENSGT00940000164822.eb.a	ENSGT00390000013067.l.i	ENSGT00950000182959.a.b.b.a.e #21	ENSGT00950000182959.a.a.e #22	ENSGT00940000153222.a.a.bb #23	ENSGT00940000157479.d #24	ENSGT01050000244900.a.a.a.a.b.bb.h #25	ENSGT00940000165344.c	ENSGT00940000158997.e.b	ENSGT00730000111007.a.a.k.b	ENSGT00940000164333.e	ENSGT00390000009380.e.a	ENSGT00990000203541.a.a.a.a.a.j	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.b	ENSGT00940000157862.s.b	ENSGT00940000158039.h.t	ENSGT01040000240385.A.a.b.b.f	ENSGT00940000157862.t
Atlantic salmon	MODERN SPECIES	26	ENSSSAG00000101043	ENSSSAG00000048969	ENSSSAG00000049032 #18	ENSSSAG00000059264	ENSSSAG00000108147	ENSSSAG00000099338 #17	ENSSSAG00000092375 #16	ENSSSAG00000120466	ENSSSAG00000049921	ENSSSAG00000050368	ENSSSAG00000059783	ENSSSAG00000059802	ENSSSAG00000090411	ENSSSAG00000059832	ENSSSAG00000109892	myf6 (ENSSSAG00000059887) #21	myf5 (ENSSSAG00000006004) #22	lin7a (ENSSSAG00000086615) #23	ACSS3 (ENSSSAG00000060026) #24	ppfia2 (ENSSSAG00000060373) #25	llph (ENSSSAG00000064235)	hcls1 (ENSSSAG00000005879)	ENSSSAG00000064357	guca1a (ENSSSAG00000085222)	orc5 (ENSSSAG00000064371)	lhfpl3 (ENSSSAG00000082371)	ENSSSAG00000064417	ENSSSAG00000069201	ndufb2 (ENSSSAG00000116958)	ENSSSAG00000096353	ENSSSAG00000002755
River trout	MODERN SPECIES	38	ENSSTUG00000030595	ENSSTUG00000030624	ENSSTUG00000030613	ENSSTUG00000030667	ppp1r12a (ENSSTUG00000030696) #18	ENSSTUG00000030863	pawr (ENSSTUG00000030899) #17	syt1a (ENSSTUG00000030907) #16	cyb5r3 (ENSSTUG00000030947)	ENSSTUG00000031897	ENSSTUG00000032479	syt10 (ENSSTUG00000032485)	tnnt2c (ENSSTUG00000032501)	ENSSTUG00000032519	rps16 (ENSSTUG00000032534)	myf6 (ENSSTUG00000032558) #21	myf5 (ENSSTUG00000032573) #22	lin7a (ENSSTUG00000032580) #23	ACSS3 (ENSSTUG00000032599) #24	ppfia2 (ENSSTUG00000032738) #25	llph (ENSSTUG00000035187)	hcls1 (ENSSTUG00000035213)	ENSSTUG00000035760	guca1a (ENSSTUG00000035796)	orc5 (ENSSTUG00000035808)	lhfpl3 (ENSSTUG00000035854)	ENSSTUG00000035865	ENSSTUG00000035873	ndufb2 (ENSSTUG00000035879)	ENSSTUG00000035894	ergic2 (ENSSTUG00000036014)
Salmo	ANCESTRAL SPECIES	81				ENSGT01100000263556.a.a.q.d.r.a.a	ENSGT01100000263556.a.a.q.d.r.a.b.a	ENSGT00530000063817.b.b	ENSGT00940000156120.a.h #18	ENSGT00940000164178.h.a.a.a	ENSGT00390000000406.i.a #17	ENSGT00940000155394.i.a.f.a #16	ENSGT00940000153962.b.e.b	ENSGT01050000244951.a.b.a.b.b.h	ENSGT00940000158899.i.a	ENSGT00940000154709.a.a.e	ENSGT00390000013067.l.j	ENSGT00950000182959.a.b.b.a.f #21	ENSGT00950000182959.a.a.f #22	ENSGT00940000153222.a.a.cb #23	ENSGT00940000157479.c #24	ENSGT01050000244900.a.a.a.a.b.bb.g #25	ENSGT00940000165344.d	ENSGT00940000158997.e.a.a	ENSGT00940000158997.e.a.b	ENSGT00730000111007.a.a.k.a	ENSGT00940000164333.f	ENSGT00390000009380.e.b	ENSGT00990000203541.a.a.a.a.a.i	ENSGT00940000157862.s.a	ENSGT00390000004044.g	ENSGT00940000158039.h.s	ENSGT00530000063113.A.q.h
Atlantic salmon	MODERN SPECIES	8	ENSSSAG00000059114	ENSSSAG00000059129	ENSSSAG00000059156	ENSSSAG00000059181	ENSSSAG00000059204 #18	ENSSSAG00000049822	ENSSSAG00000111955 #17	ENSSSAG00000059333 #16	ENSSSAG00000059420	ENSSSAG00000059732	ENSSSAG00000083937	ENSSSAG00000095543 #23	ENSSSAG00000113707	ENSSSAG00000089629	ENSSSAG00000066580	myf6 (ENSSSAG00000066608) #21	myf5 (ENSSSAG00000059922) #22	acss3 (ENSSSAG00000006095) #24	ENSSSAG00000092189	ppfia2 (ENSSSAG00000006415) #25	ENSSSAG00000006772	llph (ENSSSAG00000006778)	hcls1 (ENSSSAG00000064251)	ENSSSAG00000006792	guca1a (ENSSSAG00000121021)	orc5 (ENSSSAG00000006811)	lhfpl3 (ENSSSAG00000064408)	ENSSSAG00000002335	ENSSSAG00000006913	NDUB2 (ENSSSAG00000006908)	ENSSSAG00000006955
River trout	MODERN SPECIES	34	ENSSTUG00000027916	kitlgb (ENSSTUG00000027812)	ENSSTUG00000027803	ENSSTUG00000027792	ENSSTUG00000027774	ENSSTUG00000027757	ppp1r12a (ENSSTUG00000027550) #18	ENSSTUG00000027503	pawr (ENSSTUG00000027495) #17	syt1a (ENSSTUG00000027446) #16	cyb5r3 (ENSSTUG00000027246)	ENSSTUG00000026446	syt10 (ENSSTUG00000026383)	tnnt2c (ENSSTUG00000026330)	rps16 (ENSSTUG00000026299)	myf6 (ENSSTUG00000026265) #21	myf5 (ENSSTUG00000026178) #22	lin7a (ENSSTUG00000026114) #23	ENSSTUG00000026102	ACSS3 (ENSSTUG00000025813) #24	ppfia2 (ENSSTUG00000024089) #25	llph (ENSSTUG00000024017)	hcls1 (ENSSTUG00000023940)	ENSSTUG00000023891	guca1a (ENSSTUG00000023885)	orc5 (ENSSTUG00000023660)	lhfpl3 (ENSSTUG00000023639)	ENSSTUG00000023522	ndufb2 (ENSSTUG00000023507)	KDM7A (ENSSTUG00000023394)	ENSSTUG00000023386
Acanthomorphata	ANCESTRAL SPECIES	47	ENSGT00940000163513	ENSGT00950000183052.b.c.b.a	ENSGT00940000158003	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Euacanthomorphacea	ANCESTRAL SPECIES	18	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.a.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Pinecone sodierfish	MODERN SPECIES	15	igf1 (ENSMMDG00005018826)	ENSMMDG00005018912	btbd11a (ENSMMDG00005018917)	cry1a (ENSMMDG00005018951)	MTERF2 (ENSMMDG00005020073)	tnnt2c (ENSMMDG00005020074)	syt10 (ENSMMDG00005020079)	ENSMMDG00005020084	ENSMMDG00005020134	cyb5r3 (ENSMMDG00005020515)	syt1a (ENSMMDG00005020740) #16	pawr (ENSMMDG00005020744) #17	ppp1r12a (ENSMMDG00005020751) #18	rps16 (ENSMMDG00005020764)	ENSMMDG00005020765	myf6 (ENSMMDG00005020767) #21	myf5 (ENSMMDG00005020770) #22	lin7a (ENSMMDG00005020771) #23	ACSS3 (ENSMMDG00005020784) #24	ppfia2 (ENSMMDG00005021115) #25	ENSMMDG00005023019	foxm1 (ENSMMDG00005023025)	rhno1 (ENSMMDG00005023026)	TULP3 (ENSMMDG00005023029)	ENSMMDG00005023031	ptn (ENSMMDG00005023033)	chrm2a (ENSMMDG00005023036)	mtpn (ENSMMDG00005023039)	ENSMMDG00005023040	SEMA3C (ENSMMDG00005023044)	cd36 (ENSMMDG00005023059)
Percomorphaceae	ANCESTRAL SPECIES	19	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Tiger tail seahorse	MODERN SPECIES	433	fgf23 (ENSHCOG00000017488)	ccnd2b (ENSHCOG00000017500)	llph (ENSHCOG00000017511)	pex26 (ENSHCOG00000017529)	hcls1 (ENSHCOG00000017538)	ENSHCOG00000017542	guca1a (ENSHCOG00000000480)	orc5 (ENSHCOG00000017584)	lhfpl3 (ENSHCOG00000017594)	ENSHCOG00000017619	cyb5r3 (ENSHCOG00000017648)	syt1a (ENSHCOG00000017684) #16	pawr (ENSHCOG00000017688) #17	ppp1r12a (ENSHCOG00000017732) #18	rps16 (ENSHCOG00000017762)	myf6 (ENSHCOG00000017768) #21	myf5 (ENSHCOG00000017783) #22	lin7a (ENSHCOG00000017797) #23	ACSS3 (ENSHCOG00000017835) #24	ppfia2 (ENSHCOG00000017898) #25	ENSHCOG00000017941	foxm1 (ENSHCOG00000017947)	ENSHCOG00000017961	TULP3 (ENSHCOG00000017974)	ENSHCOG00000017982	ENSHCOG00000018040	syt10 (ENSHCOG00000018057)	tnnt2c (ENSHCOG00000018063)	cry1a (ENSHCOG00000018111)	btbd11a (ENSHCOG00000018163)	ENSHCOG00000018199
Percomorphaceae_B	ANCESTRAL SPECIES	21	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Ovalentaria	ANCESTRAL SPECIES	22	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Atherinomorphae	ANCESTRAL SPECIES	21	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379
Cyprinodontiformes	ANCESTRAL SPECIES	19	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379
Aplocheiloidei	ANCESTRAL SPECIES	14	ENSGT00390000010777	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.a.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379
Mangrove rivulus	MODERN SPECIES	19	ENSKMAG00000012992	igf1 (ENSKMAG00000012960)	ENSKMAG00000012934	ENSKMAG00000012909	btbd11a (ENSKMAG00000012822)	cry1a (ENSKMAG00000012604)	tnnt2c (ENSKMAG00000012574)	syt10 (ENSKMAG00000012546)	ENSKMAG00000012499	cyb5r3 (ENSKMAG00000012463)	syt1a (ENSKMAG00000012419) #16	ENSKMAG00000012380	pawr (ENSKMAG00000012360) #17	ppp1r12a (ENSKMAG00000012279) #18	rps16 (ENSKMAG00000012230)	myf6 (ENSKMAG00000012210) #21	myf5 (ENSKMAG00000012199) #22	lin7a (ENSKMAG00000012178) #23	ACSS3 (ENSKMAG00000012129) #24	ppfia2 (ENSKMAG00000011901) #25	ENSKMAG00000011752	foxm1 (ENSKMAG00000011726)	rhno1 (ENSKMAG00000011710)	TULP3 (ENSKMAG00000011684)	ENSKMAG00000011655	ENSKMAG00000011642	ptn (ENSKMAG00000011624)	chrm2a (ENSKMAG00000011608)	ENSKMAG00000011593	ENSKMAG00000011574	SEMA3C (ENSKMAG00000011493)
Turquoise killifish	MODERN SPECIES	1610	btbd11a (ENSNFUG00015022372)	cry1a (ENSNFUG00015018834)	tnnt2c (ENSNFUG00015018733)	SYT10 (ENSNFUG00015018728)	ENSNFUG00015018727	ENSNFUG00015018708	CYB5R3 (ENSNFUG00015018146)	SYT1A (ENSNFUG00015018114) #16	ENSNFUG00015018105	PAWR (ENSNFUG00015018098) #17	ppp1r12a (ENSNFUG00015018078) #18	ENSNFUG00015018069	RPS16 (ENSNFUG00015018063)	ENSNFUG00015018060	ENSNFUG00015018056	myf6 (ENSNFUG00015018050) #21	myf5 (ENSNFUG00015018047) #22	lin7a (ENSNFUG00015018040) #23	ENSNFUG00015018037	ACSS3 (ENSNFUG00015017298) #24	ENSNFUG00015017269	ppfia2 (ENSNFUG00015013697) #25	ENSNFUG00015013563	CU571169.1 (ENSNFUG00015012519)	foxm1 (ENSNFUG00015012456)	CU571169.5 (ENSNFUG00015012448)	TULP3 (ENSNFUG00015012432)	TRIM35 (ENSNFUG00015012422)	ptn (ENSNFUG00015012413)	CHRM2A (ENSNFUG00015012408)	ENSNFUG00015012405
Cyprinodontoidei	ANCESTRAL SPECIES	20	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00840000130048.b	ENSGT00940000162287.B.a.c	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379
Poeciliinae	ANCESTRAL SPECIES	19	ENSGT00840000130048.b	ENSGT00940000162287.B.a.c	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379
Platyfish	MODERN SPECIES	8	parpbp (ENSXMAG00000017346)	ENSXMAG00000017362	igf1 (ENSXMAG00000028624)	ENSXMAG00000026515	ENSXMAG00000024762	btbd11a (ENSXMAG00000025507)	cyb5r3 (ENSXMAG00000017411)	ENSXMAG00000017426	syt10 (ENSXMAG00000017449)	ENSXMAG00000019615	cry1a (ENSXMAG00000017466)	syt1a (ENSXMAG00000017468) #16	pawr (ENSXMAG00000026362) #17	ppp1r12a (ENSXMAG00000017534) #18	rps16 (ENSXMAG00000030077)	myf6 (ENSXMAG00000017492) #21	myf5 (ENSXMAG00000017496) #22	lin7a (ENSXMAG00000026246) #23	ACSS3 (ENSXMAG00000017548) #24	ENSXMAG00000024730	ppfia2 (ENSXMAG00000027756) #25	ENSXMAG00000017594	foxm1 (ENSXMAG00000029688)	ENSXMAG00000024470	TULP3 (ENSXMAG00000017658)	ENSXMAG00000022584	ENSXMAG00000026341	ptn (ENSXMAG00000029793)	chrm2a (ENSXMAG00000017689)	ENSXMAG00000029537	mtpn (ENSXMAG00000004863)
Poecilia	ANCESTRAL SPECIES	29	ENSGT00840000130048.b	ENSGT00940000162287.B.a.c	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Guppy	MODERN SPECIES	454	ntn4 (ENSPREG00000022641)	snrpf (ENSPREG00000022635)	amdhd1 (ENSPREG00000022628)	tspan9b (ENSPREG00000022623)	ENSPREG00000022605	ENSPREG00000022592	cry1a (ENSPREG00000022582)	ENSPREG00000022576	syt10 (ENSPREG00000022565)	ENSPREG00000022557	cyb5r3 (ENSPREG00000022548)	syt1a (ENSPREG00000022536) #16	pawr (ENSPREG00000022522) #17	ppp1r12a (ENSPREG00000022493) #18	rps16 (ENSPREG00000022479)	myf6 (ENSPREG00000022475) #21	myf5 (ENSPREG00000022457) #22	lin7a (ENSPREG00000022447) #23	ACSS3 (ENSPREG00000022433) #24	ppfia2 (ENSPREG00000022413) #25	ENSPREG00000022397	foxm1 (ENSPREG00000022385)	rhno1 (ENSPREG00000022379)	TULP3 (ENSPREG00000022359)	ENSPREG00000022348	ENSPREG00000022336	ptn (ENSPREG00000022330)	chrm2a (ENSPREG00000022325)	ENSPREG00000022320	ENSPREG00000022313	SEMA3C (ENSPREG00000022300)
NAME_6	ANCESTRAL SPECIES	55	ENSGT00940000168896	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT00940000155368.q	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379
Amazon molly	MODERN SPECIES	320	parpbp (ENSPFOG00000017952)	ENSPFOG00000017948	igf1 (ENSPFOG00000017930)	ENSPFOG00000017913	btbd11a (ENSPFOG00000017882)	ENSPFOG00000017877	cry1a (ENSPFOG00000017846)	tnnt2c (ENSPFOG00000020848)	syt10 (ENSPFOG00000017820)	ENSPFOG00000017778	cyb5r3 (ENSPFOG00000017742)	syt1a (ENSPFOG00000017713) #16	pawr (ENSPFOG00000017689) #17	ppp1r12a (ENSPFOG00000017528) #18	rps16 (ENSPFOG00000017508)	myf6 (ENSPFOG00000017498) #21	myf5 (ENSPFOG00000017488) #22	lin7a (ENSPFOG00000017480) #23	ACSS3 (ENSPFOG00000017417) #24	ppfia2 (ENSPFOG00000017112) #25	ENSPFOG00000022280 #25	ENSPFOG00000016986	foxm1 (ENSPFOG00000016962)	rhno1 (ENSPFOG00000016961)	TULP3 (ENSPFOG00000016911)	ENSPFOG00000016905	ENSPFOG00000016883	ptn (ENSPFOG00000016870)	chrm2a (ENSPFOG00000016867)	ENSPFOG00000016863	ENSPFOG00000016861
Sailfin molly	MODERN SPECIES	9											cyb5r3 (ENSPLAG00000011214)	syt1a (ENSPLAG00000011246) #16	pawr (ENSPLAG00000011257) #17	ppp1r12a (ENSPLAG00000011399) #18	rps16 (ENSPLAG00000011432)	myf6 (ENSPLAG00000011443) #21	myf5 (ENSPLAG00000011536) #22	lin7a (ENSPLAG00000011553) #23	ACSS3 (ENSPLAG00000011623) #24	ppfia2 (ENSPLAG00000011834) #25	ENSPLAG00000011929	foxm1 (ENSPLAG00000011940)	rhno1 (ENSPLAG00000011951)	TULP3 (ENSPLAG00000011999)	ENSPLAG00000012034	ENSPLAG00000012066	ptn (ENSPLAG00000012078)	chrm2a (ENSPLAG00000012100)	ENSPLAG00000012114	ENSPLAG00000012137
NAME_4	ANCESTRAL SPECIES	16	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000162287.B.a.c	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a
Mummichog	MODERN SPECIES	2417										ENSFHEG00000021284	cyb5r3 (ENSFHEG00000021318)	syt1a (ENSFHEG00000021375) #16	pawr (ENSFHEG00000021387) #17	ppp1r12a (ENSFHEG00000021437) #18	rps16 (ENSFHEG00000021489)	myf6 (ENSFHEG00000021493) #21	myf5 (ENSFHEG00000021507) #22	lin7a (ENSFHEG00000021555) #23	ACSS3 (ENSFHEG00000021602) #24	ppfia2 (ENSFHEG00000021683) #25	ENSFHEG00000021695	foxm1 (ENSFHEG00000021721)	rhno1 (ENSFHEG00000021747)	ENSFHEG00000021764	ENSFHEG00000021805
Sheepshead minnow	MODERN SPECIES	119	parpbp (ENSCVAG00000015932)	ENSCVAG00000016009	igf1 (ENSCVAG00000016044)	ENSCVAG00000016092	ENSCVAG00000016098	btbd11a (ENSCVAG00000016113)	cry1a (ENSCVAG00000016128)	ENSCVAG00000016131	syt10 (ENSCVAG00000016202)	ENSCVAG00000016230	cyb5r3 (ENSCVAG00000016259)	syt1a (ENSCVAG00000016341) #16	pawr (ENSCVAG00000016350) #17	ppp1r12a (ENSCVAG00000016377) #18	rps16 (ENSCVAG00000016397)	myf6 (ENSCVAG00000016409) #21	myf5 (ENSCVAG00000016428) #22	lin7a (ENSCVAG00000016461) #23	ACSS3 (ENSCVAG00000016481) #24	ppfia2 (ENSCVAG00000016666) #25	ENSCVAG00000016685	foxm1 (ENSCVAG00000016692)	rhno1 (ENSCVAG00000016698)	ENSCVAG00000016726	ENSCVAG00000016742	ptn (ENSCVAG00000016747)	chrm2a (ENSCVAG00000016771)
Oryzias	ANCESTRAL SPECIES	20	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g.c	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a.d #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Oryzias_b	ANCESTRAL SPECIES	19	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g.c	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a.d #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Indian medaka	MODERN SPECIES	2	parpbp (ENSOMEG00000003398)	ENSOMEG00000003411	igf1 (ENSOMEG00000003424)	ENSOMEG00000003451	btbd11a (ENSOMEG00000003530)	cry1a (ENSOMEG00000003568)	ENSOMEG00000003581	tnnt2c (ENSOMEG00000003593)	syt10 (ENSOMEG00000003610)	ENSOMEG00000003669	cyb5r3 (ENSOMEG00000003698)	syt1a (ENSOMEG00000003714) #16	pawr (ENSOMEG00000003730) #17	ppp1r12a (ENSOMEG00000003801) #18	rps16 (ENSOMEG00000003840)	myf6 (ENSOMEG00000003855) #21	myf5 (ENSOMEG00000003862) #22	lin7a (ENSOMEG00000003884) #23	ACSS3 (ENSOMEG00000003964) #24	ppfia2 (ENSOMEG00000004094) #25	ENSOMEG00000004125	foxm1 (ENSOMEG00000004150)	ENSOMEG00000004155	TULP3 (ENSOMEG00000004185)	ENSOMEG00000004208	ptn (ENSOMEG00000000096)	chrm2a (ENSOMEG00000000098)	ENSOMEG00000004244	ENSOMEG00000004249	ENSOMEG00000004254	SEMA3C (ENSOMEG00000004303)
Javanese ricefish	MODERN SPECIES	15	parpbp (ENSOJAG00000023537)	ENSOJAG00000023539	igf1 (ENSOJAG00000023545)	ENSOJAG00000023553	btbd11a (ENSOJAG00000023574)	ENSOJAG00000023593	ENSOJAG00000023595	cry1a (ENSOJAG00000023629)	MTERF2 (ENSOJAG00000023694)	syt10 (ENSOJAG00000023697)	ENSOJAG00000023700	syt1a (ENSOJAG00000023710) #16	pawr (ENSOJAG00000023718) #17	ppp1r12a (ENSOJAG00000023721) #18	rps16 (ENSOJAG00000023733)	myf6 (ENSOJAG00000023735) #21	myf5 (ENSOJAG00000023736) #22	lin7a (ENSOJAG00000023737) #23	ACSS3 (ENSOJAG00000023742) #24	ppfia2 (ENSOJAG00000023762) #25	foxm1 (ENSOJAG00000023805)	ENSOJAG00000023806	ENSOJAG00000023808	ENSOJAG00000023813	ptn (ENSOJAG00000023820)	chrm2a (ENSOJAG00000023822)	ENSOJAG00000023823	ENSOJAG00000023825	ENSOJAG00000014770	nup50 (ENSOJAG00000014777)	kiaa0930 (ENSOJAG00000014799)
Oryzias_a	ANCESTRAL SPECIES	15	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g.c	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a.d #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.k.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00940000168487	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	51	parpbp (ENSOSIG00000008240)	ENSOSIG00000008239	ENSOSIG00000008238	ENSOSIG00000008237	igf1 (ENSOSIG00000008154)	btbd11a (ENSOSIG00000008093)	cry1a (ENSOSIG00000007925)	MTERF2 (ENSOSIG00000007922)	tnnt2c (ENSOSIG00000007920)	syt10 (ENSOSIG00000007919)	ENSOSIG00000007916	ENSOSIG00000007911	syt1a (ENSOSIG00000007909) #16	pawr (ENSOSIG00000007906) #17	ppp1r12a (ENSOSIG00000007904) #18	myf6 (ENSOSIG00000007902) #21	myf5 (ENSOSIG00000007901) #22	lin7a (ENSOSIG00000007898) #23	ACSS3 (ENSOSIG00000007896) #24	RPS16 (ENSOSIG00000007851)	ppfia2 (ENSOSIG00000005522) #25	ENSOSIG00000005445	foxm1 (ENSOSIG00000005386)	ENSOSIG00000005383	ptn (ENSOSIG00000005378)	chrm2a (ENSOSIG00000005373)	ENSOSIG00000005369	SEMA3C (ENSOSIG00000005314)	cd36 (ENSOSIG00000005295)	ENSOSIG00000005228	ENSOSIG00000005174
Chinese medaka	MODERN SPECIES	52													pawr (ENSOSIG00000003677) #17	ppp1r12a (ENSOSIG00000003628) #18	rps16 (ENSOSIG00000003413)	myf6 (ENSOSIG00000003401) #21	myf5 (ENSOSIG00000003391) #22	lin7a (ENSOSIG00000003379) #23	ACSS3 (ENSOSIG00000022239) #24	ppfia2 (ENSOSIG00000022032) #25	ENSOSIG00000021947	ENSOSIG00000021938	ptn (ENSOSIG00000021933)	chrm2a (ENSOSIG00000021926)	ENSOSIG00000021920	ENSOSIG00000021442	cd36 (ENSOSIG00000021399)	ENSOSIG00000021381	ENSOSIG00000021252	si:dkey-97m3.1 (ENSOSIG00000021193)	ergic2 (ENSOSIG00000021149)
Japanese Medaka HdrR	MODERN SPECIES	15	ENSORLG00000016450	igf1 (ENSORLG00000016443)	ENSORLG00000027418	cox6b2 (ENSORLG00000016425)	btbd11a (ENSORLG00000016422)	ENSORLG00000016390	cry1a (ENSORLG00000016410)	tnnt2c (ENSORLG00000016386)	syt10 (ENSORLG00000016381)	ENSORLG00000016372	cyb5r3 (ENSORLG00000018656)	syt1a (ENSORLG00000016339) #16	pawr (ENSORLG00000026995) #17	ppp1r12a (ENSORLG00000016314) #18	rps16 (ENSORLG00000016271)	myf6 (ENSORLG00000016261) #21	myf5 (ENSORLG00000016257) #22	lin7a (ENSORLG00000030538) #23	ACSS3 (ENSORLG00000016249) #24	ppfia2 (ENSORLG00000016236) #25	ENSORLG00000016174	foxm1 (ENSORLG00000016140)	rhno1 (ENSORLG00000026209)	TULP3 (ENSORLG00000016129)	ENSORLG00000016118	ENSORLG00000024838	ptn (ENSORLG00000016099)	chrm2a (ENSORLG00000030214)	ENSORLG00000023855	ENSORLG00000029110	SEMA3C (ENSORLG00000016082)
Ovalentaria_B	ANCESTRAL SPECIES	23	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Pomacentridae	ANCESTRAL SPECIES	59	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00530000063817.b.b	ENSGT00940000155455.g	ENSGT00940000156419.b	ENSGT00940000154709.a.a	ENSGT00940000158899.bb.b	ENSGT00940000158899.cb	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Pomacentridae_A	ANCESTRAL SPECIES	58	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00530000063817.b.b	ENSGT00940000155455.g	ENSGT00940000156419.b	ENSGT00940000154709.a.a	ENSGT00940000158899.cb	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Amphiprion	ANCESTRAL SPECIES	19	ENSGT00390000006088	ENSGT00940000168896	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00530000063817.b.b	ENSGT00940000155455.g	ENSGT00940000156419.b	ENSGT00940000154709.a.a	ENSGT00940000158899.cb	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Orange clownfish	MODERN SPECIES	13	parpbp (ENSAPEG00000021705)	ENSAPEG00000021659	igf1 (ENSAPEG00000021610)	ENSAPEG00000021575	ENSAPEG00000021556	cry1a (ENSAPEG00000021519)	btbd11a (ENSAPEG00000021482)	tnnt2c (ENSAPEG00000021437)	syt10 (ENSAPEG00000021420)	ENSAPEG00000021411	cyb5r3 (ENSAPEG00000021367)	syt1a (ENSAPEG00000021322) #16	pawr (ENSAPEG00000021309) #17	ppp1r12a (ENSAPEG00000021244) #18	rps16 (ENSAPEG00000021214)	myf6 (ENSAPEG00000021158) #21	myf5 (ENSAPEG00000021137) #22	lin7a (ENSAPEG00000021115) #23	ACSS3 (ENSAPEG00000021054) #24	ppfia2 (ENSAPEG00000020985) #25	ENSAPEG00000020865	foxm1 (ENSAPEG00000020793)	rhno1 (ENSAPEG00000020771)	TULP3 (ENSAPEG00000020752)	ENSAPEG00000020727	ENSAPEG00000020705	ptn (ENSAPEG00000020677)	chrm2a (ENSAPEG00000020661)	mtpn (ENSAPEG00000020630)	ENSAPEG00000020602	SEMA3C (ENSAPEG00000020577)
Spiny chromis	MODERN SPECIES	1975															rps16 (ENSAPOG00000018869)	myf6 (ENSAPOG00000018965) #21	myf5 (ENSAPOG00000018995) #22	lin7a (ENSAPOG00000019025) #23	ACSS3 (ENSAPOG00000019111) #24
Bicolor damselfish	MODERN SPECIES	310												syt1a (ENSSPAG00000007874) #16	pawr (ENSSPAG00000007892) #17	ppp1r12a (ENSSPAG00000007917) #18	rps16 (ENSSPAG00000008089)	myf6 (ENSSPAG00000008107) #21	myf5 (ENSSPAG00000008117) #22	lin7a (ENSSPAG00000008137) #23	ACSS3 (ENSSPAG00000008160) #24	ppfia2 (ENSSPAG00000008238) #25	ENSSPAG00000008316	foxm1 (ENSSPAG00000008351)	rhno1 (ENSSPAG00000008397)	TULP3 (ENSSPAG00000008407)	ENSSPAG00000008458	ENSSPAG00000008474	ptn (ENSSPAG00000008499)	chrm2a (ENSSPAG00000008507)
Cichlidae	ANCESTRAL SPECIES	24	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00940000172707.b	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093.i	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Pseudocrenilabrinae	ANCESTRAL SPECIES	21	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00940000172707.b	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093.i	ENSGT00940000158804.m	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	10	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00940000172707.b	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093.i	ENSGT00940000158804.n	ENSGT00940000158804.m	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379
Haplochromini	ANCESTRAL SPECIES	9	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093.i	ENSGT00940000158804.n.b	ENSGT00940000158804.m	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379
Burton s mouthbrooder	MODERN SPECIES	326										ENSHBUG00000012255	cyb5r3 (ENSHBUG00000012236)	syt1a (ENSHBUG00000012192) #16	pawr (ENSHBUG00000012169) #17	ENSHBUG00000012146	rps16 (ENSHBUG00000011868)	myf6 (ENSHBUG00000011840) #21	myf5 (ENSHBUG00000011829) #22	lin7a (ENSHBUG00000000328) #23	ACSS3 (ENSHBUG00000011792) #24	ppfia2 (ENSHBUG00000011753) #25	ENSHBUG00000011518	foxm1 (ENSHBUG00000011509)	rhno1 (ENSHBUG00000011503)	foxm1 (ENSHBUG00000011493)	TULP3 (ENSHBUG00000011480)	ENSHBUG00000011412	ENSHBUG00000011400	ptn (ENSHBUG00000011360)	chrm2a (ENSHBUG00000011351)	mtpn (ENSHBUG00000011342)	ENSHBUG00000011331
Haplochromini_A	ANCESTRAL SPECIES	9	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093.i	ENSGT00940000158804.n.b	ENSGT00940000158804.m	ENSGT00730000112347	ENSGT00940000158155	ENSGT00940000155368.ab.a	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b
P. nyererei	MODERN SPECIES	399										ENSPNYG00000018682	cyb5r3 (ENSPNYG00000018648)	syt1a (ENSPNYG00000018615) #16	pawr (ENSPNYG00000018605) #17	ppp1r12a (ENSPNYG00000018399) #18	rps16 (ENSPNYG00000018328)	myf6 (ENSPNYG00000018314) #21	myf5 (ENSPNYG00000018301) #22	lin7a (ENSPNYG00000018284) #23	ACSS3 (ENSPNYG00000018233) #24	ppfia2 (ENSPNYG00000018167) #25	ENSPNYG00000018091	foxm1 (ENSPNYG00000018069)	rhno1 (ENSPNYG00000018048)	TULP3 (ENSPNYG00000018015)	ENSPNYG00000018003	ENSPNYG00000017991	ptn (ENSPNYG00000017983)	chrm2a (ENSPNYG00000017969)	mtpn (ENSPNYG00000017967)	ENSPNYG00000017958	SEMA3C (ENSPNYG00000017904)
Haplochromini_B	ANCESTRAL SPECIES	11	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000158804.n.a	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093.i	ENSGT00940000158804.n.b	ENSGT00940000158804.m	ENSGT00730000112347	ENSGT00940000158155	ENSGT00940000155368.ab.a	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b
Zebra mbuna	MODERN SPECIES	1099	parpbp (ENSMZEG00005001242)	pmch (ENSMZEG00005001251)	igf1 (ENSMZEG00005001284)	ENSMZEG00005001313	btbd11a (ENSMZEG00005001355)	cry1a (ENSMZEG00005001451)	MTERF2 (ENSMZEG00005001466)	syt10 (ENSMZEG00005001603)	ENSMZEG00005001628	cyb5r3 (ENSMZEG00005001636)	syt1a (ENSMZEG00005001660) #16	pawr (ENSMZEG00005001704) #17	ppp1r12a (ENSMZEG00005001744) #18	foxm1 (ENSMZEG00005001943)	rps16 (ENSMZEG00005001975)	myf6 (ENSMZEG00005001995) #21	myf5 (ENSMZEG00005002005) #22	lin7a (ENSMZEG00005002013) #23	ACSS3 (ENSMZEG00005002036) #24	ppfia2 (ENSMZEG00005002099) #25	ENSMZEG00005002179	foxm1 (ENSMZEG00005002229)	foxm1 (ENSMZEG00005002268)	rhno1 (ENSMZEG00005002308)	TULP3 (ENSMZEG00005002320)	ENSMZEG00005002354	ENSMZEG00005002378	opn5 (ENSMZEG00005002393)	ENSMZEG00005002407	cd2ap (ENSMZEG00005002420)	tnfrsf21 (ENSMZEG00005002452)
Eastern happy	MODERN SPECIES	8	parpbp (ENSACLG00000016788)	pmch (ENSACLG00000016802)	igf1 (ENSACLG00000016815)	ENSACLG00000016841	btbd11a (ENSACLG00000016936)	cry1a (ENSACLG00000017110)	MTERF2 (ENSACLG00000017181)	syt10 (ENSACLG00000017353)	ENSACLG00000017416	cyb5r3 (ENSACLG00000017472)	syt1a (ENSACLG00000017513) #16	pawr (ENSACLG00000017548) #17	ppp1r12a (ENSACLG00000017614) #18	foxm1 (ENSACLG00000017856)	rps16 (ENSACLG00000017963)	myf6 (ENSACLG00000017983) #21	myf5 (ENSACLG00000017991) #22	lin7a (ENSACLG00000018011) #23	ACSS3 (ENSACLG00000018059) #24	ppfia2 (ENSACLG00000018429) #25	ENSACLG00000018723	foxm1 (ENSACLG00000018814)	foxm1 (ENSACLG00000018922)	rhno1 (ENSACLG00000018940)	TULP3 (ENSACLG00000018961)	ENSACLG00000019033	ENSACLG00000019049	ptn (ENSACLG00000019074)	chrm2a (ENSACLG00000019090)	mtpn (ENSACLG00000019115)	ENSACLG00000019126
Lyretail cichlid	MODERN SPECIES	291	ENSNBRG00000010987	btbd11a (ENSNBRG00000010944)	ENSNBRG00000010937	MTERF2 (ENSNBRG00000010933)	cry1a (ENSNBRG00000010898)	tnnt2c (ENSNBRG00000010879)	syt10 (ENSNBRG00000010856)	ENSNBRG00000010848	ENSNBRG00000010794	cyb5r3 (ENSNBRG00000010756)	syt1a (ENSNBRG00000010739) #16	pawr (ENSNBRG00000010725) #17	ppp1r12a (ENSNBRG00000010670) #18	ENSNBRG00000010659	rps16 (ENSNBRG00000010637)	myf6 (ENSNBRG00000010629) #21	myf5 (ENSNBRG00000010621) #22	lin7a (ENSNBRG00000010602) #23	ENSNBRG00000010588	ACSS3 (ENSNBRG00000010540) #24	ppfia2 (ENSNBRG00000010460) #25	ENSNBRG00000010443	foxm1 (ENSNBRG00000010396)	ENSNBRG00000010385	TULP3 (ENSNBRG00000010353)	ENSNBRG00000010331	ENSNBRG00000010318	ptn (ENSNBRG00000010305)	chrm2a (ENSNBRG00000010300)	mtpn (ENSNBRG00000010292)	ENSNBRG00000010278
Nile tilapia	MODERN SPECIES	8	igf1 (ENSONIG00000017800)	ENSONIG00000017799	btbd11a (ENSONIG00000017796)	cry1a (ENSONIG00000000075)	MTERF2 (ENSONIG00000020695)	tnnt2c (ENSONIG00000020696)	ENSONIG00000000001	syt10 (ENSONIG00000000002)	syt1a (ENSONIG00000000003) #16	pawr (ENSONIG00000028232) #17	ppp1r12a (ENSONIG00000000005) #18	foxm1 (ENSONIG00000027574)	foxm1 (ENSONIG00000000082)	ENSONIG00000031149	rps16 (ENSONIG00000000006)	myf6 (ENSONIG00000000007) #21	myf5 (ENSONIG00000038625) #22	lin7a (ENSONIG00000000078) #23	ACSS3 (ENSONIG00000000079) #24	ppfia2 (ENSONIG00000000080) #25	ENSONIG00000000081	foxm1 (ENSONIG00000042685)	rhno1 (ENSONIG00000000083)	TULP3 (ENSONIG00000000084)	ENSONIG00000030976	ENSONIG00000000085	ptn (ENSONIG00000000086)	chrm2a (ENSONIG00000020697)	ENSONIG00000030324	mtpn (ENSONIG00000041390)	ENSONIG00000000088
Midas cichlid	MODERN SPECIES	1331													pawr (ENSACIG00000013438) #17	ppp1r12a (ENSACIG00000013397) #18	rps16 (ENSACIG00000013386)	myf6 (ENSACIG00000013331) #21	myf5 (ENSACIG00000013314) #22	lin7a (ENSACIG00000013298) #23	ACSS3 (ENSACIG00000013258) #24	ppfia2 (ENSACIG00000013195) #25	ENSACIG00000013105
Percomorphaceae_C	ANCESTRAL SPECIES	22	ENSGT00840000130048.b	ENSGT00940000172707.b	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Percomorphaceae_D	ANCESTRAL SPECIES	22	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Carangaria	ANCESTRAL SPECIES	22	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Pleuronectoidei	ANCESTRAL SPECIES	16	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT00940000155368	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Tongue sole	MODERN SPECIES	18	nrip2 (ENSCSEG00000004633)	klhl42 (ENSCSEG00000004627)	elapor2b (ENSCSEG00000004623)	tspan9b (ENSCSEG00000004608)	amdhd1 (ENSCSEG00000004613)	cry1a (ENSCSEG00000004597)	MTERF2 (ENSCSEG00000004606)	syt10 (ENSCSEG00000004582)	ENSCSEG00000004570	cyb5r3 (ENSCSEG00000004558)	syt1a (ENSCSEG00000004537) #16	pawr (ENSCSEG00000004529) #17	ppp1r12a (ENSCSEG00000004475) #18	rps16 (ENSCSEG00000004454)	rps16 (ENSCSEG00000004450)	myf6 (ENSCSEG00000004440) #21	myf5 (ENSCSEG00000004433) #22	lin7a (ENSCSEG00000004421) #23	ACSS3 (ENSCSEG00000004396) #24	TMEM19 (ENSCSEG00000004390)	kics2 (ENSCSEG00000004388)	srgap1b (ENSCSEG00000004374)	AVPR1A (ENSCSEG00000004367)	acot14 (ENSCSEG00000004355)	ENSCSEG00000004343	ENSCSEG00000004334	cwf19l1 (ENSCSEG00000004325)	dmtf1 (ENSCSEG00000004319)	tmem243b (ENSCSEG00000004311)	meig1 (ENSCSEG00000004307)	dclre1c (ENSCSEG00000004303)
Turbot	MODERN SPECIES	11	parpbp (ENSSMAG00000005145)	pmch (ENSSMAG00000022672)	igf1 (ENSSMAG00000005115)	ENSSMAG00000030625	ENSSMAG00000005081	btbd11a (ENSSMAG00000005012)	ENSSMAG00000004964	ENSSMAG00000005003	tnnt2c (ENSSMAG00000004942)	ENSSMAG00000004931	ENSSMAG00000004880	ENSSMAG00000004819	ENSSMAG00000004787 #16	ENSSMAG00000004775 #17	ENSSMAG00000032576	myf6 (ENSSMAG00000024612) #21	myf5 (ENSSMAG00000004563) #22	ENSSMAG00000004633 #18	lin7a (ENSSMAG00000004519) #23	ACSS3 (ENSSMAG00000004487) #24	ppfia2 (ENSSMAG00000004417) #25	ENSSMAG00000030237	ENSSMAG00000032625	ENSSMAG00000004385	rhno1 (ENSSMAG00000032963)	ENSSMAG00000004338	ENSSMAG00000004364	ENSSMAG00000004315	ptn (ENSSMAG00000004300)	chrm2a (ENSSMAG00000004285)	mtpn (ENSSMAG00000026919)
Carangaria_A	ANCESTRAL SPECIES	21	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Barramundi perch	MODERN SPECIES	34	GCNT4 (ENSLCAG00010004017)	hmgcrb (ENSLCAG00010003972)	CERT1 (ENSLCAG00010003603)	SV2C (ENSLCAG00010003544)	F2RL2 (ENSLCAG00010003542)	f2r2.1 (ENSLCAG00010003537)	f2rl1.1 (ENSLCAG00010003533)	f2rl1.2 (ENSLCAG00010003531)	ch25hl2 (ENSLCAG00010003527)	ENSLCAG00010003294	cyb5r3 (ENSLCAG00010003205)	syt1a (ENSLCAG00010003197) #16	pawr (ENSLCAG00010003184) #17	ppp1r12a (ENSLCAG00010003115) #18	rps16 (ENSLCAG00010003081)	myf6 (ENSLCAG00010003076) #21	myf5 (ENSLCAG00010003070) #22	lin7a (ENSLCAG00010003066) #23	ACSS3 (ENSLCAG00010003060) #24
Seriola	ANCESTRAL SPECIES	9	ENSGT00530000064318	ENSGT00730000111164	ENSGT00390000012080	ENSGT00530000063539.b	ENSGT01020000230394.e.a.a.a.a.b	ENSGT00940000156680.b	ENSGT00990000203615.a.a.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b.c	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Yellowtail amberjack	MODERN SPECIES	2908									ENSSLDG00000019169	cyb5r3 (ENSSLDG00000019154)	syt1a (ENSSLDG00000019130) #16	pawr (ENSSLDG00000019114) #17	ENSSLDG00000019080 #18	ppp1r12a (ENSSLDG00000019041) #18	rps16 (ENSSLDG00000019014)	myf6 (ENSSLDG00000018996) #21	myf5 (ENSSLDG00000018969) #22	lin7a (ENSSLDG00000018950) #23	ACSS3 (ENSSLDG00000018882) #24	ppfia2 (ENSSLDG00000018811) #25	ENSSLDG00000018758	ENSSLDG00000018608	foxm1 (ENSSLDG00000018534)	rhno1 (ENSSLDG00000018518)	TULP3 (ENSSLDG00000018502)	ENSSLDG00000018485	ptn (ENSSLDG00000018471)	chrm2a (ENSSLDG00000018456)	mtpn (ENSSLDG00000018435)	ENSSLDG00000018423	ENSSLDG00000018412
Greater amberjack	MODERN SPECIES	60	ENSSDUG00000017218	UPF2 (ENSSDUG00000017244)	slc35e3 (ENSSDUG00000017364)	nup107 (ENSSDUG00000017402)	mdm2 (ENSSDUG00000017495)	plxnb2a.1 (ENSSDUG00000017517)	abcc9 (ENSSDUG00000017622)	kcnj8 (ENSSDUG00000017965)	syt10 (ENSSDUG00000018002)	ENSSDUG00000018031	cyb5r3 (ENSSDUG00000018106)	syt1a (ENSSDUG00000018131) #16	pawr (ENSSDUG00000018156) #17	ppp1r12a (ENSSDUG00000018184) #18	rps16 (ENSSDUG00000018274)	myf6 (ENSSDUG00000018309) #21	myf5 (ENSSDUG00000018287) #22	lin7a (ENSSDUG00000018320) #23	ACSS3 (ENSSDUG00000018359) #24	ppfia2 (ENSSDUG00000018476) #25	ENSSDUG00000018657	foxm1 (ENSSDUG00000018732)	rhno1 (ENSSDUG00000018757)	TULP3 (ENSSDUG00000018775)	ENSSDUG00000018796	ENSSDUG00000018819	ptn (ENSSDUG00000018862)	ENSSDUG00000018870	chrm2a (ENSSDUG00000018876)	mtpn (ENSSDUG00000018885)	ENSSDUG00000018905
Anabantaria	ANCESTRAL SPECIES	21	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00940000163513	ENSGT00950000183169.A.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Zig-zag eel	MODERN SPECIES	15	parpbp (ENSMAMG00000016003)	pmch (ENSMAMG00000015727)	igf1 (ENSMAMG00000015704)	ENSMAMG00000015670	btbd11a (ENSMAMG00000015616)	ENSMAMG00000015580	tnnt2c (ENSMAMG00000015546)	ENSMAMG00000015509	ENSMAMG00000024270	ENSMAMG00000015433	ENSMAMG00000015393	ENSMAMG00000015373 #16	ENSMAMG00000015337 #17	ppp1r12a (ENSMAMG00000015240) #18	ENSMAMG00000015224	myf6 (ENSMAMG00000015217) #21	myf5 (ENSMAMG00000015202) #22	lin7a (ENSMAMG00000015174) #23	ACSS3 (ENSMAMG00000015114) #24	ppfia2 (ENSMAMG00000014966) #25	ENSMAMG00000014909	ENSMAMG00000014899	rhno1 (ENSMAMG00000014885)	ENSMAMG00000014877	ENSMAMG00000014845	ptn (ENSMAMG00000014825)	chrm2a (ENSMAMG00000025277)	mtpn (ENSMAMG00000014764)	ENSMAMG00000014753	ENSMAMG00000014716	ENSMAMG00000014241
Anabantoidei	ANCESTRAL SPECIES	21	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT00940000163513	ENSGT00950000183169.A.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000157779	ENSGT00940000158580	ENSGT01040000240400.c.a.b.a.a.d.a.b.b	ENSGT00940000155878	ENSGT00940000168658	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT01040000240400.c.a.b.a.a.d.a.b.a	ENSGT00390000017498.f	ENSGT00940000158113	ENSGT00390000007831
Siamese fighting fish	MODERN SPECIES	20	th2 (ENSBSLG00000006132)	nup37 (ENSBSLG00000006190)	parpbp (ENSBSLG00000006209)	pmch (ENSBSLG00000006216)	igf1 (ENSBSLG00000006224)	ENSBSLG00000006232	btbd11a (ENSBSLG00000006250)	cry1a (ENSBSLG00000007173)	syt10 (ENSBSLG00000007302)	ENSBSLG00000007321	cyb5r3 (ENSBSLG00000007400)	syt1a (ENSBSLG00000007799) #16	pawr (ENSBSLG00000007919) #17	ppp1r12a (ENSBSLG00000007997) #18	rps16 (ENSBSLG00000008793)	myf6 (ENSBSLG00000008938) #21	myf5 (ENSBSLG00000008998) #22	LIN7B (ENSBSLG00000009073) ##23	ACSS3 (ENSBSLG00000009122) #24	ppfia2 (ENSBSLG00000009838) #25	dclre1c (ENSBSLG00000010562)	cpm (ENSBSLG00000010758)	ENSBSLG00000010788	TRHDE (ENSBSLG00000010858)	ENSBSLG00000011190	ENSBSLG00000011210	ENSBSLG00000011225	ENSBSLG00000011241	dyrk2 (ENSBSLG00000011249)	ENSBSLG00000011257	ENSBSLG00000011261
Climbing perch	MODERN SPECIES	14	pmch (ENSATEG00000022998)	igf1 (ENSATEG00000023026)	ENSATEG00000023044	ENSATEG00000029039	btbd11a (ENSATEG00000023064)	ENSATEG00000023083	tnnt2c (ENSATEG00000023096)	ENSATEG00000023107	ENSATEG00000026602	ENSATEG00000023121	ENSATEG00000023152	ENSATEG00000023170 #16	ENSATEG00000023210 #17	ENSATEG00000023226 #18	ENSATEG00000023236	myf6 (ENSATEG00000023242) #21	myf5 (ENSATEG00000023249) #22	lin7a (ENSATEG00000023252) #23	ACSS3 (ENSATEG00000023260) #24	ppfia2 (ENSATEG00000023284) #25	ENSATEG00000023298	ENSATEG00000025485	ENSATEG00000023308	ENSATEG00000023314	ENSATEG00000023329	ENSATEG00000023340	ENSATEG00000023343	ENSATEG00000029926	ENSATEG00000028577	ENSATEG00000023359	dyrk2 (ENSATEG00000023365)
Eupercaria	ANCESTRAL SPECIES	21	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000165530.a.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Tetraodontidae	ANCESTRAL SPECIES	17	ENSGT01030000234578.B.a	ENSGT00390000006747	ENSGT00950000183117.a.a	ENSGT00940000158254	ENSGT00940000155067.b.a	ENSGT00940000155067.a	ENSGT00390000002730.e.b	ENSGT00950000183113.b.b.c.b	ENSGT00940000160161.e.a	ENSGT00940000153414.A	ENSGT00940000157821.h.a	ENSGT00940000160821	ENSGT00940000163946.a	ENSGT00940000155180.b.b	ENSGT00940000165907	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479.f #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00390000006367.c	ENSGT00940000155057.wb	ENSGT00940000153567.a.a.a	ENSGT00940000153372.A.f	ENSGT00940000159379	ENSGT00940000168487	ENSGT00940000158940.a	ENSGT00390000007640.a	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00940000158155	ENSGT00730000112347
Fugu	MODERN SPECIES	9	dram1 (ENSTRUG00000032116)	gnptab (ENSTRUG00000012120)	chpt1 (ENSTRUG00000011969)	mybpc1 (ENSTRUG00000011461)	ENSTRUG00000031004	spic (ENSTRUG00000011424)	atp6v1e1b (ENSTRUG00000011314)	ADA2 (ENSTRUG00000011247)	GALNT8 (ENSTRUG00000011109)	rad51ap1 (ENSTRUG00000024004)	fgf6b (ENSTRUG00000011078)	fgf23 (ENSTRUG00000011062)	tigarb (ENSTRUG00000011015)	ccnd2b (ENSTRUG00000010895)	ENSTRUG00000010878	myf6 (ENSTRUG00000010842) #21	myf5 (ENSTRUG00000010781) #22	lin7a (ENSTRUG00000010674) #23	ACSS3 (ENSTRUG00000010633) #24	ppfia2 (ENSTRUG00000016246) #25	si:dkey-97m3.1 (ENSTRUG00000016219)	ENSTRUG00000016140	ENSTRUG00000016110	SEMA3C (ENSTRUG00000015957)	mtpn (ENSTRUG00000030378)	chrm2a (ENSTRUG00000020657)	ptn (ENSTRUG00000015924)	ENSTRUG00000015891	ENSTRUG00000029244	TULP3 (ENSTRUG00000015873)	rhno1 (ENSTRUG00000022380)
Tetraodon	MODERN SPECIES	11	ENSTNIG00000011420	ENSTNIG00000011419	washc3 (ENSTNIG00000011417)	dram1 (ENSTNIG00000001389)	gnptab (ENSTNIG00000011416)	chpt1 (ENSTNIG00000011415)	mybpc1 (ENSTNIG00000011414)	spic (ENSTNIG00000000056)	atp6v1e1b (ENSTNIG00000011413)	ADA2 (ENSTNIG00000011412)	fgf6b (ENSTNIG00000011411)	fgf23 (ENSTNIG00000011410)	tigarb (ENSTNIG00000001586)	CCND2 (ENSTNIG00000011409)	ENSTNIG00000011408	myf6 (ENSTNIG00000011407) #21	myf5 (ENSTNIG00000011406) #22	LIN7B (ENSTNIG00000011405) ##23	ENSTNIG00000000595 #24	ppfia2 (ENSTNIG00000011404) #25	si:dkey-97m3.1 (ENSTNIG00000011403)	ENSTNIG00000011402	ENSTNIG00000011401	cd36 (ENSTNIG00000011400)	SEMA3C (ENSTNIG00000011399)	ENSTNIG00000011398	chrm2a (ENSTNIG00000011397)	ptn (ENSTNIG00000011396)	ENSTNIG00000002223	foxm1 (ENSTNIG00000011394)	ENSTNIG00000011393
Eupecaria_A	ANCESTRAL SPECIES	21	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Ballan wrasse	MODERN SPECIES	288	mcat (ENSLBEG00000021435)	ENSLBEG00000021449	ttll1 (ENSLBEG00000021464)	pacsin2 (ENSLBEG00000021510)	arfgap3 (ENSLBEG00000021563)	IKBIP (ENSLBEG00000021638)	ENSLBEG00000021657	tnnt2c (ENSLBEG00000021670)	syt10 (ENSLBEG00000021731)	ENSLBEG00000021784	cyb5r3 (ENSLBEG00000021856)	syt1a (ENSLBEG00000021895) #16	pawr (ENSLBEG00000021925) #17	ppp1r12a (ENSLBEG00000021962) #18	rps16 (ENSLBEG00000022009)	myf6 (ENSLBEG00000022039) #21	myf5 (ENSLBEG00000022115) #22	lin7a (ENSLBEG00000022140) #23	ACSS3 (ENSLBEG00000022189) #24
Eupecaria_B	ANCESTRAL SPECIES	21	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Perciformes	ANCESTRAL SPECIES	18	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Perciformes_a	ANCESTRAL SPECIES	19	ENSGT00390000006088	ENSGT00390000004984.b	ENSGT00940000159081	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
Channel bull blenny	MODERN SPECIES	15	ndufa12 (ENSCGOG00000022941)	TMCC3 (ENSCGOG00000022948)	eri1 (ENSCGOG00000022952)	LAMB1 (ENSCGOG00000022966)	dclre1c (ENSCGOG00000023371)	meig1 (ENSCGOG00000023503)	tmem243b (ENSCGOG00000023504)	tnnt2c (ENSCGOG00000002697)	syt10 (ENSCGOG00000002710)	ENSCGOG00000002901	cyb5r3 (ENSCGOG00000005612)	syt1a (ENSCGOG00000005760) #16	pawr (ENSCGOG00000005900) #17	ppp1r12a (ENSCGOG00000005924) #18	rps16 (ENSCGOG00000006422)	myf6 (ENSCGOG00000006445) #21	myf5 (ENSCGOG00000006451) #22	lin7a (ENSCGOG00000006454) #23	ACSS3 (ENSCGOG00000006462) #24	ppfia2 (ENSCGOG00000006725) #25	ENSCGOG00000011470	foxm1 (ENSCGOG00000012088)	rhno1 (ENSCGOG00000012090)	TULP3 (ENSCGOG00000012093)	ENSCGOG00000012109	ptn (ENSCGOG00000012115)	chrm2a (ENSCGOG00000012120)	mtpn (ENSCGOG00000012123)	ENSCGOG00000012127	SEMA3C (ENSCGOG00000012145)	cd36 (ENSCGOG00000012920)
Pike perch	MODERN SPECIES	28	parpbp (ENSSLUG00000005238)	pmch (ENSSLUG00000005227)	IGF-I (ENSSLUG00000004805)	ENSSLUG00000004758	btbd11a (ENSSLUG00000004616)	cry1a (ENSSLUG00000003675)	MTERF2 (ENSSLUG00000003583)	syt10 (ENSSLUG00000003569)	ENSSLUG00000003558	ENSSLUG00000002793	cyb5r3 (ENSSLUG00000002598)	syt1a (ENSSLUG00000002503) #16	pawr (ENSSLUG00000002488) #17	ppp1r12a (ENSSLUG00000002356) #18	rps16 (ENSSLUG00000002321)	myf6 (ENSSLUG00000002312) #21	Myf5 (ENSSLUG00000002308) #22	lin7a (ENSSLUG00000002301) #23	ACSS3 (ENSSLUG00000001953) #24	ppfia2 (ENSSLUG00000001812) #25	ENSSLUG00000001721	washc3 (ENSSLUG00000001679)	dram1 (ENSSLUG00000001669)	gnptab (ENSSLUG00000001622)	chpt1 (ENSSLUG00000020879)	mybpc1 (ENSSLUG00000018517)	ENSSLUG00000018418	spic (ENSSLUG00000018413)	atp6v1e1b (ENSSLUG00000018403)	ADA2 (ENSSLUG00000018400)	GALNT8 (ENSSLUG00000018206)
Cottioidei	ANCESTRAL SPECIES	19	ENSGT00940000168896	ENSGT00940000159081	ENSGT00840000130048.b	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT00980000202035	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379
Stickleback	MODERN SPECIES	3	parpbp (ENSGACG00000020045)	ENSGACG00000020044	igf1 (ENSGACG00000020042)	ENSGACG00000020041	btbd11a (ENSGACG00000020040)	cry1a (ENSGACG00000020037)	ENSGACG00000020036	tnnt2c (ENSGACG00000020034)	syt10 (ENSGACG00000020031)	ENSGACG00000020026	cyb5r3 (ENSGACG00000020019)	syt1a (ENSGACG00000020017) #16	pawr (ENSGACG00000020015) #17	ppp1r12a (ENSGACG00000020012) #18	rps16 (ENSGACG00000020009)	myf6 (ENSGACG00000020008) #21	lin7a (ENSGACG00000020007) #23	ACSS3 (ENSGACG00000019999) #24	ppfia2 (ENSGACG00000019995) #25	ENSGACG00000019993	llph (ENSGACG00000019992)	hcls1 (ENSGACG00000019990)	ENSGACG00000019988	ENSGACG00000019987	guca1a (ENSGACG00000019986)	orc5 (ENSGACG00000019984)	lhfpl3 (ENSGACG00000019981)	ENSGACG00000019979	ndufb2 (ENSGACG00000019977)	KDM7A (ENSGACG00000019975)	ergic2 (ENSGACG00000019973)
Lumpfish	MODERN SPECIES	15	ENSCLMG00005010600	ENSCLMG00005010584	ENSCLMG00005022740	FUT9 (ENSCLMG00005022735)	tcp11l2 (ENSCLMG00005022733)	ppp1r12a (ENSCLMG00005022725) #18	pawr (ENSCLMG00005022721) #17	ENSCLMG00005022719	syt1a (ENSCLMG00005022718) #16	cyb5r3 (ENSCLMG00005022705)	ENSCLMG00005022685	ENSCLMG00005022678	syt10 (ENSCLMG00005022677)	tnnt2c (ENSCLMG00005022676)	rps16 (ENSCLMG00005022675)	myf6 (ENSCLMG00005022674) #21	myf5 (ENSCLMG00005022673) #22	lin7a (ENSCLMG00005022672) #23	ACSS3 (ENSCLMG00005022661) #24	ppfia2 (ENSCLMG00005022654) #25	ENSCLMG00005022642	foxm1 (ENSCLMG00005022640)	rhno1 (ENSCLMG00005022638)	TULP3 (ENSCLMG00005022637)	ENSCLMG00005022636	ENSCLMG00005022635	ptn (ENSCLMG00005022634)	chrm2a (ENSCLMG00005022632)	mtpn (ENSCLMG00005022629)	ENSCLMG00005022627	SEMA3C (ENSCLMG00005022619)
Eupecaria_C	ANCESTRAL SPECIES	18	ENSGT00940000159081	ENSGT01100000263491.a.b.a.a.a.a.b.s.b	ENSGT00400000022326.b.a.b.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT00980000202035	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379
Gilthead seabream	MODERN SPECIES	5	parpbp (ENSSAUG00010015235)	pmch (ENSSAUG00010015234)	igf1 (ENSSAUG00010015109)	ENSSAUG00010015101	btbd11a (ENSSAUG00010014766)	cry1a (ENSSAUG00010012268)	ENSSAUG00010012243	tnnt2c (ENSSAUG00010012240)	syt10 (ENSSAUG00010012236)	ENSSAUG00010020501	cyb5r3 (ENSSAUG00010020421)	syt1a (ENSSAUG00010020377) #16	pawr (ENSSAUG00010020373) #17	ppp1r12a (ENSSAUG00010020166) #18	rps16 (ENSSAUG00010020153)	myf6 (ENSSAUG00010020152) #21	myf5 (ENSSAUG00010020150) #22	lin7a (ENSSAUG00010020149) #23	ACSS3 (ENSSAUG00010019831) #24	ppfia2 (ENSSAUG00010017685) #25	ENSSAUG00010017530	foxm1 (ENSSAUG00010017515)	rhno1 (ENSSAUG00010017512)	ENSSAUG00010017509	TULP3 (ENSSAUG00010017500)	ENSSAUG00010017491	ENSSAUG00010017488	ENSSAUG00010017483	ENSSAUG00010017479	ENSSAUG00010017476	ptn (ENSSAUG00010017470)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	22	ENSGT00940000159081	ENSGT01100000263491.a.b.a.a.a.a.b.s.b	ENSGT00400000022326.b.a.b.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b	ENSGT00940000155455.g	ENSGT00530000063817.b.b	ENSGT00940000154709.a.a	ENSGT00940000158899	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000153962.b	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000166093	ENSGT00940000158804	ENSGT00730000112347	ENSGT00940000158155	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00390000007640.a	ENSGT00940000158940.a	ENSGT00430000031071	ENSGT00940000154479.a.a.b	ENSGT00940000159379	ENSGT00940000153372.A.f
European seabass	MODERN SPECIES	23	th2 (ENSDLAG00005023520)	pah (ENSDLAG00005022732)	ENSDLAG00005022698	ENSDLAG00005027036	ENSDLAG00005022693	ENSDLAG00005022472	ENSDLAG00005022457	ENSDLAG00005022452	ENSDLAG00005022430	ENSDLAG00005022300	ENSDLAG00005022253	ENSDLAG00005022245 #16	PAWR (ENSDLAG00005022241) #17	ppp1r12a (ENSDLAG00005028115) #18	ENSDLAG00005022222	myf6 (ENSDLAG00005034355) #21	myf5 (ENSDLAG00005022213) #22	lin7a (ENSDLAG00005031546) #23	ACSS3 (ENSDLAG00005021975) #24	ppfia2 (ENSDLAG00005020955) #25	ENSDLAG00005020737	ENSDLAG00005020722	ENSDLAG00005020708	ENSDLAG00005028213	ptn (ENSDLAG00005020678)	chrm2a (ENSDLAG00005032814)	mtpn (ENSDLAG00005027317)	ENSDLAG00005026666	ENSDLAG00005020518	CD36 (ENSDLAG00005020211)	ENSDLAG00005020099
Large yellow croaker	MODERN SPECIES	491	ENSLCRG00005017539	btbd11a (ENSLCRG00005017547)	cry1a (ENSLCRG00005017690)	MTERF2 (ENSLCRG00005017798)	tnnt2c (ENSLCRG00005017799)	syt10 (ENSLCRG00005017801)	ENSLCRG00005017806	cyb5r3 (ENSLCRG00005017871)	syt1a (ENSLCRG00005018056) #16	ENSLCRG00005018060	ENSLCRG00005018062	pawr (ENSLCRG00005018063) #17	ENSLCRG00005018065	ppp1r12a (ENSLCRG00005018071) #18	rps16 (ENSLCRG00005018085)	myf6 (ENSLCRG00005018091) #21	myf5 (ENSLCRG00005018093) #22	lin7a (ENSLCRG00005018096) #23	ACSS3 (ENSLCRG00005018098) #24	ppfia2 (ENSLCRG00005018255) #25	ENSLCRG00005019228	foxm1 (ENSLCRG00005019230)	rhno1 (ENSLCRG00005019231)	TULP3 (ENSLCRG00005019232)	ENSLCRG00005019233	ENSLCRG00005019241	eri1 (ENSLCRG00005019243)	dclre1c (ENSLCRG00005019246)	meig1 (ENSLCRG00005019249)	tmem243b (ENSLCRG00005010956)	ENSLCRG00005010957
Cod	MODERN SPECIES	10	ENSGMOG00000024460	ENSGMOG00000001796	ENSGMOG00000033135	ENSGMOG00000025896	ENSGMOG00000028214	ENSGMOG00000033285	ENSGMOG00000020106	ENSGMOG00000025216	ENSGMOG00000028316	ENSGMOG00000022683	ENSGMOG00000024377	ENSGMOG00000033325	ENSGMOG00000025784	ENSGMOG00000029095	ENSGMOG00000028669	myf6 (ENSGMOG00000025107) #21	myf5 (ENSGMOG00000016963) #22	lin7a (ENSGMOG00000009243) #23	ACSS3 (ENSGMOG00000015350) #24	ppfia2 (ENSGMOG00000015273) #25	ENSGMOG00000028792	ENSGMOG00000026403	ENSGMOG00000012976	ENSGMOG00000033609	ENSGMOG00000010827	ENSGMOG00000010761	ENSGMOG00000035710	ENSGMOG00000019538	ENSGMOG00000030401	ENSGMOG00000014077 #15	ENSGMOG00000013785
Otomorpha	ANCESTRAL SPECIES	204	ENSGT00390000018775	ENSGT00940000156038.b	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00510000047886.b	ENSGT00940000158014 #14	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.k.a	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h
Clupeiformes	ANCESTRAL SPECIES	62	ENSGT00390000018775	ENSGT00940000156038.b	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00510000047886.b	ENSGT00940000158014 #14	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.k.a	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000172289	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00940000159750	ENSGT00940000154814.b	ENSGT00940000156403.b
Atlantic herring	MODERN SPECIES	7	ENSCHAG00000004579	bmpr2a (ENSCHAG00000004641)	ENSCHAG00000005504	slc15a1b (ENSCHAG00000011257)	ENSCHAG00000011604	nr4a2b (ENSCHAG00000011794)	gpd2 (ENSCHAG00000011812)	ENSCHAG00000012171	optn (ENSCHAG00000012181)	ccdc3a (ENSCHAG00000012193)	camk1da (ENSCHAG00000012217)	cdc123 (ENSCHAG00000012817)	ENSCHAG00000012859	TIMM22 (ENSCHAG00000012880)	ENSCHAG00000012890	myf6 (ENSCHAG00000012902) #21	myf5 (ENSCHAG00000012907) #22	lin7a (ENSCHAG00000012925) #23	ACSS3 (ENSCHAG00000012966) #24	ENSCHAG00000013958	ENSCHAG00000013985	ppfia2 (ENSCHAG00000014083) #25	ENSCHAG00000017004	ENSCHAG00000017023	ENSCHAG00000017045	NUAK1 (ENSCHAG00000017150)	prl2 (ENSCHAG00000017173)	MID1 (ENSCHAG00000017268)	ARHGAP6 (ENSCHAG00000017388)	MSL3 (ENSCHAG00000017515)	ENSCHAG00000017610
Denticle herring	MODERN SPECIES	6	nap1l1 (ENSDCDG00000022045)	OSBPL8 (ENSDCDG00000022762) #8	zdhhc17 (ENSDCDG00000026306) #9	csrp2 (ENSDCDG00000026322) #10	e2f7 (ENSDCDG00000026324) #12	ENSDCDG00000026325	ENSDCDG00000026326	ENSDCDG00000026328	ENSDCDG00000026331	nav3 (ENSDCDG00000026354) #14	syt1a (ENSDCDG00000027575) #16	ENSDCDG00000027582	pawr (ENSDCDG00000027583) #17	ppp1r12a (ENSDCDG00000027584) #18	rps16 (ENSDCDG00000027593)	myf6 (ENSDCDG00000027598) #21	myf5 (ENSDCDG00000027600) #22	lin7a (ENSDCDG00000027602) #23	ACSS3 (ENSDCDG00000027609) #24	ppfia2 (ENSDCDG00000027692) #25	ENSDCDG00000030343	llph (ENSDCDG00000030344)	hcls1 (ENSDCDG00000030354)	ENSDCDG00000030434	guca1a (ENSDCDG00000030436)	orc5 (ENSDCDG00000030439)	lhfpl3 (ENSDCDG00000030443)	DNAH6 (ENSDCDG00000030470)	ENSDCDG00000030792	si:cabz01085950.1 (ENSDCDG00000030919)	PTPRO (ENSDCDG00000030969)
Otophysi	ANCESTRAL SPECIES	40	ENSGT00940000160727	ENSGT00390000018775	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00510000047886.b	ENSGT00940000158014 #14	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00940000159379	ENSGT00940000153372.A.f
Characiphysae	ANCESTRAL SPECIES	67	ENSGT00440000034107.b	ENSGT00390000010830	ENSGT00940000165853	ENSGT00390000018775	ENSGT00940000165334	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000158014 #14	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a.l #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00990000204681	ENSGT00940000158039.h	ENSGT00940000159379
Characiphysae_b	ANCESTRAL SPECIES	161											ENSGT00940000158014 #14	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a.l #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00940000159379	ENSGT00940000153372.A.f
Characoidei	ANCESTRAL SPECIES	182											ENSGT00940000158014 #14	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a.l #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00940000159379	ENSGT00940000153372.A.f
Red-bellied piranha	MODERN SPECIES	150						ENSPNAG00000012785	ENSPNAG00000012773	nav3 (ENSPNAG00000002385) #14	syt1a (ENSPNAG00000012718) #16	ENSPNAG00000012666	pawr (ENSPNAG00000012658) #17	ppp1r12a (ENSPNAG00000012652) #18	ENSPNAG00000012615	rps16 (ENSPNAG00000002321)	ENSPNAG00000012596	myf6 (ENSPNAG00000012583) #21	myf5 (ENSPNAG00000007179) #22	lin7a (ENSPNAG00000012563) #23	ACSS3 (ENSPNAG00000002283) #24	ppfia2 (ENSPNAG00000006898) #25	ENSPNAG00000002170
Mexicana tetra	MODERN SPECIES	22	ENSAMXG00000036150	ost4 (ENSAMXG00000025270)	ENSAMXG00000043766	agbl5 (ENSAMXG00000001121)	tmem214 (ENSAMXG00000001600)	ENSAMXG00000030619	ENSAMXG00000036395	ENSAMXG00000039430	ENSAMXG00000036999	nav3 (ENSAMXG00000016811) #14	ENSAMXG00000036051	syt1a (ENSAMXG00000000351) #16	pawr (ENSAMXG00000039462) #17	ppp1r12a (ENSAMXG00000000386) #18	rps16 (ENSAMXG00000033866)	myf6 (ENSAMXG00000000425) #21	myf5 (ENSAMXG00000000428) #22	LIN7B (ENSAMXG00000035915) ##23	ppfia2 (ENSAMXG00000006001) #25	llph (ENSAMXG00000030053)	hcls1 (ENSAMXG00000006045)	ENSAMXG00000006063	guca1a (ENSAMXG00000006082)	orc5 (ENSAMXG00000006161)	ENSAMXG00000037520	lhfpl3 (ENSAMXG00000032533)	ENSAMXG00000031350	ENSAMXG00000037828	ndufb2 (ENSAMXG00000006366)	KDM7A (ENSAMXG00000006392)	ENSAMXG00000041110
Electric eel	MODERN SPECIES	309										ENSEEEG00000014336 #14	ENSEEEG00000014337	syt1a (ENSEEEG00000014338) #16	pawr (ENSEEEG00000014348) #17	ppp1r12a (ENSEEEG00000014354) #18	rps16 (ENSEEEG00000014359)	myf6 (ENSEEEG00000014363) #21	myf5 (ENSEEEG00000014364) #22
Cyprinoidei	ANCESTRAL SPECIES	67										ENSGT00510000047886.b.ib	ENSGT00940000158014 #14	ENSGT00940000155394.i.a #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.bb #25	ENSGT00940000165344	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000009380	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00940000159379	ENSGT00940000153372.A.f
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	481																ENSGT00950000182959.a.b.b.a.i #21	ENSGT00950000182959.a.a.b #22	ENSGT00940000153222.a.a.z #23	ENSGT00940000157479.i #24	ENSGT01050000244900.a.a.a.a.b.bb.n #25	ENSGT00940000165344.f	ENSGT00940000158997.k.a	ENSGT00730000111007.a.a.j	ENSGT00940000164333.c	ENSGT00390000009380.b	ENSGT00990000203541.a.a.a.a.a.f	ENSGT00990000203541.a.a.a.a.a.e.b	ENSGT00940000157862.j	ENSGT00390000004044.a	ENSGT00940000158039.h.a	ENSGT00940000159379.e
Cyprininae_a	ANCESTRAL SPECIES	174										ENSGT00940000158014.n #14	ENSGT00940000155394.i.a.b #16	ENSGT00390000000406.l #17	ENSGT00940000156120.a.j #18	ENSGT00950000182959.a.b.b.a.j.b #21	ENSGT00950000182959.a.a.a #22	ENSGT00950000182959.a.b.b.a.i #21	ENSGT00950000182959.a.a.b #22	ENSGT00940000153222.a.a.y #23	ENSGT00940000157479.j #24	ENSGT01050000244900.a.a.a.a.b.bb.m.b #25	ENSGT00940000165344.e	ENSGT00940000158997.k.b	ENSGT00730000111007.a.a.i	ENSGT00940000164333.d	ENSGT00390000009380.a	ENSGT00990000203541.a.a.a.a.a.e.a	ENSGT00940000157862.i	ENSGT00390000004044.b	ENSGT00940000158039.h.b	ENSGT00940000159379.f	ENSGT00940000153372.A.f.k
Golden-line barbel	MODERN SPECIES	717												nav3 (ENSSGRG00000014524) #14	syt1a (ENSSGRG00000015011) #16	pawr (ENSSGRG00000015136) #17	rps16 (ENSSGRG00000015151)	myf6 (ENSSGRG00000015176) #21	myf5 (ENSSGRG00000015178) #22	lin7a (ENSSGRG00000015179) #23	ACSS3 (ENSSGRG00000015180) #24
Goldfish	MODERN SPECIES	33	napepld (ENSCARG00000016922)	rassf8b (ENSCARG00000016908) ##33	ints13 (ENSCARG00000016844)	ENSCARG00000016831	ENSCARG00000016819	ENSCARG00000016808	ENSCARG00000016803	ENSCARG00000016796	ENSCARG00000016787	ENSCARG00000016739	nav3 (ENSCARG00000014159) #14	syt1a (ENSCARG00000014000) #16	pawr (ENSCARG00000013984) #17	ppp1r12a (ENSCARG00000013705) #18	rps16 (ENSCARG00000013649)	myf6 (ENSCARG00000013643) #21	myf5 (ENSCARG00000013638) #22	lin7a (ENSCARG00000013634) #23	ENSCARG00000013631	ENSCARG00000013627	ENSCARG00000013625	BRD1 (ENSCARG00000013600)	zbed4 (ENSCARG00000013589)	alg12 (ENSCARG00000013585)	creld2 (ENSCARG00000013490)	ENSCARG00000013472	ENSCARG00000013469	mdm2 (ENSCARG00000013438)	slc35e3 (ENSCARG00000013424)	magi2a (ENSCARG00000010141)	nup107 (ENSCARG00000008124)
Cyprininae	ANCESTRAL SPECIES	94		ENSGT00940000153544.b.f	ENSGT00940000157572.a.a.b	ENSGT00940000155997.lb.a.lb.a	ENSGT00940000158409.ab	ENSGT00940000156127.t	ENSGT00390000017990.a	ENSGT00950000182839.B.a.a.k.a ##33	ENSGT00390000002793.d	ENSGT00510000047886.b.ib.a	ENSGT00940000158014.m #14	ENSGT00940000155394.i.a.a #16	ENSGT00390000000406.k #17	ENSGT00940000156120.a.i #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a.j #21	ENSGT00950000182959.a.a.a #22	ENSGT00940000153222.a.a.y #23	ENSGT00940000157479.j #24	ENSGT01050000244900.a.a.a.a.b.bb.m.b #25	ENSGT00940000165344.e	ENSGT00940000158997.k.b	ENSGT00730000111007.a.a.i	ENSGT00940000164333.d	ENSGT00390000009380.a	ENSGT00990000203541.a.a.a.a.a.e.a	ENSGT00940000157862.i	ENSGT00390000004044.b	ENSGT00940000158039.h.b	ENSGT00940000159379.f	ENSGT00940000153372.A.f.k
Cyprininae_a	DUPLICATION
Cyprininae_a	ANCESTRAL SPECIES	290	ENSGT00390000012875.d	ENSGT00940000153544.b.f	ENSGT00940000157572.a.a.b	ENSGT00940000155997.lb.a.lb.a	ENSGT00940000158409.ab	ENSGT00940000156127.t	ENSGT00390000017990.a	ENSGT00950000182839.B.a.a.k.a ##33	ENSGT00390000002793.d	ENSGT01100000263571.i.a.a.b.b	ENSGT00940000158014.m #14	ENSGT00940000155394.i.a.a #16	ENSGT00390000000406.k #17	ENSGT00940000156120.a.i #18	ENSGT00390000013067.l	ENSGT00950000182959.a.b.b.a.j.a #21	ENSGT00940000153222.a.a.z #23	ENSGT00940000157479.i #24	ENSGT01050000244900.a.a.a.a.b.bb.n #25	ENSGT00940000165344.f	ENSGT00940000158997.k.a	ENSGT00730000111007.a.a.j	ENSGT00940000164333.c	ENSGT00390000009380.b	ENSGT00990000203541.a.a.a.a.a.f	ENSGT00990000203541.a.a.a.a.a.e.b	ENSGT00940000157862.j	ENSGT00390000004044.a	ENSGT00940000158039.h.a	ENSGT00940000159379.e	ENSGT00940000153372.A.f.l
Golden-line barbel	MODERN SPECIES	4036																myf6 (ENSSGRG00000004888) #21
Common carp reference	MODERN SPECIES	8	ENSCCRG00000039900	CACNA2D4 (ENSCCRG00000013920)	dcp1b (ENSCCRG00000013880)	cacna1c (ENSCCRG00000021334)	napepld (ENSCCRG00000077775)	ENSCCRG00000003582 ##33	ENSCCRG00000059987	ENSCCRG00000055385	ENSCCRG00000073152	ENSCCRG00000018894	nav3 (ENSCCRG00000004716) #14	syt1a (ENSCCRG00000012658) #16	pawr (ENSCCRG00000074321) #17	ppp1r12a (ENSCCRG00000017869) #18	rps16 (ENSCCRG00000071173)	myf6 (ENSCCRG00000002310) #21	lin7a (ENSCCRG00000002318) #23	ACSS3 (ENSCCRG00000070205) #24	ENSCCRG00000079907	ppfia2 (ENSCCRG00000077057) #25	llph (ENSCCRG00000071942)	hcls1 (ENSCCRG00000071219)	ENSCCRG00000072639	guca1a (ENSCCRG00000059884)	lhfpl3 (ENSCCRG00000060847)	ENSCCRG00000039272	ENSCCRG00000048741	ENSCCRG00000048750	ENSCCRG00000039382	cd36 (ENSCCRG00000035158)	gnai1 (ENSCCRG00000078709)
Cyprininae_a	ANCESTRAL SPECIES	174												ENSGT00940000158014.n #14	ENSGT00940000155394.i.a.b #16	ENSGT00390000000406.l #17	ENSGT00940000156120.a.j #18	ENSGT00950000182959.a.b.b.a.j.b #21	ENSGT00950000182959.a.a.a #22	ENSGT00950000182959.a.b.b.a.i #21	ENSGT00950000182959.a.a.b #22	ENSGT00940000153222.a.a.y #23	ENSGT00940000157479.j #24	ENSGT01050000244900.a.a.a.a.b.bb.m.b #25	ENSGT00940000165344.e	ENSGT00940000158997.k.b	ENSGT00730000111007.a.a.i	ENSGT00940000164333.d	ENSGT00390000009380.a	ENSGT00990000203541.a.a.a.a.a.e.a	ENSGT00940000157862.i	ENSGT00390000004044.b	ENSGT00940000158039.h.b
Common carp reference	MODERN SPECIES	36	dcp1b (ENSCCRG00000016759)	cacna1c (ENSCCRG00000079889)	ENSCCRG00000064902 ##33	ENSCCRG00000076072	ENSCCRG00000024630	ENSCCRG00000025696	ENSCCRG00000038194	ENSCCRG00000003610	ENSCCRG00000082448	ENSCCRG00000075007	nav3 (ENSCCRG00000003878) #14	syt1a (ENSCCRG00000060462) #16	pawr (ENSCCRG00000017856) #17	ppp1r12a (ENSCCRG00000031966) #18	ENSCCRG00000031955	myf6 (ENSCCRG00000052812) #21	myf5 (ENSCCRG00000031947) #22	ENSCCRG00000002290	lin7a (ENSCCRG00000070932) #23	ACSS3 (ENSCCRG00000072702) #24	ppfia2 (ENSCCRG00000070855) #25	llph (ENSCCRG00000057054)	hcls1 (ENSCCRG00000001201)	ENSCCRG00000001214	guca1a (ENSCCRG00000070485)	lhfpl3 (ENSCCRG00000058495)	orc5 (ENSCCRG00000001236)	ENSCCRG00000039177	ndufb2 (ENSCCRG00000072248)	ENSCCRG00000035796	ENSCCRG00000033639
Goldfish	MODERN SPECIES	21	gys2 (ENSCARG00000050460)	kiss2 (ENSCARG00000050789)	ldhba (ENSCARG00000050805)	slc25a3a (ENSCARG00000004095)	tmpoa (ENSCARG00000004118)	strap (ENSCARG00000004172)	ETNK1 (ENSCARG00000004230)	sox5 (ENSCARG00000004446)	dnai7 (ENSCARG00000007038)	lrmp (ENSCARG00000007098)	bcat1 (ENSCARG00000007169)	syt1a (ENSCARG00000007182) #16	pawr (ENSCARG00000007222) #17	ppp1r12a (ENSCARG00000007240) #18	RPS16 (ENSCARG00000007629)	myf6 (ENSCARG00000007640) #21	myf5 (ENSCARG00000007648) #22	lin7a (ENSCARG00000007657) #23	ACSS3 (ENSCARG00000007733) #24	ppfia2 (ENSCARG00000008457) #25	llph (ENSCARG00000011062)	hcls1 (ENSCARG00000011091)	GOLGB1 (ENSCARG00000011371)	guca1a (ENSCARG00000011420)	orc5 (ENSCARG00000011442)	lhfpl3 (ENSCARG00000011623)	ENSCARG00000011636	ndufb2 (ENSCARG00000011648)	KDM7A (ENSCARG00000011660)	SEMA3C (ENSCARG00000011766)	cd36 (ENSCARG00000012095)
Zebrafish	MODERN SPECIES	19	CACNA2D4 (ENSDARG00000026855)	dcp1b (ENSDARG00000045484)	cacna1c (ENSDARG00000008398)	napepld (ENSDARG00000009252)	ints13 (ENSDARG00000011764)	rassf8b (ENSDARG00000045485) ##33	ENSDARG00000055245	ENSDARG00000114678	ENSDARG00000090038	ENSDARG00000090277	nav3 (ENSDARG00000005476) #14	syt1a (ENSDARG00000030614) #16	pawr (ENSDARG00000045486) #17	ppp1r12a (ENSDARG00000010784) #18	rps16 (ENSDARG00000045487)	myf6 (ENSDARG00000029830) #21	myf5 (ENSDARG00000007277) #22	lin7a (ENSDARG00000013414) #23	ACSS3 (ENSDARG00000032218) #24	ppfia2 (ENSDARG00000013000) #25	llph (ENSDARG00000055360)	hcls1 (ENSDARG00000012729)	ENSDARG00000061951	guca1a (ENSDARG00000010454)	orc5 (ENSDARG00000021579)	lhfpl3 (ENSDARG00000021595)	KMT2E (ENSDARG00000007523)	ndufb2 (ENSDARG00000045490)	kdm7aa (ENSDARG00000018111)	SEMA3C (ENSDARG00000034300)	cd36 (ENSDARG00000032639)
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	251	ENSGT00390000010830	ENSGT00390000018775	ENSGT00940000165334	ENSGT00440000039564.b.a	ENSGT00940000153362.a.d	ENSGT00940000156622.a #8	ENSGT00530000063074.b.b.c #9	ENSGT00940000154980.db #10	ENSGT00940000157713.b #12	ENSGT00940000158014.a.b #14	ENSGT00390000000406.n #17	ENSGT00940000156120.a.a #18	ENSGT00390000013067.l	ENSGT00940000160698 #19	ENSGT00940000167492.i	ENSGT00950000182959.a.b.b.a.k #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.`b #25
P. kingsleyae	MODERN SPECIES	330									ENSPKIG00000003485 #14	syt1a (ENSPKIG00000003538) #16	PAWR (ENSPKIG00000003600) #17	ppp1r12a (ENSPKIG00000003762) #18	rps16 (ENSPKIG00000004000)	OTOGL (ENSPKIG00000004061) #19	ENSPKIG00000004182	myf6 (ENSPKIG00000004248) #21	myf5 (ENSPKIG00000004272) #22	lin7a (ENSPKIG00000004317) #23	ACSS3 (ENSPKIG00000004377) #24	ppfia2 (ENSPKIG00000004590) #25
Asian bonytongue	MODERN SPECIES	16	cmah (ENSSFOG00015018402)	krr1 (ENSSFOG00015031941)	phlda1 (ENSSFOG00015033220)	nap1l1 (ENSSFOG00015018510)	OSBPL8 (ENSSFOG00015018553) #8	zdhhc17 (ENSSFOG00015018700) #9	csrp2 (ENSSFOG00015018779) #10	nav3 (ENSSFOG00015018832) #14	ENSSFOG00015018791	syt1a (ENSSFOG00015031929) #16	PAWR (ENSSFOG00015019109) #17	ppp1r12a (ENSSFOG00015019159) #18	rps16 (ENSSFOG00015019382)	OTOGL (ENSSFOG00015019419) #19	ENSSFOG00015019468	myf6 (ENSSFOG00015019606) #21	myf5 (ENSSFOG00015019621) #22	lin7a (ENSSFOG00015019629) #23	ACSS3 (ENSSFOG00015019639) #24	ppfia2 (ENSSFOG00015019713) #25	TMTC2 (ENSSFOG00015019839) #29	ENSSFOG00015029516	IQSEC3 (ENSSFOG00015019895)	ENSSFOG00015019921	ddx11 (ENSSFOG00015019931)	fkbp4 (ENSSFOG00015019964)	ENSSFOG00015019985	ENSSFOG00015020008	ENSSFOG00015020016	tnni1c (ENSSFOG00015020045)	c2cd5 (ENSSFOG00015020202)
Osteoglossiformes	ANCESTRAL SPECIES																	ENSGT00950000182959.a.b.b.a.l #21
P. kingsleyae	MODERN SPECIES	123	nap1l1 (ENSPKIG00000002599)	BBS10 (ENSPKIG00000002580) #7	OSBPL8 (ENSPKIG00000002490) #8	zdhhc17 (ENSPKIG00000002371) #9	csrp2 (ENSPKIG00000002306) #10	e2f7 (ENSPKIG00000002278) #12	ENSPKIG00000002256	nav3 (ENSPKIG00000002193) #14	syt1a (ENSPKIG00000002150) #16	pawr (ENSPKIG00000002134) #17	ENSPKIG00000002120	ppp1r12a (ENSPKIG00000002012) #18	rps16 (ENSPKIG00000001864)	ENSPKIG00000001847	ENSPKIG00000001785	MYF6 (ENSPKIG00000001745) #21	lin7a (ENSPKIG00000001713) #23	ppfia2 (ENSPKIG00000001660) #25
Reedfish	MODERN SPECIES		arfgap3 (ENSECRG00000009110)	pacsin2 (ENSECRG00000009143)	ttll1 (ENSECRG00000009159)	mcat (ENSECRG00000009176)	ENSECRG00000009184	nav3 (ENSECRG00000009243) #14	syt1a (ENSECRG00000009372) #16	pawr (ENSECRG00000009402) #17	ENSECRG00000009415	ENSECRG00000009427 #18	ENSECRG00000009442	rps16 (ENSECRG00000009451)	OTOGL (ENSECRG00000009486) #19	ENSECRG00000009546	PTPRQ (ENSECRG00000009623) #20	myf6 (ENSECRG00000009908) #21	ENSECRG00000009918 ##22	lin7a (ENSECRG00000009937) #23	ACSS3 (ENSECRG00000009948) #24	ppfia2 (ENSECRG00000010095) #25	ccdc59 (ENSECRG00000010497) #27	mettl25 (ENSECRG00000010503) #28	ENSECRG00000010511	tmtc2a (ENSECRG00000010528) #29	SLC6A15 (ENSECRG00000010556) #30	alx1 (ENSECRG00000010569) #31	RASSF9 (ENSECRG00000010575) #33	NTS (ENSECRG00000010584) #34	ENSECRG00000010592	zgc:103499 (ENSECRG00000010598) #37	ENSECRG00000010606
Sarcopterygii	ANCESTRAL SPECIES	8	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00660000096975	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00500000044938 #37	ENSGT00730000111039.C	ENSGT00940000157538
Coelacanth	MODERN SPECIES	512													ENSLACG00000000110	ENSLACG00000006049	PTPRQ (ENSLACG00000008359) #20	MYF6 (ENSLACG00000010731) #21	LIN7A (ENSLACG00000011681) #23	ACSS3 (ENSLACG00000012601) #24	ppfia2 (ENSLACG00000013750) #25	ENSLACG00000014963	ENSLACG00000016017 #25	ENSLACG00000016219	CCDC59 (ENSLACG00000016632) #27	METTL25 (ENSLACG00000016693) #28
Tetrapoda	ANCESTRAL SPECIES	5	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00660000096975	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000167105	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34
Anura	ANCESTRAL SPECIES		ENSGT00940000157129	ENSGT00940000155834	ENSGT00940000162446	ENSGT00940000164439	ENSGT00940000154098.a	ENSGT00730000111360	ENSGT00390000008708	ENSGT00940000157255	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00660000096975	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000167105	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Frog	MODERN SPECIES	3	ENSXETG00000049231	c12orf63 (ENSXETG00000045266)	nedd1 (ENSXETG00000021683)	ENSXETG00000034921	ENSXETG00000032908	tmpo (ENSXETG00000018759)	slc25a3 (ENSXETG00000018767)	ENSXETG00000045338	nuak1 (ENSXETG00000018772)	avpr1a (ENSXETG00000018781)	ppm1h (ENSXETG00000018793)	ptpn3 (ENSXETG00000018796)	rps16 (ENSXETG00000018809)	OTOGL (ENSXETG00000014502) #19	PTPRQ (ENSXETG00000030349) #20	myf6 (ENSXETG00000027340) #21	myf5 (ENSXETG00000014520) #22	lin7a (ENSXETG00000014525) #23	acss3 (ENSXETG00000014528) #24	ppfia2 (ENSXETG00000014532) #25	ccdc59 (ENSXETG00000014539) #27	mettl25 (ENSXETG00000014540) #28	ENSXETG00000047662	tmtc2 (ENSXETG00000021370) #29	ENSXETG00000042111	slc6a15 (ENSXETG00000021372) #30	lrriq1 (ENSXETG00000037765)	alx1 (ENSXETG00000021397) #31	rassf9 (ENSXETG00000011745) #33	nts (ENSXETG00000040562) #34	mgat4c (ENSXETG00000011744) #35
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000014201	ENSLLEG00000016337	ENSLLEG00000016597	ENSLLEG00000016633	ENSLLEG00000016847	NUAK1 (ENSLLEG00000017219)	AVPR1A (ENSLLEG00000017308)	PPM1H (ENSLLEG00000017365)	ENSLLEG00000017515	MON2 (ENSLLEG00000017568)	ENSLLEG00000018351	ENSLLEG00000018379	OTOGL (ENSLLEG00000018482) #19	ENSLLEG00000019169	PTPRQ (ENSLLEG00000019234) #20	MYF6 (ENSLLEG00000020820) #21	MYF5 (ENSLLEG00000020856) #22	LIN7A (ENSLLEG00000020908) #23	ENSLLEG00000021060	ACSS3 (ENSLLEG00000021119) #24	ENSLLEG00000021608	PPFIA2 (ENSLLEG00000021708) #25	ENSLLEG00000023610	CCDC59 (ENSLLEG00000023716) #27	METTL25 (ENSLLEG00000023763) #28	ENSLLEG00000024005	TMTC2 (ENSLLEG00000024034) #29	SLC6A15 (ENSLLEG00000024199) #30	ENSLLEG00000024506	ENSLLEG00000024610	ENSLLEG00000025376
Amniota	ANCESTRAL SPECIES	5	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Mammalia	ANCESTRAL SPECIES	8	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Platypus	MODERN SPECIES	5	ENSOANG00000012140	KRR1 (ENSOANG00000014451)	ENSOANG00000047378	ENSOANG00000004688	ENSOANG00000037830 #7	OSBPL8 (ENSOANG00000011301) #8	ZDHHC17 (ENSOANG00000047613) #9	CSRP2 (ENSOANG00000007447) #10	E2F7 (ENSOANG00000007450) #12	NAV3 (ENSOANG00000007451) #14	SYT1 (ENSOANG00000007531) #16	PAWR (ENSOANG00000043356) #17	PPP1R12A (ENSOANG00000001685) #18	OTOGL (ENSOANG00000004859) #19	PTPRQ (ENSOANG00000004855) #20	MYF6 (ENSOANG00000004854) #21	MYF5 (ENSOANG00000004853) #22	ENSOANG00000041857 #23	ACSS3 (ENSOANG00000004851) #24	PPFIA2 (ENSOANG00000004850) #25	ENSOANG00000042867 #27	ENSOANG00000004849 #28	TMTC2 (ENSOANG00000015210) #29	SLC6A15 (ENSOANG00000006324) #30	ENSOANG00000050599	ENSOANG00000006648	ALX1 (ENSOANG00000006647) #31	RASSF9 (ENSOANG00000006646) #33	NTS (ENSOANG00000006645) #34	MGAT4C (ENSOANG00000006644) #35	C12orf29 (ENSOANG00000006642) #37
Theria	ANCESTRAL SPECIES	2	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Marsupialia	ANCESTRAL SPECIES	11	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.k	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Opossum	MODERN SPECIES	7	KRR1 (ENSMODG00000020451)	ENSMODG00000044376	ENSMODG00000020456	ENSMODG00000020458 #7	OSBPL8 (ENSMODG00000020459) #8	ENSMODG00000048422 #9	ENSMODG00000020464 #10	E2F7 (ENSMODG00000020465) #12	NAV3 (ENSMODG00000020466) #14	SYT1 (ENSMODG00000020467) #16	PAWR (ENSMODG00000020468) #17	PPP1R12A (ENSMODG00000020471) #18	ENSMODG00000025012	OTOGL (ENSMODG00000020473) #19	PTPRQ (ENSMODG00000020476) #20	MYF6 (ENSMODG00000039074) #21	MYF5 (ENSMODG00000020478) #22	LIN7A (ENSMODG00000020479) #23	ENSMODG00000037278	ACSS3 (ENSMODG00000020480) #24	ENSMODG00000020481 #25	ENSMODG00000020484 #27	METTL25 (ENSMODG00000020485) #28	TMTC2 (ENSMODG00000020487) #29	ENSMODG00000020488	SLC6A15 (ENSMODG00000020492) #30	ALX1 (ENSMODG00000020494) #31	ENSMODG00000041685	RASSF9 (ENSMODG00000020496) #33	NTS (ENSMODG00000020497) #34	MGAT4C (ENSMODG00000047285) #35
Marsupialia_b	ANCESTRAL SPECIES	13	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.k	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Diprotodontia	ANCESTRAL SPECIES	8	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.k	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Diprotodontia_a	ANCESTRAL SPECIES	8	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.k	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Common wonbat	MODERN SPECIES	1095	OSBPL8 (ENSVURG00010002089) #8	ZDHHC17 (ENSVURG00010002037) #9	CSRP2 (ENSVURG00010002008) #10	E2F7 (ENSVURG00010001992) #12	ENSVURG00010001969	ENSVURG00010001942	ENSVURG00010001934	NAV3 (ENSVURG00010001745) #14	ENSVURG00010001638	ENSVURG00010001581	SYT1 (ENSVURG00010001565) #16	PAWR (ENSVURG00010001479) #17	PPP1R12A (ENSVURG00010001421) #18	OTOGL (ENSVURG00010001281) #19	PTPRQ (ENSVURG00010001162) #20	MYF6 (ENSVURG00010001122) #21	MYF5 (ENSVURG00010001088) #22	LIN7A (ENSVURG00010001078) #23	ACSS3 (ENSVURG00010000986) #24	PPFIA2 (ENSVURG00010000931) #25	CCDC59 (ENSVURG00010000865) #27	METTL25 (ENSVURG00010000829) #28	TMTC2 (ENSVURG00010000692) #29	ENSVURG00010000644	ENSVURG00010000614	ENSVURG00010000610	SLC6A15 (ENSVURG00010000556) #30	ENSVURG00010000506	ALX1 (ENSVURG00010000474) #31	RASSF9 (ENSVURG00010000436) #33	NTS (ENSVURG00010015898) #34
koala	MODERN SPECIES	51						ZDHHC17 (ENSPCIG00000005890) #9	CSRP2 (ENSPCIG00000005894) #10	E2F7 (ENSPCIG00000025823) #12	NAV3 (ENSPCIG00000025666) #14	ENSPCIG00000026362	SYT1 (ENSPCIG00000032719) #16	PAWR (ENSPCIG00000026365) #17	PPP1R12A (ENSPCIG00000026366) #18	OTOGL (ENSPCIG00000026368) #19	PTPRQ (ENSPCIG00000029148) #20	MYF6 (ENSPCIG00000029149) #21	MYF5 (ENSPCIG00000029150) #22	LIN7A (ENSPCIG00000029151) #23	ACSS3 (ENSPCIG00000035215) #24	PPFIA2 (ENSPCIG00000024777) #25	CCDC59 (ENSPCIG00000007808) #27	METTL25 (ENSPCIG00000007809) #28	TMTC2 (ENSPCIG00000032378) #29	ENSPCIG00000011311	SLC6A15 (ENSPCIG00000027156) #30	ENSPCIG00000009153	ALX1 (ENSPCIG00000021266) #31	RASSF9 (ENSPCIG00000002684) #33	NTS (ENSPCIG00000009584) #34	MGAT4C (ENSPCIG00000034460) #35	C12orf50 (ENSPCIG00000000703) #36
Wallaby	MODERN SPECIES	1972																MYF6 (ENSMEUG00000010618) #21	MYF5 (ENSMEUG00000010628) #22
Tasmanian devil	MODERN SPECIES	4	ENSSHAG00000000387	KRR1 (ENSSHAG00000001646)	ENSSHAG00000031318	NAP1L1 (ENSSHAG00000002304)	BBS10 (ENSSHAG00000001800) #7	OSBPL8 (ENSSHAG00000023268) #8	ZDHHC17 (ENSSHAG00000022371) #9	CSRP2 (ENSSHAG00000005571) #10	E2F7 (ENSSHAG00000002919) #12	NAV3 (ENSSHAG00000001971) #14	SYT1 (ENSSHAG00000009436) #16	ENSSHAG00000022708 #17	PPP1R12A (ENSSHAG00000005280) #18	OTOGL (ENSSHAG00000010191) #19	PTPRQ (ENSSHAG00000022062) #20	MYF6 (ENSSHAG00000013331) #21	MYF5 (ENSSHAG00000013391) #22	LIN7A (ENSSHAG00000029974) #23	ENSSHAG00000025569	ACSS3 (ENSSHAG00000005298) #24	PPFIA2 (ENSSHAG00000007734) #25	ENSSHAG00000032226	CCDC59 (ENSSHAG00000031706) #27	METTL25 (ENSSHAG00000007147) #28	ENSSHAG00000030042	TMTC2 (ENSSHAG00000031167) #29	SLC6A15 (ENSSHAG00000003371) #30	ENSSHAG00000031034	ALX1 (ENSSHAG00000010658) #31	RASSF9 (ENSSHAG00000006974) #33	NTS (ENSSHAG00000007922) #34
Eutheria	ANCESTRAL SPECIES	1	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Atlantogenata	ANCESTRAL SPECIES	16	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Afrotheria	ANCESTRAL SPECIES	8	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Afrotheria_a	ANCESTRAL SPECIES	8	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Elephant	MODERN SPECIES	196	KRR1 (ENSLAFG00000015986)	ENSLAFG00000008030	NAP1L1 (ENSLAFG00000005711)	BBS10 (ENSLAFG00000009397) #7	OSBPL8 (ENSLAFG00000009398) #8	ZDHHC17 (ENSLAFG00000006732) #9	CSRP2 (ENSLAFG00000006735) #10	ENSLAFG00000028909	E2F7 (ENSLAFG00000017902) #12	NAV3 (ENSLAFG00000001793) #14	SYT1 (ENSLAFG00000013359) #16	ENSLAFG00000007186 #17	PPP1R12A (ENSLAFG00000014619) #18	ENSLAFG00000016020 #19	PTPRQ (ENSLAFG00000009382) #20	MYF6 (ENSLAFG00000016476) #21	MYF5 (ENSLAFG00000016473) #22	LIN7A (ENSLAFG00000014801) #23	ACSS3 (ENSLAFG00000011051) #24	PPFIA2 (ENSLAFG00000011055) #25	CCDC59 (ENSLAFG00000015368) #27	METTL25 (ENSLAFG00000015370) #28	TMTC2 (ENSLAFG00000018670) #29	ENSLAFG00000029547	SLC6A15 (ENSLAFG00000006073) #30	ENSLAFG00000020855	ALX1 (ENSLAFG00000013544) #31	RASSF9 (ENSLAFG00000028247) #33	NTS (ENSLAFG00000005894) #34	MGAT4C (ENSLAFG00000007280) #35	C12orf50 (ENSLAFG00000005231) #36
Hyrax	MODERN SPECIES	969																MYF6 (ENSPCAG00000001692) #21	MYF5 (ENSPCAG00000001722) #22
Tenrec	MODERN SPECIES	16487																ENSETEG00000011256 #21	MYF5 (ENSETEG00000011255) #22
Xenarthra	ANCESTRAL SPECIES	724														ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25
Armadillo	MODERN SPECIES	1911														OTOGL (ENSDNOG00000036627) #19	PTPRQ (ENSDNOG00000031827) #20	MYF6 (ENSDNOG00000019387) #21	MYF5 (ENSDNOG00000034747) #22	LIN7A (ENSDNOG00000024299) #23	ACSS3 (ENSDNOG00000015337) #24	PPFIA2 (ENSDNOG00000015350) #25
Boreoeutheria	ANCESTRAL SPECIES	6	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Laurasiatheria	ANCESTRAL SPECIES	6	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Eulipotyphla	ANCESTRAL SPECIES	1068																ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22
Common shrew	MODERN SPECIES	12722																MYF6 (ENSSARG00000008211) #21	MYF5 (ENSSARG00000008217) #22
Laurasiatheria_a	ANCESTRAL SPECIES	6	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Artiodactyla	ANCESTRAL SPECIES	6	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Suina	ANCESTRAL SPECIES	4	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Chacoan peccary	MODERN SPECIES	871	KRR1 (ENSCWAG00000005721)	ENSCWAG00000005880	PHLDA1 (ENSCWAG00000005900)	NAP1L1 (ENSCWAG00000005937)	BBS10 (ENSCWAG00000006105) #7	OSBPL8 (ENSCWAG00000006143) #8	ZDHHC17 (ENSCWAG00000006304) #9	CSRP2 (ENSCWAG00000006361) #10	E2F7 (ENSCWAG00000006403) #12	NAV3 (ENSCWAG00000006671) #14	SYT1 (ENSCWAG00000007382) #16	PAWR (ENSCWAG00000007454) #17	PPP1R12A (ENSCWAG00000007564) #18	OTOGL (ENSCWAG00000007720) #19	PTPRQ (ENSCWAG00000009402) #20	MYF6 (ENSCWAG00000010168) #21	MYF5 (ENSCWAG00000010199) #22	LIN7A (ENSCWAG00000010238) #23	ACSS3 (ENSCWAG00000010300) #24	PPFIA2 (ENSCWAG00000010523) #25	CCDC59 (ENSCWAG00000013098) #27	METTL25 (ENSCWAG00000013127) #28	TMTC2 (ENSCWAG00000013168) #29
Pig	MODERN SPECIES	13		ENSSSCG00000025041	ZDHHC17 (ENSSSCG00000000952) #9	CSRP2 (ENSSSCG00000000951) #10	ENSSSCG00000043521	E2F7 (ENSSSCG00000000950) #12	ENSSSCG00000044299	NAV3 (ENSSSCG00000029249) #14	ENSSSCG00000052129	ENSSSCG00000049637	SYT1 (ENSSSCG00000000948) #16	PAWR (ENSSSCG00000036560) #17	PPP1R12A (ENSSSCG00000038973) #18	OTOGL (ENSSSCG00000000943) #19	PTPRQ (ENSSSCG00000031716) #20	MYF6 (ENSSSCG00000026533) #21	MYF5 (ENSSSCG00000000937) #22	ENSSSCG00000042719	LIN7A (ENSSSCG00000040348) #23	ACSS3 (ENSSSCG00000000939) #24	PPFIA2 (ENSSSCG00000000940) #25	CCDC59 (ENSSSCG00000038987) #27	METTL25 (ENSSSCG00000000941) #28	TMTC2 (ENSSSCG00000024065) #29	ENSSSCG00000042278	SLC6A15 (ENSSSCG00000000936) #30	TSPAN19 (ENSSSCG00000040399)	LRRIQ1 (ENSSSCG00000000934)	ALX1 (ENSSSCG00000036744) #31	RASSF9 (ENSSSCG00000034948) #33	NTS (ENSSSCG00000000932) #34
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Camelidae	ANCESTRAL SPECIES	39	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Alpaca	MODERN SPECIES	1669														ENSVPAG00000001924	ENSVPAG00000001925 #20	MYF6 (ENSVPAG00000001926) #21	MYF5 (ENSVPAG00000001927) #22	LIN7A (ENSVPAG00000001928) #23	ACSS3 (ENSVPAG00000001929) #24	PPFIA2 (ENSVPAG00000001930) #25	CCDC59 (ENSVPAG00000001931) #27	METTL25 (ENSVPAG00000001932) #28
Arabian camel	MODERN SPECIES	3	ENSCDRG00005017128	ENSCDRG00005017029	PHLDA1 (ENSCDRG00005016995)	NAP1L1 (ENSCDRG00005016698)	BBS10 (ENSCDRG00005016659) #7	OSBPL8 (ENSCDRG00005016392) #8	ZDHHC17 (ENSCDRG00005016120) #9	CSRP2 (ENSCDRG00005016043) #10	E2F7 (ENSCDRG00005015968) #12	NAV3 (ENSCDRG00005014880) #14	SYT1 (ENSCDRG00005014660) #16	PAWR (ENSCDRG00005014596) #17	PPP1R12A (ENSCDRG00005012542) #18	OTOGL (ENSCDRG00005010509) #19	PTPRQ (ENSCDRG00005009356) #20	MYF6 (ENSCDRG00005009281) #21	MYF5 (ENSCDRG00005009235) #22	LIN7A (ENSCDRG00005009181) #23	ACSS3 (ENSCDRG00005008842) #24	PPFIA2 (ENSCDRG00005005786) #25	CCDC59 (ENSCDRG00005005635) #27	METTL25 (ENSCDRG00005005578) #28	TMTC2 (ENSCDRG00005005499) #29	SLC6A15 (ENSCDRG00005005426) #30	TSPAN19 (ENSCDRG00005005374)	LRRIQ1 (ENSCDRG00005005175)	ALX1 (ENSCDRG00005005138) #31	RASSF9 (ENSCDRG00005005130) #33	NTS (ENSCDRG00005005109) #34	MGAT4C (ENSCDRG00005005093) #35	C12orf50 (ENSCDRG00005021566) #36
Artiodactyla_b	ANCESTRAL SPECIES	5	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Cetacea	ANCESTRAL SPECIES	8	ENSGT00390000014572.eb.b	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000154172.ab.b	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Odontoceti	ANCESTRAL SPECIES	7	ENSGT00390000014572.eb.b	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000154172.ab.b	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Odontoceti_a	ANCESTRAL SPECIES	6	ENSGT00390000014572.eb.b	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000154172.ab.b	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00390000014572.eb.b	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000154172.ab.b	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00390000004735.A.n	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.bb.a #10	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000154172.ab.b	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00390000004735.A.n	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Beluga whale	MODERN SPECIES	39	BBS10 (ENSDLEG00000007426) #7	OSBPL8 (ENSDLEG00000007401) #8	ENSDLEG00000007371	ZDHHC17 (ENSDLEG00000007362) #9	CSRP2 (ENSDLEG00000007353) #10	ENSDLEG00000007329 #12	ENSDLEG00000007322 #12	NAV3 (ENSDLEG00000006608) #14	SYT1 (ENSDLEG00000006456) #16	ENSDLEG00000006452	PAWR (ENSDLEG00000006445) #17	ENSDLEG00000006442	PPP1R12A (ENSDLEG00000006433) #18	OTOGL (ENSDLEG00000006234) #19	PTPRQ (ENSDLEG00000006066) #20	MYF6 (ENSDLEG00000006023) #21	MYF5 (ENSDLEG00000006018) #22	LIN7A (ENSDLEG00000005973) #23	ACSS3 (ENSDLEG00000005911) #24	PPFIA2 (ENSDLEG00000005438) #25
Narwhal	MODERN SPECIES	313	NAP1L1 (ENSMMNG00015016626)	BBS10 (ENSMMNG00015017120) #7	OSBPL8 (ENSMMNG00015017163) #8	ZDHHC17 (ENSMMNG00015017285) #9	ENSMMNG00015017474	CSRP2 (ENSMMNG00015017494) #10	E2F7 (ENSMMNG00015017553) #12	NAV3 (ENSMMNG00015017728) #14	SYT1 (ENSMMNG00015017994) #16	PAWR (ENSMMNG00015018035) #17	ENSMMNG00015018085	PPP1R12A (ENSMMNG00015018194) #18	ENSMMNG00015018420	OTOGL (ENSMMNG00015018567) #19	PTPRQ (ENSMMNG00015019359) #20	MYF6 (ENSMMNG00015019715) #21	MYF5 (ENSMMNG00015019736) #22	LIN7A (ENSMMNG00015019774) #23	ENSMMNG00015019830	ACSS3 (ENSMMNG00015019853) #24	PPFIA2 (ENSMMNG00015020218) #25	CCDC59 (ENSMMNG00015020720) #27	METTL25 (ENSMMNG00015020747) #28	TMTC2 (ENSMMNG00015020798) #29	FAM50A (ENSMMNG00015020820)	SLC6A15 (ENSMMNG00015020847) #30	TSPAN19 (ENSMMNG00015020883)	LRRIQ1 (ENSMMNG00015020965)	ALX1 (ENSMMNG00015020997) #31	RASSF9 (ENSMMNG00015021023) #33	NTS (ENSMMNG00015021038) #34
Vaquita	MODERN SPECIES	1	BBS10 (ENSPSNG00000011255) #7	OSBPL8 (ENSPSNG00000010975) #8	ENSPSNG00000010941	ENSPSNG00000010920	ZDHHC17 (ENSPSNG00000010872) #9	CSRP2 (ENSPSNG00000010823) #10	E2F7 (ENSPSNG00000010547) #12	NAV3 (ENSPSNG00000009074) #14	ENSPSNG00000008562	SYT1 (ENSPSNG00000008513) #16	PAWR (ENSPSNG00000008439) #17	ENSPSNG00000008403	PPP1R12A (ENSPSNG00000008207) #18	OTOGL (ENSPSNG00000007188) #19	PTPRQ (ENSPSNG00000006652) #20	MYF6 (ENSPSNG00000006531) #21	MYF5 (ENSPSNG00000006510) #22	LIN7A (ENSPSNG00000006484) #23	ACSS3 (ENSPSNG00000006403) #24	PPFIA2 (ENSPSNG00000005685) #25	ENSPSNG00000005450 #27	METTL25 (ENSPSNG00000005420) #28	FAM50A (ENSPSNG00000005402)	TMTC2 (ENSPSNG00000005299) #29	ENSPSNG00000005260	SLC6A15 (ENSPSNG00000005229) #30	TSPAN19 (ENSPSNG00000005188)	LRRIQ1 (ENSPSNG00000005070)	ALX1 (ENSPSNG00000005010) #31	RASSF9 (ENSPSNG00000004990) #33	NTS (ENSPSNG00000004962) #34
Dolphin	MODERN SPECIES	622															ENSTTRG00000014683 #20	MYF6 (ENSTTRG00000014689) #21	MYF5 (ENSTTRG00000014691) #22	LIN7A (ENSTTRG00000014693) #23	ACSS3 (ENSTTRG00000014696) #24	PPFIA2 (ENSTTRG00000014699) #25
Sperm whale	MODERN SPECIES	17	NAP1L1 (ENSPCTG00005009406)	ENSPCTG00005009623	ENSPCTG00005009647	BBS10 (ENSPCTG00005009666) #7	OSBPL8 (ENSPCTG00005009709) #8	ZDHHC17 (ENSPCTG00005009874) #9	CSRP2 (ENSPCTG00005009938) #10	E2F7 (ENSPCTG00005009995) #12	NAV3 (ENSPCTG00005010415) #14	SYT1 (ENSPCTG00005012311) #16	PAWR (ENSPCTG00005012474) #17	PPP1R12A (ENSPCTG00005012575) #18	ENSPCTG00005012953	OTOGL (ENSPCTG00005013033) #19	PTPRQ (ENSPCTG00005015293) #20	MYF6 (ENSPCTG00005016374) #21	MYF5 (ENSPCTG00005016429) #22	LIN7A (ENSPCTG00005016469) #23	ACSS3 (ENSPCTG00005016578) #24	PPFIA2 (ENSPCTG00005017124) #25	CCDC59 (ENSPCTG00005020122) #27	METTL25 (ENSPCTG00005020146) #28	ENSPCTG00005020220	TMTC2 (ENSPCTG00005020242) #29	SLC6A15 (ENSPCTG00005020350) #30	TSPAN19 (ENSPCTG00005020436)	LRRIQ1 (ENSPCTG00005020500)	ALX1 (ENSPCTG00005020630) #31	RASSF9 (ENSPCTG00005020645) #33	NTS (ENSPCTG00005020672) #34	MGAT4C (ENSPCTG00005020711) #35
Blue whale	MODERN SPECIES	1	PHLDA1 (ENSBMSG00010020734)	NAP1L1 (ENSBMSG00010020766)	BBS10 (ENSBMSG00010020864) #7	OSBPL8 (ENSBMSG00010020883) #8	ZDHHC17 (ENSBMSG00010020913) #9	CSRP2 (ENSBMSG00010020929) #10	E2F7 (ENSBMSG00010020948) #12	NAV3 (ENSBMSG00010021020) #14	ENSBMSG00010021165	SYT1 (ENSBMSG00010021177) #16	PAWR (ENSBMSG00010021183) #17	PPP1R12A (ENSBMSG00010021198) #18	ENSBMSG00010021208	OTOGL (ENSBMSG00010021255) #19	PTPRQ (ENSBMSG00010007468) #20	MYF6 (ENSBMSG00010007564) #21	MYF5 (ENSBMSG00010007571) #22	LIN7A (ENSBMSG00010007592) #23	ENSBMSG00010007609	ACSS3 (ENSBMSG00010007621) #24	PPFIA2 (ENSBMSG00010007808) #25	CCDC59 (ENSBMSG00010008631) #27	METTL25 (ENSBMSG00010008637) #28	ENSBMSG00010008650	TMTC2 (ENSBMSG00010008658) #29	ENSBMSG00010008664	SLC6A15 (ENSBMSG00010008679) #30	TSPAN19 (ENSBMSG00010008692)	LRRIQ1 (ENSBMSG00010008720)	ALX1 (ENSBMSG00010008770) #31	ENSBMSG00010008780
Pecora	ANCESTRAL SPECIES	3	ENSGT00440000039564.b	ENSGT00940000153362.a.cb	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Yarkand deer	MODERN SPECIES	22	ENSCHYG00000008327	OSBPL8 (ENSCHYG00000008637) #8	ZDHHC17 (ENSCHYG00000009052) #9	CSRP2 (ENSCHYG00000009422) #10	ENSCHYG00000009520	E2F7 (ENSCHYG00000009596) #12	ENSCHYG00000009932	NAV3 (ENSCHYG00000010069) #14	ENSCHYG00000011512 ##13	SYT1 (ENSCHYG00000011518) #16	PAWR (ENSCHYG00000011616) #17	ENSCHYG00000011841	PPP1R12A (ENSCHYG00000011940) #18	OTOGL (ENSCHYG00000013254) #19	PTPRQ (ENSCHYG00000015685) #20	MYF6 (ENSCHYG00000017934) #21	MYF5 (ENSCHYG00000018006) #22	LIN7A (ENSCHYG00000018063) #23	ACSS3 (ENSCHYG00000018161) #24	PPFIA2 (ENSCHYG00000018601) #25	ENSCHYG00000021532	CCDC59 (ENSCHYG00000021567) #27	METTL25 (ENSCHYG00000021623) #28	TMTC2 (ENSCHYG00000021769) #29	SLC6A15 (ENSCHYG00000021957) #30	TSPAN19 (ENSCHYG00000022031)	LRRIQ1 (ENSCHYG00000022133)	ALX1 (ENSCHYG00000022696) #31	RASSF9 (ENSCHYG00000022760) #33	NTS (ENSCHYG00000022786) #34	MGAT4C (ENSCHYG00000022826) #35
Percora_a	ANCESTRAL SPECIES	3	ENSGT00440000039564.b	ENSGT00940000153362.a.cb	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Siberian musk deer	MODERN SPECIES	162										NAV3 (ENSMMSG00000008114) #14	SYT1 (ENSMMSG00000009031) #16	PAWR (ENSMMSG00000009120) #17	PPP1R12A (ENSMMSG00000009175) #18	OTOGL (ENSMMSG00000009620) #19	PTPRQ (ENSMMSG00000010710) #20	MYF6 (ENSMMSG00000011253) #21	MYF5 (ENSMMSG00000011275) #22	LIN7A (ENSMMSG00000011300) #23	ACSS3 (ENSMMSG00000011333) #24	ENSMMSG00000011493	PPFIA2 (ENSMMSG00000011641) #25	CCDC59 (ENSMMSG00000013247) #27	METTL25 (ENSMMSG00000013268) #28	TMTC2 (ENSMMSG00000013292) #29	SLC6A15 (ENSMMSG00000013333) #30	TSPAN19 (ENSMMSG00000013408)	LRRIQ1 (ENSMMSG00000013457)	ALX1 (ENSMMSG00000013694) #31	RASSF9 (ENSMMSG00000013706) #33	NTS (ENSMMSG00000013716) #34	MGAT4C (ENSMMSG00000013742) #35
Bovidae	ANCESTRAL SPECIES	3	ENSGT00940000153362.a.cb.b	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00390000012446.o.b	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000013187.b	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Caprinae	DUPLICATION
Caprinae	ANCESTRAL SPECIES																	ENSGT00950000182959.a.b.b.a.m #21
Rambouillet Sheep	MODERN SPECIES	19	GLIPR1 (ENSOARG00020002870)	KRR1 (ENSOARG00020002893)	PHLDA1 (ENSOARG00020002913)	ENSOARG00020002933	OSBPL8 (ENSOARG00020003030) #8	BBS10 (ENSOARG00020003354) #7	ENSOARG00020003381	ZDHHC17 (ENSOARG00020003403) #9	CSRP2 (ENSOARG00020003468) #10	E2F7 (ENSOARG00020003529) #12	NAV3 (ENSOARG00020003813) #14	SYT1 (ENSOARG00020005626) #16	PAWR (ENSOARG00020005665) #17	PPP1R12A (ENSOARG00020005817) #18	PTPRQ (ENSOARG00020008080) #20	MYF6 (ENSOARG00020008943) #21	MYF6 (ENSOARG00020008989) #21	MYF5 (ENSOARG00020009026) #22	LIN7A (ENSOARG00020009053) #23	ACSS3 (ENSOARG00020009124) #24	PPFIA2 (ENSOARG00020009934) #25	CCDC59 (ENSOARG00020015621) #27	TMTC2 (ENSOARG00020015711) #29	SLC6A15 (ENSOARG00020007201) #30	TSPAN19 (ENSOARG00020007275)	ALX1 (ENSOARG00020007379) #31	RASSF9 (ENSOARG00020007430) #33	NTS (ENSOARG00020007471) #34	ENSOARG00020007547	MGAT4C (ENSOARG00020007579) #35	C12orf50 (ENSOARG00020007620) #36
Caprinae	ANCESTRAL SPECIES		ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.cb.b	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a.n #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000013187.b	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Rambouillet Sheep	MODERN SPECIES	19	KRR1 (ENSOARG00020002893)	PHLDA1 (ENSOARG00020002913)	ENSOARG00020002933	OSBPL8 (ENSOARG00020003030) #8	BBS10 (ENSOARG00020003354) #7	ENSOARG00020003381	ZDHHC17 (ENSOARG00020003403) #9	CSRP2 (ENSOARG00020003468) #10	E2F7 (ENSOARG00020003529) #12	NAV3 (ENSOARG00020003813) #14	SYT1 (ENSOARG00020005626) #16	PAWR (ENSOARG00020005665) #17	PPP1R12A (ENSOARG00020005817) #18	PTPRQ (ENSOARG00020008080) #20	MYF6 (ENSOARG00020008943) #21	MYF6 (ENSOARG00020008989) #21	MYF5 (ENSOARG00020009026) #22	LIN7A (ENSOARG00020009053) #23	ACSS3 (ENSOARG00020009124) #24	PPFIA2 (ENSOARG00020009934) #25	CCDC59 (ENSOARG00020015621) #27	TMTC2 (ENSOARG00020015711) #29	SLC6A15 (ENSOARG00020007201) #30	TSPAN19 (ENSOARG00020007275)	ALX1 (ENSOARG00020007379) #31	RASSF9 (ENSOARG00020007430) #33	NTS (ENSOARG00020007471) #34	ENSOARG00020007547	MGAT4C (ENSOARG00020007579) #35	C12orf50 (ENSOARG00020007620) #36	C3H12orf29 (ENSOARG00020007796) #37
Goat	MODERN SPECIES	24	PHLDA1 (ENSCHIG00000005054)	BBS10 (ENSCHIG00000016567) #7	OSBPL8 (ENSCHIG00000010416) #8	ZDHHC17 (ENSCHIG00000009471) #9	CSRP2 (ENSCHIG00000025767) #10	E2F7 (ENSCHIG00000023455) #12	ENSCHIG00000017418	ENSCHIG00000009714	NAV3 (ENSCHIG00000012255) #14	ENSCHIG00000020619	SYT1 (ENSCHIG00000027174) #16	PAWR (ENSCHIG00000014049) #17	PPP1R12A (ENSCHIG00000007263) #18	OTOGL (ENSCHIG00000001357) #19	PTPRQ (ENSCHIG00000026657) #20	MYF6 (ENSCHIG00000021667) #21	MYF5 (ENSCHIG00000015029) #22	LIN7A (ENSCHIG00000003123) #23	ACSS3 (ENSCHIG00000023281) #24	PPFIA2 (ENSCHIG00000022919) #25	ENSCHIG00000005384	ENSCHIG00000025817 #27	METTL25 (ENSCHIG00000003929) #28	TMTC2 (ENSCHIG00000021548) #29	SLC6A15 (ENSCHIG00000017725) #30	TSPAN19 (ENSCHIG00000013366)	LRRIQ1 (ENSCHIG00000027155)	ALX1 (ENSCHIG00000025423) #31	RASSF9 (ENSCHIG00000024146) #33	NTS (ENSCHIG00000015085) #34	MGAT4C (ENSCHIG00000026547) #35
Bovinae	ANCESTRAL SPECIES	17	ENSGT00940000153362.a.cb.b.b	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00390000012446.o.b	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000013187.b	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
American bison	MODERN SPECIES	3377											SYT1 (ENSBBBG00000005031) #16	PAWR (ENSBBBG00000006786) #17	PPP1R12A (ENSBBBG00000020255) #18	OTOGL (ENSBBBG00000020070) #19	PTPRQ (ENSBBBG00000005139) #20	MYF6 (ENSBBBG00000007672) #21	MYF5 (ENSBBBG00000005327) #22	LIN7A (ENSBBBG00000019615) #23	ACSS3 (ENSBBBG00000019602) #24	PPFIA2 (ENSBBBG00000006966) #25	ENSBBBG00000004945	CCDC59 (ENSBBBG00000019197) #27	METTL25 (ENSBBBG00000004939) #28	TMTC2 (ENSBBBG00000009162) #29	SLC6A15 (ENSBBBG00000004924) #30	TSPAN19 (ENSBBBG00000019123)	LRRIQ1 (ENSBBBG00000004903)	ALX1 (ENSBBBG00000004860) #31	RASSF9 (ENSBBBG00000019025) #33	NTS (ENSBBBG00000019020) #34	MGAT4C (ENSBBBG00000004848) #35
Bos	ANCESTRAL SPECIES	2	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.b.a.a.a.b	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00390000012446.o.b	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000003710.c.a.b.b	ENSGT00390000006546.i #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Bos_a	ANCESTRAL SPECIES	3	ENSGT00940000153362.a.cb.b.b	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.b.a.a.a.b	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00390000012446.o.b	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000168324	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.b.a.a.b.a.a.a	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000013187.b	ENSGT00390000003710.c.a.b.b	ENSGT00390000006546.i #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33
Wild yak	MODERN SPECIES	141																MYF6 (ENSBMUG00000012075) #21	MYF5 (ENSBMUG00000012079) #22	ENSBMUG00000012090 #23
Domestic yak	MODERN SPECIES	24	ZDHHC17 (ENSBGRG00000009471) #9	ENSBGRG00000009376 #10	E2F7 (ENSBGRG00000009145) #12	ENSBGRG00000009095	ENSBGRG00000009079	ENSBGRG00000009036	NAV3 (ENSBGRG00000007767) #14	SYT1 (ENSBGRG00000007621) #16	ENSBGRG00000007603	PAWR (ENSBGRG00000007479) #17	ENSBGRG00000007448	PPP1R12A (ENSBGRG00000006560) #18	OTOGL (ENSBGRG00000005461) #19	ENSBGRG00000005290	PTPRQ (ENSBGRG00000003831) #20	MYF6 (ENSBGRG00000003786) #21	MYF5 (ENSBGRG00000003759) #22	ENSBGRG00000003736	LIN7A (ENSBGRG00000003708) #23	ENSBGRG00000003689	ACSS3 (ENSBGRG00000003619) #24	ENSBGRG00000003602	ENSBGRG00000003592	PPFIA2 (ENSBGRG00000003359) #25	CCDC59 (ENSBGRG00000003316) #27	ENSBGRG00000003305	METTL25 (ENSBGRG00000003283) #28	ENSBGRG00000003272	TMTC2 (ENSBGRG00000003210) #29	ENSBGRG00000003173	ENSBGRG00000003156
Bos_b	ANCESTRAL SPECIES	4	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.b.a.a.a.b	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00390000012446.o.b	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT01030000234758.a.a.b.a.a.b.b.a.a	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000013187.b	ENSGT00390000006546.i #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00390000005003.k.b	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34
Cow	MODERN SPECIES	24	PHLDA1 (ENSBTAG00000034985)	BBS10 (ENSBTAG00000050467) #7	OSBPL8 (ENSBTAG00000004427) #8	ZDHHC17 (ENSBTAG00000021756) #9	CSRP2 (ENSBTAG00000013406) #10	E2F7 (ENSBTAG00000016931) #12	ENSBTAG00000054109	NAV3 (ENSBTAG00000009852) #14	ENSBTAG00000054695	SYT1 (ENSBTAG00000034693) #16	PAWR (ENSBTAG00000043949) #17	ENSBTAG00000048833	PPP1R12A (ENSBTAG00000014609) #18	OTOGL (ENSBTAG00000011336) #19	PTPRQ (ENSBTAG00000026977) #20	MYF6 (ENSBTAG00000014003) #21	MYF5 (ENSBTAG00000026972) #22	LIN7A (ENSBTAG00000011367) #23	ACSS3 (ENSBTAG00000018694) #24	PPFIA2 (ENSBTAG00000003036) #25	ENSBTAG00000053526	ENSBTAG00000052152	CCDC59 (ENSBTAG00000036282) #27	METTL25 (ENSBTAG00000008382) #28	TMTC2 (ENSBTAG00000002888) #29	ENSBTAG00000014765	SLC6A15 (ENSBTAG00000018432) #30	LRRIQ1 (ENSBTAG00000027900)	TSPAN19 (ENSBTAG00000047203)	ALX1 (ENSBTAG00000014977) #31	RASSF9 (ENSBTAG00000026966) #33
Hybrid Bos Indicus	MODERN SPECIES	24	BBS10 (ENSBIXG00005029298) #7	ENSBIXG00005029293	OSBPL8 (ENSBIXG00005007884) #8	ZDHHC17 (ENSBIXG00005000041) #9	CSRP2 (ENSBIXG00005007979) #10	E2F7 (ENSBIXG00005008016) #12	ENSBIXG00005008045	NAV3 (ENSBIXG00005000135) #14	ENSBIXG00005008283	SYT1 (ENSBIXG00005008356) #16	PAWR (ENSBIXG00005000179) #17	ENSBIXG00005000182	PPP1R12A (ENSBIXG00005000226) #18	OTOGL (ENSBIXG00005008900) #19	PTPRQ (ENSBIXG00005009087) #20	MYF6 (ENSBIXG00005009131) #21	MYF5 (ENSBIXG00005009143) #22	LIN7A (ENSBIXG00005009155) #23	ENSBIXG00005009169	ACSS3 (ENSBIXG00005009198) #24	ENSBIXG00005009217	ENSBIXG00005006705	PPFIA2 (ENSBIXG00005009447) #25	ENSBIXG00005009547 #27	ENSBIXG00005009553	METTL25 (ENSBIXG00005009587) #28	TMTC2 (ENSBIXG00005009679) #29	ENSBIXG00005000567	SLC6A15 (ENSBIXG00005009785) #30	TSPAN19 (ENSBIXG00005009801)	LRRIQ1 (ENSBIXG00005009865)
Laurasiatheria_b	ANCESTRAL SPECIES	6	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Carnivora	ANCESTRAL SPECIES	3	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Felidae	ANCESTRAL SPECIES	2	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Panthera	ANCESTRAL SPECIES		ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Tiger	MODERN SPECIES	285	GLIPR1L2 (ENSPTIG00000011160)	GLIPR1 (ENSPTIG00000010519)	KRR1 (ENSPTIG00000009202)	NAP1L1 (ENSPTIG00000003186)	BBS10 (ENSPTIG00000020383) #7	OSBPL8 (ENSPTIG00000019983) #8	ZDHHC17 (ENSPTIG00000019755) #9	CSRP2 (ENSPTIG00000019308) #10	E2F7 (ENSPTIG00000016920) #12	NAV3 (ENSPTIG00000013673) #14	SYT1 (ENSPTIG00000013094) #16	PAWR (ENSPTIG00000012722) #17	PPP1R12A (ENSPTIG00000003820) #18	OTOGL (ENSPTIG00000017536) #19	PTPRQ (ENSPTIG00000014182) #20	MYF6 (ENSPTIG00000014009) #21	MYF5 (ENSPTIG00000013849) #22	LIN7A (ENSPTIG00000013465) #23	ACSS3 (ENSPTIG00000013083) #24	PPFIA2 (ENSPTIG00000008257) #25
Panthera_a	ANCESTRAL SPECIES	12	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
lion	MODERN SPECIES	7	KRR1 (ENSPLOG00000001901)	PHLDA1 (ENSPLOG00000001933)	NAP1L1 (ENSPLOG00000001982)	BBS10 (ENSPLOG00000002053) #7	OSBPL8 (ENSPLOG00000002092) #8	ZDHHC17 (ENSPLOG00000002249) #9	CSRP2 (ENSPLOG00000002279) #10	E2F7 (ENSPLOG00000002314) #12	NAV3 (ENSPLOG00000002454) #14	ENSPLOG00000002650	SYT1 (ENSPLOG00000002662) #16	PAWR (ENSPLOG00000002686) #17	PPP1R12A (ENSPLOG00000002780) #18	OTOGL (ENSPLOG00000003151) #19	PTPRQ (ENSPLOG00000003543) #20	MYF6 (ENSPLOG00000003667) #21	MYF5 (ENSPLOG00000003675) #22	LIN7A (ENSPLOG00000003686) #23	ACSS3 (ENSPLOG00000003703) #24	PPFIA2 (ENSPLOG00000003973) #25	CCDC59 (ENSPLOG00000004335) #27	METTL25 (ENSPLOG00000004346) #28	TMTC2 (ENSPLOG00000004411) #29	SLC6A15 (ENSPLOG00000004444) #30	TSPAN19 (ENSPLOG00000004469)	ENSPLOG00000004490	ALX1 (ENSPLOG00000004563) #31	RASSF9 (ENSPLOG00000004571) #33	NTS (ENSPLOG00000004580) #34	MGAT4C (ENSPLOG00000004588) #35	ENSPLOG00000004594
leopard	MODERN SPECIES	27	NAP1L1 (ENSPPRG00000001906)	ENSPPRG00000000117	BBS10 (ENSPPRG00000022774) #7	OSBPL8 (ENSPPRG00000023047) #8	ENSPPRG00000023878	ZDHHC17 (ENSPPRG00000024071) #9	CSRP2 (ENSPPRG00000024205) #10	E2F7 (ENSPPRG00000024442) #12	NAV3 (ENSPPRG00000022007) #14	SYT1 (ENSPPRG00000014210) #16	PAWR (ENSPPRG00000013959) #17	ENSPPRG00000013642	PPP1R12A (ENSPPRG00000012756) #18	OTOGL (ENSPPRG00000007761) #19	PTPRQ (ENSPPRG00000005300) #20	MYF6 (ENSPPRG00000003909) #21	MYF5 (ENSPPRG00000003820) #22	LIN7A (ENSPPRG00000003439) #23	ACSS3 (ENSPPRG00000003248) #24	PPFIA2 (ENSPPRG00000001816) #25	ENSPPRG00000024977	CCDC59 (ENSPPRG00000022500) #27	METTL25 (ENSPPRG00000020885) #28	TMTC2 (ENSPPRG00000018820) #29
Cat	MODERN SPECIES	238	KRR1 (ENSFCAG00000025788)	ENSFCAG00000050261	PHLDA1 (ENSFCAG00000032023)	NAP1L1 (ENSFCAG00000000279)	OSBPL8 (ENSFCAG00000027470) #8	ZDHHC17 (ENSFCAG00000027034) #9	CSRP2 (ENSFCAG00000006548) #10	E2F7 (ENSFCAG00000010756) #12	NAV3 (ENSFCAG00000013128) #14	ENSFCAG00000048215	SYT1 (ENSFCAG00000024865) #16	PAWR (ENSFCAG00000026300) #17	PPP1R12A (ENSFCAG00000027965) #18	OTOGL (ENSFCAG00000022141) #19	PTPRQ (ENSFCAG00000026313) #20	MYF6 (ENSFCAG00000015010) #21	MYF5 (ENSFCAG00000015011) #22	LIN7A (ENSFCAG00000015014) #23	ACSS3 (ENSFCAG00000012992) #24	PPFIA2 (ENSFCAG00000012993) #25	CCDC59 (ENSFCAG00000028462) #27	METTL25 (ENSFCAG00000013377) #28	ENSFCAG00000035513	TMTC2 (ENSFCAG00000024338) #29	SLC6A15 (ENSFCAG00000029283) #30	TSPAN19 (ENSFCAG00000025693)	LRRIQ1 (ENSFCAG00000031743)	ALX1 (ENSFCAG00000034933) #31	RASSF9 (ENSFCAG00000006978) #33	NTS (ENSFCAG00000031116) #34	MGAT4C (ENSFCAG00000011896) #35
Caniformia	ANCESTRAL SPECIES	20	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Caniformia_b	ANCESTRAL SPECIES	18	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Ursidae	ANCESTRAL SPECIES	13	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Ursus	ANCESTRAL SPECIES	260												ENSGT00940000155394 #16	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25
American black bear	MODERN SPECIES	3995																MYF6 (ENSUAMG00000017169) #21	MYF5 (ENSUAMG00000017165) #22
Polar bear	MODERN SPECIES	410												SYT1 (ENSUMAG00000004449) #16	PPP1R12A (ENSUMAG00000004409) #18	OTOGL (ENSUMAG00000004235) #19	PTPRQ (ENSUMAG00000004116) #20	MYF6 (ENSUMAG00000004099) #21	MYF5 (ENSUMAG00000004083) #22	LIN7A (ENSUMAG00000004070) #23	ACSS3 (ENSUMAG00000003597) #24	PPFIA2 (ENSUMAG00000003393) #25
Giant Panda	MODERN SPECIES	6	KRR1 (ENSAMEG00000006437)	PHLDA1 (ENSAMEG00000006460)	NAP1L1 (ENSAMEG00000006463)	BBS10 (ENSAMEG00000006510) #7	OSBPL8 (ENSAMEG00000006513) #8	ZDHHC17 (ENSAMEG00000006600) #9	CSRP2 (ENSAMEG00000006632) #10	E2F7 (ENSAMEG00000007247) #12	ENSAMEG00000024301	NAV3 (ENSAMEG00000006673) #14	SYT1 (ENSAMEG00000013376) #16	PAWR (ENSAMEG00000013370) #17	PPP1R12A (ENSAMEG00000013280) #18	OTOGL (ENSAMEG00000013267) #19	PTPRQ (ENSAMEG00000013219) #20	MYF6 (ENSAMEG00000027013) #21	MYF5 (ENSAMEG00000013193) #22	LIN7A (ENSAMEG00000013191) #23	ACSS3 (ENSAMEG00000013162) #24	PPFIA2 (ENSAMEG00000013096) #25	CCDC59 (ENSAMEG00000016875) #27	METTL25 (ENSAMEG00000016877) #28	TMTC2 (ENSAMEG00000016881) #29	SLC6A15 (ENSAMEG00000009013) #30	TSPAN19 (ENSAMEG00000009009)	LRRIQ1 (ENSAMEG00000024972)	ALX1 (ENSAMEG00000009049) #31	RASSF9 (ENSAMEG00000006110) #33	NTS (ENSAMEG00000006112) #34	MGAT4C (ENSAMEG00000006123) #35	C12orf50 (ENSAMEG00000002419) #36
Mustelinae	ANCESTRAL SPECIES	4	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215.b.a #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Ferret	MODERN SPECIES	546														ENSMPUG00000004956 #20	ENSMPUG00000004951 #20	MYF6 (ENSMPUG00000004945) #21	MYF5 (ENSMPUG00000004935) #22	LIN7A (ENSMPUG00000004898) #23	ACSS3 (ENSMPUG00000004881) #24	ENSMPUG00000004817 #25
American mink	MODERN SPECIES	22	ENSNVIG00000003475	ENSNVIG00000003110	BBS10 (ENSNVIG00000003073) #7	OSBPL8 (ENSNVIG00000002847) #8	ZDHHC17 (ENSNVIG00000002801) #9	ENSNVIG00000002763 #10	E2F7 (ENSNVIG00000002695) #12	NAV3 (ENSNVIG00000002412) #14	ENSNVIG00000002371	SYT1 (ENSNVIG00000002313) #16	PAWR (ENSNVIG00000002283) #17	PPP1R12A (ENSNVIG00000001940) #18	ENSNVIG00000001919	OTOGL (ENSNVIG00000001579) #19	PTPRQ (ENSNVIG00000001320) #20	MYF6 (ENSNVIG00000001298) #21	MYF5 (ENSNVIG00000001283) #22	LIN7A (ENSNVIG00000001269) #23	ACSS3 (ENSNVIG00000001229) #24	PPFIA2 (ENSNVIG00000000848) #25	TAP26 (ENSNVIG00000000828) #27	METTL25 (ENSNVIG00000000819) #28	TMTC2 (ENSNVIG00000000786) #29	ENSNVIG00000000773	S6A15 (ENSNVIG00000000728) #30	TSN19 (ENSNVIG00000000703)	LRRIQ1 (ENSNVIG00000000618)	ALX1 (ENSNVIG00000000603) #31	RASSF9 (ENSNVIG00000000592) #33	NEUT (ENSNVIG00000000561) #34	MGT4C (ENSNVIG00000000536) #35
Canidae	ANCESTRAL SPECIES	12	ENSGT00390000005922.b.d.b.a.j	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT01090000260040.a.a.a.c.b	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Canis_lupus	ANCESTRAL SPECIES	16	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713.q #12	ENSGT00940000158890.p.a.f	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT01090000260040.a.a.a.c.b	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Dingo	MODERN SPECIES	277	BBS10 (ENSCAFG00020015335) #7	OSBPL8 (ENSCAFG00020015356) #8	ZDHHC17 (ENSCAFG00020015453) #9	CSRP2 (ENSCAFG00020015512) #10	ENSCAFG00020015518 #12	ENSCAFG00020015522 #12	ENSCAFG00020015528	ENSCAFG00020015535	NAV3 (ENSCAFG00020015546) #14	ENSCAFG00020015601	SYT1 (ENSCAFG00020015603) #16	PAWR (ENSCAFG00020015607) #17	PPP1R12A (ENSCAFG00020015626) #18	OTOGL (ENSCAFG00020015840) #19	PTPRQ (ENSCAFG00020015957) #20	MYF6 (ENSCAFG00020016005) #21	MYF5 (ENSCAFG00020016010) #22	LIN7A (ENSCAFG00020016013) #23	ACSS3 (ENSCAFG00020016033) #24	PPFIA2 (ENSCAFG00020016113) #25	CCDC59 (ENSCAFG00020016153) #27	METTL25 (ENSCAFG00020016154) #28	TMTC2 (ENSCAFG00020016159) #29	ENSCAFG00020016180	SLC6A15 (ENSCAFG00020016183) #30	TSPAN19 (ENSCAFG00020016187)	LRRIQ1 (ENSCAFG00020016192)	ALX1 (ENSCAFG00020016217) #31	RASSF9 (ENSCAFG00020016220) #33	ENSCAFG00020016221	NTS (ENSCAFG00020016223) #34
Dog	MODERN SPECIES	6	ENSCAFG00845006055	OSBPL8 (ENSCAFG00845006103) #7	OSBPL8 (ENSCAFG00845006249) #8	ZDHHC17 (ENSCAFG00845006644) #9	ENSCAFG00845006746 #10	E2F7 (ENSCAFG00845006897) #12	ENSCAFG00845007259	NAV3 (ENSCAFG00845007345) #14	SYT1 (ENSCAFG00845007651) #16	PAWR (ENSCAFG00845007786) #17	PPP1R12A (ENSCAFG00845007952) #18	ENSCAFG00845008317	ENSCAFG00845008343	OTOGL (ENSCAFG00845008423) #19	PTPRQ (ENSCAFG00845008887) #20	MYF6 (ENSCAFG00845009704) #21	ENSCAFG00845009734 #22	LIN7A (ENSCAFG00845009762) #23	ACSS3 (ENSCAFG00845009887) #24	PPFIA2 (ENSCAFG00845010311) #25	CCDC59 (ENSCAFG00845011151) #27	METTL25 (ENSCAFG00845011219) #28	TMTC2 (ENSCAFG00845011393) #29	SLC6A15 (ENSCAFG00845011599) #30	TSPAN19 (ENSCAFG00845011710)	LRRIQ1 (ENSCAFG00845011806)	ALX1 (ENSCAFG00845012248) #31	RASSF9 (ENSCAFG00845012311) #33	ENSCAFG00845012341	NTS (ENSCAFG00845012392) #34	MGAT4C (ENSCAFG00845012439) #35
Red fox	MODERN SPECIES	9	KRR1 (ENSVVUG00000009566)	ENSVVUG00000009581	NAP1L1 (ENSVVUG00000009610)	BBS10 (ENSVVUG00000009650) #7	OSBPL8 (ENSVVUG00000009692) #8	ZDHHC17 (ENSVVUG00000009811) #9	CSRP2 (ENSVVUG00000009828) #10	E2F7 (ENSVVUG00000009839) #12	NAV3 (ENSVVUG00000009882) #14	SYT1 (ENSVVUG00000009998) #16	PAWR (ENSVVUG00000010028) #17	PPP1R12A (ENSVVUG00000010043) #18	OTOGL (ENSVVUG00000010103) #19	ENSVVUG00000010366	PTPRQ (ENSVVUG00000010403) #20	MYF6 (ENSVVUG00000010529) #21	ENSVVUG00000010537 #22	LIN7A (ENSVVUG00000010554) #23	ACSS3 (ENSVVUG00000010570) #24	PPFIA2 (ENSVVUG00000010745) #25	ENSVVUG00000010950	CCDC59 (ENSVVUG00000010954) #27	METTL25 (ENSVVUG00000010971) #28	TMTC2 (ENSVVUG00000011020) #29	SLC6A15 (ENSVVUG00000011094) #30	ENSVVUG00000011115 #26	TSPAN19 (ENSVVUG00000011198)	LRRIQ1 (ENSVVUG00000011218)	ALX1 (ENSVVUG00000011346) #31	ENSVVUG00000011364	NTS (ENSVVUG00000011394) #34
Laurasiatheria_c	ANCESTRAL SPECIES	5	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Chiroptera	ANCESTRAL SPECIES	4	ENSGT00940000160727	ENSGT00390000018775	ENSGT00940000167051	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Megabat	MODERN SPECIES	899															ENSPVAG00000003333 #20	MYF6 (ENSPVAG00000003335) #21	MYF5 (ENSPVAG00000003336) #22	LIN7A (ENSPVAG00000003338) #23
Microchiroptera	ANCESTRAL SPECIES	2	ENSGT00940000160727	ENSGT00390000018775	ENSGT00940000167051	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Greater horseshoe bat	MODERN SPECIES	1	GLIPR1 (ENSRFEG00010004575)	ENSRFEG00010004593	ENSRFEG00010004601	NAP1L1 (ENSRFEG00010004645)	BBS10 (ENSRFEG00010004681) #7	OSBPL8 (ENSRFEG00010006253) #8	ZDHHC17 (ENSRFEG00010006316) #9	CSRP2 (ENSRFEG00010006389) #10	E2F7 (ENSRFEG00010006442) #12	NAV3 (ENSRFEG00010006668) #14	SYT1 (ENSRFEG00010007403) #16	PAWR (ENSRFEG00010007574) #17	PPP1R12A (ENSRFEG00010007686) #18	OTOGL (ENSRFEG00010007970) #19	PTPRQ (ENSRFEG00010009562) #20	MYF6 (ENSRFEG00010010368) #21	MYF5 (ENSRFEG00010010395) #22	LIN7A (ENSRFEG00010010463) #23	ACSS3 (ENSRFEG00010010509) #24	PPFIA2 (ENSRFEG00010011014) #25	CCDC59 (ENSRFEG00010014412) #27	METTL25 (ENSRFEG00010014462) #28	TMTC2 (ENSRFEG00010014525) #29	ENSRFEG00010014611	SLC6A15 (ENSRFEG00010014671) #30	TSPAN19 (ENSRFEG00010014831)	LRRIQ1 (ENSRFEG00010014978)	ALX1 (ENSRFEG00010015730) #31	RASSF9 (ENSRFEG00010015800) #33	NTS (ENSRFEG00010015856) #34	MGAT4C (ENSRFEG00010015934) #35
Microbat	MODERN SPECIES	946	NAP1L1 (ENSMLUG00000029307)	BBS10 (ENSMLUG00000001850) #7	OSBPL8 (ENSMLUG00000005046) #8	ENSMLUG00000029930	ENSMLUG00000003587	ZDHHC17 (ENSMLUG00000002375) #9	CSRP2 (ENSMLUG00000002384) #10	E2F7 (ENSMLUG00000012116) #12	NAV3 (ENSMLUG00000010374) #14	ENSMLUG00000027140	SYT1 (ENSMLUG00000005752) #16	ENSMLUG00000005757 #17	PPP1R12A (ENSMLUG00000005477) #18	OTOGL (ENSMLUG00000005553) #19	PTPRQ (ENSMLUG00000006091) #20	MYF6 (ENSMLUG00000004940) #21	MYF5 (ENSMLUG00000004943) #22	LIN7A (ENSMLUG00000001526) #23	ACSS3 (ENSMLUG00000001527) #24	PPFIA2 (ENSMLUG00000001537) #25	CCDC59 (ENSMLUG00000008071) #27	METTL25 (ENSMLUG00000008084) #28	TMTC2 (ENSMLUG00000010233) #29	SLC6A15 (ENSMLUG00000011461) #30	TSPAN19 (ENSMLUG00000030562)	ALX1 (ENSMLUG00000008586) #31	RASSF9 (ENSMLUG00000008746) #33	NTS (ENSMLUG00000008733) #34	ENSMLUG00000022318	MGAT4C (ENSMLUG00000012722) #35	LYNX1 (ENSMLUG00000028919)
Equus	ANCESTRAL SPECIES	21	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.cb #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Horse	MODERN SPECIES	20	KRR1 (ENSECAG00000017498)	ENSECAG00000001900	NAP1L1 (ENSECAG00000000066)	BBS10 (ENSECAG00000015525) #7	OSBPL8 (ENSECAG00000015542) #8	ENSECAG00000058140	ZDHHC17 (ENSECAG00000006626) #9	CSRP2 (ENSECAG00000015606) #10	E2F7 (ENSECAG00000017963) #12	NAV3 (ENSECAG00000000121) #14	SYT1 (ENSECAG00000012832) #16	PAWR (ENSECAG00000019505) #17	PPP1R12A (ENSECAG00000020406) #18	OTOGL (ENSECAG00000009954) #19	PTPRQ (ENSECAG00000013221) #20	MYF5 (ENSECAG00000020047) #21	LIN7A (ENSECAG00000002823) #23	ACSS3 (ENSECAG00000008242) #24	PPFIA2 (ENSECAG00000011682) #25	CCDC59 (ENSECAG00000010450) #27	METTL25 (ENSECAG00000010894) #28	TMTC2 (ENSECAG00000014638) #29	SLC6A15 (ENSECAG00000018897) #30	TSPAN19 (ENSECAG00000037294)	LRRIQ1 (ENSECAG00000007701)	ALX1 (ENSECAG00000008597) #31	RASSF9 (ENSECAG00000002601) #33	NTS (ENSECAG00000010879) #34	MGAT4C (ENSECAG00000011971) #35	C28H12orf50 (ENSECAG00000014376) #36	C28H12orf29 (ENSECAG00000019028) #37
Donkey	MODERN SPECIES	11	GLIPR1 (ENSEASG00005024066)	KRR1 (ENSEASG00005021952)	PHLDA1 (ENSEASG00005027836)	NAP1L1 (ENSEASG00005021946)	BBS10 (ENSEASG00005021945) #7	OSBPL8 (ENSEASG00005021942) #8	ZDHHC17 (ENSEASG00005021939) #9	ENSEASG00005021936 #10	E2F7 (ENSEASG00005021935) #12	NAV3 (ENSEASG00005021551) #14	SYT1 (ENSEASG00005021375) #16	PAWR (ENSEASG00005033077) #17	PPP1R12A (ENSEASG00005021353) #18	OTOGL (ENSEASG00005021304) #19	PTPRQ (ENSEASG00005021271) #20	MYF6 (ENSEASG00005021268) #21	MYF5 (ENSEASG00005021266) #22	LIN7A (ENSEASG00005021265) #23	ENSEASG00005024557	ACSS3 (ENSEASG00005021261) #24	PPFIA2 (ENSEASG00005021241) #25	ENSEASG00005011113	CCDC59 (ENSEASG00005021237) #27	METTL25 (ENSEASG00005021236) #28	TMTC2 (ENSEASG00005021228) #29	SLC6A15 (ENSEASG00005021226) #30	TSPAN19 (ENSEASG00005021223)	LRRIQ1 (ENSEASG00005021215)	ALX1 (ENSEASG00005021209) #31	RASSF9 (ENSEASG00005030833) #33	ENSEASG00005027182 #34
Euarchontoglires	ANCESTRAL SPECIES	6	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Tree shrew	MODERN SPECIES	370																MYF6 (ENSTBEG00000007822) #21	MYF5 (ENSTBEG00000008363) #22
Glires	ANCESTRAL SPECIES	4	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Lagomorpha	ANCESTRAL SPECIES	113	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Rabbit	MODERN SPECIES	15	ENSOCUG00000032449	ENSOCUG00000028124	ZDHHC17 (ENSOCUG00000010401) #9	ENSOCUG00000027238	ENSOCUG00000008330 #10	E2F7 (ENSOCUG00000004932) #12	ENSOCUG00000025947	NAV3 (ENSOCUG00000004936) #14	ENSOCUG00000005148	SYT1 (ENSOCUG00000014829) #16	PAWR (ENSOCUG00000013722) #17	PPP1R12A (ENSOCUG00000016701) #18	ENSOCUG00000037584	OTOGL (ENSOCUG00000014963) #19	PTPRQ (ENSOCUG00000011455) #20	MYF6 (ENSOCUG00000001457) #21	MYF5 (ENSOCUG00000025477) #22	LIN7A (ENSOCUG00000004203) #23	ACSS3 (ENSOCUG00000015752) #24	PPFIA2 (ENSOCUG00000015770) #25	ENSOCUG00000036764	CCDC59 (ENSOCUG00000017824) #27	METTL25 (ENSOCUG00000017825) #28	TMTC2 (ENSOCUG00000017847) #29	SLC6A15 (ENSOCUG00000014066) #30	TSPAN19 (ENSOCUG00000037319)	ENSOCUG00000034706	LRRIQ1 (ENSOCUG00000017527)	ALX1 (ENSOCUG00000009125) #31	ENSOCUG00000036577	RASSF9 (ENSOCUG00000017872) #33
Pika	MODERN SPECIES	1627															ENSOPRG00000008989 #20	MYF6 (ENSOPRG00000008999) #21	MYF5 (ENSOPRG00000009007) #22	LIN7A (ENSOPRG00000009017) #23
Rodentia	ANCESTRAL SPECIES	5	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Hystricomorpha	ANCESTRAL SPECIES	9	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Naked mole-rat female	MODERN SPECIES	8	ENSHGLG00000008641	ENSHGLG00000044176	ENSHGLG00000004489	ENSHGLG00000009233 #9	ENSHGLG00000008206 #10	E2F7 (ENSHGLG00000006491) #12	NAV3 (ENSHGLG00000012083) #14	ENSHGLG00000010015	ENSHGLG00000042592	SYT1 (ENSHGLG00000047548) #16	PAWR (ENSHGLG00000017940) #17	ENSHGLG00000036431	PPP1R12A (ENSHGLG00000014201) #18	OTOGL (ENSHGLG00000013295) #19	PTPRQ (ENSHGLG00000011762) #20	MYF6 (ENSHGLG00000003419) #21	MYF5 (ENSHGLG00000003654) #22	ENSHGLG00000003757 #23	ACSS3 (ENSHGLG00000004579) #24	PPFIA2 (ENSHGLG00000000429) #25	ENSHGLG00000036317	CCDC59 (ENSHGLG00000001711) #27	METTL25 (ENSHGLG00000038393) #28	TMTC2 (ENSHGLG00000000320) #29	ENSHGLG00000018244	ENSHGLG00000000758	ENSHGLG00000000965 #30	LRRIQ1 (ENSHGLG00000000302)	ALX1 (ENSHGLG00000000937) #31	ENSHGLG00000036253	RASSF9 (ENSHGLG00000034316) #33
Hystricomorpha_a	ANCESTRAL SPECIES	7	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Hystricomorpha_b	ANCESTRAL SPECIES	13	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Long-tailed chinchilla	MODERN SPECIES	112	PHLDA1 (ENSCLAG00000006934)	ENSCLAG00000005333	BBS10 (ENSCLAG00000007902) #7	OSBPL8 (ENSCLAG00000010204) #8	ENSCLAG00000017859	ZDHHC17 (ENSCLAG00000011124) #9	CSRP2 (ENSCLAG00000008899) #10	E2F7 (ENSCLAG00000007164) #12	NAV3 (ENSCLAG00000012036) #14	ENSCLAG00000005685	SYT1 (ENSCLAG00000004862) #16	PAWR (ENSCLAG00000008196) #17	PPP1R12A (ENSCLAG00000006399) #18	OTOGL (ENSCLAG00000006526) #19	PTPRQ (ENSCLAG00000012232) #20	MYF6 (ENSCLAG00000013875) #21	MYF5 (ENSCLAG00000014410) #22	ENSCLAG00000013764 #23	ACSS3 (ENSCLAG00000005808) #24	PPFIA2 (ENSCLAG00000008120) #25	CCDC59 (ENSCLAG00000015050) #27	METTL25 (ENSCLAG00000014989) #28	TMTC2 (ENSCLAG00000008519) #29	SLC6A15 (ENSCLAG00000009597) #30	LRRIQ1 (ENSCLAG00000007042)	ALX1 (ENSCLAG00000007151) #31	RASSF9 (ENSCLAG00000007610) #33	NTS (ENSCLAG00000007844) #34	MGAT4C (ENSCLAG00000008726) #35	C12orf50 (ENSCLAG00000006991) #36	C12orf29 (ENSCLAG00000004653) #37
Degu	MODERN SPECIES	45	BBS10 (ENSODEG00000007380) #7	OSBPL8 (ENSODEG00000007618) #8	ENSODEG00000007367	ZDHHC17 (ENSODEG00000010670) #9	CSRP2 (ENSODEG00000008449) #10	ENSODEG00000008575 #12	NAV3 (ENSODEG00000010398) #14	ENSODEG00000007970	SYT1 (ENSODEG00000008387) #16	ENSODEG00000007440	PAWR (ENSODEG00000008160) #17	ENSODEG00000019636	PPP1R12A (ENSODEG00000009363) #18	OTOGL (ENSODEG00000007895) #19	PTPRQ (ENSODEG00000007761) #20	MYF6 (ENSODEG00000007305) #21	MYF5 (ENSODEG00000007510) #22	LIN7A (ENSODEG00000007832) #23	ENSODEG00000019454	ACSS3 (ENSODEG00000007503) #24	PPFIA2 (ENSODEG00000007419) #25	CCDC59 (ENSODEG00000009427) #27	METTL25 (ENSODEG00000010203) #28	TMTC2 (ENSODEG00000007730) #29	ENSODEG00000009267	ENSODEG00000009875	SLC6A15 (ENSODEG00000007508) #30	ENSODEG00000007801	ALX1 (ENSODEG00000008008) #31	RASSF9 (ENSODEG00000008024) #33	NTS (ENSODEG00000008426) #34
Guinea pig	MODERN SPECIES	9	GLIPR1 (ENSCPOG00000014351)	KRR1 (ENSCPOG00000014353)	PHLDA1 (ENSCPOG00000003245)	NAP1L1 (ENSCPOG00000019420)	BBS10 (ENSCPOG00000038158) #7	OSBPL8 (ENSCPOG00000001130) #8	ZDHHC17 (ENSCPOG00000012534) #9	CSRP2 (ENSCPOG00000031460) #10	E2F7 (ENSCPOG00000007375) #12	NAV3 (ENSCPOG00000015431) #14	SYT1 (ENSCPOG00000002054) #16	PAWR (ENSCPOG00000002469) #17	PPP1R12A (ENSCPOG00000004019) #18	OTOGL (ENSCPOG00000022231) #19	PTPRQ (ENSCPOG00000031105) #20	MYF6 (ENSCPOG00000030745) #21	MYF5 (ENSCPOG00000007766) #22	LIN7A (ENSCPOG00000001373) #23	ACSS3 (ENSCPOG00000003451) #24	PPFIA2 (ENSCPOG00000003459) #25	CCDC59 (ENSCPOG00000036718) #27	METTL25 (ENSCPOG00000011621) #28	TMTC2 (ENSCPOG00000005425) #29	SLC6A15 (ENSCPOG00000003103) #30	ENSCPOG00000022026	ALX1 (ENSCPOG00000027131) #31	ENSCPOG00000040399	RASSF9 (ENSCPOG00000030989) #33	NTS (ENSCPOG00000006576) #34	MGAT4C (ENSCPOG00000013992) #35	C12orf50 (ENSCPOG00000012468) #36
Sciuridae	ANCESTRAL SPECIES	14	ENSGT00390000018775.ab	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Marmotini	ANCESTRAL SPECIES	4	ENSGT00940000160727	ENSGT00390000018775.ab	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00390000009130.a.a.b.h
Marmotini_b	ANCESTRAL SPECIES	3	ENSGT00940000160727	ENSGT00390000018775.ab	ENSGT00440000039564.b	ENSGT00940000153362.a.hb.b	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00390000009130.a.a.b.h
Arctic ground squirrel	MODERN SPECIES	89															PTPRQ (ENSUPAG00010013494) #20	MYF6 (ENSUPAG00010013483) #21	MYF5 (ENSUPAG00010013472) #22	LIN7A (ENSUPAG00010013458) #23	ACSS3 (ENSUPAG00010013440) #24	PPFIA2 (ENSUPAG00010013381) #25	CCDC59 (ENSUPAG00010013356) #27	METTL25 (ENSUPAG00010013340) #28	TMTC2 (ENSUPAG00010013331) #29	ENSUPAG00010013316	SLC6A15 (ENSUPAG00010013281) #30	TSPAN19 (ENSUPAG00010013269)	ENSUPAG00010013204	ALX1 (ENSUPAG00010013178) #31	RASSF9 (ENSUPAG00010013163) #33	NTS (ENSUPAG00010013159) #34	MGAT4C (ENSUPAG00010013143) #35
Squirrel	MODERN SPECIES	298											SYT1 (ENSSTOG00000022817) #16	PAWR (ENSSTOG00000015765) #17	PPP1R12A (ENSSTOG00000011329) #18	OTOGL (ENSSTOG00000019523) #19	PTPRQ (ENSSTOG00000024058) #20	MYF6 (ENSSTOG00000015808) #21	MYF5 (ENSSTOG00000015810) #22	LIN7A (ENSSTOG00000015812) #23	ACSS3 (ENSSTOG00000013956) #24	PPFIA2 (ENSSTOG00000013971) #25
Alpin marmot	MODERN SPECIES	11	GLIPR1L2 (ENSMMMG00000002582)	GLIPR1 (ENSMMMG00000002546)	KRR1 (ENSMMMG00000002493)	PHLDA1 (ENSMMMG00000002474)	ENSMMMG00000002289	BBS10 (ENSMMMG00000002273) #7	OSBPL8 (ENSMMMG00000002240) #8	ZDHHC17 (ENSMMMG00000002185) #9	ENSMMMG00000002164 #10	E2F7 (ENSMMMG00000002119) #12	NAV3 (ENSMMMG00000002035) #14	SYT1 (ENSMMMG00000001991) #16	PPP1R12A (ENSMMMG00000001751) #18	OTOGL (ENSMMMG00000001599) #19	PTPRQ (ENSMMMG00000001485) #20	MYF6 (ENSMMMG00000001463) #21	MYF5 (ENSMMMG00000001446) #22	LIN7A (ENSMMMG00000001429) #23	ACSS3 (ENSMMMG00000001391) #24	PPFIA2 (ENSMMMG00000001244) #25	CCDC59 (ENSMMMG00000001213) #27	METTL25 (ENSMMMG00000001158) #28	TMTC2 (ENSMMMG00000001120) #29	ENSMMMG00000001090	SLC6A15 (ENSMMMG00000001050) #30	TSPAN19 (ENSMMMG00000001031)	LRRIQ1 (ENSMMMG00000000979)	ALX1 (ENSMMMG00000000949) #31	NTS (ENSMMMG00000000924) #34	MGAT4C (ENSMMMG00000000872) #35	ENSMMMG00000000843
Eurasian red squirrel	MODERN SPECIES	14	ENSSVLG00005023108	NAP1L1 (ENSSVLG00005023160)	BBS10 (ENSSVLG00005023257) #7	ENSSVLG00005023266	OSBPL8 (ENSSVLG00005023307) #8	ZDHHC17 (ENSSVLG00005023480) #9	ENSSVLG00005023521 #10	E2F7 (ENSSVLG00005023615) #12	ENSSVLG00005023728	NAV3 (ENSSVLG00005023837) #14	SYT1 (ENSSVLG00005024299) #16	PAWR (ENSSVLG00005024360) #17	PPP1R12A (ENSSVLG00005024407) #18	OTOGL (ENSSVLG00005024601) #19	PTPRQ (ENSSVLG00005025041) #20	MYF6 (ENSSVLG00005025222) #21	MYF5 (ENSSVLG00005025239) #22	LIN7A (ENSSVLG00005025250) #23	BLVRB (ENSSVLG00005025266)	ACSS3 (ENSSVLG00005000239) #24	PPFIA2 (ENSSVLG00005001201) #25	CCDC59 (ENSSVLG00005002316) #27	METTL25 (ENSSVLG00005002343) #28	TMTC2 (ENSSVLG00005002395) #29	SLC6A15 (ENSSVLG00005002476) #30	TSPAN19 (ENSSVLG00005002560)	LRRIQ1 (ENSSVLG00005002609)	ALX1 (ENSSVLG00005002747) #31	RASSF9 (ENSSVLG00005002780) #33	NTS (ENSSVLG00005002800) #34	MGAT4C (ENSSVLG00005002827) #35
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Kangaroo rat	MODERN SPECIES	322	ENSDORG00000004614	ENSDORG00000023399	Phlda1 (ENSDORG00000027757)	Nap1l1 (ENSDORG00000029138)	Bbs10 (ENSDORG00000000668) #7	Osbpl8 (ENSDORG00000000670) #8	Zdhhc17 (ENSDORG00000012435) #9	Csrp2 (ENSDORG00000012441) #10	ENSDORG00000026154 #12	Nav3 (ENSDORG00000011080) #14	Syt1 (ENSDORG00000003724) #16	Pawr (ENSDORG00000029489) #17	Ppp1r12a (ENSDORG00000007157) #18	Otogl (ENSDORG00000028677) #19	Ptprq (ENSDORG00000023208) #20	Myf6 (ENSDORG00000015435) #21	Myf5 (ENSDORG00000015437) #22	Lin7a (ENSDORG00000014355) #23	Acss3 (ENSDORG00000007288) #24	Ppfia2 (ENSDORG00000007289) #25	Mettl25 (ENSDORG00000003006) #28	Tmtc2 (ENSDORG00000005875) #29	Slc6a15 (ENSDORG00000000388) #30	ENSDORG00000008703	ENSDORG00000011012	Alx1 (ENSDORG00000011021) #31	Rassf9 (ENSDORG00000029782) #33	Nts (ENSDORG00000016284) #34	Mgat4c (ENSDORG00000025545) #35	1700017N19Rik (ENSDORG00000015892) #36	4930430F08Rik (ENSDORG00000015893) #37
Myomorpha	ANCESTRAL SPECIES	2	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Lesser Egyptian jerboa	MODERN SPECIES	42	ENSJJAG00000024142	Bbs10 (ENSJJAG00000023405) #7	Osbpl8 (ENSJJAG00000024252) #8	ENSJJAG00000011419 #9	ENSJJAG00000014135 #10	ENSJJAG00000005723 #11	E2f7 (ENSJJAG00000007878) #12	ENSJJAG00000010552 #13	Nav3 (ENSJJAG00000012332) #14	ENSJJAG00000022372 #15	Syt1 (ENSJJAG00000023399) #16	Pawr (ENSJJAG00000018666) #17	Ppp1r12a (ENSJJAG00000023796) #18	Otogl (ENSJJAG00000019493) #19	Ptprq (ENSJJAG00000017741) #20	Myf6 (ENSJJAG00000011250) #21	Myf5 (ENSJJAG00000003407) #22	Lin7a (ENSJJAG00000023503) #23	Acss3 (ENSJJAG00000008308) #24	Ppfia2 (ENSJJAG00000006298) #25	ENSJJAG00000003779 #26	Ccdc59 (ENSJJAG00000015263) #27	Mettl25 (ENSJJAG00000023860) #28	Tmtc2 (ENSJJAG00000016641) #29	Slc6a15 (ENSJJAG00000006373) #30	Alx1 (ENSJJAG00000006817) #31	ENSJJAG00000002806 #32	Rassf9 (ENSJJAG00000013251) #33	Nts (ENSJJAG00000014653) #34	Mgat4c (ENSJJAG00000021989) #35	1700017N19Rik (ENSJJAG00000023823) #36
Muroidea	ANCESTRAL SPECIES	5	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Muroidea_A	ANCESTRAL SPECIES	22	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Cricetidae	ANCESTRAL SPECIES	21	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Cricetinae	ANCESTRAL SPECIES	22	ENSGT00940000167051	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Golden Hamster	MODERN SPECIES	628	Krr1 (ENSMAUG00000021283)	ENSMAUG00000021584	Nap1l1 (ENSMAUG00000016700)	Bbs10 (ENSMAUG00000018240) #7	Osbpl8 (ENSMAUG00000022092) #8	Zdhhc17 (ENSMAUG00000021687) #9	Csrp2 (ENSMAUG00000018727) #10	E2f7 (ENSMAUG00000010792) #12	Nav3 (ENSMAUG00000012505) #14	ENSMAUG00000014224	Syt1 (ENSMAUG00000012263) #16	ENSMAUG00000008984	Ppp1r12a (ENSMAUG00000021712) #18	Otogl (ENSMAUG00000009930) #19	Ptprq (ENSMAUG00000014282) #20	Myf6 (ENSMAUG00000019329) #21	Myf5 (ENSMAUG00000000933) #22	Lin7a (ENSMAUG00000007088) #23	Acss3 (ENSMAUG00000014131) #24	ENSMAUG00000019031	Ppfia2 (ENSMAUG00000021622) #25	Ccdc59 (ENSMAUG00000017516) #27	Mettl25 (ENSMAUG00000020950) #28	Tmtc2 (ENSMAUG00000015691) #29	Slc6a15 (ENSMAUG00000018360) #30	ENSMAUG00000001372	Alx1 (ENSMAUG00000015563) #31	Rassf9 (ENSMAUG00000012420) #33	Nts (ENSMAUG00000013146) #34	ENSMAUG00000004735 #35	ENSMAUG00000008756 #36
Chinese hamster chok1gshd	MODERN SPECIES	83	Bbs10 (ENSCGRG00001010466) #7	Osbpl8 (ENSCGRG00001021286) #8	Zdhhc17 (ENSCGRG00001007660) #9	Csrp2 (ENSCGRG00001000844) #10	E2f7 (ENSCGRG00001006568) #12	ENSCGRG00001011762	Nav3 (ENSCGRG00001022037) #14	Brcc3dc (ENSCGRG00001009076)	Syt1 (ENSCGRG00001000069) #16	ENSCGRG00001010398	ENSCGRG00001009057	Pawr (ENSCGRG00001011044) #17	Ppp1r12a (ENSCGRG00001017263) #18	Otogl (ENSCGRG00001018530) #19	Ptprq (ENSCGRG00001017128) #20	Myf6 (ENSCGRG00001006341) #21	Myf5 (ENSCGRG00001009370) #22	Lin7a (ENSCGRG00001003313) #23	Acss3 (ENSCGRG00001009906) #24	Ppfia2 (ENSCGRG00001020914) #25	ENSCGRG00001016413 #28	Syn3 (ENSCGRG00001000589)	Timp3 (ENSCGRG00001016875)	Fbxo7 (ENSCGRG00001019488)	Bpifc (ENSCGRG00001023438)	Rtcb (ENSCGRG00001011173)	Ascl4 (ENSCGRG00001008661)	ENSCGRG00001015102	Pwp1 (ENSCGRG00001019668)	Abtb3 (ENSCGRG00001021266)	Cry1 (ENSCGRG00001001431)
Cricetidae_B	ANCESTRAL SPECIES	29	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Prairie vole	MODERN SPECIES	10	Krr1 (ENSMOCG00000018635)	Phlda1 (ENSMOCG00000021889)	Nap1l1 (ENSMOCG00000012136)	Bbs10 (ENSMOCG00000020010) #7	Osbpl8 (ENSMOCG00000016633) #8	Zdhhc17 (ENSMOCG00000002407) #9	Csrp2 (ENSMOCG00000007217) #10	E2f7 (ENSMOCG00000021130) #12	Nav3 (ENSMOCG00000018391) #14	ENSMOCG00000020523	Syt1 (ENSMOCG00000012503) #16	Pawr (ENSMOCG00000019570) #17	Ppp1r12a (ENSMOCG00000018418) #18	Otogl (ENSMOCG00000018409) #19	Ptprq (ENSMOCG00000017842) #20	Myf6 (ENSMOCG00000015833) #21	Myf5 (ENSMOCG00000017847) #22	Lin7a (ENSMOCG00000021369) #23	Acss3 (ENSMOCG00000012086) #24	Ppfia2 (ENSMOCG00000007873) #25	Ccdc59 (ENSMOCG00000006690) #27	Mettl25 (ENSMOCG00000018000) #28	Tmtc2 (ENSMOCG00000012479) #29	ENSMOCG00000016887	ENSMOCG00000010194	Slc6a15 (ENSMOCG00000002838) #30	ENSMOCG00000019991	Alx1 (ENSMOCG00000007046) #31	Rassf9 (ENSMOCG00000010972) #33	Nts (ENSMOCG00000000690) #34	Mgat4c (ENSMOCG00000012409) #35
Northern American deer mouse	MODERN SPECIES	9	Krr1 (ENSPEMG00000020228)	Phlda1 (ENSPEMG00000020277)	Nap1l1 (ENSPEMG00000000646)	Bbs10 (ENSPEMG00000031116) #7	Osbpl8 (ENSPEMG00000008934) #8	Zdhhc17 (ENSPEMG00000011257) #9	Csrp2 (ENSPEMG00000012653) #10	E2f7 (ENSPEMG00000013555) #12	Nav3 (ENSPEMG00000003783) #14	Brcc3dc (ENSPEMG00000012864)	Syt1 (ENSPEMG00000011853) #16	Pawr (ENSPEMG00000031267) #17	Ppp1r12a (ENSPEMG00000011824) #18	Otogl (ENSPEMG00000005921) #19	Ptprq (ENSPEMG00000019976) #20	Myf6 (ENSPEMG00000019751) #21	Myf5 (ENSPEMG00000018818) #22	Lin7a (ENSPEMG00000018576) #23	Acss3 (ENSPEMG00000017696) #24	Ppfia2 (ENSPEMG00000015993) #25	Ccdc59 (ENSPEMG00000031144) #27	Mettl25 (ENSPEMG00000013112) #28	Tmtc2 (ENSPEMG00000020725) #29	Mgat4c (ENSPEMG00000019377) #35	Nts (ENSPEMG00000024525) #34	Rassf9 (ENSPEMG00000012691) #33	Alx1 (ENSPEMG00000011110) #31	Lrriq1 (ENSPEMG00000012353)	Slc6a15 (ENSPEMG00000010154) #30	1700017N19Rik (ENSPEMG00000010447) #36	4930430F08Rik (ENSPEMG00000016254) #37
Murinae	ANCESTRAL SPECIES	22	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Mus	ANCESTRAL SPECIES	23	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Mus_A	ANCESTRAL SPECIES	11	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Ryukyu mouse	MODERN SPECIES	1	Glipr1 (MGP_CAROLIEiJ_G0015801)	Krr1 (MGP_CAROLIEiJ_G0015800)	Phlda1 (MGP_CAROLIEiJ_G0015799)	Nap1l1 (MGP_CAROLIEiJ_G0015798)	Bbs10 (MGP_CAROLIEiJ_G0015797) #7	Osbpl8 (MGP_CAROLIEiJ_G0015796) #8	Zdhhc17 (MGP_CAROLIEiJ_G0015795) #9	Csrp2 (MGP_CAROLIEiJ_G0015794) #10	E2f7 (MGP_CAROLIEiJ_G0015793) #12	Nav3 (MGP_CAROLIEiJ_G0015792) #14	Syt1 (MGP_CAROLIEiJ_G0015791) #16	MGP_CAROLIEiJ_G0015790 #17	Ppp1r12a (MGP_CAROLIEiJ_G0015789) #18	Otogl (MGP_CAROLIEiJ_G0015788) #19	Ptprq (MGP_CAROLIEiJ_G0015787) #20	Myf6 (MGP_CAROLIEiJ_G0015786) #21	Myf5 (MGP_CAROLIEiJ_G0015785) #22	Lin7a (MGP_CAROLIEiJ_G0015784) #23	Acss3 (MGP_CAROLIEiJ_G0015783) #24	Ppfia2 (MGP_CAROLIEiJ_G0015782) #25	Ccdc59 (MGP_CAROLIEiJ_G0015781) #27	Mettl25 (MGP_CAROLIEiJ_G0015780) #28	Tmtc2 (MGP_CAROLIEiJ_G0015779) #29	Slc6a15 (MGP_CAROLIEiJ_G0015778) #30	MGP_CAROLIEiJ_G0015777	Alx1 (MGP_CAROLIEiJ_G0015776) #31	Rassf9 (MGP_CAROLIEiJ_G0015775) #33	Nts (MGP_CAROLIEiJ_G0015774) #34	Mgat4c (MGP_CAROLIEiJ_G0015773) #35	1700017N19Rik (MGP_CAROLIEiJ_G0015772) #36	4930430F08Rik (MGP_CAROLIEiJ_G0015771) #37
Mus_B	ANCESTRAL SPECIES	10	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00390000000360.r.b.a.b	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Mouse	MODERN SPECIES	1	Krr1 (ENSMUSG00000063334)	Phlda1 (ENSMUSG00000020205)	Nap1l1 (ENSMUSG00000058799)	Bbs10 (ENSMUSG00000035759) #7	Osbpl8 (ENSMUSG00000020189) #8	Zdhhc17 (ENSMUSG00000035798) #9	Csrp2 (ENSMUSG00000020186) #10	E2f7 (ENSMUSG00000020185) #12	Nav3 (ENSMUSG00000020181) #14	Brcc3dc (ENSMUSG00000112039)	Syt1 (ENSMUSG00000035864) #16	Pawr (ENSMUSG00000035873) #17	Ppp1r12a (ENSMUSG00000019907) #18	Otogl (ENSMUSG00000091455) #19	Ptprq (ENSMUSG00000035916) #20	Myf6 (ENSMUSG00000035923) #21	Myf5 (ENSMUSG00000000435) #22	Lin7a (ENSMUSG00000019906) #23	Acss3 (ENSMUSG00000035948) #24	Ppfia2 (ENSMUSG00000053825) #25	Ccdc59 (ENSMUSG00000019897) #27	Mettl25 (ENSMUSG00000036009) #28	Tmtc2 (ENSMUSG00000036019) #29	Gm4340 (ENSMUSG00000090854)	Gm20765 (ENSMUSG00000095022)	Gm21312 (ENSMUSG00000094144)	Gm21304 (ENSMUSG00000097550)	Gm8764 (ENSMUSG00000097878)	Gm6763 (ENSMUSG00000097427)	Gm21293 (ENSMUSG00000091779)	Slc6a15 (ENSMUSG00000019894) #30
Mus_C	ANCESTRAL SPECIES	7	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Steppe mouse	MODERN SPECIES	3222								Nav3 (ENSMSIG00000028730) #14	Syt1 (ENSMSIG00000028850) #16	Pawr (ENSMSIG00000028867) #17	Ppp1r12a (ENSMSIG00000028882) #18	ENSMSIG00000029031	ENSMSIG00000029033	Otogl (ENSMSIG00000029034) #19	Ptprq (ENSMSIG00000029070) #20	Myf6 (ENSMSIG00000029104) #21	Myf5 (ENSMSIG00000029106) #22
spretus	MODERN SPECIES	1	Glipr1 (MGP_SPRETEiJ_G0016623)	Krr1 (MGP_SPRETEiJ_G0016622)	Phlda1 (MGP_SPRETEiJ_G0016621)	Nap1l1 (MGP_SPRETEiJ_G0016620)	Bbs10 (MGP_SPRETEiJ_G0016619) #7	Osbpl8 (MGP_SPRETEiJ_G0016618) #8	Zdhhc17 (MGP_SPRETEiJ_G0016617) #9	Csrp2 (MGP_SPRETEiJ_G0016616) #10	E2f7 (MGP_SPRETEiJ_G0016615) #12	Nav3 (MGP_SPRETEiJ_G0016614) #14	Syt1 (MGP_SPRETEiJ_G0016613) #16	Pawr (MGP_SPRETEiJ_G0016612) #17	Ppp1r12a (MGP_SPRETEiJ_G0016611) #18	Otogl (MGP_SPRETEiJ_G0016610) #19	Ptprq (MGP_SPRETEiJ_G0016609) #20	Myf6 (MGP_SPRETEiJ_G0016608) #21	Myf5 (MGP_SPRETEiJ_G0016607) #22	Lin7a (MGP_SPRETEiJ_G0016606) #23	Acss3 (MGP_SPRETEiJ_G0016605) #24	Ppfia2 (MGP_SPRETEiJ_G0016604) #25	Ccdc59 (MGP_SPRETEiJ_G0016603) #27	Mettl25 (MGP_SPRETEiJ_G0016602) #28	Tmtc2 (MGP_SPRETEiJ_G0016601) #29	Slc6a15 (MGP_SPRETEiJ_G0016600) #30	MGP_SPRETEiJ_G0016599	Alx1 (MGP_SPRETEiJ_G0016598) #31	Rassf9 (MGP_SPRETEiJ_G0016597) #33	Nts (MGP_SPRETEiJ_G0016596) #34	Mgat4c (MGP_SPRETEiJ_G0016595) #35	1700017N19Rik (MGP_SPRETEiJ_G0016594) #36	4930430F08Rik (MGP_SPRETEiJ_G0016593) #37
Shrew mouse	MODERN SPECIES	22	Glipr1 (MGP_PahariEiJ_G0031286)	Krr1 (MGP_PahariEiJ_G0031287)	Phlda1 (MGP_PahariEiJ_G0031288)	MGP_PahariEiJ_G0031289	Bbs10 (MGP_PahariEiJ_G0031290) #7	Osbpl8 (MGP_PahariEiJ_G0031291) #8	Zdhhc17 (MGP_PahariEiJ_G0031292) #9	Csrp2 (MGP_PahariEiJ_G0031293) #10	E2f7 (MGP_PahariEiJ_G0031294) #12	MGP_PahariEiJ_G0031295 #14	Syt1 (MGP_PahariEiJ_G0031296) #16	Pawr (MGP_PahariEiJ_G0031297) #17	Ppp1r12a (MGP_PahariEiJ_G0031298) #18	MGP_PahariEiJ_G0031299 #19	Ptprq (MGP_PahariEiJ_G0031300) #20	Myf6 (MGP_PahariEiJ_G0031301) #21	Myf5 (MGP_PahariEiJ_G0031302) #22	Lin7a (MGP_PahariEiJ_G0031303) #23	Acss3 (MGP_PahariEiJ_G0031304) #24	Ppfia2 (MGP_PahariEiJ_G0031305) #25	Ccdc59 (MGP_PahariEiJ_G0031306) #27	Mettl25 (MGP_PahariEiJ_G0031307) #28	Tmtc2 (MGP_PahariEiJ_G0031308) #29	Slc6a15 (MGP_PahariEiJ_G0031309) #30	MGP_PahariEiJ_G0031310	Alx1 (MGP_PahariEiJ_G0031311) #31	Rassf9 (MGP_PahariEiJ_G0031312) #33	Nts (MGP_PahariEiJ_G0031313) #34	Mgat4c (MGP_PahariEiJ_G0031314) #35	1700017N19Rik (MGP_PahariEiJ_G0031315) #36	4930430F08Rik (MGP_PahariEiJ_G0031316) #37
Rat	MODERN SPECIES	17	Phlda1 (ENSRNOG00000004019)	Nap1l1 (ENSRNOG00000003890)	Bbs10 (ENSRNOG00000026913) #7	ENSRNOG00000062798	Osbpl8 (ENSRNOG00000026962) #8	Zdhhc17 (ENSRNOG00000003803) #9	Csrp2 (ENSRNOG00000003772) #10	E2f7 (ENSRNOG00000026252) #12	Nav3 (ENSRNOG00000052157) #14	Brcc3dc (ENSRNOG00000070196)	Syt1 (ENSRNOG00000006426) #16	Pawr (ENSRNOG00000005917) #17	Ppp1r12a (ENSRNOG00000004925) #18	Otogl (ENSRNOG00000030316) #19	Ptprq (ENSRNOG00000056915) #20	Myf6 (ENSRNOG00000004878) #21	Myf5 (ENSRNOG00000004768) #22	Lin7a (ENSRNOG00000004527) #23	Acss3 (ENSRNOG00000004448) #24	Ppfia2 (ENSRNOG00000004353) #25	ENSRNOG00000063471	Ccdc59 (ENSRNOG00000004183) #27	Mettl25 (ENSRNOG00000027451) #28	Tmtc2 (ENSRNOG00000004585) #29	Slc6a15 (ENSRNOG00000027468) #30	Lrriq1 (ENSRNOG00000004564)	Alx1 (ENSRNOG00000004390) #31	Rassf9 (ENSRNOG00000038574) #33	Nts (ENSRNOG00000004179) #34	Mgat4c (ENSRNOG00000004149) #35	AABR07056845.1 (ENSRNOG00000023762)
Upper Galilee mountains blind mole rat	MODERN SPECIES	494	ENSNGAG00000022884	ENSNGAG00000014133	Bbs10 (ENSNGAG00000022298) #7	Osbpl8 (ENSNGAG00000014231) #8	Zdhhc17 (ENSNGAG00000009049) #9	ENSNGAG00000023257 #10	E2f7 (ENSNGAG00000023644) #12	ENSNGAG00000024182	Nav3 (ENSNGAG00000024210) #14	Syt1 (ENSNGAG00000020988) #16	Pawr (ENSNGAG00000015922) #17	Ppp1r12a (ENSNGAG00000023300) #18	ENSNGAG00000024231	Otogl (ENSNGAG00000022483) #19	Ptprq (ENSNGAG00000024172) #20	Myf6 (ENSNGAG00000023390) #21	Myf5 (ENSNGAG00000003539) #22	Lin7a (ENSNGAG00000022827) #23	Acss3 (ENSNGAG00000015078) #24	Ppfia2 (ENSNGAG00000022807) #25	ENSNGAG00000012599	Ccdc59 (ENSNGAG00000023637) #27	Mettl25 (ENSNGAG00000016246) #28	Tmtc2 (ENSNGAG00000023652) #29
Primates	ANCESTRAL SPECIES	6	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Strepsirrhini	ANCESTRAL SPECIES	3	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394.b #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Lemuriformes	ANCESTRAL SPECIES	1	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394.b #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Mouse lemur	MODERN SPECIES	29	NAP1L1 (ENSMICG00000006036)	BBS10 (ENSMICG00000042947) #7	OSBPL8 (ENSMICG00000000969) #8	ENSMICG00000029525	ZDHHC17 (ENSMICG00000033453) #9	CSRP2 (ENSMICG00000047076) #10	ENSMICG00000014368	E2F7 (ENSMICG00000013872) #12	NAV3 (ENSMICG00000003403) #14	SYT1 (ENSMICG00000015517) #16	PAWR (ENSMICG00000031649) #17	ENSMICG00000032513	PPP1R12A (ENSMICG00000032335) #18	OTOGL (ENSMICG00000026871) #19	PTPRQ (ENSMICG00000038737) #20	MYF6 (ENSMICG00000004274) #21	MYF5 (ENSMICG00000036139) #22	LIN7A (ENSMICG00000033894) #23	ACSS3 (ENSMICG00000010809) #24	PPFIA2 (ENSMICG00000010822) #25	CCDC59 (ENSMICG00000041747) #27	METTL25 (ENSMICG00000027175) #28	TMTC2 (ENSMICG00000031682) #29	SLC6A15 (ENSMICG00000026324) #30	TSPAN19 (ENSMICG00000038361)	LRRIQ1 (ENSMICG00000037929)	ALX1 (ENSMICG00000032710) #31	RASSF9 (ENSMICG00000042014) #33	NTS (ENSMICG00000037863) #34	MGAT4C (ENSMICG00000037297) #35	ENSMICG00000034439
Lemuriformes_a	ANCESTRAL SPECIES	190											ENSGT00940000155394.b #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Coquerels sifaka	MODERN SPECIES	654	APOO (ENSPCOG00000020962)	SAT1 (ENSPCOG00000022263)	ACOT9 (ENSPCOG00000017631)	PRDX4 (ENSPCOG00000021645)	PTCHD1 (ENSPCOG00000010244)	PHEX (ENSPCOG00000025455)	ENSPCOG00000017400	MBTPS2 (ENSPCOG00000008143)	SMPX (ENSPCOG00000025800)	CNKSR2 (ENSPCOG00000014884)	SYT1 (ENSPCOG00000025512) #16	PAWR (ENSPCOG00000018957) #17	PPP1R12A (ENSPCOG00000018987) #18	OTOGL (ENSPCOG00000027646) #19	PTPRQ (ENSPCOG00000012150) #20	MYF6 (ENSPCOG00000021756) #21	MYF5 (ENSPCOG00000012709) #22
Greater bamboo lemur	MODERN SPECIES	95							PANK3 (ENSPSMG00000017197)	ENSPSMG00000017175	CPEB4 (ENSPSMG00000017067)	ENSPSMG00000016953	SYT1 (ENSPSMG00000016943) #16	PAWR (ENSPSMG00000016915) #17	PPP1R12A (ENSPSMG00000016837) #18	OTOGL (ENSPSMG00000016582) #19	PTPRQ (ENSPSMG00000016269) #20	MYF6 (ENSPSMG00000016092) #21	MYF5 (ENSPSMG00000016083) #22	LIN7A (ENSPSMG00000016071) #23	ACSS3 (ENSPSMG00000016037) #24	PPFIA2 (ENSPSMG00000015931) #25	CCDC59 (ENSPSMG00000015532) #27	METTL25 (ENSPSMG00000015523) #28	TMTC2 (ENSPSMG00000015469) #29	SLC6A15 (ENSPSMG00000015347) #30	TSPAN19 (ENSPSMG00000015246)	LRRIQ1 (ENSPSMG00000015231)
Bushbaby	MODERN SPECIES	122	ENSOGAG00000010313	PHLDA1 (ENSOGAG00000010317)	NAP1L1 (ENSOGAG00000010319)	BBS10 (ENSOGAG00000025855) #7	OSBPL8 (ENSOGAG00000017084) #8	ZDHHC17 (ENSOGAG00000013994) #9	CSRP2 (ENSOGAG00000013999) #10	E2F7 (ENSOGAG00000010821) #12	ENSOGAG00000030290	NAV3 (ENSOGAG00000010604) #14	SYT1 (ENSOGAG00000009943) #16	PAWR (ENSOGAG00000027944) #17	PPP1R12A (ENSOGAG00000010740) #18	OTOGL (ENSOGAG00000030466) #19	PTPRQ (ENSOGAG00000025362) #20	MYF6 (ENSOGAG00000001038) #21	MYF5 (ENSOGAG00000001039) #22	LIN7A (ENSOGAG00000004616) #23	ACSS3 (ENSOGAG00000014813) #24	PPFIA2 (ENSOGAG00000014823) #25	ENSOGAG00000025088	CCDC59 (ENSOGAG00000004383) #27	METTL25 (ENSOGAG00000004384) #28	TMTC2 (ENSOGAG00000000477) #29	SLC6A15 (ENSOGAG00000014207) #30	LRRIQ1 (ENSOGAG00000014209)	ALX1 (ENSOGAG00000014211) #31	RASSF9 (ENSOGAG00000003208) #33	NTS (ENSOGAG00000003210) #34	MGAT4C (ENSOGAG00000003212) #35	ENSOGAG00000032440
Haplorrhini	ANCESTRAL SPECIES	3	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Tarsier	MODERN SPECIES	4455													OTOGL (ENSTSYG00000036620) #19	ENSTSYG00000026335	PTPRQ (ENSTSYG00000027505) #20	MYF6 (ENSTSYG00000003275) #21	MYF5 (ENSTSYG00000003282) #22	ENSTSYG00000010879 #23
Simiiformes	ANCESTRAL SPECIES	4	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Platyrrhini	ANCESTRAL SPECIES	6	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.u.a.a #10	ENSGT00940000154980.u.a.b #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00910000148286	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00390000014620.j	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Cebidae	ANCESTRAL SPECIES	2	ENSGT00440000039564.b	ENSGT00910000147072.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.u.a.a #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00390000014620.j	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Cebidae_a	ANCESTRAL SPECIES	8	ENSGT00910000147072.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980.u.a.a #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00550000074807.d	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00390000008708.o.a	ENSGT00940000157277 #30	ENSGT00390000014620.j	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34
Bolivian squirrel monkey	MODERN SPECIES	67	ENSSBOG00000034714	BBS10 (ENSSBOG00000022169) #7	OSBPL8 (ENSSBOG00000030671) #8	ZDHHC17 (ENSSBOG00000036173) #9	ENSSBOG00000014459 #10	E2F7 (ENSSBOG00000028674) #12	NAV3 (ENSSBOG00000036099) #14	ENSSBOG00000036163	ENSSBOG00000025849	SYT1 (ENSSBOG00000033271) #16	PAWR (ENSSBOG00000025731) #17	PPP1R12A (ENSSBOG00000033660) #18	ENSSBOG00000026289	OTOGL (ENSSBOG00000033681) #19	PTPRQ (ENSSBOG00000027538) #20	MYF6 (ENSSBOG00000021822) #21	MYF5 (ENSSBOG00000019536) #22	LIN7A (ENSSBOG00000030034) #23	ENSSBOG00000034028	ENSSBOG00000022040	ACSS3 (ENSSBOG00000018710) #24	PPFIA2 (ENSSBOG00000021244) #25	CCDC59 (ENSSBOG00000029711) #27	METTL25 (ENSSBOG00000025680) #28	ENSSBOG00000025592	TMTC2 (ENSSBOG00000024696) #29	ENSSBOG00000032046	ENSSBOG00000035574	SLC6A15 (ENSSBOG00000036273) #30	TSPAN19 (ENSSBOG00000018936)	LRRIQ1 (ENSSBOG00000024808)
Capuchin	MODERN SPECIES	156											PAWR (ENSCCAG00000026556) #17	PPP1R12A (ENSCCAG00000027422) #18	ENSCCAG00000033086	OTOGL (ENSCCAG00000019837) #19	PTPRQ (ENSCCAG00000033930) #20	MYF6 (ENSCCAG00000032873) #21	MYF5 (ENSCCAG00000029028) #22	LIN7A (ENSCCAG00000033374) #23	ACSS3 (ENSCCAG00000035103) #24	PPFIA2 (ENSCCAG00000029694) #25	CCDC59 (ENSCCAG00000021997) #27	METTL25 (ENSCCAG00000032764) #28	ENSCCAG00000034003	TMTC2 (ENSCCAG00000037661) #29	ENSCCAG00000032890
Marmoset	MODERN SPECIES	21	NAP1L1 (ENSCJAG00000001115)	ENSCJAG00000078161	BBS10 (ENSCJAG00000001113) #7	OSBPL8 (ENSCJAG00000001055) #8	ZDHHC17 (ENSCJAG00000019075) #9	ENSCJAG00000019153 #10	E2F7 (ENSCJAG00000019162) #12	NAV3 (ENSCJAG00000019176) #14	ENSCJAG00000078124	ENSCJAG00000078194	SYT1 (ENSCJAG00000019262) #16	PAWR (ENSCJAG00000019265) #17	PPP1R12A (ENSCJAG00000019271) #18	OTOGL (ENSCJAG00000019323) #19	PTPRQ (ENSCJAG00000019332) #20	MYF6 (ENSCJAG00000081789) #21	MYF5 (ENSCJAG00000019340) #22	LIN7A (ENSCJAG00000019343) #23	ACSS3 (ENSCJAG00000019352) #24	PPFIA2 (ENSCJAG00000019370) #25	CCDC59 (ENSCJAG00000019396) #27	METTL25 (ENSCJAG00000019400) #28	TMTC2 (ENSCJAG00000019420) #29	ENSCJAG00000073753	ENSCJAG00000081141	ENSCJAG00000086215	SLC6A15 (ENSCJAG00000019425) #30	TSPAN19 (ENSCJAG00000039345)	LRRIQ1 (ENSCJAG00000019445)	ALX1 (ENSCJAG00000080722) #31	ENSCJAG00000085601
Mas night monkey	MODERN SPECIES	833	ENSANAG00000023471	ENSANAG00000028981	ENSANAG00000021237 #10	E2F7 (ENSANAG00000036545) #12	ENSANAG00000032226	NAV3 (ENSANAG00000037686) #14	ENSANAG00000023582	ENSANAG00000023157	SYT1 (ENSANAG00000025826) #16	PAWR (ENSANAG00000022396) #17	PPP1R12A (ENSANAG00000034824) #18	ENSANAG00000019658	ENSANAG00000036662	OTOGL (ENSANAG00000024695) #19	PTPRQ (ENSANAG00000035871) #20	MYF6 (ENSANAG00000024892) #21	MYF5 (ENSANAG00000023208) #22	LIN7A (ENSANAG00000032889) #23	ACSS3 (ENSANAG00000034361) #24	PPFIA2 (ENSANAG00000023020) #25	CCDC59 (ENSANAG00000033505) #27	METTL25 (ENSANAG00000035794) #28	TMTC2 (ENSANAG00000036537) #29	ENSANAG00000022029	SLC6A15 (ENSANAG00000025270) #30	ENSANAG00000032039	TSPAN19 (ENSANAG00000013117)	LRRIQ1 (ENSANAG00000027300)	ALX1 (ENSANAG00000031059) #31	RASSF9 (ENSANAG00000030253) #33	NTS (ENSANAG00000030448) #34
Catarrhini	ANCESTRAL SPECIES	4	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Hominoidea	ANCESTRAL SPECIES	5	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00880000138028.b.b.b	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546.c #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Hominidae	ANCESTRAL SPECIES	4	ENSGT00910000147072	ENSGT00940000153362.a	ENSGT00880000138028.b.b.b	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546.c #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	5	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00880000138028.b.b.b	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546.c #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.a.b
Homo/Pan group	ANCESTRAL SPECIES	6	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00880000138028.b.b.b	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546.c #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.a.b
Pan	ANCESTRAL SPECIES	4	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00950000182922.a.a.a.b.a.b.a.b.b.a	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000154389.b.e	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546.c #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.a.b
Bonobo	MODERN SPECIES	3	BBS10 (ENSPPAG00000028532) #7	OSBPL8 (ENSPPAG00000043423) #8	ENSPPAG00000040481	ZDHHC17 (ENSPPAG00000030097) #9	ENSPPAG00000042089 #10	ENSPPAG00000042681	E2F7 (ENSPPAG00000002532) #12	NAV3 (ENSPPAG00000036134) #14	ENSPPAG00000015674	ENSPPAG00000028521	SYT1 (ENSPPAG00000029261) #16	PAWR (ENSPPAG00000043711) #17	PPP1R12A (ENSPPAG00000030740) #18	OTOGL (ENSPPAG00000014085) #19	PTPRQ (ENSPPAG00000000830) #20	MYF6 (ENSPPAG00000032290) #21	MYF5 (ENSPPAG00000028699) #22	LIN7A (ENSPPAG00000026771) #23	ACSS3 (ENSPPAG00000040977) #24	PPFIA2 (ENSPPAG00000033118) #25	CCDC59 (ENSPPAG00000030113) #27	METTL25 (ENSPPAG00000028130) #28	TMTC2 (ENSPPAG00000043706) #29	SLC6A15 (ENSPPAG00000043054) #30	TSPAN19 (ENSPPAG00000042222)	LRRIQ1 (ENSPPAG00000029539)	ALX1 (ENSPPAG00000034056) #31	RASSF9 (ENSPPAG00000019366) #33	NTS (ENSPPAG00000032540) #34	MGAT4C (ENSPPAG00000031798) #35	ENSPPAG00000020965
Chimpanzee	MODERN SPECIES	3	ENSPTRG00000048649	ZDHHC17 (ENSPTRG00000005243) #9	CSRP2 (ENSPTRG00000005244) #10	ENSPTRG00000051009	E2F7 (ENSPTRG00000005245) #12	NAV3 (ENSPTRG00000005247) #14	ENSPTRG00000046920	ENSPTRG00000044151	ENSPTRG00000050322	SYT1 (ENSPTRG00000024064) #16	PAWR (ENSPTRG00000005250) #17	PPP1R12A (ENSPTRG00000005252) #18	ENSPTRG00000045837	OTOGL (ENSPTRG00000005257) #19	PTPRQ (ENSPTRG00000039205) #20	MYF6 (ENSPTRG00000005260) #21	MYF5 (ENSPTRG00000005261) #22	LIN7A (ENSPTRG00000005262) #23	ACSS3 (ENSPTRG00000005263) #24	PPFIA2 (ENSPTRG00000005265) #25	CCDC59 (ENSPTRG00000005266) #27	METTL25 (ENSPTRG00000005267) #28	TMTC2 (ENSPTRG00000005268) #29	SLC6A15 (ENSPTRG00000005269) #30	TSPAN19 (ENSPTRG00000040421)	LRRIQ1 (ENSPTRG00000005271)	ALX1 (ENSPTRG00000005272) #31	RASSF9 (ENSPTRG00000005273) #33	NTS (ENSPTRG00000005274) #34	MGAT4C (ENSPTRG00000045901) #35	ENSPTRG00000044899
Human	MODERN SPECIES	3	GLIPR1 (ENSG00000139278)	KRR1 (ENSG00000111615)	PHLDA1 (ENSG00000139289)	NAP1L1 (ENSG00000187109)	BBS10 (ENSG00000179941) #7	OSBPL8 (ENSG00000091039) #8	ZDHHC17 (ENSG00000186908) #9	CSRP2 (ENSG00000175183) #10	E2F7 (ENSG00000165891) #12	NAV3 (ENSG00000067798) #14	SYT1 (ENSG00000067715) #16	PAWR (ENSG00000177425) #17	PPP1R12A (ENSG00000058272) #18	OTOGL (ENSG00000165899) #19	PTPRQ (ENSG00000139304) #20	MYF6 (ENSG00000111046) #21	MYF5 (ENSG00000111049) #22	LIN7A (ENSG00000111052) #23	ACSS3 (ENSG00000111058) #24	PPFIA2 (ENSG00000139220) #25	CCDC59 (ENSG00000133773) #27	METTL25 (ENSG00000127720) #28	TMTC2 (ENSG00000179104) #29	SLC6A15 (ENSG00000072041) #30	TSPAN19 (ENSG00000231738)	LRRIQ1 (ENSG00000133640)	ALX1 (ENSG00000180318) #31	RASSF9 (ENSG00000198774) #33	NTS (ENSG00000133636) #34	MGAT4C (ENSG00000182050) #35	C12orf50 (ENSG00000165805) #36
Gorilla	MODERN SPECIES	3	ENSGGOG00000023867	ZDHHC17 (ENSGGOG00000023287) #9	ENSGGOG00000039704 #10	ENSGGOG00000041578 #10	ENSGGOG00000038839	E2F7 (ENSGGOG00000012645) #12	NAV3 (ENSGGOG00000006574) #14	ENSGGOG00000002908	SYT1 (ENSGGOG00000024224) #16	ENSGGOG00000022534	PAWR (ENSGGOG00000010093) #17	PPP1R12A (ENSGGOG00000014574) #18	ENSGGOG00000025286	ENSGGOG00000015088 #19	PTPRQ (ENSGGOG00000011494) #20	MYF6 (ENSGGOG00000004369) #21	MYF5 (ENSGGOG00000004366) #22	LIN7A (ENSGGOG00000038053) #23	ACSS3 (ENSGGOG00000010105) #24	PPFIA2 (ENSGGOG00000026460) #25	CCDC59 (ENSGGOG00000025296) #27	METTL25 (ENSGGOG00000023239) #28	TMTC2 (ENSGGOG00000028180) #29	ENSGGOG00000025311	SLC6A15 (ENSGGOG00000010440) #30	TSPAN19 (ENSGGOG00000022316)	LRRIQ1 (ENSGGOG00000010081)	ALX1 (ENSGGOG00000000168) #31	RASSF9 (ENSGGOG00000028426) #33	NTS (ENSGGOG00000010239) #34	MGAT4C (ENSGGOG00000015293) #35
Orangutan	MODERN SPECIES	3	ENSPPYG00000032561	BBS10 (ENSPPYG00000004787) #7	ENSPPYG00000037353	OSBPL8 (ENSPPYG00000004788) #8	ZDHHC17 (ENSPPYG00000004789) #9	ENSPPYG00000031243 #10	E2F7 (ENSPPYG00000004791) #12	NAV3 (ENSPPYG00000004792) #14	ENSPPYG00000004793	SYT1 (ENSPPYG00000004794) #16	PAWR (ENSPPYG00000004795) #17	ENSPPYG00000025853	PPP1R12A (ENSPPYG00000004796) #18	OTOGL (ENSPPYG00000004797) #19	PTPRQ (ENSPPYG00000041069) #20	MYF6 (ENSPPYG00000004799) #21	MYF5 (ENSPPYG00000004800) #22	LIN7A (ENSPPYG00000039262) #23	ACSS3 (ENSPPYG00000004802) #24	PPFIA2 (ENSPPYG00000004803) #25	CCDC59 (ENSPPYG00000004804) #27	METTL25 (ENSPPYG00000004805) #28	TMTC2 (ENSPPYG00000004806) #29	SLC6A15 (ENSPPYG00000004807) #30	TSPAN19 (ENSPPYG00000038266)	LRRIQ1 (ENSPPYG00000004808)	RASSF9 (ENSPPYG00000033145) #33	NTS (ENSPPYG00000004810) #34	MGAT4C (ENSPPYG00000004811) #35	C12orf50 (ENSPPYG00000004812) #36	C12H12orf29 (ENSPPYG00000004813) #37
Gibbon	MODERN SPECIES		ENSNLEG00000004680	NAP1L1 (ENSNLEG00000004682)	ENSNLEG00000031630	BBS10 (ENSNLEG00000004748) #7	OSBPL8 (ENSNLEG00000004750) #8	ZDHHC17 (ENSNLEG00000004841) #9	ENSNLEG00000004885 #10	ENSNLEG00000028737	E2F7 (ENSNLEG00000004897) #12	NAV3 (ENSNLEG00000004917) #14	SYT1 (ENSNLEG00000004995) #16	PAWR (ENSNLEG00000005035) #17	PPP1R12A (ENSNLEG00000005041) #18	OTOGL (ENSNLEG00000005115) #19	PTPRQ (ENSNLEG00000005154) #20	MYF6 (ENSNLEG00000032583) #21	MYF5 (ENSNLEG00000005207) #22	LIN7A (ENSNLEG00000032491) #23	ACSS3 (ENSNLEG00000005227) #24	PPFIA2 (ENSNLEG00000005251) #25	CCDC59 (ENSNLEG00000033968) #27	METTL25 (ENSNLEG00000005299) #28	TMTC2 (ENSNLEG00000005311) #29	SLC6A15 (ENSNLEG00000005336) #30	LRRIQ1 (ENSNLEG00000005358)	ALX1 (ENSNLEG00000005381) #31	RASSF9 (ENSNLEG00000005386) #33	NTS (ENSNLEG00000005388) #34	MGAT4C (ENSNLEG00000005393) #35	C12orf50 (ENSNLEG00000005395) #36	C12orf29 (ENSNLEG00000005396) #37
Cercopithecidae	ANCESTRAL SPECIES	3	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Cercopithecinae	ANCESTRAL SPECIES	7	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Cercopithecinae_a	ANCESTRAL SPECIES	7	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT01050000244986.b.b.d.a.a.b	ENSGT00390000009168.hb	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00940000153524.b.a.a.k.a	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Cercopithecinae_b	ANCESTRAL SPECIES	2	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00390000009168.hb	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000014818.g.b.a.a.a.b.b	ENSGT00940000153294.m.b.s.f	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00940000153524.b.a.a.k.a
Olive baboon	MODERN SPECIES	19	ENSPANG00000028903	ZDHHC17 (ENSPANG00000004050) #9	CSRP2 (ENSPANG00000023047) #10	E2F7 (ENSPANG00000004929) #12	NAV3 (ENSPANG00000007911) #14	ENSPANG00000043139	ENSPANG00000015985	ENSPANG00000040020	SYT1 (ENSPANG00000009048) #16	PAWR (ENSPANG00000009557) #17	PPP1R12A (ENSPANG00000026354) #18	ENSPANG00000047805	OTOGL (ENSPANG00000012907) #19	PTPRQ (ENSPANG00000014456) #20	ENSPANG00000005319	MYF6 (ENSPANG00000044306) #21	MYF5 (ENSPANG00000020394) #22	LIN7A (ENSPANG00000005931) #23	ACSS3 (ENSPANG00000019084) #24	PPFIA2 (ENSPANG00000019704) #25	ENSPANG00000035488	ENSPANG00000042647	ENSPANG00000049322	CCDC59 (ENSPANG00000023011) #27	METTL25 (ENSPANG00000033969) #28	ENSPANG00000032275	TMTC2 (ENSPANG00000008622) #29	ENSPANG00000049628	ENSPANG00000005733	SLC6A15 (ENSPANG00000011238) #30	LRRIQ1 (ENSPANG00000020393)
Cercopithecinae_d	ANCESTRAL SPECIES	3	ENSGT00940000156622 #8	ENSGT00390000009168.hb	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000263748	ENSGT00940000163914.c.a	ENSGT00390000003133.i.a	ENSGT00940000155142.i.a.a	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000014818.g.b.a.a.a.b.a	ENSGT00940000153294.m.b.s.f	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00940000153524.b.a.a.k.a
Sooty mangabey	MODERN SPECIES	582	ENSCATG00000005498	ENSCATG00000039522	ENSCATG00000044128	ZDHHC17 (ENSCATG00000040479) #9	CSRP2 (ENSCATG00000040566) #10	E2F7 (ENSCATG00000035481) #12	NAV3 (ENSCATG00000032040) #14	ENSCATG00000017337	ENSCATG00000040529	ENSCATG00000044466	SYT1 (ENSCATG00000033541) #16	PAWR (ENSCATG00000034935) #17	PPP1R12A (ENSCATG00000038278) #18	OTOGL (ENSCATG00000038125) #19	PTPRQ (ENSCATG00000039610) #20	MYF6 (ENSCATG00000029151) #21	MYF5 (ENSCATG00000042162) #22	LIN7A (ENSCATG00000029939) #23	ACSS3 (ENSCATG00000030914) #24	PPFIA2 (ENSCATG00000040747) #25	ENSCATG00000038856	ENSCATG00000031323	ENSCATG00000034351	CCDC59 (ENSCATG00000044760) #27	METTL25 (ENSCATG00000044852) #28	TMTC2 (ENSCATG00000040764) #29	ENSCATG00000022828	SLC6A15 (ENSCATG00000041025) #30	TSPAN19 (ENSCATG00000034141)	LRRIQ1 (ENSCATG00000037866)	ALX1 (ENSCATG00000041762) #31
Drill	MODERN SPECIES	1141														OTOGL (ENSMLEG00000040646) #19	PTPRQ (ENSMLEG00000039303) #20	MYF6 (ENSMLEG00000034432) #21	MYF5 (ENSMLEG00000038211) #22	LIN7A (ENSMLEG00000020249) #23	ACSS3 (ENSMLEG00000042153) #24	ENSMLEG00000000975	PPFIA2 (ENSMLEG00000042213) #25
Macaca	ANCESTRAL SPECIES	6	ENSGT00960000192410	ENSGT00940000156622 #8	ENSGT01050000244986.b.b.d.a.a.b	ENSGT00390000009168.hb	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00950000183030.m.a.a.b.b.a.b.a	ENSGT00910000147454	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00940000153524.b.a.a.k.a	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Macaca_a	ANCESTRAL SPECIES	6	ENSGT01050000244986.b.b.d.a.a.b.a	ENSGT01030000234542.b.a.a.a.b.a.a.a.b.a.a	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT01050000245239.a.a	ENSGT00940000161627.a.a.a.a.b.a.a.a.b.c.a.a.a.b	ENSGT00940000158014 #14	ENSGT00950000183030.m.a.a.b.b.a.b.a	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.b.a.a.b.a.b.c.b	ENSGT00940000156120.a #18	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000153052.c.b.a.a.a.a.b.b.b	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000162858	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35
Rhesus	MODERN SPECIES	2	ENSMMUG00000052719	E2F7 (ENSMMUG00000022846) #12	ENSMMUG00000059985	ENSMMUG00000055171	ENSMMUG00000060140	NAV3 (ENSMMUG00000021329) #14	ENSMMUG00000058640	ENSMMUG00000051304	ENSMMUG00000060137	SYT1 (ENSMMUG00000005530) #16	PAWR (ENSMMUG00000015179) #17	ENSMMUG00000053591	PPP1R12A (ENSMMUG00000019214) #18	OTOGL (ENSMMUG00000000121) #19	PTPRQ (ENSMMUG00000037711) #20	MYF6 (ENSMMUG00000011667) #21	MYF5 (ENSMMUG00000011669) #22	LIN7A (ENSMMUG00000011671) #23	ENSMMUG00000017463	ACSS3 (ENSMMUG00000013800) #24	ENSMMUG00000046323	PPFIA2 (ENSMMUG00000013804) #25	ENSMMUG00000050266	CCDC59 (ENSMMUG00000063005) #27	METTL25 (ENSMMUG00000002514) #28	ENSMMUG00000059068	TMTC2 (ENSMMUG00000011305) #29	ENSMMUG00000043159	ENSMMUG00000058294	SLC6A15 (ENSMMUG00000013650) #30	TSPAN19 (ENSMMUG00000042255)
Crab-eating macaque	MODERN SPECIES	2	ENSMFAG00000059233	NAV3 (ENSMFAG00000044289) #14	ENSMFAG00000034925	ENSMFAG00000034379	ENSMFAG00000000157	SYT1 (ENSMFAG00000003495) #16	ENSMFAG00000050054	PAWR (ENSMFAG00000062333) #17	ENSMFAG00000063729	ENSMFAG00000049694	PPP1R12A (ENSMFAG00000034239) #18	OTOGL (ENSMFAG00000031786) #19	PTPRQ (ENSMFAG00000044210) #20	ENSMFAG00000052094	ENSMFAG00000058049	MYF6 (ENSMFAG00000033881) #21	MYF5 (ENSMFAG00000042044) #22	LIN7A (ENSMFAG00000040160) #23	ENSMFAG00000031214	ACSS3 (ENSMFAG00000040344) #24	PPFIA2 (ENSMFAG00000031204) #25	ENSMFAG00000049838	CCDC59 (ENSMFAG00000034303) #27	METTL25 (ENSMFAG00000036420) #28	ENSMFAG00000051090	ENSMFAG00000052001	TMTC2 (ENSMFAG00000038030) #29	ENSMFAG00000053756	ENSMFAG00000051138	ENSMFAG00000060580	ENSMFAG00000047713
Pig-tailed macaque	MODERN SPECIES	517	CSRP2 (ENSMNEG00000030922) #10	E2F7 (ENSMNEG00000025875) #12	NAV3 (ENSMNEG00000043424) #14	ENSMNEG00000000985	ENSMNEG00000009689	ENSMNEG00000026858	ENSMNEG00000028899	ENSMNEG00000037055	ENSMNEG00000038165	ENSMNEG00000031657	SYT1 (ENSMNEG00000030551) #16	PAWR (ENSMNEG00000004020) #17	PPP1R12A (ENSMNEG00000033679) #18	OTOGL (ENSMNEG00000034772) #19	PTPRQ (ENSMNEG00000045562) #20	MYF6 (ENSMNEG00000019739) #21	MYF5 (ENSMNEG00000039510) #22	LIN7A (ENSMNEG00000040769) #23	ACSS3 (ENSMNEG00000030423) #24	ENSMNEG00000021297	PPFIA2 (ENSMNEG00000041825) #25	CCDC59 (ENSMNEG00000037462) #27	METTL25 (ENSMNEG00000042500) #28	TMTC2 (ENSMNEG00000028808) #29	ENSMNEG00000032829	SLC6A15 (ENSMNEG00000005563) #30	TSPAN19 (ENSMNEG00000036225)	LRRIQ1 (ENSMNEG00000037379)	ALX1 (ENSMNEG00000034993) #31	ENSMNEG00000000984	RASSF9 (ENSMNEG00000033486) #33
Vervet Monkey	MODERN SPECIES	2	ENSCSAG00000018909	NAP1L1 (ENSCSAG00000004030)	BBS10 (ENSCSAG00000004028) #7	OSBPL8 (ENSCSAG00000004024) #8	ZDHHC17 (ENSCSAG00000004014) #9	CSRP2 (ENSCSAG00000004009) #10	E2F7 (ENSCSAG00000003998) #12	ENSCSAG00000003979 #14	ENSCSAG00000018912	ENSCSAG00000018914	SYT1 (ENSCSAG00000003971) #16	PAWR (ENSCSAG00000003962) #17	PPP1R12A (ENSCSAG00000003956) #18	OTOGL (ENSCSAG00000003939) #19	PTPRQ (ENSCSAG00000003913) #20	MYF6 (ENSCSAG00000003893) #21	MYF5 (ENSCSAG00000003889) #22	LIN7A (ENSCSAG00000003887) #23	ACSS3 (ENSCSAG00000003882) #24	PPFIA2 (ENSCSAG00000003876) #25	ENSCSAG00000003868 #25	CCDC59 (ENSCSAG00000003867) #27	METTL25 (ENSCSAG00000003863) #28	ENSCSAG00000018917	TMTC2 (ENSCSAG00000003860) #29	ENSCSAG00000018919	ENSCSAG00000018921	ENSCSAG00000018923	SLC6A15 (ENSCSAG00000003858) #30	TSPAN19 (ENSCSAG00000003855)	LRRIQ1 (ENSCSAG00000003850)
Rhinopithecus	ANCESTRAL SPECIES	603														ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25
Black snub-nosed monkey	MODERN SPECIES	485															PTPRQ (ENSRBIG00000036416) #20	MYF6 (ENSRBIG00000034023) #21	MYF5 (ENSRBIG00000011474) #22
Golden snub-nosed monkey	MODERN SPECIES	2447														OTOGL (ENSRROG00000003053) #19	PTPRQ (ENSRROG00000040104) #20	MYF6 (ENSRROG00000040631) #21	MYF5 (ENSRROG00000040728) #22	LIN7A (ENSRROG00000035008) #23	ACSS3 (ENSRROG00000030884) #24	PPFIA2 (ENSRROG00000012213) #25
Sauria	ANCESTRAL SPECIES	4	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Lepidosauria	ANCESTRAL SPECIES	3	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
tuatara	MODERN SPECIES	1779	ENSSPUG00000007507	PHLDA1 (ENSSPUG00000007502)	NAP1L1 (ENSSPUG00000007452)	BBS10 (ENSSPUG00000007433) #7	OSBPL8 (ENSSPUG00000007161) #8	ZDHHC17 (ENSSPUG00000007115) #9	CSRP2 (ENSSPUG00000007078) #10	E2F7 (ENSSPUG00000007017) #12	NAV3 (ENSSPUG00000006945) #14	SYT1 (ENSSPUG00000006892) #16	PAWR (ENSSPUG00000006881) #17	PPP1R12A (ENSSPUG00000006848) #18	RPS16 (ENSSPUG00000006832)	OTOGL (ENSSPUG00000006721) #19	PTPRQ (ENSSPUG00000006635) #20	MYF6 (ENSSPUG00000006611) #21	ENSSPUG00000006578 #23	ENSSPUG00000006572 #23	ACSS3 (ENSSPUG00000006460) #24	PPFIA2 (ENSSPUG00000006051) #25
Episquamata	ANCESTRAL SPECIES	3	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Toxicofera	ANCESTRAL SPECIES	7	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Elapidae	ANCESTRAL SPECIES	6	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.f.a #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277.k #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Elapidae_a	ANCESTRAL SPECIES	1	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.f.a #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277.k #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Acanthophiinae	ANCESTRAL SPECIES		ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b.f.a #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277.k #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Eastern brown snake	MODERN SPECIES		PHLDA1 (ENSPTXG00000007382)	NAP1L1 (ENSPTXG00000007381)	ENSPTXG00000007380	OSBPL8 (ENSPTXG00000007376) #8	ZDHHC17 (ENSPTXG00000007375) #9	CSRP2 (ENSPTXG00000007374) #10	E2F7 (ENSPTXG00000007372) #12	NAV3 (ENSPTXG00000007360) #14	SYT1 (ENSPTXG00000007357) #16	PAWR (ENSPTXG00000007356) #17	PPP1R12A (ENSPTXG00000007355) #18	RPS16 (ENSPTXG00000007353)	OTOGL (ENSPTXG00000007346) #19	ENSPTXG00000007343	PTPRQ (ENSPTXG00000007341) #20	MYF6 (ENSPTXG00000007339) #21	MYF5 (ENSPTXG00000007338) #22	LIN7A (ENSPTXG00000007335) #23	ACSS3 (ENSPTXG00000007330) #24	PPFIA2 (ENSPTXG00000007321) #25	CCDC59 (ENSPTXG00000007319) #27	METTL25 (ENSPTXG00000007317) #28	TMTC2 (ENSPTXG00000007315) #29	ENSPTXG00000007314 #30	ENSPTXG00000007312 #30	ENSPTXG00000007310	ALX1 (ENSPTXG00000007309) #31	RASSF9 (ENSPTXG00000007307) #33	NTS (ENSPTXG00000007306) #34	MGAT4C (ENSPTXG00000007305) #35	C12orf50 (ENSPTXG00000007304) #36
Mainland tiger snake	MODERN SPECIES	20	NAP1L1 (ENSNSUG00000001802)	ENSNSUG00000001793	ZDHHC17 (ENSNSUG00000001783) #9	CSRP2 (ENSNSUG00000001781) #10	E2F7 (ENSNSUG00000001756) #12	ENSNSUG00000001751	NAV3 (ENSNSUG00000001737) #14	SYT1 (ENSNSUG00000001720) #16	PAWR (ENSNSUG00000001717) #17	PPP1R12A (ENSNSUG00000000977) #18	ENSNSUG00000000970	ENSNSUG00000000966	OTOGL (ENSNSUG00000000909) #19	ENSNSUG00000000905	PTPRQ (ENSNSUG00000000888) #20	MYF6 (ENSNSUG00000000885) #21	MYF5 (ENSNSUG00000000881) #22	LIN7A (ENSNSUG00000000879) #23	ACSS3 (ENSNSUG00000000722) #24	PPFIA2 (ENSNSUG00000000679) #25	CCDC59 (ENSNSUG00000000657) #27	METTL25 (ENSNSUG00000000356) #28	TMTC2 (ENSNSUG00000000314) #29	ENSNSUG00000000296 #30	ENSNSUG00000000286 #30	ENSNSUG00000000256	ALX1 (ENSNSUG00000000235) #31	RASSF9 (ENSNSUG00000000215) #33	NTS (ENSNSUG00000000030) #34	MGAT4C (ENSNSUG00000000019) #35
Blue-lipped sea krait	MODERN SPECIES	6278																MYF6 (ENSLLTG00000009704) #21	MYF5 (ENSLLTG00000009715) #22
Indian cobra	MODERN SPECIES	6	ENSNNAG00000006093	PHLDA1 (ENSNNAG00000006109)	NAP1L1 (ENSNNAG00000006156)	OSBPL8 (ENSNNAG00000006212) #8	ZDHHC17 (ENSNNAG00000006609) #9	CSRP2 (ENSNNAG00000006626) #10	E2F7 (ENSNNAG00000006676) #12	NAV3 (ENSNNAG00000007065) #14	SYT1 (ENSNNAG00000007300) #16	PAWR (ENSNNAG00000007341) #17	PPP1R12A (ENSNNAG00000007491) #18	RPS16 (ENSNNAG00000010459)	OTOGL (ENSNNAG00000010528) #19	ENSNNAG00000011195	PTPRQ (ENSNNAG00000011257) #20	MYF6 (ENSNNAG00000011423) #21	MYF5 (ENSNNAG00000011436) #22	LIN7A (ENSNNAG00000011463) #23	ACSS3 (ENSNNAG00000011558) #24	PPFIA2 (ENSNNAG00000011658) #25	CCDC59 (ENSNNAG00000012004) #27	METTL25 (ENSNNAG00000012065) #28	TMTC2 (ENSNNAG00000012643) #29	SLC6A15 (ENSNNAG00000012726) #30	ENSNNAG00000012826	ALX1 (ENSNNAG00000012891) #31	RASSF9 (ENSNNAG00000012912) #33	NTS (ENSNNAG00000012925) #34	MGAT4C (ENSNNAG00000012939) #35	C12orf50 (ENSNNAG00000012961) #36	C12orf29 (ENSNNAG00000012986) #37
Lizard	MODERN SPECIES	4	ZFC3H1 (ENSACAG00000007327)	LGR5 (ENSACAG00000007193)	TSPAN8 (ENSACAG00000007164)	PTPRR (ENSACAG00000021144)	PTPRB (ENSACAG00000001460)	ENSACAG00000045283	ENSACAG00000045240	SYT1 (ENSACAG00000013826) #16	ENSACAG00000039009	PAWR (ENSACAG00000038363) #17	PPP1R12A (ENSACAG00000014016) #18	ENSACAG00000042872	ENSACAG00000014176	OTOGL (ENSACAG00000014205) #19	PTPRQ (ENSACAG00000014272) #20	MYF6 (ENSACAG00000042468) #21	MYF5 (ENSACAG00000014431) #22	LIN7A (ENSACAG00000014452) #23	ACSS3 (ENSACAG00000014473) #24	ENSACAG00000039448	PPFIA2 (ENSACAG00000014550) #25	ENSACAG00000014707	METTL25 (ENSACAG00000014713) #28	ENSACAG00000044939	ENSACAG00000034859	TMTC2 (ENSACAG00000014731) #29	ENSACAG00000042686	ENSACAG00000005259	SLC6A15 (ENSACAG00000010944) #30	ENSACAG00000011087	ALX1 (ENSACAG00000011108) #31
Laterata	ANCESTRAL SPECIES	6	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT01040000241648	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Argentine black and white tegu	MODERN SPECIES	6	PHLDA1 (ENSSMRG00000001842)	NAP1L1 (ENSSMRG00000001927)	OSBPL8 (ENSSMRG00000002083) #8	ZDHHC17 (ENSSMRG00000002140) #9	CSRP2 (ENSSMRG00000002146) #10	E2F7 (ENSSMRG00000002156) #12	NAV3 (ENSSMRG00000002199) #14	SYT1 (ENSSMRG00000010234) #16	PAWR (ENSSMRG00000010238) #17	PPP1R12A (ENSSMRG00000010257) #18	RPS16 (ENSSMRG00000010263)	OTOGL (ENSSMRG00000010267) #19	ENSSMRG00000010274	ENSSMRG00000010275	PTPRQ (ENSSMRG00000010276) #20	MYF6 (ENSSMRG00000010285) #21	MYF5 (ENSSMRG00000010286) #22	LIN7A (ENSSMRG00000010290) #23	ACSS3 (ENSSMRG00000010292) #24	PPFIA2 (ENSSMRG00000010302) #25	ENSSMRG00000010304	METTL25 (ENSSMRG00000010319) #28	TMTC2 (ENSSMRG00000010414) #29	SLC6A15 (ENSSMRG00000010425) #30	ENSSMRG00000010470	ENSSMRG00000010489	ALX1 (ENSSMRG00000010491) #31	RASSF9 (ENSSMRG00000010505) #33	NTS (ENSSMRG00000010506) #34	MGAT4C (ENSSMRG00000010507) #35	C12orf50 (ENSSMRG00000010526) #36
Common wall lizard	MODERN SPECIES	1	NAP1L1 (ENSPMRG00000018484)	OSBPL8 (ENSPMRG00000018504) #8	ZDHHC17 (ENSPMRG00000018520) #9	ENSPMRG00000018530	CSRP2 (ENSPMRG00000018535) #10	E2F7 (ENSPMRG00000018546) #12	NAV3 (ENSPMRG00000018638) #14	SYT1 (ENSPMRG00000018726) #16	PAWR (ENSPMRG00000018731) #17	PPP1R12A (ENSPMRG00000018742) #18	ENSPMRG00000018764	ENSPMRG00000018768	OTOGL (ENSPMRG00000018808) #19	ENSPMRG00000019031	PTPRQ (ENSPMRG00000019053) #20	MYF6 (ENSPMRG00000019140) #21	MYF5 (ENSPMRG00000019143) #22	LIN7A (ENSPMRG00000019147) #23	ACSS3 (ENSPMRG00000019167) #24	PPFIA2 (ENSPMRG00000019499) #25	ENSPMRG00000021433	CCDC59 (ENSPMRG00000021438) #27	METTL25 (ENSPMRG00000021455) #28	ENSPMRG00000021479	TMTC2 (ENSPMRG00000021488) #29	ENSPMRG00000021497	SLC6A15 (ENSPMRG00000021501) #30	ENSPMRG00000021518	ALX1 (ENSPMRG00000021545) #31	RASSF9 (ENSPMRG00000021551) #33	NTS (ENSPMRG00000009086) #34
Archelosauria	ANCESTRAL SPECIES	3	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Cryptodira	ANCESTRAL SPECIES	11	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Testudinoidea	ANCESTRAL SPECIES	4	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713.u #12	ENSGT00940000157713.v #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Testudinidae	ANCESTRAL SPECIES	12	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713.u #12	ENSGT00940000157713.v #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Goode s thornscrub tortoise	MODERN SPECIES		PHLDA1 (ENSGEVG00005000018)	NAP1L1 (ENSGEVG00005000012)	BBS10 (ENSGEVG00005008898) #7	OSBPL8 (ENSGEVG00005008789) #8	ZDHHC17 (ENSGEVG00005008730) #9	CSRP2 (ENSGEVG00005008707) #10	ENSGEVG00005008668 #12	ENSGEVG00005008646 #12	NAV3 (ENSGEVG00005008397) #14	SYT1 (ENSGEVG00005008297) #16	PAWR (ENSGEVG00005008262) #17	PPP1R12A (ENSGEVG00005008199) #18	RPS16 (ENSGEVG00005008158)	OTOGL (ENSGEVG00005007663) #19	PTPRQ (ENSGEVG00005007409) #20	MYF6 (ENSGEVG00005007365) #21	MYF5 (ENSGEVG00005007350) #22	LIN7A (ENSGEVG00005007306) #23	ACSS3 (ENSGEVG00005007236) #24	PPFIA2 (ENSGEVG00005007013) #25	CCDC59 (ENSGEVG00005006965) #27	METTL25 (ENSGEVG00005006938) #28	TMTC2 (ENSGEVG00005006853) #29	ENSGEVG00005006829	ENSGEVG00005006780 #30	ENSGEVG00005006758 #30	ENSGEVG00005006696	ALX1 (ENSGEVG00005006662) #31	RASSF9 (ENSGEVG00005006645) #33	NTS (ENSGEVG00005006613) #34	MGAT4C (ENSGEVG00005006595) #35
Abingdon island giant tortoise	MODERN SPECIES	2351				ENSCABG00000020097	ENSCABG00000020235	ENSCABG00000020236	ENSCABG00000020237	KLF8 (ENSCABG00000020238)	ENSCABG00000020239	ENSCABG00000020241	ENSCABG00000020242	ENSCABG00000020244	OTOGL (ENSCABG00000020245) #19	ENSCABG00000020248	PTPRQ (ENSCABG00000020251) #20	MYF6 (ENSCABG00000020254) #21	MYF5 (ENSCABG00000020256) #22
Emydidae	ANCESTRAL SPECIES	10	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713.u #12	ENSGT00940000157713.v #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00950000182956.b.b.a.a.c.a.l
painted turtle	MODERN SPECIES		PPME1 (ENSCPBG00000000050)	P4HA3 (ENSCPBG00000000051)	ENSCPBG00000000052	ENSCPBG00000000053	SPCS2 (ENSCPBG00000000054)	XRRA1 (ENSCPBG00000000055)	RNF169 (ENSCPBG00000000056)	SYT1 (ENSCPBG00000000057) #16	ENSCPBG00000000058	PAWR (ENSCPBG00000000059) #17	PPP1R12A (ENSCPBG00000000060) #18	RPS16 (ENSCPBG00000000062)	OTOGL (ENSCPBG00000000063) #19	ENSCPBG00000000065	PTPRQ (ENSCPBG00000000067) #20	MYF6 (ENSCPBG00000000068) #21	MYF5 (ENSCPBG00000000069) #22	LIN7A (ENSCPBG00000000070) #23	ACSS3 (ENSCPBG00000000071) #24	ENSCPBG00000000072	PPFIA2 (ENSCPBG00000000073) #25	CCDC59 (ENSCPBG00000000075) #27	METTL25 (ENSCPBG00000000076) #28	TMTC2 (ENSCPBG00000000077) #29	SLC6A15 (ENSCPBG00000000079) #30	TSPAN19 (ENSCPBG00000000080)	ENSCPBG00000000081	ENSCPBG00000000082	ALX1 (ENSCPBG00000000083) #31	RASSF9 (ENSCPBG00000000084) #33	NTS (ENSCPBG00000000085) #34
Three-toed box turtle	MODERN SPECIES	28	PHLDA1 (ENSTMTG00000017953)	NAP1L1 (ENSTMTG00000017966)	BBS10 (ENSTMTG00000017983) #7	OSBPL8 (ENSTMTG00000018028) #8	ZDHHC17 (ENSTMTG00000018059) #9	CSRP2 (ENSTMTG00000018107) #10	ENSTMTG00000018112 #12	ENSTMTG00000018124 #12	NAV3 (ENSTMTG00000018146) #14	SYT1 (ENSTMTG00000018366) #16	PAWR (ENSTMTG00000018399) #17	PPP1R12A (ENSTMTG00000018415) #18	RPS16 (ENSTMTG00000018474)	OTOGL (ENSTMTG00000018509) #19	PTPRQ (ENSTMTG00000018868) #20	MYF6 (ENSTMTG00000018967) #21	MYF5 (ENSTMTG00000000077) #22	ENSTMTG00000000099 #23	LIN7A (ENSTMTG00000000157) #23	ACSS3 (ENSTMTG00000000183) #24	ENSTMTG00000000244 #25	ENSTMTG00000000306 #25	CCDC59 (ENSTMTG00000000341) #27	METTL25 (ENSTMTG00000000386) #28	TMTC2 (ENSTMTG00000000433) #29	SLC6A15 (ENSTMTG00000000460) #30	ENSTMTG00000000487	TSPAN19 (ENSTMTG00000000501)	ENSTMTG00000000530	ALX1 (ENSTMTG00000000570) #31	RASSF9 (ENSTMTG00000000576) #33
Chinese turtle	MODERN SPECIES	718				ENSPSIG00000001298	ZDHHC17 (ENSPSIG00000012905) #9	CSRP2 (ENSPSIG00000012637) #10	E2F7 (ENSPSIG00000012629) #12	NAV3 (ENSPSIG00000009060) #14	SYT1 (ENSPSIG00000007501) #16	PAWR (ENSPSIG00000007487) #17	PPP1R12A (ENSPSIG00000017200) #18	ENSPSIG00000016930	ENSPSIG00000016823	OTOGL (ENSPSIG00000014034) #19	ENSPSIG00000013550	MYF6 (ENSPSIG00000012468) #21	MYF5 (ENSPSIG00000012000) #22	LIN7A (ENSPSIG00000011871) #23	ACSS3 (ENSPSIG00000009322) #24	PPFIA2 (ENSPSIG00000007454) #25	METTL25 (ENSPSIG00000007019) #28	TMTC2 (ENSPSIG00000006034) #29
Archosauria	ANCESTRAL SPECIES	4	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Australian saltwater crocodile	MODERN SPECIES	49	NAP1L1 (ENSCPRG00005006105)	BBS10 (ENSCPRG00005006087) #7	OSBPL8 (ENSCPRG00005006069) #8	ZDHHC17 (ENSCPRG00005006020) #9	CSRP2 (ENSCPRG00005005963) #10	E2F7 (ENSCPRG00005005958) #12	ENSCPRG00005005917	NAV3 (ENSCPRG00005004050) #14	SYT1 (ENSCPRG00005003800) #16	PAWR (ENSCPRG00005003774) #17	PPP1R12A (ENSCPRG00005003724) #18	RPS16 (ENSCPRG00005003696)	OTOGL (ENSCPRG00005003554) #19	ENSCPRG00005003525	PTPRQ (ENSCPRG00005003495) #20	MYF6 (ENSCPRG00005003486) #21	MYF5 (ENSCPRG00005003473) #22	ENSCPRG00005003470 #23	LIN7A (ENSCPRG00005003468) #23	ACSS3 (ENSCPRG00005003271) #24	PPFIA2 (ENSCPRG00005003178) #25	CCDC59 (ENSCPRG00005003134) #27	METTL25 (ENSCPRG00005003132) #28	TMTC2 (ENSCPRG00005003097) #29	SLC6A15 (ENSCPRG00005003057) #30	TSPAN19 (ENSCPRG00005003030)	ENSCPRG00005003015	ENSCPRG00005003000	ALX1 (ENSCPRG00005002988) #31	RASSF9 (ENSCPRG00005002976) #33	NTS (ENSCPRG00005002955) #34
Aves	ANCESTRAL SPECIES	1	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
African ostrich	MODERN SPECIES	426	ENSSCUG00000009190	ENSSCUG00000009187	KRR1 (ENSSCUG00000009184)	NAP1L1 (ENSSCUG00000009180)	OSBPL8 (ENSSCUG00000009164) #8	ZDHHC17 (ENSSCUG00000009151) #9	CSRP2 (ENSSCUG00000009147) #10	E2F7 (ENSSCUG00000009145) #12	ENSSCUG00000009143	NAV3 (ENSSCUG00000009108) #14	SYT1 (ENSSCUG00000009090) #16	PPP1R12A (ENSSCUG00000009087) #18	RPS16 (ENSSCUG00000009078)	OTOGL (ENSSCUG00000009047) #19	PTPRQ (ENSSCUG00000009002) #20	MYF6 (ENSSCUG00000008999) #21	ENSSCUG00000008997 #23	LIN7A (ENSSCUG00000008995) #23	ACSS3 (ENSSCUG00000008985) #24	PPFIA2 (ENSSCUG00000008966) #25	CCDC59 (ENSSCUG00000008956) #27	METTL25 (ENSSCUG00000008954) #28	TMTC2 (ENSSCUG00000008949) #29
Neognathae	ANCESTRAL SPECIES	3	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Neognathae_b	ANCESTRAL SPECIES	2	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Neognathae_c	ANCESTRAL SPECIES		ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00960000190133	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00500000044938 #37
Golden eagle	MODERN SPECIES	18	PHLDA1 (ENSACCG00020011262)	NAP1L1 (ENSACCG00020011243)	BBS10 (ENSACCG00020011231) #7	OSBPL8 (ENSACCG00020011213) #8	ZDHHC17 (ENSACCG00020011189) #9	CSRP2 (ENSACCG00020011176) #10	E2F7 (ENSACCG00020011147) #12	NAV3 (ENSACCG00020011091) #14	SYT1 (ENSACCG00020011033) #16	PAWR (ENSACCG00020011015) #17	PPP1R12A (ENSACCG00020010939) #18	RPS16 (ENSACCG00020010874)	OTOGL (ENSACCG00020010835) #19	ENSACCG00020010786	PTPRQ (ENSACCG00020010748) #20	MYF6 (ENSACCG00020010717) #21	MYF5 (ENSACCG00020010710) #22	LIN7A (ENSACCG00020010701) #23	ACSS3 (ENSACCG00020010468) #24	PPFIA2 (ENSACCG00020010168) #25	ENSACCG00020010123	CCDC59 (ENSACCG00020010109) #27	ENSACCG00020016084	METTL25 (ENSACCG00020016068) #28	TMTC2 (ENSACCG00020016051) #29	ENSACCG00020016040	SLC6A15 (ENSACCG00020016027) #30	TSPAN19 (ENSACCG00020016013)	ENSACCG00020015998	ALX1 (ENSACCG00020015990) #31	RASSF9 (ENSACCG00020015979) #33
Kakapo	MODERN SPECIES	20	BBS10 (ENSSHBG00005003419) #7	ENSSHBG00005003428	OSBPL8 (ENSSHBG00005003509) #8	ZDHHC17 (ENSSHBG00005003761) #9	CSRP2 (ENSSHBG00005003817) #10	E2F7 (ENSSHBG00005003861) #12	NAV3 (ENSSHBG00005004247) #14	ENSSHBG00005004847	SYT1 (ENSSHBG00005004867) #16	PAWR (ENSSHBG00005004872) #17	PPP1R12A (ENSSHBG00005004881) #18	RPS16 (ENSSHBG00005004902)	OTOGL (ENSSHBG00005004951) #19	ENSSHBG00005004998	PTPRQ (ENSSHBG00005005034) #20	MYF6 (ENSSHBG00005005072) #21	MYF5 (ENSSHBG00005005076) #22	LIN7A (ENSSHBG00005005088) #23	ACSS3 (ENSSHBG00005005107) #24	PPFIA2 (ENSSHBG00005005123) #25	CCDC59 (ENSSHBG00005005147) #27	METTL25 (ENSSHBG00005005155) #28	TMTC2 (ENSSHBG00005005167) #29	SLC6A15 (ENSSHBG00005005181) #30	TSPAN19 (ENSSHBG00005005237)	ENSSHBG00005005257	ALX1 (ENSSHBG00005005283) #31	ENSSHBG00005005293	RASSF9 (ENSSHBG00005005303) #33	NTS (ENSSHBG00005005318) #34	MGAT4C (ENSSHBG00005005332) #35
Passeriformes	ANCESTRAL SPECIES	3	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Great tit	MODERN SPECIES	10	PHLDA1 (ENSPMJG00000012650)	NAP1L1 (ENSPMJG00000012651)	OSBPL8 (ENSPMJG00000012652) #8	ZDHHC17 (ENSPMJG00000012653) #9	CSRP2 (ENSPMJG00000012654) #10	E2F7 (ENSPMJG00000012655) #12	NAV3 (ENSPMJG00000012656) #14	SYT1 (ENSPMJG00000012662) #16	ENSPMJG00000012663	PAWR (ENSPMJG00000012664) #17	PPP1R12A (ENSPMJG00000012665) #18	RPS16 (ENSPMJG00000012667)	OTOGL (ENSPMJG00000012668) #19	ENSPMJG00000012669	PTPRQ (ENSPMJG00000012670) #20	MYF6 (ENSPMJG00000012671) #21	MYF5 (ENSPMJG00000012672) #22	LIN7A (ENSPMJG00000012673) #23	ACSS3 (ENSPMJG00000012674) #24	PPFIA2 (ENSPMJG00000012675) #25	CCDC59 (ENSPMJG00000012676) #27	METTL25 (ENSPMJG00000012677) #28	TMTC2 (ENSPMJG00000012678) #29	SLC6A15 (ENSPMJG00000012682) #30	ENSPMJG00000012685	ALX1 (ENSPMJG00000012686) #31	RASSF9 (ENSPMJG00000012688) #33	NTS (ENSPMJG00000012689) #34	MGAT4C (ENSPMJG00000012690) #35	C12orf50 (ENSPMJG00000012691) #36	C12orf29 (ENSPMJG00000012692) #37
Passeriformes_d	ANCESTRAL SPECIES	3	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36	ENSGT00500000044938 #37
Flycatcher	MODERN SPECIES	10	ENSFALG00000010390	KRR1 (ENSFALG00000010395)	PHLDA1 (ENSFALG00000014745)	NAP1L1 (ENSFALG00000010403)	OSBPL8 (ENSFALG00000010404) #8	ZDHHC17 (ENSFALG00000010415) #9	CSRP2 (ENSFALG00000010426) #10	E2F7 (ENSFALG00000010433) #12	NAV3 (ENSFALG00000010449) #14	SYT1 (ENSFALG00000010476) #16	PPP1R12A (ENSFALG00000010487) #18	ENSFALG00000028909	OTOGL (ENSFALG00000010495) #19	ENSFALG00000026391	PTPRQ (ENSFALG00000010498) #20	MYF6 (ENSFALG00000010503) #21	MYF5 (ENSFALG00000010507) #22	LIN7A (ENSFALG00000010511) #23	ACSS3 (ENSFALG00000010517) #24	PPFIA2 (ENSFALG00000010521) #25	CCDC59 (ENSFALG00000010525) #27	METTL25 (ENSFALG00000010529) #28	TMTC2 (ENSFALG00000010537) #29	SLC6A15 (ENSFALG00000010541) #30	ENSFALG00000028693	ALX1 (ENSFALG00000010547) #31	RASSF9 (ENSFALG00000027104) #33	NTS (ENSFALG00000025234) #34	MGAT4C (ENSFALG00000010557) #35	C12orf50 (ENSFALG00000010559) #36	C12orf29 (ENSFALG00000023606) #37
Passeriformes_g	ANCESTRAL SPECIES	4	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00500000044938 #37	ENSGT00730000111039.C
Medium ground finch	MODERN SPECIES	13	ENSGFOG00000005369	ENSGFOG00000005356	ENSGFOG00000005348	KRR1 (ENSGFOG00000005331)	NAP1L1 (ENSGFOG00000005292)	OSBPL8 (ENSGFOG00000005268) #8	ZDHHC17 (ENSGFOG00000005185) #9	CSRP2 (ENSGFOG00000005156) #10	E2F7 (ENSGFOG00000005143) #12	NAV3 (ENSGFOG00000005066) #14	SYT1 (ENSGFOG00000005048) #16	PPP1R12A (ENSGFOG00000005009) #18	RPS16 (ENSGFOG00000004986)	OTOGL (ENSGFOG00000004777) #19	PTPRQ (ENSGFOG00000004653) #20	MYF6 (ENSGFOG00000004628) #21	MYF5 (ENSGFOG00000004624) #22	LIN7A (ENSGFOG00000004616) #23	ACSS3 (ENSGFOG00000004536) #24	ENSGFOG00000000855 #25	CCDC59 (ENSGFOG00000000604) #27	METTL25 (ENSGFOG00000000588) #28	TMTC2 (ENSGFOG00000000573) #29
Passeroidea	ANCESTRAL SPECIES	3	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00500000044938 #37	ENSGT00730000111039.C
Zebra finch	MODERN SPECIES	11	PHLDA1 (ENSTGUG00000018888)	NAP1L1 (ENSTGUG00000007412)	BBS10 (ENSTGUG00000007444) #7	OSBPL8 (ENSTGUG00000007445) #8	ZDHHC17 (ENSTGUG00000007477) #9	CSRP2 (ENSTGUG00000028299) #10	E2F7 (ENSTGUG00000007515) #12	NAV3 (ENSTGUG00000007519) #14	SYT1 (ENSTGUG00000007572) #16	PAWR (ENSTGUG00000020006) #17	PPP1R12A (ENSTGUG00000007603) #18	RPS16 (ENSTGUG00000007667)	OTOGL (ENSTGUG00000007680) #19	ENSTGUG00000023557	PTPRQ (ENSTGUG00000007720) #20	MYF6 (ENSTGUG00000007751) #21	MYF5 (ENSTGUG00000007755) #22	LIN7A (ENSTGUG00000007757) #23	ACSS3 (ENSTGUG00000007763) #24	PPFIA2 (ENSTGUG00000007778) #25	CCDC59 (ENSTGUG00000007835) #27	METTL25 (ENSTGUG00000007841) #28	TMTC2 (ENSTGUG00000007855) #29	SLC6A15 (ENSTGUG00000007865) #30	ENSTGUG00000007889	ALX1 (ENSTGUG00000007899) #31	RASSF9 (ENSTGUG00000007908) #33	NTS (ENSTGUG00000027877) #34	MGAT4C (ENSTGUG00000007933) #35	ENSTGUG00000025254	C12orf29 (ENSTGUG00000007945) #37
Common canary	MODERN SPECIES	6	PHLDA1 (ENSSCAG00000008868)	NAP1L1 (ENSSCAG00000008861)	OSBPL8 (ENSSCAG00000008836) #8	ZDHHC17 (ENSSCAG00000008792) #9	CSRP2 (ENSSCAG00000008783) #10	E2F7 (ENSSCAG00000008773) #12	ENSSCAG00000008755 #14	ENSSCAG00000008738 #14	SYT1 (ENSSCAG00000008697) #16	PAWR (ENSSCAG00000008657) #17	PPP1R12A (ENSSCAG00000008580) #18	RPS16 (ENSSCAG00000008547)	OTOGL (ENSSCAG00000008492) #19	ENSSCAG00000008481	PTPRQ (ENSSCAG00000008462) #20	MYF6 (ENSSCAG00000008454) #21	MYF5 (ENSSCAG00000008451) #22	LIN7A (ENSSCAG00000008443) #23	ACSS3 (ENSSCAG00000008416) #24	PPFIA2 (ENSSCAG00000008164) #25	CCDC59 (ENSSCAG00000008055) #27	METTL25 (ENSSCAG00000007930) #28	MGAT4C (ENSSCAG00000007907) #35	NTS (ENSSCAG00000007904) #34	RASSF9 (ENSSCAG00000007901) #33	ALX1 (ENSSCAG00000007890) #31	ENSSCAG00000007880	SLC6A15 (ENSSCAG00000007869) #30	TMTC2 (ENSSCAG00000007852) #29	C12orf29 (ENSSCAG00000007807) #37	CEP290 (ENSSCAG00000007595)
Galloanserae	ANCESTRAL SPECIES	3	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Anatidae	ANCESTRAL SPECIES	14	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT01100000267073	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00960000187527	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Duck	MODERN SPECIES		PHLDA1 (ENSAPLG00000002044)	NAP1L1 (ENSAPLG00000016178)	OSBPL8 (ENSAPLG00000016005) #8	ZDHHC17 (ENSAPLG00000014034) #9	ENSAPLG00000014346	E2F7 (ENSAPLG00000014506) #12	NAV3 (ENSAPLG00000014672) #14	ENSAPLG00000029309	SYT1 (ENSAPLG00000014912) #16	PAWR (ENSAPLG00000027740) #17	PPP1R12A (ENSAPLG00000015197) #18	RPS16 (ENSAPLG00000015907)	OTOGL (ENSAPLG00000015946) #19	ENSAPLG00000019979	PTPRQ (ENSAPLG00000016187) #20	MYF6 (ENSAPLG00000002254) #21	MYF5 (ENSAPLG00000001124) #22	ENSAPLG00000001136 #23	LIN7A (ENSAPLG00000017756) #23	ENSAPLG00000029393	RANGAP1 (ENSAPLG00000006767)	ZC3H7B (ENSAPLG00000005880)	TEF (ENSAPLG00000005838)	TOB2 (ENSAPLG00000023708)	PHF5A (ENSAPLG00000021195)	ACO2 (ENSAPLG00000005198)	POLR3H (ENSAPLG00000005063)	CSDC2 (ENSAPLG00000005057)	DESI1 (ENSAPLG00000016507)	XRCC6 (ENSAPLG00000004469)	SNU13 (ENSAPLG00000001022)
Pink-footed goose	MODERN SPECIES	36	PHLDA1 (ENSABRG00000002143)	NAP1L1 (ENSABRG00000002153)	BBS10 (ENSABRG00000002187) #7	OSBPL8 (ENSABRG00000002275) #8	ZDHHC17 (ENSABRG00000002383) #9	CSRP2 (ENSABRG00000002441) #10	E2F7 (ENSABRG00000002456) #12	NAV3 (ENSABRG00000002539) #14	ENSABRG00000002691	SYT1 (ENSABRG00000002806) #16	PAWR (ENSABRG00000002832) #17	PPP1R12A (ENSABRG00000002856) #18	RPS16 (ENSABRG00000002997)	OTOGL (ENSABRG00000003060) #19	PTPRQ (ENSABRG00000003711) #20	MYF6 (ENSABRG00000003882) #21	MYF5 (ENSABRG00000003896) #22	LIN7A (ENSABRG00000003928) #23	ENSABRG00000003943 #24	ENSABRG00000003973 ##25	CHADL (ENSABRG00000003979)	RANGAP1 (ENSABRG00000004047)	ZC3H7B (ENSABRG00000004538)	TEF (ENSABRG00000004576)	TOB2 (ENSABRG00000004605)	PHF5A (ENSABRG00000004614)	ACO2 (ENSABRG00000004640)	POLR3H (ENSABRG00000004688)	CSDC2 (ENSABRG00000004705)	PMM1 (ENSABRG00000004715)	DESI1 (ENSABRG00000004740)
Phasianidae	ANCESTRAL SPECIES		ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Japanese quail	MODERN SPECIES		PHLDA1 (ENSCJPG00005016153)	NAP1L1 (ENSCJPG00005016162)	BBS10 (ENSCJPG00005016163) #7	OSBPL8 (ENSCJPG00005016164) #8	ZDHHC17 (ENSCJPG00005016170) #9	CSRP2 (ENSCJPG00005016171) #10	E2F7 (ENSCJPG00005016173) #12	ENSCJPG00005016175	NAV3 (ENSCJPG00005016185) #14	SYT1 (ENSCJPG00005016211) #16	PAWR (ENSCJPG00005016216) #17	PPP1R12A (ENSCJPG00005016217) #18	RPS16 (ENSCJPG00005000776)	OTOGL (ENSCJPG00005000816) #19	PTPRQ (ENSCJPG00005001013) #20	MYF6 (ENSCJPG00005001103) #21	MYF5 (ENSCJPG00005001107) #22	LIN7A (ENSCJPG00005001112) #23	ACSS3 (ENSCJPG00005001150) #24	PPFIA2 (ENSCJPG00005001332) #25	CCDC59 (ENSCJPG00005004695) #27	METTL25 (ENSCJPG00005004697) #28	TMTC2 (ENSCJPG00005004705) #29	SLC6A15 (ENSCJPG00005004747) #30	ENSCJPG00005004764	ALX1 (ENSCJPG00005004774) #31	RASSF9 (ENSCJPG00005004777) #33	NTS (ENSCJPG00005004778) #34	MGAT4C (ENSCJPG00005004780) #35	C12orf50 (ENSCJPG00005004807) #36	C12orf29 (ENSCJPG00005004811) #37
Phasianidae_b	ANCESTRAL SPECIES	9	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417 #7	ENSGT00940000156622 #8	ENSGT00530000063074.b.b #9	ENSGT00940000154980 #10	ENSGT00940000157713 #12	ENSGT00940000158014 #14	ENSGT00940000155394 #16	ENSGT00390000000406 #17	ENSGT00940000156120.a #18	ENSGT00390000013067	ENSGT00940000160698 #19	ENSGT00940000159215 #20	ENSGT00950000182959.a.b.b.a #21	ENSGT00950000182959.a.a #22	ENSGT00940000153222.a.a #23	ENSGT00940000157479 #24	ENSGT01050000244900.a.a.a.a.b #25	ENSGT00390000006546 #27	ENSGT00530000063745.b #28	ENSGT00940000156144 #29	ENSGT00940000157277 #30	ENSGT00940000163725	ENSGT00940000163898	ENSGT00940000158251 #31	ENSGT00950000182839.A.c #33	ENSGT00640000091574 #34	ENSGT00940000155352 #35	ENSGT00920000149095.b #36
Turkey	MODERN SPECIES		KRR1 (ENSMGAG00000010844)	ENSMGAG00000010856	NAP1L1 (ENSMGAG00000010858)	OSBPL8 (ENSMGAG00000010890) #8	ZDHHC17 (ENSMGAG00000010911) #9	CSRP2 (ENSMGAG00000010931) #10	E2F7 (ENSMGAG00000010943) #12	NAV3 (ENSMGAG00000010956) #14	SYT1 (ENSMGAG00000011006) #16	PAWR (ENSMGAG00000011010) #17	PPP1R12A (ENSMGAG00000011011) #18	ENSMGAG00000011060	OTOGL (ENSMGAG00000011065) #19	PTPRQ (ENSMGAG00000011081) #20	ENSMGAG00000018753	MYF6 (ENSMGAG00000011091) #21	LIN7A (ENSMGAG00000011093) #23	ACSS3 (ENSMGAG00000011096) #24	ENSMGAG00000011103 #25	SLC6A15 (ENSMGAG00000011123) #30	TSPAN19 (ENSMGAG00000017647)	ENSMGAG00000011134	ALX1 (ENSMGAG00000011132) #31	RASSF9 (ENSMGAG00000011136) #33	NTS (ENSMGAG00000011142) #34	MGAT4C (ENSMGAG00000011146) #35	ENSMGAG00000015695 #36	C12orf29 (ENSMGAG00000011149) #37	CEP290 (ENSMGAG00000011158)	TMTC3 (ENSMGAG00000011193)	KITLG (ENSMGAG00000011203)
Chicken	MODERN SPECIES		KRR1 (ENSGALG00010012975)	PHLDA1 (ENSGALG00010014238)	NAP1L1 (ENSGALG00010013389)	BBS10 (ENSGALG00010013400) #7	OSBPL8 (ENSGALG00010013444) #8	ZDHHC17 (ENSGALG00010013476) #9	CSRP2 (ENSGALG00010013516) #10	E2F7 (ENSGALG00010013538) #12	NAV3 (ENSGALG00010013648) #14	SYT1 (ENSGALG00010012026) #16	PAWR (ENSGALG00010013283) #17	PPP1R12A (ENSGALG00010013333) #18	RPS16 (ENSGALG00010013358)	OTOGL (ENSGALG00010013364) #19	PTPRQ (ENSGALG00010012230) #20	MYF6 (ENSGALG00010012253) #21	MYF5 (ENSGALG00010012264) #22	ENSGALG00010012271 #23	ENSGALG00010014881 #23	ACSS3 (ENSGALG00010012337) #24	PPFIA2 (ENSGALG00010012450) #25	ENSGALG00010013569	CCDC59 (ENSGALG00010010017) #27	METTL25 (ENSGALG00010010042) #28	TMTC2 (ENSGALG00010011067) #29	SLC6A15 (ENSGALG00010011117) #30	TSPAN19 (ENSGALG00010011168)	ENSGALG00010011199	ALX1 (ENSGALG00010011243) #31	RASSF9 (ENSGALG00010011313) #33	NTS (ENSGALG00010011352) #34
Gnathostomata	ANCESTRAL SPECIES	742															ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310
Elephant shark	MODERN SPECIES	1518	ENSCMIG00000000541	KCNA10 (ENSCMIG00000000491)	ENSCMIG00000000480	KCNA3 (ENSCMIG00000000474)	zgc:194242 (ENSCMIG00000000465)	ENSCMIG00000000462	ETV7 (ENSCMIG00000000457)	ENSCMIG00000000450	slc25a55a (ENSCMIG00000000424)	stk38a (ENSCMIG00000000363)	KCTD20 (ENSCMIG00000000316)	srsf3 (ENSCMIG00000000280)	ENSCMIG00000000260	naxe (ENSCMIG00000000251)	adora1b (ENSCMIG00000000245)	myog (ENSCMIG00000000235) ##22	ppfia4 (ENSCMIG00000017690) ##25	tmem183a (ENSCMIG00000017564)	ENSCMIG00000017562 #35	oard1 (ENSCMIG00000017558)	apobec2b (ENSCMIG00000017554)	BAK1 (ENSCMIG00000017551)	ENSCMIG00000017548	rps10 (ENSCMIG00000017547)	pacsin1b (ENSCMIG00000017543)	SPDEF (ENSCMIG00000017538)	ilrun (ENSCMIG00000017534)	BLTP3A (ENSCMIG00000017530)	taf11 (ENSCMIG00000017523)	ANKS1A (ENSCMIG00000017510)	TCP11X2 (ENSCMIG00000017496)
Euteleostomi	ANCESTRAL SPECIES	19	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00940000154404.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00530000064489	ENSGT01060000250538	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000170563
Actinopterygii	ANCESTRAL SPECIES	36	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00940000154404.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00530000064489	ENSGT01060000250538	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000166133	ENSGT00390000003368	ENSGT00970000193609	ENSGT00940000165906	ENSGT00940000158152	ENSGT00940000164224	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00940000160210	ENSGT00940000158688	ENSGT00940000159534	ENSGT00550000074828.b	ENSGT00940000162211
Reedfish	MODERN SPECIES	11	ENSECRG00000006470	ENSECRG00000006486	ENSECRG00000006490	ENSECRG00000006501	ENSECRG00000006506	ENSECRG00000006515	ENSECRG00000006530	SAMD9 (ENSECRG00000006570)	ENSECRG00000006575	ENSECRG00000006583	ENSECRG00000006587	ap4b1 (ENSECRG00000006592)	dclre1b (ENSECRG00000006599)	adora1b (ENSECRG00000006605)	ENSECRG00000006610	myog (ENSECRG00000006615) ##22	ppfia4 (ENSECRG00000006635) ##25	ENSECRG00000006669	ENSECRG00000006673 #25	tmem183a (ENSECRG00000006678)	ENSECRG00000006683	ENSECRG00000006689 #35	ENSECRG00000006704	ENSECRG00000006720	slc5a8l (ENSECRG00000006732)	tshba (ENSECRG00000006790)	slc25a55b (ENSECRG00000006959)	tspan2a (ENSECRG00000006967)	ENSECRG00000006981	ENSECRG00000006983	ngfb (ENSECRG00000006989)
Neopterygii	ANCESTRAL SPECIES	79								ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000158175	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000166133	ENSGT00390000003368	ENSGT00970000193609	ENSGT00940000165906	ENSGT00940000158152	ENSGT00940000164224	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00940000160210	ENSGT00940000158688	ENSGT00940000159534	ENSGT00550000074828.b	ENSGT00940000162211
Osteoglossocephalai	ANCESTRAL SPECIES	80															ENSGT01100000263491.a.b.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Clupeocephala	ANCESTRAL SPECIES	92	ENSGT00940000162710.d	ENSGT00940000158161.e.a	ENSGT00940000156542.b	ENSGT00940000154395.a.a.a.a	ENSGT00400000022095.b	ENSGT00950000182981.b.f.b.a	ENSGT01030000234563.a.a.c.b.b	ENSGT00550000074958	ENSGT01030000234637.a.a.a.b	ENSGT00940000159736.b	ENSGT00440000038072.d	ENSGT00930000151052	ENSGT00940000156015	ENSGT00390000004581	ENSGT01100000263491.a.b.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Otomorpha	ANCESTRAL SPECIES	21	ENSGT00940000162710.d	ENSGT00940000158161.e.a	ENSGT00940000156542.b	ENSGT00940000154395.a.a.a.a	ENSGT00400000022095.b	ENSGT00950000182981.b.f.b.a	ENSGT01030000234563.a.a.c.b.b	ENSGT00550000074958	ENSGT01030000234637.a.a.a.b	ENSGT00940000159736.b	ENSGT00440000038072.d	ENSGT00930000151052	ENSGT00940000156015	ENSGT00390000004581	ENSGT01100000263491.a.b.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.l	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Otophysi	ANCESTRAL SPECIES	92	ENSGT00390000006896	ENSGT00920000149095 #36	ENSGT00940000162989.e	ENSGT00940000164703.a	ENSGT00940000157024.k.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000159692	ENSGT00390000014507.b	ENSGT00390000008827	ENSGT00940000180250	ENSGT00390000015805.a	ENSGT00940000154527.a.a.a	ENSGT00530000063539.a	ENSGT00940000161204	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.l	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Characiphysae	ANCESTRAL SPECIES	29	ENSGT00950000182986.a.a	ENSGT00390000006896	ENSGT00920000149095 #36	ENSGT00940000162989.e	ENSGT00940000164703.a	ENSGT00940000157024.k.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000159692	ENSGT00390000014507.b	ENSGT00940000180250	ENSGT00390000015805.a	ENSGT00940000154527.a.a.a	ENSGT00530000063539.a	ENSGT00940000161204	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.l	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Channel catfish	MODERN SPECIES	13	CNTN2 (ENSIPUG00000024553)	ENSIPUG00000024549	ENSIPUG00000024547	nfasc (ENSIPUG00000024535)	pik3c2b (ENSIPUG00000024516)	ppp1r15b (ENSIPUG00000024515)	PLEKHA6 (ENSIPUG00000024503)	golt1a (ENSIPUG00000024499)	ENSIPUG00000024498	ENSIPUG00000024495	optc (ENSIPUG00000024492)	atp2b4 (ENSIPUG00000024450)	mdm4 (ENSIPUG00000024447)	lrrn2 (ENSIPUG00000024446)	ENSIPUG00000024437	myog (ENSIPUG00000024431) ##22	ppfia4 (ENSIPUG00000024430) ##25	tmem183a (ENSIPUG00000024373)	tfeb (ENSIPUG00000024371)	mdfi (ENSIPUG00000024370)	foxp4 (ENSIPUG00000024328)	fam72a (ENSIPUG00000024279)	srgap2 (ENSIPUG00000024278)	ikbke (ENSIPUG00000024267)	rassf5 (ENSIPUG00000024261)	Dyrk2 (ENSIPUG00000024055)	Mapkapk2 (ENSIPUG00000024053)	il10 (ENSIPUG00000024051)	il19l (ENSIPUG00000024048)	Prelp (ENSIPUG00000024045)	zgc:113307 (ENSIPUG00000024044)
Characiphysae_b	ANCESTRAL SPECIES	26	ENSGT00390000006896	ENSGT00920000149095 #36	ENSGT00940000162989.e	ENSGT00940000164703.a	ENSGT00940000157024.k.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000159692	ENSGT00390000014507.b	ENSGT00940000180250	ENSGT00970000198224	ENSGT00390000015805.a	ENSGT00940000154527.a.a.a	ENSGT00530000063539.a	ENSGT00940000161204	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.l	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Characoidei	ANCESTRAL SPECIES	15	ENSGT00940000162989.f.a.a.k.b	ENSGT00940000162989.f.a.a.k.a	ENSGT00940000162989.e	ENSGT00940000164703.a	ENSGT00940000157024.k.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000159692	ENSGT00390000014507.b	ENSGT00940000180250	ENSGT00970000198224	ENSGT00390000015805.a	ENSGT00940000154527.a.a.a	ENSGT00530000063539.a	ENSGT00940000161204	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.l	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Red-bellied piranha	MODERN SPECIES	34	nfasca (ENSPNAG00000012881)	PIK3C2B (ENSPNAG00000002367)	ENSPNAG00000002306	PLEKHA6 (ENSPNAG00000012557)	GOLT1A (ENSPNAG00000012401)	ENSPNAG00000002232	ENSPNAG00000012312	csf1a (ENSPNAG00000012294)	optc (ENSPNAG00000012270)	atp2b4 (ENSPNAG00000012229)	mdm4 (ENSPNAG00000012078)	LRRN2 (ENSPNAG00000002083)	ENSPNAG00000012051	ENSPNAG00000012030	ENSPNAG00000012012	myog (ENSPNAG00000002045) ##22	ppfia4 (ENSPNAG00000011943) ##25	tmem183a (ENSPNAG00000011684)	tfeb (ENSPNAG00000011624)	ENSPNAG00000011579	foxp4 (ENSPNAG00000011573)	ENSPNAG00000001775	zgc:101564 (ENSPNAG00000011505)	srgap2 (ENSPNAG00000011481)
Mexicana tetra	MODERN SPECIES	14	nfasca (ENSAMXG00000009970)	ENSAMXG00000042827	PIK3C2B (ENSAMXG00000010065)	ENSAMXG00000043831	PLEKHA6 (ENSAMXG00000010119)	GOLT1A (ENSAMXG00000043507)	ENSAMXG00000042094	csf1a (ENSAMXG00000036298)	ENSAMXG00000030780	optc (ENSAMXG00000039686)	ENSAMXG00000043337	atp2b4 (ENSAMXG00000007448)	mdm4 (ENSAMXG00000029959)	LRRN2 (ENSAMXG00000025181)	ENSAMXG00000007441	myog (ENSAMXG00000041063) ##22	ppfia4 (ENSAMXG00000007380) ##25	tmem183a (ENSAMXG00000035114)	tfeb (ENSAMXG00000007343)	ENSAMXG00000007336	ENSAMXG00000040051	foxp4 (ENSAMXG00000007304)	zgc:101564 (ENSAMXG00000036558)	srgap2 (ENSAMXG00000007282)	ikbke (ENSAMXG00000007271)	RASSF5 (ENSAMXG00000036315)	dyrk3 (ENSAMXG00000007263)	mapkapk2a (ENSAMXG00000044014)	il10 (ENSAMXG00000029145)	il19l (ENSAMXG00000007239)	PRELP (ENSAMXG00000038615)
Electric eel	MODERN SPECIES	351												atp2b4 (ENSEEEG00000018410)	mdm4 (ENSEEEG00000018483)	LRRN2 (ENSEEEG00000018486)	ENSEEEG00000018488	myog (ENSEEEG00000018490) ##22	ppfia4 (ENSEEEG00000018504) ##25	tmem183a (ENSEEEG00000018570)	tfeb (ENSEEEG00000018574)	foxp4 (ENSEEEG00000018575)
Cyprinoidei	ANCESTRAL SPECIES	23	ENSGT00940000162989.f.a.a.e.b	ENSGT00940000162989.f.a.a.e.a	ENSGT00940000161149.f	ENSGT00940000164703.a	ENSGT00940000157024.k.a	ENSGT00940000158263	ENSGT00940000154404.b	ENSGT00940000159692	ENSGT00390000014507.b	ENSGT00940000180250	ENSGT00390000015805.a	ENSGT00940000154527.a.a.a	ENSGT00530000063539.a	ENSGT00940000161204	ENSGT01100000263491.a.b.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.l	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	104	ENSGT00940000162989.f.a.a.e.a.b	ENSGT00940000162989.e.v.b.a	ENSGT00940000164703.a.a	ENSGT00940000157024.k.a.a	ENSGT00940000158263.e	ENSGT00940000154404.b.j.a	ENSGT00940000159692.e	ENSGT00390000014507.b.j	ENSGT00940000180250	ENSGT00390000015805.a.b	ENSGT00940000157574.f.b	ENSGT00940000154527.a.a.a.o	ENSGT00530000063539.a.ub	ENSGT00940000161204.h	ENSGT01100000263491.a.b.a.b.a.a	ENSGT00950000182959.a.b.b.b.a ##22	ENSGT01050000244900.a.a.a.a.a.l ##25	ENSGT00390000009310.z	ENSGT00940000159691.i	ENSGT00940000160187.b	ENSGT00940000158700.a	ENSGT00390000005106.k	ENSGT00950000182824.a.a.b.b.a	ENSGT00950000182937.B.a.e	ENSGT00940000159288.c	ENSGT00940000159878.c	ENSGT00940000157261.l.b	ENSGT00950000183124.A.e.a	ENSGT00950000183124.C.c	ENSGT00940000160163.c	ENSGT00940000158177.a.a
Goldfish	MODERN SPECIES	29	chia.1 (ENSCARG00000012993)	cntn2 (ENSCARG00000013056)	ENSCARG00000017378	nfasca (ENSCARG00000017635)	PIK3C2B (ENSCARG00000024898)	ENSCARG00000025240	PLEKHA6 (ENSCARG00000025307)	GOLT1A (ENSCARG00000025531)	ENSCARG00000025546	csf1a (ENSCARG00000025558)	optc (ENSCARG00000025575)	atp2b4 (ENSCARG00000025609)	mdm4 (ENSCARG00000025705)	LRRN2 (ENSCARG00000025741)	ENSCARG00000025742	myog (ENSCARG00000025748) ##22	ppfia4 (ENSCARG00000025803) ##25	tmem183a (ENSCARG00000026676)	tfeb (ENSCARG00000026731)	ENSCARG00000026755	foxp4 (ENSCARG00000026795)	zgc:101564 (ENSCARG00000027170)	srgap2 (ENSCARG00000027206)	RASSF5 (ENSCARG00000027584)	dyrk3 (ENSCARG00000027607)	mapkapk2a (ENSCARG00000027698)	il10 (ENSCARG00000028938)	il19l (ENSCARG00000028967)	PRELP (ENSCARG00000028975)	zgc:113307 (ENSCARG00000028981)	fmoda (ENSCARG00000028990)
Cyprininae_a	ANCESTRAL SPECIES	3	ENSGT00940000162989.f.a.a.e.a.b	ENSGT00940000162989.e.v.b.a	ENSGT00940000164703.a.a	ENSGT00940000157024.k.a.a	ENSGT00940000158263.e	ENSGT00940000154404.b.j.a	ENSGT00940000159692.e	ENSGT00390000014507.b.j	ENSGT00940000180250.b	ENSGT00390000015805.a.b	ENSGT00940000157574.f.b	ENSGT00940000154527.a.a.a.o	ENSGT00530000063539.a.ub	ENSGT00940000161204.h	ENSGT01100000263491.a.b.a.b.a.a	ENSGT00950000182959.a.b.b.b.a ##22	ENSGT01050000244900.a.a.a.a.a.l ##25	ENSGT00390000009310.z	ENSGT00940000159691.i	ENSGT00940000160187.b	ENSGT00940000158700.a	ENSGT00390000005106.k	ENSGT00950000182824.a.a.b.b.a	ENSGT00950000182937.B.a.e	ENSGT00940000159288.c	ENSGT00940000159878.c	ENSGT00940000157261.l.b	ENSGT00950000183124.A.e.a	ENSGT00950000183124.C.c	ENSGT00940000160163.c	ENSGT00940000158177.a.a
Common carp reference	MODERN SPECIES	42	GOLT1A (ENSCCRG00000080039)	csf1a (ENSCCRG00000018049)	optc (ENSCCRG00000026905)	ENSCCRG00000054034	atp2b4 (ENSCCRG00000026794)	mdm4 (ENSCCRG00000057229)	ENSCCRG00000036709	ENSCCRG00000036663	ENSCCRG00000037238	ENSCCRG00000068716	ENSCCRG00000054374	ENSCCRG00000077160	ENSCCRG00000061844	ENSCCRG00000055339	si:ch211-86h15.1 (ENSCCRG00000073580)	myog (ENSCCRG00000068079) ##22	ppfia4 (ENSCCRG00000071380) ##25	tmem183a (ENSCCRG00000057482)	tfeb (ENSCCRG00000031918)	ENSCCRG00000070324	foxp4 (ENSCCRG00000025138)	zgc:101564 (ENSCCRG00000074850)	srgap2 (ENSCCRG00000044861)	ikbke (ENSCCRG00000045071)	RASSF5 (ENSCCRG00000056830)	dyrk3 (ENSCCRG00000067331)	mapkapk2a (ENSCCRG00000063236)	il10 (ENSCCRG00000020358)	il19l (ENSCCRG00000020353)	ENSCCRG00000020349	fmoda (ENSCCRG00000020344)
Golden-line barbel	MODERN SPECIES	1	zc3h11a (ENSSGRG00000039320) #36	ENSSGRG00000039335	chia.2 (ENSSGRG00000040312)	ENSSGRG00000040315	cntn2 (ENSSGRG00000040337)	nfasca (ENSSGRG00000041470)	PIK3C2B (ENSSGRG00000045490)	ENSSGRG00000046030	PLEKHA6 (ENSSGRG00000046031)	GOLT1A (ENSSGRG00000046046)	ENSSGRG00000046048	csf1a (ENSSGRG00000046052)	atp2b4 (ENSSGRG00000046055)	mdm4 (ENSSGRG00000046059)	ENSSGRG00000046064	myog (ENSSGRG00000046066) ##22	ppfia4 (ENSSGRG00000046076) ##25	tmem183a (ENSSGRG00000046104)	tfeb (ENSSGRG00000046105)	ENSSGRG00000046106	foxp4 (ENSSGRG00000046107)	zgc:101564 (ENSSGRG00000046109)	srgap2 (ENSSGRG00000046111)	ikbke (ENSSGRG00000046121)	RASSF5 (ENSSGRG00000046177)	dyrk3 (ENSSGRG00000046179)	mapkapk2a (ENSSGRG00000046181)	il10 (ENSSGRG00000046204)	il19l (ENSSGRG00000046206)	PRELP (ENSSGRG00000046207)	zgc:113307 (ENSSGRG00000046208)
Cyprininae	ANCESTRAL SPECIES	17	ENSGT00940000162989.e.v.a.b	ENSGT00940000162989.f.a.a.e.b.a	ENSGT00940000162989.f.a.a.e.a.a	ENSGT00940000162989.e.v.b.b	ENSGT00940000164703.a.b	ENSGT00940000157024.k.a.b	ENSGT00940000158263.f	ENSGT00940000154404.b.j.b	ENSGT00940000159692.f	ENSGT00390000014507.b.i	ENSGT00390000015805.a.a	ENSGT00940000157574.f.a	ENSGT00940000154527.a.a.a.n	ENSGT00530000063539.a.vb	ENSGT00940000161204.g	ENSGT00950000182959.a.b.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a.k ##25	ENSGT00390000009310.`b	ENSGT00940000159691.j	ENSGT00940000160187.a	ENSGT00940000158700.b	ENSGT00390000005106.l	ENSGT00950000182824.a.a.b.b.b	ENSGT00950000182937.B.a.f	ENSGT00940000159288.d	ENSGT00940000159878.d	ENSGT00940000157261.l.a	ENSGT00950000183124.A.e.b	ENSGT00950000183124.C.d	ENSGT00940000160163.d	ENSGT00940000158177.a.b
Goldfish	MODERN SPECIES	2	zc3h11a (ENSCARG00000021953) #36	ENSCARG00000021967	ENSCARG00000022153	ENSCARG00000022192	cntn2 (ENSCARG00000022339)	nfasca (ENSCARG00000024763)	PIK3C2B (ENSCARG00000026809)	ENSCARG00000027198	PLEKHA6 (ENSCARG00000027249)	csf1a (ENSCARG00000027791)	GOLT1A (ENSCARG00000027837)	optc (ENSCARG00000027848)	atp2b4 (ENSCARG00000027880)	mdm4 (ENSCARG00000028036)	LRRN2 (ENSCARG00000028053)	myog (ENSCARG00000028061) ##22	ppfia4 (ENSCARG00000028204) ##25	tmem183a (ENSCARG00000031917)	tfeb (ENSCARG00000031931)	ENSCARG00000031993	foxp4 (ENSCARG00000032067)	zgc:101564 (ENSCARG00000032458)	srgap2 (ENSCARG00000032519)	ikbke (ENSCARG00000033003)	RASSF5 (ENSCARG00000033048)	gfDYRK3 (ENSCARG00000033063)	mapkapk2a (ENSCARG00000033130)	il10 (ENSCARG00000033715)	ENSCARG00000033741	PRELP (ENSCARG00000033773)	ENSCARG00000033784
Cyprininae_a	ANCESTRAL SPECIES	9	ENSGT00940000162989.f.a.a.e.a.a	ENSGT00940000162989.e.v.b.b	ENSGT00940000164703.a.b	ENSGT00940000157024.k.a.b	ENSGT00940000158263.f	ENSGT00940000154404.b.j.b	ENSGT00940000159692.f	ENSGT00390000014507.b.i	ENSGT00940000180250.a	ENSGT00390000015805.a.a	ENSGT00940000157574.f.a	ENSGT00940000154527.a.a.a.n	ENSGT00530000063539.a.vb	ENSGT00940000161204.g	ENSGT00940000162678	ENSGT00950000182959.a.b.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a.k ##25	ENSGT00390000009310.`b	ENSGT00940000159691.j	ENSGT00940000160187.a	ENSGT00940000158700.b	ENSGT00390000005106.l	ENSGT00950000182824.a.a.b.b.b	ENSGT00950000182937.B.a.f	ENSGT00940000159288.d	ENSGT00940000159878.d	ENSGT00940000157261.l.a	ENSGT00950000183124.A.e.b	ENSGT00950000183124.C.d	ENSGT00940000160163.d	ENSGT00940000158177.a.b
Common carp reference	MODERN SPECIES	13	chia.3 (ENSCCRG00000074395)	chia.2 (ENSCCRG00000073801)	ENSCCRG00000056312	cntn2 (ENSCCRG00000022069)	nfasca (ENSCCRG00000004990)	PIK3C2B (ENSCCRG00000024602)	ENSCCRG00000003472	GOLT1A (ENSCCRG00000003449)	ENSCCRG00000080162	csf1a (ENSCCRG00000003377)	optc (ENSCCRG00000016449)	atp2b4 (ENSCCRG00000016194)	mdm4 (ENSCCRG00000016186)	ENSCCRG00000063198	ENSCCRG00000041866	myog (ENSCCRG00000016063) ##22	ppfia4 (ENSCCRG00000061879) ##25	tmem183a (ENSCCRG00000003185)	tfeb (ENSCCRG00000034741)	ENSCCRG00000075549	foxp4 (ENSCCRG00000043836)	zgc:101564 (ENSCCRG00000061267)	srgap2 (ENSCCRG00000037585)	ikbke (ENSCCRG00000037352)	RASSF5 (ENSCCRG00000082840)	dyrk3 (ENSCCRG00000054155)	mapkapk2a (ENSCCRG00000062136)	il19l (ENSCCRG00000028494)	ENSCCRG00000028493	zgc:113307 (ENSCCRG00000028491)	fmoda (ENSCCRG00000057559)
Golden-line barbel	MODERN SPECIES	124															ENSSGRG00000022136	myog (ENSSGRG00000022137) ##22	ppfia4 (ENSSGRG00000022157) ##25	tfeb (ENSSGRG00000022610)	ENSSGRG00000022611	foxp4 (ENSSGRG00000022623)	ENSSGRG00000024037	zgc:101564 (ENSSGRG00000024040)	srgap2 (ENSSGRG00000024045)	ikbke (ENSSGRG00000024409)	RASSF5 (ENSSGRG00000024444)	dyrk3 (ENSSGRG00000024450)	mapkapk2a (ENSSGRG00000024467)	il10 (ENSSGRG00000024589)	il19l (ENSSGRG00000024596)	PRELP (ENSSGRG00000024598)	zgc:113307 (ENSSGRG00000024600)
Zebrafish	MODERN SPECIES	2	chia.3 (ENSDARG00000009612)	chia.2 (ENSDARG00000099185)	chia.1 (ENSDARG00000100635)	cntn2 (ENSDARG00000000472)	nfasca (ENSDARG00000061099)	PIK3C2B (ENSDARG00000086927)	ENSDARG00000102574	PLEKHA6 (ENSDARG00000020328)	GOLT1A (ENSDARG00000088933)	kiss1 (ENSDARG00000075829)	csf1a (ENSDARG00000075343)	optc (ENSDARG00000014358)	atp2b4 (ENSDARG00000044902)	mdm4 (ENSDARG00000057513)	si:ch211-86h15.1 (ENSDARG00000074098)	myog (ENSDARG00000009438) ##22	ppfia4 (ENSDARG00000053205) ##25	tmem183a (ENSDARG00000044899)	tfeb (ENSDARG00000010794)	MDFI (ENSDARG00000089564)	foxp4 (ENSDARG00000076120)	FAM72B (ENSDARG00000070621)	ENSDARG00000112164	srgap2 (ENSDARG00000032161)	ikbke (ENSDARG00000070606)	RASSF5 (ENSDARG00000070601)	dyrk3 (ENSDARG00000070600)	mapkapk2a (ENSDARG00000002552)	il10 (ENSDARG00000078147)	il19l (ENSDARG00000090344)	PRELP (ENSDARG00000070597)
Clupeiformes	ANCESTRAL SPECIES	151																ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.l	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Atlantic herring	MODERN SPECIES	21	npepl1 (ENSCHAG00000009212)	ENSCHAG00000009200	ctsz (ENSCHAG00000009119)	nelfcd (ENSCHAG00000008753)	ENSCHAG00000008741	ENSCHAG00000008726	mon1a (ENSCHAG00000008722)	ENSCHAG00000008627	ENSCHAG00000008556	camkvb (ENSCHAG00000008371)	SEMA3F (ENSCHAG00000002507)	ENSCHAG00000002190	uroc1 (ENSCHAG00000001574)	ENSCHAG00000001519	ENSCHAG00000001495	myog (ENSCHAG00000001471) ##22	ppfia4 (ENSCHAG00000001137) ##25	tmem183a (ENSCHAG00000000798)	ENSCHAG00000023034	MDFI (ENSCHAG00000023022)	foxp4 (ENSCHAG00000022959)	zgc:101564 (ENSCHAG00000022938)	srgap2 (ENSCHAG00000021891)	ikbke (ENSCHAG00000021716)	RASSF5 (ENSCHAG00000021702)	dyrk3 (ENSCHAG00000021690)	zgc:113307 (ENSCHAG00000021634)	MAPKAPK2 (ENSCHAG00000021388)	il10 (ENSCHAG00000021377)	il19l (ENSCHAG00000021347)	PRELP (ENSCHAG00000021339)
Denticle herring	MODERN SPECIES	3	ENSDCDG00000021359	SLC6A17 (ENSDCDG00000021365)	ENSDCDG00000021373	strip1 (ENSDCDG00000021378)	AHCYL1 (ENSDCDG00000021397)	nfya (ENSDCDG00000021856)	sort1a (ENSDCDG00000021892)	psma5 (ENSDCDG00000023264)	sypl2a (ENSDCDG00000023268)	atxn7l2a (ENSDCDG00000023270)	cyb561d1 (ENSDCDG00000023273)	ENSDCDG00000023277	USP48 (ENSDCDG00000023316)	LDLRAD2 (ENSDCDG00000024992)	mdm4 (ENSDCDG00000024994)	myog (ENSDCDG00000024998) ##22	ppfia4 (ENSDCDG00000025140) ##25	ENSDCDG00000030269	tmem183a (ENSDCDG00000030272)	tfeb (ENSDCDG00000030280)	MDFI (ENSDCDG00000030286)	foxp4 (ENSDCDG00000030321)	zgc:101564 (ENSDCDG00000030708)	srgap2 (ENSDCDG00000030796)	ikbke (ENSDCDG00000032808)	RASSF5 (ENSDCDG00000032811)	dyrk3 (ENSDCDG00000032813)	MAPKAPK2 (ENSDCDG00000032818)	ENSDCDG00000032827	ENSDCDG00000032876	PRELP (ENSDCDG00000032878)
Euteleosteomorpha	ANCESTRAL SPECIES	24	ENSGT00940000158759	ENSGT00390000012818	ENSGT00940000153675.a.a.b	ENSGT00940000159654	ENSGT00390000006113	ENSGT00940000160929	ENSGT00530000063882.a	ENSGT00860000133842.m	ENSGT00940000155203.b	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Protacanthopterygii	ANCESTRAL SPECIES	3	ENSGT00940000153675.a.a.a.b	ENSGT00940000159654	ENSGT00390000006113	ENSGT00940000160929	ENSGT00530000063882.a	ENSGT00860000133842.m	ENSGT00940000155203.b	ENSGT00940000165359.b	ENSGT00940000165359.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00940000160679	ENSGT00440000033870.a.b	ENSGT01090000260431	ENSGT00390000014309	ENSGT00940000156759.a.b.b	ENSGT00390000001231	ENSGT00940000157867.a.a	ENSGT00940000156971.B.a	ENSGT00940000158496	ENSGT00390000006238
Salmoninae	ANCESTRAL SPECIES	3	ENSGT00940000159654.fb.b	ENSGT00390000006113	ENSGT00940000160929	ENSGT00530000063882.a	ENSGT00860000133842.m	ENSGT00940000165359.b	ENSGT00940000165359.a	ENSGT00940000155203.b	ENSGT00940000158192	ENSGT00940000160817	ENSGT00510000049583.l	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a.u.a ##25	ENSGT00390000009310.db	ENSGT00940000159691.k.a	ENSGT00940000160187.c.b	ENSGT00940000158700	ENSGT00940000160679.c	ENSGT00440000033870.a.b.a	ENSGT00390000014309.g	ENSGT00940000156759.a.b.b.c	ENSGT00390000001231.e	ENSGT00940000157867.a.a.c.b	ENSGT00390000006238.ob	ENSGT00510000046803.a.t.b	ENSGT00560000077335.p.a	ENSGT00940000163190.g.b.c
Salmoninae_a	ANCESTRAL SPECIES	25	ENSGT00390000012818.e.a	ENSGT00940000153675.a.b.a	ENSGT00940000159654.fb.b	ENSGT00390000006113	ENSGT00940000160929	ENSGT00530000063882.a	ENSGT00860000133842.m	ENSGT00940000155203.b	ENSGT00940000158192.`b	ENSGT00940000160817	ENSGT00510000049583.l	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a.u.a ##25	ENSGT00390000009310.db	ENSGT00940000159691.k.a	ENSGT00940000160187.c.b	ENSGT00940000158700	ENSGT00940000160679.c	ENSGT00440000033870.a.b.a	ENSGT00390000014309.g.a	ENSGT00940000156759.a.b.b.c	ENSGT00390000001231.e	ENSGT00390000014309.g.b	ENSGT00940000157867.a.a.c.b	ENSGT00940000156971.B.a.d.a	ENSGT00940000158496.h	ENSGT00390000006238.pb.a
Oncorhynchus	ANCESTRAL SPECIES	5	ENSGT00940000159654.fb.b	ENSGT00390000006113	ENSGT00940000160929	ENSGT00530000063882.a	ENSGT00860000133842.m	ENSGT00940000155203.b	ENSGT00940000158192.`b	ENSGT00940000165359.b	ENSGT00940000165359.a	ENSGT00940000158192.ab	ENSGT00510000049583.l	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a.u.a ##25	ENSGT00390000009310.db	ENSGT00940000159691.k.a	ENSGT00940000160187.c.b	ENSGT00940000158700.c.b	ENSGT00940000160679.c	ENSGT00440000033870.a.b.a	ENSGT00390000014309.g.b	ENSGT00940000156759.a.b.b.c	ENSGT00390000001231.e	ENSGT00940000157867.a.a.c.b	ENSGT00940000156971.B.a.d.a	ENSGT00940000158496.h	ENSGT00390000006238.pb.a	ENSGT00510000046803.a.t.b
Oncorhynchus_a	ANCESTRAL SPECIES	4	ENSGT00940000158759.j	ENSGT00390000012818.e.a	ENSGT00940000153675.a.b.a	ENSGT00940000159654.fb.b	ENSGT00390000006113	ENSGT00940000160929	ENSGT00530000063882.a	ENSGT00860000133842.m	ENSGT00940000155203.b	ENSGT00940000158192.`b	ENSGT00510000049583.l	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a.u.a ##25	ENSGT00390000009310.db	ENSGT00940000159691.k.a	ENSGT00940000160187.c.b	ENSGT00940000158700.c.b	ENSGT00940000160679.c	ENSGT00440000033870.a.b.a	ENSGT00390000014309.g.b	ENSGT00940000156759.a.b.b.c	ENSGT00390000001231.e	ENSGT00940000157867.a.a.c.b	ENSGT00940000156971.B.a.d.a	ENSGT00940000158496.h	ENSGT00390000006238.pb.a	ENSGT00510000046803.a.t.b
Chinook salmon	MODERN SPECIES	31	snrpe (ENSOTSG00005001013)	ENSOTSG00005001008	cdc42 (ENSOTSG00005001002)	wnt4 (ENSOTSG00005000926)	svbp (ENSOTSG00005000914)	fbxo2 (ENSOTSG00005000907)	PHF13 (ENSOTSG00005000900)	DNAJC11 (ENSOTSG00005000877)	CAMTA1 (ENSOTSG00005000853)	VAMP3 (ENSOTSG00005000842)	uts2b (ENSOTSG00005000837)	mxra8a (ENSOTSG00005000831)	psma5 (ENSOTSG00005000827)	sort1a (ENSOTSG00005000736)	mdm4 (ENSOTSG00005000726)	myog (ENSOTSG00005000725) ##22	ppfia4 (ENSOTSG00005000720) ##25	tmem183a (ENSOTSG00005028747)	ENSOTSG00005028744	ENSOTSG00005028739	ENSOTSG00005028732	ENSOTSG00005028731	ENSOTSG00005028716	ENSOTSG00005028703	nsrp1 (ENSOTSG00005028696)	ENSOTSG00005028691	ENSOTSG00005028689	coro6 (ENSOTSG00005028688)	dnajc3b (ENSOTSG00005028687)	tram1 (ENSOTSG00005028686)	tas1r3 (ENSOTSG00005028685)
Coho salmon	MODERN SPECIES	25	snrpe (ENSOKIG00005015427)	cdc42 (ENSOKIG00005015406)	wnt4 (ENSOKIG00005015323)	svbp (ENSOKIG00005015295)	fbxo2 (ENSOKIG00005015286)	PHF13 (ENSOKIG00005015277)	DNAJC11 (ENSOKIG00005015146)	ENSOKIG00005015130	ENSOKIG00005015114	VAMP3 (ENSOKIG00005015094)	ENSOKIG00005015077	mxra8a (ENSOKIG00005015057)	psma5 (ENSOKIG00005015046)	sort1a (ENSOKIG00005014837)	mdm4 (ENSOKIG00005014819)	myog (ENSOKIG00005014799) ##22	ppfia4 (ENSOKIG00005014172) ##25	tmem183a (ENSOKIG00005014078)	tfeb (ENSOKIG00005014038)	ENSOKIG00005014028	foxp4 (ENSOKIG00005048195)	tas1r3 (ENSOKIG00005048183)	errfi1a (ENSOKIG00005048182)	pax7a (ENSOKIG00005048096)	park7 (ENSOKIG00005048074)	mrps16 (ENSOKIG00005048071)	MRPS16 (ENSOKIG00005048068)	KCNAB2 (ENSOKIG00005048049)	MRTO4 (ENSOKIG00005047966)	IFFO2 (ENSOKIG00005047961)	aldh4a1 (ENSOKIG00005046929)
Rainbow trout	MODERN SPECIES	28	svbp (ENSOMYG00000070754)	fbxo2 (ENSOMYG00000029814)	PHF13 (ENSOMYG00000029803)	DNAJC11 (ENSOMYG00000029723)	ENSOMYG00000064011	ENSOMYG00000053759	CAMTA1 (ENSOMYG00000029624)	VAMP3 (ENSOMYG00000029581)	uts2b (ENSOMYG00000029539)	ENSOMYG00000029494	ENSOMYG00000017578	ENSOMYG00000029450	ENSOMYG00000069433	ENSOMYG00000029372	mdm4 (ENSOMYG00000029162)	myog (ENSOMYG00000029149) ##22	ppfia4 (ENSOMYG00000029043) ##25	tmem183a (ENSOMYG00000028864)	tfeb (ENSOMYG00000028821)	ENSOMYG00000049373	ENSOMYG00000028770	ENSOMYG00000070460	ENSOMYG00000028739	ENSOMYG00000064230	ENSOMYG00000028726	mrps16 (ENSOMYG00000028710)	pax7a (ENSOMYG00000028604)	park7 (ENSOMYG00000028484)	ENSOMYG00000028451	ENSOMYG00000065510	ENSOMYG00000028436
Salmo	ANCESTRAL SPECIES	6	ENSGT00940000153675.a.b.a	ENSGT00940000159654.fb.b	ENSGT00390000006113	ENSGT00940000160929	ENSGT00530000063882.a	ENSGT00860000133842.m	ENSGT00940000155203.b	ENSGT00940000165359.a	ENSGT00940000158192.`b	ENSGT00940000160817	ENSGT00510000049583.l	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a.u.a ##25	ENSGT00390000009310.db	ENSGT00940000159691.k.a.a	ENSGT01060000253626	ENSGT00940000160187.c.b	ENSGT00940000158700	ENSGT00940000160679.c	ENSGT00440000033870.a.b.a	ENSGT00390000014309.g.a	ENSGT00940000156759.a.b.b.c	ENSGT00390000001231.e	ENSGT00390000014309.g.b	ENSGT00940000157867.a.a.c.b	ENSGT00940000156971.B.a.d.a	ENSGT00940000158496.h
River trout	MODERN SPECIES	7	cdc42 (ENSSTUG00000003783)	wnt4 (ENSSTUG00000003814)	ENSSTUG00000003889	svbp (ENSSTUG00000003892)	fbxo2 (ENSSTUG00000003905)	PHF13 (ENSSTUG00000003917)	DNAJC11 (ENSSTUG00000003969)	CAMTA1 (ENSSTUG00000004487)	vamp3 (ENSSTUG00000004498)	per3 (ENSSTUG00000004514)	uts2b (ENSSTUG00000004551)	mxra8a (ENSSTUG00000004581)	psma5 (ENSSTUG00000004610)	sort1a (ENSSTUG00000004650)	mdm4 (ENSSTUG00000005714)	myog (ENSSTUG00000005721) ##22	ppfia4 (ENSSTUG00000005786) ##25	tmem183a (ENSSTUG00000007331)	ENSSTUG00000007341	ENSSTUG00000007352	ENSSTUG00000007358	foxp4 (ENSSTUG00000007396)	ENSSTUG00000008806	tas1r3 (ENSSTUG00000008808)	errfi1a (ENSSTUG00000008842)	mrps16 (ENSSTUG00000008857)	pax7a (ENSSTUG00000008874)	park7 (ENSSTUG00000009170)	KCNAB2 (ENSSTUG00000009186)	mrps16 (ENSSTUG00000009253)	MEGF6 (ENSSTUG00000009271)
Atlantic salmon	MODERN SPECIES	14	ENSSSAG00000102861	fbxo2 (ENSSSAG00000084563)	PHF13 (ENSSSAG00000118443)	ENSSSAG00000087404	ENSSSAG00000105986	DNAJC11 (ENSSSAG00000077761)	ENSSSAG00000101369	ENSSSAG00000077731	ENSSSAG00000098099	ENSSSAG00000077714	PER3 (ENSSSAG00000077674)	uts2b (ENSSSAG00000077669)	ENSSSAG00000077663	ENSSSAG00000077660	ENSSSAG00000077252	ENSSSAG00000086669 ##22	tmem183a (ENSSSAG00000097594)	ppfia4 (ENSSSAG00000074325) ##25	tfeb (ENSSSAG00000074212)	ENSSSAG00000122256	ENSSSAG00000084948	foxp4 (ENSSSAG00000072458)	ENSSSAG00000106440	ENSSSAG00000072411	errfi (ENSSSAG00000072410)	mrps16 (ENSSSAG00000072407)	pax7a (ENSSSAG00000064587)	park7 (ENSSSAG00000071756)	ENSSSAG00000071753	ENSSSAG00000071733	ENSSSAG00000071679
Huchen	DUPLICATION
Huchen	MODERN SPECIES	1316							DNAJC11 (ENSHHUG00000002742)	ENSHHUG00000002524	VAMP3 (ENSHHUG00000002497)	ENSHHUG00000002473	mxra8a (ENSHHUG00000002463)	ENSHHUG00000002442	psma5 (ENSHHUG00000002362)	sort1a (ENSHHUG00000002321)	mdm4 (ENSHHUG00000002311)	myog (ENSHHUG00000002285) ##22	ppfia4 (ENSHHUG00000001758) ##25	tmem183a (ENSHHUG00000001752)	tfeb (ENSHHUG00000001698)
Huchen	MODERN SPECIES	4466																myog (ENSHHUG00000047805) ##22	PPFIA4 (ENSHHUG00000047818) ##25
Northern pike	MODERN SPECIES	16	snrpe (ENSELUG00000026835)	ENSELUG00000012390	ENSELUG00000000454	wnt4 (ENSELUG00000012344)	svbp (ENSELUG00000012304)	fbxo2 (ENSELUG00000012321)	PHF13 (ENSELUG00000012294)	DNAJC11 (ENSELUG00000012267)	ENSELUG00000012183	VAMP3 (ENSELUG00000024962)	ENSELUG00000012117	ENSELUG00000012086	mhc2dgb (ENSELUG00000009450)	psma5 (ENSELUG00000011933)	mdm4 (ENSELUG00000011889)	myog (ENSELUG00000011859) ##22	ppfia4 (ENSELUG00000011814) ##25	tmem183a (ENSELUG00000011742)	tfeb (ENSELUG00000011723)	ENSELUG00000011713	foxp4 (ENSELUG00000011699)	tas1r3 (ENSELUG00000011677)	errfi1a (ENSELUG00000000418)	mrps16 (ENSELUG00000031976)	pax7a (ENSELUG00000001415)	ENSELUG00000034266	park7 (ENSELUG00000011551)	KCNAB2 (ENSELUG00000011457)	MEGF6 (ENSELUG00000011373)	akr7a3 (ENSELUG00000011168)	mrto4 (ENSELUG00000026390)
Acanthomorphata	ANCESTRAL SPECIES	6										ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Euacanthomorphacea	ANCESTRAL SPECIES	1	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Percomorphaceae	ANCESTRAL SPECIES	1	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Tiger tail seahorse	MODERN SPECIES	295	ENSHCOG00000009493	ADORA1 (ENSHCOG00000009476)	ENSHCOG00000009460	gnl3 (ENSHCOG00000009446)	glt8d1 (ENSHCOG00000009430)	spcs1 (ENSHCOG00000009405)	ENSHCOG00000009398	CAMK1 (ENSHCOG00000009384)	ccdc3b (ENSHCOG00000009358)	VAMP3 (ENSHCOG00000009330)	per3 (ENSHCOG00000009320)	mxra8a (ENSHCOG00000009235)	psma5 (ENSHCOG00000009188)	sort1a (ENSHCOG00000009158)	mdm4 (ENSHCOG00000008924)	myog (ENSHCOG00000008900) ##22	ppfia4 (ENSHCOG00000008863) ##25	tmem183a (ENSHCOG00000008410)	tfeb (ENSHCOG00000008379)	ENSHCOG00000008302	foxp4 (ENSHCOG00000008292)	zgc:101564 (ENSHCOG00000008244)	srgap2 (ENSHCOG00000008231)	ikbke (ENSHCOG00000000269)	ENSHCOG00000008167	RASSF5 (ENSHCOG00000008157)	dyrk3 (ENSHCOG00000000733)	MAPKAPK2 (ENSHCOG00000008146)	ENSHCOG00000008112	ENSHCOG00000008078	PRELP (ENSHCOG00000008049)
Percomorphaceae_B	ANCESTRAL SPECIES	3	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Percomorphaceae_C	ANCESTRAL SPECIES	1	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Percomorphaceae_D	ANCESTRAL SPECIES	3	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Carangaria	ANCESTRAL SPECIES	3	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Pleuronectoidei	ANCESTRAL SPECIES	4	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Turbot	MODERN SPECIES	18	ENSSMAG00000035151	ENSSMAG00000006698	ENSSMAG00000026345	gnl3 (ENSSMAG00000006662)	ENSSMAG00000006652	spcs1 (ENSSMAG00000006641)	ENSSMAG00000006628	ENSSMAG00000006586	ENSSMAG00000006610	ENSSMAG00000006551	ccdc3b (ENSSMAG00000006532)	ENSSMAG00000006463	nek4 (ENSSMAG00000006452)	ENSSMAG00000006369	mdm4 (ENSSMAG00000006348)	myog (ENSSMAG00000006335) ##22	ppfia4 (ENSSMAG00000006153) ##25	tmem183a (ENSSMAG00000006126)	tfeb (ENSSMAG00000006104)	ENSSMAG00000021714	foxp4 (ENSSMAG00000006053)	zgc:101564 (ENSSMAG00000006039)	srgap2 (ENSSMAG00000005994)	ikbke (ENSSMAG00000005962)	RASSF5 (ENSSMAG00000005835)	dyrk3 (ENSSMAG00000005817)	MAPKAPK2 (ENSSMAG00000005790)	il10 (ENSSMAG00000005780)	il19l (ENSSMAG00000005734)	ENSSMAG00000005725	ENSSMAG00000005718
Tongue sole	MODERN SPECIES	2	ENSCSEG00000004759	tpra1 (ENSCSEG00000004756)	chchd6b (ENSCSEG00000004751)	ENSCSEG00000004739	ENSCSEG00000004737	ENSCSEG00000004725	LSM14B (ENSCSEG00000004722)	ENSCSEG00000004718	ENSCSEG00000004715	bmp7a (ENSCSEG00000004712)	rae1 (ENSCSEG00000004706)	RBM38 (ENSCSEG00000004701)	psma5 (ENSCSEG00000004690)	sort1a (ENSCSEG00000004676)	mdm4 (ENSCSEG00000004669)	myog (ENSCSEG00000004665) ##22	ppfia4 (ENSCSEG00000004589) ##25	tmem183a (ENSCSEG00000004576)	tfeb (ENSCSEG00000004566)	ENSCSEG00000004559	foxp4 (ENSCSEG00000004532)	zgc:101564 (ENSCSEG00000004524)	srgap2 (ENSCSEG00000004520)	ikbke (ENSCSEG00000004513)	RASSF5 (ENSCSEG00000004510)	dyrk3 (ENSCSEG00000004506)	MAPKAPK2 (ENSCSEG00000004500)	il10 (ENSCSEG00000004496)	il19l (ENSCSEG00000004487)	PRELP (ENSCSEG00000004481)	zgc:113307 (ENSCSEG00000004476)
Carangaria_A	ANCESTRAL SPECIES	7	ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Seriola	ANCESTRAL SPECIES	10	ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Greater amberjack	MODERN SPECIES	37	ADORA1 (ENSSDUG00000000936)	ENSSDUG00000000955	gnl3 (ENSSDUG00000000972)	glt8d1 (ENSSDUG00000001010)	spcs1 (ENSSDUG00000001037)	nek4 (ENSSDUG00000001055)	CAMK1 (ENSSDUG00000001078)	ccdc3b (ENSSDUG00000001090)	VAMP3 (ENSSDUG00000001117)	per3 (ENSSDUG00000001160)	mxra8a (ENSSDUG00000001232)	ENSSDUG00000001267	psma5 (ENSSDUG00000001798)	sort1a (ENSSDUG00000001832)	mdm4 (ENSSDUG00000001864)	myog (ENSSDUG00000001886) ##22	ppfia4 (ENSSDUG00000001905) ##25	tmem183a (ENSSDUG00000001970)	tfeb (ENSSDUG00000002007)	ENSSDUG00000002057	foxp4 (ENSSDUG00000002085)	zgc:101564 (ENSSDUG00000002121)	srgap2 (ENSSDUG00000002142)	ikbke (ENSSDUG00000002235)	RASSF5 (ENSSDUG00000002261)	dyrk3 (ENSSDUG00000002282)	MAPKAPK2 (ENSSDUG00000002299)	il10 (ENSSDUG00000002330)	il19l (ENSSDUG00000002357)	PRELP (ENSSDUG00000002392)	zgc:113307 (ENSSDUG00000002418)
Yellowtail amberjack	MODERN SPECIES	3054	ENSSLDG00000008755	ENSSLDG00000008743	gnl3 (ENSSLDG00000008692)	glt8d1 (ENSSLDG00000008675)	spcs1 (ENSSLDG00000008657)	nek4 (ENSSLDG00000008613)	CAMK1 (ENSSLDG00000008546)	ccdc3b (ENSSLDG00000008516)	VAMP3 (ENSSLDG00000008498)	per3 (ENSSLDG00000008423)	ENSSLDG00000007706	mxra8a (ENSSLDG00000007536)	psma5 (ENSSLDG00000007517)	sort1a (ENSSLDG00000007421)	mdm4 (ENSSLDG00000007382)	myog (ENSSLDG00000007368) ##22	ppfia4 (ENSSLDG00000007292) ##25	tmem183a (ENSSLDG00000007235)	tfeb (ENSSLDG00000007182)	ENSSLDG00000007159	ENSSLDG00000007124	ENSSLDG00000007107	zgc:101564 (ENSSLDG00000007088)	srgap2 (ENSSLDG00000007036)	ikbke (ENSSLDG00000006734)	RASSF5 (ENSSLDG00000006640)	dyrk3 (ENSSLDG00000006612)	MAPKAPK2 (ENSSLDG00000006571)	il10 (ENSSLDG00000006467)	il19l (ENSSLDG00000006451)	PRELP (ENSSLDG00000006430)
Barramundi perch	MODERN SPECIES	339	cpne5b (ENSLCAG00010011727)	ADORA1 (ENSLCAG00010011799)	ENSLCAG00010011801	gnl3 (ENSLCAG00010011811)	glt8d1 (ENSLCAG00010011841)	spcs1 (ENSLCAG00010011846)	nek4 (ENSLCAG00010011854)	CAMK1 (ENSLCAG00010011878)	ccdc3b (ENSLCAG00010011904)	VAMP3 (ENSLCAG00010011911)	per3 (ENSLCAG00010011922)	mxra8a (ENSLCAG00010011952)	psma5 (ENSLCAG00010011958)	sort1a (ENSLCAG00010011979)	mdm4 (ENSLCAG00010011986)	myog (ENSLCAG00010011991) ##22	ppfia4 (ENSLCAG00010012005) ##25	tmem183a (ENSLCAG00010012015)	tfeb (ENSLCAG00010012023)	ENSLCAG00010012034
Anabantaria	ANCESTRAL SPECIES		ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Zig-zag eel	MODERN SPECIES	19	ENSMAMG00000008927	ENSMAMG00000028498	gnl3 (ENSMAMG00000008904)	glt8d1 (ENSMAMG00000008882)	spcs1 (ENSMAMG00000008837)	nek4 (ENSMAMG00000008810)	ENSMAMG00000008750	ccdc3b (ENSMAMG00000008720)	ENSMAMG00000025420	ENSMAMG00000008565	ENSMAMG00000008529	ENSMAMG00000008487	ENSMAMG00000008466	ENSMAMG00000008446	mdm4 (ENSMAMG00000008432)	myog (ENSMAMG00000008419) ##22	ppfia4 (ENSMAMG00000008339) ##25	tmem183a (ENSMAMG00000008297)	tfeb (ENSMAMG00000008271)	ENSMAMG00000008248	foxp4 (ENSMAMG00000008161)	zgc:101564 (ENSMAMG00000008142)	srgap2 (ENSMAMG00000008035)	ikbke (ENSMAMG00000007952)	RASSF5 (ENSMAMG00000007930)	dyrk3 (ENSMAMG00000007908)	MAPKAPK2 (ENSMAMG00000007885)	il10 (ENSMAMG00000007873)	il19l (ENSMAMG00000007852)	ENSMAMG00000007840	zgc:113307 (ENSMAMG00000007819)
Anabantoidei	ANCESTRAL SPECIES	1	ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Siamese fighting fish	MODERN SPECIES	16	cpne5b (ENSBSLG00000011475)	ADORA1 (ENSBSLG00000012920)	ENSBSLG00000012929	gnl3 (ENSBSLG00000012933)	glt8d1 (ENSBSLG00000012946)	spcs1 (ENSBSLG00000012965)	nek4 (ENSBSLG00000012970)	CAMK1 (ENSBSLG00000012979)	ccdc3b (ENSBSLG00000013025)	VAMP3 (ENSBSLG00000013028)	per3 (ENSBSLG00000013174)	ENSBSLG00000013424	ENSBSLG00000013454	ENSBSLG00000013528	mdm4 (ENSBSLG00000013743)	myog (ENSBSLG00000013757) ##22	ppfia4 (ENSBSLG00000013764) ##25	tmem183a (ENSBSLG00000013881)	tfeb (ENSBSLG00000013908)	ENSBSLG00000013937	foxp4 (ENSBSLG00000013955)	zgc:101564 (ENSBSLG00000014023)	srgap2 (ENSBSLG00000014158)	ikbke (ENSBSLG00000014577)	RASSF5 (ENSBSLG00000014671)	dyrk3 (ENSBSLG00000014754)	MAPKAPK2 (ENSBSLG00000014769)	il10 (ENSBSLG00000015056)	il19l (ENSBSLG00000015178)	PRELP (ENSBSLG00000015257)	ENSBSLG00000015312
Climbing perch	MODERN SPECIES	18	cpne5b (ENSATEG00000024233)	ENSATEG00000024238	ENSATEG00000024241	gnl3 (ENSATEG00000024242)	glt8d1 (ENSATEG00000024247)	spcs1 (ENSATEG00000028514)	nek4 (ENSATEG00000024250)	ENSATEG00000024260	ccdc3b (ENSATEG00000024272)	VAMP3 (ENSATEG00000024274)	ENSATEG00000024276	ENSATEG00000024283	ENSATEG00000024286	ENSATEG00000024289	mdm4 (ENSATEG00000024297)	myog (ENSATEG00000024301) ##22	ppfia4 (ENSATEG00000024310) ##25	tmem183a (ENSATEG00000024316)	tfeb (ENSATEG00000024321)	ENSATEG00000024325	foxp4 (ENSATEG00000024327)	FAM72B (ENSATEG00000026159)	srgap2 (ENSATEG00000024337)	ikbke (ENSATEG00000024348)	RASSF5 (ENSATEG00000024354)	dyrk3 (ENSATEG00000024355)	MAPKAPK2 (ENSATEG00000024357)	il10 (ENSATEG00000024359)	il19l (ENSATEG00000024362)	ENSATEG00000024364	zgc:113307 (ENSATEG00000024366)
Eupercaria	ANCESTRAL SPECIES		ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Tetraodontidae	ANCESTRAL SPECIES	1	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Tetraodon	MODERN SPECIES	2	gnl3 (ENSTNIG00000007263)	glt8d1 (ENSTNIG00000007264)	spcs1 (ENSTNIG00000007265)	ENSTNIG00000007267	nek4 (ENSTNIG00000007266)	CAMK1 (ENSTNIG00000007268)	eef2k (ENSTNIG00000007270)	ENSTNIG00000007269	ccdc3b (ENSTNIG00000007271)	ENSTNIG00000007272	per3 (ENSTNIG00000007273)	mxra8a (ENSTNIG00000007274)	psma5 (ENSTNIG00000007275)	sort1a (ENSTNIG00000007276)	mdm4 (ENSTNIG00000007277)	myog (ENSTNIG00000007278) ##22	ppfia4 (ENSTNIG00000007279) ##25	tmem183a (ENSTNIG00000007280)	tfeb (ENSTNIG00000007281)	ENSTNIG00000007282	foxp4 (ENSTNIG00000007283)	zgc:101564 (ENSTNIG00000007284)	srgap2 (ENSTNIG00000007285)	ikbke (ENSTNIG00000007286)	RASSF5 (ENSTNIG00000000937)	dyrk3 (ENSTNIG00000007287)	MAPKAPK2 (ENSTNIG00000007288)	il10 (ENSTNIG00000007289)	il19l (ENSTNIG00000000268)	PRELP (ENSTNIG00000007290)	fmoda (ENSTNIG00000007291)
Fugu	MODERN SPECIES	10	cpne5b (ENSTRUG00000006293)	ADORA1 (ENSTRUG00000005994)	ENSTRUG00000025285	gnl3 (ENSTRUG00000005552)	glt8d1 (ENSTRUG00000005186)	spcs1 (ENSTRUG00000031398)	nek4 (ENSTRUG00000004941)	CAMK1 (ENSTRUG00000004534)	ccdc3b (ENSTRUG00000024925)	vamp3 (ENSTRUG00000032264)	per3 (ENSTRUG00000003219)	mxra8a (ENSTRUG00000002364)	psma5 (ENSTRUG00000001922)	sort1a (ENSTRUG00000001762)	mdm4 (ENSTRUG00000023689)	myog (ENSTRUG00000001200) ##22	ppfia4 (ENSTRUG00000000776) ##25	tmem183a (ENSTRUG00000000580)	tfeb (ENSTRUG00000022428)	ENSTRUG00000032829	foxp4 (ENSTRUG00000000892)	zgc:101564 (ENSTRUG00000001354)	srgap2 (ENSTRUG00000001407)	ikbke (ENSTRUG00000032034)	RASSF5 (ENSTRUG00000029672)	dyrk3 (ENSTRUG00000019715)	MAPKAPK2 (ENSTRUG00000025138)	il10 (ENSTRUG00000019604)	il19l (ENSTRUG00000004610)	PRELP (ENSTRUG00000021776)	zgc:113307 (ENSTRUG00000004773)
Eupecaria_A	ANCESTRAL SPECIES		ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Ballan wrasse	MODERN SPECIES	66	ENSLBEG00000011361	ENSLBEG00000011372	gnl3 (ENSLBEG00000011394)	glt8d1 (ENSLBEG00000011428)	spcs1 (ENSLBEG00000011458)	nek4 (ENSLBEG00000011549)	CAMK1 (ENSLBEG00000011700)	ccdc3b (ENSLBEG00000011735)	ENSLBEG00000011760	per3 (ENSLBEG00000011813)	mxra8a (ENSLBEG00000011870)	psma5 (ENSLBEG00000011899)	sort1a (ENSLBEG00000011925)	mdm4 (ENSLBEG00000011955)	dnali1 (ENSLBEG00000011981)	myog (ENSLBEG00000012020) ##22	ppfia4 (ENSLBEG00000012170) ##25	tmem183a (ENSLBEG00000012342)	tfeb (ENSLBEG00000012390)	ENSLBEG00000012427	foxp4 (ENSLBEG00000012490)	zgc:101564 (ENSLBEG00000012579)	srgap2 (ENSLBEG00000012621)	ikbke (ENSLBEG00000012699)	RASSF5 (ENSLBEG00000012778)	dyrk3 (ENSLBEG00000012817)	MAPKAPK2 (ENSLBEG00000012856)	ENSLBEG00000012892	il10 (ENSLBEG00000012906)	ENSLBEG00000012951	il19l (ENSLBEG00000013083)
Eupecaria_B	ANCESTRAL SPECIES	2	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Eupecaria_C	ANCESTRAL SPECIES		ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a.d	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES		ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00940000157448	ENSGT00390000018321	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a.d	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Large yellow croaker	MODERN SPECIES	478	stab1 (ENSLCRG00005019537)	ccdc71 (ENSLCRG00005019518)	ENSLCRG00005019505	pdhb (ENSLCRG00005019282)	FLNB (ENSLCRG00005009064)	ENSLCRG00005007704	dennd6aa (ENSLCRG00005007493)	ENSLCRG00005007462	ENSLCRG00005007419	per3 (ENSLCRG00005006596)	mxra8a (ENSLCRG00005006508)	mxra8a (ENSLCRG00005006458)	psma5 (ENSLCRG00005006394)	sort1a (ENSLCRG00005006247)	mdm4 (ENSLCRG00005006154)	myog (ENSLCRG00005006143) ##22	ppfia4 (ENSLCRG00005006012) ##25	tmem183a (ENSLCRG00005005924)	tfeb (ENSLCRG00005005908)	ENSLCRG00005005873	foxp4 (ENSLCRG00005005757)	zgc:101564 (ENSLCRG00005005698)	srgap2 (ENSLCRG00005005188)	ikbke (ENSLCRG00005005073)	ENSLCRG00005005033	dyrk3 (ENSLCRG00005005012)	il10 (ENSLCRG00005004999)	MAPKAPK2 (ENSLCRG00005004919)	il19l (ENSLCRG00005004882)	PRELP (ENSLCRG00005004878)	zgc:113307 (ENSLCRG00005004875)
European seabass	MODERN SPECIES	10	ENSDLAG00005018866	ENSDLAG00005034562	ENSDLAG00005034952	ENSDLAG00005018895	nek4 (ENSDLAG00005018948)	spcs1 (ENSDLAG00005018939)	ENSDLAG00005019005	ccdc3b (ENSDLAG00005032781)	ENSDLAG00005030536	ENSDLAG00005020421	ENSDLAG00005020764	ENSDLAG00005020772	ENSDLAG00005020780	ENSDLAG00005020869	ppfia4 (ENSDLAG00005020894) ##25	myog (ENSDLAG00005020877) ##22	tmem183a (ENSDLAG00005021069)	tfeb (ENSDLAG00005000489)	ENSDLAG00005031308	foxp4 (ENSDLAG00005000527)	srgap2 (ENSDLAG00005000574)	zgc:101564 (ENSDLAG00005030586)	ikbke (ENSDLAG00005000629)	RASSF5 (ENSDLAG00005030227)	dyrk3 (ENSDLAG00005000674)	MAPKAPK2 (ENSDLAG00005000688)	il10 (ENSDLAG00005030039)	il19l (ENSDLAG00005000745)	ENSDLAG00005027348	zgc:113307 (ENSDLAG00005000749)	fmoda (ENSDLAG00005000754)
Gilthead seabream	MODERN SPECIES	20	cpne5b (ENSSAUG00010013737)	ADORA1 (ENSSAUG00010013730)	ENSSAUG00010013728	gnl3 (ENSSAUG00010013725)	glt8d1 (ENSSAUG00010013719)	spcs1 (ENSSAUG00010013716)	nek4 (ENSSAUG00010013715)	CAMK1 (ENSSAUG00010011592)	ccdc3b (ENSSAUG00010011556)	VAMP3 (ENSSAUG00010011555)	per3 (ENSSAUG00010011519)	mxra8a (ENSSAUG00010011512)	PSMA5 (ENSSAUG00010011510)	sort1a (ENSSAUG00010010652)	mdm4 (ENSSAUG00010010642)	myog (ENSSAUG00010010641) ##22	ppfia4 (ENSSAUG00010009217) ##25	tmem183a (ENSSAUG00010009160)	tfeb (ENSSAUG00010009155)	ENSSAUG00010009152	foxp4 (ENSSAUG00010008791)	zgc:101564 (ENSSAUG00010008781)	srgap2 (ENSSAUG00010006761)	ikbke (ENSSAUG00010006736)	RASSF5 (ENSSAUG00010006727)	dyrk3 (ENSSAUG00010006725)	MAPKAPK2 (ENSSAUG00010005907)	il10 (ENSSAUG00010005901)	ENSSAUG00010005900	ENSSAUG00010005899	il19l (ENSSAUG00010005898)
Perciformes	ANCESTRAL SPECIES		ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Perciformes_a	ANCESTRAL SPECIES	5	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Pike perch	MODERN SPECIES	11	cpne5b (ENSSLUG00000013499)	ADORA1 (ENSSLUG00000013472)	ENSSLUG00000013469	gnl3 (ENSSLUG00000013454)	glt8d1 (ENSSLUG00000013440)	spcs1 (ENSSLUG00000013429)	nek4 (ENSSLUG00000013427)	CAMK1 (ENSSLUG00000011648)	ccdc3b (ENSSLUG00000011565)	VAMP3 (ENSSLUG00000011560)	per3 (ENSSLUG00000011504)	mxra8a (ENSSLUG00000011487)	psma5 (ENSSLUG00000011478)	sort1a (ENSSLUG00000010239)	mdm4 (ENSSLUG00000010190)	myog (ENSSLUG00000010185) ##22	ppfia4 (ENSSLUG00000007304) ##25	tmem183a (ENSSLUG00000007143)	tfeb (ENSSLUG00000007122)	MDFI (ENSSLUG00000007112)	foxp4 (ENSSLUG00000007010)	zgc:101564 (ENSSLUG00000006977)	srgap2 (ENSSLUG00000006081)	ikbke (ENSSLUG00000006017)	RASSF5 (ENSSLUG00000005998)	dyrk3 (ENSSLUG00000005987)	MAPKAPK2 (ENSSLUG00000005856)	il10 (ENSSLUG00000005822)	il19l (ENSSLUG00000005810)	PRELP (ENSSLUG00000005800)	zgc:113307 (ENSSLUG00000005793)
Channel bull blenny	MODERN SPECIES	19	ENSCGOG00000006495	ADORA1 (ENSCGOG00000006496)	ENSCGOG00000006498	gnl3 (ENSCGOG00000006499)	glt8d1 (ENSCGOG00000006510)	spcs1 (ENSCGOG00000006514)	nek4 (ENSCGOG00000006517)	CAMK1 (ENSCGOG00000006541)	ccdc3b (ENSCGOG00000007905)	VAMP3 (ENSCGOG00000007908)	ENSCGOG00000007911	mxra8a (ENSCGOG00000007918)	psma5 (ENSCGOG00000007933)	sort1a (ENSCGOG00000008072)	mdm4 (ENSCGOG00000008832)	myog (ENSCGOG00000008839) ##22	ppfia4 (ENSCGOG00000009028) ##25	tmem183a (ENSCGOG00000013051)	tfeb (ENSCGOG00000013066)	ENSCGOG00000013080	foxp4 (ENSCGOG00000013098)	zgc:101564 (ENSCGOG00000013705)	srgap2 (ENSCGOG00000013772)	ikbke (ENSCGOG00000015509)	RASSF5 (ENSCGOG00000016026)	dyrk3 (ENSCGOG00000016030)	MAPKAPK2 (ENSCGOG00000016045)	il10 (ENSCGOG00000016824)	il19l (ENSCGOG00000016834)	PRELP (ENSCGOG00000016836)	zgc:113307 (ENSCGOG00000016837)
Cottioidei	ANCESTRAL SPECIES		ENSGT00940000176117	ENSGT00390000018096	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Lumpfish	MODERN SPECIES	20	camk1ga (ENSCLMG00005007289)	ENSCLMG00005007472	ENSCLMG00005007473	G0S2 (ENSCLMG00005007474)	LDLRAD2 (ENSCLMG00005007475)	nampt2 (ENSCLMG00005007487)	ENSCLMG00005008243	ENSCLMG00005008244	fezf2 (ENSCLMG00005008245)	ENSCLMG00005008247	PTPRG (ENSCLMG00005008248)	PTPRG (ENSCLMG00005008250)	ENSCLMG00005008251	psma5 (ENSCLMG00005008252)	mdm4 (ENSCLMG00005008255)	myog (ENSCLMG00005008256) ##22	ENSCLMG00005008257 ##25	ppfia4 (ENSCLMG00005008258) ##25	tmem183a (ENSCLMG00005008259)	tfeb (ENSCLMG00005008260)	MDFI (ENSCLMG00005008261)	foxp4 (ENSCLMG00005008262)	zgc:101564 (ENSCLMG00005008264)	srgap2 (ENSCLMG00005008280)	ikbke (ENSCLMG00005009384)	RASSF5 (ENSCLMG00005009385)	dyrk3 (ENSCLMG00005009386)	MAPKAPK2 (ENSCLMG00005009388)	il10 (ENSCLMG00005009817)	il19l (ENSCLMG00005009818)	PRELP (ENSCLMG00005009820)
Stickleback	MODERN SPECIES	281			ADORA1 (ENSGACG00000000302)	ENSGACG00000000307	gnl3 (ENSGACG00000000309)	glt8d1 (ENSGACG00000000312)	spcs1 (ENSGACG00000000313)	nek4 (ENSGACG00000000316)	CAMK1 (ENSGACG00000000319)	ccdc3b (ENSGACG00000000327)	VAMP3 (ENSGACG00000000329)	mxra8a (ENSGACG00000000331)	psma5 (ENSGACG00000000332)	sort1a (ENSGACG00000000340)	mdm4 (ENSGACG00000000347)	myog (ENSGACG00000000349) ##22	ppfia4 (ENSGACG00000000353) ##25	tmem183a (ENSGACG00000000357)	tfeb (ENSGACG00000000364)	foxp4 (ENSGACG00000000367)	zgc:101564 (ENSGACG00000000371)	srgap2 (ENSGACG00000000374)	ENSGACG00000000375	ikbke (ENSGACG00000000376)	RASSF5 (ENSGACG00000000383)	dyrk3 (ENSGACG00000000385)	MAPKAPK2 (ENSGACG00000000388)	il19l (ENSGACG00000000393)	PRELP (ENSGACG00000000397)	fmoda (ENSGACG00000000399)	slc6a14 (ENSGACG00000000404)
Ovalentaria	ANCESTRAL SPECIES	2	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Ovalentaria_B	ANCESTRAL SPECIES	5	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Cichlidae	ANCESTRAL SPECIES	1	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	4	ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	2	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.b	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Haplochromini	ANCESTRAL SPECIES	1	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320.s	ENSGT00940000158320.t	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.b	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Burton s mouthbrooder	MODERN SPECIES	336										VAMP3 (ENSHBUG00000006641)	per3 (ENSHBUG00000006626)	mxra8a (ENSHBUG00000006613)	psma5 (ENSHBUG00000006595)	sort1a (ENSHBUG00000006537)	mdm4 (ENSHBUG00000006517)	myog (ENSHBUG00000006286) ##22	ppfia4 (ENSHBUG00000006490) ##25	tmem183a (ENSHBUG00000006273)	tfeb (ENSHBUG00000006246)	ENSHBUG00000006234	foxp4 (ENSHBUG00000006218)	zgc:101564 (ENSHBUG00000006175)	srgap2 (ENSHBUG00000006152)	ikbke (ENSHBUG00000006077)	RASSF5 (ENSHBUG00000006052)	dyrk3 (ENSHBUG00000006022)	MAPKAPK2 (ENSHBUG00000005997)	il10 (ENSHBUG00000000148)	il19l (ENSHBUG00000005950)	PRELP (ENSHBUG00000005923)	zgc:113307 (ENSHBUG00000005880)
Haplochromini_A	ANCESTRAL SPECIES		ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320.s	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.b	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a.e.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
P. nyererei	MODERN SPECIES	387										VAMP3 (ENSPNYG00000017682)	per3 (ENSPNYG00000017700)	mxra8a (ENSPNYG00000017762)	psma5 (ENSPNYG00000017784)	sort1a (ENSPNYG00000017828)	mdm4 (ENSPNYG00000017875)	myog (ENSPNYG00000017885) ##22	ppfia4 (ENSPNYG00000017895) ##25	tmem183a (ENSPNYG00000017953)	tfeb (ENSPNYG00000017988)	ENSPNYG00000018002	foxp4 (ENSPNYG00000018024)	zgc:101564 (ENSPNYG00000018077)	srgap2 (ENSPNYG00000018123)	ikbke (ENSPNYG00000018221)	RASSF5 (ENSPNYG00000018249)	dyrk3 (ENSPNYG00000018269)	MAPKAPK2 (ENSPNYG00000018290)	il10 (ENSPNYG00000018336)	il19l (ENSPNYG00000018459)	PRELP (ENSPNYG00000018486)	zgc:113307 (ENSPNYG00000018506)
Haplochromini_B	ANCESTRAL SPECIES		ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320.s	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.b	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a.e.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Eastern happy	MODERN SPECIES	17	cpne5b (ENSACLG00000007450)	ADORA1 (ENSACLG00000007432)	ENSACLG00000007425	gnl3 (ENSACLG00000007381)	glt8d1 (ENSACLG00000007359)	spcs1 (ENSACLG00000007351)	nek4 (ENSACLG00000007334)	CAMK1 (ENSACLG00000007267)	ccdc3b (ENSACLG00000007260)	taar10a (ENSACLG00000007248)	VAMP3 (ENSACLG00000006583)	per3 (ENSACLG00000006505)	mxra8a (ENSACLG00000006486)	sort1a (ENSACLG00000006404)	mdm4 (ENSACLG00000006393)	myog (ENSACLG00000006387) ##22	ENSACLG00000006381	ppfia4 (ENSACLG00000006353) ##25	tmem183a (ENSACLG00000006332)	tfeb (ENSACLG00000006320)	ENSACLG00000006308	foxp4 (ENSACLG00000006260)	zgc:101564 (ENSACLG00000005692)	srgap2 (ENSACLG00000005589)	ikbke (ENSACLG00000005565)	RASSF5 (ENSACLG00000005550)	dyrk3 (ENSACLG00000005527)	MAPKAPK2 (ENSACLG00000005513)	il10 (ENSACLG00000005426)	il19l (ENSACLG00000005373)	PRELP (ENSACLG00000005360)
Zebra mbuna	MODERN SPECIES	1108	DNAJC16 (ENSMZEG00005026997)	b3galt6 (ENSMZEG00005026998)	tmem167b (ENSMZEG00005026999)	ENSMZEG00005027000	MAPK14 (ENSMZEG00005027001)	srpk1b (ENSMZEG00005000055)	LHFPL5 (ENSMZEG00005000078)	ENSMZEG00005000090	VAMP3 (ENSMZEG00005000145)	ENSMZEG00005000184	ENSMZEG00005000256	mxra8a (ENSMZEG00005000310)	psma5 (ENSMZEG00005000324)	sort1a (ENSMZEG00005000388)	mdm4 (ENSMZEG00005000402)	myog (ENSMZEG00005000620) ##22	ppfia4 (ENSMZEG00005000426) ##25	tmem183a (ENSMZEG00005000632)	tfeb (ENSMZEG00005000676)	ENSMZEG00005000691	foxp4 (ENSMZEG00005000699)	zgc:101564 (ENSMZEG00005000767)	srgap2 (ENSMZEG00005000788)	ikbke (ENSMZEG00005000873)	RASSF5 (ENSMZEG00005000891)	dyrk3 (ENSMZEG00005000920)	MAPKAPK2 (ENSMZEG00005000948)	il10 (ENSMZEG00005000985)	il19l (ENSMZEG00005001009)	PRELP (ENSMZEG00005001079)	zgc:113307 (ENSMZEG00005001109)
Lyretail cichlid	MODERN SPECIES	296	ADORA1 (ENSNBRG00000013258)	ENSNBRG00000013246	gnl3 (ENSNBRG00000013161)	glt8d1 (ENSNBRG00000013111)	spcs1 (ENSNBRG00000013100)	ENSNBRG00000013089	CAMK1 (ENSNBRG00000013059)	ccdc3b (ENSNBRG00000013033)	TAAR1 (ENSNBRG00000013018)	VAMP3 (ENSNBRG00000012994)	per3 (ENSNBRG00000012934)	mxra8a (ENSNBRG00000012907)	psma5 (ENSNBRG00000012888)	sort1a (ENSNBRG00000012736)	mdm4 (ENSNBRG00000012687)	myog (ENSNBRG00000012677) ##22	ppfia4 (ENSNBRG00000012612) ##25	tmem183a (ENSNBRG00000012585)	tfeb (ENSNBRG00000012563)	ENSNBRG00000012543	foxp4 (ENSNBRG00000012513)	zgc:101564 (ENSNBRG00000012497)	srgap2 (ENSNBRG00000012452)	ikbke (ENSNBRG00000012388)	RASSF5 (ENSNBRG00000012373)	dyrk3 (ENSNBRG00000012352)	MAPKAPK2 (ENSNBRG00000012311)	il10 (ENSNBRG00000012218)	il19l (ENSNBRG00000012163)	PRELP (ENSNBRG00000012140)	zgc:113307 (ENSNBRG00000012131)
Nile tilapia	MODERN SPECIES	17	ADORA1 (ENSONIG00000031348)	ENSONIG00000040241	ENSONIG00000019339	gnl3 (ENSONIG00000019335)	glt8d1 (ENSONIG00000019334)	spcs1 (ENSONIG00000030499)	nek4 (ENSONIG00000019332)	CAMK1 (ENSONIG00000019329)	ccdc3b (ENSONIG00000019327)	VAMP3 (ENSONIG00000019326)	per3 (ENSONIG00000019320)	mxra8a (ENSONIG00000019318)	psma5 (ENSONIG00000019317)	sort1a (ENSONIG00000019316)	mdm4 (ENSONIG00000019315)	myog (ENSONIG00000027855) ##22	ppfia4 (ENSONIG00000019308) ##25	tmem183a (ENSONIG00000019307)	tfeb (ENSONIG00000019306)	ENSONIG00000019305	foxp4 (ENSONIG00000019299)	zgc:101564 (ENSONIG00000019298)	srgap2 (ENSONIG00000019295)	ikbke (ENSONIG00000019294)	RASSF5 (ENSONIG00000040816)	dyrk3 (ENSONIG00000034879)	ENSONIG00000029186	MAPKAPK2 (ENSONIG00000019291)	ENSONIG00000019290	il19l (ENSONIG00000019288)	PRELP (ENSONIG00000019287)
Midas cichlid	MODERN SPECIES	887					gnl3 (ENSACIG00000000545)	glt8d1 (ENSACIG00000000509)	spcs1 (ENSACIG00000000492)	ENSACIG00000000483	CAMK1 (ENSACIG00000000448)	ccdc3b (ENSACIG00000000421)	VAMP3 (ENSACIG00000000387)	per3 (ENSACIG00000000318)	mxra8a (ENSACIG00000000296)	psma5 (ENSACIG00000000259)	mdm4 (ENSACIG00000000179)	myog (ENSACIG00000023192) ##22	ENSACIG00000023173 ##25	ENSACIG00000023168 ##25	tmem183a (ENSACIG00000023158)	tfeb (ENSACIG00000023140)	MDFI (ENSACIG00000023131)	foxp4 (ENSACIG00000023116)	zgc:101564 (ENSACIG00000023107)	srgap2 (ENSACIG00000023096)	ikbke (ENSACIG00000023082)	RASSF5 (ENSACIG00000023070)	dyrk3 (ENSACIG00000023063)	MAPKAPK2 (ENSACIG00000023055)	il10 (ENSACIG00000022987)	il19l (ENSACIG00000022955)	PRELP (ENSACIG00000022946)
Pomacentridae	ANCESTRAL SPECIES	3	ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b.c	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Bicolor damselfish	MODERN SPECIES	51										VAMP3 (ENSSPAG00000009474)	per3 (ENSSPAG00000009502)	mxra8a (ENSSPAG00000009527)	psma5 (ENSSPAG00000009557)	sort1a (ENSSPAG00000009604)	mdm4 (ENSSPAG00000009628)	myog (ENSSPAG00000009642) ##22	ppfia4 (ENSSPAG00000009652) ##25	tmem183a (ENSSPAG00000009725)
Pomacentridae_A	ANCESTRAL SPECIES	2	ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b.c	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Spiny chromis	MODERN SPECIES	596								CAMK1 (ENSAPOG00000022276)	ccdc3b (ENSAPOG00000022227)	ENSAPOG00000022197	per3 (ENSAPOG00000022163)	mxra8a (ENSAPOG00000022083)	psma5 (ENSAPOG00000022059)	sort1a (ENSAPOG00000022011)	mdm4 (ENSAPOG00000000626)	myog (ENSAPOG00000021964) ##22	ppfia4 (ENSAPOG00000021945) ##25	tmem183a (ENSAPOG00000021785)	tfeb (ENSAPOG00000021734)	MDFI (ENSAPOG00000021684)
Amphiprion	ANCESTRAL SPECIES	11	ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00940000158192	ENSGT00940000160817	ENSGT00390000001509.a	ENSGT00550000074958	ENSGT01030000234563.a.a.c.b.b	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b.c	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Orange clownfish	MODERN SPECIES	20	cpne5b (ENSAPEG00000006049)	ADORA1 (ENSAPEG00000006116)	ENSAPEG00000006135	gnl3 (ENSAPEG00000006146)	glt8d1 (ENSAPEG00000006167)	spcs1 (ENSAPEG00000006221)	nek4 (ENSAPEG00000006227)	CAMK1 (ENSAPEG00000006241)	ccdc3b (ENSAPEG00000006290)	VAMP3 (ENSAPEG00000006319)	per3 (ENSAPEG00000006356)	mxra8a (ENSAPEG00000006423)	psma5 (ENSAPEG00000006452)	sort1a (ENSAPEG00000006490)	mdm4 (ENSAPEG00000006515)	myog (ENSAPEG00000006539) ##22	ppfia4 (ENSAPEG00000006718) ##25	tmem183a (ENSAPEG00000006892)	tfeb (ENSAPEG00000006967)	MDFI (ENSAPEG00000006973)	foxp4 (ENSAPEG00000006985)	zgc:101564 (ENSAPEG00000007054)	srgap2 (ENSAPEG00000007068)	ikbke (ENSAPEG00000007148)	RASSF5 (ENSAPEG00000007173)	dyrk3 (ENSAPEG00000007196)	MAPKAPK2 (ENSAPEG00000007249)	il10 (ENSAPEG00000007315)	il19l (ENSAPEG00000007338)	PRELP (ENSAPEG00000007364)	zgc:113307 (ENSAPEG00000007379)
Clown anemonefish	MODERN SPECIES	3230	ADORA1 (ENSAOCG00000000798)	ENSAOCG00000012825	ENSAOCG00000012834	gnl3 (ENSAOCG00000012879)	glt8d1 (ENSAOCG00000012914)	spcs1 (ENSAOCG00000012925)	nek4 (ENSAOCG00000002639)	CAMK1 (ENSAOCG00000013092)	ccdc3b (ENSAOCG00000013108)	VAMP3 (ENSAOCG00000013133)	per3 (ENSAOCG00000013152)	mxra8a (ENSAOCG00000013171)	psma5 (ENSAOCG00000013219)	sort1a (ENSAOCG00000013279)	mdm4 (ENSAOCG00000013299)	myog (ENSAOCG00000013517) ##22	ppfia4 (ENSAOCG00000013765) ##25	tmem183a (ENSAOCG00000000870)	tfeb (ENSAOCG00000013898)
Atherinomorphae	ANCESTRAL SPECIES	2	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00390000014429.a	ENSGT00940000156378.a.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT01030000234563.a.a.c.b.b	ENSGT00550000074958	ENSGT00390000001509.a	ENSGT00940000160817	ENSGT00940000158192	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Cyprinodontiformes	ANCESTRAL SPECIES	2	ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00390000014429.a	ENSGT00940000156378.a.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT01030000234563.a.a.c.b.b	ENSGT00550000074958	ENSGT00390000001509.a	ENSGT00940000160817	ENSGT00940000158192	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Aplocheiloidei	ANCESTRAL SPECIES	12	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00390000014429.a	ENSGT00940000156378.a.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT01030000234563.a.a.c.b.b	ENSGT00550000074958	ENSGT00390000001509.a	ENSGT00940000160817	ENSGT00940000158370	ENSGT00940000158192	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Mangrove rivulus	MODERN SPECIES	34														VAMP3 (ENSKMAG00000013989)	mdm4 (ENSKMAG00000014006)	myog (ENSKMAG00000014034) ##22	ppfia4 (ENSKMAG00000014141) ##25	tmem183a (ENSKMAG00000014277)	tfeb (ENSKMAG00000014324)	ENSKMAG00000014392	foxp4 (ENSKMAG00000014437)	zgc:101564 (ENSKMAG00000014499)	srgap2 (ENSKMAG00000014552)	ikbke (ENSKMAG00000014649)	RASSF5 (ENSKMAG00000014719)	dyrk3 (ENSKMAG00000014763)	MAPKAPK2 (ENSKMAG00000014799)	il10 (ENSKMAG00000014846)	il19l (ENSKMAG00000014858)	PRELP (ENSKMAG00000014868)	zgc:113307 (ENSKMAG00000014890)
Turquoise killifish	MODERN SPECIES	1619	cpne5b (ENSNFUG00015012859)	ENSNFUG00015013766	ADORA1 (ENSNFUG00015013772)	Nfu_g_1_021434 (ENSNFUG00015013782)	ccdc3b (ENSNFUG00015013787)	CAMK1 (ENSNFUG00015013872)	GNL3 (ENSNFUG00015015382)	GLT8D1 (ENSNFUG00015015396)	SPCS1 (ENSNFUG00015015426)	nek4 (ENSNFUG00015015439)	PSMA5 (ENSNFUG00015015714)	MXRA8A (ENSNFUG00015015730)	PER3 (ENSNFUG00015015748)	ENSNFUG00015015841	MDM4 (ENSNFUG00015015846)	myog (ENSNFUG00015015851) ##22	PPFIA4 (ENSNFUG00015016044) ##25	tmem183a (ENSNFUG00015019908)	tfeb (ENSNFUG00015019917)	ENSNFUG00015020001	foxp4 (ENSNFUG00015020011)	ENSNFUG00015020049	FAM72B (ENSNFUG00015020052)	srgap2 (ENSNFUG00015020072)	IKBKE (ENSNFUG00015020163)	CR848745.1 (ENSNFUG00015020176)	DYRK3 (ENSNFUG00015020182)	MAPKAPK2 (ENSNFUG00015020201)	ENSNFUG00015020261	ENSNFUG00015020263	il10 (ENSNFUG00015020266)
Cyprinodontoidei	ANCESTRAL SPECIES	4	ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00390000014429.a	ENSGT00940000156378.a.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT01030000234563.a.a.c.b.b	ENSGT00550000074958	ENSGT00390000001509.a	ENSGT00940000160817	ENSGT00940000158192	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
NAME_4	ANCESTRAL SPECIES	7	ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00390000014429.a	ENSGT00940000156378.a.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT01030000234563.a.a.c.b.b	ENSGT00550000074958	ENSGT00390000001509.a	ENSGT00940000160817	ENSGT00940000158192	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Sheepshead minnow	MODERN SPECIES	184					DNAJC16 (ENSCVAG00000006371)	cdab (ENSCVAG00000006341)	ENSCVAG00000006309	ENSCVAG00000006301	camk2n1 (ENSCVAG00000006289)	sort1a (ENSCVAG00000006274)	psma5 (ENSCVAG00000005974)	mxra8a (ENSCVAG00000000170)	per3 (ENSCVAG00000005951)	VAMP2 (ENSCVAG00000005728)	mdm4 (ENSCVAG00000005687)	myog (ENSCVAG00000005623) ##22	ppfia4 (ENSCVAG00000005608) ##25	tmem183a (ENSCVAG00000005506)	tfeb (ENSCVAG00000005477)	ENSCVAG00000005446	foxp4 (ENSCVAG00000005430)	zgc:101564 (ENSCVAG00000005329)	srgap2 (ENSCVAG00000005306)	ikbke (ENSCVAG00000005258)	RASSF5 (ENSCVAG00000005083)	dyrk3 (ENSCVAG00000005077)	MAPKAPK2 (ENSCVAG00000005043)	il10 (ENSCVAG00000005005)	il19l (ENSCVAG00000004879)	PRELP (ENSCVAG00000004858)	ENSCVAG00000004847
Mummichog	MODERN SPECIES	2339	ADORA1 (ENSFHEG00000020831)	ENSFHEG00000020844	ENSFHEG00000020854	ccdc3b (ENSFHEG00000020871)	CAMK1 (ENSFHEG00000020888)	gnl3 (ENSFHEG00000020897)	glt8d1 (ENSFHEG00000020930)	spcs1 (ENSFHEG00000020950)	nek4 (ENSFHEG00000020962)	sort1a (ENSFHEG00000020977)	psma5 (ENSFHEG00000021012)	mxra8a (ENSFHEG00000021039)	per3 (ENSFHEG00000021062)	vamp3 (ENSFHEG00000021090)	mdm4 (ENSFHEG00000021096)	myog (ENSFHEG00000021108) ##22	ppfia4 (ENSFHEG00000021180) ##25	tmem183a (ENSFHEG00000021233)	tfeb (ENSFHEG00000021270)	ENSFHEG00000021290	foxp4 (ENSFHEG00000021374)	zgc:101564 (ENSFHEG00000021395)	srgap2 (ENSFHEG00000021464)	ikbke (ENSFHEG00000021483)	ENSFHEG00000021488	RASSF5 (ENSFHEG00000021535)	dyrk3 (ENSFHEG00000021583)	MAPKAPK2 (ENSFHEG00000021600)	il10 (ENSFHEG00000021614)	il19l (ENSFHEG00000021620)	PRELP (ENSFHEG00000021626)
Poeciliinae	ANCESTRAL SPECIES	4	ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00390000014429.a	ENSGT00940000156378.a.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT01030000234563.a.a.c.b.b	ENSGT00550000074958	ENSGT00390000001509.a	ENSGT00940000160817	ENSGT00940000158192	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Poecilia	ANCESTRAL SPECIES	20	ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00390000014429.a	ENSGT00940000156378.a.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT01030000234563.a.a.c.b.b	ENSGT00550000074958	ENSGT00390000001509.a	ENSGT00940000160817	ENSGT00940000158192	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
NAME_6	ANCESTRAL SPECIES	10	ENSGT00940000156194.m.b	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00390000014429.a	ENSGT00940000156378.a.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT01030000234563.a.a.c.b.b	ENSGT00550000074958	ENSGT00390000001509.a	ENSGT00940000160817	ENSGT00940000158192	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Sailfin molly	MODERN SPECIES	376			ENSPLAG00000016931	ccdc3b (ENSPLAG00000016941)	CAMK1 (ENSPLAG00000016964)	gnl3 (ENSPLAG00000016968)	glt8d1 (ENSPLAG00000016982)	spcs1 (ENSPLAG00000017002)	nek4 (ENSPLAG00000000638)	sort1a (ENSPLAG00000017018)	psma5 (ENSPLAG00000017066)	mxra8a (ENSPLAG00000017086)	per3 (ENSPLAG00000017164)	VAMP3 (ENSPLAG00000017179)	mdm4 (ENSPLAG00000017184)	myog (ENSPLAG00000017307) ##22	ppfia4 (ENSPLAG00000017371) ##25	tmem183a (ENSPLAG00000017402)
Amazon molly	MODERN SPECIES	374	ENSPFOG00000017684	ADORA1 (ENSPFOG00000017673)	ENSPFOG00000017668	ccdc3b (ENSPFOG00000017664)	CAMK1 (ENSPFOG00000017643)	gnl3 (ENSPFOG00000017601)	glt8d1 (ENSPFOG00000017573)	spcs1 (ENSPFOG00000017557)	nek4 (ENSPFOG00000017539)	sort1a (ENSPFOG00000017495)	psma5 (ENSPFOG00000017468)	mxra8a (ENSPFOG00000017431)	per3 (ENSPFOG00000017337)	VAMP3 (ENSPFOG00000022583)	mdm4 (ENSPFOG00000017284)	myog (ENSPFOG00000017279) ##22	ENSPFOG00000024758	ppfia4 (ENSPFOG00000017103) ##25	tmem183a (ENSPFOG00000017047)	tfeb (ENSPFOG00000017022)	ENSPFOG00000017016	foxp4 (ENSPFOG00000016922)	zgc:101564 (ENSPFOG00000016903)	srgap2 (ENSPFOG00000016791)	ikbke (ENSPFOG00000016717)	RASSF5 (ENSPFOG00000016686)	dyrk3 (ENSPFOG00000016653)	MAPKAPK2 (ENSPFOG00000016614)	il10 (ENSPFOG00000016593)	il19l (ENSPFOG00000016582)	PRELP (ENSPFOG00000022192)
Guppy	MODERN SPECIES	457	cpne5b (ENSPREG00000002752)	ADORA1 (ENSPREG00000002820)	ENSPREG00000002836	ccdc3b (ENSPREG00000002846)	CAMK1 (ENSPREG00000002868)	gnl3 (ENSPREG00000002909)	glt8d1 (ENSPREG00000002996)	spcs1 (ENSPREG00000003077)	nek4 (ENSPREG00000003144)	sort1a (ENSPREG00000003169)	psma5 (ENSPREG00000003192)	mxra8a (ENSPREG00000003226)	per3 (ENSPREG00000003263)	ENSPREG00000003327	mdm4 (ENSPREG00000003345)	myog (ENSPREG00000003370) ##22	ppfia4 (ENSPREG00000003395) ##25	tmem183a (ENSPREG00000003493)	tfeb (ENSPREG00000003528)	ENSPREG00000003563	ENSPREG00000003572	ENSPREG00000003583	zgc:101564 (ENSPREG00000003590)	srgap2 (ENSPREG00000003630)	ikbke (ENSPREG00000003716)	RASSF5 (ENSPREG00000003780)	dyrk3 (ENSPREG00000003825)	MAPKAPK2 (ENSPREG00000003843)	il10 (ENSPREG00000003878)	il19l (ENSPREG00000003885)	PRELP (ENSPREG00000003895)
Platyfish	MODERN SPECIES	12	cpne5b (ENSXMAG00000004086)	ADORA1 (ENSXMAG00000004078)	ENSXMAG00000027348	ccdc3b (ENSXMAG00000004074)	CAMK1 (ENSXMAG00000004063)	gnl3 (ENSXMAG00000022565)	glt8d1 (ENSXMAG00000004038)	spcs1 (ENSXMAG00000004036)	nek4 (ENSXMAG00000004025)	sort1a (ENSXMAG00000003480)	psma5 (ENSXMAG00000004010)	mxra8a (ENSXMAG00000004007)	per3 (ENSXMAG00000003961)	VAMP3 (ENSXMAG00000003956)	mdm4 (ENSXMAG00000024253)	myog (ENSXMAG00000003931) ##22	ppfia4 (ENSXMAG00000003883) ##25	tmem183a (ENSXMAG00000003874)	tfeb (ENSXMAG00000025996)	ENSXMAG00000022808	ENSXMAG00000003824	ENSXMAG00000027610	ENSXMAG00000028454	zgc:101564 (ENSXMAG00000025979)	srgap2 (ENSXMAG00000003785)	ikbke (ENSXMAG00000003768)	RASSF5 (ENSXMAG00000024018)	dyrk3 (ENSXMAG00000003761)	MAPKAPK2 (ENSXMAG00000027042)	il10 (ENSXMAG00000003745)	il19l (ENSXMAG00000028104)
Oryzias	ANCESTRAL SPECIES	1	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00390000014429.a	ENSGT00940000156378.a.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT01030000234563.a.a.c.b.b	ENSGT00550000074958	ENSGT00390000001509.a	ENSGT00940000160817	ENSGT00940000158192	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Oryzias_b	ANCESTRAL SPECIES	3	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00390000014429.a	ENSGT00940000156378.a.a	ENSGT00940000165627.a.b.c.b.b.b.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT01030000234563.a.a.c.b.b	ENSGT00550000074958	ENSGT00390000001509.a	ENSGT00940000160817	ENSGT00940000158192	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Javanese ricefish	MODERN SPECIES	19	ube2j2 (ENSOJAG00000013879)	ADORA1 (ENSOJAG00000013961)	ENSOJAG00000013968	ccdc3b (ENSOJAG00000013973)	CAMK1 (ENSOJAG00000014013)	ENSOJAG00000014280	spcs1 (ENSOJAG00000014391)	nek4 (ENSOJAG00000014406)	sort1a (ENSOJAG00000014426)	psma5 (ENSOJAG00000014989)	mxra8a (ENSOJAG00000015021)	ENSOJAG00000015037	per3 (ENSOJAG00000015067)	ENSOJAG00000015432	mdm4 (ENSOJAG00000015456)	myog (ENSOJAG00000015485) ##22	ppfia4 (ENSOJAG00000015569) ##25	tmem183a (ENSOJAG00000016687)	ENSOJAG00000016725	tfeb (ENSOJAG00000016745)	ENSOJAG00000016752	foxp4 (ENSOJAG00000016774)	zgc:101564 (ENSOJAG00000017005)	srgap2 (ENSOJAG00000017066)	ENSOJAG00000017758	dyrk3 (ENSOJAG00000017770)	MAPKAPK2 (ENSOJAG00000017822)	il10 (ENSOJAG00000018345)	il19l (ENSOJAG00000018351)	PRELP (ENSOJAG00000018362)	zgc:113307 (ENSOJAG00000018386)
Indian medaka	MODERN SPECIES	8	ube2j2 (ENSOMEG00000018693)	acap3b (ENSOMEG00000018838)	PUSL1 (ENSOMEG00000018897)	ENSOMEG00000018914	ddx19b (ENSOMEG00000018968)	camk2n1 (ENSOMEG00000018989)	ENSOMEG00000018994	ENSOMEG00000019034	cdab (ENSOMEG00000019061)	DNAJC16 (ENSOMEG00000019112)	b3galt6 (ENSOMEG00000019126)	ENSOMEG00000019156	per3 (ENSOMEG00000019234)	ENSOMEG00000019257	mdm4 (ENSOMEG00000019280)	myog (ENSOMEG00000019305) ##22	ppfia4 (ENSOMEG00000019395) ##25	tmem183a (ENSOMEG00000019471)	tfeb (ENSOMEG00000019545)	ENSOMEG00000019583	ENSOMEG00000019643	ENSOMEG00000019661	zgc:101564 (ENSOMEG00000019686)	srgap2 (ENSOMEG00000019817)	ikbke (ENSOMEG00000019940)	RASSF5 (ENSOMEG00000019978)	dyrk3 (ENSOMEG00000020002)	MAPKAPK2 (ENSOMEG00000020044)	il10 (ENSOMEG00000020066)	il19l (ENSOMEG00000020107)	PRELP (ENSOMEG00000020149)
Oryzias_a	ANCESTRAL SPECIES	5	ENSGT00940000176117	ENSGT01030000234555.a.a.b.a.a.a.b	ENSGT01100000263491.a.b.b.c.b	ENSGT00390000014429.a	ENSGT00940000156378.a.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT01030000234563.a.a.c.b.b	ENSGT00550000074958	ENSGT00390000001509.a	ENSGT00940000160817	ENSGT00940000158192	ENSGT00530000063539.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261.k.a	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Chinese medaka	MODERN SPECIES	12	ENSOSIG00000010917	ADORA1 (ENSOSIG00000010916)	ENSOSIG00000010915	ccdc3b (ENSOSIG00000010914)	CAMK1 (ENSOSIG00000007938)	gnl3 (ENSOSIG00000007891)	glt8d1 (ENSOSIG00000007888)	spcs1 (ENSOSIG00000007887)	nek4 (ENSOSIG00000007886)	sort1a (ENSOSIG00000007705)	psma5 (ENSOSIG00000007696)	mxra8a (ENSOSIG00000007694)	per3 (ENSOSIG00000007670)	vamp3 (ENSOSIG00000007659)	mdm4 (ENSOSIG00000007657)	myog (ENSOSIG00000007631) ##22	ppfia4 (ENSOSIG00000000367) ##25	tmem183a (ENSOSIG00000000213)	tfeb (ENSOSIG00000000208)	ENSOSIG00000000202	foxp4 (ENSOSIG00000000113)	zgc:101564 (ENSOSIG00000000025)
Japanese Medaka HdrR	MODERN SPECIES	19	ADORA1 (ENSORLG00000016055)	ENSORLG00000022900	ccdc3b (ENSORLG00000016046)	CAMK1 (ENSORLG00000016042)	gnl3 (ENSORLG00000016030)	glt8d1 (ENSORLG00000016012)	spcs1 (ENSORLG00000015994)	nek4 (ENSORLG00000015988)	ENSORLG00000015979	psma5 (ENSORLG00000015965)	ENSORLG00000015958	per3 (ENSORLG00000015952)	ENSORLG00000026102	vamp3 (ENSORLG00000015925)	mdm4 (ENSORLG00000015916)	myog (ENSORLG00000015906) ##22	ppfia4 (ENSORLG00000015900) ##25	tmem183a (ENSORLG00000015880)	tfeb (ENSORLG00000015866)	ENSORLG00000021932	ENSORLG00000026008	foxp4 (ENSORLG00000015849)	ENSORLG00000026141	zgc:101564 (ENSORLG00000015806)	srgap2 (ENSORLG00000015797)	ikbke (ENSORLG00000015769)	RASSF5 (ENSORLG00000015763)	dyrk3 (ENSORLG00000015754)	MAPKAPK2 (ENSORLG00000015745)	il10 (ENSORLG00000015724)	ENSORLG00000028038
Pinecone sodierfish	MODERN SPECIES	19	ADORA1 (ENSMMDG00005003348)	ENSMMDG00005003342	gnl3 (ENSMMDG00005003334)	glt8d1 (ENSMMDG00005003330)	spcs1 (ENSMMDG00005003328)	nek4 (ENSMMDG00005003324)	ENSMMDG00005003279	CAMK1 (ENSMMDG00005000734)	ccdc3b (ENSMMDG00005000603)	VAMP3 (ENSMMDG00005000599)	per3 (ENSMMDG00005000381)	mxra8a (ENSMMDG00005000267)	psma5 (ENSMMDG00005000246)	sort1a (ENSMMDG00005000210)	mdm4 (ENSMMDG00005000181)	myog (ENSMMDG00005000153) ##22	ENSMMDG00005000131 ##25	ppfia4 (ENSMMDG00005024120) ##25	tmem183a (ENSMMDG00005024117)	tfeb (ENSMMDG00005024115)	MDFI (ENSMMDG00005024113)	foxp4 (ENSMMDG00005024111)	zgc:101564 (ENSMMDG00005024110)	srgap2 (ENSMMDG00005024103)	ikbke (ENSMMDG00005024087)	RASSF5 (ENSMMDG00005024079)	dyrk3 (ENSMMDG00005024075)	MAPKAPK2 (ENSMMDG00005024061)	ENSMMDG00005024047	il19l (ENSMMDG00005024044)	PRELP (ENSMMDG00005024038)
Osteoglossiformes	ANCESTRAL SPECIES	207															ENSGT01100000263491.a.b.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00390000005106	ENSGT00950000182824.a.a.b.b	ENSGT00950000182937.B.a	ENSGT00940000159288	ENSGT00940000159878	ENSGT00940000157261	ENSGT00950000183124.A	ENSGT00950000183124.C	ENSGT00940000160163	ENSGT00940000158177.a
Asian bonytongue	MODERN SPECIES	11	SLC2A13 (ENSSFOG00015015834)	lrrk2 (ENSSFOG00015015869)	ENSSFOG00015015939	ENSSFOG00015028066	inavab (ENSSFOG00015023494)	GPR25 (ENSSFOG00015023506)	tmem167b (ENSSFOG00015028856)	MAPK14 (ENSSFOG00015023518)	srpk1b (ENSSFOG00015023536)	LHFPL5 (ENSSFOG00015023552)	KIF21B (ENSSFOG00015023566)	cpne5b (ENSSFOG00015023601)	ADORA1 (ENSSFOG00015023604)	ENSSFOG00015027013	ENSSFOG00015023606	myog (ENSSFOG00015023608) ##22	ppfia4 (ENSSFOG00015023639) ##25	tmem183a (ENSSFOG00015023690)	tfeb (ENSSFOG00015023709)	ENSSFOG00015000092	foxp4 (ENSSFOG00015000101)	zgc:101564 (ENSSFOG00015033196)	srgap2 (ENSSFOG00015000246)	ikbke (ENSSFOG00015000369)	RASSF5 (ENSSFOG00015000377)	dyrk3 (ENSSFOG00015032657)	mapkapk2a (ENSSFOG00015000408)	il10 (ENSSFOG00015000464)	il19l (ENSSFOG00015000472)	PRELP (ENSSFOG00015000521)	ENSSFOG00015000527
P. kingsleyae	MODERN SPECIES	274															ENSPKIG00000005164	myog (ENSPKIG00000005145) ##22	ppfia4 (ENSPKIG00000005107) ##25	tmem183a (ENSPKIG00000005053)	tfeb (ENSPKIG00000005002)	MDFI (ENSPKIG00000004974)	foxp4 (ENSPKIG00000004917)	ENSPKIG00000004875	zgc:101564 (ENSPKIG00000004851)	srgap2 (ENSPKIG00000004776)	ikbke (ENSPKIG00000004674)	RASSF5 (ENSPKIG00000004634)	dyrk3 (ENSPKIG00000004611)	mapkapk2a (ENSPKIG00000004557)	il10 (ENSPKIG00000004527)	il19l (ENSPKIG00000004512)	PRELP (ENSPKIG00000004496)
Spotted gar	DUPLICATION
Spotted gar	MODERN SPECIES	666	ENSLOCG00000001786	igf2b (ENSLOCG00000001806)	mrpl23 (ENSLOCG00000001825)	th (ENSLOCG00000001834)	ENSLOCG00000001862	uevld (ENSLOCG00000001881)	spty2d1 (ENSLOCG00000001901)	tmem86a (ENSLOCG00000001930)	IGSF22 (ENSLOCG00000001945)	B4GALNT4 (ENSLOCG00000001959)	ABTB2 (ENSLOCG00000001988)	kcnj11 (ENSLOCG00000002016)	abcc8 (ENSLOCG00000002032)	ush1c (ENSLOCG00000002073)	OTOG (ENSLOCG00000002110)	ENSLOCG00000002142 ##22	zgc:172145 (ENSLOCG00000002153)	MYOD1 (ENSLOCG00000002164) ##22	tnnt3a (ENSLOCG00000002181)	ENSLOCG00000002207	ENSLOCG00000017320	tnni2a.4 (ENSLOCG00000002237)	SYT8 (ENSLOCG00000002263)	ENSLOCG00000002283	ctsd (ENSLOCG00000002297)	ENSLOCG00000002337	drd4a (ENSLOCG00000002345)	deaf1 (ENSLOCG00000002360)	BET1L (ENSLOCG00000002376)	ric8a (ENSLOCG00000002406)	sirt3 (ENSLOCG00000002426)
Spotted gar	MODERN SPECIES	669	ENSLOCG00000017929	slco2b1 (ENSLOCG00000010831)	ENSLOCG00000017927	ora1 (ENSLOCG00000017925)	ENSLOCG00000010826	SLC26A9 (ENSLOCG00000010814)	phtf1 (ENSLOCG00000010802)	ENSLOCG00000010796	ENSLOCG00000010788	pfkfb2a (ENSLOCG00000010773)	yod1 (ENSLOCG00000010760)	ENSLOCG00000010752	dclre1b (ENSLOCG00000010747)	ENSLOCG00000010741	adora1b (ENSLOCG00000010733)	myog (ENSLOCG00000010722) ##22	ppfia4 (ENSLOCG00000010689) ##25	tmem183a (ENSLOCG00000010682)	ENSLOCG00000010674	ENSLOCG00000010670 #35	ENSLOCG00000010662	slc5a8l (ENSLOCG00000010641)	tshba (ENSLOCG00000010628)	slc25a55b (ENSLOCG00000010612)	tspan2a (ENSLOCG00000010592)	ngfb (ENSLOCG00000017923)	KCNA3 (ENSLOCG00000017921)	kcna2b (ENSLOCG00000018069)	KCNA10 (ENSLOCG00000018067)	ENSLOCG00000018065	ENSLOCG00000010576
Sarcopterygii	ANCESTRAL SPECIES	577															ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000170563
Tetrapoda	ANCESTRAL SPECIES	283															ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000170563
Amniota	ANCESTRAL SPECIES	101														ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000170563	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224	ENSGT00730000111186	ENSGT00940000159825	ENSGT00390000017780.f
Sauria	ANCESTRAL SPECIES	47	ENSGT00940000160431	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT00940000159939	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000154563	ENSGT00390000017780.f	ENSGT00940000159825	ENSGT00730000111186	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224	ENSGT00940000158190
Archelosauria	ANCESTRAL SPECIES	22	ENSGT00940000160431	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT00940000159939	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000170563	ENSGT00940000163962	ENSGT00940000158289.b	ENSGT00940000159650	ENSGT00940000154102.a	ENSGT01050000244888.a.b	ENSGT00390000011228.a	ENSGT00940000162196	ENSGT01030000234625.A	ENSGT00940000156861	ENSGT00940000153792.B	ENSGT00940000157493	ENSGT00940000154189.A
Archosauria	ANCESTRAL SPECIES	50	ENSGT00940000160431	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT00940000159939	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000170563	ENSGT00940000163962	ENSGT00940000158289.b	ENSGT00940000159650
Aves	ANCESTRAL SPECIES	25	ENSGT01050000244888.a.b	ENSGT00940000154102.a	ENSGT00730000111186	ENSGT00940000159825	ENSGT00390000017780.f	ENSGT00940000154563	ENSGT00940000167691	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000000819.b	ENSGT00940000162073	ENSGT00940000156735	ENSGT00940000154709.a.a	ENSGT00390000005256	ENSGT01030000234588.b.a	ENSGT00440000039564.a.a	ENSGT00940000156777	ENSGT00940000157067	ENSGT00940000166065	ENSGT00940000157586	ENSGT00940000156637
Neognathae	ANCESTRAL SPECIES	24	ENSGT01050000244888.a.b	ENSGT00940000154102.a	ENSGT00730000111186	ENSGT00940000159825	ENSGT00390000017780.f	ENSGT00940000154563	ENSGT00940000167691	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000000819.b	ENSGT00940000162073	ENSGT00940000156735	ENSGT00940000154709.a.a	ENSGT00390000005256	ENSGT01030000234588.b.a	ENSGT00440000039564.a.a	ENSGT00940000156777	ENSGT00940000157067	ENSGT00940000166065	ENSGT00940000157586	ENSGT00940000156637
Galloanserae	ANCESTRAL SPECIES	28	ENSGT01050000244888.a.b	ENSGT00940000154102.a	ENSGT00730000111186	ENSGT00940000159825	ENSGT00390000017780.f	ENSGT00940000154563	ENSGT00940000167691	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000000819.b	ENSGT00940000162073	ENSGT00940000156735	ENSGT00940000154709.a.a	ENSGT00390000005256	ENSGT01030000234588.b.a	ENSGT00440000039564.a.a	ENSGT00940000156777	ENSGT00940000157067	ENSGT00940000157586	ENSGT00940000156637	ENSGT00940000160431
Phasianidae	ANCESTRAL SPECIES	22	ENSGT00940000154102.a	ENSGT00730000111186	ENSGT00960000187715.b	ENSGT00940000159825	ENSGT00390000017780.f	ENSGT00940000154563	ENSGT00940000167691	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000000819.b	ENSGT00940000162073	ENSGT00940000156735	ENSGT00940000154709.a.a	ENSGT00390000005256	ENSGT01030000234588.b.a	ENSGT00440000039564.a.a	ENSGT00940000156777	ENSGT00940000157067	ENSGT00940000157586	ENSGT00940000156637	ENSGT00940000160431
Japanese quail	MODERN SPECIES	18	INAVA (ENSCJPG00005009068)	SHISA4 (ENSCJPG00005009067)	ENSCJPG00005009066	LMOD1 (ENSCJPG00005009065)	TIMM17A (ENSCJPG00005009064)	ADIPOR1 (ENSCJPG00005009063)	ENSCJPG00005009062	UBE2T (ENSCJPG00005009061)	ENSCJPG00005009060	LRIF1 (ENSCJPG00005009059)	DRAM2 (ENSCJPG00005009058)	CEPT1 (ENSCJPG00005009057)	DENND2D (ENSCJPG00005009056)	MYBPH (ENSCJPG00005009055)	ADORA1 (ENSCJPG00005009054)	MYOG (ENSCJPG00005009052) ##22	PPFIA4 (ENSCJPG00005008004) ##25	TMEM183A (ENSCJPG00005007997)	ENSCJPG00005007996	TMEM9 (ENSCJPG00005007995)	ENSCJPG00005007994	PKP1 (ENSCJPG00005007911)	TNNT2 (ENSCJPG00005007908)	TNNI1 (ENSCJPG00005007907)	PHLDA3 (ENSCJPG00005007906)	CSRP1 (ENSCJPG00005007905)	PPP1R12B (ENSCJPG00005007786)	SYT2 (ENSCJPG00005007448)	NAV1 (ENSCJPG00005007385)	RNPEP (ENSCJPG00005007249)	LZTR1 (ENSCJPG00005007247)
Phasianidae_b	ANCESTRAL SPECIES	22	ENSGT00940000156861	ENSGT00940000154102.a	ENSGT00730000111186	ENSGT00940000159825	ENSGT00390000017780.f	ENSGT00940000154563	ENSGT00940000167691	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000000819.b	ENSGT00940000162073	ENSGT00940000156735	ENSGT00940000154709.a.a	ENSGT00390000005256	ENSGT01030000234588.b.a	ENSGT00440000039564.a.a	ENSGT00940000156777	ENSGT00940000157067	ENSGT00940000157586	ENSGT00940000156637	ENSGT00940000160431
Chicken	MODERN SPECIES	18	ENSGALG00010024718	C26H1orf106 (ENSGALG00010024702)	SHISA4 (ENSGALG00010024683)	LMOD1 (ENSGALG00010024863)	TIMM17B (ENSGALG00010024828)	ADIPOR1 (ENSGALG00010024810)	ENSGALG00010024805	UBE2T (ENSGALG00010024783)	ENSGALG00010024760	LRIF1 (ENSGALG00010024712)	DRAM2 (ENSGALG00010024692)	CEPT1 (ENSGALG00010024627)	DENND2D (ENSGALG00010024608)	MYBPHL (ENSGALG00010024595)	ADORA1 (ENSGALG00010024589)	MYOG (ENSGALG00010025215) ##22	PPFIA4 (ENSGALG00010025188) ##25	TMEM183A (ENSGALG00010025154)	MGAT4C (ENSGALG00010025115)	TMEM9 (ENSGALG00010025044)	ENSGALG00010025003	PKP1 (ENSGALG00010024891)	TNNT2 (ENSGALG00010026743)	LAD1 (ENSGALG00010026638)	TNNI1 (ENSGALG00010026560)	CSRP1 (ENSGALG00010026508)	PPP1R12B (ENSGALG00010026355)	SYT2 (ENSGALG00010026315)	NAV1 (ENSGALG00010026262)	RNPEP (ENSGALG00010026143)	LZTR1 (ENSGALG00010026117)
Turkey	MODERN SPECIES	20	ENSMGAG00000001543	ENSMGAG00000001598	ENSMGAG00000018354	ENSMGAG00000001642	ENSMGAG00000002044	PKP1 (ENSMGAG00000002027)	TNNT2 (ENSMGAG00000001868)	LAD1 (ENSMGAG00000001842)	TNNI1 (ENSMGAG00000001811)	PHLDA3 (ENSMGAG00000021472)	CSRP1 (ENSMGAG00000002016)	ENSMGAG00000002067	ENSMGAG00000002066	ENSMGAG00000002056	ENSMGAG00000002090 ##25	MYOG (ENSMGAG00000002212) ##22	ENSMGAG00000005150	ENSMGAG00000005149	ENSMGAG00000005215	ENSMGAG00000005236	ENSMGAG00000005274	ENSMGAG00000005257	ENSMGAG00000005281	ENSMGAG00000005354	ENSMGAG00000005332	ENSMGAG00000005393	ENSMGAG00000005370	ENSMGAG00000019299	ENSMGAG00000018933
Anatidae	ANCESTRAL SPECIES	38	ENSGT00390000002060	ENSGT00940000157997	ENSGT00390000002376	ENSGT00940000159495	ENSGT00940000164965	ENSGT00940000163644.c	ENSGT00940000159691	ENSGT00940000160187	ENSGT00940000158700	ENSGT00940000153835.a.a	ENSGT00470000042297	ENSGT00940000153835.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000000819.b	ENSGT00940000162073	ENSGT00940000156735	ENSGT00940000154709.a.a	ENSGT00390000005256	ENSGT01030000234588.b.a	ENSGT00440000039564.a.a	ENSGT00940000156777	ENSGT00940000157067	ENSGT00940000157586	ENSGT00940000156637	ENSGT00940000160431
Pink-footed goose	MODERN SPECIES	153	MED20 (ENSABRG00000000604)	USP49 (ENSABRG00000000578)	ENSABRG00000000548	FRS3 (ENSABRG00000000531)	ENSABRG00000000514	ENSABRG00000000449	TFEB (ENSABRG00000000425)	MDFI (ENSABRG00000000404)	FOXP4 (ENSABRG00000000369)	ENSABRG00000000347	TREM2 (ENSABRG00000000340)	ENSABRG00000000303	DENND2D (ENSABRG00000000230)	MYBPH (ENSABRG00000000188)	ADORA1 (ENSABRG00000000178)	MYOG (ENSABRG00000000170) ##22	ENSABRG00000000164	PPFIA4 (ENSABRG00000000109) ##25	TMEM183A (ENSABRG00000000101)	ENSABRG00000000098	TMEM9 (ENSABRG00000000096)	ENSABRG00000000085	PKP1 (ENSABRG00000017968)	TNNT2 (ENSABRG00000017950)	LAD1 (ENSABRG00000017940)	TNNI1 (ENSABRG00000017918)	PHLDA3 (ENSABRG00000017905)	CSRP1 (ENSABRG00000017898)	PPP1R12B (ENSABRG00000017893)	SYT2 (ENSABRG00000017886)	NAV1 (ENSABRG00000017875)
Neognathae_b	ANCESTRAL SPECIES	24	ENSGT01050000244888.a.b	ENSGT00940000154102.a	ENSGT00730000111186	ENSGT00940000159825	ENSGT00390000017780.f	ENSGT00940000154563	ENSGT00940000167691	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000000819.b	ENSGT00940000162073	ENSGT00940000156735	ENSGT00940000154709.a.a	ENSGT00390000005256	ENSGT01030000234588.b.a	ENSGT00440000039564.a.a	ENSGT00940000156777	ENSGT00940000157067	ENSGT00940000166065	ENSGT00940000157586	ENSGT00940000156637
Passeriformes	ANCESTRAL SPECIES	21	ENSGT00940000154102.a	ENSGT00730000111186	ENSGT00960000187715	ENSGT00940000159825	ENSGT00390000017780.f	ENSGT00940000154563	ENSGT00940000167691	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000000819.b	ENSGT00940000162073	ENSGT00940000156735	ENSGT00940000154709.a.a	ENSGT00390000005256	ENSGT01030000234588.b.a	ENSGT00440000039564.a.a	ENSGT00940000156777	ENSGT00940000157067	ENSGT00940000166065	ENSGT00940000157586	ENSGT00940000156637
Passeriformes_d	ANCESTRAL SPECIES	21	ENSGT00940000154102.a	ENSGT00730000111186	ENSGT00960000187715	ENSGT00940000159825	ENSGT00390000017780.f	ENSGT00940000154563	ENSGT00940000167691	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000000819.b	ENSGT00940000162073	ENSGT00940000156735	ENSGT00940000154709.a.a	ENSGT00390000005256	ENSGT01030000234588.b.a	ENSGT00440000039564.a.a	ENSGT00940000156777	ENSGT00940000157067	ENSGT00940000166065	ENSGT00940000157586	ENSGT00940000156637
Passeriformes_g	ANCESTRAL SPECIES	24	ENSGT00940000154102.a	ENSGT00730000111186	ENSGT00960000187715	ENSGT00940000159825	ENSGT00390000017780.f	ENSGT00940000154563	ENSGT00940000167691	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000000819.b	ENSGT00940000169516	ENSGT00940000156735	ENSGT00940000154709.a.a	ENSGT00390000005256	ENSGT01030000234588.b.a	ENSGT00440000039564.a.a	ENSGT00940000156777	ENSGT00940000157067	ENSGT00940000166065	ENSGT00940000157586	ENSGT00940000156637
Medium ground finch	MODERN SPECIES	128	INAVA (ENSGFOG00000013016)	ENSGFOG00000013023	SHISA4 (ENSGFOG00000013030)	LMOD1 (ENSGFOG00000013038)	TIMM17A (ENSGFOG00000013041)	ADIPOR1 (ENSGFOG00000013047)	ENSGFOG00000013065	UBE2T (ENSGFOG00000013070)	ENSGFOG00000013076	LRIF1 (ENSGFOG00000013086)	DRAM2 (ENSGFOG00000013088)	CEPT1 (ENSGFOG00000001999)	DENND2D (ENSGFOG00000002007)	MYBPH (ENSGFOG00000002017)	ADORA1 (ENSGFOG00000002030)	MYOG (ENSGFOG00000002039) ##22	PPFIA4 (ENSGFOG00000002061) ##25	ENSGFOG00000002124 #25	TMEM183A (ENSGFOG00000002132)	ENSGFOG00000002149	TMEM9 (ENSGFOG00000002156)	ENSGFOG00000002170	PKP1 (ENSGFOG00000002225)	TNNT2 (ENSGFOG00000003306)	TNNI1 (ENSGFOG00000003337)	PHLDA3 (ENSGFOG00000003358)	CSRP1 (ENSGFOG00000003369)	ENSGFOG00000003382	ENSGFOG00000003446	SYT2 (ENSGFOG00000003458)	NAV1 (ENSGFOG00000003479)
Passeroidea	ANCESTRAL SPECIES	24	ENSGT00940000154102.a	ENSGT00730000111186	ENSGT00960000187715	ENSGT00940000159825	ENSGT00390000017780.f	ENSGT00940000154563	ENSGT00940000167691	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000000819.b	ENSGT00940000169516	ENSGT00940000156735	ENSGT00940000154709.a.a	ENSGT00390000005256	ENSGT01030000234588.b.a	ENSGT00440000039564.a.a	ENSGT00940000156777	ENSGT00940000157067	ENSGT00940000166065	ENSGT00940000157586	ENSGT00940000156637
Zebra finch	MODERN SPECIES	19	SARS1 (ENSTGUG00000001437)	TMEM167B (ENSTGUG00000021926)	INAVA (ENSTGUG00000026592)	SHISA4 (ENSTGUG00000027200)	LMOD1 (ENSTGUG00000025900)	TIMM17A (ENSTGUG00000001422)	ADIPOR1 (ENSTGUG00000001415)	ENSTGUG00000001414	UBE2T (ENSTGUG00000001411)	ENSTGUG00000001403	LRIF1 (ENSTGUG00000001402)	DRAM2 (ENSTGUG00000001400)	DENND2D (ENSTGUG00000001388)	MYBPH (ENSTGUG00000001383)	ADORA1 (ENSTGUG00000001381)	MYOG (ENSTGUG00000001380) ##22	PPFIA4 (ENSTGUG00000001363) ##25	TMEM183A (ENSTGUG00000001354)	ENSTGUG00000001350	ENSTGUG00000023392	TMEM9 (ENSTGUG00000024782)	ENSTGUG00000001343	PKP1 (ENSTGUG00000001339)	TNNT2 (ENSTGUG00000001330)	ENSTGUG00000001329	TNNI1 (ENSTGUG00000001319)	PHLDA3 (ENSTGUG00000001317)	CSRP1 (ENSTGUG00000024671)	PPP1R12B (ENSTGUG00000001309)	ENSTGUG00000028728	SYT2 (ENSTGUG00000001304)
Common canary	MODERN SPECIES	46	ENSSCAG00000007172	SHISA4 (ENSSCAG00000007168)	ENSSCAG00000007164	LMOD1 (ENSSCAG00000007161)	TIMM17A (ENSSCAG00000007158)	ENSSCAG00000007154	ENSSCAG00000007119	UBE2T (ENSSCAG00000007108)	ENSSCAG00000007102	LRIF1 (ENSSCAG00000007100)	DRAM2 (ENSSCAG00000007097)	CEPT1 (ENSSCAG00000007093)	DENND2D (ENSSCAG00000007088)	MYBPH (ENSSCAG00000007084)	ADORA1 (ENSSCAG00000007082)	MYOG (ENSSCAG00000007079) ##22	PPFIA4 (ENSSCAG00000007064) ##25	TMEM183A (ENSSCAG00000007059)	ENSSCAG00000007055	TMEM9 (ENSSCAG00000007050)	ENSSCAG00000007046	ENSSCAG00000007038	PKP1 (ENSSCAG00000007030)	TNNT2 (ENSSCAG00000007026)	ENSSCAG00000007018	ENSSCAG00000007013	TNNI1 (ENSSCAG00000007010)	PHLDA3 (ENSSCAG00000007008)	CSRP1 (ENSSCAG00000007004)	ENSSCAG00000006997	ENSSCAG00000006994
Flycatcher	MODERN SPECIES	18	ENSFALG00000002386	ENSFALG00000024916	SHISA4 (ENSFALG00000028427)	ENSFALG00000002397	TIMM17A (ENSFALG00000002401)	ENSFALG00000027373	ENSFALG00000002416	ENSFALG00000002420	ENSFALG00000002425	ENSFALG00000002434	DRAM2 (ENSFALG00000025847)	ENSFALG00000002448	DENND2D (ENSFALG00000002460)	MYBPH (ENSFALG00000002464)	ADORA1 (ENSFALG00000002469)	MYOG (ENSFALG00000024244) ##22	ENSFALG00000024956	PPFIA4 (ENSFALG00000002474) ##25	ENSFALG00000002482	ENSFALG00000002489	TMEM9 (ENSFALG00000025068)	ENSFALG00000027556	ENSFALG00000002495	PKP1 (ENSFALG00000002501)	TNNT2 (ENSFALG00000002514)	LAD1 (ENSFALG00000002526)	ENSFALG00000025141	TNNI1 (ENSFALG00000002528)	PHLDA3 (ENSFALG00000014611)	CSRP1 (ENSFALG00000002542)	ENSFALG00000028866
Great tit	MODERN SPECIES	19	TMEM167B (ENSPMJG00000004559)	INAVA (ENSPMJG00000004564)	ENSPMJG00000004574	LMOD1 (ENSPMJG00000004582)	TIMM17A (ENSPMJG00000004588)	ADIPOR1 (ENSPMJG00000004594)	ENSPMJG00000004610	UBE2T (ENSPMJG00000004613)	ENSPMJG00000004623	LRIF1 (ENSPMJG00000004634)	DRAM2 (ENSPMJG00000004636)	CEPT1 (ENSPMJG00000004653)	DENND2D (ENSPMJG00000004659)	MYBPH (ENSPMJG00000004664)	ADORA1 (ENSPMJG00000004672)	MYOG (ENSPMJG00000004674) ##22	PPFIA4 (ENSPMJG00000004678) ##25	TMEM183A (ENSPMJG00000004698)	ENSPMJG00000004699	TMEM9 (ENSPMJG00000004702)	ENSPMJG00000004704	PKP1 (ENSPMJG00000004713)	TNNT2 (ENSPMJG00000004718)	ENSPMJG00000004724	TNNI1 (ENSPMJG00000004728)	PHLDA3 (ENSPMJG00000004739)	CSRP1 (ENSPMJG00000004741)	ENSPMJG00000004750	ENSPMJG00000004784	SYT2 (ENSPMJG00000004789)	NAV1 (ENSPMJG00000004802)
Neognathae_c	ANCESTRAL SPECIES	27	ENSGT01050000244888.a.b	ENSGT00940000154102.a	ENSGT00730000111186	ENSGT00940000159825	ENSGT00390000017780.f	ENSGT00940000154563	ENSGT00940000167691	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000000819.b	ENSGT00940000169516	ENSGT00940000162073	ENSGT00940000156735	ENSGT00940000154709.a.a	ENSGT00390000005256	ENSGT01030000234588.b.a	ENSGT00440000039564.a.a	ENSGT00940000156777	ENSGT00940000157067	ENSGT00940000157586	ENSGT00940000156637
Kakapo	MODERN SPECIES	30	ELAPOR1 (ENSSHBG00005006308)	INAVA (ENSSHBG00005006234)	ENSSHBG00005006205	ENSSHBG00005006181	TIMM17A (ENSSHBG00005006162)	ADIPOR1 (ENSSHBG00005006142)	ENSSHBG00005006117	UBE2T (ENSSHBG00005006103)	ENSSHBG00005006065	LRIF1 (ENSSHBG00005006034)	DRAM2 (ENSSHBG00005006023)	CEPT1 (ENSSHBG00005005944)	DENND2D (ENSSHBG00005005926)	MYBPH (ENSSHBG00005005881)	ADORA1 (ENSSHBG00005005858)	MYOG (ENSSHBG00005005843) ##22	PPFIA4 (ENSSHBG00005005805) ##25	TMEM183A (ENSSHBG00005005752)	ENSSHBG00005005726	TMEM9 (ENSSHBG00005000793)	ENSSHBG00005000789	PKP1 (ENSSHBG00005017238)	TNNT2 (ENSSHBG00005017231)	LAD1 (ENSSHBG00005017228)	TNNI1 (ENSSHBG00005017219)	PHLDA3 (ENSSHBG00005017215)	CSRP1 (ENSSHBG00005017211)	ENSSHBG00005017207	SYT2 (ENSSHBG00005017201)	NAV1 (ENSSHBG00005017194)	RNPEP (ENSSHBG00005017185)
Golden eagle	MODERN SPECIES	16	INAVA (ENSACCG00020009128)	SHISA4 (ENSACCG00020009162)	LMOD1 (ENSACCG00020009182)	ENSACCG00020009189	TIMM17A (ENSACCG00020009210)	ADIPOR1 (ENSACCG00020009224)	ENSACCG00020009239	UBE2T (ENSACCG00020009244)	ENSACCG00020009265	LRIF1 (ENSACCG00020009289)	DRAM2 (ENSACCG00020009306)	CEPT1 (ENSACCG00020009330)	DENND2D (ENSACCG00020009339)	MYBPH (ENSACCG00020009357)	ADORA1 (ENSACCG00020009375)	MYOG (ENSACCG00020009387) ##22	PPFIA4 (ENSACCG00020009414) ##25	TMEM183A (ENSACCG00020009442)	TMEM9 (ENSACCG00020009454)	ENSACCG00020009467	ENSACCG00020009492	PKP1 (ENSACCG00020009533)	TNNT2 (ENSACCG00020009571)	LAD1 (ENSACCG00020009588)	TNNI1 (ENSACCG00020009637)	PHLDA3 (ENSACCG00020009657)	CSRP1 (ENSACCG00020009670)	PPP1R12B (ENSACCG00020009734)	SYT2 (ENSACCG00020009791)	NAV1 (ENSACCG00020010203)	RNPEP (ENSACCG00020010556)
African ostrich	MODERN SPECIES	337			ENSSCUG00000002982	TIMM17A (ENSSCUG00000002984)	ADIPOR1 (ENSSCUG00000002989)	ENSSCUG00000002991	UBE2T (ENSSCUG00000002992)	ENSSCUG00000002993	LRIF1 (ENSSCUG00000002995)	DRAM2 (ENSSCUG00000002996)	CEPT1 (ENSSCUG00000003000)	DENND2D (ENSSCUG00000003002)	ENSSCUG00000003004	MYBPH (ENSSCUG00000003007)	ADORA1 (ENSSCUG00000003010)	MYOG (ENSSCUG00000003012) ##22	PPFIA4 (ENSSCUG00000003020) ##25	TMEM183A (ENSSCUG00000003024)	ENSSCUG00000003025	TMEM9 (ENSSCUG00000003027)	ENSSCUG00000003028	ENSSCUG00000003029	PKP1 (ENSSCUG00000003030)	TNNT2 (ENSSCUG00000003033)	LAD1 (ENSSCUG00000003039)	TNNI1 (ENSSCUG00000003046)	PHLDA3 (ENSSCUG00000003049)	CSRP1 (ENSSCUG00000003050)	ENSSCUG00000003051	ENSSCUG00000003053	SYT2 (ENSSCUG00000003054)
Australian saltwater crocodile	MODERN SPECIES	52	ELF3 (ENSCPRG00005006245)	GPR37L1 (ENSCPRG00005006237)	ARL8A (ENSCPRG00005006232)	PTPN7 (ENSCPRG00005006227)	ENSCPRG00005006223	ENSCPRG00005006219	ENSCPRG00005006184	LGR6 (ENSCPRG00005006142)	UBE2T (ENSCPRG00005006126)	LRIF1 (ENSCPRG00005006124)	DRAM2 (ENSCPRG00005006120)	CEPT1 (ENSCPRG00005006113)	DENND2D (ENSCPRG00005006083)	MYBPH (ENSCPRG00005006074)	ADORA1 (ENSCPRG00005006061)	MYOG (ENSCPRG00005006056) ##22	PPFIA4 (ENSCPRG00005006022) ##25	TMEM183A (ENSCPRG00005006010)	ENSCPRG00005006006	ENSCPRG00005006004	CACNA1S (ENSCPRG00005004909)	KIF21B (ENSCPRG00005004750)	CSRP1 (ENSCPRG00005004741)	PHLDA3 (ENSCPRG00005004738)	TNNI1 (ENSCPRG00005004735)	TNNT2 (ENSCPRG00005004703)	PKP1 (ENSCPRG00005004682)	ENSCPRG00005004667	TMEM9 (ENSCPRG00005004662)	ASCL5 (ENSCPRG00005004650)	ENSCPRG00005004572
Cryptodira	ANCESTRAL SPECIES	52	ENSGT00940000160431	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT00940000159939	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000170563	ENSGT00940000163962	ENSGT00940000158289.b	ENSGT00940000159650	ENSGT00940000154102.a	ENSGT01050000244888.a.b	ENSGT00390000011228.a	ENSGT00940000162196	ENSGT01030000234625.A	ENSGT00940000156861	ENSGT00940000153792.B	ENSGT00940000157493	ENSGT00940000154189.A
Testudinoidea	ANCESTRAL SPECIES	22	ENSGT00940000160431	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT00940000159939	ENSGT00940000157365.j	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000170563	ENSGT00940000163962	ENSGT00940000158289.b	ENSGT00940000159650.q	ENSGT00940000154102.a	ENSGT01050000244888.a.b	ENSGT00390000011228.a	ENSGT00940000162196	ENSGT01030000234625.A	ENSGT00940000156861	ENSGT00940000153792.B	ENSGT00940000157493	ENSGT00940000154189.A
Testudinidae	ANCESTRAL SPECIES	26	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT00940000159939	ENSGT00940000157365.j	ENSGT00940000157365.i	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000170563	ENSGT00940000163962	ENSGT00940000158289.b	ENSGT00940000159650.q	ENSGT00940000154102.a	ENSGT01050000244888.a.b	ENSGT00390000011228.a	ENSGT00940000162196	ENSGT01030000234625.A	ENSGT00940000156861	ENSGT00940000153792.B	ENSGT00940000157493	ENSGT00940000154189.A
Goode s thornscrub tortoise	MODERN SPECIES	18	RNPEP (ENSGEVG00005017826)	ELF3 (ENSGEVG00005017757)	GPR37L1 (ENSGEVG00005017731)	ARL8A (ENSGEVG00005017714)	PTPN7 (ENSGEVG00005017694)	ENSGEVG00005017566	LGR6 (ENSGEVG00005017430)	UBE2T (ENSGEVG00005017349)	ENSGEVG00005017332	LRIF1 (ENSGEVG00005017261)	DRAM2 (ENSGEVG00005017246)	CEPT1 (ENSGEVG00005017221)	DENND2D (ENSGEVG00005017176)	MYBPH (ENSGEVG00005017043)	ADORA1 (ENSGEVG00005017006)	MYOG (ENSGEVG00005016982) ##22	ENSGEVG00005016960	PPFIA4 (ENSGEVG00005016938) ##25	TMEM183A (ENSGEVG00005016895)	ENSGEVG00005016850	ENSGEVG00005016823	CACNA1S (ENSGEVG00005015619)	KIF21B (ENSGEVG00005011008)	INAVA (ENSGEVG00005010232)	GPR25 (ENSGEVG00005010211)	ENSGEVG00005010087	TMEM167B (ENSGEVG00005010040)	CFAP276 (ENSGEVG00005009981)	ELAPOR1 (ENSGEVG00005009795)	SARS1 (ENSGEVG00005009757)	CELSR2 (ENSGEVG00005009183)
Abingdon island giant tortoise	MODERN SPECIES	2190										LRIF1 (ENSCABG00000016645)	DRAM2 (ENSCABG00000016647)	CEPT1 (ENSCABG00000016658)	DENND2D (ENSCABG00000016661)	MYBPH (ENSCABG00000016668)	ADORA1 (ENSCABG00000016674)	MYOG (ENSCABG00000016675) ##22	PPFIA4 (ENSCABG00000016678) ##25	TMEM183A (ENSCABG00000016680)	ENSCABG00000016681	ENSCABG00000016682	CACNA1S (ENSCABG00000016707)	KIF21B (ENSCABG00000017476)	ENSCABG00000017486
Emydidae	ANCESTRAL SPECIES	73	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT01030000237114	ENSGT00940000159939	ENSGT00940000157365.j	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310
Three-toed box turtle	MODERN SPECIES	89	SYT2 (ENSTMTG00000012634)	NAV1 (ENSTMTG00000012573)	RNPEP (ENSTMTG00000012090)	ELF3 (ENSTMTG00000012047)	GPR37L1 (ENSTMTG00000012023)	ARL8A (ENSTMTG00000012007)	PTPN7 (ENSTMTG00000011982)	ENSTMTG00000011908	ENSTMTG00000011779	LRIF1 (ENSTMTG00000011753)	DRAM2 (ENSTMTG00000011739)	CEPT1 (ENSTMTG00000011693)	DENND2D (ENSTMTG00000011669)	MYBPH (ENSTMTG00000011565)	ADORA1 (ENSTMTG00000011551)	MYOG (ENSTMTG00000011545) ##22	PPFIA4 (ENSTMTG00000011478) ##25	ENSTMTG00000011452
painted turtle	MODERN SPECIES	928	RNPEP (ENSCPBG00000010163)	ELF3 (ENSCPBG00000010162)	GPR37L1 (ENSCPBG00000010157)	ARL8A (ENSCPBG00000010155)	PTPN7 (ENSCPBG00000010153)	ENSCPBG00000010130	ENSCPBG00000010129	LGR6 (ENSCPBG00000010122)	UBE2T (ENSCPBG00000010114)	LRIF1 (ENSCPBG00000010109)	DRAM2 (ENSCPBG00000010103)	CEPT1 (ENSCPBG00000010096)	DENND2D (ENSCPBG00000010092)	MYBPH (ENSCPBG00000010083)	ADORA1 (ENSCPBG00000010079)	MYOG (ENSCPBG00000010076) ##22	PPFIA4 (ENSCPBG00000010053) ##25	TMEM183A (ENSCPBG00000010040)
Chinese turtle	MODERN SPECIES	500	RNPEP (ENSPSIG00000010050)	ELF3 (ENSPSIG00000010841)	GPR37L1 (ENSPSIG00000011257)	ARL8A (ENSPSIG00000011488)	PTPN7 (ENSPSIG00000011667)	ENSPSIG00000011801	LGR6 (ENSPSIG00000011884)	UBE2T (ENSPSIG00000012646)	ENSPSIG00000012858	LRIF1 (ENSPSIG00000013752)	DRAM2 (ENSPSIG00000013829)	CEPT1 (ENSPSIG00000013838)	DENND2D (ENSPSIG00000014729)	MYBPH (ENSPSIG00000015146)	ADORA1 (ENSPSIG00000015223)	MYOG (ENSPSIG00000015236) ##22	PPFIA4 (ENSPSIG00000015466) ##25	TMEM183A (ENSPSIG00000016458)	ENSPSIG00000016461	CACNA1S (ENSPSIG00000016471)	KIF21B (ENSPSIG00000017820)
Lepidosauria	ANCESTRAL SPECIES	6	ENSGT00940000160431	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT00940000159939	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000154563	ENSGT00390000017780.f	ENSGT00940000159825	ENSGT00730000111186	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224	ENSGT00940000158190	ENSGT00940000158315	ENSGT00390000015972
Episquamata	ANCESTRAL SPECIES	1	ENSGT00940000160431	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT00940000159939	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000017780.f	ENSGT00940000159825	ENSGT00730000111186	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224	ENSGT00940000158190	ENSGT00940000158315	ENSGT00390000015972	ENSGT00940000160254
Laterata	ANCESTRAL SPECIES	3	ENSGT00940000160431	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT00940000159939	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000017780.f	ENSGT00940000159825	ENSGT00730000111186	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224	ENSGT00940000158190	ENSGT00940000158315	ENSGT00390000015972	ENSGT00940000160254
Argentine black and white tegu	MODERN SPECIES	28	RNPEP (ENSSMRG00000003643)	ELF3 (ENSSMRG00000003640)	GPR37L1 (ENSSMRG00000003636)	ARL8A (ENSSMRG00000003634)	PTPN7 (ENSSMRG00000003633)	ENSSMRG00000003625	LGR6 (ENSSMRG00000003621)	UBE2T (ENSSMRG00000003614)	ENSSMRG00000003610	LRIF1 (ENSSMRG00000003606)	DRAM2 (ENSSMRG00000003600)	CEPT1 (ENSSMRG00000003595)	DENND2D (ENSSMRG00000003589)	MYBPH (ENSSMRG00000003583)	ADORA1 (ENSSMRG00000003578)	MYOG (ENSSMRG00000003566) ##22	PPFIA4 (ENSSMRG00000003527) ##25	TMEM183A (ENSSMRG00000003520)	ENSSMRG00000003510	ENSSMRG00000003339	TIMM17A (ENSSMRG00000003329)	ENSSMRG00000003325	SHISA4 (ENSSMRG00000003322)	KLHL12 (ENSSMRG00000003316)	RABIF (ENSSMRG00000003302)	ENSSMRG00000003292	KDM5B (ENSSMRG00000003284)	IPO9 (ENSSMRG00000003276)	LZTR1 (ENSSMRG00000003263)	MMP24 (ENSSMRG00000003255)	EIF6 (ENSSMRG00000003157)
Common wall lizard	MODERN SPECIES	14	ELF3 (ENSPMRG00000003684)	GPR37L1 (ENSPMRG00000003690)	ARL8A (ENSPMRG00000003695)	PTPN7 (ENSPMRG00000003714)	ENSPMRG00000003722	LGR6 (ENSPMRG00000003735)	ENSPMRG00000003744	UBE2T (ENSPMRG00000003750)	ENSPMRG00000003761	LRIF1 (ENSPMRG00000003766)	DRAM2 (ENSPMRG00000003772)	CEPT1 (ENSPMRG00000003781)	DENND2D (ENSPMRG00000003790)	MYBPH (ENSPMRG00000003798)	ADORA1 (ENSPMRG00000003805)	MYOG (ENSPMRG00000003810) ##22	PPFIA4 (ENSPMRG00000003822) ##25	TMEM183A (ENSPMRG00000003834)	ENSPMRG00000003840	ENSPMRG00000003842	TIMM17A (ENSPMRG00000003848)	LMOD1 (ENSPMRG00000003852)	SHISA4 (ENSPMRG00000003858)	ENSPMRG00000003867	RABIF (ENSPMRG00000003872)	ENSPMRG00000003877	KDM5B (ENSPMRG00000004351)	ENSPMRG00000006872	IPO9 (ENSPMRG00000007066)	LZTR1 (ENSPMRG00000007687)	MMP24 (ENSPMRG00000007849)
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00940000160431	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT00940000159939	ENSGT00940000157365	ENSGT00940000165883	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000017780.f	ENSGT00940000159825	ENSGT00730000111186	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224	ENSGT00940000158190	ENSGT00940000158315	ENSGT00390000015972	ENSGT00940000160254
Elapidae	ANCESTRAL SPECIES	1	ENSGT00940000156637	ENSGT00940000160431	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT00940000159939	ENSGT00940000157365	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000017780.f	ENSGT00940000159825	ENSGT00730000111186	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224	ENSGT00940000158190	ENSGT00940000158315	ENSGT00390000015972	ENSGT00940000160254
Indian cobra	MODERN SPECIES	2	RNPEP (ENSNNAG00000017525)	ELF3 (ENSNNAG00000017518)	GPR37L1 (ENSNNAG00000017515)	ARL8A (ENSNNAG00000017510)	ENSNNAG00000017501	PTPN7 (ENSNNAG00000017494)	ENSNNAG00000017432	LGR6 (ENSNNAG00000017395)	UBE2T (ENSNNAG00000017379)	LRIF1 (ENSNNAG00000017365)	DRAM2 (ENSNNAG00000017351)	CEPT1 (ENSNNAG00000017338)	DENND2D (ENSNNAG00000017332)	MYBPH (ENSNNAG00000017322)	ADORA1 (ENSNNAG00000017318)	MYOG (ENSNNAG00000017315) ##22	PPFIA4 (ENSNNAG00000017261) ##25	TMEM183A (ENSNNAG00000017244)	ENSNNAG00000017237	TIMM17A (ENSNNAG00000017231)	ENSNNAG00000017223	SHISA4 (ENSNNAG00000017219)	KLHL12 (ENSNNAG00000017214)	ENSNNAG00000017208	ENSNNAG00000017203	KDM5B (ENSNNAG00000017160)	IPO9 (ENSNNAG00000017063)	LZTR1 (ENSNNAG00000017024)	MMP24 (ENSNNAG00000017012)	EIF6 (ENSNNAG00000017000)	FAM83C (ENSNNAG00000016961)
Elapidae_a	ANCESTRAL SPECIES	3	ENSGT00940000156637	ENSGT00940000160431	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT00940000159939	ENSGT00940000157365	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000017780.f	ENSGT00940000159825	ENSGT00730000111186	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224	ENSGT00940000158190	ENSGT00940000158315	ENSGT00390000015972	ENSGT00940000160254
Acanthophiinae	ANCESTRAL SPECIES	2	ENSGT00940000156637	ENSGT00940000160431	ENSGT00940000158955	ENSGT01100000263518.B.b.a	ENSGT00940000159657.d	ENSGT00940000160979	ENSGT00940000164079	ENSGT00940000159939	ENSGT00940000157365	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00390000017780.f	ENSGT00940000159825	ENSGT00730000111186	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00390000008224	ENSGT00940000158190	ENSGT00940000158315	ENSGT00390000015972	ENSGT00940000160254
Mainland tiger snake	MODERN SPECIES	141	RNPEP (ENSNSUG00000002228)	ELF3 (ENSNSUG00000002509)	ENSNSUG00000002511	GPR37L1 (ENSNSUG00000002512)	ARL8A (ENSNSUG00000002513)	PTPN7 (ENSNSUG00000002638)	ENSNSUG00000002648	ENSNSUG00000002668	UBE2T (ENSNSUG00000002669)	LRIF1 (ENSNSUG00000002682)	DRAM2 (ENSNSUG00000002691)	CEPT1 (ENSNSUG00000002752)	DENND2D (ENSNSUG00000002754)	MYBPH (ENSNSUG00000002764)	ADORA1 (ENSNSUG00000002775)	MYOG (ENSNSUG00000002790) ##22	PPFIA4 (ENSNSUG00000002823) ##25	TMEM183A (ENSNSUG00000002831)	ENSNSUG00000002835	TIMM17A (ENSNSUG00000002838)	LMOD1 (ENSNSUG00000002844)	SHISA4 (ENSNSUG00000002846)	KLHL12 (ENSNSUG00000002854)	RABIF (ENSNSUG00000002925)	ENSNSUG00000002926	KDM5B (ENSNSUG00000002933)	IPO9 (ENSNSUG00000002962)	LZTR1 (ENSNSUG00000003520)	MMP24 (ENSNSUG00000003827)
Eastern brown snake	MODERN SPECIES	8												CEPT1 (ENSPTXG00000001780)	DENND2D (ENSPTXG00000001778)	MYBPH (ENSPTXG00000001774)	ADORA1 (ENSPTXG00000001741)	MYOG (ENSPTXG00000001738) ##22	PPFIA4 (ENSPTXG00000001734) ##25	TMEM183A (ENSPTXG00000001729)	ENSPTXG00000001727	TIMM17A (ENSPTXG00000001725)	LMOD1 (ENSPTXG00000001723)	SHISA4 (ENSPTXG00000001720)	KLHL12 (ENSPTXG00000001717)	RABIF (ENSPTXG00000001713)	ENSPTXG00000001711	KDM5B (ENSPTXG00000001709)	IPO9 (ENSPTXG00000001707)	LZTR1 (ENSPTXG00000001705)	MMP24 (ENSPTXG00000001703)	EIF6 (ENSPTXG00000001702)	ENSPTXG00000001701
Blue-lipped sea krait	MODERN SPECIES	10012																MYOG (ENSLLTG00000006281) ##22
Lizard	MODERN SPECIES	3	GPR37L1 (ENSACAG00000035102)	ARL8A (ENSACAG00000004202)	ENSACAG00000040586	PTPN7 (ENSACAG00000004209)	ENSACAG00000004413	ENSACAG00000044423	LGR6 (ENSACAG00000004485)	UBE2T (ENSACAG00000028388)	ENSACAG00000004583	ENSACAG00000004629	DRAM2 (ENSACAG00000029049)	ENSACAG00000004632	DENND2D (ENSACAG00000004638)	MYBPH (ENSACAG00000004704)	ADORA1 (ENSACAG00000004809)	MYOG (ENSACAG00000004818) ##22	PPFIA4 (ENSACAG00000004833) ##25	ENSACAG00000004942	ENSACAG00000004978	ENSACAG00000004983	TIMM17A (ENSACAG00000004996)	ENSACAG00000005019	SHISA4 (ENSACAG00000005028)	ENSACAG00000027342	KLHL12 (ENSACAG00000005031)	ENSACAG00000005095	ENSACAG00000005101	KDM5B (ENSACAG00000005107)	ENSACAG00000005261	ENSACAG00000005324	MMP24 (ENSACAG00000005407)
tuatara	MODERN SPECIES	567	GPR37L1 (ENSSPUG00000008018)	ARL8A (ENSSPUG00000007980)	PTPN7 (ENSSPUG00000007973)	ENSSPUG00000007969	ENSSPUG00000007967	ENSSPUG00000007964	LGR6 (ENSSPUG00000007952)	UBE2T (ENSSPUG00000007947)	ENSSPUG00000007932	ENSSPUG00000007925	DRAM2 (ENSSPUG00000007918)	CEPT1 (ENSSPUG00000007900)	DENND2D (ENSSPUG00000007881)	MYBPH (ENSSPUG00000007851)	ADORA1 (ENSSPUG00000007842)	MYOG (ENSSPUG00000007831) ##22	PPFIA4 (ENSSPUG00000007812) ##25	TMEM183A (ENSSPUG00000007801)	ENSSPUG00000007791	ADIPOR1 (ENSSPUG00000007783)	TIMM17A (ENSSPUG00000007776)	LMOD1 (ENSSPUG00000007766)	SHISA4 (ENSSPUG00000007725)	KLHL12 (ENSSPUG00000007632)	RABIF (ENSSPUG00000007611)	ENSSPUG00000007603	KDM5B (ENSSPUG00000007566)
Mammalia	ANCESTRAL SPECIES	50	ENSGT00390000012818.o.a.a.a.b	ENSGT00390000012818.o.a.b	ENSGT00940000163411	ENSGT00390000012818.o.b	ENSGT00920000149095.a ##36	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Theria	ANCESTRAL SPECIES	12	ENSGT00390000012818.o.a.a.a.a	ENSGT00390000012818.o.a.b	ENSGT00940000163411	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00940000157898	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962.a	ENSGT00940000163962.b	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079
Marsupialia_b	ANCESTRAL SPECIES	6	ENSGT00940000157898	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962.a	ENSGT00940000163962.b	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Diprotodontia	ANCESTRAL SPECIES	7	ENSGT00940000157898	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962.b	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00950000182825.A.a.a	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979	ENSGT00940000159657.d
Diprotodontia_a	ANCESTRAL SPECIES	3	ENSGT00940000157898	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962.b	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00950000182825.A.a.a	ENSGT00940000163962.a	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
koala	MODERN SPECIES	99	REN (ENSPCIG00000017411)	SOX13 (ENSPCIG00000017394)	ETNK2 (ENSPCIG00000017393)	SNRPE (ENSPCIG00000017391)	ENSPCIG00000017389 ##36	ENSPCIG00000017388	ENSPCIG00000035390	OPTC (ENSPCIG00000029537)	PRELP (ENSPCIG00000029536)	FMOD (ENSPCIG00000017607)	BTG2 (ENSPCIG00000029530)	CHIT1 (ENSPCIG00000009967)	CHI3L1 (ENSPCIG00000003122)	MYBPH (ENSPCIG00000036721)	ADORA1 (ENSPCIG00000031634)	MYOG (ENSPCIG00000005915) ##22	PPFIA4 (ENSPCIG00000003510) ##25	TMEM183A (ENSPCIG00000003386)	ENSPCIG00000003372	ENSPCIG00000003357	ADIPOR1 (ENSPCIG00000003351)	KLHL12 (ENSPCIG00000003342)	ENSPCIG00000010099	ENSPCIG00000003319	KDM5B (ENSPCIG00000003240)	SYT2 (ENSPCIG00000001150)	PPP1R12B (ENSPCIG00000027353)	UBE2T (ENSPCIG00000000715)	ENSPCIG00000032073	LGR6 (ENSPCIG00000000724)	ENSPCIG00000004945
Common wonbat	MODERN SPECIES	1114																MYOG (ENSVURG00010002324) ##22	PPFIA4 (ENSVURG00010002332) ##25	TMEM183A (ENSVURG00010002380)	ENSVURG00010002390	CYB5R1 (ENSVURG00010002400)	ADIPOR1 (ENSVURG00010002423)	KLHL12 (ENSVURG00010002447)	ENSVURG00010002500	KDM5B (ENSVURG00010002546)	SYT2 (ENSVURG00010002760)	PPP1R12B (ENSVURG00010002835)	UBE2T (ENSVURG00010003247)	LGR6 (ENSVURG00010003286)	PTPN7 (ENSVURG00010003346)	ARL8A (ENSVURG00010003356)	GPR37L1 (ENSVURG00010003364)
Wallaby	MODERN SPECIES	13924																MYOG (ENSMEUG00000015462) ##22
Tasmanian devil	MODERN SPECIES	3	ENSSHAG00000000422	REN (ENSSHAG00000002610)	ETNK2 (ENSSHAG00000031475)	SOX13 (ENSSHAG00000007118)	SNRPE (ENSSHAG00000030092)	ENSSHAG00000001353 ##36	ENSSHAG00000002596	ATP2B4 (ENSSHAG00000003581)	OPTC (ENSSHAG00000017409)	PRELP (ENSSHAG00000017347)	FMOD (ENSSHAG00000017098)	BTG2 (ENSSHAG00000029267)	CHIT1 (ENSSHAG00000016753)	CHI3L1 (ENSSHAG00000016598)	MYBPH (ENSSHAG00000016559)	MYOG (ENSSHAG00000016307) ##22	ADORA1 (ENSSHAG00000016198)	TMEM183A (ENSSHAG00000028109)	PPFIA4 (ENSSHAG00000016095) ##25	ENSSHAG00000016040	CYB5R1 (ENSSHAG00000015865)	ADIPOR1 (ENSSHAG00000015796)	KLHL12 (ENSSHAG00000015718)	ENSSHAG00000030734	KDM5B (ENSSHAG00000015215)	SYT2 (ENSSHAG00000014567)	ENSSHAG00000030417	ENSSHAG00000013620	UBE2T (ENSSHAG00000013413)	LGR6 (ENSSHAG00000012606)	ENSSHAG00000012326
Opossum	MODERN SPECIES	1	ENSMODG00000040633	ENSMODG00000027863	SNRPE (ENSMODG00000028394)	ENSMODG00000001184 ##36	ENSMODG00000025657	ATP2B4 (ENSMODG00000001137)	OPTC (ENSMODG00000001113)	PRELP (ENSMODG00000001105)	FMOD (ENSMODG00000001094)	BTG2 (ENSMODG00000045198)	CHIT1 (ENSMODG00000001082)	CHI3L1 (ENSMODG00000001065)	MYBPH (ENSMODG00000001040)	ADORA1 (ENSMODG00000001023)	ENSMODG00000041675	MYOG (ENSMODG00000001009) ##22	PPFIA4 (ENSMODG00000000996) ##25	TMEM183A (ENSMODG00000000915)	ENSMODG00000000901	ENSMODG00000029571	CYB5R1 (ENSMODG00000000894)	ADIPOR1 (ENSMODG00000000876)	KLHL12 (ENSMODG00000000855)	RABIF (ENSMODG00000043034)	ENSMODG00000000689	KDM5B (ENSMODG00000000755)	SYT2 (ENSMODG00000000684)	ENSMODG00000028224	ENSMODG00000045317	PPP1R12B (ENSMODG00000000662)	UBE2T (ENSMODG00000000652)
Eutheria	ANCESTRAL SPECIES		ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000163962	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00390000012818.o.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00910000146854	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365
Laurasiatheria	ANCESTRAL SPECIES	25	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00910000146854	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00910000146854	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00390000012818.o.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00910000146854	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.j	ENSGT00940000157365
Carnivora	ANCESTRAL SPECIES	14	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.p	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00910000146854	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.j	ENSGT00940000157365
Caniformia	ANCESTRAL SPECIES	10	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.p	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00910000146854	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.j	ENSGT00940000157365
Canidae	ANCESTRAL SPECIES	73													ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241
Canis_lupus	ANCESTRAL SPECIES	54													ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241
Dog	MODERN SPECIES	35													CHI3L1 (ENSCAFG00845014118)	MYBPH (ENSCAFG00845014155)	ADORA1 (ENSCAFG00845014197)	MYOG (ENSCAFG00845014215) ##22	PPFIA4 (ENSCAFG00845014290) ##25	TMEM183A (ENSCAFG00845014504)	ENSCAFG00845014532	MGAT4F (ENSCAFG00845014563)	CYB5R1 (ENSCAFG00845014655)	ADIPOR1 (ENSCAFG00845014708)	RABIF (ENSCAFG00845014768)	TUBA5 (ENSCAFG00845014789)	ENSCAFG00845014815	KDM5B (ENSCAFG00845014886)	SYT2 (ENSCAFG00845015072)	PPP1R12B (ENSCAFG00845015228)	UBE2T (ENSCAFG00845015432)	LGR6 (ENSCAFG00845015504)	PTPRV (ENSCAFG00845015673)
Dingo	MODERN SPECIES	385													CHI3L1 (ENSCAFG00020014953)	MYBPH (ENSCAFG00020014957)	ADORA1 (ENSCAFG00020014971)	MYOG (ENSCAFG00020014979) ##22	ENSCAFG00020014983 ##25	ENSCAFG00020014998 ##25	TMEM183A (ENSCAFG00020015000)	ENSCAFG00020015009	ENSCAFG00020015011	CYB5R1 (ENSCAFG00020015012)	ADIPOR1 (ENSCAFG00020015023)	KLHL12 (ENSCAFG00020015027)	ENSCAFG00020015030	RABIF (ENSCAFG00020015033)	ENSCAFG00020015035	ENSCAFG00020015038	KDM5B (ENSCAFG00020015100)	SYT2 (ENSCAFG00020016132)	ENSCAFG00020016133
Red fox	MODERN SPECIES	144													CHI3L1 (ENSVVUG00000006776)	MYBPH (ENSVVUG00000006751)	ADORA1 (ENSVVUG00000006744)	MYOG (ENSVVUG00000006734) ##22	PPFIA4 (ENSVVUG00000006701) ##25	TMEM183A (ENSVVUG00000006689)	ENSVVUG00000006675	ENSVVUG00000006667	CYB5R1 (ENSVVUG00000006662)	ADIPOR1 (ENSVVUG00000006657)	KLHL12 (ENSVVUG00000006643)	ENSVVUG00000006635	ENSVVUG00000006630	KDM5B (ENSVVUG00000006575)	SYT2 (ENSVVUG00000006543)	PPP1R12B (ENSVVUG00000006523)	ENSVVUG00000006508	UBE2T (ENSVVUG00000006502)	LGR6 (ENSVVUG00000006495)
Caniformia_b	ANCESTRAL SPECIES	8	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00910000146854	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.j	ENSGT00940000157365
Mustelinae	ANCESTRAL SPECIES	48	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.j	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079
American mink	MODERN SPECIES	41	RENI (ENSNVIG00000016512)	ETNK2 (ENSNVIG00000016495)	SOX13 (ENSNVIG00000016438)	SNRPE (ENSNVIG00000016418)	ENSNVIG00000016363 ##36	LAX1 (ENSNVIG00000016347)	ATP2B4 (ENSNVIG00000016236)	OPTC (ENSNVIG00000016224)	PRELP (ENSNVIG00000016215)	FMOD (ENSNVIG00000016201)	BTG2 (ENSNVIG00000016190)	CHIT1 (ENSNVIG00000016143)	CHI3L1 (ENSNVIG00000016124)	MYBPH (ENSNVIG00000015929)	ADORA1 (ENSNVIG00000015905)	MYOG (ENSNVIG00000015890) ##22	PPFIA4 (ENSNVIG00000015697) ##25	TMEM183A (ENSNVIG00000015657)	ENSNVIG00000015652	CYB5R1 (ENSNVIG00000015637)	ADR1 (ENSNVIG00000015615)	KLHL12 (ENSNVIG00000015524)	ENSNVIG00000015456	ENSNVIG00000015444	KDM5B (ENSNVIG00000014996)	SYT2 (ENSNVIG00000014958)	ENSNVIG00000014900	ENSNVIG00000014849	UBE2T (ENSNVIG00000014828)	LGR6 (ENSNVIG00000014747)	ENSNVIG00000014677
Ferret	MODERN SPECIES	215	SOX13 (ENSMPUG00000011648)	ENSMPUG00000011642	ENSMPUG00000011630 ##36	ZBED6 (ENSMPUG00000019262)	LAX1 (ENSMPUG00000011624)	ATP2B4 (ENSMPUG00000011614)	ENSMPUG00000011609	OPTC (ENSMPUG00000011577)	PRELP (ENSMPUG00000011571)	FMOD (ENSMPUG00000011566)	BTG2 (ENSMPUG00000011561)	CHIT1 (ENSMPUG00000011554)	CHI3L1 (ENSMPUG00000011520)	MYBPH (ENSMPUG00000011512)	ADORA1 (ENSMPUG00000011510)	MYOG (ENSMPUG00000011508) ##22	PPFIA4 (ENSMPUG00000011285) ##25	TMEM183A (ENSMPUG00000011275)	ENSMPUG00000011269	CYB5R1 (ENSMPUG00000011221)	ADIPOR1 (ENSMPUG00000011215)	KLHL12 (ENSMPUG00000011208)	RABIF (ENSMPUG00000011205)	ENSMPUG00000011202	ENSMPUG00000011196	KDM5B (ENSMPUG00000011183)	SYT2 (ENSMPUG00000011176)	PPP1R12B (ENSMPUG00000011165)	UBE2T (ENSMPUG00000011160)	LGR6 (ENSMPUG00000011078)	ENSMPUG00000010995
Ursidae	ANCESTRAL SPECIES	4	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851.f	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00910000146854	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.j	ENSGT00940000157365
Ursus	ANCESTRAL SPECIES	42	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00910000146854	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.j	ENSGT00940000157365
American black bear	MODERN SPECIES	141				ENSUAMG00000005641 ##36	ZBED6 (ENSUAMG00000005643)	LAX1 (ENSUAMG00000005645)	ATP2B4 (ENSUAMG00000005678)	OPTC (ENSUAMG00000006402)	PRELP (ENSUAMG00000006404)	FMOD (ENSUAMG00000006406)	BTG2 (ENSUAMG00000006408)	CHIT1 (ENSUAMG00000006412)	CHI3L1 (ENSUAMG00000006418)	MYBPH (ENSUAMG00000006439)	ADORA1 (ENSUAMG00000006447)	MYOG (ENSUAMG00000006448) ##22	PPFIA4 (ENSUAMG00000006464) ##25	TMEM183A (ENSUAMG00000006501)
Polar bear	MODERN SPECIES	119	ETNK2 (ENSUMAG00000006030)	SOX13 (ENSUMAG00000005881)	ENSUMAG00000005865	SNRPE (ENSUMAG00000005861)	ENSUMAG00000005588 ##36	LAX1 (ENSUMAG00000005538)	ATP2B4 (ENSUMAG00000005514)	OPTC (ENSUMAG00000005511)	PRELP (ENSUMAG00000005510)	FMOD (ENSUMAG00000005504)	BTG2 (ENSUMAG00000005502)	CHIT1 (ENSUMAG00000005499)	CHI3L1 (ENSUMAG00000005495)	ENSUMAG00000005491	ADORA1 (ENSUMAG00000005482)	MYOG (ENSUMAG00000005475) ##22	PPFIA4 (ENSUMAG00000005440) ##25	TMEM183A (ENSUMAG00000005428)	ENSUMAG00000005423	ENSUMAG00000005419	CYB5R1 (ENSUMAG00000005413)	ADIPOR1 (ENSUMAG00000005411)	KLHL12 (ENSUMAG00000005409)	RABIF (ENSUMAG00000005402)	ENSUMAG00000005399	ENSUMAG00000005397	KDM5B (ENSUMAG00000004534)	SYT2 (ENSUMAG00000004419)	ENSUMAG00000004415	ENSUMAG00000004392	UBE2T (ENSUMAG00000004388)
Giant Panda	MODERN SPECIES	18	ENSAMEG00000023880	ENSAMEG00000019873	SNRPE (ENSAMEG00000000882)	ENSAMEG00000030481	ENSAMEG00000000838 ##36	LAX1 (ENSAMEG00000000832)	ATP2B4 (ENSAMEG00000000712)	OPTC (ENSAMEG00000000694)	PRELP (ENSAMEG00000000687)	FMOD (ENSAMEG00000012439)	BTG2 (ENSAMEG00000025361)	CHIT1 (ENSAMEG00000012386)	CHI3L1 (ENSAMEG00000012357)	MYBPH (ENSAMEG00000012332)	ADORA1 (ENSAMEG00000012329)	MYOG (ENSAMEG00000012326) ##22	PPFIA4 (ENSAMEG00000012267) ##25	TMEM183A (ENSAMEG00000012253)	ENSAMEG00000020144	ENSAMEG00000012252	CYB5R1 (ENSAMEG00000012218)	ADIPOR1 (ENSAMEG00000012199)	KLHL12 (ENSAMEG00000012152)	RABIF (ENSAMEG00000024693)	ENSAMEG00000029135	ENSAMEG00000023721	KDM5B (ENSAMEG00000012088)	SYT2 (ENSAMEG00000012070)	PPP1R12B (ENSAMEG00000012065)	UBE2T (ENSAMEG00000011892)	LGR6 (ENSAMEG00000011896)
Felidae	ANCESTRAL SPECIES	11	ENSGT00940000157898	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.p	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a.e ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.j	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079
Panthera	ANCESTRAL SPECIES	19	ENSGT00940000158759	ENSGT00950000182891.a.a.b.a.a.a.b.a.a	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a.e ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.j	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979
Tiger	MODERN SPECIES	245	ENSPTIG00000013863	SOX13 (ENSPTIG00000011164)	ENSPTIG00000002644	SNRPE (ENSPTIG00000010866)	ENSPTIG00000010659	ENSPTIG00000008767 ##36	LAX1 (ENSPTIG00000007022)	ATP2B4 (ENSPTIG00000005453)	OPTC (ENSPTIG00000004163)	PRELP (ENSPTIG00000003289)	FMOD (ENSPTIG00000002004)	BTG2 (ENSPTIG00000000957)	CHIT1 (ENSPTIG00000022090)	CHI3L1 (ENSPTIG00000022077)	ADORA1 (ENSPTIG00000021912)	MYOG (ENSPTIG00000021825) ##22	PPFIA4 (ENSPTIG00000006369) ##25	TMEM183A (ENSPTIG00000002173)	ENSPTIG00000001661	CYB5R1 (ENSPTIG00000020319)	ADIPOR1 (ENSPTIG00000018075)	KLHL12 (ENSPTIG00000017341)	RABIF (ENSPTIG00000017028)	ENSPTIG00000016676	ENSPTIG00000016371	KDM5B (ENSPTIG00000012262)	SYT2 (ENSPTIG00000009687)	ENSPTIG00000006301	ENSPTIG00000021429	UBE2T (ENSPTIG00000020427)	LGR6 (ENSPTIG00000013251)
Panthera_a	ANCESTRAL SPECIES	19	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00950000182891.a.a.b.a.a.a.b.a.a	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a.e ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.j	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979
lion	MODERN SPECIES	17	SOX13 (ENSPLOG00000021170)	ENSPLOG00000021155	SNRPE (ENSPLOG00000021120)	ENSPLOG00000021070 ##36	ZBED6 (ENSPLOG00000021050)	LAX1 (ENSPLOG00000021029)	ATP2B4 (ENSPLOG00000020956)	OPTC (ENSPLOG00000020899)	PRELP (ENSPLOG00000020882)	FMOD (ENSPLOG00000020864)	BTG2 (ENSPLOG00000020849)	ENSPLOG00000020831	CHIT1 (ENSPLOG00000020814)	CHI3L1 (ENSPLOG00000020758)	ENSPLOG00000020639	MYOG (ENSPLOG00000020619) ##22	PPFIA4 (ENSPLOG00000020467) ##25	TMEM183A (ENSPLOG00000020412)	ENSPLOG00000020400	CYB5R1 (ENSPLOG00000020380)	ADIPOR1 (ENSPLOG00000020357)	KLHL12 (ENSPLOG00000020315)	RABIF (ENSPLOG00000020293)	ENSPLOG00000020271	ENSPLOG00000020256	KDM5B (ENSPLOG00000020041)	SYT2 (ENSPLOG00000019940)	PPP1R12B (ENSPLOG00000019845)	UBE2T (ENSPLOG00000019764)	LGR6 (ENSPLOG00000019580)	PTPN7 (ENSPLOG00000019136)
leopard	MODERN SPECIES	4	ENSPPRG00000020723	ENSPPRG00000024940	ENSPPRG00000024930	ENSPPRG00000024904 ##36	ZBED6 (ENSPPRG00000020731)	LAX1 (ENSPPRG00000024884)	ATP2B4 (ENSPPRG00000024831)	OPTC (ENSPPRG00000024815)	PRELP (ENSPPRG00000024788)	FMOD (ENSPPRG00000024787)	BTG2 (ENSPPRG00000024775)	ENSPPRG00000024734	CHIT1 (ENSPPRG00000024703)	CHI3L1 (ENSPPRG00000024668)	ADORA1 (ENSPPRG00000024577)	MYOG (ENSPPRG00000024546) ##22	ENSPPRG00000024457 ##25	ENSPPRG00000024388 ##25	ENSPPRG00000024154 ##25	ENSPPRG00000024097	ENSPPRG00000020819	CYB5R1 (ENSPPRG00000023989)	ADIPOR1 (ENSPPRG00000023689)	KLHL12 (ENSPPRG00000023567)	RABIF (ENSPPRG00000023405)	ENSPPRG00000023168	ENSPPRG00000023144	KDM5B (ENSPPRG00000023015)	SYT2 (ENSPPRG00000023002)	ENSPPRG00000022669	ENSPPRG00000000196
Cat	MODERN SPECIES	248	ETNK2 (ENSFCAG00000031352)	ENSFCAG00000013548	ENSFCAG00000042558	ENSFCAG00000000872 ##36	ZBED6 (ENSFCAG00000052187)	LAX1 (ENSFCAG00000045244)	ATP2B4 (ENSFCAG00000000870)	OPTC (ENSFCAG00000013116)	PRELP (ENSFCAG00000025207)	FMOD (ENSFCAG00000031151)	BTG2 (ENSFCAG00000043254)	ENSFCAG00000036418	CHIT1 (ENSFCAG00000013111)	CHI3L1 (ENSFCAG00000038254)	ADORA1 (ENSFCAG00000013109)	MYOG (ENSFCAG00000034593) ##22	PPFIA4 (ENSFCAG00000013107) ##25	TMEM183A (ENSFCAG00000013106)	ENSFCAG00000043564	CYB5R1 (ENSFCAG00000042605)	KLHL12 (ENSFCAG00000013103)	RABIF (ENSFCAG00000040709)	TUBA5 (ENSFCAG00000010749)	ENSFCAG00000027194	KDM5B (ENSFCAG00000013102)	SYT2 (ENSFCAG00000000454)	PPP1R12B (ENSFCAG00000039870)	UBE2T (ENSFCAG00000000452)	LGR6 (ENSFCAG00000025618)	PTPRV (ENSFCAG00000051093)	PTPN7 (ENSFCAG00000045465)
Laurasiatheria_c	ANCESTRAL SPECIES	25												ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000183165.b.b	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.j	ENSGT00940000157365	ENSGT00940000159939
Equus	ANCESTRAL SPECIES	41												ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000183165.b.b	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.i.a	ENSGT00940000157067.i.b	ENSGT00940000157365
Horse	MODERN SPECIES	23												CHIT1 (ENSECAG00000011068)	CHI3L1 (ENSECAG00000029465)	MYBPH (ENSECAG00000054077)	ADORA1 (ENSECAG00000017816)	MYOG (ENSECAG00000015955) ##22	PPFIA4 (ENSECAG00000016600) ##25	TMEM183A (ENSECAG00000008661)	ENSECAG00000035669	ENSECAG00000008372	ENSECAG00000008357	CYB5R1 (ENSECAG00000009763)	ADIPOR1 (ENSECAG00000009624)	KLHL12 (ENSECAG00000015828)	ENSECAG00000056045	TUBA5P (ENSECAG00000002714)	KDM5B (ENSECAG00000014268)	SYT2 (ENSECAG00000010960)	ENSECAG00000005576	PPP1R12B (ENSECAG00000023080)	ENSECAG00000051370
Donkey	MODERN SPECIES	23												ENSEASG00005019643	CHI3L1 (ENSEASG00005019650)	MYBPH (ENSEASG00005019653)	ENSEASG00005031825	MYOG (ENSEASG00005019656) ##22	PPFIA4 (ENSEASG00005019660) ##25	TMEM183A (ENSEASG00005019668)	ENSEASG00005019671	ENSEASG00005019673	CYB5R1 (ENSEASG00005019675)	ADIPOR1 (ENSEASG00005019677)	KLHL12 (ENSEASG00005019678)	RABIF (ENSEASG00005019681)	ENSEASG00005038279	ENSEASG00005019686	KDM5B (ENSEASG00005019690)	SYT2 (ENSEASG00005019698)	PPP1R12B (ENSEASG00005019700)	UBE2T (ENSEASG00005019703)	LGR6 (ENSEASG00005019704)
Chiroptera	ANCESTRAL SPECIES	30													ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.j	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979
Megabat	MODERN SPECIES	2694																MYOG (ENSPVAG00000013141) ##22	PPFIA4 (ENSPVAG00000013140) ##25	TMEM183A (ENSPVAG00000013139)	CYB5R1 (ENSPVAG00000013138)	ADIPOR1 (ENSPVAG00000013137)	KLHL12 (ENSPVAG00000013136)	RABIF (ENSPVAG00000013135)
Microchiroptera	ANCESTRAL SPECIES	32													ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067.j	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979
Microbat	MODERN SPECIES	1724															ADORA1 (ENSMLUG00000010287)	MYOG (ENSMLUG00000016127) ##22	PPFIA4 (ENSMLUG00000016109) ##25	TMEM183A (ENSMLUG00000006880)	ENSMLUG00000007489	ENSMLUG00000006892	CYB5R1 (ENSMLUG00000009917)	ENSMLUG00000016102	KLHL12 (ENSMLUG00000006898)	RABIF (ENSMLUG00000017333)	ENSMLUG00000017330	ENSMLUG00000024285
Greater horseshoe bat	MODERN SPECIES	19												CHI3L1 (ENSRFEG00010020040)	MYBPH (ENSRFEG00010020072)	ADORA1 (ENSRFEG00010020201)	PPFIA4 (ENSRFEG00010020236) ##25	MYOG (ENSRFEG00010020334) ##22	TMEM183A (ENSRFEG00010020358)	CYB5R1 (ENSRFEG00010020400)	ADIPOR1 (ENSRFEG00010020422)	KLHL12 (ENSRFEG00010020463)	RABIF (ENSRFEG00010020497)	KDM5B (ENSRFEG00010020669)	SYT2 (ENSRFEG00010021220)	PPP1R12B (ENSRFEG00010021271)	ENSRFEG00010021326	LGR6 (ENSRFEG00010021358)	PTPN7 (ENSRFEG00010021384)	ARL8A (ENSRFEG00010021401)	GPR37L1 (ENSRFEG00010021415)	RNPEP (ENSRFEG00010021429)	TIMM17A (ENSRFEG00010021454)
Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962
Suina	ANCESTRAL SPECIES	15	ENSGT00390000002560	ENSGT01060000248544.a.a.b.a.b	ENSGT00390000013502.b	ENSGT00390000005496	ENSGT00390000015231	ENSGT00940000158056	ENSGT00510000047399	ENSGT00940000155005	ENSGT00940000158561	ENSGT01050000245159	ENSGT00950000183161.b	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000153255.b.a.b.e.b	ENSGT00940000153255.b.a.b.e.a.a	ENSGT00940000153255.b.a.b.f	ENSGT00940000161677.c.b	ENSGT00940000153255.a.j	ENSGT01030000234571.b.b.b.a.a	ENSGT00650000093445	ENSGT00390000016016.A	ENSGT00940000154516.b	ENSGT00940000154774	ENSGT00940000155013	ENSGT00940000157738
Pig	MODERN SPECIES	17	FASLG (ENSSSCG00000022226)	SUCO (ENSSSCG00000015485)	PIGC (ENSSSCG00000015486)	C1orf105 (ENSSSCG00000031550)	DNM3 (ENSSSCG00000038958)	METTL13 (ENSSSCG00000015483)	VAMP4 (ENSSSCG00000015482)	MYOC (ENSSSCG00000035066)	ENSSSCG00000041579	PRRC2C (ENSSSCG00000015480)	CHIT1 (ENSSSCG00000015477)	CHI3L1 (ENSSSCG00000015476)	ENSSSCG00000041477	MYBPH (ENSSSCG00000030681)	ADORA1 (ENSSSCG00000021059)	MYOG (ENSSSCG00000034654) ##22	PPFIA4 (ENSSSCG00000015474) ##25	TMEM183A (ENSSSCG00000015473)	ENSSSCG00000059189	ENSSSCG00000032373	ENSSSCG00000058131	ENSSSCG00000054398	ENSSSCG00000053281	ENSSSCG00000015469	ENSSSCG00000039428	ENSSSCG00000031784	ARHGEF5 (ENSSSCG00000022525)	NOBOX (ENSSSCG00000024977)	TPK1 (ENSSSCG00000015462)	ENSSSCG00000015460	ENSSSCG00000062427
Chacoan peccary	MODERN SPECIES	102	TNFSF4 (ENSCWAG00000018071)	TNFSF18 (ENSCWAG00000018047)	FASLG (ENSCWAG00000018008)	SUCO (ENSCWAG00000017869)	PIGC (ENSCWAG00000017829)	DNM3 (ENSCWAG00000016471)	METTL13 (ENSCWAG00000016350)	VAMP4 (ENSCWAG00000016298)	MYOC (ENSCWAG00000016258)	ENSCWAG00000016233	PRRC2C (ENSCWAG00000015725)	CHIT1 (ENSCWAG00000015470)	CHI3L1 (ENSCWAG00000015360)	MYBPH (ENSCWAG00000015214)	ENSCWAG00000015154	MYOG (ENSCWAG00000015120) ##22	PPFIA4 (ENSCWAG00000014387) ##25	TMEM183A (ENSCWAG00000014319)	ENSCWAG00000014281	ENSCWAG00000014273	ENSCWAG00000014243	ENSCWAG00000014232	ENSCWAG00000014221	ENSCWAG00000014207	ENSCWAG00000014189	ENSCWAG00000014179	ENSCWAG00000014094	NOBOX (ENSCWAG00000013994)	TPK1 (ENSCWAG00000013865)	CNTNAP2 (ENSCWAG00000013584)	CUL1 (ENSCWAG00000012922)
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310
Camelidae	ANCESTRAL SPECIES	52	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310
Arabian camel	MODERN SPECIES	15	ENSCDRG00005016514	ENSCDRG00005016547	ENSCDRG00005016588 ##36	ZBED6 (ENSCDRG00005016653)	LAX1 (ENSCDRG00005016704)	ENSCDRG00005016733	ATP2B4 (ENSCDRG00005017535)	OPTC (ENSCDRG00005022043)	PRELP (ENSCDRG00005022045)	FMOD (ENSCDRG00005022049)	BTG2 (ENSCDRG00005022052)	CHIT1 (ENSCDRG00005022056)	CHI3L1 (ENSCDRG00005022058)	MYBPH (ENSCDRG00005022060)	ADORA1 (ENSCDRG00005022066)	MYOG (ENSCDRG00005022070) ##22	PPFIA4 (ENSCDRG00005022075) ##25	TMEM183A (ENSCDRG00005022083)
Alpaca	MODERN SPECIES	899																MYOG (ENSVPAG00000010566) ##22	ENSVPAG00000010565 ##25
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT01070000254179	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310
Cetacea	ANCESTRAL SPECIES		ENSGT00940000158759	ENSGT01070000254179	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310
Odontoceti	ANCESTRAL SPECIES		ENSGT00910000147945	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000156661	ENSGT00950000183122.A	ENSGT00390000000747	ENSGT00950000182994.A.n.b	ENSGT00960000192543	ENSGT00940000160037	ENSGT00510000047676	ENSGT00940000161852	ENSGT00390000008496.j.a.a.b	ENSGT00390000008164.d	ENSGT00950000183059.b.a.b	ENSGT00940000174587	ENSGT00940000155103.a.b
Monodontidae	ANCESTRAL SPECIES		ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000156422.z	ENSGT00940000156661	ENSGT00950000183122.A	ENSGT00390000000747	ENSGT00950000182994.A.n.b	ENSGT00960000192543	ENSGT00940000160037	ENSGT00510000047676	ENSGT00940000161852	ENSGT00390000008496.j.a.a.b	ENSGT00390000008164.d	ENSGT00950000183059.b.a.b	ENSGT00940000174587
Narwhal	MODERN SPECIES	304	ENSMMNG00015003981	ENSMMNG00015003968	ENSMMNG00015003960	ENSMMNG00015003934 ##36	ZBED6 (ENSMMNG00015003917)	LAX1 (ENSMMNG00015003899)	ATP2B4 (ENSMMNG00015003852)	OPTC (ENSMMNG00015003805)	PRELP (ENSMMNG00015003769)	FMOD (ENSMMNG00015003756)	BTG2 (ENSMMNG00015003738)	CHIT1 (ENSMMNG00015003706)	CHI3L1 (ENSMMNG00015003658)	MYBPH (ENSMMNG00015003541)	ADORA1 (ENSMMNG00015003513)	MYOG (ENSMMNG00015003492) ##22	PPFIA4 (ENSMMNG00015003458) ##25	TMEM183A (ENSMMNG00015003415)	ENSMMNG00015003390	RGS7 (ENSMMNG00015003213)	FH (ENSMMNG00015003102)	KMO (ENSMMNG00015002991)	CHML (ENSMMNG00015002946)	ENSMMNG00015002941	WDR64 (ENSMMNG00015002862)	EXO1 (ENSMMNG00015002760)	MAP1LC3C (ENSMMNG00015002739)	ENSMMNG00015002733	ENSMMNG00015002712	PLD5 (ENSMMNG00015002650)	ENSMMNG00015002619
Beluga whale	MODERN SPECIES	27	ETNK2 (ENSDLEG00000005755)	SOX13 (ENSDLEG00000005766)	SNRPE (ENSDLEG00000005818)	ENSDLEG00000005830 ##36	ZBED6 (ENSDLEG00000005867)	LAX1 (ENSDLEG00000005876)	ATP2B4 (ENSDLEG00000005910)	OPTC (ENSDLEG00000005985)	PRELP (ENSDLEG00000005993)	FMOD (ENSDLEG00000005997)	BTG2 (ENSDLEG00000006002)	ENSDLEG00000006009	CHI3L1 (ENSDLEG00000006019)	MYBPH (ENSDLEG00000006056)	ADORA1 (ENSDLEG00000006076)	MYOG (ENSDLEG00000006080) ##22	PPFIA4 (ENSDLEG00000006102) ##25	TMEM183A (ENSDLEG00000006175)	NLRP3 (ENSDLEG00000006183)	ZNF496 (ENSDLEG00000006189)	ENSDLEG00000006198	ENSDLEG00000006205	ENSDLEG00000006210	TRIM52 (ENSDLEG00000006217)	RACK1 (ENSDLEG00000006233)	TRIM41 (ENSDLEG00000006284)	TRIM7 (ENSDLEG00000006294)	ENSDLEG00000006298	ENSDLEG00000006302	BTNL9 (ENSDLEG00000006307)	ZFP62 (ENSDLEG00000006310)
Vaquita	MODERN SPECIES		ETNK2 (ENSPSNG00000000344)	SOX13 (ENSPSNG00000000405)	ENSPSNG00000000428	SNRPE (ENSPSNG00000000449)	ENSPSNG00000000490 ##36	LAX1 (ENSPSNG00000000538)	ATP2B4 (ENSPSNG00000000578)	OPTC (ENSPSNG00000000731)	PRELP (ENSPSNG00000000625)	FMOD (ENSPSNG00000000771)	BTG2 (ENSPSNG00000000796)	ENSPSNG00000000806	ENSPSNG00000000822	MYBPH (ENSPSNG00000000847)	ADORA1 (ENSPSNG00000000886)	MYOG (ENSPSNG00000000902) ##22	PPFIA4 (ENSPSNG00000000975) ##25	TMEM183A (ENSPSNG00000001164)	ENSPSNG00000001192	ENSPSNG00000001209	ENSPSNG00000001221	RGS7 (ENSPSNG00000001350)	FH (ENSPSNG00000001550)	KMO (ENSPSNG00000001618)	CHML (ENSPSNG00000001704)	ENSPSNG00000001713	WDR64 (ENSPSNG00000001764)	EXO1 (ENSPSNG00000001879)	MAP1LC3C (ENSPSNG00000001915)	ENSPSNG00000001924	ENSPSNG00000001933
Dolphin	MODERN SPECIES	1447																MYOG (ENSTTRG00000000710) ##22	PPFIA4 (ENSTTRG00000000708) ##25	TMEM183A (ENSTTRG00000000706)
Sperm whale	MODERN SPECIES	15	PIK3C2B (ENSPCTG00005018283)	PPP1R15B (ENSPCTG00005018955)	ENSPCTG00005018991	ENSPCTG00005019027	ENSPCTG00005019063	SOX13 (ENSPCTG00005019092)	SNRPE (ENSPCTG00005019205)	ZC3H11A (ENSPCTG00005019261) ##36	ZBED6 (ENSPCTG00005019322)	LAX1 (ENSPCTG00005019329)	ATP2B4 (ENSPCTG00005019393)	FMOD (ENSPCTG00005019485)	BTG2 (ENSPCTG00005019521)	CHI3L1 (ENSPCTG00005019554)	ENSPCTG00005019637	MYOG (ENSPCTG00005019656) ##22	PPFIA4 (ENSPCTG00005019711) ##25	TMEM183A (ENSPCTG00005020353)	FMO2 (ENSPCTG00005020397)	ENSPCTG00005020450	FMO4 (ENSPCTG00005020482)	PRRC2C (ENSPCTG00005008627)	ENSPCTG00005009616	MYOC (ENSPCTG00005009661)	VAMP4 (ENSPCTG00005009706)	EEF1AKNMT (ENSPCTG00005009783)	DNM3 (ENSPCTG00005009895)	ENSPCTG00005010024	PIGC (ENSPCTG00005010048)	C1orf105 (ENSPCTG00005010058)	SUCO (ENSPCTG00005010122)
Blue whale	MODERN SPECIES	14	ATP13A1 (ENSBMSG00010002333)	ENSBMSG00010002309	OR7C1 (ENSBMSG00010002299)	ENSBMSG00010002290	ENSBMSG00010002274	ENSBMSG00010002262	ZNF317 (ENSBMSG00010002252)	ENSBMSG00010002239	OR7G3 (ENSBMSG00010002228)	ENSBMSG00010002222	ENSBMSG00010002204	ENSBMSG00010002193	CHI3L1 (ENSBMSG00010002172)	MYBPH (ENSBMSG00010002132)	ENSBMSG00010002106	MYOG (ENSBMSG00010002092) ##22	PPFIA4 (ENSBMSG00010001825) ##25	TMEM183A (ENSBMSG00010001791)	ENSBMSG00010001771	ENSBMSG00010001762	ENSBMSG00010001707	ENSBMSG00010001680	CYP4F22 (ENSBMSG00010001655)	PGLYRP2 (ENSBMSG00010001628)	RASAL3 (ENSBMSG00010001602)	WIZ (ENSBMSG00010001410)	AKAP8L (ENSBMSG00010001317)	AKAP8 (ENSBMSG00010001297)	BRD4 (ENSBMSG00010001216)	EPHX3 (ENSBMSG00010001163)	NOTCH3 (ENSBMSG00010001081)
Pecora	ANCESTRAL SPECIES	22	ENSGT00390000012818.o.a.a.a.a	ENSGT01070000254179	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310
Yarkand deer	MODERN SPECIES	5	ETNK2 (ENSCHYG00000011580)	SOX13 (ENSCHYG00000011156)	ENSCHYG00000011037	ENSCHYG00000011006	ENSCHYG00000010985	ENSCHYG00000010851 ##36	ZBED6 (ENSCHYG00000010836)	LAX1 (ENSCHYG00000010802)	ATP2B4 (ENSCHYG00000010396)	OPTC (ENSCHYG00000010312)	PRELP (ENSCHYG00000010271)	FMOD (ENSCHYG00000010210)	BTG2 (ENSCHYG00000010182)	MYBPH (ENSCHYG00000009685)	ADORA1 (ENSCHYG00000009533)	MYOG (ENSCHYG00000009462) ##22	PPFIA4 (ENSCHYG00000009063) ##25	TMEM183A (ENSCHYG00000008917)
Percora_a	ANCESTRAL SPECIES	15	ENSGT00390000012818.o.a.a.a.a	ENSGT01070000254179	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310
Siberian musk deer	MODERN SPECIES	123	SOX13 (ENSMMSG00000002897)	ENSMMSG00000002836	SNRPE (ENSMMSG00000002813)	ENSMMSG00000002783 ##36	ZBED6 (ENSMMSG00000002768)	LAX1 (ENSMMSG00000002752)	ATP2B4 (ENSMMSG00000002663)	OPTC (ENSMMSG00000002629)	PRELP (ENSMMSG00000002612)	FMOD (ENSMMSG00000002597)	BTG2 (ENSMMSG00000002581)	ENSMMSG00000002558	CHI3L1 (ENSMMSG00000002538)	MYBPH (ENSMMSG00000002501)	ADORA1 (ENSMMSG00000002460)	MYOG (ENSMMSG00000002431) ##22	PPFIA4 (ENSMMSG00000002394) ##25	TMEM183A (ENSMMSG00000002361)	ENSMMSG00000002349	ENSMMSG00000002339	ENSMMSG00000002330	ENSMMSG00000002319	ENSMMSG00000002301	ENSMMSG00000002293	ENSMMSG00000002286
Bovidae	ANCESTRAL SPECIES	15	ENSGT00390000012818.o.a.a.a.a	ENSGT01070000254179	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310
Caprinae	ANCESTRAL SPECIES	12	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.a	ENSGT01010000222851	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063.a	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310
Goat	MODERN SPECIES	7	ENSCHIG00000018181	SOX13 (ENSCHIG00000012959)	SNRPE (ENSCHIG00000024013)	ENSCHIG00000012149 ##36	ZBED6 (ENSCHIG00000011089)	ENSCHIG00000019212	ENSCHIG00000023819	ENSCHIG00000011811	OPTC (ENSCHIG00000022869)	PRELP (ENSCHIG00000015209)	FMOD (ENSCHIG00000026263)	BTG2 (ENSCHIG00000017484)	CHI3L1 (ENSCHIG00000003384)	MYBPH (ENSCHIG00000017519)	ADORA1 (ENSCHIG00000010182)	MYOG (ENSCHIG00000021331) ##22	PPFIA4 (ENSCHIG00000011499) ##25	TMEM183A (ENSCHIG00000019808)	ENSCHIG00000014347	ENSCHIG00000002879	ENSCHIG00000019934
Rambouillet Sheep	MODERN SPECIES	3	ENSOARG00020004186	SOX13 (ENSOARG00020004125)	ENSOARG00020004077	ENSOARG00020004061	ZC3H11A (ENSOARG00020004029) ##36	ENSOARG00020004001	ENSOARG00020003975	ATP2B4 (ENSOARG00020003931)	OPTC (ENSOARG00020003879)	PRELP (ENSOARG00020003850)	FMOD (ENSOARG00020003825)	CHI3L1 (ENSOARG00020003795)	BTG2 (ENSOARG00020003772)	MYBPH (ENSOARG00020003709)	ENSOARG00020003671	MYOG (ENSOARG00020003647) ##22	PPFIA4 (ENSOARG00020003249) ##25	TMEM183A (ENSOARG00020003175)
Bovinae	ANCESTRAL SPECIES	12	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT01100000264093	ENSGT00390000005568.gb.b.a.a	ENSGT00390000004755.sb.b	ENSGT01010000222906.f	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT01050000244815.A.c.a.a.b.a.a.a.b.d	ENSGT01050000244815.A.c.a.a.b.a.b	ENSGT01100000263496.C.c.a.t	ENSGT01100000263496.C.c.b.c.a.k	ENSGT01100000263496.C.c.a.s.b	ENSGT01100000263496.D.b.a.f	ENSGT01100000263496.D.a.v
Bos	ANCESTRAL SPECIES	12	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT01100000264093	ENSGT00390000005568.gb.b.a.a	ENSGT00390000004755.sb.b	ENSGT01010000222906.f	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT01050000244815.A.c.a.a.b.a.a.a.b.d	ENSGT01050000244815.A.c.a.a.b.a.b.q	ENSGT01100000263496.C.c.a.t	ENSGT01100000263496.C.c.b.c.a.k	ENSGT01100000263496.C.c.a.s.b	ENSGT01100000263496.D.a.v
Bos_b	ANCESTRAL SPECIES	9	ENSGT00920000149095.a ##36	ENSGT01100000263481.n.a.b.b.a.b.b.b.b.b.a	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT01100000264093	ENSGT00390000005568.gb.b.a.a	ENSGT00390000004755.sb.b	ENSGT01010000222906.f	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT01100000263496.C.c.b.c.a.k	ENSGT01100000263496.C.c.a.s.b	ENSGT01100000263496.D.a.v
Hybrid Bos Indicus	MODERN SPECIES	7	ENSBIXG00005013483 ##36	ENSBIXG00005013493	LAX1 (ENSBIXG00005013523)	ATP2B4 (ENSBIXG00005000259)	OPTC (ENSBIXG00005013680)	PRELP (ENSBIXG00005013691)	FMOD (ENSBIXG00005001683)	BTG2 (ENSBIXG00005013721)	ENSBIXG00005013733	CHI3L1 (ENSBIXG00005013821)	ADORA1 (ENSBIXG00005013876)	ENSBIXG00005013899	ENSBIXG00005013906	ENSBIXG00005013911	ENSBIXG00005013924	MYOG (ENSBIXG00005013943) ##22	PPFIA4 (ENSBIXG00005014190) ##25	ENSBIXG00005006218	ENSBIXG00005005705	ENSBIXG00005014306
Cow	MODERN SPECIES	7	ENSBTAG00000050925	ZC3H11A (ENSBTAG00000017352) ##36	ENSBTAG00000053471	LAX1 (ENSBTAG00000012349)	ATP2B4 (ENSBTAG00000014059)	OPTC (ENSBTAG00000013764)	PRELP (ENSBTAG00000017834)	FMOD (ENSBTAG00000014912)	BTG2 (ENSBTAG00000015711)	CHI3L1 (ENSBTAG00000018223)	MYBPH (ENSBTAG00000011465)	ADORA1 (ENSBTAG00000011461)	ENSBTAG00000050274	ENSBTAG00000048925	ENSBTAG00000049875	MYOG (ENSBTAG00000006030) ##22	PPFIA4 (ENSBTAG00000015885) ##25	TMEM183A (ENSBTAG00000002874)	OR5W33 (ENSBTAG00000039944)	OR5W1 (ENSBTAG00000015517)	OR5L1C (ENSBTAG00000035659)
Bos_a	ANCESTRAL SPECIES	58	ENSGT01010000222851	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00390000005568.gb.b.a.a	ENSGT00390000004755.sb.b	ENSGT01010000222906.f	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT01050000244815.A.c.a.a.b.a.a.a.b.d	ENSGT01050000244815.A.c.a.a.b.a.b.q	ENSGT01100000263496.C.c.a.t
Wild yak	MODERN SPECIES	745														ENSBMUG00000004598	ENSBMUG00000004606	MYOG (ENSBMUG00000004613) ##22	PPFIA4 (ENSBMUG00000004670) ##25	TMEM183A (ENSBMUG00000004740)	ENSBMUG00000004749	ENSBMUG00000004769
Domestic yak	MODERN SPECIES	5	ENSBGRG00000008286	ENSBGRG00000008107 ##36	ZBED6 (ENSBGRG00000008085)	LAX1 (ENSBGRG00000008055)	ATP2B4 (ENSBGRG00000007893)	OPTC (ENSBGRG00000007805)	PRELP (ENSBGRG00000007735)	FMOD (ENSBGRG00000026323)	BTG2 (ENSBGRG00000026320)	CHI3L1 (ENSBGRG00000026316)	MYBPH (ENSBGRG00000026302)	ADORA1 (ENSBGRG00000026296)	ENSBGRG00000026283	ENSBGRG00000026277	ENSBGRG00000026271	MYOG (ENSBGRG00000026269) ##22	PPFIA4 (ENSBGRG00000026254) ##25	TMEM183A (ENSBGRG00000026236)	ENSBGRG00000026232	ENSBGRG00000026223	TNNT2 (ENSBGRG00000026185)	ENSBGRG00000026162	TNNI1 (ENSBGRG00000026141)	PHLDA3 (ENSBGRG00000026131)	CSRP1 (ENSBGRG00000026123)	ENSBGRG00000026117	NAV1 (ENSBGRG00000026038)	IPO9 (ENSBGRG00000025970)	SHISA4 (ENSBGRG00000025959)	LMOD1 (ENSBGRG00000025951)	TIMM17A (ENSBGRG00000025944)
American bison	MODERN SPECIES	3252	ZBED6 (ENSBBBG00000017218)	LAX1 (ENSBBBG00000004262)	ATP2B4 (ENSBBBG00000007498)	OPTC (ENSBBBG00000017375)	PRELP (ENSBBBG00000008600)	FMOD (ENSBBBG00000017404)	BTG2 (ENSBBBG00000017412)	CHI3L1 (ENSBBBG00000004313)	MYBPH (ENSBBBG00000006776)	ENSBBBG00000017457	ENSBBBG00000017467	ENSBBBG00000017482	ENSBBBG00000007948	ENSBBBG00000017490	ENSBBBG00000017492	MYOG (ENSBBBG00000017504) ##22	PPFIA4 (ENSBBBG00000017646) ##25	TMEM183A (ENSBBBG00000008515)	ENSBBBG00000017688	ENSBBBG00000017696	ENSBBBG00000017705	OR5D16 (ENSBBBG00000017716)	ENSBBBG00000008348
Eulipotyphla	ANCESTRAL SPECIES	1065																ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25
Hedgehog	MODERN SPECIES	4083																MYOG (ENSEEUG00000011702) ##22	PPFIA4 (ENSEEUG00000011376) ##25
Common shrew	MODERN SPECIES	1614																MYOG (ENSSARG00000002844) ##22
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00390000012818.o.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00910000146854	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365
Primates	ANCESTRAL SPECIES	7	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00910000146854	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939
Bushbaby	MODERN SPECIES	170	SOX13 (ENSOGAG00000011880)	ENSOGAG00000030218	SNRPE (ENSOGAG00000004309)	ENSOGAG00000000243 ##36	ZBED6 (ENSOGAG00000032362)	ENSOGAG00000000242	ATP2B4 (ENSOGAG00000000241)	OPTC (ENSOGAG00000000240)	PRELP (ENSOGAG00000032261)	FMOD (ENSOGAG00000000239)	BTG2 (ENSOGAG00000025083)	CHIT1 (ENSOGAG00000000926)	CHI3L1 (ENSOGAG00000000923)	MYBPH (ENSOGAG00000000919)	ADORA1 (ENSOGAG00000000918)	MYOG (ENSOGAG00000029573) ##22	PPFIA4 (ENSOGAG00000000913) ##25	TMEM183A (ENSOGAG00000000911)	ENSOGAG00000031654	ENSOGAG00000033450	CYB5R1 (ENSOGAG00000011138)	ADIPOR1 (ENSOGAG00000033821)	ENSOGAG00000027208	ENSOGAG00000014771	ENSOGAG00000034326	ENSOGAG00000030995	KDM5B (ENSOGAG00000007102)	SYT2 (ENSOGAG00000001883)	PPP1R12B (ENSOGAG00000000591)	UBE2T (ENSOGAG00000029029)	LGR6 (ENSOGAG00000001875)
Lemuriformes	ANCESTRAL SPECIES	26	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939
Lemuriformes_a	ANCESTRAL SPECIES	12	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979
Coquerels sifaka	MODERN SPECIES	646				ENSPCOG00000021529	ENSPCOG00000022660 ##36	LAX1 (ENSPCOG00000022686)	ATP2B4 (ENSPCOG00000018732)	OPTC (ENSPCOG00000027576)	PRELP (ENSPCOG00000024242)	FMOD (ENSPCOG00000028281)	BTG2 (ENSPCOG00000022936)	CHIT1 (ENSPCOG00000022387)	CHI3L1 (ENSPCOG00000017028)	MYBPH (ENSPCOG00000027380)	ADORA1 (ENSPCOG00000025087)	MYOG (ENSPCOG00000012470) ##22	PPFIA4 (ENSPCOG00000018594) ##25	TMEM183A (ENSPCOG00000027295)	CYB5R1 (ENSPCOG00000024279)	ADIPOR1 (ENSPCOG00000019357)	ENSPCOG00000015963	RABIF (ENSPCOG00000018312)	ENSPCOG00000009173	ENSPCOG00000028708	KDM5B (ENSPCOG00000018650)	SYT2 (ENSPCOG00000016003)	ENSPCOG00000028261	PPP1R12B (ENSPCOG00000000892)	UBE2T (ENSPCOG00000023947)	LGR6 (ENSPCOG00000014251)	PTPN7 (ENSPCOG00000025248)
Greater bamboo lemur	MODERN SPECIES	19	SOX13 (ENSPSMG00000004006)	SNRPE (ENSPSMG00000003970)	ENSPSMG00000003815 ##36	ZBED6 (ENSPSMG00000003690)	LAX1 (ENSPSMG00000003685)	ATP2B4 (ENSPSMG00000003361)	OPTC (ENSPSMG00000003150)	PRELP (ENSPSMG00000003143)	FMOD (ENSPSMG00000003138)	BTG2 (ENSPSMG00000003135)	CHIT1 (ENSPSMG00000003124)	CHI3L1 (ENSPSMG00000003099)	MYBPH (ENSPSMG00000003049)	ENSPSMG00000003027	ENSPSMG00000003026	MYOG (ENSPSMG00000003024) ##22	PPFIA4 (ENSPSMG00000002896) ##25	TMEM183A (ENSPSMG00000002767)	ENSPSMG00000002735	CYB5R1 (ENSPSMG00000002728)	ADIPOR1 (ENSPSMG00000002706)	KLHL12 (ENSPSMG00000002688)	RABIF (ENSPSMG00000002671)	ENSPSMG00000002640	ENSPSMG00000002617	KDM5B (ENSPSMG00000001734)	SYT2 (ENSPSMG00000001254)	PPP1R12B (ENSPSMG00000000990)	UBE2T (ENSPSMG00000000711)	LGR6 (ENSPSMG00000000695)	PTPN7 (ENSPSMG00000000679)
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	19	REN (ENSMICG00000007875)	ETNK2 (ENSMICG00000007869)	SOX13 (ENSMICG00000009236)	SNRPE (ENSMICG00000015537)	ENSMICG00000015519 ##36	LAX1 (ENSMICG00000029490)	ATP2B4 (ENSMICG00000015476)	OPTC (ENSMICG00000015466)	PRELP (ENSMICG00000029382)	FMOD (ENSMICG00000015453)	BTG2 (ENSMICG00000042717)	CHIT1 (ENSMICG00000002312)	CHI3L1 (ENSMICG00000015438)	MYBPH (ENSMICG00000015423)	ADORA1 (ENSMICG00000015418)	ENSMICG00000026339 ##22	ENSMICG00000033097 ##22	PPFIA4 (ENSMICG00000005134) ##25	TMEM183A (ENSMICG00000037686)	ENSMICG00000045794	ENSMICG00000026876	CYB5R1 (ENSMICG00000034721)	ENSMICG00000046405	ENSMICG00000035663	KLHL12 (ENSMICG00000007928)	RABIF (ENSMICG00000007924)	ENSMICG00000035712	ENSMICG00000035809	KDM5B (ENSMICG00000006046)	SYT2 (ENSMICG00000015559)	ENSMICG00000047360
Mouse lemur	MODERN SPECIES	19	ETNK2 (ENSMICG00000007869)	SOX13 (ENSMICG00000009236)	SNRPE (ENSMICG00000015537)	ENSMICG00000015519 ##36	LAX1 (ENSMICG00000029490)	ATP2B4 (ENSMICG00000015476)	OPTC (ENSMICG00000015466)	PRELP (ENSMICG00000029382)	FMOD (ENSMICG00000015453)	BTG2 (ENSMICG00000042717)	CHIT1 (ENSMICG00000002312)	CHI3L1 (ENSMICG00000015438)	MYBPH (ENSMICG00000015423)	ADORA1 (ENSMICG00000015418)	ENSMICG00000026339 ##22	ENSMICG00000033097 ##22	PPFIA4 (ENSMICG00000005134) ##25	TMEM183A (ENSMICG00000037686)	ENSMICG00000045794	ENSMICG00000026876	CYB5R1 (ENSMICG00000034721)	ENSMICG00000046405	ENSMICG00000035663	KLHL12 (ENSMICG00000007928)	RABIF (ENSMICG00000007924)	ENSMICG00000035712	ENSMICG00000035809	KDM5B (ENSMICG00000006046)	SYT2 (ENSMICG00000015559)	ENSMICG00000047360	PPP1R12B (ENSMICG00000015543)
Haplorrhini	ANCESTRAL SPECIES	7	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000163962	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00910000146854	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365
Tarsier	MODERN SPECIES	4852		BIRC5 (ENSTSYG00000026744)	ENSTSYG00000026347	TK1 (ENSTSYG00000009450)	SYNGR2 (ENSTSYG00000032357)	C17orf99 (ENSTSYG00000027081)	TMC8 (ENSTSYG00000008476)	TMC6 (ENSTSYG00000030311)	TNRC6C (ENSTSYG00000005403)	FMOD (ENSTSYG00000002491)	BTG2 (ENSTSYG00000036798)	CHIT1 (ENSTSYG00000006195)	CHI3L1 (ENSTSYG00000005599)	MYBPH (ENSTSYG00000012174)	ADORA1 (ENSTSYG00000027513)	MYOG (ENSTSYG00000032390) ##22	PPFIA4 (ENSTSYG00000013208) ##25	TMEM183A (ENSTSYG00000026847)	CYB5R1 (ENSTSYG00000003161)	ADIPOR1 (ENSTSYG00000001491)	KLHL12 (ENSTSYG00000008937)	RABIF (ENSTSYG00000033169)
Simiiformes	ANCESTRAL SPECIES	8	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000163962	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00910000146854.b	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000156705.h
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a ##36	ENSGT00550000074817.e.b	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310.j.a	ENSGT00940000163241	ENSGT00940000163962	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000156705.h	ENSGT00940000157365
Hominoidea	ANCESTRAL SPECIES	7	ENSGT01010000222851	ENSGT00920000149095.a ##36	ENSGT00550000074817.e.b	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00390000018706.m.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310.j.a	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000156705.h	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979
Hominidae	ANCESTRAL SPECIES	6	ENSGT01010000222851	ENSGT00920000149095.a ##36	ENSGT00550000074817.e.b	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00390000018706.m.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310.j.a	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000156705.h	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00390000016972.a.a.b.b.b.a.a.b	ENSGT00920000149095.a.g ##36	ENSGT00550000074817.e.b	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00390000018706.m.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310.j.a	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000156705.h	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979	ENSGT00940000159657.d
Gorilla	MODERN SPECIES		ENSGGOG00000023830	ZC3H11A (ENSGGOG00000004438) ##36	LAX1 (ENSGGOG00000010494)	ENSGGOG00000037477	ENSGGOG00000010467	ENSGGOG00000037269	OPTC (ENSGGOG00000015966)	PRELP (ENSGGOG00000015960)	ENSGGOG00000038088	FMOD (ENSGGOG00000011874)	BTG2 (ENSGGOG00000001857)	CHIT1 (ENSGGOG00000011183)	CHI3L1 (ENSGGOG00000009912)	MYBPH (ENSGGOG00000009899)	ADORA1 (ENSGGOG00000009895)	MYOG (ENSGGOG00000002115) ##22	PPFIA4 (ENSGGOG00000013912) ##25	TMEM183A (ENSGGOG00000009834)	ENSGGOG00000039922	CYB5R1 (ENSGGOG00000005136)	ADIPOR1 (ENSGGOG00000005131)	KLHL12 (ENSGGOG00000009159)	RABIF (ENSGGOG00000003438)	ENSGGOG00000022374	ENSGGOG00000042860	ENSGGOG00000036303	ENSGGOG00000003073	SYT2 (ENSGGOG00000004495)	ENSGGOG00000036878	PPP1R12B (ENSGGOG00000004481)	ENSGGOG00000039199
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00390000016972.a.a.b.b.b.a.a.b	ENSGT00920000149095.a.g ##36	ENSGT00550000074817.e.b	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00390000018706.m.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310.j.a	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979	ENSGT00940000159657.d	ENSGT01100000263518.B.b.a
Pan	ANCESTRAL SPECIES		ENSGT00390000016972.a.a.b.b.b.a.a.b	ENSGT00920000149095.a.g ##36	ENSGT00550000074817.e.b	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00390000018706.m.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310.j.a	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00950000182891.a.a.b.a.b.a.r.a	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979	ENSGT00940000159657.d
Chimpanzee	MODERN SPECIES		SNRPE (ENSPTRG00000043604)	ENSPTRG00000041475	ENSPTRG00000048078	ZC3H11A (ENSPTRG00000001876) ##36	LAX1 (ENSPTRG00000001874)	ATP2B4 (ENSPTRG00000001873)	ENSPTRG00000044182	OPTC (ENSPTRG00000024044)	PRELP (ENSPTRG00000022635)	FMOD (ENSPTRG00000001872)	BTG2 (ENSPTRG00000001871)	CHIT1 (ENSPTRG00000001870)	CHI3L1 (ENSPTRG00000001869)	MYBPH (ENSPTRG00000001868)	ADORA1 (ENSPTRG00000001867)	MYOG (ENSPTRG00000001866) ##22	PPFIA4 (ENSPTRG00000050591) ##25	TMEM183A (ENSPTRG00000001864)	ENSPTRG00000044445	CYB5R1 (ENSPTRG00000001863)	ADIPOR1 (ENSPTRG00000001862)	KLHL12 (ENSPTRG00000001861)	RABIF (ENSPTRG00000001860)	KDM5B (ENSPTRG00000001856)	SYT2 (ENSPTRG00000001854)	ENSPTRG00000046188	PPP1R12B (ENSPTRG00000001851)	UBE2T (ENSPTRG00000001850)	LGR6 (ENSPTRG00000001849)	PTPN7 (ENSPTRG00000001848)	ARL8A (ENSPTRG00000001846)
Bonobo	MODERN SPECIES		ENSPPAG00000034231	ZC3H11A (ENSPPAG00000039060) ##36	ENSPPAG00000033955	ZBED6 (ENSPPAG00000026325)	LAX1 (ENSPPAG00000029666)	ATP2B4 (ENSPPAG00000041080)	ENSPPAG00000029364	OPTC (ENSPPAG00000042530)	PRELP (ENSPPAG00000031486)	FMOD (ENSPPAG00000005300)	BTG2 (ENSPPAG00000008433)	ENSPPAG00000040620	CHI3L1 (ENSPPAG00000033305)	MYBPH (ENSPPAG00000007115)	ADORA1 (ENSPPAG00000034092)	MYOG (ENSPPAG00000029832) ##22	PPFIA4 (ENSPPAG00000024271) ##25	TMEM183A (ENSPPAG00000025262)	ENSPPAG00000040754	CYB5R1 (ENSPPAG00000033586)	ADIPOR1 (ENSPPAG00000040124)	KLHL12 (ENSPPAG00000041960)	RABIF (ENSPPAG00000029057)	KDM5B (ENSPPAG00000041486)	SYT2 (ENSPPAG00000035374)	ENSPPAG00000018881	PPP1R12B (ENSPPAG00000002618)	UBE2T (ENSPPAG00000033691)	LGR6 (ENSPPAG00000029070)	ENSPPAG00000036195	ARL8A (ENSPPAG00000031562)
Human	MODERN SPECIES		SOX13 (ENSG00000143842)	SNRPE (ENSG00000182004)	ENSG00000288644	ZBED6 (ENSG00000257315)	ZC3H11A (ENSG00000058673) ##36	LAX1 (ENSG00000122188)	ATP2B4 (ENSG00000058668)	OPTC (ENSG00000188770)	PRELP (ENSG00000188783)	FMOD (ENSG00000122176)	BTG2 (ENSG00000159388)	CHIT1 (ENSG00000133063)	CHI3L1 (ENSG00000133048)	MYBPH (ENSG00000133055)	ADORA1 (ENSG00000163485)	MYOG (ENSG00000122180) ##22	PPFIA4 (ENSG00000143847) ##25	TMEM183A (ENSG00000163444)	CYB5R1 (ENSG00000159348)	ADIPOR1 (ENSG00000159346)	KLHL12 (ENSG00000117153)	RABIF (ENSG00000183155)	KDM5B (ENSG00000117139)	SYT2 (ENSG00000143858)	PPP1R12B (ENSG00000077157)	UBE2T (ENSG00000077152)	LGR6 (ENSG00000133067)	PTPN7 (ENSG00000143851)	ARL8A (ENSG00000143862)	GPR37L1 (ENSG00000170075)	ELF3 (ENSG00000163435)
Orangutan	MODERN SPECIES		REN (ENSPPYG00000000322)	ENSPPYG00000000323	SOX13 (ENSPPYG00000000324)	ENSPPYG00000034999	ENSPPYG00000000326	ZC3H11A (ENSPPYG00000000327) ##36	ATP2B4 (ENSPPYG00000000329)	OPTC (ENSPPYG00000000330)	PRELP (ENSPPYG00000034400)	FMOD (ENSPPYG00000000332)	BTG2 (ENSPPYG00000033009)	CHIT1 (ENSPPYG00000000334)	CHI3L1 (ENSPPYG00000000335)	MYBPH (ENSPPYG00000000336)	ADORA1 (ENSPPYG00000000337)	MYOG (ENSPPYG00000000338) ##22	PPFIA4 (ENSPPYG00000000339) ##25	TMEM183A (ENSPPYG00000000340)	ENSPPYG00000030585	CYB5R1 (ENSPPYG00000000341)	ADIPOR1 (ENSPPYG00000000342)	KLHL12 (ENSPPYG00000000343)	RABIF (ENSPPYG00000032834)	ENSPPYG00000000345	KDM5B (ENSPPYG00000000346)	SYT2 (ENSPPYG00000000347)	PPP1R12B (ENSPPYG00000000348)	UBE2T (ENSPPYG00000000349)	LGR6 (ENSPPYG00000000350)	ENSPPYG00000000351	ARL8A (ENSPPYG00000000352)
Gibbon	MODERN SPECIES	24	MTIF3 (ENSNLEG00000000343)	GTF3A (ENSNLEG00000000331)	RASL11A (ENSNLEG00000000329)	ENSNLEG00000000327	ENSNLEG00000000323	ATP2B4 (ENSNLEG00000018117)	ENSNLEG00000033057	OPTC (ENSNLEG00000018116)	PRELP (ENSNLEG00000018115)	FMOD (ENSNLEG00000018114)	BTG2 (ENSNLEG00000034785)	CHIT1 (ENSNLEG00000018112)	CHI3L1 (ENSNLEG00000018111)	MYBPH (ENSNLEG00000018110)	ADORA1 (ENSNLEG00000018109)	MYOG (ENSNLEG00000018108) ##22	PPFIA4 (ENSNLEG00000018107) ##25	TMEM183A (ENSNLEG00000018106)	ENSNLEG00000031326	CYB5R1 (ENSNLEG00000033971)	ADIPOR1 (ENSNLEG00000018104)	KLHL12 (ENSNLEG00000018103)	ENSNLEG00000035846	RABIF (ENSNLEG00000018102)	KDM5B (ENSNLEG00000018101)	SYT2 (ENSNLEG00000018100)	ENSNLEG00000018099	ENSNLEG00000018098	ENSNLEG00000018097	UBE2T (ENSNLEG00000018096)	LGR6 (ENSNLEG00000018095)
Cercopithecidae	ANCESTRAL SPECIES	20	ENSGT01010000222851	ENSGT00920000149095.a ##36	ENSGT00550000074817.e.b	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00950000182891.a.a.b.a.a.a.a	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310.j.a.a	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00910000148143	ENSGT00940000157067	ENSGT00940000156705.h
Cercopithecinae	ANCESTRAL SPECIES	18	ENSGT00390000012818.o.a.b	ENSGT00920000149095.a ##36	ENSGT00550000074817.e.b	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00950000182891.a.a.b.a.a.a.a	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310.j.a.a	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00910000148143	ENSGT00940000157067	ENSGT00940000156705.h
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00390000018706.m.b.b.l.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00950000182891.a.a.b.a.a.a.a.y.a	ENSGT00910000148170	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00910000147745	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310.j.a.a	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00940000157076	ENSGT00940000157586	ENSGT00910000148143	ENSGT00940000157067	ENSGT00940000156705.h	ENSGT00940000157365	ENSGT00940000159939
Macaca	ANCESTRAL SPECIES		ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00390000018706.m.b.b.l.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00950000182891.a.a.b.a.a.a.a.y.a	ENSGT00910000148170	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00910000147745	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310.j.a.a	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000156705.h	ENSGT00940000157365	ENSGT00940000159939
Macaca_a	ANCESTRAL SPECIES		ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000164709.a.b.b.b.a.b.c.a.b.b	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310.j.a.a	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00940000167556.b.b.a.b.a.a.a.b.b.b.a.a.a.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939
Rhesus	MODERN SPECIES		SOX13 (ENSMMUG00000008460)	SNRPE (ENSMMUG00000031372)	ZC3H11A (ENSMMUG00000010539) ##36	LAX1 (ENSMMUG00000054133)	ATP2B4 (ENSMMUG00000021116)	OPTC (ENSMMUG00000021640)	PRELP (ENSMMUG00000021641)	ENSMMUG00000052790	ENSMMUG00000050913	FMOD (ENSMMUG00000021642)	BTG2 (ENSMMUG00000053426)	CHIT1 (ENSMMUG00000008709)	CHI3L1 (ENSMMUG00000008711)	MYBPH (ENSMMUG00000064766)	ADORA1 (ENSMMUG00000008714)	MYOG (ENSMMUG00000043626) ##22	PPFIA4 (ENSMMUG00000000063) ##25	TMEM183A (ENSMMUG00000000801)	MGAT4F (ENSMMUG00000051850)	ENSMMUG00000052919	CYB5R1 (ENSMMUG00000054475)	ADIPOR1 (ENSMMUG00000007046)	KLHL12 (ENSMMUG00000017849)	RABIF (ENSMMUG00000053567)	ENSMMUG00000058670	ENSMMUG00000054699	KDM5B (ENSMMUG00000015233)	SYT2 (ENSMMUG00000004001)	PPP1R12B (ENSMMUG00000003998)	UBE2T (ENSMMUG00000013795)	LGR6 (ENSMMUG00000013790)
Crab-eating macaque	MODERN SPECIES		ENSMFAG00000039994	ENSMFAG00000003997 ##36	LAX1 (ENSMFAG00000046296)	ENSMFAG00000054151	ATP2B4 (ENSMFAG00000010073)	OPTC (ENSMFAG00000045413)	PRELP (ENSMFAG00000040633)	ENSMFAG00000061915	ENSMFAG00000049609	FMOD (ENSMFAG00000033719)	BTG2 (ENSMFAG00000025652)	CHIT1 (ENSMFAG00000045615)	CHI3L1 (ENSMFAG00000003587)	MYBPH (ENSMFAG00000038338)	ADORA1 (ENSMFAG00000035176)	MYOG (ENSMFAG00000043657) ##22	PPFIA4 (ENSMFAG00000000167) ##25	TMEM183A (ENSMFAG00000034100)	ENSMFAG00000058328	ENSMFAG00000059204	CYB5R1 (ENSMFAG00000000852)	ADIPOR1 (ENSMFAG00000007141)	KLHL12 (ENSMFAG00000031203)	RABIF (ENSMFAG00000037667)	ENSMFAG00000058159	ENSMFAG00000054088	KDM5B (ENSMFAG00000017880)	SYT2 (ENSMFAG00000042825)	PPP1R12B (ENSMFAG00000003726)	UBE2T (ENSMFAG00000042839)	LGR6 (ENSMFAG00000035892)
Pig-tailed macaque	MODERN SPECIES	113	ZBED6 (ENSMNEG00000019676)	LAX1 (ENSMNEG00000035734)	ENSMNEG00000038506	ATP2B4 (ENSMNEG00000028334)	OPTC (ENSMNEG00000007381)	PRELP (ENSMNEG00000036078)	ENSMNEG00000009223	ENSMNEG00000010740	FMOD (ENSMNEG00000037353)	BTG2 (ENSMNEG00000030702)	CHIT1 (ENSMNEG00000028068)	CHI3L1 (ENSMNEG00000041632)	ENSMNEG00000018834	MYBPH (ENSMNEG00000041712)	ADORA1 (ENSMNEG00000036904)	MYOG (ENSMNEG00000035895) ##22	PPFIA4 (ENSMNEG00000037213) ##25	ENSMNEG00000033971	ENSMNEG00000042017	CYB5R1 (ENSMNEG00000044097)	ENSMNEG00000028827	KLHL12 (ENSMNEG00000042480)	RABIF (ENSMNEG00000044527)	KDM5B (ENSMNEG00000034695)	SYT2 (ENSMNEG00000045180)	ENSMNEG00000041756	PPP1R12B (ENSMNEG00000035232)	UBE2T (ENSMNEG00000045358)	LGR6 (ENSMNEG00000031709)	PTPN7 (ENSMNEG00000036879)	ARL8A (ENSMNEG00000039827)
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00920000149095.a ##36	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00390000018706.m.b.b.l.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00950000182891.a.a.b.a.a.a.a.y.a	ENSGT00910000148170	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00910000147745	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310.j.a.a	ENSGT00940000163241	ENSGT00940000163962	ENSGT00940000162325.B	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00940000157076	ENSGT00940000157586	ENSGT00910000148143	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939
Olive baboon	MODERN SPECIES		ENSPANG00000012284	ENSPANG00000034978	ENSPANG00000011479 ##36	LAX1 (ENSPANG00000010606)	ATP2B4 (ENSPANG00000012283)	ENSPANG00000049902	OPTC (ENSPANG00000010634)	PRELP (ENSPANG00000007498)	ENSPANG00000050296	FMOD (ENSPANG00000007340)	BTG2 (ENSPANG00000050972)	CHIT1 (ENSPANG00000010633)	CHI3L1 (ENSPANG00000014786)	MYBPH (ENSPANG00000010605)	ADORA1 (ENSPANG00000011451)	MYOG (ENSPANG00000016865) ##22	PPFIA4 (ENSPANG00000012282) ##25	TMEM183A (ENSPANG00000007913)	ENSPANG00000049150	ENSPANG00000038057	ENSPANG00000043800	CYB5R1 (ENSPANG00000035066)	ADIPOR1 (ENSPANG00000014889)	KLHL12 (ENSPANG00000011197)	RABIF (ENSPANG00000032497)	KDM5B (ENSPANG00000014633)	SYT2 (ENSPANG00000019528)	PPP1R12B (ENSPANG00000007497)	UBE2T (ENSPANG00000007191)	LGR6 (ENSPANG00000016204)	PTPN7 (ENSPANG00000015835)
Cercopithecinae_d	ANCESTRAL SPECIES	46	ENSGT00920000149095.a ##36	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00390000018706.m.b.b.l.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00950000182891.a.a.b.a.a.a.a.y.a	ENSGT00910000148170	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00910000147745	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310.j.a.a	ENSGT00940000163241	ENSGT00940000162325.B	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00940000157076	ENSGT00940000157586	ENSGT00910000148143	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979
Sooty mangabey	MODERN SPECIES	106	ENSCATG00000041403	ENSCATG00000039923 ##36	LAX1 (ENSCATG00000035082)	ATP2B4 (ENSCATG00000044125)	ENSCATG00000041383	OPTC (ENSCATG00000041166)	PRELP (ENSCATG00000042683)	ENSCATG00000014892	ENSCATG00000015096	FMOD (ENSCATG00000023109)	BTG2 (ENSCATG00000045262)	CHIT1 (ENSCATG00000045197)	CHI3L1 (ENSCATG00000035771)	MYBPH (ENSCATG00000033851)	ADORA1 (ENSCATG00000045370)	MYOG (ENSCATG00000002399) ##22	PPFIA4 (ENSCATG00000044625) ##25	ENSCATG00000026146	ENSCATG00000045023	ENSCATG00000015187	CYB5R1 (ENSCATG00000024122)	ADIPOR1 (ENSCATG00000035491)	KLHL12 (ENSCATG00000031800)	RABIF (ENSCATG00000029847)	KDM5B (ENSCATG00000037165)	SYT2 (ENSCATG00000043827)	ENSCATG00000042832	ENSCATG00000042663	PPP1R12B (ENSCATG00000034778)	UBE2T (ENSCATG00000038737)	LGR6 (ENSCATG00000033660)
Drill	MODERN SPECIES	1046	ENSMLEG00000009417 ##36	ENSMLEG00000036916	LAX1 (ENSMLEG00000024411)	ATP2B4 (ENSMLEG00000035583)	ENSMLEG00000032056	OPTC (ENSMLEG00000039265)	PRELP (ENSMLEG00000042419)	ENSMLEG00000027359	FMOD (ENSMLEG00000036882)	BTG2 (ENSMLEG00000043803)	CHIT1 (ENSMLEG00000031883)	CHI3L1 (ENSMLEG00000028044)	ENSMLEG00000024942	MYBPH (ENSMLEG00000042456)	ADORA1 (ENSMLEG00000042216)	MYOG (ENSMLEG00000035402) ##22	PPFIA4 (ENSMLEG00000042044) ##25	ENSMLEG00000043756	ENSMLEG00000009433	CYB5R1 (ENSMLEG00000036777)	ADIPOR1 (ENSMLEG00000040703)	ENSMLEG00000027243	KLHL12 (ENSMLEG00000023751)	RABIF (ENSMLEG00000011422)	KDM5B (ENSMLEG00000031522)	SYT2 (ENSMLEG00000028544)	ENSMLEG00000025577	PPP1R12B (ENSMLEG00000032639)	UBE2T (ENSMLEG00000002615)	LGR6 (ENSMLEG00000015139)	PTPN7 (ENSMLEG00000034416)
Vervet Monkey	MODERN SPECIES	17	ETNK2 (ENSCSAG00000014439)	SOX13 (ENSCSAG00000014423)	ENSCSAG00000000256	ENSCSAG00000014396 ##36	ZBED6 (ENSCSAG00000000255)	LAX1 (ENSCSAG00000014387)	ATP2B4 (ENSCSAG00000014379)	OPTC (ENSCSAG00000014362)	PRELP (ENSCSAG00000014352)	FMOD (ENSCSAG00000014347)	BTG2 (ENSCSAG00000014342)	CHIT1 (ENSCSAG00000014338)	CHI3L1 (ENSCSAG00000014333)	MYBPH (ENSCSAG00000014322)	ADORA1 (ENSCSAG00000014298)	MYOG (ENSCSAG00000014291) ##22	PPFIA4 (ENSCSAG00000014279) ##25	TMEM183A (ENSCSAG00000014258)	CYB5R1 (ENSCSAG00000014235)	ADIPOR1 (ENSCSAG00000014228)	KLHL12 (ENSCSAG00000014223)	RABIF (ENSCSAG00000014218)	ENSCSAG00000014206	KDM5B (ENSCSAG00000014155)	SYT2 (ENSCSAG00000014146)	PPP1R12B (ENSCSAG00000014142)	UBE2T (ENSCSAG00000014134)	LGR6 (ENSCSAG00000014130)	PTPN7 (ENSCSAG00000014118)	ARL8A (ENSCSAG00000014093)	GPR37L1 (ENSCSAG00000014085)
Rhinopithecus	ANCESTRAL SPECIES	33					ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00950000182891.a.a.b.a.a.a.a	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310.j.a.a	ENSGT00940000163962	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199.lb	ENSGT00390000016889	ENSGT00390000011085	ENSGT00940000157021	ENSGT00940000153725.a.b.a	ENSGT00420000029858	ENSGT00420000029847	ENSGT00940000156370	ENSGT00390000018876	ENSGT00390000009456
Golden snub-nosed monkey	MODERN SPECIES	2113							OPTC (ENSRROG00000037583)	PRELP (ENSRROG00000039664)	ENSRROG00000028516	FMOD (ENSRROG00000034712)	BTG2 (ENSRROG00000003449)	CHIT1 (ENSRROG00000040966)	CHI3L1 (ENSRROG00000033624)	MYBPH (ENSRROG00000024239)	ADORA1 (ENSRROG00000028863)	MYOG (ENSRROG00000036484) ##22	PPFIA4 (ENSRROG00000027572) ##25	ENSRROG00000040099	CYB5R1 (ENSRROG00000035635)	ADIPOR1 (ENSRROG00000032492)	KLHL12 (ENSRROG00000044766)	RABIF (ENSRROG00000039337)	ENSRROG00000039431	KDM5B (ENSRROG00000032595)	ENSRROG00000028600	SYT2 (ENSRROG00000038910)	PPP1R12B (ENSRROG00000039475)	ENSRROG00000006486	ENSRROG00000038880	UBE2T (ENSRROG00000037253)	LGR6 (ENSRROG00000035260)
Black snub-nosed monkey	MODERN SPECIES	1534				LAX1 (ENSRBIG00000032142)	ENSRBIG00000041287	ATP2B4 (ENSRBIG00000031557)	OPTC (ENSRBIG00000040833)	PRELP (ENSRBIG00000044151)	ENSRBIG00000023962	FMOD (ENSRBIG00000040401)	BTG2 (ENSRBIG00000034514)	CHIT1 (ENSRBIG00000038487)	CHI3L1 (ENSRBIG00000043375)	MYBPH (ENSRBIG00000027837)	ADORA1 (ENSRBIG00000021993)	MYOG (ENSRBIG00000040040) ##22	PPFIA4 (ENSRBIG00000040459) ##25	ENSRBIG00000012596	TNIK (ENSRBIG00000043278)	ENSRBIG00000009658	ENSRBIG00000026426	EIF5A2 (ENSRBIG00000044911)	ENSRBIG00000031400	ENSRBIG00000036103
Platyrrhini	ANCESTRAL SPECIES	24	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a.e ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00910000146854.b	ENSGT00390000016889	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000156705.h	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979
Cebidae	ANCESTRAL SPECIES	23	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT01010000222851	ENSGT00920000149095.a.e ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00910000146854.b	ENSGT00390000016889	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000156705.h	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979
Marmoset	MODERN SPECIES	10	ETNK2 (ENSCJAG00000016828)	SOX13 (ENSCJAG00000016794)	SNRPE (ENSCJAG00000046841)	ENSCJAG00000006671 ##36	LAX1 (ENSCJAG00000006659)	ATP2B4 (ENSCJAG00000006561)	ENSCJAG00000080830	OPTC (ENSCJAG00000006558)	PRELP (ENSCJAG00000006543)	FMOD (ENSCJAG00000006520)	BTG2 (ENSCJAG00000006514)	CHI3L1 (ENSCJAG00000006483)	MYBPH (ENSCJAG00000006451)	ADORA1 (ENSCJAG00000079551)	ENSCJAG00000084402	MYOG (ENSCJAG00000006443) ##22	PPFIA4 (ENSCJAG00000006353) ##25	ENSCJAG00000006297	ENSCJAG00000071661	CYB5R1 (ENSCJAG00000079557)	ADIPOR1 (ENSCJAG00000006268)	KLHL12 (ENSCJAG00000006231)	RABIF (ENSCJAG00000068955)	KDM5B (ENSCJAG00000006050)	SYT2 (ENSCJAG00000079960)	PPP1R12B (ENSCJAG00000005949)	UBE2T (ENSCJAG00000005917)	ENSCJAG00000074832	LGR6 (ENSCJAG00000005906)	PTPN7 (ENSCJAG00000005882)	ARL8A (ENSCJAG00000005865)
Cebidae_a	ANCESTRAL SPECIES	11	ENSGT00390000012818.o.a.a.a.b	ENSGT00390000012818.o.b	ENSGT01010000222851.a	ENSGT00920000149095.a.e ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00910000146854.b	ENSGT00390000016889	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000156705.h	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979	ENSGT00940000159657.d
Capuchin	MODERN SPECIES	38	SOX13 (ENSCCAG00000030362)	SNRPE (ENSCCAG00000020762)	ENSCCAG00000036323	ENSCCAG00000023466 ##36	ZBED6 (ENSCCAG00000019665)	LAX1 (ENSCCAG00000000404)	ATP2B4 (ENSCCAG00000027026)	OPTC (ENSCCAG00000033174)	PRELP (ENSCCAG00000025891)	FMOD (ENSCCAG00000024613)	BTG2 (ENSCCAG00000021623)	CHIT1 (ENSCCAG00000031129)	CHI3L1 (ENSCCAG00000028232)	MYBPH (ENSCCAG00000026738)	ADORA1 (ENSCCAG00000030903)	MYOG (ENSCCAG00000036804) ##22	PPFIA4 (ENSCCAG00000023090) ##25	TMEM183A (ENSCCAG00000036374)	CYB5R1 (ENSCCAG00000036166)	ADIPOR1 (ENSCCAG00000023574)	KLHL12 (ENSCCAG00000034014)	ENSCCAG00000029325	RABIF (ENSCCAG00000030538)	KDM5B (ENSCCAG00000029643)	SYT2 (ENSCCAG00000028329)	ENSCCAG00000003344	PPP1R12B (ENSCCAG00000021815)
Bolivian squirrel monkey	MODERN SPECIES	141	SOX13 (ENSSBOG00000025192)	ENSSBOG00000022782	ENSSBOG00000034982	ENSSBOG00000033376	ENSSBOG00000034158 ##36	LAX1 (ENSSBOG00000028944)	ATP2B4 (ENSSBOG00000022856)	OPTC (ENSSBOG00000022832)	PRELP (ENSSBOG00000033985)	FMOD (ENSSBOG00000026354)	BTG2 (ENSSBOG00000019017)	CHIT1 (ENSSBOG00000001992)	CHI3L1 (ENSSBOG00000034150)	MYBPH (ENSSBOG00000021367)	ADORA1 (ENSSBOG00000012577)	MYOG (ENSSBOG00000015922) ##22	PPFIA4 (ENSSBOG00000028434) ##25	TMEM183A (ENSSBOG00000023290)	CYB5R1 (ENSSBOG00000026378)	ENSSBOG00000032665	ENSSBOG00000023668	KLHL12 (ENSSBOG00000028550)	RABIF (ENSSBOG00000035749)	ENSSBOG00000024464	KDM5B (ENSSBOG00000034252)	SYT2 (ENSSBOG00000018741)	ENSSBOG00000033416	PPP1R12B (ENSSBOG00000032116)	UBE2T (ENSSBOG00000016303)	LGR6 (ENSSBOG00000031017)	PTPN7 (ENSSBOG00000006743)
Mas night monkey	MODERN SPECIES	958	SOX13 (ENSANAG00000036193)	SNRPE (ENSANAG00000036379)	ENSANAG00000033622	ENSANAG00000034973 ##36	ZBED6 (ENSANAG00000017840)	LAX1 (ENSANAG00000034140)	ATP2B4 (ENSANAG00000033579)	OPTC (ENSANAG00000037909)	PRELP (ENSANAG00000034042)	FMOD (ENSANAG00000033755)	BTG2 (ENSANAG00000037468)	CHIT1 (ENSANAG00000035638)	CHI3L1 (ENSANAG00000032956)	MYBPH (ENSANAG00000036752)	ADORA1 (ENSANAG00000037584)	MYOG (ENSANAG00000026197) ##22	PPFIA4 (ENSANAG00000024014) ##25	TMEM183A (ENSANAG00000032324)	ENSANAG00000025915	CYB5R1 (ENSANAG00000020782)	ADIPOR1 (ENSANAG00000032987)	ENSANAG00000033364	KLHL12 (ENSANAG00000033948)	RABIF (ENSANAG00000031550)	KDM5B (ENSANAG00000032374)	ENSANAG00000018584	SYT2 (ENSANAG00000029864)	ENSANAG00000026836	PPP1R12B (ENSANAG00000035134)	UBE2T (ENSANAG00000027019)	LGR6 (ENSANAG00000033706)
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939
Tree shrew	MODERN SPECIES	4420																MYOG (ENSTBEG00000017364) ##22	PPFIA4 (ENSTBEG00000016660) ##25	TMEM183A (ENSTBEG00000016573)	ENSTBEG00000016185	CYB5R1 (ENSTBEG00000015477)	ADIPOR1 (ENSTBEG00000015149)	KLHL12 (ENSTBEG00000014866)	RABIF (ENSTBEG00000014840)
Glires	ANCESTRAL SPECIES		ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939
Lagomorpha	ANCESTRAL SPECIES	15	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000183165.b.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979	ENSGT00940000159657.d
Pika	MODERN SPECIES	1852								ENSOPRG00000014839	PRELP (ENSOPRG00000014833)	FMOD (ENSOPRG00000014829)	ENSOPRG00000014825	CHIT1 (ENSOPRG00000014800)	CHI3L1 (ENSOPRG00000014788)	ENSOPRG00000014780	ADORA1 (ENSOPRG00000014766)	MYOG (ENSOPRG00000014753) ##22	ENSOPRG00000014707 ##25
Rabbit	MODERN SPECIES	7	ENSOCUG00000032632	ENSOCUG00000000251 ##36	ZBED6 (ENSOCUG00000024739)	ENSOCUG00000003715	ENSOCUG00000006539	OPTC (ENSOCUG00000006753)	PRELP (ENSOCUG00000009707)	FMOD (ENSOCUG00000009702)	BTG2 (ENSOCUG00000004422)	ENSOCUG00000027402	CHIT1 (ENSOCUG00000011027)	CHI3L1 (ENSOCUG00000026988)	MYBPH (ENSOCUG00000011021)	ADORA1 (ENSOCUG00000011017)	PPFIA4 (ENSOCUG00000027672) ##25	MYOG (ENSOCUG00000011548) ##22	TMEM183A (ENSOCUG00000006191)	ENSOCUG00000016812	CYB5R1 (ENSOCUG00000016799)	KLHL12 (ENSOCUG00000009219)	RABIF (ENSOCUG00000002207)	ENSOCUG00000022112	ENSOCUG00000008022	KDM5B (ENSOCUG00000008003)	ENSOCUG00000030485	SYT2 (ENSOCUG00000022514)	PPP1R12B (ENSOCUG00000003236)	UBE2T (ENSOCUG00000010249)	LGR6 (ENSOCUG00000010236)	ENSOCUG00000039667	ENSOCUG00000008258
Rodentia	ANCESTRAL SPECIES		ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939
Rodentia_B	ANCESTRAL SPECIES		ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Kangaroo rat	MODERN SPECIES	354	Etnk2 (ENSDORG00000003410)	Sox13 (ENSDORG00000003409)	ENSDORG00000023819	ENSDORG00000003463 ##36	Zbed6 (ENSDORG00000025233)	ENSDORG00000014621	Atp2b4 (ENSDORG00000014618)	Optc (ENSDORG00000003489)	Prelp (ENSDORG00000003488)	Fmod (ENSDORG00000029378)	Btg2 (ENSDORG00000025474)	Chit1 (ENSDORG00000010764)	Chil1 (ENSDORG00000002127)	Mybph (ENSDORG00000002129)	Adora1 (ENSDORG00000027122)	Myog (ENSDORG00000029186) ##22	Ppfia4 (ENSDORG00000016503) ##25	Tmem183a (ENSDORG00000016500)	ENSDORG00000025988	Cyb5r1 (ENSDORG00000007313)	Adipor1 (ENSDORG00000006876)	ENSDORG00000008042	Klhl12 (ENSDORG00000004282)	Rabif (ENSDORG00000000851)	Kdm5b (ENSDORG00000003088)	Syt2 (ENSDORG00000002073)	ENSDORG00000025873	ENSDORG00000025294	Ube2t (ENSDORG00000027388)	Lgr6 (ENSDORG00000005413)	Ptpn7 (ENSDORG00000010483)
Myomorpha	ANCESTRAL SPECIES	16	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Muroidea	ANCESTRAL SPECIES	9	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Muroidea_A	ANCESTRAL SPECIES	12	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Cricetidae	ANCESTRAL SPECIES	13	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979	ENSGT00940000159657.d
Golden Hamster	MODERN SPECIES	656	Kiss1 (ENSMAUG00000013440)	Ren1 (ENSMAUG00000019491)	Etnk2 (ENSMAUG00000001010)	Sox13 (ENSMAUG00000001464)	ENSMAUG00000014663 ##36	Lax1 (ENSMAUG00000013607)	Atp2b4 (ENSMAUG00000007564)	Optc (ENSMAUG00000020983)	Prelp (ENSMAUG00000020098)	Fmod (ENSMAUG00000011458)	Btg2 (ENSMAUG00000016930)	Chit1 (ENSMAUG00000009963)	Chil1 (ENSMAUG00000014596)	Mybph (ENSMAUG00000020580)	Adora1 (ENSMAUG00000018351)	Myog (ENSMAUG00000019653) ##22	Ppfia4 (ENSMAUG00000005666) ##25	Tmem183a (ENSMAUG00000015202)	Mgat4f (ENSMAUG00000000514)	Cyb5r1 (ENSMAUG00000015345)	Adipor1 (ENSMAUG00000003973)	Klhl12 (ENSMAUG00000020212)	Rabif (ENSMAUG00000019661)	Kdm5b (ENSMAUG00000006764)	ENSMAUG00000012598	Syt2 (ENSMAUG00000013331)	ENSMAUG00000015464	ENSMAUG00000020239	Ube2t (ENSMAUG00000000629)	Lgr6 (ENSMAUG00000004284)	Ptpn7 (ENSMAUG00000019129)
Chinese hamster chok1gshd	MODERN SPECIES	2	Etnk2 (ENSCGRG00001019568)	Sox13 (ENSCGRG00001024218)	Snrpe (ENSCGRG00001019074)	Zc3h11a (ENSCGRG00001014561) ##36	Zbed6 (ENSCGRG00001003149)	Lax1 (ENSCGRG00001019553)	Atp2b4 (ENSCGRG00001011759)	Optc (ENSCGRG00001022912)	Prelp (ENSCGRG00001015698)	Fmod (ENSCGRG00001015148)	Btg2 (ENSCGRG00001018732)	Chit1 (ENSCGRG00001007003)	Chil1 (ENSCGRG00001022520)	Mybph (ENSCGRG00001015181)	Adora1 (ENSCGRG00001000698)	Myog (ENSCGRG00001024598) ##22	Ppfia4 (ENSCGRG00001024386) ##25	Tmem183a (ENSCGRG00001008850)	Mgat4f (ENSCGRG00001004313)	Cyb5r1 (ENSCGRG00001024525)	Adipor1 (ENSCGRG00001024118)	Klhl12 (ENSCGRG00001007862)	Rabif (ENSCGRG00001004862)	Kdm5b (ENSCGRG00001023924)	Syt2 (ENSCGRG00001014761)	Ppp1r12b (ENSCGRG00001018937)	Ube2t (ENSCGRG00001005822)	Lgr6 (ENSCGRG00001023986)	Ptprv (ENSCGRG00001005400)	Ptpn7 (ENSCGRG00001022550)	Arl8a (ENSCGRG00001020777)
Cricetidae_B	ANCESTRAL SPECIES	8	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Prairie vole	MODERN SPECIES	14	Ren1 (ENSMOCG00000012713)	Etnk2 (ENSMOCG00000016784)	Sox13 (ENSMOCG00000004872)	Snrpe (ENSMOCG00000019341)	ENSMOCG00000018144 ##36	Zbed6 (ENSMOCG00000001415)	Lax1 (ENSMOCG00000019077)	Atp2b4 (ENSMOCG00000001360)	Optc (ENSMOCG00000002786)	Prelp (ENSMOCG00000012807)	Fmod (ENSMOCG00000015819)	Btg2 (ENSMOCG00000017852)	Chil1 (ENSMOCG00000000618)	Mybph (ENSMOCG00000016369)	Adora1 (ENSMOCG00000017725)	Myog (ENSMOCG00000021956) ##22	Ppfia4 (ENSMOCG00000023033) ##25	Tmem183a (ENSMOCG00000001009)	Mgat4f (ENSMOCG00000006511)	Cyb5r1 (ENSMOCG00000011285)	Adipor1 (ENSMOCG00000011542)	Klhl12 (ENSMOCG00000018343)	Rabif (ENSMOCG00000007673)	Mgat4e (ENSMOCG00000012186)	Kdm5b (ENSMOCG00000014263)	Syt2 (ENSMOCG00000018862)	ENSMOCG00000008655	ENSMOCG00000017473	Ube2t (ENSMOCG00000021471)	Lgr6 (ENSMOCG00000001284)	Ptprv (ENSMOCG00000016711)
Northern American deer mouse	MODERN SPECIES	2	Etnk2 (ENSPEMG00000001456)	Sox13 (ENSPEMG00000011632)	Snrpe (ENSPEMG00000008031)	ENSPEMG00000007494 ##36	Zbed6 (ENSPEMG00000025595)	Lax1 (ENSPEMG00000025679)	Atp2b4 (ENSPEMG00000015469)	Optc (ENSPEMG00000001092)	Prelp (ENSPEMG00000011488)	Fmod (ENSPEMG00000014900)	Btg2 (ENSPEMG00000026893)	Chit1 (ENSPEMG00000001900)	Chil1 (ENSPEMG00000010614)	Mybph (ENSPEMG00000018187)	Adora1 (ENSPEMG00000031414)	Myog (ENSPEMG00000006258) ##22	Ppfia4 (ENSPEMG00000008757) ##25	Tmem183a (ENSPEMG00000011541)	Mgat4f (ENSPEMG00000017545)	Cyb5r1 (ENSPEMG00000016852)	Adipor1 (ENSPEMG00000008869)	Klhl12 (ENSPEMG00000017400)	Rabif (ENSPEMG00000027280)	ENSPEMG00000030133	Kdm5b (ENSPEMG00000019245)	Syt2 (ENSPEMG00000029473)	Ppp1r12b (ENSPEMG00000025138)	Ube2t (ENSPEMG00000017855)	Lgr6 (ENSPEMG00000010971)	Ptprv (ENSPEMG00000010006)	Ptpn7 (ENSPEMG00000017641)
Murinae	ANCESTRAL SPECIES	11	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Mus	ANCESTRAL SPECIES	5	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Mus_A	ANCESTRAL SPECIES	5	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Ryukyu mouse	MODERN SPECIES		Sox13 (MGP_CAROLIEiJ_G0014602)	Snrpe (MGP_CAROLIEiJ_G0014603)	Zc3h11a (MGP_CAROLIEiJ_G0014604) ##36	MGP_CAROLIEiJ_G0014605	MGP_CAROLIEiJ_G0014606	Lax1 (MGP_CAROLIEiJ_G0014607)	Atp2b4 (MGP_CAROLIEiJ_G0014608)	Optc (MGP_CAROLIEiJ_G0014609)	Prelp (MGP_CAROLIEiJ_G0014610)	Fmod (MGP_CAROLIEiJ_G0014611)	Btg2 (MGP_CAROLIEiJ_G0014612)	Chit1 (MGP_CAROLIEiJ_G0014613)	Chil1 (MGP_CAROLIEiJ_G0014614)	Mybph (MGP_CAROLIEiJ_G0014615)	Adora1 (MGP_CAROLIEiJ_G0014616)	Myog (MGP_CAROLIEiJ_G0014617) ##22	Ppfia4 (MGP_CAROLIEiJ_G0014618) ##25	Tmem183a (MGP_CAROLIEiJ_G0014619)	Mgat4f (MGP_CAROLIEiJ_G0014620)	Cyb5r1 (MGP_CAROLIEiJ_G0014621)	MGP_CAROLIEiJ_G0014622	Klhl12 (MGP_CAROLIEiJ_G0014623)	Rabif (MGP_CAROLIEiJ_G0014624)	MGP_CAROLIEiJ_G0014625	Kdm5b (MGP_CAROLIEiJ_G0014626)	Syt2 (MGP_CAROLIEiJ_G0014627)	Ppp1r12b (MGP_CAROLIEiJ_G0014628)	Ube2t (MGP_CAROLIEiJ_G0014629)	Lgr6 (MGP_CAROLIEiJ_G0014630)	Ptpn7 (MGP_CAROLIEiJ_G0014631)	Arl8a (MGP_CAROLIEiJ_G0014632)
Mus_B	ANCESTRAL SPECIES	7	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Mus_C	ANCESTRAL SPECIES	1	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Steppe mouse	MODERN SPECIES	3299	Sox13 (ENSMSIG00000018829)	Snrpe (ENSMSIG00000018783)	Zc3h11a (ENSMSIG00000018739) ##36	Zbed6 (ENSMSIG00000018721)	Lax1 (ENSMSIG00000018697)	Atp2b4 (ENSMSIG00000018529)	Optc (ENSMSIG00000018410)	Prelp (ENSMSIG00000018392)	Fmod (ENSMSIG00000018385)	Btg2 (ENSMSIG00000018371)	ENSMSIG00000018348	Chit1 (ENSMSIG00000018191)	Chil1 (ENSMSIG00000018094)	Mybph (ENSMSIG00000018048)	Adora1 (ENSMSIG00000018036)	Myog (ENSMSIG00000018017) ##22	Ppfia4 (ENSMSIG00000017850) ##25	Mgat4f (ENSMSIG00000017814)	ENSMSIG00000017789	Cyb5r1 (ENSMSIG00000017771)	Adipor1 (ENSMSIG00000017739)	Klhl12 (ENSMSIG00000017676)	Mgat4e (ENSMSIG00000017668)	Kdm5b (ENSMSIG00000017529)	Syt2 (ENSMSIG00000017466)	Ppp1r12b (ENSMSIG00000017245)	ENSMSIG00000017237	Ube2t (ENSMSIG00000017228)	Lgr6 (ENSMSIG00000017146)	ENSMSIG00000017139	Ptprv (ENSMSIG00000017000)
spretus	MODERN SPECIES		Sox13 (MGP_SPRETEiJ_G0015409)	Snrpe (MGP_SPRETEiJ_G0015410)	Zc3h11a (MGP_SPRETEiJ_G0015411) ##36	MGP_SPRETEiJ_G0015412	MGP_SPRETEiJ_G0015413	Lax1 (MGP_SPRETEiJ_G0015414)	Atp2b4 (MGP_SPRETEiJ_G0015415)	MGP_SPRETEiJ_G0015416	Prelp (MGP_SPRETEiJ_G0015417)	Fmod (MGP_SPRETEiJ_G0015418)	Btg2 (MGP_SPRETEiJ_G0015419)	Chit1 (MGP_SPRETEiJ_G0015420)	Chil1 (MGP_SPRETEiJ_G0015421)	Mybph (MGP_SPRETEiJ_G0015422)	Adora1 (MGP_SPRETEiJ_G0015423)	Myog (MGP_SPRETEiJ_G0015424) ##22	Ppfia4 (MGP_SPRETEiJ_G0015425) ##25	Tmem183a (MGP_SPRETEiJ_G0015426)	Mgat4f (MGP_SPRETEiJ_G0015427)	Cyb5r1 (MGP_SPRETEiJ_G0015428)	Adipor1 (MGP_SPRETEiJ_G0015429)	Klhl12 (MGP_SPRETEiJ_G0015430)	Rabif (MGP_SPRETEiJ_G0015431)	Mgat4e (MGP_SPRETEiJ_G0015432)	Kdm5b (MGP_SPRETEiJ_G0015433)	Ppp1r12b (MGP_SPRETEiJ_G0015435)	Ube2t (MGP_SPRETEiJ_G0015436)	Lgr6 (MGP_SPRETEiJ_G0015437)	Ptpn7 (MGP_SPRETEiJ_G0015438)	Arl8a (MGP_SPRETEiJ_G0015439)	Gpr37l1 (MGP_SPRETEiJ_G0015440)
Mouse	MODERN SPECIES		Etnk2 (ENSMUSG00000070644)	Sox13 (ENSMUSG00000070643)	Snrpe (ENSMUSG00000090553)	Zc3h11a (ENSMUSG00000102976) ##36	Zbed6 (ENSMUSG00000094410)	Lax1 (ENSMUSG00000051998)	Atp2b4 (ENSMUSG00000026463)	Optc (ENSMUSG00000010311)	Prelp (ENSMUSG00000041577)	Fmod (ENSMUSG00000041559)	Btg2 (ENSMUSG00000020423)	Chit1 (ENSMUSG00000026450)	Chil1 (ENSMUSG00000064246)	Mybph (ENSMUSG00000042451)	Adora1 (ENSMUSG00000042429)	Myog (ENSMUSG00000026459) ##22	Ppfia4 (ENSMUSG00000026458) ##25	Tmem183a (ENSMUSG00000042305)	Mgat4f (ENSMUSG00000050526)	Cyb5r1 (ENSMUSG00000026456)	Adipor1 (ENSMUSG00000026457)	Klhl12 (ENSMUSG00000026455)	Rabif (ENSMUSG00000042229)	Mgat4e (ENSMUSG00000046367)	Kdm5b (ENSMUSG00000042207)	Syt2 (ENSMUSG00000026452)	Ppp1r12b (ENSMUSG00000073557)	Ube2t (ENSMUSG00000026429)	Lgr6 (ENSMUSG00000042793)	Ptprv (ENSMUSG00000097993)	Ptpn7 (ENSMUSG00000031506)
Shrew mouse	MODERN SPECIES	18	Sox13 (MGP_PahariEiJ_G0027838)	Snrpe (MGP_PahariEiJ_G0027839)	Zc3h11a (MGP_PahariEiJ_G0027840) ##36	MGP_PahariEiJ_G0027841	MGP_PahariEiJ_G0027842	Lax1 (MGP_PahariEiJ_G0027843)	MGP_PahariEiJ_G0027844	Optc (MGP_PahariEiJ_G0027845)	Prelp (MGP_PahariEiJ_G0027846)	Fmod (MGP_PahariEiJ_G0027847)	Btg2 (MGP_PahariEiJ_G0027848)	Chit1 (MGP_PahariEiJ_G0027849)	Chil1 (MGP_PahariEiJ_G0027850)	Mybph (MGP_PahariEiJ_G0027851)	Adora1 (MGP_PahariEiJ_G0027852)	Myog (MGP_PahariEiJ_G0027853) ##22	Ppfia4 (MGP_PahariEiJ_G0027854) ##25	Tmem183a (MGP_PahariEiJ_G0027855)	Mgat4f (MGP_PahariEiJ_G0027856)	Cyb5r1 (MGP_PahariEiJ_G0027857)	Adipor1 (MGP_PahariEiJ_G0027858)	Klhl12 (MGP_PahariEiJ_G0027859)	Rabif (MGP_PahariEiJ_G0027860)	Mgat4e (MGP_PahariEiJ_G0027861)	Kdm5b (MGP_PahariEiJ_G0027862)	Syt2 (MGP_PahariEiJ_G0027863)	Ppp1r12b (MGP_PahariEiJ_G0027864)	Ube2t (MGP_PahariEiJ_G0027865)	Lgr6 (MGP_PahariEiJ_G0027866)	Ptpn7 (MGP_PahariEiJ_G0027867)	Arl8a (MGP_PahariEiJ_G0027868)
Rat	MODERN SPECIES	4	Etnk2 (ENSRNOG00000028368)	Sox13 (ENSRNOG00000028353)	LOC498231 (ENSRNOG00000029418)	Snrpe (ENSRNOG00000067587)	Zbed6 (ENSRNOG00000053210)	Lax1 (ENSRNOG00000028250)	Atp2b4 (ENSRNOG00000003031)	Optc (ENSRNOG00000003059)	Prelp (ENSRNOG00000003120)	Fmod (ENSRNOG00000003183)	Btg2 (ENSRNOG00000003300)	Chit1 (ENSRNOG00000028072)	Chi3l1 (ENSRNOG00000053272)	Mybph (ENSRNOG00000003336)	Adora1 (ENSRNOG00000003442)	Myog (ENSRNOG00000030743) ##22	Ppfia4 (ENSRNOG00000003494) ##25	Tmem183a (ENSRNOG00000003594)	Mgat4e-like (ENSRNOG00000027702)	Cyb5r1 (ENSRNOG00000003973)	Adipor1 (ENSRNOG00000004143)	Klhl12 (ENSRNOG00000004193)	Ndufv3-ps1 (ENSRNOG00000027593)	Rabif (ENSRNOG00000004424)	Mgat4e (ENSRNOG00000039568)	Kdm5b (ENSRNOG00000060544)	Syt2 (ENSRNOG00000004756)	Ppp1r12b (ENSRNOG00000051440)	ENSRNOG00000068257	Ube2t (ENSRNOG00000005038)	Lgr6 (ENSRNOG00000005093)
Upper Galilee mountains blind mole rat	MODERN SPECIES	699	Ren1 (ENSNGAG00000022621)	Etnk2 (ENSNGAG00000022245)	Sox13 (ENSNGAG00000010564)	Snrpe (ENSNGAG00000021588)	ENSNGAG00000001706 ##36	Zbed6 (ENSNGAG00000014592)	Lax1 (ENSNGAG00000021147)	Atp2b4 (ENSNGAG00000005391)	Prelp (ENSNGAG00000014170)	Fmod (ENSNGAG00000013706)	Btg2 (ENSNGAG00000022776)	Chit1 (ENSNGAG00000021293)	Chil1 (ENSNGAG00000023060)	Mybph (ENSNGAG00000014067)	Adora1 (ENSNGAG00000023414)	Myog (ENSNGAG00000010861) ##22	Ppfia4 (ENSNGAG00000024254) ##25	ENSNGAG00000023538	Tmem183a (ENSNGAG00000023196)	Cyb5r1 (ENSNGAG00000012253)	Adipor1 (ENSNGAG00000022932)	ENSNGAG00000021565	Rabif (ENSNGAG00000018113)	ENSNGAG00000024192	ENSNGAG00000024084	Kdm5b (ENSNGAG00000011849)	Syt2 (ENSNGAG00000024246)	ENSNGAG00000019794	ENSNGAG00000024117	Ube2t (ENSNGAG00000024162)	Lgr6 (ENSNGAG00000006200)
Lesser Egyptian jerboa	MODERN SPECIES	193	Ccl22 (ENSJJAG00000009625)	ENSJJAG00000008973	Ccl17 (ENSJJAG00000007905)	Ciapin1 (ENSJJAG00000007168)	Coq9 (ENSJJAG00000023282)	Polr2c (ENSJJAG00000023057)	Dok4 (ENSJJAG00000022664)	Atp2b4 (ENSJJAG00000021638)	Optc (ENSJJAG00000016594)	Prelp (ENSJJAG00000015790)	Fmod (ENSJJAG00000015609)	Btg2 (ENSJJAG00000014569)	Chil1 (ENSJJAG00000014064)	Mybph (ENSJJAG00000014452)	Adora1 (ENSJJAG00000013850)	Myog (ENSJJAG00000013746) ##22	Ppfia4 (ENSJJAG00000011900) ##25	ENSJJAG00000010576	ENSJJAG00000010495	Cyb5r1 (ENSJJAG00000008154)	ENSJJAG00000007092	Klhl12 (ENSJJAG00000021531)	Rabif (ENSJJAG00000020396)	Kdm5b (ENSJJAG00000011219)	Syt2 (ENSJJAG00000009871)	ENSJJAG00000000250	ENSJJAG00000000055	Lgr6 (ENSJJAG00000023003)	Ptpn7 (ENSJJAG00000020438)	Arl8a (ENSJJAG00000023105)	Gpr37l1 (ENSJJAG00000022800)
Rodentia_A	ANCESTRAL SPECIES		ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939
Sciuridae	ANCESTRAL SPECIES		ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079
Marmotini	ANCESTRAL SPECIES	60	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079
Marmotini_b	ANCESTRAL SPECIES	70	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000160979
Squirrel	MODERN SPECIES	167	ETNK2 (ENSSTOG00000015115)	SOX13 (ENSSTOG00000015089)	ENSSTOG00000031197	ENSSTOG00000000736 ##36	ZBED6 (ENSSTOG00000022677)	LAX1 (ENSSTOG00000022601)	ATP2B4 (ENSSTOG00000010657)	OPTC (ENSSTOG00000011562)	PRELP (ENSSTOG00000011558)	FMOD (ENSSTOG00000023921)	BTG2 (ENSSTOG00000024859)	CHIT1 (ENSSTOG00000015059)	CHI3L1 (ENSSTOG00000015436)	MYBPH (ENSSTOG00000005228)	ADORA1 (ENSSTOG00000021164)	MYOG (ENSSTOG00000028049) ##22	PPFIA4 (ENSSTOG00000020313) ##25	ENSSTOG00000012466	ENSSTOG00000028547	CYB5R1 (ENSSTOG00000021865)	ADIPOR1 (ENSSTOG00000015459)	KLHL12 (ENSSTOG00000015452)	RABIF (ENSSTOG00000015450)	ENSSTOG00000011106	ENSSTOG00000028169	KDM5B (ENSSTOG00000000372)	SYT2 (ENSSTOG00000010279)	PPP1R12B (ENSSTOG00000010248)	UBE2T (ENSSTOG00000010421)	LGR6 (ENSSTOG00000027585)	PTPN7 (ENSSTOG00000027740)
Arctic ground squirrel	MODERN SPECIES	181	REN (ENSUPAG00010007054)	ETNK2 (ENSUPAG00010007088)	SOX13 (ENSUPAG00010007097)	SNRPE (ENSUPAG00010007135)	ENSUPAG00010007210 ##36	LAX1 (ENSUPAG00010007396)	ATP2B4 (ENSUPAG00010007428)	OPTC (ENSUPAG00010007813)	PRELP (ENSUPAG00010007921)	FMOD (ENSUPAG00010007930)	BTG2 (ENSUPAG00010007940)	CHIT1 (ENSUPAG00010007952)	CHI3L1 (ENSUPAG00010008005)	MYBPH (ENSUPAG00010008035)	ADORA1 (ENSUPAG00010008063)	MYOG (ENSUPAG00010008083) ##22	PPFIA4 (ENSUPAG00010008098) ##25	TMEM183A (ENSUPAG00010008332)	ENSUPAG00010008346	ENSUPAG00010008348	ENSUPAG00010008352	CYB5R1 (ENSUPAG00010008356)	ADIPOR1 (ENSUPAG00010008368)	KLHL12 (ENSUPAG00010008378)	RABIF (ENSUPAG00010008393)	ENSUPAG00010008394	ENSUPAG00010008405	KDM5B (ENSUPAG00010008412)	SYT2 (ENSUPAG00010008425)	PPP1R12B (ENSUPAG00010008435)	UBE2T (ENSUPAG00010008502)
Alpin marmot	MODERN SPECIES	12	REN (ENSMMMG00000013806)	ETNK2 (ENSMMMG00000013779)	SOX13 (ENSMMMG00000013739)	SNRPE (ENSMMMG00000013676)	ENSMMMG00000013645 ##36	LAX1 (ENSMMMG00000013640)	ATP2B4 (ENSMMMG00000013598)	OPTC (ENSMMMG00000013524)	PRELP (ENSMMMG00000013516)	FMOD (ENSMMMG00000013497)	BTG2 (ENSMMMG00000013489)	CHIT1 (ENSMMMG00000013470)	CHI3L1 (ENSMMMG00000013425)	MYBPH (ENSMMMG00000013400)	ADORA1 (ENSMMMG00000013390)	MYOG (ENSMMMG00000013364) ##22	PPFIA4 (ENSMMMG00000013275) ##25	TMEM183A (ENSMMMG00000013263)	ENSMMMG00000013254	ENSMMMG00000013243	ENSMMMG00000013235	CYB5R1 (ENSMMMG00000013214)	ADIPOR1 (ENSMMMG00000013196)	KLHL12 (ENSMMMG00000013152)	RABIF (ENSMMMG00000013149)	ENSMMMG00000013130	ENSMMMG00000013124	KDM5B (ENSMMMG00000013071)	SYT2 (ENSMMMG00000013057)	PPP1R12B (ENSMMMG00000012900)	UBE2T (ENSMMMG00000012885)
Eurasian red squirrel	MODERN SPECIES	3	ENSSVLG00005007769	SNRPE (ENSSVLG00005007786)	ENSSVLG00005007861 ##36	ZBED6 (ENSSVLG00005007904)	LAX1 (ENSSVLG00005007924)	ATP2B4 (ENSSVLG00005007980)	OPTC (ENSSVLG00005008040)	PRELP (ENSSVLG00005008083)	FMOD (ENSSVLG00005008105)	BTG2 (ENSSVLG00005008142)	ENSSVLG00005008166	ENSSVLG00005008190	CHI3L1 (ENSSVLG00005008207)	MYBPH (ENSSVLG00005008287)	ENSSVLG00005008399	MYOG (ENSSVLG00005008444) ##22	PPFIA4 (ENSSVLG00005008501) ##25	TMEM183A (ENSSVLG00005008814)	ENSSVLG00005008850	ENSSVLG00005008880	ENSSVLG00005008903	ENSSVLG00005008934	CYB5R1 (ENSSVLG00005008962)	ADIPOR1 (ENSSVLG00005008999)	KLHL12 (ENSSVLG00005009054)	RABIF (ENSSVLG00005009111)	ENSSVLG00005009143	ENSSVLG00005009162	KDM5B (ENSSVLG00005009254)	SYT2 (ENSSVLG00005009529)	PPP1R12B (ENSSVLG00005009724)
Hystricomorpha	ANCESTRAL SPECIES	29	ENSGT00940000158759	ENSGT00390000012818.o.b	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.q.a	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000183165.b.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939
Hystricomorpha_a	ANCESTRAL SPECIES	13	ENSGT00940000158759	ENSGT00390000012818.o.b	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563.q.a	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Hystricomorpha_b	ANCESTRAL SPECIES	4	ENSGT00940000158759	ENSGT00390000012818.o.b	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163962	ENSGT00940000160784	ENSGT00940000154563.r	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079	ENSGT00940000160979
Long-tailed chinchilla	MODERN SPECIES	113	ETNK2 (ENSCLAG00000012729)	SOX13 (ENSCLAG00000012187)	ENSCLAG00000013355	ENSCLAG00000011966 ##36	ZBED6 (ENSCLAG00000017956)	LAX1 (ENSCLAG00000014362)	ATP2B4 (ENSCLAG00000012025)	OPTC (ENSCLAG00000011555)	PRELP (ENSCLAG00000013735)	FMOD (ENSCLAG00000013270)	BTG2 (ENSCLAG00000011760)	CHIT1 (ENSCLAG00000010708)	CHI3L1 (ENSCLAG00000013593)	MYBPH (ENSCLAG00000011779)	ADORA1 (ENSCLAG00000010628)	MYOG (ENSCLAG00000013979) ##22	PPFIA4 (ENSCLAG00000011878) ##25	TMEM183A (ENSCLAG00000013037)	ENSCLAG00000011787	CYB5R1 (ENSCLAG00000010011)	ADIPOR1 (ENSCLAG00000011742)	KLHL12 (ENSCLAG00000014551)	RABIF (ENSCLAG00000014300)	ENSCLAG00000013985	KDM5B (ENSCLAG00000014743)	SYT2 (ENSCLAG00000010287)	PPP1R12B (ENSCLAG00000014482)	UBE2T (ENSCLAG00000012486)	LGR6 (ENSCLAG00000013362)	ENSCLAG00000011824	PTPN7 (ENSCLAG00000012076)
Degu	MODERN SPECIES	50	ENSODEG00000013517	ENSODEG00000019942	SNRPE (ENSODEG00000013393)	ENSODEG00000012788 ##36	ZBED6 (ENSODEG00000019959)	ATP2B4 (ENSODEG00000013312)	ENSODEG00000020037	OPTC (ENSODEG00000011941)	PRELP (ENSODEG00000013597)	FMOD (ENSODEG00000012164)	BTG2 (ENSODEG00000012528)	CHIT1 (ENSODEG00000012946)	CHI3L1 (ENSODEG00000011673)	MYBPH (ENSODEG00000011869)	ADORA1 (ENSODEG00000012258)	MYOG (ENSODEG00000011506) ##22	PPFIA4 (ENSODEG00000011585) ##25	ENSODEG00000012180	ENSODEG00000012157	ENSODEG00000011458	ENSODEG00000019825	CYB5R1 (ENSODEG00000012060)	ADIPOR1 (ENSODEG00000011614)	ENSODEG00000014035	RABIF (ENSODEG00000012775)	ENSODEG00000012150	KDM5B (ENSODEG00000011605)	SYT2 (ENSODEG00000011128)	ENSODEG00000013339	ENSODEG00000020093	ENSODEG00000012820
Guinea pig	MODERN SPECIES	12	ETNK2 (ENSCPOG00000023063)	SOX13 (ENSCPOG00000006604)	ENSCPOG00000023757	ENSCPOG00000012421 ##36	ZBED6 (ENSCPOG00000036035)	LAX1 (ENSCPOG00000005721)	ATP2B4 (ENSCPOG00000005714)	OPTC (ENSCPOG00000009658)	PRELP (ENSCPOG00000031553)	FMOD (ENSCPOG00000034737)	BTG2 (ENSCPOG00000035133)	CHIT1 (ENSCPOG00000021800)	CHI3L1 (ENSCPOG00000005221)	MYBPH (ENSCPOG00000005216)	ADORA1 (ENSCPOG00000032582)	MYOG (ENSCPOG00000023459) ##22	PPFIA4 (ENSCPOG00000008983) ##25	TMEM183A (ENSCPOG00000027339)	ENSCPOG00000005380	CYB5R1 (ENSCPOG00000040552)	ADIPOR1 (ENSCPOG00000000482)	KLHL12 (ENSCPOG00000020314)	ENSCPOG00000023797	KDM5B (ENSCPOG00000010644)	SYT2 (ENSCPOG00000003309)	PPP1R12B (ENSCPOG00000000338)	UBE2T (ENSCPOG00000010279)	LGR6 (ENSCPOG00000035804)	PTPN7 (ENSCPOG00000003034)	ARL8A (ENSCPOG00000023243)	GPR37L1 (ENSCPOG00000031335)
Naked mole-rat female	MODERN SPECIES	16	SOX13 (ENSHGLG00000004023)	ENSHGLG00000004221	ENSHGLG00000005495 ##36	ZBED6 (ENSHGLG00000041611)	LAX1 (ENSHGLG00000048348)	ATP2B4 (ENSHGLG00000005394)	ENSHGLG00000003582	ENSHGLG00000050082	ENSHGLG00000003662	FMOD (ENSHGLG00000003978)	BTG2 (ENSHGLG00000034911)	CHIT1 (ENSHGLG00000004337)	CHI3L1 (ENSHGLG00000005828)	MYBPH (ENSHGLG00000007893)	ADORA1 (ENSHGLG00000004185)	MYOG (ENSHGLG00000004327) ##22	PPFIA4 (ENSHGLG00000005427) ##25	TMEM183A (ENSHGLG00000008174)	ENSHGLG00000040315	ENSHGLG00000047080	ENSHGLG00000008178	CYB5R1 (ENSHGLG00000008857)	ENSHGLG00000009199	KLHL12 (ENSHGLG00000010339)	RABIF (ENSHGLG00000011589)	ENSHGLG00000042202	ENSHGLG00000049280	KDM5B (ENSHGLG00000018432)	SYT2 (ENSHGLG00000016212)	ENSHGLG00000050689	ENSHGLG00000006122
Atlantogenata	ANCESTRAL SPECIES	18	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000154248.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000163962	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939
Xenarthra	ANCESTRAL SPECIES	45													ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00950000182825.A.a.a	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000164079	ENSGT00940000160979
Sloth	MODERN SPECIES	12676																MYOG (ENSCHOG00000009889) ##22
Armadillo	MODERN SPECIES	4356													CHI3L1 (ENSDNOG00000009518)	MYBPH (ENSDNOG00000015759)	ADORA1 (ENSDNOG00000037349)	MYOG (ENSDNOG00000032549) ##22	PPFIA4 (ENSDNOG00000017844) ##25	TMEM183A (ENSDNOG00000042915)	ENSDNOG00000045439	CYB5R1 (ENSDNOG00000008638)	ADIPOR1 (ENSDNOG00000042958)	KLHL12 (ENSDNOG00000010436)	ENSDNOG00000040354	ENSDNOG00000018314	ENSDNOG00000045214	KDM5B (ENSDNOG00000003205)	SYT2 (ENSDNOG00000042177)	PPP1R12B (ENSDNOG00000001035)	UBE2T (ENSDNOG00000047937)	ENSDNOG00000018475	ENSDNOG00000046615
Afrotheria	ANCESTRAL SPECIES	34	ENSGT00940000157898.e	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000163962	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079
Afrotheria_a	ANCESTRAL SPECIES	34	ENSGT00940000157898.e	ENSGT00950000182939.b.a.a	ENSGT00940000158759	ENSGT00390000012818.o.a.a.a.b	ENSGT00920000149095.a ##36	ENSGT00940000163411	ENSGT00390000014063	ENSGT00940000154527.a.a.a	ENSGT00940000160163	ENSGT00940000157007	ENSGT00950000182952.B	ENSGT00940000161149	ENSGT00940000161815	ENSGT00940000158040	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000163241	ENSGT00940000163962	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00390000016889	ENSGT00940000163751	ENSGT00940000157076	ENSGT00940000157586	ENSGT00940000157067	ENSGT00940000157365	ENSGT00940000159939	ENSGT00940000164079
Elephant	MODERN SPECIES	71	SOX13 (ENSLAFG00000015918)	SNRPE (ENSLAFG00000009349)	ENSLAFG00000010344 ##36	ENSLAFG00000031207 ##36	ZBED6 (ENSLAFG00000029775)	LAX1 (ENSLAFG00000010336)	ATP2B4 (ENSLAFG00000012442)	PRELP (ENSLAFG00000027913)	FMOD (ENSLAFG00000003588)	BTG2 (ENSLAFG00000031964)	CHIT1 (ENSLAFG00000017125)	CHI3L1 (ENSLAFG00000003983)	MYBPH (ENSLAFG00000001264)	ADORA1 (ENSLAFG00000001262)	ENSLAFG00000023356	MYOG (ENSLAFG00000013113) ##22	PPFIA4 (ENSLAFG00000018446) ##25	TMEM183A (ENSLAFG00000018443)	ENSLAFG00000030427	ENSLAFG00000026325	ENSLAFG00000030999	CYB5R1 (ENSLAFG00000003522)	ADIPOR1 (ENSLAFG00000003520)	KLHL12 (ENSLAFG00000003515)	RABIF (ENSLAFG00000031433)	ENSLAFG00000018012	KDM5B (ENSLAFG00000005104)	SYT2 (ENSLAFG00000018343)	PPP1R12B (ENSLAFG00000012724)	UBE2T (ENSLAFG00000015069)	LGR6 (ENSLAFG00000015055)
Hyrax	MODERN SPECIES	3265																MYOG (ENSPCAG00000006860) ##22	PPFIA4 (ENSPCAG00000006708) ##25
Tenrec	MODERN SPECIES	3953																MYOG (ENSETEG00000003043) ##22	ENSETEG00000003034 ##25
Platypus	MODERN SPECIES	18	TECR (ENSOANG00000003868)	NDUFB7 (ENSOANG00000050858)	ENSOANG00000049128	SNRPE (ENSOANG00000003101)	ENSOANG00000001915 ##36	ENSOANG00000041647	ATP2B4 (ENSOANG00000001912)	PRELP (ENSOANG00000045232)	FMOD (ENSOANG00000043665)	BTG2 (ENSOANG00000040119)	ENSOANG00000044868	CHIT1 (ENSOANG00000001909)	CHI3L1 (ENSOANG00000001907)	MYBPH (ENSOANG00000001906)	ADORA1 (ENSOANG00000043717)	MYOG (ENSOANG00000002107) ##22	PPFIA4 (ENSOANG00000039663) ##25	TMEM183A (ENSOANG00000002239)	ENSOANG00000009432	CYB5R1 (ENSOANG00000002686)	ADIPOR1 (ENSOANG00000010262)	KLHL12 (ENSOANG00000006287)	RABIF (ENSOANG00000006288)	ENSOANG00000028879	KDM5B (ENSOANG00000002512)	SYT2 (ENSOANG00000040777)	PPP1R12B (ENSOANG00000002514)	UBE2T (ENSOANG00000010964)	LGR6 (ENSOANG00000042275)	ENSOANG00000012568	PTPN7 (ENSOANG00000012567)
Anura	ANCESTRAL SPECIES	393															ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT00390000009310	ENSGT00940000170563
Frog	MODERN SPECIES	2	csde1 (ENSXETG00000021448)	ENSXETG00000021449	ampd1 (ENSXETG00000021450)	dennd2c (ENSXETG00000021454)	trim33 (ENSXETG00000021457)	ENSXETG00000042333	syt6 (ENSXETG00000001696)	olfml3 (ENSXETG00000001697)	hipk1 (ENSXETG00000001698)	ENSXETG00000041605	rab44 (ENSXETG00000041440)	cdkn1a (ENSXETG00000024887)	srsf3 (ENSXETG00000001701)	ENSXETG00000041500	adora1 (ENSXETG00000001702)	myog (ENSXETG00000001704) ##22	tmem183a (ENSXETG00000002408)	ENSXETG00000047138	ENSXETG00000034982	sirt2 (ENSXETG00000002409)	gpr161 (ENSXETG00000002410)	dpt (ENSXETG00000002411)	ENSXETG00000045586	atp1b1 (ENSXETG00000002414)	nme7 (ENSXETG00000002417)	blzf1 (ENSXETG00000002419)	ENSXETG00000039595	ENSXETG00000047446	slc19a2 (ENSXETG00000002422)	ENSXETG00000047971	f5 (ENSXETG00000002423)
Leishan spiny toad	MODERN SPECIES	5	ENSLLEG00000001223	KCNA2 (ENSLLEG00000001231)	ENSLLEG00000001243	KCNA10 (ENSLLEG00000001250)	NGF (ENSLLEG00000001266)	ENSLLEG00000001297	TSPAN2 (ENSLLEG00000001363)	ENSLLEG00000001374	ENSLLEG00000001383	ENSLLEG00000001394	TSHB (ENSLLEG00000001421)	ENSLLEG00000001433	SRSF3 (ENSLLEG00000001460)	ADORA1 (ENSLLEG00000001482)	ENSLLEG00000001492	MYOG (ENSLLEG00000001505) ##22	ENSLLEG00000001513	TMEM183A (ENSLLEG00000001528)	ENSLLEG00000001576	ENSLLEG00000001594	ENSLLEG00000001612	SIRT2 (ENSLLEG00000001627)	RSBN1 (ENSLLEG00000001647)	PHTF1 (ENSLLEG00000001666)	MAGI3 (ENSLLEG00000001760)	ENSLLEG00000002012	ENSLLEG00000002022	ENSLLEG00000002034	LRIG2 (ENSLLEG00000002045)	ENSLLEG00000002072	ENSLLEG00000002079
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	288			SOX6 (ENSLACG00000017676)	C11orf58 (ENSLACG00000017536)	PLEKHA7 (ENSLACG00000017451)	rps13 (ENSLACG00000017174)	PIK3C2A (ENSLACG00000017040)	rps13 (ENSLACG00000017012)	NUCB2 (ENSLACG00000016943)	ENSLACG00000016883	ENSLACG00000016827	KCNJ11 (ENSLACG00000016707)	ABCC8 (ENSLACG00000016365)	USH1C (ENSLACG00000016027)	OTOG (ENSLACG00000015455)	ENSLACG00000014612 ##22	zgc:172145 (ENSLACG00000014515)	MYOD1 (ENSLACG00000014430) ##22	KCNC1 (ENSLACG00000013857)	SERGEF (ENSLACG00000012618)	TPH1 (ENSLACG00000012424)	SAAL1 (ENSLACG00000011733)	HPS5 (ENSLACG00000011372)	GTF2H1 (ENSLACG00000011123)	LDHA (ENSLACG00000010504)	TSG101 (ENSLACG00000010221)	ENSLACG00000009769	SPTY2D1 (ENSLACG00000009475)	TMEM86A (ENSLACG00000008872)	IGSF22 (ENSLACG00000008077)	PTPN5 (ENSLACG00000007406)
Coelacanth	MODERN SPECIES	237	CDKN1A (ENSLACG00000008728)	ENSLACG00000009026	ENSLACG00000009583	ENSLACG00000009871	ENSLACG00000009938	cry3b (ENSLACG00000010538)	ENSLACG00000022539	LRIF1 (ENSLACG00000011605)	cry4 (ENSLACG00000012369)	DENND2D (ENSLACG00000012604)	DRAM2 (ENSLACG00000022493)	CEPT1 (ENSLACG00000013021)	MYBPH (ENSLACG00000013194)	ADORA1 (ENSLACG00000014019)	ENSLACG00000014521	MYOG (ENSLACG00000014874) ##22	PPFIA4 (ENSLACG00000014912) ##25	ENSLACG00000015407 #25	HIPK1 (ENSLACG00000015517)	AP4B1 (ENSLACG00000015784)	DCLRE1B (ENSLACG00000015870)	PTPN22 (ENSLACG00000016001)	RSBN1 (ENSLACG00000016161)	PHTF1 (ENSLACG00000016250)	MAGI3 (ENSLACG00000016389)	LRIG2 (ENSLACG00000016847)	SLC16A1 (ENSLACG00000016978)	ENSLACG00000017134	TAFA3 (ENSLACG00000017687)	PPM1J (ENSLACG00000017833)	ENSLACG00000017909
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00950000182959.a #22
Hagfish	MODERN SPECIES	821																ENSEBUG00000010500 #22
Vertebrata	ANCESTRAL SPECIES	606															ENSGT00940000157490	ENSGT00950000182959.b ##22
Gnathostomata	ANCESTRAL SPECIES	20	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00940000154404.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00530000064489	ENSGT01060000250538	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000186338	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b ##22
Euteleostomi	DUPLICATION
Euteleostomi	DUPLICATION
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000182959.b.a.a ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00950000182959.b.a.a ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00950000182959.b.a.a ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00950000182959.b.a.a ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00950000182959.b.a.a ##22
Otomorpha	ANCESTRAL SPECIES	542															ENSGT00940000157490	ENSGT00950000182959.b.a.a ##22	ENSGT00950000182959.b.a.b ##22	ENSGT00940000158477.a.b.b	ENSGT00940000153901.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.b
Otophysi	ANCESTRAL SPECIES																	ENSGT00950000182959.b.a.a ##22
Characiphysae	ANCESTRAL SPECIES																	ENSGT00950000182959.b.a.a ##22
Channel catfish	MODERN SPECIES	5	mrpl23 (ENSIPUG00000005383)	ENSIPUG00000005353	ENSIPUG00000005334	cpt1a (ENSIPUG00000005228)	nap1l4a (ENSIPUG00000005201)	phlda2 (ENSIPUG00000005186)	OSBPL5 (ENSIPUG00000005152)	ENSIPUG00000005122	ENSIPUG00000005070	dusp8a (ENSIPUG00000005041)	mob2a (ENSIPUG00000005022)	kcnj11 (ENSIPUG00000005009)	abcc8 (ENSIPUG00000004801)	ush1c (ENSIPUG00000004724)	zgc:172145 (ENSIPUG00000004699)	myod1 (ENSIPUG00000004693) ##22	tnnt3a (ENSIPUG00000004658)	ENSIPUG00000004650	ENSIPUG00000004645	ENSIPUG00000004583	tnni2 (ENSIPUG00000004539)	tnni2a.3 (ENSIPUG00000004514)	TNNI2 (ENSIPUG00000004491)	tnni2a.2 (ENSIPUG00000004477)	TNNI2 (ENSIPUG00000004462)	ENSIPUG00000004455	SYT8 (ENSIPUG00000004448)	PDCD2L (ENSIPUG00000004421)	banp (ENSIPUG00000004342)	ENSIPUG00000004314	znf469 (ENSIPUG00000004306)
Characiphysae_b	ANCESTRAL SPECIES																	ENSGT00950000182959.b.a.a ##22
Electric eel	MODERN SPECIES	236						ENSEEEG00000007618	nap1l4a (ENSEEEG00000007616)	phlda2 (ENSEEEG00000007614)	OSBPL5 (ENSEEEG00000007471)	ENSEEEG00000007463	dusp8a (ENSEEEG00000007456)	mob2a (ENSEEEG00000007448)	kcnj11 (ENSEEEG00000007443)	abcc8 (ENSEEEG00000007434)	ush1c (ENSEEEG00000007432)	myod1 (ENSEEEG00000007431) ##22	tnnt3a (ENSEEEG00000007429)	ENSEEEG00000007427	tnni2a.4 (ENSEEEG00000007412)	tnni2a.3 (ENSEEEG00000007394)	tnni2a.2 (ENSEEEG00000007393)	tnni2a.1 (ENSEEEG00000007391)	ENSEEEG00000007390	SYT8 (ENSEEEG00000007387)	pdcd2l (ENSEEEG00000007386)	banp (ENSEEEG00000007385)	ENSEEEG00000007384
Cyprinoidei	ANCESTRAL SPECIES	93	ENSGT00940000161238.k	ENSGT00950000182885.C.a	ENSGT00940000160745.d	ENSGT00390000007739	ENSGT00940000164715.b	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000160004.f	ENSGT01050000244956.a.a.n	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00920000149457	ENSGT00950000182959.b.a.a ##22	ENSGT00940000158477.a.b.a	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.g.a	ENSGT01030000234588.b.b.b.b.a.b.a.g.b	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00390000017767.a.b	ENSGT00950000182839.B.a.a.l ##33	ENSGT00940000155871	ENSGT00530000065415	ENSGT00390000011116.i	ENSGT00940000158339
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	296	ENSGT00940000161238.k.b	ENSGT00950000182885.C.a.a	ENSGT00940000160745.d.b	ENSGT00390000007739.a.b	ENSGT00940000164715.b.a	ENSGT01060000248595.b.a.b.a.n.a.b	ENSGT00940000169159.b	ENSGT00940000159535.g	ENSGT00940000156870.cb	ENSGT00940000160004.f.b	ENSGT01050000244956.a.a.n.a	ENSGT00990000203615.a.a.a.b.e	ENSGT00940000156626.w.a	ENSGT00950000183002.A.d	ENSGT00920000149457.b	ENSGT00950000182959.b.a.a.a ##22	ENSGT00940000158477.a.b.a	ENSGT00940000167812.c	ENSGT00940000153901.a.b.b.a	ENSGT01030000234588.b.b.b.b.a.b.a.g.b	ENSGT01030000234588.b.b.b.b.a.a.b.b	ENSGT01030000234588.b.b.b.b.a.a.a.a	ENSGT00940000160892	ENSGT00950000182839.B.a.a.l.b ##33	ENSGT00940000155871.k.a	ENSGT00940000155871.l	ENSGT00530000065415.a	ENSGT00390000011116.i.b	ENSGT00940000158339.b	ENSGT00940000155200.ec.b	ENSGT00390000001368.o
Goldfish	MODERN SPECIES	17	ENSCARG00000013197	mrpl23 (ENSCARG00000013181)	ENSCARG00000013069	nap1l4a (ENSCARG00000013043)	phlda2 (ENSCARG00000013035)	OSBPL5 (ENSCARG00000012856)	ENSCARG00000012825	ENSCARG00000012810	ENSCARG00000012795	dusp8a (ENSCARG00000012784)	mob2a (ENSCARG00000012767)	kcnj11 (ENSCARG00000012748)	abcc8 (ENSCARG00000011954)	ush1c (ENSCARG00000011715)	zgc:172145 (ENSCARG00000011680)	myod1 (ENSCARG00000011672) ##22	tnnt3a (ENSCARG00000011669)	ENSCARG00000011667	ENSCARG00000011653	tnni2a.1 (ENSCARG00000011629)	SYT8 (ENSCARG00000011614)	RASSF8 (ENSCARG00000011612) ##33	kras (ENSCARG00000011599)	ENSCARG00000011595	banp (ENSCARG00000011549)	pdcd2l (ENSCARG00000011542)	ENSCARG00000011509	FBXO31 (ENSCARG00000011416)	ENSCARG00000011380	ENSCARG00000011358	pkp3a (ENSCARG00000011246)
Cyprininae_a	ANCESTRAL SPECIES	16	ENSGT00940000161238.k.b	ENSGT00950000182885.C.a.a	ENSGT00940000160745.d.b	ENSGT00390000007739.b	ENSGT00940000164715.b.a	ENSGT01060000248595.b.a.b.a.n.a.b	ENSGT00940000169159.b	ENSGT00940000159535.g	ENSGT00940000156870.cb	ENSGT00940000160004.f.b	ENSGT01050000244956.a.a.n.a	ENSGT00990000203615.a.a.a.b.e	ENSGT00940000156626.w.a	ENSGT00950000183002.A.d	ENSGT00920000149457.b	ENSGT00950000182959.b.a.a.a ##22	ENSGT00940000158477.a.b.a	ENSGT00940000167812.c	ENSGT00940000153901.a.b.b.a	ENSGT00940000153901.a.b.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.g.b	ENSGT01030000234588.b.b.b.b.a.a.b.b	ENSGT01030000234588.b.b.b.b.a.a.a.a	ENSGT00940000160892	ENSGT00950000182839.B.a.a.l.b ##33	ENSGT00940000155871.l	ENSGT00530000065415.a	ENSGT00390000011116.i.b	ENSGT00940000158339.b	ENSGT00940000155200.ec.b.a	ENSGT00390000001368.o
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	366						nap1l4a (ENSSGRG00000041037)	phlda2 (ENSSGRG00000041036)	OSBPL5 (ENSSGRG00000039818)	ENSSGRG00000039787	dusp8a (ENSSGRG00000039777)	mob2a (ENSSGRG00000039776)	kcnj11 (ENSSGRG00000039775)	abcc8 (ENSSGRG00000039570)	ush1c (ENSSGRG00000039517)	zgc:172145 (ENSSGRG00000039515)	myod1 (ENSSGRG00000039484) ##22	tnnt3a (ENSSGRG00000039479)	ENSSGRG00000039475	ENSSGRG00000039467	tnni2a.4 (ENSSGRG00000039431)	ENSSGRG00000039428	ENSSGRG00000039427	ENSSGRG00000039426	RASSF8 (ENSSGRG00000039425) ##33	kras (ENSSGRG00000039378)	itpkcb (ENSSGRG00000039365)	zgc:153119 (ENSSGRG00000039362)	snrpa (ENSSGRG00000039361)	tbrg1 (ENSSGRG00000039290)	cfap45 (ENSSGRG00000039288)
Golden-line barbel	MODERN SPECIES	198														ush1c (ENSSGRG00000038778)	zgc:172145 (ENSSGRG00000038989)	myod1 (ENSSGRG00000038991) ##22	ENSSGRG00000038998	ENSSGRG00000039000	ENSSGRG00000039001	ENSSGRG00000039005	tnni2a.3 (ENSSGRG00000039007)	tnni2a.2 (ENSSGRG00000039009)	tnni2a.1 (ENSSGRG00000039014)	ENSSGRG00000039020	ENSSGRG00000039021	RASSF8 (ENSSGRG00000039023) ##33	kras (ENSSGRG00000039029)	ENSSGRG00000039099	ENSSGRG00000039100	pdcd2l (ENSSGRG00000039101)	ENSSGRG00000039102
Common carp reference	MODERN SPECIES	37	ENSCCRG00000031922	ENSCCRG00000031052	nap1l4a (ENSCCRG00000031099)	phlda2 (ENSCCRG00000059697)	ENSCCRG00000031128	ENSCCRG00000068830	ENSCCRG00000066001	ENSCCRG00000070357	dusp8a (ENSCCRG00000066543)	mob2a (ENSCCRG00000062835)	kcnj11 (ENSCCRG00000078656)	ENSCCRG00000078356	abcc8 (ENSCCRG00000006460)	ush1c (ENSCCRG00000013479)	zgc:172145 (ENSCCRG00000059740)	myod1 (ENSCCRG00000049312) ##22	tnnt3a (ENSCCRG00000062720)	ENSCCRG00000007936	ENSCCRG00000007923	tnni2a.3 (ENSCCRG00000007849)	tnni2a.2 (ENSCCRG00000064585)	tnni2a.1 (ENSCCRG00000039838)	SYT8 (ENSCCRG00000059526)	ENSCCRG00000069031 ##33	kras (ENSCCRG00000024099)	ENSCCRG00000053006	ENSCCRG00000058767	banp (ENSCCRG00000043253)	pdcd2l (ENSCCRG00000015904)	ENSCCRG00000059814	ENSCCRG00000071670
Cyprininae	ANCESTRAL SPECIES	219	ENSGT00950000182885.C.a.b	ENSGT00940000160745.d.a	ENSGT00390000007739.a.a	ENSGT00940000164715.b.b	ENSGT01060000248595.b.a.b.a.n.a.a	ENSGT00940000169159.a	ENSGT00440000039564.a.b	ENSGT00940000159535.h	ENSGT00940000156870.bb.b.a	ENSGT00940000160004.f.a	ENSGT01050000244956.a.a.n.b	ENSGT00990000203615.a.a.a.b.f	ENSGT00940000156626.w.b	ENSGT00950000183002.A.c	ENSGT00920000149457.a	ENSGT00950000182959.b.a.a.b ##22	ENSGT00940000158477.b	ENSGT00940000167812.d	ENSGT00940000153901.a.b.b.b	ENSGT01030000234588.b.b.b.b.a.a.b.a	ENSGT01030000234588.b.b.b.b.a.a.a.b	ENSGT01030000234858	ENSGT00390000017767.a.b	ENSGT00950000182839.B.a.a.l.a ##33	ENSGT00940000155871.k.b	ENSGT00530000065415.b	ENSGT00390000011116.i.a	ENSGT00940000158339.a	ENSGT00940000155200.ec.a	ENSGT00390000001368.p	ENSGT00390000011067.B
Cyprininae_a	ANCESTRAL SPECIES	154	ENSGT00950000182885.C.a.b	ENSGT00940000160745.d.a	ENSGT00390000007739.a.a	ENSGT00940000164715.b.b	ENSGT01060000248595.b.a.b.a.n.a.a	ENSGT00940000169159.a	ENSGT00440000039564.a.b	ENSGT00940000159535.h	ENSGT00940000156870.bb.b.a	ENSGT00940000160004.f.a	ENSGT01050000244956.a.a.n.b	ENSGT00990000203615.a.a.a.b.f	ENSGT00940000156626.w.b	ENSGT00950000183002.A.c	ENSGT00920000149457.a	ENSGT00950000182959.b.a.a.b ##22	ENSGT00940000158477.b	ENSGT00940000167812.d	ENSGT01030000234588.b.b.b.b.a.a.b.a	ENSGT01030000234588.b.b.b.b.a.a.a.b	ENSGT01030000234858	ENSGT00390000017767.a.b	ENSGT00950000182839.B.a.a.l.a ##33	ENSGT00940000155871.k.b	ENSGT00530000065415.b	ENSGT00390000011116.i.a	ENSGT00390000011116.j	ENSGT00940000158339.a	ENSGT00940000155200.ec.a	ENSGT00390000001368.p	ENSGT00390000011067.B
Common carp reference	MODERN SPECIES	33	ENSCCRG00000076888	nap1l4a (ENSCCRG00000053707)	phlda2 (ENSCCRG00000031114)	ENSCCRG00000050262	ENSCCRG00000006126	ENSCCRG00000070395	ENSCCRG00000075142	ENSCCRG00000022539	dusp8a (ENSCCRG00000056844)	mob2a (ENSCCRG00000008336)	kcnj11 (ENSCCRG00000075210)	abcc8 (ENSCCRG00000004760)	ush1c (ENSCCRG00000014177)	ENSCCRG00000081027	zgc:172145 (ENSCCRG00000074849)	myod1 (ENSCCRG00000078915) ##22	TNNT3 (ENSCCRG00000056652)	ENSCCRG00000059451	ENSCCRG00000049337	tnni2a.3 (ENSCCRG00000067810)	tnni2a.2 (ENSCCRG00000007838)	SYT8 (ENSCCRG00000007820)	ENSCCRG00000049349	ENSCCRG00000024104 ##33	kras (ENSCCRG00000049418)	ENSCCRG00000062479	banp (ENSCCRG00000029986)	ENSCCRG00000068910	pdcd2l (ENSCCRG00000043265)	ENSCCRG00000015852	ENSCCRG00000043287
Goldfish	MODERN SPECIES	45	th (ENSCARG00000050601)	igf2b (ENSCARG00000050562)	mrpl23 (ENSCARG00000050540)	ENSCARG00000050525	ENSCARG00000049918	nap1l4a (ENSCARG00000049783)	phlda2 (ENSCARG00000049767)	OSBPL5 (ENSCARG00000048773)	ENSCARG00000048706	dusp8a (ENSCARG00000048679)	mob2a (ENSCARG00000048612)	kcnj11 (ENSCARG00000048580)	abcc8 (ENSCARG00000047502)	ush1c (ENSCARG00000047304)	zgc:172145 (ENSCARG00000047288)	myod1 (ENSCARG00000047275) ##22	ENSCARG00000047262	tnni2a.3 (ENSCARG00000047250)	ENSCARG00000047242	tnni2a.2 (ENSCARG00000047218)	tnni2a.1 (ENSCARG00000047183)	ENSCARG00000047172	RASSF8 (ENSCARG00000047148) ##33	kras (ENSCARG00000047124)	ENSCARG00000047116	ENSCARG00000047113	banp (ENSCARG00000047101)	pdcd2l (ENSCARG00000070326)	ENSCARG00000070322	FBXO31 (ENSCARG00000070320)	dynlrb2 (ENSCARG00000070319)
Zebrafish	MODERN SPECIES	17	slc27a2b (ENSDARG00000100731)	ENSDARG00000079374	ENSDARG00000062632	DUOXA2 (ENSDARG00000078962)	ENSDARG00000063314	eif3ja (ENSDARG00000012603)	EIF3J (ENSDARG00000097988)	ENSDARG00000097169	parp16 (ENSDARG00000018593)	scamp5a (ENSDARG00000018743)	ubl7a (ENSDARG00000024229)	acot19 (ENSDARG00000040427)	lamb4 (ENSDARG00000039133)	lamb1a (ENSDARG00000101209)	zgc:172145 (ENSDARG00000045586)	myod1 (ENSDARG00000030110) ##22	tnnt3a (ENSDARG00000030270)	ENSDARG00000097224	ENSDARG00000027310	tnni2a.4 (ENSDARG00000029069)	tnni2a.3 (ENSDARG00000013752)	tnni2a.2 (ENSDARG00000005841)	tnni2a.1 (ENSDARG00000045592)	ENSDARG00000110361	RASSF8 (ENSDARG00000045596) ##33	kras (ENSDARG00000010844)	ENSDARG00000115365	banp (ENSDARG00000017562)	pdcd2l (ENSDARG00000002754)	ENSDARG00000101726	ENSDARG00000104818
Clupeiformes	ANCESTRAL SPECIES	541															ENSGT00940000157490	ENSGT00950000182959.b.a.a ##22	ENSGT00950000182959.b.a.b ##22	ENSGT00940000158477.a.b.b	ENSGT01030000234990	ENSGT00940000153901.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.b
Denticle herring	MODERN SPECIES	7	insyn1 (ENSDCDG00000026965)	cd276 (ENSDCDG00000026962)	ubl7b (ENSDCDG00000026959)	SHF (ENSDCDG00000026956)	ENSDCDG00000026953	ENSDCDG00000026948	ube2q1 (ENSDCDG00000026915)	CHRNB4 (ENSDCDG00000026897)	CHRNA3 (ENSDCDG00000026890)	ENSDCDG00000026881	ENSDCDG00000026877	chrna5 (ENSDCDG00000026872)	ENSDCDG00000026869	ABCC8 (ENSDCDG00000026610)	OTOG (ENSDCDG00000026583)	myod1 (ENSDCDG00000026580) ##22	tnnt3b (ENSDCDG00000026571)	ENSDCDG00000026556	ENSDCDG00000026554	ENSDCDG00000026552	tnni2b.1 (ENSDCDG00000026551)	tnni2b.2 (ENSDCDG00000026548)	galns (ENSDCDG00000026497)	trappc2l (ENSDCDG00000026484)	PABPN1L (ENSDCDG00000026482)	CBFA2T3 (ENSDCDG00000026480)	ACSF3 (ENSDCDG00000026303)	pacsin3 (ENSDCDG00000026254)	FADD (ENSDCDG00000026252)	ano1a (ENSDCDG00000022511)	zgc:153993 (ENSDCDG00000022398)
Euteleosteomorpha	ANCESTRAL SPECIES	261		ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a	ENSGT00940000154914	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b.e	ENSGT00530000062962.b.a.e	ENSGT00940000156926.d	ENSGT00940000153246.a.a.a.d	ENSGT00940000160967.f	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.a.a ##22	ENSGT00940000158477.a.a	ENSGT01030000234588.b.b.b.b.a.b.b
Protacanthopterygii	ANCESTRAL SPECIES	101	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a	ENSGT00940000154914.vb	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b.e	ENSGT00530000062962.b.a.e	ENSGT00940000155744.t.a	ENSGT00940000156926.d	ENSGT00940000153246.a.a.a.d	ENSGT00940000160967.f	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.a.a ##22	ENSGT00940000158477.a.a	ENSGT01000000216979	ENSGT00940000153901.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00940000159464	ENSGT00390000001802	ENSGT00940000158707.a.a	ENSGT00940000160309.e.b	ENSGT00940000178634	ENSGT00390000004215.a.b.b.c.a.b.a.c	ENSGT00390000004417.b	ENSGT00940000155010.a	ENSGT00940000159150	ENSGT00940000163421.a.d.a	ENSGT00940000156938.e
Salmoninae	ANCESTRAL SPECIES	1	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a	ENSGT00940000154914.vb	ENSGT00940000155836.B.j	ENSGT01030000234532.B.e.b.e	ENSGT00530000062962.b.a.e	ENSGT00940000155744.t.a	ENSGT00940000156926.d	ENSGT00940000153246.a.a.a.d	ENSGT00940000160967.f	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.a.a ##22	ENSGT00940000158477.a.a	ENSGT01000000216979	ENSGT00940000153901.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.e.b.b	ENSGT01030000234588.b.b.b.b.a.a.b.c	ENSGT00940000160892.f	ENSGT00940000155733.a.a	ENSGT00940000162463	ENSGT00940000160974.b.d	ENSGT00940000159464	ENSGT00390000001802	ENSGT00940000158707.a.a	ENSGT00940000160309.e.b	ENSGT00390000004215.a.b.b.c.a.b.a.c.b
Salmoninae_a	ANCESTRAL SPECIES	85	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a.i.a	ENSGT00940000154914.vb	ENSGT00940000155836.B.j	ENSGT01030000234532.B.e.b.e	ENSGT00530000062962.b.a.e	ENSGT00940000155744.t.a	ENSGT00940000156926.d	ENSGT00940000153246.a.a.a.d	ENSGT00940000160967.f	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.a.a ##22	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.b.b.a.b	ENSGT01030000234588.b.b.b.b.a.b.b.b	ENSGT00940000159464	ENSGT00390000001802	ENSGT00940000158707.a.a	ENSGT00940000160309.e.b	ENSGT00390000004215.a.b.b.c.a.b.a.c.b	ENSGT00390000004417.b	ENSGT01010000223078	ENSGT00940000155024.a.b.c.b.a.b	ENSGT00940000164815.b	ENSGT00940000158999.l
Oncorhynchus	ANCESTRAL SPECIES	280																ENSGT00950000182959.b.a.a ##22	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT01000000216979
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	18	tipin (ENSOMYG00000050576)	dis3l (ENSOMYG00000048031)	ENSOMYG00000021812	ENSOMYG00000074521	RAB11A (ENSOMYG00000026657)	DENND4A (ENSOMYG00000065265)	SLC24A1 (ENSOMYG00000004910)	HACD3 (ENSOMYG00000040606)	ENSOMYG00000074482	ENSOMYG00000054709	ENSOMYG00000062139	ENSOMYG00000061598	ENSOMYG00000076821	ENSOMYG00000040832	ENSOMYG00000052295	myod (ENSOMYG00000061213) ##22	ENSOMYG00000014317	ENSOMYG00000051029	ENSOMYG00000060665	ENSOMYG00000029106	ENSOMYG00000067636	ENSOMYG00000070828	ENSOMYG00000029425	ENSOMYG00000058923	ENSOMYG00000057894	ENSOMYG00000077868	ENSOMYG00000054869	ENSOMYG00000062350	ENSOMYG00000059180	ENSOMYG00000065256	ENSOMYG00000064251
Rainbow trout	MODERN SPECIES	27	tipin (ENSOMYG00000074288)	dis3l (ENSOMYG00000052777)	ENSOMYG00000062709	RAB11A (ENSOMYG00000049890)	DENND4A (ENSOMYG00000076284)	SLC24A1 (ENSOMYG00000004858)	HACD3 (ENSOMYG00000059785)	ENSOMYG00000023825	ENSOMYG00000004974	ENSOMYG00000050119	ENSOMYG00000005006	ENSOMYG00000005082	ENSOMYG00000060149	ENSOMYG00000063706	ENSOMYG00000069614	myod1 (ENSOMYG00000029242) ##22	TNNT3 (ENSOMYG00000049303)	ENSOMYG00000055514	ENSOMYG00000029082	ENSOMYG00000057374	ENSOMYG00000029399	ENSOMYG00000030016	ENSOMYG00000030025	ENSOMYG00000029435	CTSD (ENSOMYG00000029741)	ENSOMYG00000050352	ENSOMYG00000072011	ENSOMYG00000030266	ENSOMYG00000030436	ENSOMYG00000062215	ENSOMYG00000077711
Oncorhynchus_a	ANCESTRAL SPECIES	299																ENSGT00950000182959.b.a.a ##22	ENSGT00940000158477.a.a	ENSGT01000000216979	ENSGT01030000234588.b.b.b.b.a.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.b.b.a.b	ENSGT01030000234588.b.b.b.b.a.b.b.b
Chinook salmon	MODERN SPECIES	770																myod1 (ENSOTSG00005017359) ##22	TNNT3 (ENSOTSG00005017364)
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	311															ENSOKIG00005032064	MYOD1 (ENSOKIG00005032085) ##22	TNNT3 (ENSOKIG00005032107)
Coho salmon	MODERN SPECIES	32	dis3l (ENSOKIG00005040437)	rab11a (ENSOKIG00005041589)	ENSOKIG00005041640	ENSOKIG00005041656	DENND4A (ENSOKIG00005041726)	ENSOKIG00005042607	SLC24A1 (ENSOKIG00005042621)	HACD3 (ENSOKIG00005042645)	arih1l (ENSOKIG00005042766)	NR2E3 (ENSOKIG00005043003)	ENSOKIG00005017602	ENSOKIG00005017668	aph1b (ENSOKIG00005017675)	OTOG (ENSOKIG00005017697)	ENSOKIG00005017845	MYOD1 (ENSOKIG00005017854) ##22	TNNT3 (ENSOKIG00005017863)	ENSOKIG00005017897	tnni2b.1 (ENSOKIG00005017921)	tnni2b.1 (ENSOKIG00005017934)	TNNI2 (ENSOKIG00005017950)	ENSOKIG00005017958	ENSOKIG00005017964	CTSD (ENSOKIG00005018062)	ENSOKIG00005019667	drd4b (ENSOKIG00005019681)	SIRT3 (ENSOKIG00005019692)	psmd13 (ENSOKIG00005019710)	ENSOKIG00005019823	ENSOKIG00005019845	ENSOKIG00005019859
Salmo	ANCESTRAL SPECIES	112	ENSGT00530000063106.B.j	ENSGT00940000155333.A.a.i.a	ENSGT00940000154914.vb.b	ENSGT00940000155836.B.j.a	ENSGT00940000155333.A.a.j	ENSGT00940000154914.vb.a	ENSGT00940000155836.B.j.b	ENSGT01030000234532.B.e.b.e	ENSGT00530000062962.b.a.e.a	ENSGT00940000155744.t.a	ENSGT00940000156926.d.b	ENSGT00940000153246.a.a.a.d	ENSGT00940000160967.f.b	ENSGT00390000002049.c.b.l	ENSGT00940000157490	ENSGT00950000182959.b.a.a ##22	ENSGT00940000158477.a.a.c	ENSGT01000000216979.a	ENSGT00940000158477.a.a.d	ENSGT00940000153901.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.b.b.a.b	ENSGT01030000234588.b.b.b.b.a.b.b.b	ENSGT00940000163911.b.c.a.b	ENSGT00940000162463.a	ENSGT00940000160974.b.d.j
River trout	DUPLICATION
River trout	MODERN SPECIES	21	ENSSTUG00000005865	crybgx (ENSSTUG00000005860)	lctla (ENSSTUG00000005848)	tipin (ENSSTUG00000005839)	dis3l (ENSSTUG00000005812)	ENSSTUG00000005780	rab11a (ENSSTUG00000005754)	dennd4a (ENSSTUG00000004971)	SLC24A1 (ENSSTUG00000004931)	HACD3 (ENSSTUG00000004705)	ARIH1 (ENSSTUG00000004569)	NR2E3 (ENSSTUG00000004529)	ENSSTUG00000004489	ENSSTUG00000004484	aph1b (ENSSTUG00000004478)	myod1 (ENSSTUG00000004466) ##22	TNNT3 (ENSSTUG00000004390)	ENSSTUG00000004371	ENSSTUG00000004360	tnni2b.1 (ENSSTUG00000004312)	TNNI2 (ENSSTUG00000004289)	ENSSTUG00000004274	ENSSTUG00000004269	ctsd (ENSSTUG00000003756)	ENSSTUG00000003710	drd4b (ENSSTUG00000003691)	ENSSTUG00000035126	sirt3 (ENSSTUG00000035121)	psmd13 (ENSSTUG00000035024)	ENSSTUG00000035009	SLC7A5 (ENSSTUG00000034374)
River trout	MODERN SPECIES	3	ENSSTUG00000007012	ppfia1 (ENSSTUG00000004645) ##25	tmod2 (ENSSTUG00000004523)	leo1 (ENSSTUG00000004341)	ENSSTUG00000004325	rab11a (ENSSTUG00000004309)	dennd4a (ENSSTUG00000002300)	SLC24A1 (ENSSTUG00000002229)	HACD3 (ENSSTUG00000002183)	arih1l (ENSSTUG00000002114)	NR2E3 (ENSSTUG00000002100)	ENSSTUG00000002080	ENSSTUG00000002075	aph1b (ENSSTUG00000002066)	OTOG (ENSSTUG00000001950)	myod1 (ENSSTUG00000001933) ##22	ENSSTUG00000001917	ENSSTUG00000001903	tnni2b.1 (ENSSTUG00000001896)	TNNI2 (ENSSTUG00000001889)	ENSSTUG00000001875	ENSSTUG00000001870	ENSSTUG00000001858	ctsd (ENSSTUG00000001706)	ENSSTUG00000001686	ENSSTUG00000001681	drd4b (ENSSTUG00000001673)	sirt3 (ENSSTUG00000001668)	psmd13 (ENSSTUG00000001588)	ENSSTUG00000001580	SLC7A5 (ENSSTUG00000001349)
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	2	ENSSSAG00000008839	tipin (ENSSSAG00000082602)	ENSSSAG00000103573	RAB11A (ENSSSAG00000099276)	DENND4A (ENSSSAG00000100635)	SLC24A1 (ENSSSAG00000009849)	HACD3 (ENSSSAG00000009594)	ENSSSAG00000099816	ENSSSAG00000072984	ENSSSAG00000101082	ENSSSAG00000094543	ENSSSAG00000104282	ENSSSAG00000113698	ENSSSAG00000096205	TNNT3 (ENSSSAG00000010002)	myod1 (ENSSSAG00000040107) ##22	ENSSSAG00000084840	ENSSSAG00000108614	TNNI2 (ENSSSAG00000009799)	tnni2b.2 (ENSSSAG00000115361)	ENSSSAG00000102508	ENSSSAG00000096849	ENSSSAG00000111535	ENSSSAG00000120009	ENSSSAG00000114143	ENSSSAG00000110591	ENSSSAG00000013813	ENSSSAG00000095829	ENSSSAG00000040098	CTSD (ENSSSAG00000010227)	ENSSSAG00000010218
Atlantic salmon	MODERN SPECIES	18	lctla (ENSSSAG00000043842)	tipin (ENSSSAG00000043439)	dis3l (ENSSSAG00000121052)	ENSSSAG00000092940	RAB11A (ENSSSAG00000062971)	DENND4A (ENSSSAG00000082487)	SLC24A1 (ENSSSAG00000010183)	HACD3 (ENSSSAG00000095799)	ENSSSAG00000095519	ENSSSAG00000009961	ENSSSAG00000009811	ENSSSAG00000119131	ENSSSAG00000010246	ENSSSAG00000104869	ENSSSAG00000056579	ENSSSAG00000010004 ##22	TNNT3 (ENSSSAG00000009998)	ENSSSAG00000108582	ENSSSAG00000103815	ENSSSAG00000095150	TNNI2 (ENSSSAG00000084513)	TNNI2 (ENSSSAG00000010176)	tnni2b.2 (ENSSSAG00000010154)	ENSSSAG00000101599	ENSSSAG00000009981	ENSSSAG00000027269	ENSSSAG00000102956	ENSSSAG00000094753	ENSSSAG00000058230	ENSSSAG00000105548	ENSSSAG00000105539
Huchen	MODERN SPECIES	6393																myod1 (ENSHHUG00000024826) ##22	TNNT3 (ENSHHUG00000024664)
Northern pike	MODERN SPECIES	1	crybgx (ENSELUG00000019531)	lctla (ENSELUG00000019497)	tipin (ENSELUG00000019453)	dis3l (ENSELUG00000019420)	ENSELUG00000019353	RAB11B (ENSELUG00000019240)	dennd4a (ENSELUG00000000821)	SLC24A1 (ENSELUG00000019158)	HACD3 (ENSELUG00000019142)	arih1l (ENSELUG00000019125)	NR2E3 (ENSELUG00000019079)	ENSELUG00000019041	ENSELUG00000018968	aph1b (ENSELUG00000018962)	OTOG (ENSELUG00000018933)	MYOD1 (ENSELUG00000018844) ##22	TNNT3 (ENSELUG00000018827)	ENSELUG00000026443	ENSELUG00000018803	ENSELUG00000018743	tnni2b.1 (ENSELUG00000018719)	ENSELUG00000028322	ENSELUG00000028980	ENSELUG00000033770	ENSELUG00000027344	ENSELUG00000028989	ctsd (ENSELUG00000018601)	ENSELUG00000018575	drd4b (ENSELUG00000018550)	sirt3 (ENSELUG00000018526)	psmd13 (ENSELUG00000018515)
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00950000182959.b.a.a ##22
Cod	MODERN SPECIES	5	ENSGMOG00000012317	immp1l (ENSGMOG00000012313)	ELP4 (ENSGMOG00000012307)	pax6b (ENSGMOG00000012304)	wt1b (ENSGMOG00000012296)	eif3m (ENSGMOG00000012291)	prrg4 (ENSGMOG00000012288)	QSER1 (ENSGMOG00000024870)	cstf3 (ENSGMOG00000012275)	hipk3b (ENSGMOG00000012267)	ENSGMOG00000012262	spon1a (ENSGMOG00000013410)	ENSGMOG00000013397	ENSGMOG00000011343	ENSGMOG00000011350	ENSGMOG00000035611 ##22	TNNT3 (ENSGMOG00000011393)	ENSGMOG00000028561	tnni2b.1 (ENSGMOG00000018981)	ENSGMOG00000018961	ENSGMOG00000018911	ENSGMOG00000006402	ENSGMOG00000025002	ENSGMOG00000006378	ENSGMOG00000025333	ENSGMOG00000006346	ENSGMOG00000006331	ENSGMOG00000003209	ENSGMOG00000003176	ENSGMOG00000003144	ENSGMOG00000002967
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000182959.b.a.b ##22
Actinopterygii	ANCESTRAL SPECIES	174																ENSGT00950000182959.b.a.b ##22	ENSGT00940000158477	ENSGT00940000167812	ENSGT00940000153901.a.b	ENSGT01030000234990	ENSGT01030000234588.b.b.b.b.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00390000017767.a	ENSGT00940000155733.a.a	ENSGT00940000162463	ENSGT00940000160974.b	ENSGT00940000159701	ENSGT00940000160208	ENSGT00390000014700.b.a.a	ENSGT00940000159464
Neopterygii	ANCESTRAL SPECIES	4																ENSGT00950000182959.b.a.b ##22	ENSGT00940000158477	ENSGT00940000167812	ENSGT00940000153901.a.b	ENSGT01030000234990	ENSGT01030000234588.b.b.b.b.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00390000017767.a.b	ENSGT00940000155733.a.a	ENSGT00940000178524	ENSGT00940000162463	ENSGT00940000160974.b	ENSGT00940000159701	ENSGT00940000160208	ENSGT00390000014700.b.a.a
Osteoglossocephalai	ANCESTRAL SPECIES	105	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916	ENSGT00940000160004	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000158477.a.a	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00950000182959.b.a.b ##22	ENSGT00940000158477.a.b	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234990	ENSGT00940000153901.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234858	ENSGT00940000160892	ENSGT00390000017767.a.b	ENSGT00940000155733.a.a	ENSGT00940000164955.a	ENSGT00940000162463	ENSGT00940000160974.b
Clupeocephala	ANCESTRAL SPECIES	145					ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916	ENSGT00940000160004	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00920000149457	ENSGT00950000182959.b.a.b ##22	ENSGT00940000158477.a.b	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT01030000234990	ENSGT00940000177294	ENSGT00940000153901.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00390000017767.a.b	ENSGT00940000155733.a.a	ENSGT00940000164955.a	ENSGT00940000160974.b.d
Otomorpha	ANCESTRAL SPECIES	542														ENSGT00940000157490	ENSGT00950000182959.b.a.a ##22	ENSGT00950000182959.b.a.b ##22	ENSGT00940000158477.a.b.b	ENSGT00940000153901.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.b
Clupeiformes	ANCESTRAL SPECIES	541														ENSGT00940000157490	ENSGT00950000182959.b.a.a ##22	ENSGT00950000182959.b.a.b ##22	ENSGT00940000158477.a.b.b	ENSGT01030000234990	ENSGT00940000153901.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.b
Atlantic herring	DUPLICATION
Atlantic herring	MODERN SPECIES	19				ENSCHAG00000021436	ENSCHAG00000021043	ENSCHAG00000020425	ENSCHAG00000020389	ENSCHAG00000020373	ENSCHAG00000020362	dusp8a (ENSCHAG00000020357)	mob2a (ENSCHAG00000020294)	kcnj11 (ENSCHAG00000020282)	abcc8 (ENSCHAG00000017040)	ush1c (ENSCHAG00000016858)	zgc:172145 (ENSCHAG00000016847)	MYOD1 (ENSCHAG00000016826) ##22	tnnt3a (ENSCHAG00000016794)	ENSCHAG00000016791	ENSCHAG00000016765	TNNI2 (ENSCHAG00000016750)	tnni2a.4 (ENSCHAG00000016547)	TNNI2 (ENSCHAG00000016508)	TNNI2 (ENSCHAG00000016464)	TNNI2 (ENSCHAG00000016374)	TNNI2 (ENSCHAG00000016334)	TNNI2 (ENSCHAG00000016279)	TNNI2 (ENSCHAG00000016273)	TNNI2 (ENSCHAG00000016209)	TNNI2 (ENSCHAG00000016193)	TNNI2 (ENSCHAG00000016160)	tnni2a.2 (ENSCHAG00000016153)
Atlantic herring	MODERN SPECIES	22	MICAL2 (ENSCHAG00000017792)	atpv0e2 (ENSCHAG00000017756)	cars1 (ENSCHAG00000015312)	nap1l4b (ENSCHAG00000015163)	PHLDA2 (ENSCHAG00000015146)	PHLDA2 (ENSCHAG00000015121)	slc22a18 (ENSCHAG00000015000)	OSBPL5 (ENSCHAG00000013553)	ENSCHAG00000013402	PTPN5 (ENSCHAG00000013347)	DUSP8 (ENSCHAG00000013334)	mob2b (ENSCHAG00000013224)	KCNJ11 (ENSCHAG00000013212)	ABCC8 (ENSCHAG00000005413)	OTOG (ENSCHAG00000004569)	MYOD1 (ENSCHAG00000004523) ##22	tnnt3b (ENSCHAG00000004458)	ENSCHAG00000004444	ENSCHAG00000004434	tnni2b.1 (ENSCHAG00000004290)	ENSCHAG00000004279	ENSCHAG00000004256	ENSCHAG00000004224	ENSCHAG00000004218	DBNDD1 (ENSCHAG00000004207)	ENSCHAG00000004200	ENSCHAG00000002366	def8 (ENSCHAG00000002070)	ENSCHAG00000002030	mc1r (ENSCHAG00000002013)	tcf25 (ENSCHAG00000001359)
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00950000182959.b.a.b ##22
Protacanthopterygii	ANCESTRAL SPECIES	42	ENSGT00390000002524	ENSGT00950000183042.a.b.b	ENSGT00950000186379	ENSGT00940000160180	ENSGT00940000154917	ENSGT00730000111305	ENSGT00940000163501	ENSGT00390000016453.m	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00920000149457	ENSGT00950000182959.b.a.b ##22	ENSGT00940000158477.a.b	ENSGT00940000153901.a.b.b	ENSGT00940000167812	ENSGT00940000177178	ENSGT01030000234588.b.b.b.b.a.b.a.e.a	ENSGT01030000234588.b.b.b.b.a.b.a.e.b	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00390000017767.a.b	ENSGT00940000155733.a.a	ENSGT00940000164955.a	ENSGT00940000160974.b.d	ENSGT00940000162463
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	519								ENSGT00390000016453.n.b	ENSGT00390000008931.g	ENSGT00390000011262.e.a.b.b	ENSGT00940000165218.b	ENSGT00940000160625.r.a.b	ENSGT00940000155997.lb.b.u	ENSGT00940000157572.a.b.c	ENSGT00920000149457.c	ENSGT00950000182959.b.a.b.c ##22	ENSGT00940000158477.a.b.c	ENSGT00940000167812.e	ENSGT00940000177178	ENSGT00940000153901.a.b.b.d	ENSGT01030000234588.b.b.b.b.a.b.a.e.a	ENSGT01030000234588.b.b.b.b.a.b.a.e.b.a	ENSGT01030000234588.b.b.b.b.a.a.b.d	ENSGT01030000234588.b.b.b.b.a.a.a.f	ENSGT00940000160892.e	ENSGT00390000017767.a.b
Salmoninae_a	ANCESTRAL SPECIES	13	ENSGT00940000165017.a.e	ENSGT01050000244882.a.a.a.a.a.d	ENSGT01100000266261	ENSGT00390000003450.e	ENSGT00940000164030.i.b	ENSGT00390000001285.j.c	ENSGT00940000154917.fb.a	ENSGT00390000016453.n.a	ENSGT00390000008931.g	ENSGT00390000011262.e.a.b.b	ENSGT00940000165218.b	ENSGT00940000160625.r.a.b	ENSGT00940000155997.lb.b.u	ENSGT00940000157572.a.b.c	ENSGT00920000149457.c	ENSGT00950000182959.b.a.b.c ##22	ENSGT00940000158477.a.b.c	ENSGT00940000167812.e	ENSGT00940000180774	ENSGT00940000169557	ENSGT01030000234588.b.b.b.b.a.b.a.e.b.a	ENSGT01030000234588.b.b.b.b.a.a.b.d	ENSGT01030000234588.b.b.b.b.a.a.a.f	ENSGT00940000160892.e	ENSGT00390000017767.a.b	ENSGT00940000160974.b.c.g.a	ENSGT00940000157682.B.b.a	ENSGT00950000183052.b.c.b.b.a.a.b.b	ENSGT00550000074844.jb.a	ENSGT00940000155529.A.e	ENSGT00940000159477.c
Oncorhynchus	ANCESTRAL SPECIES	10	ENSGT00390000013286.c	ENSGT00940000165017.a.e	ENSGT01050000244882.a.a.a.a.a.d	ENSGT00390000003450.e	ENSGT00940000164030.i.b	ENSGT00390000001285.j.c	ENSGT00940000154917.fb.a	ENSGT00390000016453.n.a	ENSGT00390000008931.g	ENSGT00390000011262.e.a.b.b	ENSGT00940000165218.b	ENSGT00940000160625.r.a.b	ENSGT00940000157572.a.b.c	ENSGT00940000155997.lb.b.u	ENSGT00920000149457.c	ENSGT00950000182959.b.a.b.c ##22	ENSGT00940000158477.a.b.c	ENSGT00940000167812.e	ENSGT00940000153901.a.b.b.d	ENSGT00940000169557	ENSGT01030000234588.b.b.b.b.a.b.a.e.b.a	ENSGT01030000234588.b.b.b.b.a.a.b.d	ENSGT01030000234588.b.b.b.b.a.a.a.f	ENSGT00940000160892.e	ENSGT00390000017767.a.b	ENSGT00940000160974.b.c.g.a	ENSGT00940000157682.B.b.a	ENSGT00550000074844.jb.a	ENSGT00940000155529.A.e	ENSGT00940000159477.c	ENSGT00590000083094.a.b.l
Rainbow trout	MODERN SPECIES	11	ENSOMYG00000020095	ENSOMYG00000063295	ENSOMYG00000019982	ENSOMYG00000019902	MLKL (ENSOMYG00000019863)	ENSOMYG00000049946	ENSOMYG00000072615	GLG1 (ENSOMYG00000018184)	ENSOMYG00000018085	ENSOMYG00000017972	ENSOMYG00000017932	ENSOMYG00000014514	ENSOMYG00000069921	ENSOMYG00000063995	zgc:172145 (ENSOMYG00000014339)	ENSOMYG00000014328 ##22	ENSOMYG00000014295	TNNT3 (ENSOMYG00000014129)	ENSOMYG00000014110	SYT8 (ENSOMYG00000014086)	ENSOMYG00000046870	drd4a (ENSOMYG00000046859)	ENSOMYG00000059689	ENSOMYG00000046847	ENSOMYG00000046768	ENSOMYG00000072513	ENSOMYG00000062994	PTPRZ1 (ENSOMYG00000046529)	fezf1 (ENSOMYG00000046419)	CADPS2 (ENSOMYG00000043456)	IQUB (ENSOMYG00000042943)
Oncorhynchus_a	ANCESTRAL SPECIES	5	ENSGT00390000013286.c	ENSGT00940000165017.a.e	ENSGT01050000244882.a.a.a.a.a.d	ENSGT00390000003450.e	ENSGT00940000164030.i.b	ENSGT00390000001285.j.c	ENSGT00940000154917.fb.a	ENSGT00390000016453.n.a	ENSGT00390000008931.g	ENSGT00390000011262.e.a.b.b	ENSGT00940000165218.b	ENSGT00940000160625.r.a.b	ENSGT00940000155997.lb.b.u	ENSGT00940000157572.a.b.c	ENSGT00920000149457.c	ENSGT00950000182959.b.a.b.c ##22	ENSGT00940000158477.a.b.c	ENSGT00940000167812.e	ENSGT00940000153901.a.b.b.d	ENSGT00940000169557	ENSGT01030000234588.b.b.b.b.a.b.a.e.b.a	ENSGT01030000234588.b.b.b.b.a.a.b.d	ENSGT01030000234588.b.b.b.b.a.a.a.f	ENSGT00940000160892.e	ENSGT00390000017767.a.b	ENSGT00940000160974.b.c.g.a	ENSGT00940000157682.B.b.a	ENSGT00550000074844.jb.a	ENSGT00940000155529.A.e	ENSGT00940000159477.c	ENSGT00590000083094.a.b.l
Chinook salmon	MODERN SPECIES	10	ppm1h (ENSOTSG00005040718)	AVPR1A (ENSOTSG00005040954)	ENSOTSG00005040958	cnot2 (ENSOTSG00005040964)	ENSOTSG00005040982	nfybb (ENSOTSG00005040983)	ENSOTSG00005040986	MLKL (ENSOTSG00005040987)	RFWD3 (ENSOTSG00005040989)	GLG1 (ENSOTSG00005040997)	ENSOTSG00005041259	ENSOTSG00005041268	CACNA2D4 (ENSOTSG00005041278)	LRTM2 (ENSOTSG00005041564)	zgc:172145 (ENSOTSG00005041565)	MYOD1 (ENSOTSG00005041566) ##22	tnnt3b (ENSOTSG00005041567)	ENSOTSG00005041568	ENSOTSG00005041570	tnni2a.2 (ENSOTSG00005041571)	tnni2a.1 (ENSOTSG00005041572)	SYT8 (ENSOTSG00005041574)	ENSOTSG00005041577	drd4a (ENSOTSG00005041579)	ENSOTSG00005041604	dldh (ENSOTSG00005041612)	PTPRZ1 (ENSOTSG00005041692)	fezf1 (ENSOTSG00005042921)	CADPS2 (ENSOTSG00005042929)	ENSOTSG00005043078	ENSOTSG00005043079
Coho salmon	MODERN SPECIES	14			ENSOKIG00005023196	ENSOKIG00005023221	CNOT2 (ENSOKIG00005023295)	NFYB (ENSOKIG00005023881)	MLKL (ENSOKIG00005023992)	RFWD3 (ENSOKIG00005024030)	GLG1 (ENSOKIG00005024239)	ENSOKIG00005025795	ENSOKIG00005025848	CACNA2D4 (ENSOKIG00005026408)	LRTM2 (ENSOKIG00005026822)	ENSOKIG00005026827	zgc:172145 (ENSOKIG00005026835)	MYOD1 (ENSOKIG00005026839) ##22	TNNT3 (ENSOKIG00005026856)	ENSOKIG00005026885	ENSOKIG00005026905	TNNI2 (ENSOKIG00005026949)	TNNI2 (ENSOKIG00005027031)	tnni2a.2 (ENSOKIG00005027046)	tnni2a.1 (ENSOKIG00005027100)	SYT8 (ENSOKIG00005027132)	ENSOKIG00005027164	drd4a (ENSOKIG00005027194)	ENSOKIG00005027375	dldh (ENSOKIG00005027454)	ENSOKIG00005028191	PTPRZ1 (ENSOKIG00005028335)	ENSOKIG00005031137
Salmo	ANCESTRAL SPECIES	36	ENSGT00940000165017.a.e	ENSGT01050000244882.a.a.a.a.a.d	ENSGT01100000266261	ENSGT00390000003450.e	ENSGT00940000164030.i.b	ENSGT00390000001285.j.c	ENSGT00940000154917.fb.a	ENSGT00390000016453.n.a	ENSGT00390000008931.g	ENSGT00390000011262.e.a.b.b	ENSGT00940000165218.b	ENSGT00940000160625.r.a.b	ENSGT00940000155997.lb.b.u	ENSGT00940000157572.a.b.c	ENSGT00920000149457.c	ENSGT00950000182959.b.a.b.c ##22	ENSGT00940000158477.a.b.c	ENSGT00940000167812.e	ENSGT00940000177178	ENSGT01030000234588.b.b.b.b.a.b.a.e.a.a	ENSGT00940000153901.a.b.b.d	ENSGT01030000234588.b.b.b.b.a.b.a.e.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.a.e.b.a	ENSGT01030000234588.b.b.b.b.a.a.b.d	ENSGT01030000234588.b.b.b.b.a.a.a.f	ENSGT00940000160892.e	ENSGT00390000017767.a.b	ENSGT00940000160974.b.c.g.a	ENSGT00940000157682.B.b.a	ENSGT00950000183052.b.c.b.b.a.a.b.b	ENSGT00550000074844.jb.a
River trout	MODERN SPECIES	37	ppm1h (ENSSTUG00000006225)	AVPR1A (ENSSTUG00000006275)	ENSSTUG00000006288	fnbp4 (ENSSTUG00000006307)	ENSSTUG00000006322	cnot2 (ENSSTUG00000006366)	nfybb (ENSSTUG00000007199)	MLKL (ENSSTUG00000007277)	RFWD3 (ENSSTUG00000007387)	GLG1 (ENSSTUG00000007510)	ENSSTUG00000007769	ENSSTUG00000007788	CACNA2D4 (ENSSTUG00000007981)	ENSSTUG00000008947	zgc:172145 (ENSSTUG00000008972)	MYOD1 (ENSSTUG00000008976) ##22	TNNT3 (ENSSTUG00000008984)	ENSSTUG00000009021	ENSSTUG00000009047	ENSSTUG00000009062	ENSSTUG00000009167	tnni2a.2 (ENSSTUG00000009174)	tnni2a.1 (ENSSTUG00000009183)	SYT8 (ENSSTUG00000009213)	ENSSTUG00000009255	drd4a (ENSSTUG00000009260)	ENSSTUG00000009265	ENSSTUG00000009267	dldh (ENSSTUG00000009461)	fezf1 (ENSSTUG00000010110)	CADPS2 (ENSSTUG00000010148)
Atlantic salmon	MODERN SPECIES	1	ENSSSAG00000111278	ENSSSAG00000094019	ENSSSAG00000005807	ENSSSAG00000119989	ENSSSAG00000005753	mlkl (ENSSSAG00000005722)	MLKL (ENSSSAG00000087130)	ENSSSAG00000122167	GLG1 (ENSSSAG00000067039)	ENSSSAG00000101363	ENSSSAG00000080771	ENSSSAG00000096889	ENSSSAG00000080628	zgc:172145 (ENSSSAG00000080600)	ENSSSAG00000111233	myod1c (ENSSSAG00000080596) ##22	TNNT3 (ENSSSAG00000080578)	ENSSSAG00000102688	ENSSSAG00000080568	ENSSSAG00000110670	TNNI2 (ENSSSAG00000080558)	TNNI2 (ENSSSAG00000115245)	tnni2a.2 (ENSSSAG00000080555)	tnni2a.1 (ENSSSAG00000080550)	SYT8 (ENSSSAG00000055269)	ENSSSAG00000080545	drd4a (ENSSSAG00000080543)	ENSSSAG00000080540	ENSSSAG00000112377	ENSSSAG00000080505	ptprz1 (ENSSSAG00000080236)
Huchen	MODERN SPECIES	544									RFWD3 (ENSHHUG00000050492)	GLG1 (ENSHHUG00000050506)	ENSHHUG00000050630	ENSHHUG00000050634	CACNA2D4 (ENSHHUG00000050645)	LRTM2 (ENSHHUG00000050722)	zgc:172145 (ENSHHUG00000000023)	MYOD1 (ENSHHUG00000000050) ##22	tnnt3b (ENSHHUG00000000132)	ENSHHUG00000000144	ENSHHUG00000000161	TNNI2 (ENSHHUG00000000165)	TNNI2 (ENSHHUG00000000259)	tnni2a.2 (ENSHHUG00000000268)	tnni2a.2 (ENSHHUG00000000284)	tnni2a.1 (ENSHHUG00000000288)	ENSHHUG00000000310
Salmoninae	ANCESTRAL SPECIES	489	ENSGT00940000164030.i.a	ENSGT00390000001285.j.d	ENSGT00390000002524	ENSGT00950000183042.a.b.b	ENSGT00940000154917.fb.b	ENSGT00730000111305	ENSGT00940000163501	ENSGT00390000016453.m	ENSGT00390000008931.h	ENSGT00390000011262.e.a.b.a	ENSGT00940000153229.A.a.a.a.p	ENSGT00940000160625.r.a.a	ENSGT00940000157572.a.b.d	ENSGT00940000155997.lb.b.v	ENSGT00920000149457.d	ENSGT00950000182959.b.a.b.d ##22	ENSGT00940000158477.a.b.d	ENSGT00940000167812.f	ENSGT00940000153901.a.b.b.c	ENSGT01030000234990
Salmoninae_a	ANCESTRAL SPECIES	9	ENSGT00940000164030.i.a	ENSGT00390000001285.j.d	ENSGT00390000002524	ENSGT00950000183042.a.b.b	ENSGT00940000154917.fb.b	ENSGT00730000111305	ENSGT00940000163501	ENSGT00390000016453.m	ENSGT00390000008931.h	ENSGT00390000011262.e.a.b.a	ENSGT00940000153229.A.a.a.a.p	ENSGT00940000160625.r.a.a	ENSGT00940000157572.a.b.d	ENSGT00940000155997.lb.b.v	ENSGT00920000149457.d	ENSGT00950000182959.b.a.b.d ##22	ENSGT00940000158477.a.b.d	ENSGT00940000167812.f	ENSGT00940000153901.a.b.b.c	ENSGT00940000177178	ENSGT01030000234588.b.b.b.b.a.b.a.e.a.a	ENSGT00940000153901.a.b.b.d	ENSGT01030000234588.b.b.b.b.a.b.a.e.a.b	ENSGT01030000234588.b.b.b.b.a.a.b.c	ENSGT01030000234588.b.b.b.b.a.a.a.e	ENSGT00940000160892.f	ENSGT00940000155733.a.a	ENSGT00940000162463	ENSGT00940000160974.b.d	ENSGT00940000164955.b	ENSGT00940000160974.b.c.g.b
Salmo	ANCESTRAL SPECIES	20	ENSGT00390000003450.f	ENSGT00940000164030.i.a	ENSGT00390000001285.j.d	ENSGT00390000002524	ENSGT00950000183042.a.b.b	ENSGT00940000154917.fb.b	ENSGT00730000111305	ENSGT00940000163501	ENSGT00390000016453.m	ENSGT00390000008931.h	ENSGT00390000011262.e.a.b.a	ENSGT00940000160625.r.a.a	ENSGT00940000157572.a.b.d	ENSGT00940000155997.lb.b.v	ENSGT00920000149457.d	ENSGT00950000182959.b.a.b.d ##22	ENSGT00940000158477.a.b.d	ENSGT00940000167812.f	ENSGT00940000153901.a.b.b.c	ENSGT01030000234588.b.b.b.b.a.b.a.e.a.b.b	ENSGT01030000234588.b.b.b.b.a.a.b.c	ENSGT01030000234588.b.b.b.b.a.a.a.e	ENSGT00940000160892.f	ENSGT00940000155733.a.a	ENSGT00940000164955.b	ENSGT00940000160974.b.c.g.b	ENSGT00940000159701	ENSGT00940000160208	ENSGT00940000163706	ENSGT00940000157682.B.b.b	ENSGT00550000074844.jb.b
Atlantic salmon	MODERN SPECIES	15	nfyb (ENSSSAG00000066981)	ENSSSAG00000084218	ENSSSAG00000092247	ENSSSAG00000110890	amn1 (ENSSSAG00000067002)	etfbkmt (ENSSSAG00000103483)	MLKL (ENSSSAG00000067010)	ENSSSAG00000088259	GLG1 (ENSSSAG00000004048)	ENSSSAG00000115733	ENSSSAG00000052259	ENSSSAG00000054630	ENSSSAG00000092025	zgc:172145 (ENSSSAG00000055098)	ENSSSAG00000007878	myod2 (ENSSSAG00000055102) ##22	TNNT3 (ENSSSAG00000055126)	ENSSSAG00000100003	ENSSSAG00000055179	ENSSSAG00000055171	TNNI2 (ENSSSAG00000055203)	ENSSSAG00000103611	tnni2a.1 (ENSSSAG00000055259)	SYT8 (ENSSSAG00000119353)	ENSSSAG00000055272	ENSSSAG00000055278	ENSSSAG00000122200	drd4a (ENSSSAG00000055298)	deaf1 (ENSSSAG00000055310)	ENSSSAG00000055330	ENSSSAG00000055331
River trout	MODERN SPECIES	33	ENSSTUG00000012494	ENSSTUG00000012523	ENSSTUG00000012536	amn1 (ENSSTUG00000012549)	etfbkmt (ENSSTUG00000012566)	MLKL (ENSSTUG00000012572)	RFWD3 (ENSSTUG00000012610)	GLG1 (ENSSTUG00000012698)	ENSSTUG00000013296	urahb (ENSSTUG00000013349)	ENSSTUG00000013806	ENSSTUG00000015707	LRTM2 (ENSSTUG00000016977)	ENSSTUG00000016981	zgc:172145 (ENSSTUG00000016985)	MYOD1 (ENSSTUG00000016988) ##22	tnnt3b (ENSSTUG00000016997)	ENSSTUG00000017023	ENSSTUG00000017036	tnni2a.2 (ENSSTUG00000017106)	tnni2a.1 (ENSSTUG00000017118)	SYT8 (ENSSTUG00000017135)	ENSSTUG00000017149	ENSSTUG00000017421	drd4a (ENSSTUG00000017447)	deaf1 (ENSSTUG00000017459)	BET1L (ENSSTUG00000017470)	ticam1 (ENSSTUG00000017476)	ENSSTUG00000017480	ENSSTUG00000017492	dldh (ENSSTUG00000017505)
Oncorhynchus	ANCESTRAL SPECIES	51	ENSGT00940000164030.i.a	ENSGT00390000001285.j.d	ENSGT00390000002524	ENSGT00950000183042.a.b.b	ENSGT00940000154917.fb.b	ENSGT00730000111305	ENSGT00940000163501	ENSGT00390000016453.m	ENSGT00390000008931.h	ENSGT00390000011262.e.a.b.a	ENSGT00940000153229.A.a.a.a.p	ENSGT00940000160625.r.a.a	ENSGT00940000157572.a.b.d	ENSGT00940000155997.lb.b.v	ENSGT00920000149457.d	ENSGT00950000182959.b.a.b.d ##22	ENSGT00940000158477.a.b.d	ENSGT00940000167812.f	ENSGT00940000153901.a.b.b.c	ENSGT01030000234588.b.b.b.b.a.b.a.e.a.b	ENSGT01030000234588.b.b.b.b.a.a.a.e	ENSGT01030000234588.b.b.b.b.a.b.a.e.b.b	ENSGT01030000234588.b.b.b.b.a.a.b.c	ENSGT00940000160892.f	ENSGT00940000155733.a.a	ENSGT00940000162463	ENSGT00940000160974.b.d	ENSGT00940000164955.b	ENSGT00940000160974.b.c.g.b	ENSGT00940000159701	ENSGT00940000160208
Rainbow trout	MODERN SPECIES	22	ENSOMYG00000048775	amn1 (ENSOMYG00000045459)	ENSOMYG00000055885	etfbkmt (ENSOMYG00000045453)	MLKL (ENSOMYG00000045444)	ENSOMYG00000045422	GLG1 (ENSOMYG00000045338)	ENSOMYG00000073315	ENSOMYG00000069462	urahb (ENSOMYG00000045245)	ENSOMYG00000044518	ENSOMYG00000054081	ENSOMYG00000044396	ENSOMYG00000064959	zgc:172145 (ENSOMYG00000068802)	myod2 (ENSOMYG00000044372) ##22	TNNT3 (ENSOMYG00000044367)	ENSOMYG00000044366	ENSOMYG00000054158	ENSOMYG00000051621	tnni2a.1 (ENSOMYG00000044342)	SYT8 (ENSOMYG00000044334)	ENSOMYG00000070342	ENSOMYG00000044289	ENSOMYG00000044274	drd4a (ENSOMYG00000044265)	deaf1 (ENSOMYG00000044258)	bet1l (ENSOMYG00000071324)	ENSOMYG00000051072	ENSOMYG00000044242	ENSOMYG00000053913
Oncorhynchus_a	ANCESTRAL SPECIES	36	ENSGT00940000164030.i.a	ENSGT00390000001285.j.d	ENSGT00390000002524	ENSGT00950000183042.a.b.b	ENSGT00940000154917.fb.b	ENSGT00730000111305	ENSGT00940000163501	ENSGT00390000016453.m	ENSGT00390000008931.h	ENSGT00390000011262.e.a.b.a	ENSGT00940000153229.A.a.a.a.p	ENSGT00940000160625.r.a.a	ENSGT00940000157572.a.b.d	ENSGT00940000155997.lb.b.v	ENSGT00920000149457.d	ENSGT00950000182959.b.a.b.d ##22	ENSGT00940000158477.a.b.d	ENSGT00940000167812.f	ENSGT00940000153901.a.b.b.c	ENSGT01030000234588.b.b.b.b.a.b.a.e.a.b	ENSGT01030000234588.b.b.b.b.a.a.a.e	ENSGT01030000234588.b.b.b.b.a.b.a.e.b.b	ENSGT01030000234588.b.b.b.b.a.a.b.c	ENSGT00940000160892.f	ENSGT00940000155733.a.a	ENSGT00940000162463	ENSGT00940000160974.b.d	ENSGT00940000164955.b	ENSGT00940000160974.b.c.g.b	ENSGT00940000159701	ENSGT00940000160208
Coho salmon	MODERN SPECIES	1	cnot2 (ENSOKIG00005039255)	WASHC4 (ENSOKIG00005038852)	ENSOKIG00005038712	ENSOKIG00005038688	nfybb (ENSOKIG00005038602)	amn1 (ENSOKIG00005038546)	etfbkmt (ENSOKIG00005038535)	MLKL (ENSOKIG00005038521)	RFWD3 (ENSOKIG00005038361)	GLG1 (ENSOKIG00005034363)	urahb (ENSOKIG00005034114)	ENSOKIG00005034065	LRTM2 (ENSOKIG00005034035)	CACNA2D4 (ENSOKIG00005033316)	zgc:172145 (ENSOKIG00005033256)	MYOD1 (ENSOKIG00005033239) ##22	tnnt3b (ENSOKIG00005033212)	ENSOKIG00005033174	ENSOKIG00005033145	tnni2a.2 (ENSOKIG00005033122)	tnni2a.1 (ENSOKIG00005033031)	SYT8 (ENSOKIG00005033015)	ENSOKIG00005033002	ENSOKIG00005032992	ENSOKIG00005032986	ENSOKIG00005032958	drd4a (ENSOKIG00005032941)	deaf1 (ENSOKIG00005032919)	BET1L (ENSOKIG00005032895)	ticam1 (ENSOKIG00005032764)	ENSOKIG00005032730
Chinook salmon	MODERN SPECIES		cnot2 (ENSOTSG00005014745)	WASHC4 (ENSOTSG00005014735)	ENSOTSG00005014596	nfybb (ENSOTSG00005014590)	ENSOTSG00005014589	amn1 (ENSOTSG00005014587)	etfbkmt (ENSOTSG00005014586)	MLKL (ENSOTSG00005014585)	RFWD3 (ENSOTSG00005014583)	GLG1 (ENSOTSG00005012421)	urahb (ENSOTSG00005012417)	ENSOTSG00005009504	LRTM2 (ENSOTSG00005009493)	CACNA2D4 (ENSOTSG00005009358)	zgc:172145 (ENSOTSG00005009354)	MYOD1 (ENSOTSG00005009353) ##22	ENSOTSG00005009351	ENSOTSG00005009349	TNNI2 (ENSOTSG00005009348)	tnni2a.2 (ENSOTSG00005009347)	ENSOTSG00005009344	ENSOTSG00005009337	ENSOTSG00005009336	ENSOTSG00005009327	drd4a (ENSOTSG00005009324)	deaf1 (ENSOTSG00005009322)	BET1L (ENSOTSG00005009320)	ticam1 (ENSOTSG00005009318)	ENSOTSG00005009316	ENSOTSG00005009315	dldh (ENSOTSG00005008481)
Huchen	MODERN SPECIES	889				ENSHHUG00000027457	amn1 (ENSHHUG00000027459)	etfbkmt (ENSHHUG00000027465)	ENSHHUG00000027468	RFWD3 (ENSHHUG00000027472)	GLG1 (ENSHHUG00000027478)	urahb (ENSHHUG00000027499)	ENSHHUG00000027507	ENSHHUG00000027513	ENSHHUG00000027515	LRTM2 (ENSHHUG00000027521)	CACNA2D4 (ENSHHUG00000027532)	MYOD1 (ENSHHUG00000027540) ##22	TNNT3 (ENSHHUG00000027549)	ENSHHUG00000027560	ENSHHUG00000027566	TNNI2 (ENSHHUG00000027573)	TNNI2 (ENSHHUG00000027633)	tnni2a.2 (ENSHHUG00000027724)	tnni2a.1 (ENSHHUG00000027733)	ENSHHUG00000027744	SYT8 (ENSHHUG00000027747)	ENSHHUG00000027755	ENSHHUG00000028029
Northern pike	MODERN SPECIES	18	cnot2 (ENSELUG00000007279)	WASHC4 (ENSELUG00000000264)	ENSELUG00000007161	nfybb (ENSELUG00000007138)	amn1 (ENSELUG00000007098)	etfbkmt (ENSELUG00000007086)	MLKL (ENSELUG00000007058)	RFWD3 (ENSELUG00000007033)	GLG1 (ENSELUG00000006991)	ENSELUG00000006933	urahb (ENSELUG00000034591)	ENSELUG00000006919	CACNA2D4 (ENSELUG00000006851)	LRTM2 (ENSELUG00000006756)	zgc:172145 (ENSELUG00000028291)	MYOD1 (ENSELUG00000006737) ##22	tnnt3b (ENSELUG00000006673)	ENSELUG00000006610	ENSELUG00000024853	ENSELUG00000006582	TNNI2 (ENSELUG00000006514)	TNNI2 (ENSELUG00000006429)	tnni2a.2 (ENSELUG00000006408)	ENSELUG00000006355	SYT8 (ENSELUG00000006343)	ENSELUG00000006319	ENSELUG00000006280	ENSELUG00000000195	drd4a (ENSELUG00000006156)	deaf1 (ENSELUG00000006122)	BET1L (ENSELUG00000032203)
Osteoglossiformes	ANCESTRAL SPECIES	107				ENSGT00960000187709	ENSGT00950000182839.B.b.a ##33	ENSGT00940000155653.b.b	ENSGT00940000153903.a.b.a	ENSGT00940000153201.g	ENSGT00940000157462.C.c.a.b	ENSGT00940000157661.e.b	ENSGT01050000244857.A.a.b.c	ENSGT00940000161238.n	ENSGT00440000039564.a.b.b	ENSGT00940000160333	ENSGT00940000159916.c	ENSGT00950000182959.b.a.b ##22	ENSGT00940000158477.a.b	ENSGT00940000153901.a.b.a	ENSGT00940000167812.b	ENSGT00940000160974.b.a	ENSGT00940000160208	ENSGT00390000014700.b.a.a.d	ENSGT00390000009899.a.d.q	ENSGT00940000156574.C.m	ENSGT00940000156431.d	ENSGT00390000017249.e	ENSGT00940000158481.c	ENSGT00940000157667.c	ENSGT00940000156620	ENSGT00940000159662.a	ENSGT00940000153438.a.u
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	12	ENSPKIG00000013662	BRSK2 (ENSPKIG00000013692)	ABTB2 (ENSPKIG00000013765)	B4GALNT4 (ENSPKIG00000013857)	ENSPKIG00000013906	ENSPKIG00000013936	NAP1L4 (ENSPKIG00000013990)	phlda2 (ENSPKIG00000014074)	slc22a18 (ENSPKIG00000014108)	OSBPL5 (ENSPKIG00000014169)	ENSPKIG00000014210	ENSPKIG00000014235	PTPN5 (ENSPKIG00000014280)	DUSP8 (ENSPKIG00000014327)	MOB2 (ENSPKIG00000014366)	MYOD1 (ENSPKIG00000014431) ##22	tnnt3a (ENSPKIG00000014475)	ENSPKIG00000014525	ENSPKIG00000014539	ENSPKIG00000014558	ctsd (ENSPKIG00000014578)	DRD4 (ENSPKIG00000014609)	BET1L (ENSPKIG00000014630)	ric8a (ENSPKIG00000014659)	PPP6R3 (ENSPKIG00000014718)	lrp5 (ENSPKIG00000014824)	KMT5B (ENSPKIG00000014929)	TP53I11 (ENSPKIG00000014988)	cd82b (ENSPKIG00000015005)	TSPAN18 (ENSPKIG00000015030)	ext2 (ENSPKIG00000015088)
P. kingsleyae	MODERN SPECIES	38	ENSPKIG00000001158	CPT1A (ENSPKIG00000001242)	cars1 (ENSPKIG00000001391)	nap1l4b (ENSPKIG00000001515)	phlda2 (ENSPKIG00000001555)	OSBPL5 (ENSPKIG00000001623)	ENSPKIG00000001750	PTPN5 (ENSPKIG00000001814)	dusp8a (ENSPKIG00000001877)	MOB2 (ENSPKIG00000001948)	kcnj11 (ENSPKIG00000001997)	abcc8 (ENSPKIG00000002041)	ush1c (ENSPKIG00000002131)	OTOG (ENSPKIG00000002227)	zgc:172145 (ENSPKIG00000002339)	MYOD1 (ENSPKIG00000002354) ##22	TNNT3 (ENSPKIG00000002402)	ENSPKIG00000002481	ENSPKIG00000002526	ENSPKIG00000002535	TNNI2 (ENSPKIG00000002556)	TNNI2 (ENSPKIG00000002585)	tnni2a.2 (ENSPKIG00000002613)	TNNI2 (ENSPKIG00000002626)	SYT8 (ENSPKIG00000002642)	ENSPKIG00000002661	ctsd (ENSPKIG00000002678)	ENSPKIG00000002707	DRD4 (ENSPKIG00000002751)	deaf1 (ENSPKIG00000002796)	ric8a (ENSPKIG00000002880)
Spotted gar	MODERN SPECIES	666	mrpl23 (ENSLOCG00000001825)	th (ENSLOCG00000001834)	ENSLOCG00000001862	uevld (ENSLOCG00000001881)	spty2d1 (ENSLOCG00000001901)	tmem86a (ENSLOCG00000001930)	IGSF22 (ENSLOCG00000001945)	B4GALNT4 (ENSLOCG00000001959)	ABTB2 (ENSLOCG00000001988)	kcnj11 (ENSLOCG00000002016)	abcc8 (ENSLOCG00000002032)	ush1c (ENSLOCG00000002073)	OTOG (ENSLOCG00000002110)	ENSLOCG00000002142 ##22	zgc:172145 (ENSLOCG00000002153)	MYOD1 (ENSLOCG00000002164) ##22	tnnt3a (ENSLOCG00000002181)	ENSLOCG00000002207	ENSLOCG00000017320	tnni2a.4 (ENSLOCG00000002237)	SYT8 (ENSLOCG00000002263)	ENSLOCG00000002283	ctsd (ENSLOCG00000002297)	ENSLOCG00000002337	drd4a (ENSLOCG00000002345)	deaf1 (ENSLOCG00000002360)	BET1L (ENSLOCG00000002376)	ric8a (ENSLOCG00000002406)	sirt3 (ENSLOCG00000002426)	psmd13 (ENSLOCG00000002439)	zgc:110339 (ENSLOCG00000002463)
Reedfish	MODERN SPECIES	10	INSC (ENSECRG00000003699)	ENSECRG00000003710	SOX6 (ENSECRG00000003717)	C11orf58 (ENSECRG00000003724)	PLEKHA7 (ENSECRG00000003752)	rps13 (ENSECRG00000003804)	PIK3C2A (ENSECRG00000003812)	nucb2b (ENSECRG00000003824)	si:dkey-10o6.2 (ENSECRG00000003829)	ENSECRG00000003833	ENSECRG00000003836	ENSECRG00000003840	kcnj11 (ENSECRG00000003846)	abcc8 (ENSECRG00000003935)	ush1c (ENSECRG00000000542)	MYOD1 (ENSECRG00000000567) ##22	tnnt3a (ENSECRG00000000597)	ENSECRG00000000626	ENSECRG00000000643	tnni2a.4 (ENSECRG00000000665)	ENSECRG00000000682	SYT8 (ENSECRG00000000689)	ctsd (ENSECRG00000000723)	drd4a (ENSECRG00000000794)	deaf1 (ENSECRG00000000848)	BET1L (ENSECRG00000000891)	ric8a (ENSECRG00000000914)	sirt3 (ENSECRG00000000947)	psmd13 (ENSECRG00000000984)	ENSECRG00000001018	ENSECRG00000001031
Sarcopterygii	ANCESTRAL SPECIES	21	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT01030000235062	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00950000182959.b.a.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a	ENSGT00940000155818	ENSGT00390000015066
Coelacanth	MODERN SPECIES	288	SOX6 (ENSLACG00000017676)	C11orf58 (ENSLACG00000017536)	PLEKHA7 (ENSLACG00000017451)	rps13 (ENSLACG00000017174)	PIK3C2A (ENSLACG00000017040)	rps13 (ENSLACG00000017012)	NUCB2 (ENSLACG00000016943)	ENSLACG00000016883	ENSLACG00000016827	KCNJ11 (ENSLACG00000016707)	ABCC8 (ENSLACG00000016365)	USH1C (ENSLACG00000016027)	OTOG (ENSLACG00000015455)	ENSLACG00000014612 ##22	zgc:172145 (ENSLACG00000014515)	MYOD1 (ENSLACG00000014430) ##22	KCNC1 (ENSLACG00000013857)	SERGEF (ENSLACG00000012618)	TPH1 (ENSLACG00000012424)	SAAL1 (ENSLACG00000011733)	HPS5 (ENSLACG00000011372)	GTF2H1 (ENSLACG00000011123)	LDHA (ENSLACG00000010504)	TSG101 (ENSLACG00000010221)	ENSLACG00000009769	SPTY2D1 (ENSLACG00000009475)	TMEM86A (ENSLACG00000008872)	IGSF22 (ENSLACG00000008077)	PTPN5 (ENSLACG00000007406)
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00950000182959.b.a.b ##22
Anura	ANCESTRAL SPECIES																	ENSGT00950000182959.b.a.b ##22
Leishan spiny toad	MODERN SPECIES	1	PRMT3 (ENSLLEG00000015222)	SLC6A5 (ENSLLEG00000014934)	NELL1 (ENSLLEG00000013886)	ANO5 (ENSLLEG00000012984)	ENSLLEG00000012910	SLC17A6 (ENSLLEG00000012588)	ENSLLEG00000012539	GAS2 (ENSLLEG00000012505)	ENSLLEG00000012464	NDUFB7 (ENSLLEG00000012433)	ENSLLEG00000012269	KCNJ11 (ENSLLEG00000012239)	ABCC8 (ENSLLEG00000011143)	ENSLLEG00000010952	ENSLLEG00000010818	MYOD1 (ENSLLEG00000010740) ##22	ENSLLEG00000010621	SERGEF (ENSLLEG00000010129)	TPH1 (ENSLLEG00000009964)	SAAL1 (ENSLLEG00000009836)	ENSLLEG00000009816	HPS5 (ENSLLEG00000009676)	GTF2H1 (ENSLLEG00000009515)	LDHA (ENSLLEG00000009417)	ENSLLEG00000009178	ENSLLEG00000008744	SPTY2D1 (ENSLLEG00000030067)	ENSLLEG00000030060	ENSLLEG00000030053	TMEM86A (ENSLLEG00000030039)	ENSLLEG00000030032
Euteleostomi	ANCESTRAL SPECIES	19	ENSGT00940000156433.B	ENSGT01030000235062	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00940000154404.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00530000064489	ENSGT01060000250538	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000170563
Sarcopterygii	ANCESTRAL SPECIES	21	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT01030000235062	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00950000182959.b.a.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a	ENSGT00940000155818	ENSGT00390000015066
Tetrapoda	ANCESTRAL SPECIES	9	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT01030000235062	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123	ENSGT00940000159916	ENSGT00940000156870
Anura	ANCESTRAL SPECIES	163											ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201	ENSGT00940000153903.a.a	ENSGT00940000154133.A	ENSGT00940000153903.a.b.b	ENSGT00940000164956	ENSGT00390000007101.d.b	ENSGT00940000159916	ENSGT00390000006347.a	ENSGT00940000153362.b
Frog	MODERN SPECIES	4	ENSXETG00000040706	PTPN5 (ENSXETG00000042778)	ENSXETG00000041841	ENSXETG00000047729	ENSXETG00000044019	ENSXETG00000047278	spty2d1 (ENSXETG00000043007)	uevld (ENSXETG00000008509)	ldha (ENSXETG00000041431)	tsg101 (ENSXETG00000046442)	ush1c (ENSXETG00000043793)	ENSXETG00000048951	ENSXETG00000044994	ENSXETG00000049215	OTOG (ENSXETG00000048795)	MYOD1 (ENSXETG00000046866) ##22	kcnc1 (ENSXETG00000014391)	sergef (ENSXETG00000014410)	ENSXETG00000042377	ENSXETG00000048806	saal1 (ENSXETG00000018990)	gtf2h1 (ENSXETG00000018992)	abcc8 (ENSXETG00000046120)	ENSXETG00000046872	ENSXETG00000045579	XB995201 [provisional] (ENSXETG00000022477)	ENSXETG00000041634	ENSXETG00000037097	ENSXETG00000047592	ENSXETG00000042912	XB5846708 [provisional] (ENSXETG00000035870)
Amniota	ANCESTRAL SPECIES	20	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT01030000235062	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000175801	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123	ENSGT00940000159916
Sauria	ANCESTRAL SPECIES	3	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000175801.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00980000200162	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123
Lepidosauria	ANCESTRAL SPECIES	10	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000175801.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00980000200162	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000164956	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123	ENSGT00940000159916
Episquamata	ANCESTRAL SPECIES		ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000175801.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00980000200162	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123	ENSGT00940000159916	ENSGT00940000156870
Toxicofera	ANCESTRAL SPECIES	5	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000175801.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00980000200162	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123	ENSGT00940000159916	ENSGT00940000156870	ENSGT00940000159535
Elapidae	ANCESTRAL SPECIES	3	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813.e	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00980000200162	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123	ENSGT00940000159916	ENSGT00940000156870	ENSGT00940000159535
Elapidae_a	ANCESTRAL SPECIES	29	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813.e	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626.f	ENSGT00980000200162	ENSGT00940000156626.e	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123	ENSGT00940000159916	ENSGT00940000156870	ENSGT00940000159535
Acanthophiinae	ANCESTRAL SPECIES	29	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813.e	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626.f	ENSGT00980000200162	ENSGT00940000156626.e	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123	ENSGT00940000159916	ENSGT00940000156870	ENSGT00940000159535
Mainland tiger snake	MODERN SPECIES	22	PDE3B (ENSNSUG00000018425)	CYP2R1 (ENSNSUG00000018424)	INSC (ENSNSUG00000018421)	SOX6 (ENSNSUG00000018420)	C11orf58 (ENSNSUG00000018419)	PLEKHA7 (ENSNSUG00000018214)	RPS13 (ENSNSUG00000018197)	ENSNSUG00000018194	ENSNSUG00000018193	NUCB2 (ENSNSUG00000018192)	ENSNSUG00000018191	KCNJ11 (ENSNSUG00000018189)	ABCC8 (ENSNSUG00000018128)	USH1C (ENSNSUG00000018127)	OTOG (ENSNSUG00000018126)	MYOD1 (ENSNSUG00000018125) ##22	KCNC1 (ENSNSUG00000018123)	SERGEF (ENSNSUG00000018122)	TPH1 (ENSNSUG00000018121)	SAAL1 (ENSNSUG00000018114)	ENSNSUG00000018113	ENSNSUG00000018112	ENSNSUG00000018111	LDHA (ENSNSUG00000018110)	TSG101 (ENSNSUG00000018109)	ENSNSUG00000018106	SPTY2D1 (ENSNSUG00000018105)	TMEM86A (ENSNSUG00000018086)	PTPN5 (ENSNSUG00000018080)	PTPRJ (ENSNSUG00000018065)	OSBPL5 (ENSNSUG00000018055)
Eastern brown snake	MODERN SPECIES	32	CYP2R1 (ENSPTXG00000000493)	CALCB (ENSPTXG00000000580)	INSC (ENSPTXG00000000590)	SOX6 (ENSPTXG00000000601)	C11orf58 (ENSPTXG00000000613)	PLEKHA7 (ENSPTXG00000000617)	RPS13 (ENSPTXG00000000631)	PIK3C2A (ENSPTXG00000000640)	NUCB2 (ENSPTXG00000000649)	ENSPTXG00000000655	KCNJ11 (ENSPTXG00000000659)	ENSPTXG00000000661	ENSPTXG00000000668	USH1C (ENSPTXG00000000688)	OTOG (ENSPTXG00000000874)	MYOD1 (ENSPTXG00000000885) ##22	KCNC1 (ENSPTXG00000000887)	SERGEF (ENSPTXG00000000888)	TPH1 (ENSPTXG00000000890)	SAAL1 (ENSPTXG00000000891)	HPS5 (ENSPTXG00000000894)	GTF2H1 (ENSPTXG00000000897)	LDHA (ENSPTXG00000000902)	TSG101 (ENSPTXG00000000909)	ENSPTXG00000000912	SPTY2D1 (ENSPTXG00000000916)	TMEM86A (ENSPTXG00000000920)	IGSF22 (ENSPTXG00000000928)	PTPN5 (ENSPTXG00000000933)	PTPRJ (ENSPTXG00000000941)	OSBPL5 (ENSPTXG00000000956)
Indian cobra	MODERN SPECIES		CYP2R1 (ENSNNAG00000000329)	CALCB (ENSNNAG00000016369)	INSC (ENSNNAG00000016333)	ENSNNAG00000016327	SOX6 (ENSNNAG00000016276)	C11orf58 (ENSNNAG00000016255)	PLEKHA7 (ENSNNAG00000016200)	RPS13 (ENSNNAG00000016191)	PIK3C2A (ENSNNAG00000016104)	NUCB2 (ENSNNAG00000016084)	ENSNNAG00000016077	KCNJ11 (ENSNNAG00000016074)	ABCC8 (ENSNNAG00000015317)	USH1C (ENSNNAG00000014394)	OTOG (ENSNNAG00000013913)	MYOD1 (ENSNNAG00000013885) ##22	ENSNNAG00000013869	KCNC1 (ENSNNAG00000013849)	SERGEF (ENSNNAG00000013832)	TPH1 (ENSNNAG00000013808)	SAAL1 (ENSNNAG00000013771)	HPS5 (ENSNNAG00000013337)	GTF2H1 (ENSNNAG00000013205)	LDHA (ENSNNAG00000013178)	TSG101 (ENSNNAG00000013150)	ENSNNAG00000013120	SPTY2D1 (ENSNNAG00000013097)	TMEM86A (ENSNNAG00000013088)	IGSF22 (ENSNNAG00000013035)	PTPN5 (ENSNNAG00000012998)	PTPRJ (ENSNNAG00000012938)
Lizard	MODERN SPECIES		INSC (ENSACAG00000012740)	SOX6 (ENSACAG00000012782)	ENSACAG00000027158	C11orf58 (ENSACAG00000000042)	PLEKHA7 (ENSACAG00000000043)	ENSACAG00000038754	RPS13 (ENSACAG00000000044)	PIK3C2A (ENSACAG00000000045)	NUCB2 (ENSACAG00000000046)	KCNJ11 (ENSACAG00000000047)	ABCC8 (ENSACAG00000000048)	USH1C (ENSACAG00000000051)	OTOG (ENSACAG00000000052)	ENSACAG00000038180	ENSACAG00000037486	MYOD1 (ENSACAG00000039537) ##22	KCNC1 (ENSACAG00000000055)	SERGEF (ENSACAG00000028890)	TPH1 (ENSACAG00000000057)	SAAL1 (ENSACAG00000000058)	HPS5 (ENSACAG00000000059)	GTF2H1 (ENSACAG00000000060)	ENSACAG00000000061	TSG101 (ENSACAG00000000062)	ENSACAG00000000063	ENSACAG00000000064	TMEM86A (ENSACAG00000000065)	ENSACAG00000043092	IGSF22 (ENSACAG00000000066)	PTPN5 (ENSACAG00000000067)	ENSACAG00000040931
Laterata	ANCESTRAL SPECIES	2	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000013383	ENSGT00390000007101.d.b	ENSGT00940000160123	ENSGT00940000159916	ENSGT00940000156870
Common wall lizard	MODERN SPECIES		CALCB (ENSPMRG00000000101)	ENSPMRG00000000108	INSC (ENSPMRG00000000119)	SOX6 (ENSPMRG00000000151)	C11orf58 (ENSPMRG00000000197)	PLEKHA7 (ENSPMRG00000000278)	RPS13 (ENSPMRG00000000463)	PIK3C2A (ENSPMRG00000001137)	NUCB2 (ENSPMRG00000002326)	ENSPMRG00000002342	KCNJ11 (ENSPMRG00000002356)	ABCC8 (ENSPMRG00000002883)	USH1C (ENSPMRG00000005026)	OTOG (ENSPMRG00000005049)	ENSPMRG00000005107	MYOD1 (ENSPMRG00000005112) ##22	KCNC1 (ENSPMRG00000005116)	SERGEF (ENSPMRG00000005122)	TPH1 (ENSPMRG00000005139)	SAAL1 (ENSPMRG00000005195)	HPS5 (ENSPMRG00000005216)	GTF2H1 (ENSPMRG00000005288)	LDHA (ENSPMRG00000005300)	TSG101 (ENSPMRG00000005311)	ENSPMRG00000005321	SPTY2D1 (ENSPMRG00000005330)	C18orf21 (ENSPMRG00000005336)	TMEM86A (ENSPMRG00000005342)	IGSF22 (ENSPMRG00000005349)	PTPN5 (ENSPMRG00000005389)	PTPRJ (ENSPMRG00000005401)
Argentine black and white tegu	MODERN SPECIES	3	SOX6 (ENSSMRG00000014958)	ENSSMRG00000014950	C11orf58 (ENSSMRG00000014949)	PLEKHA7 (ENSSMRG00000014940)	RPS13 (ENSSMRG00000014938)	PIK3C2A (ENSSMRG00000014936)	NUCB2 (ENSSMRG00000014933)	ENSSMRG00000014929	ENSSMRG00000014927	KCNJ11 (ENSSMRG00000014924)	ENSSMRG00000014922	ABCC8 (ENSSMRG00000014918)	USH1C (ENSSMRG00000014516)	OTOG (ENSSMRG00000014503)	ENSSMRG00000014497	MYOD1 (ENSSMRG00000014495) ##22	KCNC1 (ENSSMRG00000014480)	SERGEF (ENSSMRG00000014477)	TPH1 (ENSSMRG00000014476)	SAAL1 (ENSSMRG00000014475)	HPS5 (ENSSMRG00000014207)	GTF2H1 (ENSSMRG00000014206)	LDHA (ENSSMRG00000014205)	TSG101 (ENSSMRG00000014204)	UEVLD (ENSSMRG00000014203)	SPTY2D1 (ENSSMRG00000014202)	ENSSMRG00000014201	TMEM86A (ENSSMRG00000014198)	IGSF22 (ENSSMRG00000014197)	ENSSMRG00000014196	PTPN5 (ENSSMRG00000014194)
tuatara	MODERN SPECIES	351													USH1C (ENSSPUG00000001606)	OTOG (ENSSPUG00000001672)	ENSSPUG00000001764	MYOD1 (ENSSPUG00000001769) ##22	KCNC1 (ENSSPUG00000001801)	SERGEF (ENSSPUG00000001823)	TPH1 (ENSSPUG00000001908)	SAAL1 (ENSSPUG00000001931)
Archelosauria	ANCESTRAL SPECIES	2	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00980000200162	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123
Cryptodira	ANCESTRAL SPECIES	3	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00980000200162	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123	ENSGT00940000159916	ENSGT00940000156870
Testudinoidea	ANCESTRAL SPECIES	3	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e.g.a	ENSGT00940000163348.e.g.b	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626.d	ENSGT00980000200162	ENSGT00940000156626.c	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b.fb.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123	ENSGT00940000159916	ENSGT00940000156870
Emydidae	ANCESTRAL SPECIES	10	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e.g.a	ENSGT00940000163348.e.g.b	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626.c	ENSGT00940000156626.d	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b.fb.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123	ENSGT00940000159916	ENSGT00940000156870
Three-toed box turtle	MODERN SPECIES	346											ENSTMTG00000022696	ENSTMTG00000022812	USH1C (ENSTMTG00000022976)	OTOG (ENSTMTG00000022982)	ENSTMTG00000022987	MYOD1 (ENSTMTG00000022988) ##22	KCNC1 (ENSTMTG00000022989)	SERGEF (ENSTMTG00000022991)	TPH1 (ENSTMTG00000022992)	SAAL1 (ENSTMTG00000022994)	HPS5 (ENSTMTG00000023014)	GTF2H1 (ENSTMTG00000023035)	LDHA (ENSTMTG00000023037)	TSG101 (ENSTMTG00000023038)	ENSTMTG00000023039	SPTY2D1 (ENSTMTG00000023041)	TMEM86A (ENSTMTG00000023043)	IGSF22 (ENSTMTG00000023046)	PTPN5 (ENSTMTG00000003391)	OSBPL5 (ENSTMTG00000003425)	ENSTMTG00000003489
painted turtle	MODERN SPECIES	883					C11orf58 (ENSCPBG00000017624)	PLEKHA7 (ENSCPBG00000017618)	RPS13 (ENSCPBG00000017607)	PIK3C2A (ENSCPBG00000017597)	ENSCPBG00000017590	ENSCPBG00000017587	KCNJ11 (ENSCPBG00000017586)	ABCC8 (ENSCPBG00000017576)	USH1C (ENSCPBG00000017570)	OTOG (ENSCPBG00000017566)	ENSCPBG00000017562	MYOD1 (ENSCPBG00000017560) ##22	KCNC1 (ENSCPBG00000017557)	SERGEF (ENSCPBG00000017555)	TPH1 (ENSCPBG00000017553)
Testudinidae	ANCESTRAL SPECIES	2	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e.g.a	ENSGT00940000163348.e.g.b	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626.d	ENSGT00980000200162	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b.gb	ENSGT00390000004737.b.a.o.a.a.a.b.fb.b.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT01000000216403	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123
Goode s thornscrub tortoise	MODERN SPECIES	18	CALCB (ENSGEVG00005008406)	INSC (ENSGEVG00005008452)	SOX6 (ENSGEVG00005008506)	C11orf58 (ENSGEVG00005008546)	PLEKHA7 (ENSGEVG00005008609)	RPS13 (ENSGEVG00005008637)	PIK3C2A (ENSGEVG00005008680)	NUCB2 (ENSGEVG00005008771)	ENSGEVG00005008800	KCNJ11 (ENSGEVG00005008823)	ABCC8 (ENSGEVG00005008865)	ENSGEVG00005009104	USH1C (ENSGEVG00005009326)	OTOG (ENSGEVG00005010473)	ENSGEVG00005010902	MYOD1 (ENSGEVG00005010944) ##22	KCNC1 (ENSGEVG00005010986)	SERGEF (ENSGEVG00005011075)	TPH1 (ENSGEVG00005011260)	SAAL1 (ENSGEVG00005011345)	ENSGEVG00005011365	ENSGEVG00005011403	ENSGEVG00005011487	ENSGEVG00005011723	ENSGEVG00005011786	GTF2H1 (ENSGEVG00005011817)	LDHA (ENSGEVG00005011863)	TSG101 (ENSGEVG00005011900)	ENSGEVG00005011961	TMEM86A (ENSGEVG00005012053)	IGSF22 (ENSGEVG00005012213)
Abingdon island giant tortoise	MODERN SPECIES	167															ENSCABG00000015905	MYOD1 (ENSCABG00000015907) ##22	KCNC1 (ENSCABG00000015909)	ENSCABG00000015916	TPH1 (ENSCABG00000015920)	SAAL1 (ENSCABG00000015932)
Archosauria	ANCESTRAL SPECIES	5	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123	ENSGT00940000159916	ENSGT00940000156870
Aves	ANCESTRAL SPECIES	2	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000159916	ENSGT00940000156870	ENSGT00940000159535
Neognathae	ANCESTRAL SPECIES	4	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000159916	ENSGT00940000156870	ENSGT00940000159535
Galloanserae	ANCESTRAL SPECIES	4	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000159916	ENSGT00940000156870
Anatidae	ANCESTRAL SPECIES	33	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a.b	ENSGT00940000153962.a	ENSGT01050000244951.a.b.a.a	ENSGT00940000160055	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b	ENSGT00940000155960.b	ENSGT00390000006758.b	ENSGT00940000157402	ENSGT00950000182976.a.b	ENSGT00440000037417.A
Pink-footed goose	MODERN SPECIES	33	CYP2R1 (ENSABRG00000013865)	CALCB (ENSABRG00000013884)	INSC (ENSABRG00000013914)	ENSABRG00000013975	SOX6 (ENSABRG00000013981)	C11orf58 (ENSABRG00000013996)	PLEKHA7 (ENSABRG00000014016)	RPS13 (ENSABRG00000014031)	PIK3C2A (ENSABRG00000014041)	NUCB2 (ENSABRG00000014061)	KCNJ11 (ENSABRG00000014070)	ABCC8 (ENSABRG00000014379)	USH1C (ENSABRG00000017259)	OTOG (ENSABRG00000017284)	ENSABRG00000017331	MYOD1 (ENSABRG00000017333) ##22	KCNC1 (ENSABRG00000017337)	SERGEF (ENSABRG00000017340)	ENSABRG00000017358	CYB5R2 (ENSABRG00000017412)	PPFIBP2 (ENSABRG00000017439)	OLFML1 (ENSABRG00000017498)	SYT9 (ENSABRG00000017501)	SPON1 (ENSABRG00000017512)	ENSABRG00000017553	KIAA1549L (ENSABRG00000017560)	HIPK3 (ENSABRG00000017587)	CSTF3 (ENSABRG00000017719)	TCP11L1 (ENSABRG00000017828)	DEPDC7 (ENSABRG00000017835)	QSER1 (ENSABRG00000017838)
Duck	MODERN SPECIES	23	RRAS2 (ENSAPLG00000019435)	COPB1 (ENSAPLG00000007005)	PSMA1 (ENSAPLG00000007846)	CALCB (ENSAPLG00000008604)	INSC (ENSAPLG00000008621)	SOX6 (ENSAPLG00000008744)	C11orf58 (ENSAPLG00000018784)	PLEKHA7 (ENSAPLG00000008901)	RPS13 (ENSAPLG00000011983)	PIK3C2A (ENSAPLG00000010801)	NUCB2 (ENSAPLG00000010426)	KCNJ11 (ENSAPLG00000021853)	ABCC8 (ENSAPLG00000009025)	USH1C (ENSAPLG00000008735)	OTOG (ENSAPLG00000008072)	MYOD1 (ENSAPLG00000005673) ##22	KCNC1 (ENSAPLG00000005789)	SERGEF (ENSAPLG00000005876)	ENSAPLG00000006128	CYB5R2 (ENSAPLG00000006316)	PPFIBP2 (ENSAPLG00000006571)	OLFML1 (ENSAPLG00000006707)	SYT9 (ENSAPLG00000006733)	SPON1 (ENSAPLG00000006849)	C11orf91 (ENSAPLG00000017898)	KIAA1549L (ENSAPLG00000008459)	HIPK3 (ENSAPLG00000007742)	CSTF3 (ENSAPLG00000007217)	ENSAPLG00000017408	ENSAPLG00000026679	ENSAPLG00000006924
Phasianidae	ANCESTRAL SPECIES	4	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000159916	ENSGT00940000156870	ENSGT00940000159535
Japanese quail	MODERN SPECIES	23	PDE3B (ENSCJPG00005004739)	CYP2R1 (ENSCJPG00005004751)	CALCB (ENSCJPG00005004753)	INSC (ENSCJPG00005004754)	SOX6 (ENSCJPG00005004765)	C11orf58 (ENSCJPG00005005288)	PLEKHA7 (ENSCJPG00005005307)	RPS13 (ENSCJPG00005006391)	PIK3C2A (ENSCJPG00005006394)	NUCB2 (ENSCJPG00005006615)	KCNJ11 (ENSCJPG00005006618)	ABCC8 (ENSCJPG00005006650)	USH1C (ENSCJPG00005010751)	OTOG (ENSCJPG00005010752)	ENSCJPG00005010753	MYOD1 (ENSCJPG00005010754) ##22	ENSCJPG00005010755	ENSCJPG00005010756	ENSCJPG00005010757	NAP1L4 (ENSCJPG00005010758)	CARS1 (ENSCJPG00005010761)	ENSCJPG00005010762	OSBPL5 (ENSCJPG00005010764)	ENSCJPG00005010766	PTPN5 (ENSCJPG00005010769)	TMEM86A (ENSCJPG00005010770)	SPTY2D1 (ENSCJPG00005010771)	ENSCJPG00005010772	TSG101 (ENSCJPG00005010773)	LDHA (ENSCJPG00005010774)	GTF2H1 (ENSCJPG00005010775)
Phasianidae_b	ANCESTRAL SPECIES	3	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000159916	ENSGT00940000156870	ENSGT00940000159535	ENSGT00930000151070
Chicken	MODERN SPECIES	34	CYP2R1 (ENSGALG00010023724)	CALCA (ENSGALG00010023759)	INSC (ENSGALG00010022949)	SOX6 (ENSGALG00010023131)	C11orf58 (ENSGALG00010023144)	PLEKHA7 (ENSGALG00010023181)	RPS13 (ENSGALG00010023199)	PIK3C2A (ENSGALG00010023209)	NUCB2 (ENSGALG00010023238)	KCNJ11 (ENSGALG00010023268)	ABCC8 (ENSGALG00010023276)	ENSGALG00010023291	USH1C (ENSGALG00010025330)	OTOG (ENSGALG00010024347)	FTL (ENSGALG00010024360)	MYOD1 (ENSGALG00010024369) ##22	KCNC1 (ENSGALG00010024401)	SERGEF (ENSGALG00010024423)	TPH1 (ENSGALG00010026924)	SAAL1 (ENSGALG00010024428)	SAA (ENSGALG00010024441)	HPS5 (ENSGALG00010024454)	GTF2H1 (ENSGALG00010024469)	LDHA (ENSGALG00010024472)	UEVLD (ENSGALG00010024496)	SPTY2D1 (ENSGALG00010024513)	TMEM86A (ENSGALG00010024532)	PTPN5 (ENSGALG00010024540)	PTPRJ (ENSGALG00010024013)	OSBPL5 (ENSGALG00010024035)	ENSGALG00010024052
Turkey	MODERN SPECIES	25	ENSMGAG00000007515	ENSMGAG00000007501	ENSMGAG00000007465	ENSMGAG00000021944	ENSMGAG00000020292	ENSMGAG00000007372	ENSMGAG00000007354	ENSMGAG00000021100	ENSMGAG00000007279	ENSMGAG00000022734	ENSMGAG00000017600	ENSMGAG00000007273	ENSMGAG00000007226	ENSMGAG00000018777	ENSMGAG00000007219	MYOD1 (ENSMGAG00000007210) ##22	ENSMGAG00000007193	ENSMGAG00000017195	ENSMGAG00000021863	ENSMGAG00000020676	ENSMGAG00000006967	ENSMGAG00000006904	ENSMGAG00000006961	ENSMGAG00000021792	ENSMGAG00000006883	ENSMGAG00000019220	ENSMGAG00000006867	ENSMGAG00000022245	ENSMGAG00000018488	ENSMGAG00000022642	ENSMGAG00000006814
Neognathae_b	ANCESTRAL SPECIES	14	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000159916	ENSGT00940000156870	ENSGT00940000159535
Neognathae_c	ANCESTRAL SPECIES	17	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000159916	ENSGT00940000156870	ENSGT00940000159535
Golden eagle	MODERN SPECIES	7	CYP2R1 (ENSACCG00020012873)	CALCB (ENSACCG00020012823)	INSC (ENSACCG00020012787)	SOX6 (ENSACCG00020012746)	C11orf58 (ENSACCG00020012713)	PLEKHA7 (ENSACCG00020012653)	ENSACCG00020012617	RPS13 (ENSACCG00020012604)	PIK3C2A (ENSACCG00020012476)	NUCB2 (ENSACCG00020012398)	KCNJ11 (ENSACCG00020012371)	ABCC8 (ENSACCG00020012283)	USH1C (ENSACCG00020012229)	OTOG (ENSACCG00020012135)	ENSACCG00020012030	MYOD1 (ENSACCG00020012010) ##22	KCNC1 (ENSACCG00020011992)	SERGEF (ENSACCG00020011956)	TPH1 (ENSACCG00020011925)	SAAL1 (ENSACCG00020011891)	ENSACCG00020011849	HPS5 (ENSACCG00020011823)	GTF2H1 (ENSACCG00020011784)	LDHA (ENSACCG00020011744)	ENSACCG00020011654	SPTY2D1 (ENSACCG00020011558)	TMEM86A (ENSACCG00020011544)	PTPN5 (ENSACCG00020011520)	ENSACCG00020011450	OSBPL5 (ENSACCG00020011408)	ENSACCG00020011396
Kakapo	MODERN SPECIES	21	CYP2R1 (ENSSHBG00005013764)	CALCB (ENSSHBG00005013758)	INSC (ENSSHBG00005013739)	SOX6 (ENSSHBG00005013226)	C11orf58 (ENSSHBG00005013164)	PLEKHA7 (ENSSHBG00005012968)	RPS13 (ENSSHBG00005012856)	ENSSHBG00005012355	ENSSHBG00005012272	NUCB2 (ENSSHBG00005000815)	KCNJ11 (ENSSHBG00005000811)	ABCC8 (ENSSHBG00005000788)	USH1C (ENSSHBG00005000692)	OTOG (ENSSHBG00005004083)	ENSSHBG00005004063	MYOD1 (ENSSHBG00005004057) ##22	KCNC1 (ENSSHBG00005004052)	SERGEF (ENSSHBG00005004045)	TPH1 (ENSSHBG00005004036)	SAAL1 (ENSSHBG00005004015)	ENSSHBG00005004000	HPS5 (ENSSHBG00005003984)	GTF2H1 (ENSSHBG00005003950)	LDHA (ENSSHBG00005003929)	TSG101 (ENSSHBG00005003912)	UEVLD (ENSSHBG00005003887)	SPTY2D1 (ENSSHBG00005003868)	TMEM86A (ENSSHBG00005003850)	PTPN5 (ENSSHBG00005003830)	ENSSHBG00005003781	OSBPL5 (ENSSHBG00005003762)
Passeriformes	ANCESTRAL SPECIES	5	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000159916	ENSGT00940000156870	ENSGT00940000159535
Great tit	MODERN SPECIES	25	NAV2 (ENSPMJG00000008481)	E2F8 (ENSPMJG00000008513)	CSRP3 (ENSPMJG00000008514)	ZDHHC13 (ENSPMJG00000008515) ##9	SOX6 (ENSPMJG00000008569)	C11orf58 (ENSPMJG00000008572)	PLEKHA7 (ENSPMJG00000008582)	RPS13 (ENSPMJG00000008585)	PIK3C2A (ENSPMJG00000008586)	NUCB2 (ENSPMJG00000008588)	KCNJ11 (ENSPMJG00000008589)	ABCC8 (ENSPMJG00000008592)	USH1C (ENSPMJG00000008603)	OTOG (ENSPMJG00000008606)	ENSPMJG00000008624	MYOD1 (ENSPMJG00000008625) ##22	KCNC1 (ENSPMJG00000008627)	SERGEF (ENSPMJG00000008648)	TPH1 (ENSPMJG00000008649)	SAAL1 (ENSPMJG00000008652)	HPS5 (ENSPMJG00000008665)	GTF2H1 (ENSPMJG00000008670)	LDHA (ENSPMJG00000008676)	TSG101 (ENSPMJG00000008680)	ENSPMJG00000008681	SPTY2D1 (ENSPMJG00000008684)	TMEM86A (ENSPMJG00000008704)	PTPN5 (ENSPMJG00000008706)	ENSPMJG00000008719	OSBPL5 (ENSPMJG00000009085)	ENSPMJG00000009118
Passeriformes_d	ANCESTRAL SPECIES	5	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066.t	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000159916	ENSGT00940000156870
Flycatcher	MODERN SPECIES	24	PDE3B (ENSFALG00000000827)	CYP2R1 (ENSFALG00000000820)	CALCB (ENSFALG00000024809)	INSC (ENSFALG00000000814)	SOX6 (ENSFALG00000000798)	C11orf58 (ENSFALG00000026715)	PLEKHA7 (ENSFALG00000000789)	RPS13 (ENSFALG00000000784)	PIK3C2A (ENSFALG00000000780)	NUCB2 (ENSFALG00000000778)	KCNJ11 (ENSFALG00000014605)	ABCC8 (ENSFALG00000000775)	USH1C (ENSFALG00000000770)	OTOG (ENSFALG00000000765)	ENSFALG00000028324	MYOD1 (ENSFALG00000000758) ##22	KCNC1 (ENSFALG00000000754)	SERGEF (ENSFALG00000011059)	TPH1 (ENSFALG00000011078)	SAAL1 (ENSFALG00000011111)	ENSFALG00000024967	ENSFALG00000011119	HPS5 (ENSFALG00000011125)	GTF2H1 (ENSFALG00000011148)	LDHA (ENSFALG00000011162)	ENSFALG00000011218	SPTY2D1 (ENSFALG00000011262)	TMEM86A (ENSFALG00000011276)	PTPN5 (ENSFALG00000011286)	OSBPL5 (ENSFALG00000011338)	ENSFALG00000027690
Passeriformes_g	ANCESTRAL SPECIES		ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066.t	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000159916	ENSGT00940000156870
Passeroidea	ANCESTRAL SPECIES	1	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066.t	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000159916	ENSGT00940000156870	ENSGT00940000159535
Common canary	MODERN SPECIES	3	PDE3B (ENSSCAG00000005287)	CYP2R1 (ENSSCAG00000005278)	CALCB (ENSSCAG00000005276)	INSC (ENSSCAG00000005272)	SOX6 (ENSSCAG00000005255)	C11orf58 (ENSSCAG00000005235)	PLEKHA7 (ENSSCAG00000005218)	RPS13 (ENSSCAG00000005185)	PIK3C2A (ENSSCAG00000005178)	NUCB2 (ENSSCAG00000005171)	KCNJ11 (ENSSCAG00000005168)	ABCC8 (ENSSCAG00000005141)	USH1C (ENSSCAG00000005121)	OTOG (ENSSCAG00000005097)	ENSSCAG00000005088	MYOD1 (ENSSCAG00000005079) ##22	KCNC1 (ENSSCAG00000005066)	SERGEF (ENSSCAG00000005048)	TPH1 (ENSSCAG00000005038)	SAAL1 (ENSSCAG00000005025)	ENSSCAG00000005016	HPS5 (ENSSCAG00000005001)	GTF2H1 (ENSSCAG00000004990)	LDHA (ENSSCAG00000004984)	ENSSCAG00000004978	TSG101 (ENSSCAG00000004960)	SPTY2D1 (ENSSCAG00000004949)	TMEM86A (ENSSCAG00000004939)	PTPN5 (ENSSCAG00000004927)	ENSSCAG00000004917	ENSSCAG00000004876
Zebra finch	MODERN SPECIES	27	PDE3B (ENSTGUG00000008479)	CYP2R1 (ENSTGUG00000008492)	CALCB (ENSTGUG00000008509)	INSC (ENSTGUG00000008514)	SOX6 (ENSTGUG00000008522)	C11orf58 (ENSTGUG00000024921)	PLEKHA7 (ENSTGUG00000008557)	RPS13 (ENSTGUG00000008572)	PIK3C2A (ENSTGUG00000008575)	NUCB2 (ENSTGUG00000008639)	KCNJ11 (ENSTGUG00000008677)	ABCC8 (ENSTGUG00000008682)	USH1C (ENSTGUG00000008748)	OTOG (ENSTGUG00000008789)	ENSTGUG00000008813	MYOD1 (ENSTGUG00000008814) ##22	KCNC1 (ENSTGUG00000008821)	SERGEF (ENSTGUG00000008830)	TPH1 (ENSTGUG00000008841)	SAAL1 (ENSTGUG00000008863)	ENSTGUG00000025044	HPS5 (ENSTGUG00000008872)	ENSTGUG00000008904	LDHA (ENSTGUG00000008930)	TSG101 (ENSTGUG00000008935)	ENSTGUG00000008943	SPTY2D1 (ENSTGUG00000008968)	TMEM86A (ENSTGUG00000025382)	PTPN5 (ENSTGUG00000008983)	ENSTGUG00000009007	OSBPL5 (ENSTGUG00000009038)
Medium ground finch	MODERN SPECIES	113	PSMA1 (ENSGFOG00000009164)	PDE3B (ENSGFOG00000009185)	CYP2R1 (ENSGFOG00000009306)	CALCB (ENSGFOG00000009314)	INSC (ENSGFOG00000009330)	SOX6 (ENSGFOG00000009373)	C11orf58 (ENSGFOG00000009400)	PLEKHA7 (ENSGFOG00000009416)	RPS13 (ENSGFOG00000009433)	PIK3C2A (ENSGFOG00000009443)	NUCB2 (ENSGFOG00000009474)	KCNJ11 (ENSGFOG00000009487)	ABCC8 (ENSGFOG00000009786)	USH1C (ENSGFOG00000014191)	OTOG (ENSGFOG00000014193)	MYOD1 (ENSGFOG00000014197) ##22	KCNC1 (ENSGFOG00000014198)
Australian saltwater crocodile	MODERN SPECIES	64	CYP2R1 (ENSCPRG00005001210)	ENSCPRG00005001195	INSC (ENSCPRG00005001166)	SOX6 (ENSCPRG00005001080)	C11orf58 (ENSCPRG00005001016)	PLEKHA7 (ENSCPRG00005000979)	RPS13 (ENSCPRG00005000894)	PIK3C2A (ENSCPRG00005000874)	NUCB2 (ENSCPRG00005000844)	ENSCPRG00005000808	KCNJ11 (ENSCPRG00005000802)	ABCC8 (ENSCPRG00005000714)	USH1C (ENSCPRG00005000582)	OTOG (ENSCPRG00005000529)	ENSCPRG00005000446	MYOD1 (ENSCPRG00005000428) ##22	KCNC1 (ENSCPRG00005000411)	SERGEF (ENSCPRG00005000274)	TPH1 (ENSCPRG00005000260)	SAAL1 (ENSCPRG00005000231)	ENSCPRG00005000214	ENSCPRG00005017256	HPS5 (ENSCPRG00005017251)	GTF2H1 (ENSCPRG00005017249)	LDHA (ENSCPRG00005017245)	ENSCPRG00005017243	TSG101 (ENSCPRG00005017234)	SPTY2D1 (ENSCPRG00005017230)	TMEM86A (ENSCPRG00005017229)	IGSF22 (ENSCPRG00005017227)	PTPN5 (ENSCPRG00005017224)
Mammalia	ANCESTRAL SPECIES	9	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT01030000235062	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000175801	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123	ENSGT00940000159916
Theria	ANCESTRAL SPECIES	8	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000175801	ENSGT00390000017491.s.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000163242	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084	ENSGT00940000154133.A
Eutheria	ANCESTRAL SPECIES	3	ENSGT00940000162876	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000175801	ENSGT00390000017491.s.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000163242	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000164956	ENSGT01050000245084
Atlantogenata	ANCESTRAL SPECIES	13	ENSGT00940000158305	ENSGT00940000156267	ENSGT00940000162876	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000163242	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b
Afrotheria	ANCESTRAL SPECIES	16	ENSGT00940000158305	ENSGT00940000156267	ENSGT00940000162876	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000163242	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123	ENSGT00940000159916
Afrotheria_a	ANCESTRAL SPECIES	17	ENSGT00940000158305	ENSGT00940000156267	ENSGT00940000162876	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000163242	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123	ENSGT00940000159916
Elephant	MODERN SPECIES	209	PDE3B (ENSLAFG00000008453)	CYP2R1 (ENSLAFG00000005356)	ENSLAFG00000003276	ENSLAFG00000015843	INSC (ENSLAFG00000005686)	SOX6 (ENSLAFG00000002917)	C11orf58 (ENSLAFG00000007606)	PLEKHA7 (ENSLAFG00000007609)	RPS13 (ENSLAFG00000026881)	PIK3C2A (ENSLAFG00000003710)	NUCB2 (ENSLAFG00000007349)	KCNJ11 (ENSLAFG00000031878)	ABCC8 (ENSLAFG00000007014)	USH1C (ENSLAFG00000022470)	OTOG (ENSLAFG00000004882)	MYOD1 (ENSLAFG00000018353) ##22	KCNC1 (ENSLAFG00000018355)	SERGEF (ENSLAFG00000018367)	ENSLAFG00000007862	ENSLAFG00000027166	HPS5 (ENSLAFG00000011289)	GTF2H1 (ENSLAFG00000011296)	ENSLAFG00000011307	LDHAL6B (ENSLAFG00000003680)	TSG101 (ENSLAFG00000003682)	UEVLD (ENSLAFG00000020671)	SPTY2D1 (ENSLAFG00000003686)	TMEM86A (ENSLAFG00000002024)	IGSF22 (ENSLAFG00000031965)	PTPN5 (ENSLAFG00000013689)	ENSLAFG00000032037
Hyrax	MODERN SPECIES	2097																MYOD1 (ENSPCAG00000001317) ##22	KCNC1 (ENSPCAG00000001336)
Tenrec	MODERN SPECIES	12083																MYOD1 (ENSETEG00000003979) ##22
Xenarthra	ANCESTRAL SPECIES	1009													ENSGT00940000156626.h	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912
Armadillo	MODERN SPECIES	788								ENSDNOG00000038648	ENSDNOG00000045802	ENSDNOG00000031477	NUP43 (ENSDNOG00000046324)	LATS1 (ENSDNOG00000019236)	ENSDNOG00000034858	USH1C (ENSDNOG00000031779)	OTOG (ENSDNOG00000015439)	MYOD1 (ENSDNOG00000017164) ##22	KCNC1 (ENSDNOG00000048695)	ENSDNOG00000039972
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00940000162876	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000175801	ENSGT00390000017491.s.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT01030000235549	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00940000162876	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000175801	ENSGT00390000017491.s.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00940000155818	ENSGT00390000015066	ENSGT01030000235549	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000175801	ENSGT00390000017491.s.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00940000155818	ENSGT00390000015066	ENSGT01030000235549	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00940000158305	ENSGT00940000156267	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00940000155818	ENSGT00390000015066	ENSGT01030000235549	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a
Suina	ANCESTRAL SPECIES	34	ENSGT00940000158305	ENSGT00940000166205.a.a	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT01030000235549	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084	ENSGT00940000154133.A
Pig	MODERN SPECIES	10	ENSSSCG00000035649	ENSSSCG00000013387	ENSSSCG00000013386	ENSSSCG00000026512	INSC (ENSSSCG00000013385)	SOX6 (ENSSSCG00000034191)	C11orf58 (ENSSSCG00000040570)	PLEKHA7 (ENSSSCG00000013382)	RPS13 (ENSSSCG00000013381)	PIK3C2A (ENSSSCG00000025406)	ENSSSCG00000013380	KCNJ11 (ENSSSCG00000042162)	ABCC8 (ENSSSCG00000013378)	USH1C (ENSSSCG00000013377)	OTOG (ENSSSCG00000013376)	MYOD1 (ENSSSCG00000013375) ##22	KCNC1 (ENSSSCG00000013374)	SERGEF (ENSSSCG00000042767)	TPH1 (ENSSSCG00000054840)	SAAL1 (ENSSSCG00000035393)	ENSSSCG00000037358	ENSSSCG00000046269	ENSSSCG00000052907	ENSSSCG00000013369	ENSSSCG00000045256	GTF2H1 (ENSSSCG00000013367)	LDHA (ENSSSCG00000013366)	LDHC (ENSSSCG00000013363)	ENSSSCG00000041063	UEVLD (ENSSSCG00000013362)	MISFA (ENSSSCG00000038037)
Chacoan peccary	MODERN SPECIES	919	ENSCWAG00000019355	ENSCWAG00000019335	ENSCWAG00000019318	INSC (ENSCWAG00000019215)	SOX6 (ENSCWAG00000018979)	C11orf58 (ENSCWAG00000018946)	PLEKHA7 (ENSCWAG00000018738)	ENSCWAG00000018676	PIK3C2A (ENSCWAG00000018580)	NUCB2 (ENSCWAG00000018398)	ENSCWAG00000018371	KCNJ11 (ENSCWAG00000018360)	ABCC8 (ENSCWAG00000016534)	USH1C (ENSCWAG00000016103)	OTOG (ENSCWAG00000015797)	MYOD1 (ENSCWAG00000015755) ##22	KCNC1 (ENSCWAG00000015694)	SERGEF (ENSCWAG00000015651)	TPH1 (ENSCWAG00000015561)	SAAL1 (ENSCWAG00000015499)	ENSCWAG00000015451	SAA4 (ENSCWAG00000015410)	HPS5 (ENSCWAG00000015353)	GTF2H1 (ENSCWAG00000015209)	ENSCWAG00000015174	ENSCWAG00000015145	ENSCWAG00000015128	LDHC (ENSCWAG00000014623)	TSG101 (ENSCWAG00000014545)	ENSCWAG00000014527	ENSCWAG00000014496
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00940000158305	ENSGT00940000156267	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT01030000235549	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT00940000166205.a	ENSGT00940000156267	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.u	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084	ENSGT00940000154133.A	ENSGT00390000007101.d.b
Cetacea	ANCESTRAL SPECIES	4	ENSGT00940000167952	ENSGT00940000156267.eb	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.r	ENSGT00940000157813	ENSGT00940000157251.hb	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.u	ENSGT00940000161479	ENSGT00940000153903.a.a.m.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084	ENSGT00940000164956	ENSGT00940000154133.A
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00940000167952	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.r	ENSGT00940000157813	ENSGT00940000157251.hb	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.u	ENSGT00940000161479	ENSGT00940000153903.a.a.m.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084	ENSGT00940000154133.A	ENSGT00390000007101.d.b
Sperm whale	MODERN SPECIES	7	INSC (ENSPCTG00005013109)	SOX6 (ENSPCTG00005013480)	C16H11orf58 (ENSPCTG00005013885)	ENSPCTG00005013965	PLEKHA7 (ENSPCTG00005014003)	RPS13 (ENSPCTG00005014477)	ENSPCTG00005014567	PIK3C2A (ENSPCTG00005014624)	ENSPCTG00005015020	NUCB2 (ENSPCTG00005004244)	ENSPCTG00005004506	KCNJ11 (ENSPCTG00005004532)	ABCC8 (ENSPCTG00005004712)	USH1C (ENSPCTG00005006223)	OTOG (ENSPCTG00005006334)	MYOD1 (ENSPCTG00005006484) ##22	KCNC1 (ENSPCTG00005006503)	SERGEF (ENSPCTG00005006546)	TPH1 (ENSPCTG00005006667)	SAAL1 (ENSPCTG00005006752)	ENSPCTG00005006800	ENSPCTG00005006824	ENSPCTG00005006852	HPS5 (ENSPCTG00005006903)	GTF2H1 (ENSPCTG00005007039)	ENSPCTG00005007257	LDHA (ENSPCTG00005007271)	LDHC (ENSPCTG00005007321)	ENSPCTG00005007383	TSG101 (ENSPCTG00005007406)	UEVLD (ENSPCTG00005007495)
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00940000167952	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.r	ENSGT00940000157813	ENSGT00940000157251.hb	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.u	ENSGT00940000161479	ENSGT00940000153903.a.a.m.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084	ENSGT00940000154133.A	ENSGT00390000007101.d.b
Dolphin	MODERN SPECIES	230																MYOD1 (ENSTTRG00000013869) ##22	KCNC1 (ENSTTRG00000013876)	SERGEF (ENSTTRG00000013883)	TPH1 (ENSTTRG00000013891)	SAAL1 (ENSTTRG00000013896)	ENSTTRG00000013900	ENSTTRG00000013902
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00940000167952	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.r	ENSGT00940000157813	ENSGT00940000157251.hb	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.u	ENSGT00940000161479	ENSGT00940000153903.a.a.m.a	ENSGT00940000153903.a.b.b	ENSGT00390000012981.rb.a.a	ENSGT01050000245084	ENSGT00940000154133.A
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00940000167380	ENSGT00390000001511	ENSGT00390000018086.y.b.b	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.r	ENSGT00940000157813	ENSGT00940000157251.hb	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.u	ENSGT00940000161479	ENSGT00940000153903.a.a.m.a	ENSGT00940000153903.a.b.b	ENSGT00390000012981.rb.a.a	ENSGT01050000245084	ENSGT00940000154133.A	ENSGT00390000007101.d.b
Beluga whale	MODERN SPECIES	32	ENSDLEG00000005632	INSC (ENSDLEG00000005606)	ENSDLEG00000005557	SOX6 (ENSDLEG00000005509)	CUNH11orf58 (ENSDLEG00000005498)	PLEKHA7 (ENSDLEG00000005386)	RPS13 (ENSDLEG00000005358)	ENSDLEG00000020962	PIK3C2A (ENSDLEG00000020912)	NUCB2 (ENSDLEG00000020854)	ENSDLEG00000020840	KCNJ11 (ENSDLEG00000020835)	ABCC8 (ENSDLEG00000016659)	USH1C (ENSDLEG00000016116)	OTOG (ENSDLEG00000015797)	MYOD1 (ENSDLEG00000015755) ##22	KCNC1 (ENSDLEG00000015743)	SERGEF (ENSDLEG00000015727)	TPH1 (ENSDLEG00000015701)	SAAL1 (ENSDLEG00000015675)	ENSDLEG00000015657	HPS5 (ENSDLEG00000015626)	GTF2H1 (ENSDLEG00000015605)	ENSDLEG00000015586	ENSDLEG00000015577	TSG101 (ENSDLEG00000015564)	ENSDLEG00000015553	UEVLD (ENSDLEG00000015524)	MISFA (ENSDLEG00000015517)	ENSDLEG00000015507	TMEM86A (ENSDLEG00000015500)
Narwhal	MODERN SPECIES	314	ENSMMNG00015021136	INSC (ENSMMNG00015021164)	ENSMMNG00015021215	SOX6 (ENSMMNG00015021242)	C11orf58 (ENSMMNG00015021280)	PLEKHA7 (ENSMMNG00015021305)	RPS13 (ENSMMNG00015021335)	PIK3C2A (ENSMMNG00015021358)	ENSMMNG00015021368	NUCB2 (ENSMMNG00015021400)	ENSMMNG00015021437	KCNJ11 (ENSMMNG00015021442)	ABCC8 (ENSMMNG00015021473)	USH1C (ENSMMNG00015021503)	OTOG (ENSMMNG00015021531)	MYOD1 (ENSMMNG00015021563) ##22	KCNC1 (ENSMMNG00015021571)	SERGEF (ENSMMNG00015021595)	TPH1 (ENSMMNG00015021621)	SAAL1 (ENSMMNG00015021635)	ENSMMNG00015021647	ENSMMNG00015021651	ENSMMNG00015021655	HPS5 (ENSMMNG00015021667)	GTF2H1 (ENSMMNG00015021680)	ENSMMNG00015021692	ENSMMNG00015021700	ENSMMNG00015021702	ENSMMNG00015021710	TSG101 (ENSMMNG00015021720)	UEVLD (ENSMMNG00015021744)
Vaquita	MODERN SPECIES	19	ENSPSNG00000005826	ENSPSNG00000005847	ENSPSNG00000005882	INSC (ENSPSNG00000005971)	SOX6 (ENSPSNG00000006212)	C11orf58 (ENSPSNG00000006414)	PLEKHA7 (ENSPSNG00000006504)	PIK3C2A (ENSPSNG00000006633)	ENSPSNG00000006740	NUCB2 (ENSPSNG00000006795)	ENSPSNG00000006848	KCNJ11 (ENSPSNG00000006886)	ABCC8 (ENSPSNG00000007231)	USH1C (ENSPSNG00000008836)	OTOG (ENSPSNG00000009133)	MYOD1 (ENSPSNG00000009194) ##22	KCNC1 (ENSPSNG00000009240)	SERGEF (ENSPSNG00000009362)	TPH1 (ENSPSNG00000009426)	SAAL1 (ENSPSNG00000009495)	ENSPSNG00000009564	ENSPSNG00000009625	ENSPSNG00000009709	ENSPSNG00000009755	ENSPSNG00000009837	HPS5 (ENSPSNG00000009992)	GTF2H1 (ENSPSNG00000010188)	ENSPSNG00000010281	ENSPSNG00000010383	ENSPSNG00000010416	TSG101 (ENSPSNG00000010472)
Blue whale	MODERN SPECIES	19	ENSBMSG00010011268	INSC (ENSBMSG00010011315)	SOX6 (ENSBMSG00010011468)	ENSBMSG00010011543	C11orf58 (ENSBMSG00010011553)	PLEKHA7 (ENSBMSG00010011591)	ENSBMSG00010011692	PIK3C2A (ENSBMSG00010011707)	ENSBMSG00010011741	NUCB2 (ENSBMSG00010011776)	ENSBMSG00010011920	KCNJ11 (ENSBMSG00010011930)	ABCC8 (ENSBMSG00010012014)	USH1C (ENSBMSG00010012539)	OTOG (ENSBMSG00010012712)	MYOD1 (ENSBMSG00010012778) ##22	KCNC1 (ENSBMSG00010012786)	SERGEF (ENSBMSG00010012809)	ENSBMSG00010012824	TPH1 (ENSBMSG00010012841)	SAAL1 (ENSBMSG00010012874)	ENSBMSG00010009467	ENSBMSG00010009474	ENSBMSG00010009483	HPS5 (ENSBMSG00010009507)	GTF2H1 (ENSBMSG00010009536)	ENSBMSG00010009579	LDHC (ENSBMSG00010009652)	ENSBMSG00010009854	ENSBMSG00010009877	UEVLD (ENSBMSG00010009936)
Pecora	ANCESTRAL SPECIES	7	ENSGT00940000166205.a	ENSGT00940000156267	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000161189	ENSGT00390000018560.b	ENSGT00940000156649	ENSGT00940000161031	ENSGT00950000183206.b.c.b	ENSGT00940000161473	ENSGT00390000002823	ENSGT00940000159804	ENSGT00940000156097	ENSGT00960000189557
Percora_a	ANCESTRAL SPECIES	6	ENSGT00940000166205.a	ENSGT00940000156267	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.s.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000161189	ENSGT00390000018560.b	ENSGT00940000156649	ENSGT00940000161031	ENSGT00950000183206.b.c.b	ENSGT00940000161473	ENSGT00390000002823	ENSGT00940000159804	ENSGT00940000156097	ENSGT00960000189557
Bovidae	ANCESTRAL SPECIES	6	ENSGT00940000166205.a	ENSGT00940000156267	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.s.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000161189	ENSGT00390000018560.b	ENSGT00940000156649	ENSGT00940000161031	ENSGT00950000183206.b.c.b	ENSGT00940000161473	ENSGT00390000002823	ENSGT00940000159804	ENSGT00940000156097	ENSGT00960000189557
Bovinae	ANCESTRAL SPECIES	21	ENSGT00940000156267	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.s.b	ENSGT00940000157813	ENSGT00390000014320.l	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000161189	ENSGT00390000018560.b	ENSGT00940000156649	ENSGT00940000161031	ENSGT00950000183206.b.c.b	ENSGT00940000161473	ENSGT00390000002823	ENSGT00940000159804	ENSGT00940000156097	ENSGT00960000189557
Bos	ANCESTRAL SPECIES	20	ENSGT00940000156267	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.s.b	ENSGT00940000157813	ENSGT00390000014320.l	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000161189	ENSGT00390000018560.b	ENSGT00940000156649	ENSGT00940000161031	ENSGT00950000183206.b.c.b	ENSGT00940000161473	ENSGT00390000002823	ENSGT00940000159804	ENSGT00940000156097	ENSGT00960000189557
Bos_b	ANCESTRAL SPECIES	19	ENSGT00940000156267	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.s.b	ENSGT00940000157813	ENSGT00390000014320.l	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000161189	ENSGT00390000018560.b	ENSGT00940000156649	ENSGT00940000161031	ENSGT00950000183206.b.c.b	ENSGT00940000161473	ENSGT00390000002823	ENSGT00940000159804	ENSGT00940000156097	ENSGT00960000189557
Hybrid Bos Indicus	MODERN SPECIES	6	INSC (ENSBIXG00005013489)	SOX6 (ENSBIXG00005013279)	ENSBIXG00005001497	C11orf58 (ENSBIXG00005013055)	PLEKHA7 (ENSBIXG00005012963)	ENSBIXG00005012803	ENSBIXG00005005701	PIK3C2A (ENSBIXG00005000289)	ENSBIXG00005012679	NUCB2 (ENSBIXG00005012643)	ENSBIXG00005012573	KCNJ11 (ENSBIXG00005012565)	ABCC8 (ENSBIXG00005000335)	USH1C (ENSBIXG00005012316)	OTOG (ENSBIXG00005012215)	MYOD1 (ENSBIXG00005001263) ##22	KCNC1 (ENSBIXG00005012180)	SERGEF (ENSBIXG00005012129)	TPH1 (ENSBIXG00005001239)	SAAL1 (ENSBIXG00005001235)	ENSBIXG00005011994	ENSBIXG00005011988	ENSBIXG00005001194	ZNF202 (ENSBIXG00005001192)	SCN3B (ENSBIXG00005011870)	GRAMD1B (ENSBIXG00005011762)	CLMP (ENSBIXG00005011593)	ENSBIXG00005011538	BSX (ENSBIXG00005011376)	JHY (ENSBIXG00005011352)	CRTAM (ENSBIXG00005011302)
Cow	MODERN SPECIES	6	CALCA (ENSBTAG00000010089)	CALCB (ENSBTAG00000047380)	INSC (ENSBTAG00000032782)	SOX6 (ENSBTAG00000044185)	C15H11orf58 (ENSBTAG00000006755)	PLEKHA7 (ENSBTAG00000006974)	RPS13 (ENSBTAG00000040308)	ENSBTAG00000032859	PIK3C2A (ENSBTAG00000004901)	NUCB2 (ENSBTAG00000017468)	NCR3LG1 (ENSBTAG00000050060)	KCNJ11 (ENSBTAG00000016170)	ABCC8 (ENSBTAG00000000983)	USH1C (ENSBTAG00000000986)	OTOG (ENSBTAG00000000987)	MYOD1 (ENSBTAG00000002216) ##22	KCNC1 (ENSBTAG00000005424)	SERGEF (ENSBTAG00000005340)	TPH1 (ENSBTAG00000005343)	SAAL1 (ENSBTAG00000008804)	ENSBTAG00000050079	ZNF202 (ENSBTAG00000016684)	SCN3B (ENSBTAG00000016768)	GRAMD1B (ENSBTAG00000001410)	CLMP (ENSBTAG00000020046)	HSPA8 (ENSBTAG00000013162)	BSX (ENSBTAG00000013994)	JHY (ENSBTAG00000013989)	CRTAM (ENSBTAG00000005193)	UBASH3B (ENSBTAG00000000842)	ENSBTAG00000053620
Bos_a	ANCESTRAL SPECIES	15	ENSGT00390000001511	ENSGT00940000156267	ENSGT00940000167380	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.s.b	ENSGT00940000157813	ENSGT00390000014320.l	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000161189	ENSGT00390000018560.b	ENSGT00940000156649	ENSGT00940000161031	ENSGT00950000183206.b.c.b	ENSGT00940000161473	ENSGT00390000002823	ENSGT00940000159804	ENSGT00940000156097	ENSGT01030000234563.a.b
Wild yak	MODERN SPECIES	842				SOX6 (ENSBMUG00000019308)	C11orf58 (ENSBMUG00000018970)	PLEKHA7 (ENSBMUG00000018920)	ENSBMUG00000018750	ENSBMUG00000018732	PIK3C2A (ENSBMUG00000018688)	NUCB2 (ENSBMUG00000018650)	ENSBMUG00000018622	KCNJ11 (ENSBMUG00000018613)	ABCC8 (ENSBMUG00000018420)	USH1C (ENSBMUG00000018213)	OTOG (ENSBMUG00000018131)	MYOD1 (ENSBMUG00000018081) ##22	KCNC1 (ENSBMUG00000018067)	SERGEF (ENSBMUG00000018049)	TPH1 (ENSBMUG00000018029)	SAAL1 (ENSBMUG00000017997)	ENSBMUG00000017967	ENSBMUG00000017949	ZNF202 (ENSBMUG00000017926)	SCN3B (ENSBMUG00000017879)	GRAMD1B (ENSBMUG00000017822)
American bison	MODERN SPECIES	3365	ENSBBBG00000007170	ENSBBBG00000003643	ENSBBBG00000014818	INSC (ENSBBBG00000001200)	SOX6 (ENSBBBG00000000977)	C11orf58 (ENSBBBG00000000901)	PLEKHA7 (ENSBBBG00000014936)	ENSBBBG00000003602	PIK3C2A (ENSBBBG00000003706)	ENSBBBG00000014999	NUCB2 (ENSBBBG00000015107)	KCNJ11 (ENSBBBG00000015136)	ABCC8 (ENSBBBG00000015495)	USH1C (ENSBBBG00000015646)	OTOG (ENSBBBG00000000781)	MYOD1 (ENSBBBG00000015770) ##22	KCNC1 (ENSBBBG00000015796)	SERGEF (ENSBBBG00000015878)	TPH1 (ENSBBBG00000007903)	SAAL1 (ENSBBBG00000015979)	ZNF202 (ENSBBBG00000016005)	SCN3B (ENSBBBG00000016043)	GRAMD1B (ENSBBBG00000000719)	CLMP (ENSBBBG00000016837)	ENSBBBG00000018029	BSX (ENSBBBG00000018188)	JHY (ENSBBBG00000018276)	CRTAM (ENSBBBG00000018292)	UBASH3B (ENSBBBG00000018323)	ENSBBBG00000018379	SORL1 (ENSBBBG00000018493)
Caprinae	ANCESTRAL SPECIES	6	ENSGT00940000166205.a	ENSGT00940000156267	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.s.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000161189	ENSGT00390000018560.b	ENSGT00940000156649	ENSGT00940000161031	ENSGT00950000183206.b.c.b	ENSGT00940000161473	ENSGT00390000002823	ENSGT00940000159804	ENSGT00940000156097	ENSGT01030000234563.a.b	ENSGT00550000075101
Goat	MODERN SPECIES	6	ENSCHIG00000017738	ENSCHIG00000021622	INSC (ENSCHIG00000006694)	SOX6 (ENSCHIG00000021925)	C11orf58 (ENSCHIG00000019685)	PLEKHA7 (ENSCHIG00000013421)	ENSCHIG00000003111 ##23	ENSCHIG00000023276	PIK3C2A (ENSCHIG00000015119)	ENSCHIG00000010858	NUCB2 (ENSCHIG00000025278)	KCNJ11 (ENSCHIG00000009617)	ABCC8 (ENSCHIG00000014117)	USH1C (ENSCHIG00000006681)	OTOG (ENSCHIG00000002155)	MYOD1 (ENSCHIG00000009793) ##22	KCNC1 (ENSCHIG00000010620)	SERGEF (ENSCHIG00000016321)	TPH1 (ENSCHIG00000022168)	SAAL1 (ENSCHIG00000014782)	ZNF202 (ENSCHIG00000026799)	SCN3B (ENSCHIG00000006052)	GRAMD1B (ENSCHIG00000012464)	CLMP (ENSCHIG00000010482)	HSPA8 (ENSCHIG00000017000)	BSX (ENSCHIG00000002885)	JHY (ENSCHIG00000006072)	ENSCHIG00000017759	CRTAM (ENSCHIG00000016236)	UBASH3B (ENSCHIG00000027002)	SORL1 (ENSCHIG00000020653)
Rambouillet Sheep	MODERN SPECIES	6	CALCA (ENSOARG00020007665)	INSC (ENSOARG00020007458)	SOX6 (ENSOARG00020007177)	HSP10 (ENSOARG00020007118)	C11orf58 (ENSOARG00020007043)	PLEKHA7 (ENSOARG00020006298)	ENSOARG00020006224	PIK3C2A (ENSOARG00020005921)	ENSOARG00020005854	NUCB2 (ENSOARG00020005797)	ENSOARG00020005772	KCNJ11 (ENSOARG00020005759)	ABCC8 (ENSOARG00020004289)	USH1C (ENSOARG00020004095)	OTOG (ENSOARG00020003321)	MYOD1 (ENSOARG00020003202) ##22	KCNC1 (ENSOARG00020023195)	SERGEF (ENSOARG00020023024)	TPH1 (ENSOARG00020022961)	SAAL1 (ENSOARG00020022824)	ZNF202 (ENSOARG00020022786)	SCN3B (ENSOARG00020022761)	GRAMD1B (ENSOARG00020020792)	CLMP (ENSOARG00020020617)	HSPA8 (ENSOARG00020020443)	BSX (ENSOARG00020020411)	JHY (ENSOARG00020020294)	CRTAM (ENSOARG00020020211)	UBASH3B (ENSOARG00020020117)	ENSOARG00020020082	ENSOARG00020019983
Siberian musk deer	MODERN SPECIES	1170	ENSMMSG00000013203	SOX6 (ENSMMSG00000013238)	ENSMMSG00000013376	C11orf58 (ENSMMSG00000013390)	PLEKHA7 (ENSMMSG00000013421)	ENSMMSG00000013583	PIK3C2A (ENSMMSG00000013636)	NUCB2 (ENSMMSG00000013778)	ENSMMSG00000013898	KCNJ11 (ENSMMSG00000013924)	ABCC8 (ENSMMSG00000014012)	USH1C (ENSMMSG00000015357)	OTOG (ENSMMSG00000015691)	ENSMMSG00000015857	ENSMMSG00000015872	MYOD1 (ENSMMSG00000015886) ##22	KCNC1 (ENSMMSG00000015913)	SERGEF (ENSMMSG00000015986)	TPH1 (ENSMMSG00000016054)	SAAL1 (ENSMMSG00000016101)	ENSMMSG00000016147	ZNF202 (ENSMMSG00000016172)	SCN3B (ENSMMSG00000016197)	GRAMD1B (ENSMMSG00000016337)	CLMP (ENSMMSG00000019631)	ENSMMSG00000019680	BSX (ENSMMSG00000019731)	JHY (ENSMMSG00000019753)	CRTAM (ENSMMSG00000019788)	ENSMMSG00000019827	UBASH3B (ENSMMSG00000019850)
Yarkand deer	MODERN SPECIES		ENSCHYG00000017642	ENSCHYG00000017547	INSC (ENSCHYG00000017107)	ENSCHYG00000017074	SOX6 (ENSCHYG00000016309)	C11orf58 (ENSCHYG00000016095)	PLEKHA7 (ENSCHYG00000015374)	ENSCHYG00000015259	PIK3C2A (ENSCHYG00000014721)	NUCB2 (ENSCHYG00000014573)	ENSCHYG00000014538	KCNJ11 (ENSCHYG00000014523)	ABCC8 (ENSCHYG00000013838)	USH1C (ENSCHYG00000013383)	OTOG (ENSCHYG00000013158)	MYOD1 (ENSCHYG00000013095) ##22	KCNC1 (ENSCHYG00000013038)	SERGEF (ENSCHYG00000012902)	TPH1 (ENSCHYG00000012793)	SAAL1 (ENSCHYG00000012719)	ENSCHYG00000012579	ZNF202 (ENSCHYG00000012502)	SCN3B (ENSCHYG00000012415)	GRAMD1B (ENSCHYG00000011570)	CLMP (ENSCHYG00000011450)	HSPA8 (ENSCHYG00000011182)	ENSCHYG00000011140	BSX (ENSCHYG00000011105)	JHY (ENSCHYG00000011012)	CRTAM (ENSCHYG00000010922)	UBASH3B (ENSCHYG00000010800)
Camelidae	ANCESTRAL SPECIES	25	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000166205.a	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00990000212997	ENSGT00940000155818	ENSGT00390000015066	ENSGT01030000235549	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A
Arabian camel	MODERN SPECIES	1	ENSCDRG00005017138	ENSCDRG00005017126	ENSCDRG00005017091	ENSCDRG00005017047	INSC (ENSCDRG00005016735)	SOX6 (ENSCDRG00005016113)	C11orf58 (ENSCDRG00005016004)	PLEKHA7 (ENSCDRG00005015761)	RPS13 (ENSCDRG00005015649)	PIK3C2A (ENSCDRG00005015424)	NUCB2 (ENSCDRG00005015072)	KCNJ11 (ENSCDRG00005015019)	ABCC8 (ENSCDRG00005014728)	USH1C (ENSCDRG00005014521)	OTOG (ENSCDRG00005014084)	MYOD1 (ENSCDRG00005014006) ##22	KCNC1 (ENSCDRG00005013940)	SERGEF (ENSCDRG00005013823)	TPH1 (ENSCDRG00005013726)	SAAL1 (ENSCDRG00005013646)	ENSCDRG00005013613	ENSCDRG00005013545	HPS5 (ENSCDRG00005013369)	GTF2H1 (ENSCDRG00005013223)	ENSCDRG00005013197	ENSCDRG00005013169	LDHC (ENSCDRG00005012071)	TSG101 (ENSCDRG00005011857)	UEVLD (ENSCDRG00005011579)	ENSCDRG00005011524	SPTY2D1 (ENSCDRG00005011497)
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000175801	ENSGT00390000017491.s.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT01030000235549	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a
Carnivora	ANCESTRAL SPECIES	7	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000175801	ENSGT00390000017491.s.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.m.a	ENSGT01030000235549	ENSGT00940000153201.j.n	ENSGT00940000153201.j.m.b	ENSGT00940000161479	ENSGT00940000153903.a.a
Caniformia	ANCESTRAL SPECIES	25	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000175801	ENSGT00390000017491.s.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.m.a	ENSGT01030000235549	ENSGT00940000153201.j.n	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b
Caniformia_b	ANCESTRAL SPECIES	3	ENSGT00940000167380	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.m.a	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084	ENSGT01050000247925	ENSGT00940000154133.A
Ursidae	ANCESTRAL SPECIES	2	ENSGT00940000156267	ENSGT00940000162876	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.m.a	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084	ENSGT01050000247925	ENSGT00940000154133.A
Ursus	ANCESTRAL SPECIES	201		ENSGT00940000162876	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626.k	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b
American black bear	MODERN SPECIES	1320																MYOD1 (ENSUAMG00000027939) ##22	KCNC1 (ENSUAMG00000027940)
Polar bear	MODERN SPECIES	327		CALCA (ENSUMAG00000023404)	ENSUMAG00000023409	INSC (ENSUMAG00000023412)	SOX6 (ENSUMAG00000023422)	C11orf58 (ENSUMAG00000023447)	PLEKHA7 (ENSUMAG00000023454)	RPS13 (ENSUMAG00000023470)	PIK3C2A (ENSUMAG00000023475)	NUCB2 (ENSUMAG00000023477)	ENSUMAG00000023479	KCNJ11 (ENSUMAG00000023484)	ABCC8 (ENSUMAG00000023493)	USH1C (ENSUMAG00000023605)	OTOG (ENSUMAG00000023622)	MYOD1 (ENSUMAG00000023628) ##22	KCNC1 (ENSUMAG00000023629)	SERGEF (ENSUMAG00000023630)	TPH1 (ENSUMAG00000023633)	SAAL1 (ENSUMAG00000023648)	ENSUMAG00000000113
Giant Panda	MODERN SPECIES	7	CALCB (ENSAMEG00000001579)	ENSAMEG00000015132	INSC (ENSAMEG00000015118)	SOX6 (ENSAMEG00000015112)	C11orf58 (ENSAMEG00000002845)	PLEKHA7 (ENSAMEG00000002856)	ENSAMEG00000002891 ##23	ENSAMEG00000002895	PIK3C2A (ENSAMEG00000002916)	NUCB2 (ENSAMEG00000002982)	ENSAMEG00000003021	KCNJ11 (ENSAMEG00000019510)	ABCC8 (ENSAMEG00000003026)	USH1C (ENSAMEG00000003181)	OTOG (ENSAMEG00000003146)	MYOD1 (ENSAMEG00000018197) ##22	KCNC1 (ENSAMEG00000018198)	SERGEF (ENSAMEG00000028965)	TPH1 (ENSAMEG00000018200)	SAAL1 (ENSAMEG00000018204)	ENSAMEG00000024218	ENSAMEG00000023602	HPS5 (ENSAMEG00000017819)	GTF2H1 (ENSAMEG00000017836)	ENSAMEG00000017854	LDHC (ENSAMEG00000017872)	TSG101 (ENSAMEG00000017874)	UEVLD (ENSAMEG00000017885)	MISFA (ENSAMEG00000017904)	ENSAMEG00000028723	SPTY2D1 (ENSAMEG00000017906)
Mustelinae	ANCESTRAL SPECIES	30	ENSGT00940000166205	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.n	ENSGT00940000161479.e	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123
American mink	MODERN SPECIES	13	CYP2R1 (ENSNVIG00000020712)	CALCA (ENSNVIG00000020682)	CALCB (ENSNVIG00000020671)	INSC (ENSNVIG00000020515)	SOX6 (ENSNVIG00000020411)	C11orf58 (ENSNVIG00000020393)	PLEKHA7 (ENSNVIG00000020293)	RPS13 (ENSNVIG00000020246)	PIK3C2A (ENSNVIG00000020155)	NUCB2 (ENSNVIG00000020065)	B7H6 (ENSNVIG00000020028)	KCNJ11 (ENSNVIG00000020022)	ABCC8 (ENSNVIG00000019489)	USH1C (ENSNVIG00000019256)	OTOG (ENSNVIG00000019193)	MYOD1 (ENSNVIG00000019177) ##22	KCNC1 (ENSNVIG00000019159)	SERGEF (ENSNVIG00000019122)	TPH1 (ENSNVIG00000019049)	SAAL1 (ENSNVIG00000018995)	ENSNVIG00000018957	ENSNVIG00000018941	ENSNVIG00000018923	HPS5 (ENSNVIG00000018867)	TF2H1 (ENSNVIG00000018843)	ENSNVIG00000018827	LDHC (ENSNVIG00000018779)	ENSNVIG00000018751	UEVLD (ENSNVIG00000018596)	MISFA (ENSNVIG00000018586)	ENSNVIG00000018581
Ferret	MODERN SPECIES	194	ENSMPUG00000013259	CALCB (ENSMPUG00000013262)	INSC (ENSMPUG00000013267)	ENSMPUG00000013278	SOX6 (ENSMPUG00000013283)	C11orf58 (ENSMPUG00000013301)	PLEKHA7 (ENSMPUG00000013304)	ENSMPUG00000013316	PIK3C2A (ENSMPUG00000013343)	NUCB2 (ENSMPUG00000013355)	ENSMPUG00000013361	KCNJ11 (ENSMPUG00000019000)	ABCC8 (ENSMPUG00000013368)	USH1C (ENSMPUG00000013383)	OTOG (ENSMPUG00000013475)	MYOD1 (ENSMPUG00000013563) ##22	KCNC1 (ENSMPUG00000013565)	SERGEF (ENSMPUG00000013567)	TPH1 (ENSMPUG00000013571)	SAAL1 (ENSMPUG00000013717)	ENSMPUG00000013721	ENSMPUG00000013724	HPS5 (ENSMPUG00000013726)	GTF2H1 (ENSMPUG00000013729)	ENSMPUG00000013730	ENSMPUG00000013766	TSG101 (ENSMPUG00000013769)	UEVLD (ENSMPUG00000013774)	SPTY2D1 (ENSMPUG00000013816)	TMEM86A (ENSMPUG00000013825)	IGSF22 (ENSMPUG00000013835)
Canidae	ANCESTRAL SPECIES	1	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000175801	ENSGT00390000017491.s.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.m.a.f	ENSGT01030000235549	ENSGT00940000153201.j.n.j	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b
Canis_lupus	ANCESTRAL SPECIES	4	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687.e.b	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.a.b	ENSGT00940000175801	ENSGT00390000017491.t.u.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b.m	ENSGT00390000004737.b.a.o.a.a.a.a.c	ENSGT00390000004737.b.a.o.a.a.a.b.n.a	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.m.a.f	ENSGT01030000235549	ENSGT00940000153201.j.n.j	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b
Dingo	MODERN SPECIES	231	INSC (ENSCAFG00020017307)	SOX6 (ENSCAFG00020017327)	ENSCAFG00020017379	PLEKHA7 (ENSCAFG00020017394)	ENSCAFG00020017408	ENSCAFG00020017410	ENSCAFG00020017417	ENSCAFG00020017434	NUCB2 (ENSCAFG00020017444)	ENSCAFG00020017461	ENSCAFG00020017465	KCNJ11 (ENSCAFG00020017466)	ABCC8 (ENSCAFG00020017543)	USH1C (ENSCAFG00020018102)	OTOG (ENSCAFG00020018311)	MYOD1 (ENSCAFG00020018371) ##22	KCNC1 (ENSCAFG00020018373)	SERGEF (ENSCAFG00020018379)	TPH1 (ENSCAFG00020018391)	SAAL1 (ENSCAFG00020018406)	ENSCAFG00020018409	ENSCAFG00020018410	ENSCAFG00020018412	ENSCAFG00020018417	ENSCAFG00020018420	HPS5 (ENSCAFG00020018444)	GTF2H1 (ENSCAFG00020018689)	ENSCAFG00020018694	LDHC (ENSCAFG00020018722)	ENSCAFG00020018780	ENSCAFG00020018792
Dog	MODERN SPECIES	13	CRSP-2 (ENSCAFG00845023366)	CALCA (ENSCAFG00845023464)	INSC (ENSCAFG00845023608)	SOX6 (ENSCAFG00845024251)	C21H11orf58 (ENSCAFG00845025441)	PLEKHA7 (ENSCAFG00845025657)	RPS13 (ENSCAFG00845026930)	PIK3C2A (ENSCAFG00845027085)	ENSCAFG00845014128	NUCB2 (ENSCAFG00845014171)	ENSCAFG00845014205	KCNJ11 (ENSCAFG00845014223)	ABCC8 (ENSCAFG00845014269)	USH1C (ENSCAFG00845014411)	OTOG (ENSCAFG00845014610)	MYOD1 (ENSCAFG00845014938) ##22	KCNC1 (ENSCAFG00845014972)	SERGEF (ENSCAFG00845015032)	TPH1 (ENSCAFG00845015143)	SAAL1 (ENSCAFG00845015248)	ENSCAFG00845015397	SAA1 (ENSCAFG00845015494)	ENSCAFG00845015612	HPS5 (ENSCAFG00845015814)	GTF2H1 (ENSCAFG00845016048)	ENSCAFG00845016105	ENSCAFG00845016146	LDHC (ENSCAFG00845016401)	TSG101 (ENSCAFG00845016679)	UEVLD (ENSCAFG00845017016)	ENSCAFG00845017589
Red fox	MODERN SPECIES	70	ENSVVUG00000024222	CALCB (ENSVVUG00000024219)	ENSVVUG00000024218	INSC (ENSVVUG00000024215)	SOX6 (ENSVVUG00000024203)	ENSVVUG00000024192	PLEKHA7 (ENSVVUG00000024123)	RPS13 (ENSVVUG00000024098)	PIK3C2A (ENSVVUG00000024074)	NUCB2 (ENSVVUG00000024060)	ENSVVUG00000024057	KCNJ11 (ENSVVUG00000024056)	ABCC8 (ENSVVUG00000024039)	USH1C (ENSVVUG00000024033)	OTOG (ENSVVUG00000024003)	MYOD1 (ENSVVUG00000023995) ##22	KCNC1 (ENSVVUG00000023991)	SERGEF (ENSVVUG00000023986)	TPH1 (ENSVVUG00000023982)	SAAL1 (ENSVVUG00000023978)	ENSVVUG00000023973	ENSVVUG00000023969
Felidae	ANCESTRAL SPECIES		ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.j.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684.g	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.m.b	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084	ENSGT01050000247925	ENSGT01100000263734
Panthera	ANCESTRAL SPECIES	13	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.j.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684.g	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b.k	ENSGT00390000004737.b.a.o.a.a.a.a.h	ENSGT00390000004737.b.a.o.a.a.a.a.g	ENSGT00390000004737.b.a.o.a.a.a.b.l	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.m.b	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01100000263734
Panthera_a	ANCESTRAL SPECIES	20	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000162876	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.j.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684.g	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b.k	ENSGT00390000004737.b.a.o.a.a.a.a.h	ENSGT00390000004737.b.a.o.a.a.a.a.g	ENSGT00390000004737.b.a.o.a.a.a.b.l	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.m.b	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084
leopard	MODERN SPECIES	29	INSC (ENSPPRG00000016954)	ENSPPRG00000013736	SOX6 (ENSPPRG00000013207)	C11orf58 (ENSPPRG00000009350)	PLEKHA7 (ENSPPRG00000008439)	ENSPPRG00000005193	PIK3C2A (ENSPPRG00000004750)	ENSPPRG00000004343	NUCB2 (ENSPPRG00000003722)	ENSPPRG00000001436	ENSPPRG00000001001	KCNJ11 (ENSPPRG00000017642)	ABCC8 (ENSPPRG00000000376)	USH1C (ENSPPRG00000014239)	OTOG (ENSPPRG00000010741)	MYOD1 (ENSPPRG00000003796) ##22	KCNC1 (ENSPPRG00000003611)	SERGEF (ENSPPRG00000003386)	TPH1 (ENSPPRG00000001846)	SAAL1 (ENSPPRG00000001488)	ENSPPRG00000000993	ENSPPRG00000023577	ENSPPRG00000024065	ENSPPRG00000024363	HPS5 (ENSPPRG00000022226)	GTF2H1 (ENSPPRG00000020251)	ENSPPRG00000014382	LDHC (ENSPPRG00000010475)	ENSPPRG00000008586	ENSPPRG00000006170	TSG101 (ENSPPRG00000004620)
lion	MODERN SPECIES	10	CALCA (ENSPLOG00000009923)	INSC (ENSPLOG00000010032)	SOX6 (ENSPLOG00000010257)	ENSPLOG00000010453	C11orf58 (ENSPLOG00000010495)	PLEKHA7 (ENSPLOG00000010586)	RPS13 (ENSPLOG00000010890)	PIK3C2A (ENSPLOG00000010953)	ENSPLOG00000011047	NUCB2 (ENSPLOG00000011132)	ENSPLOG00000011439	KCNJ11 (ENSPLOG00000011463)	ABCC8 (ENSPLOG00000011679)	USH1C (ENSPLOG00000014009)	OTOG (ENSPLOG00000014950)	MYOD1 (ENSPLOG00000015478) ##22	KCNC1 (ENSPLOG00000015532)	SERGEF (ENSPLOG00000015624)	TPH1 (ENSPLOG00000015838)	SAAL1 (ENSPLOG00000015945)	ENSPLOG00000016007	ENSPLOG00000016063	HPS5 (ENSPLOG00000016112)	GTF2H1 (ENSPLOG00000016181)	ENSPLOG00000016282	LDHC (ENSPLOG00000016357)	TSG101 (ENSPLOG00000016477)	UEVLD (ENSPLOG00000016574)	MISFA (ENSPLOG00000016698)	ENSPLOG00000016726	SPTY2D1 (ENSPLOG00000016758)
Cat	MODERN SPECIES	241	ENSFCAG00000051414	CALCB (ENSFCAG00000034071)	INSC (ENSFCAG00000002733)	SOX6 (ENSFCAG00000002214)	CD1H11orf58 (ENSFCAG00000036407)	PLEKHA7 (ENSFCAG00000007029)	ENSFCAG00000033219	ENSFCAG00000042979	PIK3C2A (ENSFCAG00000023161)	NUCB2 (ENSFCAG00000007304)	NCR3LG1 (ENSFCAG00000023665)	KCNJ11 (ENSFCAG00000007305)	ABCC8 (ENSFCAG00000004967)	USH1C (ENSFCAG00000004971)	OTOG (ENSFCAG00000004972)	MYOD1 (ENSFCAG00000004973) ##22	KCNC1 (ENSFCAG00000004974)	SERGEF (ENSFCAG00000000209)	TPH1 (ENSFCAG00000025053)	SAAL1 (ENSFCAG00000000210)	ENSFCAG00000046392	ENSFCAG00000042268	HPS5 (ENSFCAG00000011158)	GTF2H1 (ENSFCAG00000007117)	LDHA (ENSFCAG00000015735)	LDHC (ENSFCAG00000034264)	TSG101 (ENSFCAG00000028742)	UEVLD (ENSFCAG00000015742)	MISFA (ENSFCAG00000035445)	ENSFCAG00000048198	SPTY2D1 (ENSFCAG00000015743)
Laurasiatheria_c	ANCESTRAL SPECIES	9	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b
Equus	ANCESTRAL SPECIES	40	ENSGT00940000162876	ENSGT00390000013819	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.b.e	ENSGT01030000234639.A.b.a.b.a.b.b.e.b.a	ENSGT00390000004737.b.a.o.a.a.b.eb.b	ENSGT00390000004737.b.a.o.a.a.b.fb.a	ENSGT00390000004737.b.a.o.a.b.f.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000153903.a.a
Donkey	MODERN SPECIES	12	ENSEASG00005027691	ENSEASG00005030327	CALCB (ENSEASG00005006012)	INSC (ENSEASG00005006018)	SOX6 (ENSEASG00005006024)	C11orf58 (ENSEASG00005033834)	PLEKHA7 (ENSEASG00005006038)	ENSEASG00005006041	PIK3C2A (ENSEASG00005006116)	NUCB2 (ENSEASG00005006907)	ENSEASG00005006925	KCNJ11 (ENSEASG00005032263)	ABCC8 (ENSEASG00005007029)	USH1C (ENSEASG00005007566)	OTOG (ENSEASG00005007567)	MYOD1 (ENSEASG00005007569) ##22	KCNC1 (ENSEASG00005007570)	SERGEF (ENSEASG00005007572)	TPH1 (ENSEASG00005007573)	ENSEASG00005007574	ENSEASG00005007576	ENSEASG00005023828	ENSEASG00005030092	ENSEASG00005034187	ENSEASG00005031856	ENSEASG00005012966	ENSEASG00005037086	ENSEASG00005035911	ENSEASG00005035302	ENSEASG00005026588	HPS5 (ENSEASG00005012900)
Horse	MODERN SPECIES	28	ENSECAG00000008669	ENSECAG00000008818	INSC (ENSECAG00000009559)	SOX6 (ENSECAG00000010880)	ENSECAG00000050226	C7H11orf58 (ENSECAG00000011778)	PLEKHA7 (ENSECAG00000011848)	RPS13 (ENSECAG00000014928)	PIK3C2A (ENSECAG00000014963)	NUCB2 (ENSECAG00000016586)	ENSECAG00000054585	KCNJ11 (ENSECAG00000001643)	ABCC8 (ENSECAG00000020074)	USH1C (ENSECAG00000024745)	OTOG (ENSECAG00000025047)	MYOD1 (ENSECAG00000002132) ##22	KCNC1 (ENSECAG00000002236)	SERGEF (ENSECAG00000056096)	SERGEF (ENSECAG00000005626)	SAAL1 (ENSECAG00000009781)	ENSECAG00000011404	ENSECAG00000032096	ENSECAG00000030592	ENSECAG00000013758	ENSECAG00000034393	ENSECAG00000048632	ENSECAG00000036499	HPS5 (ENSECAG00000015720)	GTF2H1 (ENSECAG00000019056)	LDHA (ENSECAG00000020669)	LDHC (ENSECAG00000022126)
Chiroptera	ANCESTRAL SPECIES	5	ENSGT00940000162876	ENSGT00940000156267	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b
Microchiroptera	ANCESTRAL SPECIES	31	ENSGT00940000162876	ENSGT00940000156267	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000163242.a	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b
Greater horseshoe bat	MODERN SPECIES	2	ENSRFEG00010021391	INSC (ENSRFEG00010021354)	SOX6 (ENSRFEG00010021298)	ENSRFEG00010021282	C11orf58 (ENSRFEG00010021253)	PLEKHA7 (ENSRFEG00010021179)	ENSRFEG00010021136	PIK3C2A (ENSRFEG00010021091)	NUCB2 (ENSRFEG00010021004)	ENSRFEG00010020981	KCNJ11 (ENSRFEG00010020978)	ENSRFEG00010020967	ABCC8 (ENSRFEG00010020943)	USH1C (ENSRFEG00010020886)	OTOG (ENSRFEG00010020852)	MYOD1 (ENSRFEG00010020830) ##22	KCNC1 (ENSRFEG00010020809)	ENSRFEG00010020796	SERGEF (ENSRFEG00010020728)	TPH1 (ENSRFEG00010020684)	SAAL1 (ENSRFEG00010020641)	ENSRFEG00010020599	ENSRFEG00010020584	ENSRFEG00010020556	ENSRFEG00010020515	HPS5 (ENSRFEG00010020475)	GTF2H1 (ENSRFEG00010020416)	ENSRFEG00010020271	LDHC (ENSRFEG00010020017)	ENSRFEG00010019955	ENSRFEG00010019776
Microbat	MODERN SPECIES	1061		ENSMLUG00000009029	SOX6 (ENSMLUG00000007911)	C11orf58 (ENSMLUG00000001589)	PLEKHA7 (ENSMLUG00000001591)	ENSMLUG00000009751	PIK3C2A (ENSMLUG00000007089)	ENSMLUG00000029239	ENSMLUG00000024625	KCNJ11 (ENSMLUG00000012273)	NUCB2 (ENSMLUG00000004101)	ABCC8 (ENSMLUG00000012276)	USH1C (ENSMLUG00000002529)	OTOG (ENSMLUG00000002545)	ENSMLUG00000029772	MYOD1 (ENSMLUG00000007940) ##22	KCNC1 (ENSMLUG00000007950)	ENSMLUG00000007974	TPH1 (ENSMLUG00000008011)	SAAL1 (ENSMLUG00000008022)	ENSMLUG00000028709	ENSMLUG00000016314	ENSMLUG00000008051	HPS5 (ENSMLUG00000016318)	GTF2H1 (ENSMLUG00000016329)	ENSMLUG00000016343	LDHC (ENSMLUG00000016348)	TSG101 (ENSMLUG00000016353)	UEVLD (ENSMLUG00000016358)	ENSMLUG00000027941	TMEM86A (ENSMLUG00000016391)
Megabat	MODERN SPECIES	2033								PLEKHA7 (ENSPVAG00000012804)	RPS13 (ENSPVAG00000012806)	PIK3C2A (ENSPVAG00000012807)	NUCB2 (ENSPVAG00000012810)	ENSPVAG00000012812	ABCC8 (ENSPVAG00000012814)	USH1C (ENSPVAG00000012818)	OTOG (ENSPVAG00000012824)	MYOD1 (ENSPVAG00000012829) ##22	KCNC1 (ENSPVAG00000012831)	SERGEF (ENSPVAG00000012835)	TPH1 (ENSPVAG00000012838)	SAAL1 (ENSPVAG00000012842)	ENSPVAG00000012844
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000182959.b.b ##22
Common shrew	MODERN SPECIES	12629																MYOD1 (ENSSARG00000002401) ##22
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.l	ENSGT01030000235549	ENSGT00940000153201.j.k.a.b	ENSGT00940000153201.j.k.a.a.b	ENSGT00940000161479	ENSGT00940000164064
Primates	ANCESTRAL SPECIES		ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.k.a.a.b	ENSGT01030000235549	ENSGT00940000153201.j.k.a.b	ENSGT00940000153201.j.k.a.a.a.a	ENSGT00940000161479	ENSGT00940000164064
Strepsirrhini	ANCESTRAL SPECIES	6	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155818	ENSGT00390000015066	ENSGT01030000235549	ENSGT00940000153201.j.k.a.b	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b
Lemuriformes	ANCESTRAL SPECIES	16	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155818	ENSGT00390000015066	ENSGT01030000235549	ENSGT00940000153201.j.k.a.b	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b
Lemuriformes_a	ANCESTRAL SPECIES	24	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.k.a.b	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01100000263734	ENSGT00940000154133.A
Coquerels sifaka	MODERN SPECIES	591	CYP2R1 (ENSPCOG00000017738)	ENSPCOG00000014163	CALCB (ENSPCOG00000025246)	INSC (ENSPCOG00000024807)	SOX6 (ENSPCOG00000008289)	C11orf58 (ENSPCOG00000012109)	ENSPCOG00000016080	PLEKHA7 (ENSPCOG00000020850)	ENSPCOG00000024432	PIK3C2A (ENSPCOG00000009463)	ENSPCOG00000015410	KCNJ11 (ENSPCOG00000009073)	ABCC8 (ENSPCOG00000018480)	USH1C (ENSPCOG00000024567)	OTOG (ENSPCOG00000023596)	MYOD1 (ENSPCOG00000028149) ##22	KCNC1 (ENSPCOG00000028118)	SERGEF (ENSPCOG00000015228)	TPH1 (ENSPCOG00000022787)	SAAL1 (ENSPCOG00000013362)	ENSPCOG00000023938	ENSPCOG00000008984	SAA4 (ENSPCOG00000014650)	HPS5 (ENSPCOG00000018482)	GTF2H1 (ENSPCOG00000016794)	ENSPCOG00000025606	ENSPCOG00000022047	TSG101 (ENSPCOG00000022058)	UEVLD (ENSPCOG00000016777)	ENSPCOG00000015051	SPTY2D1 (ENSPCOG00000020606)
Greater bamboo lemur	MODERN SPECIES	708				CALCB (ENSPSMG00000008444)	INSC (ENSPSMG00000008493)	SOX6 (ENSPSMG00000008573)	ENSPSMG00000008607	PLEKHA7 (ENSPSMG00000008661)	ENSPSMG00000008669	PIK3C2A (ENSPSMG00000008738)	NUCB2 (ENSPSMG00000008836)	KCNJ11 (ENSPSMG00000008899)	ABCC8 (ENSPSMG00000009601)	USH1C (ENSPSMG00000010622)	OTOG (ENSPSMG00000010669)	MYOD1 (ENSPSMG00000010680) ##22	KCNC1 (ENSPSMG00000010686)	SERGEF (ENSPSMG00000010715)	TPH1 (ENSPSMG00000010741)	SAAL1 (ENSPSMG00000010764)	ENSPSMG00000010777
Mouse lemur	MODERN SPECIES	27	CYP2R1 (ENSMICG00000031499)	CALCA (ENSMICG00000036545)	CALCB (ENSMICG00000044384)	INSC (ENSMICG00000008907)	SOX6 (ENSMICG00000027413)	ENSMICG00000027883	PLEKHA7 (ENSMICG00000003710)	ENSMICG00000031241	PIK3C2A (ENSMICG00000003718)	ENSMICG00000037789	NUCB2 (ENSMICG00000005512)	KCNJ11 (ENSMICG00000005520)	ABCC8 (ENSMICG00000005522)	USH1C (ENSMICG00000005547)	OTOG (ENSMICG00000005555)	MYOD1 (ENSMICG00000005566) ##22	KCNC1 (ENSMICG00000005569)	SERGEF (ENSMICG00000005579)	TPH1 (ENSMICG00000005586)	SAAL1 (ENSMICG00000005592)	ENSMICG00000042509	ENSMICG00000042946	ENSMICG00000005619	SAA4 (ENSMICG00000036934)	HPS5 (ENSMICG00000005626)	GTF2H1 (ENSMICG00000009467)	ENSMICG00000036424	LDHA (ENSMICG00000029727)	LDHC (ENSMICG00000009475)	LDHAL6A (ENSMICG00000008876)	TSG101 (ENSMICG00000008879)
Bushbaby	MODERN SPECIES	116	ENSOGAG00000017129	ENSOGAG00000009052	INSC (ENSOGAG00000000628)	SOX6 (ENSOGAG00000005358)	C11orf58 (ENSOGAG00000025335)	PLEKHA7 (ENSOGAG00000013719)	RPS13 (ENSOGAG00000002128)	PIK3C2A (ENSOGAG00000002129)	ENSOGAG00000028675	NUCB2 (ENSOGAG00000006094)	ENSOGAG00000032142	KCNJ11 (ENSOGAG00000029803)	ABCC8 (ENSOGAG00000006103)	USH1C (ENSOGAG00000006113)	OTOG (ENSOGAG00000033908)	MYOD1 (ENSOGAG00000029784) ##22	KCNC1 (ENSOGAG00000011185)	SERGEF (ENSOGAG00000011195)	TPH1 (ENSOGAG00000011200)	SAAL1 (ENSOGAG00000011202)	ENSOGAG00000029424	ENSOGAG00000027885	ENSOGAG00000011206	HPS5 (ENSOGAG00000011208)	GTF2H1 (ENSOGAG00000000710)	LDHC (ENSOGAG00000003725)	LDHAL6A (ENSOGAG00000009261)	TSG101 (ENSOGAG00000009264)	ENSOGAG00000009268	SPTY2D1 (ENSOGAG00000031814)	TMEM86A (ENSOGAG00000004415)
Haplorrhini	ANCESTRAL SPECIES		ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.k.a.a.b	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01100000263734	ENSGT01050000245084
Tarsier	MODERN SPECIES	859																MYOD1 (ENSTSYG00000014042) ##22
Simiiformes	ANCESTRAL SPECIES		ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.k.a.a.b	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01100000263734	ENSGT00940000154133.A
Platyrrhini	ANCESTRAL SPECIES	3	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687.v	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687.u	ENSGT00940000155817.a.a	ENSGT00440000038603.n	ENSGT00390000017491.s.a.a.e	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155622.g	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.k.a.a.a.a.f.a	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a	ENSGT00940000154770.q.b	ENSGT00940000153903.a.b.b
Cebidae	ANCESTRAL SPECIES		ENSGT00940000162876	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687.v	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687.u	ENSGT00940000155817.a.a	ENSGT00440000038603.n	ENSGT00390000017491.s.a.a.e	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155622.g	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.k.a.a.a.a.f.a	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a	ENSGT00940000154770.q.b	ENSGT00940000153903.a.b.b
Marmoset	MODERN SPECIES	2	CALCB (ENSCJAG00000072821)	INSC (ENSCJAG00000009705)	ENSCJAG00000084026	SOX6 (ENSCJAG00000009643)	ENSCJAG00000080150	C11orf58 (ENSCJAG00000041748)	PLEKHA7 (ENSCJAG00000009589)	ENSCJAG00000080001	ENSCJAG00000009564	PIK3C2A (ENSCJAG00000009472)	NUCB2 (ENSCJAG00000009422)	KCNJ11 (ENSCJAG00000048022)	ABCC8 (ENSCJAG00000009368)	USH1C (ENSCJAG00000009310)	OTOG (ENSCJAG00000009263)	MYOD1 (ENSCJAG00000009258) ##22	KCNC1 (ENSCJAG00000007290)	ENSCJAG00000007283	ENSCJAG00000043934	SAA4 (ENSCJAG00000007213)	ENSCJAG00000081433	ENSCJAG00000007204	HPS5 (ENSCJAG00000007185)	ENSCJAG00000074922	GTF2H1 (ENSCJAG00000007129)	LDHC (ENSCJAG00000007081)	ENSCJAG00000080933	LDHAL6A (ENSCJAG00000007067)	TSG101 (ENSCJAG00000086769)	UEVLD (ENSCJAG00000007006)	ENSCJAG00000075110
Cebidae_a	ANCESTRAL SPECIES	10	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687.v	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687.u	ENSGT00940000155817.a.a	ENSGT00440000038603.n	ENSGT00390000017491.s.a.a.e	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155622.g	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.k.a.a.a.a.f.a.a	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a	ENSGT00940000154770.q.b	ENSGT00940000153903.a.b.b
Bolivian squirrel monkey	MODERN SPECIES	42	CYP2R1 (ENSSBOG00000025157)	ENSSBOG00000032369	CALCB (ENSSBOG00000034921)	INSC (ENSSBOG00000010393)	SOX6 (ENSSBOG00000032558)	C11orf58 (ENSSBOG00000024393)	PLEKHA7 (ENSSBOG00000035289)	ENSSBOG00000029329	RPS13 (ENSSBOG00000031967)	PIK3C2A (ENSSBOG00000020550)	NUCB2 (ENSSBOG00000022407)	KCNJ11 (ENSSBOG00000016143)	ABCC8 (ENSSBOG00000021007)	USH1C (ENSSBOG00000030041)	OTOG (ENSSBOG00000031057)	MYOD1 (ENSSBOG00000032168) ##22	KCNC1 (ENSSBOG00000032934)	SERGEF (ENSSBOG00000021636)	TPH1 (ENSSBOG00000021704)	SAAL1 (ENSSBOG00000000873)	SAA4 (ENSSBOG00000035220)	ENSSBOG00000025130	HPS5 (ENSSBOG00000034848)	GTF2H1 (ENSSBOG00000035194)	ENSSBOG00000023979	LDHC (ENSSBOG00000029573)	LDHAL6A (ENSSBOG00000032789)	TSG101 (ENSSBOG00000032898)	ENSSBOG00000016234	ENSSBOG00000023915	UEVLD (ENSSBOG00000020574)
Capuchin	MODERN SPECIES	39	ENSCCAG00000022131	CALCB (ENSCCAG00000036279)	INSC (ENSCCAG00000028591)	SOX6 (ENSCCAG00000034832)	ENSCCAG00000035901	ENSCCAG00000037894	PLEKHA7 (ENSCCAG00000030437)	ENSCCAG00000031641	RPS13 (ENSCCAG00000022959)	PIK3C2A (ENSCCAG00000034614)	NUCB2 (ENSCCAG00000029832)	KCNJ11 (ENSCCAG00000019232)	ABCC8 (ENSCCAG00000029653)	USH1C (ENSCCAG00000030798)	OTOG (ENSCCAG00000027583)	MYOD1 (ENSCCAG00000036433) ##22	KCNC1 (ENSCCAG00000033090)	SERGEF (ENSCCAG00000037352)	TPH1 (ENSCCAG00000023915)	SAAL1 (ENSCCAG00000025101)	ENSCCAG00000022385	SAA4 (ENSCCAG00000025050)	ENSCCAG00000024041	ENSCCAG00000024577	HPS5 (ENSCCAG00000032081)	GTF2H1 (ENSCCAG00000028407)	ENSCCAG00000028937	ENSCCAG00000029060	LDHC (ENSCCAG00000031200)	LDHAL6A (ENSCCAG00000031041)	ENSCCAG00000020722
Mas night monkey	MODERN SPECIES	830	INSC (ENSANAG00000024858)	ENSANAG00000028387	SOX6 (ENSANAG00000029702)	C11orf58 (ENSANAG00000027455)	PLEKHA7 (ENSANAG00000015437)	ENSANAG00000028185	RPS13 (ENSANAG00000026703)	ENSANAG00000029343	PIK3C2A (ENSANAG00000036198)	NUCB2 (ENSANAG00000033132)	NCR3LG1 (ENSANAG00000021049)	KCNJ11 (ENSANAG00000017323)	ABCC8 (ENSANAG00000034619)	USH1C (ENSANAG00000033372)	OTOG (ENSANAG00000035931)	MYOD1 (ENSANAG00000032905) ##22	KCNC1 (ENSANAG00000034875)	SERGEF (ENSANAG00000036496)	TPH1 (ENSANAG00000018818)	SAAL1 (ENSANAG00000036857)	ENSANAG00000021597	SAA4 (ENSANAG00000020818)	ENSANAG00000021057	HPS5 (ENSANAG00000018225)	GTF2H1 (ENSANAG00000023697)	ENSANAG00000037705	LDHC (ENSANAG00000037671)	LDHAL6A (ENSANAG00000023203)	TSG101 (ENSANAG00000019676)	ENSANAG00000022035	UEVLD (ENSANAG00000027080)
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b	ENSGT00940000155622.f	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066.c	ENSGT00940000153201.j.k.a.a.b	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00390000000566.q.a.a	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b	ENSGT00940000155622.f	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.b.c.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066.c	ENSGT00940000153201.j.k.a.a.b	ENSGT00940000161479	ENSGT00940000164064
Hominidae	ANCESTRAL SPECIES	1	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00390000000566.q.a.a	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b	ENSGT00940000155622.f	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.b.c.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066.c	ENSGT00940000153201.j.k.a.a.b	ENSGT00940000161479	ENSGT00940000164064
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	20	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687.w.a	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00390000000566.q.a.a	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b	ENSGT00940000155182.b.e.b	ENSGT00940000155622.f	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.b.c.b	ENSGT00390000004737.b.a.o.a.a.b.db	ENSGT00940000155818	ENSGT00390000015066.c	ENSGT00940000153201.j.k.a.a.b	ENSGT00940000161479
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687.w.a	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00390000000566.q.a.a	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b	ENSGT00940000155182.b.e.b	ENSGT00940000155622.f	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.b.c.b	ENSGT00390000004737.b.a.o.a.a.b.cb.a	ENSGT00940000155818	ENSGT00390000015066.c	ENSGT00940000153201.j.k.a.a.b	ENSGT00940000161479
Pan	ANCESTRAL SPECIES	1	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687.w.a	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00390000000566.q.a.a	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b	ENSGT00940000155182.b.e.b	ENSGT00940000155622.f	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.b.c.b	ENSGT00390000001347.wb	ENSGT00390000004737.b.a.o.a.a.b.cb.a	ENSGT00940000155818	ENSGT00390000015066.c	ENSGT00940000153201.j.k.a.a.b
Chimpanzee	MODERN SPECIES	2	CALCB (ENSPTRG00000003390)	INSC (ENSPTRG00000003391)	SOX6 (ENSPTRG00000003393)	ENSPTRG00000043419	C11H11orf58 (ENSPTRG00000044196)	PLEKHA7 (ENSPTRG00000003396)	RPS13 (ENSPTRG00000044626)	PIK3C2A (ENSPTRG00000003399)	NUCB2 (ENSPTRG00000003400)	NCR3LG1 (ENSPTRG00000003401)	KCNJ11 (ENSPTRG00000028707)	ABCC8 (ENSPTRG00000003403)	ENSPTRG00000048594	USH1C (ENSPTRG00000003404)	OTOG (ENSPTRG00000003405)	MYOD1 (ENSPTRG00000003406) ##22	KCNC1 (ENSPTRG00000003407)	SERGEF (ENSPTRG00000003408)	TPH1 (ENSPTRG00000003409)	SAAL1 (ENSPTRG00000003410)	MRGPRX3 (ENSPTRG00000052640)	MRGPRX4 (ENSPTRG00000045402)	ENSPTRG00000039747	ENSPTRG00000050361	SAA4 (ENSPTRG00000003415)	SAA2 (ENSPTRG00000003416)	ENSPTRG00000052833	SAA1 (ENSPTRG00000022627)	HPS5 (ENSPTRG00000003419)	GTF2H1 (ENSPTRG00000003420)	LDHA (ENSPTRG00000003421)
Bonobo	MODERN SPECIES	2	CALCB (ENSPPAG00000039474)	INSC (ENSPPAG00000039229)	SOX6 (ENSPPAG00000037103)	ENSPPAG00000035221	C11orf58 (ENSPPAG00000035335)	PLEKHA7 (ENSPPAG00000041353)	ENSPPAG00000039874	PIK3C2A (ENSPPAG00000039156)	NUCB2 (ENSPPAG00000041653)	NCR3LG1 (ENSPPAG00000038825)	KCNJ11 (ENSPPAG00000016577)	ABCC8 (ENSPPAG00000026555)	ENSPPAG00000035879	USH1C (ENSPPAG00000028696)	OTOG (ENSPPAG00000027834)	MYOD1 (ENSPPAG00000036477) ##22	KCNC1 (ENSPPAG00000006765)	ENSPPAG00000041411	TPH1 (ENSPPAG00000038830)	SAAL1 (ENSPPAG00000035982)	MRGPRX3 (ENSPPAG00000011150)	MRGPRX4 (ENSPPAG00000008504)	ENSPPAG00000039649	SAA4 (ENSPPAG00000036586)	ENSPPAG00000031094	ENSPPAG00000041426	SAA1 (ENSPPAG00000039165)	HPS5 (ENSPPAG00000039372)	GTF2H1 (ENSPPAG00000029804)	LDHA (ENSPPAG00000043477)	LDHC (ENSPPAG00000038065)
Human	MODERN SPECIES	2	CYP2R1 (ENSG00000186104)	CALCB (ENSG00000175868)	CALCA (ENSG00000110680)	INSC (ENSG00000188487)	SOX6 (ENSG00000110693)	C11orf58 (ENSG00000110696)	PLEKHA7 (ENSG00000166689)	RPS13 (ENSG00000110700)	PIK3C2A (ENSG00000011405)	NUCB2 (ENSG00000070081)	NCR3LG1 (ENSG00000188211)	KCNJ11 (ENSG00000187486)	ABCC8 (ENSG00000006071)	USH1C (ENSG00000006611)	OTOG (ENSG00000188162)	MYOD1 (ENSG00000129152) ##22	KCNC1 (ENSG00000129159)	SERGEF (ENSG00000129158)	TPH1 (ENSG00000129167)	SAAL1 (ENSG00000166788)	MRGPRX3 (ENSG00000179826)	MRGPRX4 (ENSG00000179817)	SAA4 (ENSG00000148965)	SAA2-SAA4 (ENSG00000255071)	SAA2 (ENSG00000134339)	SAA1 (ENSG00000173432)	HPS5 (ENSG00000110756)	GTF2H1 (ENSG00000110768)	LDHA (ENSG00000134333)	LDHC (ENSG00000166796)	LDHAL6A (ENSG00000166800)
Gorilla	MODERN SPECIES	2	CALCA (ENSGGOG00000014148)	CALCB (ENSGGOG00000000799)	INSC (ENSGGOG00000002992)	SOX6 (ENSGGOG00000010884)	ENSGGOG00000022363	PLEKHA7 (ENSGGOG00000006435)	RPS13 (ENSGGOG00000007450)	PIK3C2A (ENSGGOG00000011040)	NUCB2 (ENSGGOG00000005914)	NCR3LG1 (ENSGGOG00000022788)	KCNJ11 (ENSGGOG00000003700)	ABCC8 (ENSGGOG00000015972)	ENSGGOG00000039510	USH1C (ENSGGOG00000016001)	OTOG (ENSGGOG00000016024)	MYOD1 (ENSGGOG00000008222) ##22	KCNC1 (ENSGGOG00000015717)	SERGEF (ENSGGOG00000000685)	TPH1 (ENSGGOG00000009041)	MRGPRX4 (ENSGGOG00000016538)	ENSGGOG00000039414	ENSGGOG00000025669	SAA4 (ENSGGOG00000003359)	SAA2 (ENSGGOG00000010301)	ENSGGOG00000010297	ENSGGOG00000006531	HPS5 (ENSGGOG00000010309)	GTF2H1 (ENSGGOG00000008405)	LDHA (ENSGGOG00000010350)	LDHC (ENSGGOG00000015884)	LDHAL6A (ENSGGOG00000039584)
Orangutan	MODERN SPECIES	2	ENSPPYG00000041260	CALCA (ENSPPYG00000025911)	CALCB (ENSPPYG00000003461)	INSC (ENSPPYG00000003460)	SOX6 (ENSPPYG00000003459)	C11H11orf58 (ENSPPYG00000003458)	PLEKHA7 (ENSPPYG00000003457)	ENSPPYG00000036022	PIK3C2A (ENSPPYG00000003455)	NUCB2 (ENSPPYG00000003454)	NCR3LG1 (ENSPPYG00000003453)	KCNJ11 (ENSPPYG00000003452)	ABCC8 (ENSPPYG00000004122)	USH1C (ENSPPYG00000003451)	OTOG (ENSPPYG00000003450)	MYOD1 (ENSPPYG00000003449) ##22	KCNC1 (ENSPPYG00000003448)	SERGEF (ENSPPYG00000003446)	TPH1 (ENSPPYG00000003445)	SAAL1 (ENSPPYG00000039447)	MRGPRX3 (ENSPPYG00000038501)	ENSPPYG00000003442	MRGPRX4 (ENSPPYG00000039348)	SAA4 (ENSPPYG00000031722)	SAA2 (ENSPPYG00000003440)	ENSPPYG00000036972	HPS5 (ENSPPYG00000003439)	GTF2H1 (ENSPPYG00000003438)	LDHA (ENSPPYG00000003437)	LDHC (ENSPPYG00000003436)	LDHAL6A (ENSPPYG00000003435)
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b	ENSGT00940000155622.f	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066.c	ENSGT00940000153201.j.k.a.a.b.a.a.a.b	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a
Rhinopithecus	ANCESTRAL SPECIES	465											ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b
Black snub-nosed monkey	MODERN SPECIES	54											NUCB2 (ENSRBIG00000026384)	KCNJ11 (ENSRBIG00000017895)	ABCC8 (ENSRBIG00000028087)	USH1C (ENSRBIG00000032711)	OTOG (ENSRBIG00000038420)	MYOD1 (ENSRBIG00000031582) ##22	KCNC1 (ENSRBIG00000023874)	SERGEF (ENSRBIG00000030422)	TPH1 (ENSRBIG00000008098)	SAAL1 (ENSRBIG00000031243)	ENSRBIG00000041399	MRGPRX3 (ENSRBIG00000044341)	SAA4 (ENSRBIG00000043432)
Golden snub-nosed monkey	MODERN SPECIES	1485											NUCB2 (ENSRROG00000041737)	KCNJ11 (ENSRROG00000027035)	ABCC8 (ENSRROG00000038913)	USH1C (ENSRROG00000043583)	OTOG (ENSRROG00000031218)	MYOD1 (ENSRROG00000038327) ##22	KCNC1 (ENSRROG00000025905)	SERGEF (ENSRROG00000044406)	TPH1 (ENSRROG00000040674)	SAAL1 (ENSRROG00000035972)	ENSRROG00000042459	MRGPRX3 (ENSRROG00000022175)	ENSRROG00000030356	SAA4 (ENSRROG00000041678)	ENSRROG00000032522	HPS5 (ENSRROG00000045543)	GTF2H1 (ENSRROG00000044245)	ENSRROG00000034244	LDHC (ENSRROG00000025865)	ENSRROG00000029002	LDHAL6A (ENSRROG00000041316)
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066.c	ENSGT00940000153201.j.k.a.a.b.a.a.a.b	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a
Vervet Monkey	MODERN SPECIES		CALCA (ENSCSAG00000004733)	CALCB (ENSCSAG00000004739)	INSC (ENSCSAG00000004745)	SOX6 (ENSCSAG00000004751)	ENSCSAG00000019325	C11orf58 (ENSCSAG00000004755)	PLEKHA7 (ENSCSAG00000004758)	ENSCSAG00000004762	PIK3C2A (ENSCSAG00000004784)	NUCB2 (ENSCSAG00000004802)	NCR3LG1 (ENSCSAG00000004804)	KCNJ11 (ENSCSAG00000019324)	ABCC8 (ENSCSAG00000004854)	USH1C (ENSCSAG00000004871)	OTOG (ENSCSAG00000004909)	MYOD1 (ENSCSAG00000004934) ##22	KCNC1 (ENSCSAG00000004936)	SERGEF (ENSCSAG00000004946)	TPH1 (ENSCSAG00000004950)	SAAL1 (ENSCSAG00000004954)	ENSCSAG00000019323	ENSCSAG00000004958	MRGPRX4 (ENSCSAG00000004961)	SAA4 (ENSCSAG00000004962)	ENSCSAG00000004965	ENSCSAG00000004969	HPS5 (ENSCSAG00000005000)	GTF2H1 (ENSCSAG00000005008)	ENSCSAG00000005035	LDHC (ENSCSAG00000005043)	LDHAL6A (ENSCSAG00000005046)
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066.c	ENSGT00940000153201.j.k.a.a.b.a.a.a.b	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b
Cercopithecinae_b	ANCESTRAL SPECIES	27	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.a	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b.x	ENSGT00390000004737.b.a.o.a.a.b.y	ENSGT00940000155818	ENSGT00390000015066.c	ENSGT00940000153201.j.k.a.a.b.a.a.a.b	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a
Olive baboon	MODERN SPECIES	3	CALCA (ENSPANG00000038842)	INSC (ENSPANG00000010410)	SOX6 (ENSPANG00000025558)	ENSPANG00000013057	ENSPANG00000044173	C11orf58 (ENSPANG00000004515)	PLEKHA7 (ENSPANG00000018146)	ENSPANG00000033142	PIK3C2A (ENSPANG00000015538)	NUCB2 (ENSPANG00000002503)	KCNJ11 (ENSPANG00000016190)	ABCC8 (ENSPANG00000007182)	USH1C (ENSPANG00000020256)	OTOG (ENSPANG00000010378)	ENSPANG00000045614	MYOD1 (ENSPANG00000011946) ##22	KCNC1 (ENSPANG00000015328)	SERGEF (ENSPANG00000025793)	TPH1 (ENSPANG00000007046)	SAAL1 (ENSPANG00000006539)	ENSPANG00000044809	ENSPANG00000040114	SAA4 (ENSPANG00000012057)	ENSPANG00000025709	HPS5 (ENSPANG00000000205)	GTF2H1 (ENSPANG00000002504)	LDHA (ENSPANG00000019081)	LDHC (ENSPANG00000025849)	ENSPANG00000047131	LDHAL6A (ENSPANG00000008347)	TSG101 (ENSPANG00000005375)
Cercopithecinae_d	ANCESTRAL SPECIES	99	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b.x	ENSGT00390000004737.b.a.o.a.a.b.y	ENSGT00940000155818	ENSGT00390000015066.c	ENSGT00940000153201.j.k.a.a.b.a.a.a.a	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01100000263734
Sooty mangabey	MODERN SPECIES	290								ENSCATG00000044705	PIK3C2A (ENSCATG00000010874)	NUCB2 (ENSCATG00000043820)	ENSCATG00000029541	KCNJ11 (ENSCATG00000022849)	ABCC8 (ENSCATG00000031694)	USH1C (ENSCATG00000025153)	OTOG (ENSCATG00000036498)	MYOD1 (ENSCATG00000031639) ##22	KCNC1 (ENSCATG00000031951)	SERGEF (ENSCATG00000039738)	TPH1 (ENSCATG00000040162)	SAAL1 (ENSCATG00000028077)	SAA4 (ENSCATG00000033584)	ENSCATG00000043701	ENSCATG00000031928	HPS5 (ENSCATG00000035219)	GTF2H1 (ENSCATG00000035696)	ENSCATG00000039048	LDHAL6A (ENSCATG00000032545)	TSG101 (ENSCATG00000009882)	UEVLD (ENSCATG00000038967)	ENSCATG00000033511	SPTY2D1 (ENSCATG00000036164)
Drill	MODERN SPECIES	1100							C11orf58 (ENSMLEG00000006504)	PLEKHA7 (ENSMLEG00000038628)	RPS13 (ENSMLEG00000035302)	PIK3C2A (ENSMLEG00000039652)	NUCB2 (ENSMLEG00000032247)	KCNJ11 (ENSMLEG00000005939)	ABCC8 (ENSMLEG00000004767)	USH1C (ENSMLEG00000038490)	OTOG (ENSMLEG00000027393)	MYOD1 (ENSMLEG00000031495) ##22	KCNC1 (ENSMLEG00000033839)	SERGEF (ENSMLEG00000042345)	TPH1 (ENSMLEG00000032014)	SAAL1 (ENSMLEG00000012869)	SAA4 (ENSMLEG00000032527)	ENSMLEG00000028895	ENSMLEG00000028344	HPS5 (ENSMLEG00000035748)	GTF2H1 (ENSMLEG00000042426)	ENSMLEG00000003699	LDHC (ENSMLEG00000028242)	LDHAL6A (ENSMLEG00000041786)	TSG101 (ENSMLEG00000036515)
Macaca	ANCESTRAL SPECIES	2	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b.w	ENSGT00390000004737.b.a.o.a.a.b.v	ENSGT00940000155818	ENSGT00390000015066.c	ENSGT00940000153201.j.k.a.a.b.a.a.a.a	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a
Pig-tailed macaque	MODERN SPECIES	131	CALCA (ENSMNEG00000041856)	CALCB (ENSMNEG00000033056)	INSC (ENSMNEG00000041648)	SOX6 (ENSMNEG00000015482)	ENSMNEG00000020819	C11orf58 (ENSMNEG00000039475)	PLEKHA7 (ENSMNEG00000042391)	ENSMNEG00000043614	PIK3C2A (ENSMNEG00000031943)	NUCB2 (ENSMNEG00000036376)	NCR3LG1 (ENSMNEG00000000053)	KCNJ11 (ENSMNEG00000023626)	ABCC8 (ENSMNEG00000018051)	USH1C (ENSMNEG00000012077)	OTOG (ENSMNEG00000040832)	MYOD1 (ENSMNEG00000044032) ##22	KCNC1 (ENSMNEG00000029034)	SERGEF (ENSMNEG00000043939)	TPH1 (ENSMNEG00000028667)	SAAL1 (ENSMNEG00000021954)	ENSMNEG00000035570	SAA4 (ENSMNEG00000043404)	SAA2 (ENSMNEG00000041389)	HPS5 (ENSMNEG00000030883)	ENSMNEG00000042089	GTF2H1 (ENSMNEG00000036878)	ENSMNEG00000042413	LDHC (ENSMNEG00000033782)	ENSMNEG00000024949	LDHAL6A (ENSMNEG00000041126)	TSG101 (ENSMNEG00000041853)
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00980000199842.D.c.b	ENSGT00960000191653	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b.w	ENSGT00390000004737.b.a.o.a.a.b.v	ENSGT00940000155818	ENSGT00390000015066.c	ENSGT00940000153201.j.k.a.a.b.a.a.a.b.b	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a
Rhesus	MODERN SPECIES	5	CALCA (ENSMMUG00000062674)	CALCB (ENSMMUG00000020245)	INSC (ENSMMUG00000020246)	SOX6 (ENSMMUG00000002753)	ENSMMUG00000055212	ENSMMUG00000064582	C14H11orf58 (ENSMMUG00000017626)	ENSMMUG00000060216	PLEKHA7 (ENSMMUG00000017628)	RPS13 (ENSMMUG00000022547)	PIK3C2A (ENSMMUG00000022548)	NUCB2 (ENSMMUG00000005895)	ABCC8 (ENSMMUG00000023581)	USH1C (ENSMMUG00000023582)	OTOG (ENSMMUG00000023586)	MYOD1 (ENSMMUG00000006400) ##22	KCNC1 (ENSMMUG00000006403)	SERGEF (ENSMMUG00000006405)	TPH1 (ENSMMUG00000006096)	SAAL1 (ENSMMUG00000014377)	MRGPRX3 (ENSMMUG00000060779)	ENSMMUG00000054997	MRGPRX4 (ENSMMUG00000055303)	SAA4 (ENSMMUG00000017960)	ENSMMUG00000011177	ENSMMUG00000060306	HPS5 (ENSMMUG00000017958)	GTF2H1 (ENSMMUG00000017959)	LDHA (ENSMMUG00000031024)	LDHC (ENSMMUG00000014615)	LDHAL6A (ENSMMUG00000014614)
Crab-eating macaque	MODERN SPECIES	5	ENSMFAG00000060735	ENSMFAG00000051873	ENSMFAG00000065082	ENSMFAG00000059859	ENSMFAG00000047457	C11orf58 (ENSMFAG00000041653)	PLEKHA7 (ENSMFAG00000000110)	ENSMFAG00000032124	PIK3C2A (ENSMFAG00000033659)	NUCB2 (ENSMFAG00000038074)	NCR3LG1 (ENSMFAG00000043862)	KCNJ11 (ENSMFAG00000010384)	ABCC8 (ENSMFAG00000035952)	USH1C (ENSMFAG00000000184)	OTOG (ENSMFAG00000001197)	MYOD1 (ENSMFAG00000039430) ##22	KCNC1 (ENSMFAG00000002367)	SERGEF (ENSMFAG00000000777)	ENSMFAG00000065213	SAAL1 (ENSMFAG00000037334)	MRGPRX3 (ENSMFAG00000052090)	MRGPRX4 (ENSMFAG00000056317)	SAA4 (ENSMFAG00000038106)	SAA2 (ENSMFAG00000044536)	ENSMFAG00000025977	HPS5 (ENSMFAG00000044104)	GTF2H1 (ENSMFAG00000032995)	ENSMFAG00000054002	ENSMFAG00000027126	LDHC (ENSMFAG00000003940)	LDHAL6A (ENSMFAG00000050157)
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.l	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084	ENSGT00940000154133.A
Tree shrew	MODERN SPECIES	1260																MYOD1 (ENSTBEG00000003438) ##22	KCNC1 (ENSTBEG00000003978)
Glires	ANCESTRAL SPECIES	1	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.l	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084	ENSGT00940000154133.A
Lagomorpha	ANCESTRAL SPECIES	4						ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.l	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084
Pika	MODERN SPECIES	975																MYOD1 (ENSOPRG00000002390) ##22	SERGEF (ENSOPRG00000002434)	TPH1 (ENSOPRG00000002467)	SAAL1 (ENSOPRG00000002493)	ENSOPRG00000002525	ENSOPRG00000002539	ENSOPRG00000002549
Rabbit	MODERN SPECIES	466					SOX6 (ENSOCUG00000012557)	C11orf58 (ENSOCUG00000036088)	PLEKHA7 (ENSOCUG00000017373)	RPS13 (ENSOCUG00000005536)	PIK3C2A (ENSOCUG00000005541)	NUCB2 (ENSOCUG00000005131)	ENSOCUG00000029474	ENSOCUG00000014161	ENSOCUG00000039600	USH1C (ENSOCUG00000002028)	OTOG (ENSOCUG00000006205)	MYOD1 (ENSOCUG00000021405) ##22	KCNC1 (ENSOCUG00000025304)	SERGEF (ENSOCUG00000002409)	SAAL1 (ENSOCUG00000002418)	ENSOCUG00000002424	SAA4 (ENSOCUG00000024412)	ENSOCUG00000017620	ENSOCUG00000021891	HPS5 (ENSOCUG00000017624)	ENSOCUG00000017633	ENSOCUG00000015939	LDHC (ENSOCUG00000027929)	TSG101 (ENSOCUG00000013940)	UEVLD (ENSOCUG00000013952)	MISFA (ENSOCUG00000038035)	SPTY2D1 (ENSOCUG00000025674)
Rodentia	ANCESTRAL SPECIES	1	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00940000170775	ENSGT00390000015066	ENSGT00940000153201.j.l.e	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00970000193605
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00940000170775	ENSGT00390000015066	ENSGT00940000153201.j.l.f.a.a.a	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00970000193605
Hystricomorpha	ANCESTRAL SPECIES	5	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687.g	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00940000155818	ENSGT00940000170775	ENSGT00390000015066	ENSGT00940000153201.j.l.f.a.a.b.b.a	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00970000193605	ENSGT00940000164956
Naked mole-rat female	MODERN SPECIES	24	INSC (ENSHGLG00000012231)	ENSHGLG00000032536	ENSHGLG00000014554	SOX6 (ENSHGLG00000013237)	ENSHGLG00000010951	PLEKHA7 (ENSHGLG00000004474)	ENSHGLG00000005727	PIK3C2A (ENSHGLG00000007454)	ENSHGLG00000037844	ENSHGLG00000004738	ENSHGLG00000036103	KCNJ11 (ENSHGLG00000037268)	ABCC8 (ENSHGLG00000008993)	USH1C (ENSHGLG00000010904)	ENSHGLG00000006891	MYOD1 (ENSHGLG00000004984) ##22	KCNC1 (ENSHGLG00000005420)	SERGEF (ENSHGLG00000005775)	TPH1 (ENSHGLG00000033079)	SAAL1 (ENSHGLG00000007181)	ENSHGLG00000039519	SAA4 (ENSHGLG00000042878)	HPS5 (ENSHGLG00000010391)	ENSHGLG00000015129	ENSHGLG00000015168	LDHC (ENSHGLG00000015435)	TSG101 (ENSHGLG00000013227)	UEVLD (ENSHGLG00000008452)	ENSHGLG00000046195	ENSHGLG00000048762	ENSHGLG00000035318
Hystricomorpha_a	ANCESTRAL SPECIES	47	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267.p	ENSGT00940000156267.o	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687.g	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00940000155818	ENSGT00940000170775	ENSGT00390000015066	ENSGT00940000153201.j.l.f.a.a.b.b.a.a	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00970000193605	ENSGT01050000248165
Guinea pig	MODERN SPECIES	67	PDE3B (ENSCPOG00000014511)	CYP2R1 (ENSCPOG00000015305)	ENSCPOG00000009939	ENSCPOG00000034508	INSC (ENSCPOG00000009748)	SOX6 (ENSCPOG00000012090)	C11orf58 (ENSCPOG00000038571)	PLEKHA7 (ENSCPOG00000006974)	RPS13 (ENSCPOG00000000023)	PIK3C2A (ENSCPOG00000000024)	NUCB2 (ENSCPOG00000023342)	KCNJ11 (ENSCPOG00000004142)	ABCC8 (ENSCPOG00000001255)	USH1C (ENSCPOG00000001261)	OTOG (ENSCPOG00000002809)	MYOD1 (ENSCPOG00000021351) ##22	KCNC1 (ENSCPOG00000011387)	SERGEF (ENSCPOG00000000907)	TPH1 (ENSCPOG00000000911)	SAAL1 (ENSCPOG00000006107)	ENSCPOG00000037249	PLEKHM1 (ENSCPOG00000011348)	ARHGAP27 (ENSCPOG00000033813)	MAP3K14 (ENSCPOG00000004839)	FMNL1 (ENSCPOG00000024625)	HEXIM1 (ENSCPOG00000007132)	ACBD4 (ENSCPOG00000034610)	PLCD3 (ENSCPOG00000007126)	NMT1 (ENSCPOG00000000854)	DCAKD (ENSCPOG00000040615)	C1QL1 (ENSCPOG00000023818)
Hystricomorpha_b	ANCESTRAL SPECIES	5	ENSGT00940000158305	ENSGT00940000156267.p	ENSGT00940000156267.o	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000171813	ENSGT00390000000687.g	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00940000155818	ENSGT00940000170775	ENSGT00390000015066	ENSGT00940000153201.j.l.e	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00970000193605	ENSGT01090000262692
Long-tailed chinchilla	MODERN SPECIES	121	CYP2R1 (ENSCLAG00000016825)	ENSCLAG00000016987	ENSCLAG00000017178	INSC (ENSCLAG00000017184)	SOX6 (ENSCLAG00000016824)	ENSCLAG00000016704	C11orf58 (ENSCLAG00000016801)	PLEKHA7 (ENSCLAG00000017010)	ENSCLAG00000017194	PIK3C2A (ENSCLAG00000016983)	NUCB2 (ENSCLAG00000015316)	KCNJ11 (ENSCLAG00000018089)	ABCC8 (ENSCLAG00000017273)	USH1C (ENSCLAG00000017070)	OTOG (ENSCLAG00000017199)	MYOD1 (ENSCLAG00000016988) ##22	KCNC1 (ENSCLAG00000017208)	SERGEF (ENSCLAG00000016819)	TPH1 (ENSCLAG00000017233)	SAAL1 (ENSCLAG00000017121)	ENSCLAG00000016741	SAA4 (ENSCLAG00000016977)	HPS5 (ENSCLAG00000017249)	GTF2H1 (ENSCLAG00000016966)	ENSCLAG00000017061	LDHC (ENSCLAG00000017086)	TSG101 (ENSCLAG00000017169)	UEVLD (ENSCLAG00000017090)	ENSCLAG00000017270	ENSCLAG00000017004	SPTY2D1 (ENSCLAG00000017224)
Degu	MODERN SPECIES	108	ENSODEG00000019671	ENSODEG00000009712	INSC (ENSODEG00000008548)	SOX6 (ENSODEG00000008432)	ENSODEG00000009867	PLEKHA7 (ENSODEG00000010004)	ENSODEG00000009296	PIK3C2A (ENSODEG00000009662)	NUCB2 (ENSODEG00000009138)	ENSODEG00000008817	ENSODEG00000009435	KCNJ11 (ENSODEG00000019745)	ABCC8 (ENSODEG00000009121)	USH1C (ENSODEG00000009175)	OTOG (ENSODEG00000012735)	MYOD1 (ENSODEG00000009827) ##22	KCNC1 (ENSODEG00000009078)	TPH1 (ENSODEG00000009357)	SAAL1 (ENSODEG00000013515)	ENSODEG00000009128	ENSODEG00000009541	ENSODEG00000009628	ENSODEG00000009884	ENSODEG00000010218	ENSODEG00000019665	ENSODEG00000009666	ENSODEG00000010324	ENSODEG00000010760	TSG101 (ENSODEG00000011046)	ENSODEG00000009385	ENSODEG00000010073
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.l.f.a.a.a.a	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00970000193605	ENSGT00940000154133.A
Marmotini	ANCESTRAL SPECIES	22	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.l.f.a.a.a.a	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00970000193605	ENSGT01040000242859	ENSGT00940000154133.A
Marmotini_b	ANCESTRAL SPECIES	61	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT01090000260040.a.a.a.r	ENSGT00900000143156.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.l.f.a.a.a.a	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00970000193605
Arctic ground squirrel	MODERN SPECIES	206	CYP2R1 (ENSUPAG00010005791)	CALCA (ENSUPAG00010005812)	CALCB (ENSUPAG00010005825)	INSC (ENSUPAG00010005831)	SOX6 (ENSUPAG00010005850)	C11orf58 (ENSUPAG00010006090)	PLEKHA7 (ENSUPAG00010006111)	RPS13 (ENSUPAG00010006654)	PIK3C2A (ENSUPAG00010006674)	ENSUPAG00010006717	NUCB2 (ENSUPAG00010006739)	KCNJ11 (ENSUPAG00010006778)	ABCC8 (ENSUPAG00010006784)	USH1C (ENSUPAG00010006868)	OTOG (ENSUPAG00010007511)	MYOD1 (ENSUPAG00010007585) ##22	KCNC1 (ENSUPAG00010007591)	SERGEF (ENSUPAG00010007606)	TPH1 (ENSUPAG00010007637)	ENSUPAG00010007658	SAAL1 (ENSUPAG00010007663)	ENSUPAG00010007687	SAA4 (ENSUPAG00010007690)
Squirrel	MODERN SPECIES	128	CALCA (ENSSTOG00000003844)	CALCB (ENSSTOG00000012372)	INSC (ENSSTOG00000012376)	SOX6 (ENSSTOG00000013609)	C11orf58 (ENSSTOG00000001419)	PLEKHA7 (ENSSTOG00000001423)	ENSSTOG00000008996	ENSSTOG00000031973	PIK3C2A (ENSSTOG00000009188)	ENSSTOG00000031872	NUCB2 (ENSSTOG00000001896)	KCNJ11 (ENSSTOG00000025616)	ABCC8 (ENSSTOG00000001904)	USH1C (ENSSTOG00000001933)	OTOG (ENSSTOG00000025595)	MYOD1 (ENSSTOG00000011556) ##22	KCNC1 (ENSSTOG00000019519)	SERGEF (ENSSTOG00000003395)	TPH1 (ENSSTOG00000003404)	ENSSTOG00000031021	SAAL1 (ENSSTOG00000003419)	ENSSTOG00000022064	ENSSTOG00000000012	HPS5 (ENSSTOG00000000011)	GTF2H1 (ENSSTOG00000000013)	ENSSTOG00000033703	ENSSTOG00000000014	LDHC (ENSSTOG00000032003)	TSG101 (ENSSTOG00000024403)	UEVLD (ENSSTOG00000009271)	ENSSTOG00000032227
Alpin marmot	MODERN SPECIES	3	CALCA (ENSMMMG00000003285)	CALCB (ENSMMMG00000003306)	INSC (ENSMMMG00000003331)	SOX6 (ENSMMMG00000003398)	C11orf58 (ENSMMMG00000003760)	PLEKHA7 (ENSMMMG00000003770)	ENSMMMG00000003997	PIK3C2A (ENSMMMG00000004019)	ENSMMMG00000004134	ENSMMMG00000004174	NUCB2 (ENSMMMG00000004191)	KCNJ11 (ENSMMMG00000004222)	ABCC8 (ENSMMMG00000004227)	USH1C (ENSMMMG00000004314)	ENSMMMG00000004715	MYOD1 (ENSMMMG00000004739) ##22	KCNC1 (ENSMMMG00000004744)	ENSMMMG00000004750	SERGEF (ENSMMMG00000004759)	TPH1 (ENSMMMG00000004814)	ENSMMMG00000004842	SAAL1 (ENSMMMG00000004860)	ENSMMMG00000004876	SAA4 (ENSMMMG00000004885)	HPS5 (ENSMMMG00000004900)	GTF2H1 (ENSMMMG00000005016)	ENSMMMG00000005208	ENSMMMG00000005255	TSG101 (ENSMMMG00000005296)	UEVLD (ENSMMMG00000005312)	ENSMMMG00000005344
Eurasian red squirrel	MODERN SPECIES	2	CYP2R1 (ENSSVLG00005009273)	CALCA (ENSSVLG00005009221)	CALCB (ENSSVLG00005009182)	INSC (ENSSVLG00005008947)	SOX6 (ENSSVLG00005008583)	ENSSVLG00005008507	PLEKHA7 (ENSSVLG00005008253)	ENSSVLG00005008146	PIK3C2A (ENSSVLG00005007973)	ENSSVLG00005007915	NUCB2 (ENSSVLG00005007770)	KCNJ11 (ENSSVLG00005007700)	ABCC8 (ENSSVLG00005006593)	USH1C (ENSSVLG00005005925)	OTOG (ENSSVLG00005005330)	MYOD1 (ENSSVLG00005005222) ##22	KCNC1 (ENSSVLG00005005188)	SERGEF (ENSSVLG00005005160)	TPH1 (ENSSVLG00005005094)	SAAL1 (ENSSVLG00005004983)	ENSSVLG00005004937	SAA4 (ENSSVLG00005004914)	ENSSVLG00005004896	ENSSVLG00005004866	ENSSVLG00005004846	HPS5 (ENSSVLG00005004813)	GTF2H1 (ENSSVLG00005016086)	ENSSVLG00005015754	LDHC (ENSSVLG00005015342)	TSG101 (ENSSVLG00005015216)	UEVLD (ENSSVLG00005015052)
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.a	ENSGT00390000004737.b.a.p	ENSGT00940000155818	ENSGT00940000170775	ENSGT00390000015066	ENSGT00940000153201.j.l.e	ENSGT00940000161479	ENSGT00940000153903.a.a
Kangaroo rat	MODERN SPECIES	501	Psma1 (ENSDORG00000009494)	Pde3b (ENSDORG00000016029)	Cyp2r1 (ENSDORG00000001470)	ENSDORG00000007871	Calcb (ENSDORG00000015509)	Insc (ENSDORG00000015511)	Sox6 (ENSDORG00000013073)	1110004F10Rik (ENSDORG00000029283)	Plekha7 (ENSDORG00000013868)	Rps13 (ENSDORG00000002507)	Pik3c2a (ENSDORG00000002510)	Nucb2 (ENSDORG00000009599)	Abcc8 (ENSDORG00000009602)	Ush1c (ENSDORG00000009605)	Otog (ENSDORG00000009610)	Myod1 (ENSDORG00000027063) ##22	Kcnc1 (ENSDORG00000013230)	Sergef (ENSDORG00000013234)	ENSDORG00000013235	Saal1 (ENSDORG00000013616)	ENSDORG00000012937	Hps5 (ENSDORG00000004137)
Myomorpha	ANCESTRAL SPECIES	13	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.a	ENSGT00390000004737.b.a.p	ENSGT00940000155818	ENSGT00940000170775	ENSGT00390000015066	ENSGT00940000153201.j.l.e	ENSGT00940000161479	ENSGT00940000153903.a.a
Muroidea	ANCESTRAL SPECIES	65											ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00940000170775	ENSGT00390000015066	ENSGT00940000153201.j.l.e	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00970000193605
Muroidea_A	ANCESTRAL SPECIES		ENSGT01030000234586.B.a.b	ENSGT00550000075124	ENSGT00940000159109	ENSGT00390000004010.a.a	ENSGT00950000182935.A	ENSGT00940000154315.a	ENSGT00950000182696.B.b	ENSGT00940000153116.A	ENSGT00940000157145	ENSGT00390000000089	ENSGT00940000163348.e.c	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.a	ENSGT00940000155818	ENSGT00940000170775	ENSGT00390000015066	ENSGT00940000153201.j.l.e	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00970000193605
Cricetidae	ANCESTRAL SPECIES	28	ENSGT01030000234586.B.a.b	ENSGT00550000075124	ENSGT00940000159109	ENSGT00390000004010.a.a	ENSGT00950000182935.A	ENSGT00940000154315.a	ENSGT00950000182696.B.b	ENSGT00940000153116.A	ENSGT00940000157145	ENSGT00390000000089	ENSGT00940000163348.e.c	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.a
Cricetidae_B	ANCESTRAL SPECIES	31	ENSGT01030000234586.B.a.b	ENSGT00550000075124	ENSGT00940000159109	ENSGT00390000004010.a.a	ENSGT00950000182935.A	ENSGT00940000154315.a	ENSGT00950000182696.B.b	ENSGT00940000153116.A	ENSGT00940000157145	ENSGT00390000000089	ENSGT00940000163348.e.c	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.a
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	97	4931406B18Rik (ENSMOCG00000013427)	Iglon5 (ENSMOCG00000014619)	Vsig10l (ENSMOCG00000017203)	Etfb (ENSMOCG00000021177)	Cldnd2 (ENSMOCG00000022596)	Nkg7 (ENSMOCG00000007727)	Lim2 (ENSMOCG00000013148)	Gm38999 (ENSMOCG00000011273)	Siglecg (ENSMOCG00000008279)	Siglecf (ENSMOCG00000016848)	ENSMOCG00000003394	ENSMOCG00000001795	ENSMOCG00000006148	ENSMOCG00000014546	ENSMOCG00000016813	ENSMOCG00000021232 ##22	Luzp2 (ENSMOCG00000008924)	Siglech (ENSMOCG00000000862)	Tubgcp5 (ENSMOCG00000013811)
Prairie vole	MODERN SPECIES	97												Kcnj11 (ENSMOCG00000007862)	Abcc8 (ENSMOCG00000013816)	Ush1c (ENSMOCG00000015362)	Otog (ENSMOCG00000020280)	ENSMOCG00000002983 ##22	Kcnc1 (ENSMOCG00000020898)	Tph1 (ENSMOCG00000022944)	Saal1 (ENSMOCG00000019240)	ENSMOCG00000012708	Saa3 (ENSMOCG00000022825)	Saa4 (ENSMOCG00000003806)	ENSMOCG00000021805	ENSMOCG00000012779	Abcc6 (ENSMOCG00000016244)	ENSMOCG00000010788	Emp3 (ENSMOCG00000006718)	Tmem143 (ENSMOCG00000012780)	Syngr4 (ENSMOCG00000020597)	Kdelr1 (ENSMOCG00000000652)	Grin2d (ENSMOCG00000019653)
Northern American deer mouse	MODERN SPECIES		Syngr4 (ENSPEMG00000011020)	Tmem143 (ENSPEMG00000015974)	Emp3 (ENSPEMG00000027338)	ENSPEMG00000014876	ENSPEMG00000024292	ENSPEMG00000030125	ENSPEMG00000031055	ENSPEMG00000031392	Abcc6 (ENSPEMG00000016077)	Nomo1 (ENSPEMG00000016802)	ENSPEMG00000028367	Kcnj11 (ENSPEMG00000006566)	Abcc8 (ENSPEMG00000003061)	Ush1c (ENSPEMG00000016758)	Otog (ENSPEMG00000011623)	Myod1 (ENSPEMG00000017570) ##22	Kcnc1 (ENSPEMG00000014098)	Sergef (ENSPEMG00000008220)	Tph1 (ENSPEMG00000011560)	Saal1 (ENSPEMG00000003170)	ENSPEMG00000026619	ENSPEMG00000019341	ENSPEMG00000028115	ENSPEMG00000012474	Svip (ENSPEMG00000017315)	Gas2 (ENSPEMG00000006543)	Fancf (ENSPEMG00000026089)	Slc17a6 (ENSPEMG00000012568)	Ano5 (ENSPEMG00000011022)	Nell1 (ENSPEMG00000009575)	Slc6a5 (ENSPEMG00000020942)
Cricetinae	ANCESTRAL SPECIES	33	ENSGT01030000234586.B.a.b	ENSGT00550000075124	ENSGT00940000159109	ENSGT00390000004010.a.a	ENSGT00950000182935.A	ENSGT00940000154315.a	ENSGT00950000182696.B.b	ENSGT00940000153116.A	ENSGT00940000157145	ENSGT00390000000089	ENSGT00940000163348.e.c	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b
Chinese hamster chok1gshd	MODERN SPECIES	271	Grwd1 (ENSCGRG00001010417)	Grin2d (ENSCGRG00001004821)	ENSCGRG00001020346	Syngr4 (ENSCGRG00001019310)	ENSCGRG00001016333	Tmem143 (ENSCGRG00001004118)	Emp3 (ENSCGRG00001019827)	ENSCGRG00001015977	Abcc6 (ENSCGRG00001019363)	Nomo1 (ENSCGRG00001022926)	ENSCGRG00001007718	Kcnj11 (ENSCGRG00001016383)	Abcc8 (ENSCGRG00001019046)	Ush1c (ENSCGRG00001019889)	Otog (ENSCGRG00001017020)	Myod1 (ENSCGRG00001012742) ##22	Kcnc1 (ENSCGRG00001000468)	ENSCGRG00001023881	Tph1 (ENSCGRG00001020143)	ENSCGRG00001013232	Saa3 (ENSCGRG00001011262)
Golden Hamster	MODERN SPECIES	792	Kcnj14 (ENSMAUG00000013149)	Grwd1 (ENSMAUG00000008728)	Grin2d (ENSMAUG00000015271)	Kdelr1 (ENSMAUG00000017897)	Syngr4 (ENSMAUG00000019444)	Tmem143 (ENSMAUG00000021611)	Emp3 (ENSMAUG00000011967)	ENSMAUG00000017711	ENSMAUG00000019813	Abcc6 (ENSMAUG00000011133)	Nomo1 (ENSMAUG00000014334)	Kcnj11 (ENSMAUG00000006751)	Abcc8 (ENSMAUG00000007029)	Ush1c (ENSMAUG00000000973)	ENSMAUG00000018031	Myod1 (ENSMAUG00000013881) ##22	Kcnc1 (ENSMAUG00000020682)	Sergef (ENSMAUG00000010081)	Tph1 (ENSMAUG00000002337)	Saal1 (ENSMAUG00000003480)	Saa3 (ENSMAUG00000001692)
Murinae	ANCESTRAL SPECIES		ENSGT01030000234586.B.a.b	ENSGT00550000075124	ENSGT00940000159109	ENSGT00390000004010.a.a	ENSGT00950000182935.A	ENSGT00940000154315.a	ENSGT00950000182696.B.b	ENSGT00940000153116.A	ENSGT00940000157145	ENSGT00390000000089	ENSGT00940000163348.e.c	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.l.e	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00970000193605	ENSGT00940000154133.A	ENSGT00390000007101.d.b
Mus	ANCESTRAL SPECIES		ENSGT00940000160074	ENSGT01030000234586.B.a.b	ENSGT00550000075124	ENSGT00940000159109	ENSGT00390000004010.a.a	ENSGT00950000182935.A	ENSGT00940000154315.a	ENSGT00950000182696.B.b	ENSGT00940000153116.A	ENSGT00940000157145	ENSGT00390000000089	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.p	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.l.e	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00970000193605	ENSGT00940000154133.A
Mus_A	ANCESTRAL SPECIES	1	ENSGT00940000160074	ENSGT01030000234586.B.a.b	ENSGT00550000075124	ENSGT00940000159109	ENSGT00390000004010.a.a	ENSGT00950000182935.A	ENSGT00940000154315.a	ENSGT00950000182696.B.b	ENSGT00940000153116.A	ENSGT00940000157145	ENSGT00390000000089	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.p.c	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.l.e.f.b	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00970000193605	ENSGT00940000154133.A
Ryukyu mouse	MODERN SPECIES	16	Cyth2 (MGP_CAROLIEiJ_G0029745)	Kcnj14 (MGP_CAROLIEiJ_G0029746)	Grwd1 (MGP_CAROLIEiJ_G0029747)	Grin2d (MGP_CAROLIEiJ_G0029748)	Kdelr1 (MGP_CAROLIEiJ_G0029749)	Syngr4 (MGP_CAROLIEiJ_G0029750)	Tmem143 (MGP_CAROLIEiJ_G0029751)	Emp3 (MGP_CAROLIEiJ_G0029752)	MGP_CAROLIEiJ_G0029753	Abcc6 (MGP_CAROLIEiJ_G0029754)	Nomo1 (MGP_CAROLIEiJ_G0029755)	Kcnj11 (MGP_CAROLIEiJ_G0029756)	Abcc8 (MGP_CAROLIEiJ_G0029757)	Ush1c (MGP_CAROLIEiJ_G0029758)	Otog (MGP_CAROLIEiJ_G0029759)	Myod1 (MGP_CAROLIEiJ_G0029760) ##22	Kcnc1 (MGP_CAROLIEiJ_G0029761)	Sergef (MGP_CAROLIEiJ_G0029762)	Tph1 (MGP_CAROLIEiJ_G0029763)	Saal1 (MGP_CAROLIEiJ_G0029764)	Saa3 (MGP_CAROLIEiJ_G0029765)	Saa4 (MGP_CAROLIEiJ_G0029766)	MGP_CAROLIEiJ_G0029767	MGP_CAROLIEiJ_G0029768	Hps5 (MGP_CAROLIEiJ_G0029769)	Gtf2h1 (MGP_CAROLIEiJ_G0029770)	Ldha (MGP_CAROLIEiJ_G0029771)	MGP_CAROLIEiJ_G0029772	Tsg101 (MGP_CAROLIEiJ_G0029773)	Uevld (MGP_CAROLIEiJ_G0029774)	MGP_CAROLIEiJ_G0029775
Mus_B	ANCESTRAL SPECIES		ENSGT01030000234586.B.a.b	ENSGT00550000075124	ENSGT00940000159109	ENSGT00390000004010.a.a	ENSGT00950000182935.A	ENSGT00940000154315.a	ENSGT00950000182696.B.b	ENSGT00950000183364	ENSGT00940000153116.A	ENSGT00940000157145	ENSGT00390000000089	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.p.c	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.l.e.f.b	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00970000193605	ENSGT00940000154133.A
Mouse	MODERN SPECIES	16	Cyth2 (ENSMUSG00000003269)	Kcnj14 (ENSMUSG00000058743)	Grwd1 (ENSMUSG00000053801)	Grin2d (ENSMUSG00000002771)	Kdelr1 (ENSMUSG00000002778)	Syngr4 (ENSMUSG00000040231)	Tmem143 (ENSMUSG00000002781)	Emp3 (ENSMUSG00000040212)	Odad1 (ENSMUSG00000040189)	Abcc6 (ENSMUSG00000030834)	Nomo1 (ENSMUSG00000030835)	Kcnj11 (ENSMUSG00000096146)	Abcc8 (ENSMUSG00000040136)	Ush1c (ENSMUSG00000030838)	Otog (ENSMUSG00000009487)	Myod1 (ENSMUSG00000009471) ##22	Kcnc1 (ENSMUSG00000058975)	Sergef (ENSMUSG00000030839)	Tph1 (ENSMUSG00000040046)	Saal1 (ENSMUSG00000006763)	Saa3 (ENSMUSG00000040026)	Saa4 (ENSMUSG00000040017)	Saa1 (ENSMUSG00000074115)	Saa2 (ENSMUSG00000057465)	Hps5 (ENSMUSG00000014418)	Gtf2h1 (ENSMUSG00000006599)	Ldha (ENSMUSG00000063229)	Ldhc (ENSMUSG00000030851)	Tsg101 (ENSMUSG00000014402)	Uevld (ENSMUSG00000043262)	Misfa (ENSMUSG00000056509)
Mus_C	ANCESTRAL SPECIES	13	ENSGT00940000160074	ENSGT01030000234586.B.a.b	ENSGT00550000075124	ENSGT00940000159109	ENSGT00390000004010.a.a	ENSGT00950000182935.A	ENSGT00940000154315.a	ENSGT00950000182696.B.b	ENSGT00940000153116.A	ENSGT00940000157145	ENSGT00390000000089	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.p.c	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.l.e.f.a.a.b	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00970000193605	ENSGT01050000246954
spretus	MODERN SPECIES	16	Cyth2 (MGP_SPRETEiJ_G0030843)	Kcnj14 (MGP_SPRETEiJ_G0030844)	Grwd1 (MGP_SPRETEiJ_G0030845)	Grin2d (MGP_SPRETEiJ_G0030846)	Kdelr1 (MGP_SPRETEiJ_G0030847)	Syngr4 (MGP_SPRETEiJ_G0030848)	Tmem143 (MGP_SPRETEiJ_G0030849)	Emp3 (MGP_SPRETEiJ_G0030850)	MGP_SPRETEiJ_G0030851	Abcc6 (MGP_SPRETEiJ_G0030852)	Nomo1 (MGP_SPRETEiJ_G0030853)	Kcnj11 (MGP_SPRETEiJ_G0030854)	Abcc8 (MGP_SPRETEiJ_G0030855)	Ush1c (MGP_SPRETEiJ_G0030856)	Otog (MGP_SPRETEiJ_G0030857)	Myod1 (MGP_SPRETEiJ_G0030858) ##22	Kcnc1 (MGP_SPRETEiJ_G0030859)	Sergef (MGP_SPRETEiJ_G0030860)	Tph1 (MGP_SPRETEiJ_G0030861)	Saal1 (MGP_SPRETEiJ_G0030862)	Saa3 (MGP_SPRETEiJ_G0030863)	Saa4 (MGP_SPRETEiJ_G0030864)	MGP_SPRETEiJ_G0030865	MGP_SPRETEiJ_G0030866	Hps5 (MGP_SPRETEiJ_G0030867)	Gtf2h1 (MGP_SPRETEiJ_G0030868)	Ldha (MGP_SPRETEiJ_G0030869)	Ldhc (MGP_SPRETEiJ_G0030870)	MGP_SPRETEiJ_G0030871	Uevld (MGP_SPRETEiJ_G0030872)	MGP_SPRETEiJ_G0030873
Steppe mouse	MODERN SPECIES	3390					ENSMSIG00000026284	Syngr4 (ENSMSIG00000026311)	Tmem143 (ENSMSIG00000026331)	Emp3 (ENSMSIG00000026370)	Odad1 (ENSMSIG00000026391)	Abcc6 (ENSMSIG00000026407)	Nomo1 (ENSMSIG00000026440)	Kcnj11 (ENSMSIG00000026521)	Abcc8 (ENSMSIG00000026529)	Ush1c (ENSMSIG00000026733)	Otog (ENSMSIG00000027559)	Myod1 (ENSMSIG00000027645) ##22	Kcnc1 (ENSMSIG00000027653)	Sergef (ENSMSIG00000027666)	Tph1 (ENSMSIG00000027705)	Saal1 (ENSMSIG00000027716)	Saa3 (ENSMSIG00000027731)	Saa4 (ENSMSIG00000027736)
Shrew mouse	MODERN SPECIES		Cyth2 (MGP_PahariEiJ_G0012970)	Kcnj14 (MGP_PahariEiJ_G0012971)	Grwd1 (MGP_PahariEiJ_G0012972)	Grin2d (MGP_PahariEiJ_G0012973)	Kdelr1 (MGP_PahariEiJ_G0012974)	Syngr4 (MGP_PahariEiJ_G0012975)	Tmem143 (MGP_PahariEiJ_G0012976)	Emp3 (MGP_PahariEiJ_G0012977)	MGP_PahariEiJ_G0012978	Abcc6 (MGP_PahariEiJ_G0012979)	Nomo1 (MGP_PahariEiJ_G0012980)	Kcnj11 (MGP_PahariEiJ_G0012981)	Abcc8 (MGP_PahariEiJ_G0012982)	Ush1c (MGP_PahariEiJ_G0012983)	Otog (MGP_PahariEiJ_G0012984)	Myod1 (MGP_PahariEiJ_G0012985) ##22	Kcnc1 (MGP_PahariEiJ_G0012986)	MGP_PahariEiJ_G0012987	Tph1 (MGP_PahariEiJ_G0012988)	Saal1 (MGP_PahariEiJ_G0012989)	Saa3 (MGP_PahariEiJ_G0012990)	Saa4 (MGP_PahariEiJ_G0012991)	MGP_PahariEiJ_G0012992	MGP_PahariEiJ_G0012993	Hps5 (MGP_PahariEiJ_G0012994)	Gtf2h1 (MGP_PahariEiJ_G0012995)	MGP_PahariEiJ_G0012996	Ldhc (MGP_PahariEiJ_G0012997)	Tsg101 (MGP_PahariEiJ_G0012998)	Uevld (MGP_PahariEiJ_G0012999)	MGP_PahariEiJ_G0013000
Rat	MODERN SPECIES		Kcnj14 (ENSRNOG00000021056)	Grwd1 (ENSRNOG00000021058)	Grin2d (ENSRNOG00000021063)	Kdelr1 (ENSRNOG00000021082)	Syngr4 (ENSRNOG00000021093)	Tmem143 (ENSRNOG00000021096)	Emp3 (ENSRNOG00000021104)	Odad1 (ENSRNOG00000021109)	Abcc6 (ENSRNOG00000028781)	Nomo1 (ENSRNOG00000021118)	Ncr3lg1 (ENSRNOG00000070704)	Kcnj11 (ENSRNOG00000021128)	Abcc8 (ENSRNOG00000021130)	Ush1c (ENSRNOG00000021149)	Otog (ENSRNOG00000010983)	Myod1 (ENSRNOG00000011306) ##22	Kcnc1 (ENSRNOG00000055401)	Sergef (ENSRNOG00000011488)	Tph1 (ENSRNOG00000011672)	Saal1 (ENSRNOG00000011895)	Saa4 (ENSRNOG00000055531)	Gtf2h1 (ENSRNOG00000012360)	Ldha (ENSRNOG00000013009)	Ldhc (ENSRNOG00000013103)	Tsg101 (ENSRNOG00000013381)	Uevld (ENSRNOG00000013624)	LOC100911574 (ENSRNOG00000066101)	Spty2d1 (ENSRNOG00000070392)	AABR07003273.1 (ENSRNOG00000050257)	Tmem86a (ENSRNOG00000013663)	Ptpn5 (ENSRNOG00000013981)
Upper Galilee mountains blind mole rat	MODERN SPECIES	847												Kcnj11 (ENSNGAG00000006021)	Abcc8 (ENSNGAG00000014435)	Ush1c (ENSNGAG00000011687)	Otog (ENSNGAG00000018230)	Myod1 (ENSNGAG00000018134) ##22	Kcnc1 (ENSNGAG00000010985)	Sergef (ENSNGAG00000011505)	Tph1 (ENSNGAG00000013495)	Saal1 (ENSNGAG00000014266)
Lesser Egyptian jerboa	MODERN SPECIES	43	Calca (ENSJJAG00000007984)	Calcb (ENSJJAG00000009837)	Insc (ENSJJAG00000008221)	Sox6 (ENSJJAG00000019247)	ENSJJAG00000018380	ENSJJAG00000007100	Plekha7 (ENSJJAG00000015908)	Rps13 (ENSJJAG00000014986)	ENSJJAG00000001032	Pik3c2a (ENSJJAG00000022972)	Nucb2 (ENSJJAG00000016858)	Kcnj11 (ENSJJAG00000011720)	Abcc8 (ENSJJAG00000019120)	Ush1c (ENSJJAG00000023737)	ENSJJAG00000020712	Myod1 (ENSJJAG00000022220) ##22	Kcnc1 (ENSJJAG00000020413)	Sergef (ENSJJAG00000006549)	Tph1 (ENSJJAG00000023739)	Saal1 (ENSJJAG00000019205)	Luzp2 (ENSJJAG00000012698)	ENSJJAG00000018291	Svip (ENSJJAG00000021446)	Gas2 (ENSJJAG00000015866)	Slc17a6 (ENSJJAG00000020770)	Ano5 (ENSJJAG00000015882)	Nell1 (ENSJJAG00000011975)	Slc6a5 (ENSJJAG00000015806)	Prmt3 (ENSJJAG00000012757)	Htatip2 (ENSJJAG00000010030)	ENSJJAG00000020128
Marsupialia	ANCESTRAL SPECIES	7	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155818	ENSGT00390000015066.a	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000163242	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123
Opossum	MODERN SPECIES	4	PDE3B (ENSMODG00000007280)	CYP2R1 (ENSMODG00000007273)	INSC (ENSMODG00000007236)	ENSMODG00000024593	ENSMODG00000029280	SOX6 (ENSMODG00000007224)	C11orf58 (ENSMODG00000043387)	PLEKHA7 (ENSMODG00000007138)	RPS13 (ENSMODG00000007078)	ENSMODG00000007062	NUCB2 (ENSMODG00000007015)	KCNJ11 (ENSMODG00000007004)	ABCC8 (ENSMODG00000006995)	USH1C (ENSMODG00000006841)	OTOG (ENSMODG00000006791)	MYOD1 (ENSMODG00000006749) ##22	KCNC1 (ENSMODG00000006734)	ENSMODG00000006721	TPH1 (ENSMODG00000006704)	SAAL1 (ENSMODG00000006679)	ENSMODG00000024617	HPS5 (ENSMODG00000006574)	ENSMODG00000006540	LDHA (ENSMODG00000006522)	ENSMODG00000006509	ENSMODG00000040672	ENSMODG00000006410	ENSMODG00000006389	ENSMODG00000049605	ENSMODG00000037593	ENSMODG00000006373
Marsupialia_b	ANCESTRAL SPECIES	8	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687.b	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155818	ENSGT00390000015066.a	ENSGT00940000153201.i.a	ENSGT01030000235549	ENSGT00940000161479	ENSGT00940000163242	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084	ENSGT00940000164956	ENSGT00940000164122
Diprotodontia	ANCESTRAL SPECIES	10	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687.b	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155818	ENSGT00390000015066.a	ENSGT00940000153201.i.a	ENSGT01030000235549	ENSGT00940000161479	ENSGT00940000163242	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084	ENSGT00940000164956	ENSGT00940000154133.A
Diprotodontia_a	ANCESTRAL SPECIES	12	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687.b	ENSGT00940000155817.a.a	ENSGT00390000017491.t.w	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e.e	ENSGT00940000163348.e.f	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155818	ENSGT00390000015066.a	ENSGT00940000153201.i.a.b	ENSGT01030000235549.a.b	ENSGT00940000161479	ENSGT01030000235549.a.a	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084	ENSGT00940000164956	ENSGT00940000154133.A
koala	MODERN SPECIES	108	PSMA1 (ENSPCIG00000010513)	PDE3B (ENSPCIG00000034172)	CYP2R1 (ENSPCIG00000010518)	ENSPCIG00000010519	INSC (ENSPCIG00000010520)	SOX6 (ENSPCIG00000021385)	C11orf58 (ENSPCIG00000021388)	PLEKHA7 (ENSPCIG00000021403)	ENSPCIG00000013612	PIK3C2A (ENSPCIG00000013619)	NUCB2 (ENSPCIG00000013631)	ENSPCIG00000035386	ENSPCIG00000013127	ABCC8 (ENSPCIG00000013643)	USH1C (ENSPCIG00000013650)	MYOD1 (ENSPCIG00000018402) ##22	KCNC1 (ENSPCIG00000013732)	ENSPCIG00000013737	TPH1 (ENSPCIG00000013741)	SAAL1 (ENSPCIG00000013745)	ENSPCIG00000033997	HPS5 (ENSPCIG00000013753)	GTF2H1 (ENSPCIG00000013760)	ENSPCIG00000013770	LDHC (ENSPCIG00000013990)	ENSPCIG00000013992	TSG101 (ENSPCIG00000013997)	UEVLD (ENSPCIG00000014004)	MISFA (ENSPCIG00000014006)	ENSPCIG00000037419	SPTY2D1 (ENSPCIG00000014008)
Common wonbat	MODERN SPECIES	608	ENSVURG00010005754	ENSVURG00010005761	INSC (ENSVURG00010005781)	SOX6 (ENSVURG00010005847)	C11orf58 (ENSVURG00010005869)	PLEKHA7 (ENSVURG00010005891)	RPS13 (ENSVURG00010005940)	PIK3C2A (ENSVURG00010005972)	NUCB2 (ENSVURG00010006037)	ENSVURG00010006183	ENSVURG00010006198	KCNJ11 (ENSVURG00010006207)	ABCC8 (ENSVURG00010006223)	USH1C (ENSVURG00010006258)	OTOG (ENSVURG00010006327)	MYOD1 (ENSVURG00010006453) ##22	KCNC1 (ENSVURG00010006461)	SERGEF (ENSVURG00010006477)	TPH1 (ENSVURG00010006498)	SAAL1 (ENSVURG00010006512)
Wallaby	MODERN SPECIES	12482																MYOD1 (ENSMEUG00000014270) ##22
Tasmanian devil	MODERN SPECIES	5	PDE3B (ENSSHAG00000014935)	CYP2R1 (ENSSHAG00000014886)	ENSSHAG00000025195	INSC (ENSSHAG00000014350)	ENSSHAG00000028264	SOX6 (ENSSHAG00000006502)	ENSSHAG00000008106	PLEKHA7 (ENSSHAG00000007139)	RPS13 (ENSSHAG00000004052)	PIK3C2A (ENSSHAG00000001008)	ENSSHAG00000028371	KCNJ11 (ENSSHAG00000022074)	ABCC8 (ENSSHAG00000017597)	USH1C (ENSSHAG00000017497)	OTOG (ENSSHAG00000017355)	MYOD1 (ENSSHAG00000017220) ##22	KCNC1 (ENSSHAG00000022035)	ENSSHAG00000023659	TPH1 (ENSSHAG00000016519)	SAAL1 (ENSSHAG00000030904)	HPS5 (ENSSHAG00000016026)	GTF2H1 (ENSSHAG00000015946)	ENSSHAG00000025930	LDHC (ENSSHAG00000030723)	ENSSHAG00000029476	TSG101 (ENSSHAG00000015267)	ENSSHAG00000022059	ENSSHAG00000023698	SPTY2D1 (ENSSHAG00000015061)	ENSSHAG00000024232	TMEM86A (ENSSHAG00000022231)
Platypus	MODERN SPECIES	14	CYP2R1 (ENSOANG00000006368)	ENSOANG00000041034	INSC (ENSOANG00000030687)	ENSOANG00000001353	ENSOANG00000022345	ENSOANG00000050997	C11orf58 (ENSOANG00000036260)	PLEKHA7 (ENSOANG00000007688)	RPS13 (ENSOANG00000007687)	PIK3C2A (ENSOANG00000007685)	NUCB2 (ENSOANG00000007683)	ENSOANG00000045336	ABCC8 (ENSOANG00000007680)	ENSOANG00000007679	OTOG (ENSOANG00000010676)	ENSOANG00000047737 ##22	KCNC1 (ENSOANG00000003052)	ENSOANG00000044323	TPH1 (ENSOANG00000050270)	ENSOANG00000000811	SAAL1 (ENSOANG00000000809)	ENSOANG00000000595	ENSOANG00000044149	HPS5 (ENSOANG00000044228)	GTF2H1 (ENSOANG00000014982)	LDHA (ENSOANG00000048733)	ENSOANG00000008367	TSG101 (ENSOANG00000008368)	UEVLD (ENSOANG00000050347)	SPTY2D1 (ENSOANG00000051208)	TMEM86A (ENSOANG00000049158)
Actinopterygii	ANCESTRAL SPECIES	36	ENSGT00940000156433.B	ENSGT01030000235062	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00940000154404.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00530000064489	ENSGT01060000250538	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000166133	ENSGT00390000003368	ENSGT00970000193609	ENSGT00940000165906	ENSGT00940000158152	ENSGT00940000164224	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00940000160210	ENSGT00940000158688	ENSGT00940000159534
Neopterygii	ANCESTRAL SPECIES	79											ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000158175	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b ##22	ENSGT01050000244900.a.a.a.a.a ##25	ENSGT00390000009310	ENSGT00940000166133	ENSGT00390000003368	ENSGT00970000193609	ENSGT00940000165906	ENSGT00940000158152	ENSGT00940000164224	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00940000160210	ENSGT00940000158688
Osteoglossocephalai	ANCESTRAL SPECIES	105	ENSGT01060000248595.b.a.b.a.n.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916	ENSGT00940000160004	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000158477.a.a	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00950000182959.b.a.b ##22	ENSGT00940000158477.a.b	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234990	ENSGT00940000153901.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234858	ENSGT00940000160892	ENSGT00390000017767.a.b	ENSGT00940000155733.a.a
Osteoglossiformes	ANCESTRAL SPECIES	63	ENSGT00940000164715	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b.a	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916.d	ENSGT00940000160004	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00940000157490	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000158477.a.a	ENSGT00940000167812.a	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234858	ENSGT00940000160892	ENSGT00390000017767.a.b	ENSGT00940000155733.a.a	ENSGT00940000164955.a	ENSGT00940000162463	ENSGT00940000160974.b.b	ENSGT00940000159701	ENSGT00390000014700.b.a.a.c	ENSGT00940000159464
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	2	BRSK2 (ENSSFOG00015011235)	ABTB2 (ENSSFOG00015011282)	B4GALNT4 (ENSSFOG00015011329)	ENSSFOG00015011350	igf2b (ENSSFOG00015029596)	NAP1L4 (ENSSFOG00015011392)	phlda2 (ENSSFOG00015011437)	slc22a18 (ENSSFOG00015011420)	OSBPL5 (ENSSFOG00015011457)	ENSSFOG00015011522	PTPN5 (ENSSFOG00015011591)	DUSP8 (ENSSFOG00015027508)	MOB2 (ENSSFOG00015011693)	ENSSFOG00015011743	ENSSFOG00015011750	myod1 (ENSSFOG00015029499) ##22	tnnt3a (ENSSFOG00015011790)	ENSSFOG00015011834	ENSSFOG00015011872	CTSD (ENSSFOG00015011884)	DRD4 (ENSSFOG00015011928)	BET1L (ENSSFOG00015024284)	ric8a (ENSSFOG00015028913)	ENSSFOG00015011996	lrp5 (ENSSFOG00015012061)	KMT5B (ENSSFOG00015012132)	TP53I11 (ENSSFOG00015032032)	CD82 (ENSSFOG00015012215)	tspan18b (ENSSFOG00015012258)	ext2 (ENSSFOG00015012303)	ALX4 (ENSSFOG00015027263)
Asian bonytongue	MODERN SPECIES	20	ENSSFOG00015031340	ENSSFOG00015002434	CPT1A (ENSSFOG00015002348)	cars1 (ENSSFOG00015002202)	nap1l4b (ENSSFOG00015002142)	phlda2 (ENSSFOG00015002113)	OSBPL5 (ENSSFOG00015002010)	PTPN5 (ENSSFOG00015001826)	dusp8a (ENSSFOG00015025183)	MOB2 (ENSSFOG00015001705)	kcnj11 (ENSSFOG00015025143)	abcc8 (ENSSFOG00015001504)	ush1c (ENSSFOG00015001489)	OTOG (ENSSFOG00015025460)	zgc:172145 (ENSSFOG00015001401)	myod1 (ENSSFOG00015001375) ##22	TNNT3 (ENSSFOG00015001321)	ENSSFOG00015001312	ENSSFOG00015001301	tnni2a.4 (ENSSFOG00015001189)	tnni2a.2 (ENSSFOG00015001029)	ENSSFOG00015000969	SYT8 (ENSSFOG00015000963)	ENSSFOG00015000957	ctsd (ENSSFOG00015000892)	ENSSFOG00015000887	antkmt (ENSSFOG00015026035)	IFT140 (ENSSFOG00015000759)	cstpp1 (ENSSFOG00015000701)	fibinb (ENSSFOG00015000695)	bbox1 (ENSSFOG00015000689)
Clupeocephala	ANCESTRAL SPECIES	564															ENSGT00940000157490	ENSGT00950000182959.b.b ##22	ENSGT00940000158477.a.a	ENSGT01030000234588.b.b.b.b.a.b.b
Otomorpha	ANCESTRAL SPECIES	51	ENSGT00940000160745.d	ENSGT00390000007739	ENSGT00940000164715.b	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916	ENSGT00940000160004.f	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000158477.a.b.a	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.g.a	ENSGT00940000177178	ENSGT01030000234588.b.b.b.b.a.b.a.h	ENSGT01030000234588.b.b.b.b.a.b.a.g.b	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00390000017767.a.b	ENSGT00950000182839.B.a.a.l ##33	ENSGT00940000155871	ENSGT00530000065415
Otophysi	ANCESTRAL SPECIES	85	ENSGT00950000182885.C.a	ENSGT00940000160745.d	ENSGT00390000007739	ENSGT00940000164715.b	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000160004.f	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000158477.a.b.a	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.g.a	ENSGT01030000234588.b.b.b.b.a.b.a.g.b	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00390000017767.a.b	ENSGT00950000182839.B.a.a.l ##33	ENSGT00940000155871	ENSGT00530000065415	ENSGT00390000011116	ENSGT00940000158339
Characiphysae	ANCESTRAL SPECIES	57	ENSGT00950000182885.C.a	ENSGT00940000160745.d	ENSGT00390000007739	ENSGT00940000164715.b	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000160004.f	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000158477.a.b.a	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.g.a	ENSGT01030000234588.b.b.b.b.a.b.a.g.b	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00940000158339	ENSGT00390000011116	ENSGT00530000065415	ENSGT00940000155871	ENSGT00950000182839.B.a.a.l ##33	ENSGT00390000017767.a.b
Characiphysae_b	ANCESTRAL SPECIES	32	ENSGT00950000182885.C.a	ENSGT00940000160745.d	ENSGT00390000007739	ENSGT00940000164715.b	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000160004.f	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000158477.a.b.a	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.g.a	ENSGT01030000234588.b.b.b.b.a.b.a.g.b	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00940000158339	ENSGT00390000011116	ENSGT00530000065415	ENSGT00940000155871	ENSGT00950000182839.B.a.a.l ##33	ENSGT00390000017767.a.b
Characoidei	ANCESTRAL SPECIES	134										ENSGT00940000160004.f	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626.`b.a	ENSGT00940000156626.`b.b	ENSGT00950000183002.A	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000158477.a.b.a	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.g.a	ENSGT01030000234588.b.b.b.b.a.b.a.g.b	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00940000158339	ENSGT00390000011116	ENSGT00530000065415	ENSGT00940000155871	ENSGT00950000182839.B.a.a.l ##33	ENSGT00390000017767.a.b
Mexicana tetra	MODERN SPECIES	23	ENSAMXG00000041914	IGSF22 (ENSAMXG00000016613)	tmem86a (ENSAMXG00000016631)	spty2d1 (ENSAMXG00000016641)	ENSAMXG00000016647	ENSAMXG00000016679	th (ENSAMXG00000016719)	igf2b (ENSAMXG00000031616)	ENSAMXG00000032145	dusp8a (ENSAMXG00000016953)	mob2a (ENSAMXG00000000963)	kcnj11 (ENSAMXG00000016977)	abcc8 (ENSAMXG00000016995)	ush1c (ENSAMXG00000017009)	zgc:172145 (ENSAMXG00000037676)	myod1 (ENSAMXG00000017040) ##22	tnnt3a (ENSAMXG00000017067)	ENSAMXG00000034923	ENSAMXG00000042220	tnni2a.4 (ENSAMXG00000039743)	tnni2a.3 (ENSAMXG00000017131)	ENSAMXG00000041046	kras (ENSAMXG00000017217)	RASSF8 (ENSAMXG00000017235) ##33	ENSAMXG00000017252	ENSAMXG00000037992	ENSAMXG00000017283	ENSAMXG00000037266	ENSAMXG00000042943	ENSAMXG00000038653	ENSAMXG00000042542
Red-bellied piranha	MODERN SPECIES	65											ENSPNAG00000027977	dusp8a (ENSPNAG00000027990)	abcc8 (ENSPNAG00000006867)	ush1c (ENSPNAG00000004979)	zgc:172145 (ENSPNAG00000005729)	myod1 (ENSPNAG00000006274) ##22	tnnt3a (ENSPNAG00000005106)	ENSPNAG00000028344	ENSPNAG00000006385	tnni2a.4 (ENSPNAG00000028390)	tnni2a.3 (ENSPNAG00000006873)	tnni2a.2 (ENSPNAG00000028418)	tnni2a.1 (ENSPNAG00000006788)	ENSPNAG00000028459	SYT8 (ENSPNAG00000028474)	pdcd2l (ENSPNAG00000004367)	banp (ENSPNAG00000028568)	ENSPNAG00000006076	kras (ENSPNAG00000028629)	RASSF8 (ENSPNAG00000028666) ##33	ENSPNAG00000004742
Clupeiformes	ANCESTRAL SPECIES	71	ENSGT00940000158682	ENSGT00940000154837	ENSGT00530000063553.b.b	ENSGT00940000168336	ENSGT00950000183151.a.a.b.b	ENSGT00390000007739	ENSGT00940000160745.d	ENSGT00940000164715.b	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00440000039564.a.b.i	ENSGT00940000159535.i	ENSGT00990000203615.a.a.a.b.d	ENSGT00940000156626	ENSGT00950000183002.A.f	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000158477.a.b.a	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.g.a	ENSGT01030000234588.b.b.b.b.a.b.a.h	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00390000017767.a.b	ENSGT00950000182839.B.a.a.l ##33	ENSGT00940000155871	ENSGT00530000065415	ENSGT00390000011116	ENSGT00940000158339
Denticle herring	MODERN SPECIES	8	sf3b3 (ENSDCDG00000014868)	mrpl23 (ENSDCDG00000014864)	igf2b (ENSDCDG00000014862)	ENSDCDG00000014858	ENSDCDG00000013856	ENSDCDG00000013798	phlda2 (ENSDCDG00000013795)	OSBPL5 (ENSDCDG00000008088)	ENSDCDG00000007814	dusp8a (ENSDCDG00000007781)	mob2a (ENSDCDG00000007735)	kcnj11 (ENSDCDG00000007731)	abcc8 (ENSDCDG00000007647)	ush1c (ENSDCDG00000007075)	zgc:172145 (ENSDCDG00000006912)	MYOD1 (ENSDCDG00000006890) ##22	ENSDCDG00000006877	ENSDCDG00000006819	tnni2a.4 (ENSDCDG00000005740)	TNNI2 (ENSDCDG00000005638)	ENSDCDG00000031186	ENSDCDG00000031179	tnni2a.2 (ENSDCDG00000031178)	tnni2a.1 (ENSDCDG00000031175)	ENSDCDG00000031173	SYT8 (ENSDCDG00000031171)	ENSDCDG00000031170	RASSF8 (ENSDCDG00000031168) ##33	kras (ENSDCDG00000031166)	ENSDCDG00000031164	banp (ENSDCDG00000031160)
Euteleosteomorpha	ANCESTRAL SPECIES	21	ENSGT00940000156469.a	ENSGT00390000009456	ENSGT00420000029847	ENSGT00940000157021	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000010961.c	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00920000149457	ENSGT00950000182959.b.b ##22	ENSGT00940000158477.a.b	ENSGT00940000167812	ENSGT00940000177178	ENSGT00940000153901.a.b.b	ENSGT01030000234990	ENSGT00940000177294	ENSGT00940000153901.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00390000017767.a.b	ENSGT00940000155733.a.a	ENSGT00940000164955.a
Acanthomorphata	DUPLICATION
Acanthomorphata	DUPLICATION
Acanthomorphata	ANCESTRAL SPECIES	84	ENSGT00420000029847	ENSGT00940000157021	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000010961.c	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT01100000264203	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00920000149457	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000169557	ENSGT00940000177178	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT00940000180774	ENSGT01030000234588.b.b.b.b.a.b.a.c.a	ENSGT00940000153901.a.b.b	ENSGT00940000167812	ENSGT01020000231746	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT00940000155529.A
Euacanthomorphacea	ANCESTRAL SPECIES	38	ENSGT00420000029847	ENSGT00940000157021	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000010961.c	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT01100000264203	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00920000149457	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000167812	ENSGT00940000180774	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT00940000153901.a.b.b	ENSGT00940000169557	ENSGT00940000177178	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892
Percomorphaceae	ANCESTRAL SPECIES	31	ENSGT00420000029847	ENSGT00940000157021	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000010961.c	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT01100000264203	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00920000149457	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000167812	ENSGT00940000180774	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT00940000153901.a.b.b	ENSGT00940000169557	ENSGT00940000177178	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892
Percomorphaceae_B	ANCESTRAL SPECIES	5	ENSGT00390000009456	ENSGT00420000029847	ENSGT00940000157021	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000010961.c	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00920000149457	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000167812	ENSGT00940000180774	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT00940000153901.a.b.b	ENSGT00940000169557	ENSGT00940000177178	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.d	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858
Ovalentaria	ANCESTRAL SPECIES	7	ENSGT01100000265728	ENSGT00390000009456	ENSGT00420000029847	ENSGT00940000157021	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00920000149457	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000153901.a.b.b	ENSGT00940000169557	ENSGT00940000177178	ENSGT00940000167812	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT00940000155529.A
Atherinomorphae	ANCESTRAL SPECIES	32	ENSGT00940000158339	ENSGT00940000156131.a.a	ENSGT00550000075019	ENSGT00940000156469.a	ENSGT01100000265728	ENSGT00390000009456	ENSGT00420000029847	ENSGT00940000157021	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000169557	ENSGT00940000177178	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT00940000160892	ENSGT00550000074844
Cyprinodontiformes	ANCESTRAL SPECIES	34	ENSGT00550000075019	ENSGT00940000156469.a	ENSGT01100000265728	ENSGT00390000009456	ENSGT00420000029847	ENSGT00940000157021	ENSGT00390000010961.d	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000169557	ENSGT00940000177178	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844
Cyprinodontoidei	ANCESTRAL SPECIES	7	ENSGT00730000111146	ENSGT00940000157236.j	ENSGT00940000160682.b.c.a	ENSGT01030000234567.B.a.a.b.a.a.c.a	ENSGT00940000156976.gb	ENSGT00940000164955.b	ENSGT00390000010968.a	ENSGT00390000017767.a.b	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000169557	ENSGT00940000177178	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234858	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT00940000160892	ENSGT00550000074844	ENSGT00940000164853.a.b	ENSGT00940000159701	ENSGT00940000160208	ENSGT00940000154527.a.a.b.b
Poeciliinae	ANCESTRAL SPECIES	3	ENSGT00550000075044	ENSGT00390000010852	ENSGT00390000016791	ENSGT00390000017697.a	ENSGT00940000156976.gb	ENSGT00940000164955.b	ENSGT00390000010968.a	ENSGT00390000017767.a.b	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000155997.lb.b	ENSGT00940000157572.a.b	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000169557	ENSGT00940000177178	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT00940000164853.a.b	ENSGT00940000159701	ENSGT00940000160208	ENSGT00940000154527.a.a.b.b	ENSGT00940000158686
Poecilia	ANCESTRAL SPECIES	5	ENSGT00550000075044	ENSGT00390000010852	ENSGT00390000016791	ENSGT00390000017697.a	ENSGT00940000156976.gb	ENSGT00940000164955.b	ENSGT00390000010968.a	ENSGT00390000017767.a.b	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000155997.lb.b	ENSGT00940000157572.a.b	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000153901.a.b.b	ENSGT00940000169557	ENSGT00940000177178	ENSGT00940000167812	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT01020000231746	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT00940000164853.a.b	ENSGT00940000159701	ENSGT00940000160208
NAME_6	ANCESTRAL SPECIES	114					ENSGT00940000156976.gb	ENSGT00940000164955.b	ENSGT00390000010968.a	ENSGT00390000017767.a.b	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000155997.lb.b	ENSGT00940000157572.a.b	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000153901.a.b.b	ENSGT00940000167812	ENSGT00940000169557	ENSGT00940000177178	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT00940000160892	ENSGT00550000074844	ENSGT00940000164853.a.b	ENSGT00940000159701	ENSGT00940000160208	ENSGT00940000154527.a.a.b.b	ENSGT00940000154189.B
Amazon molly	MODERN SPECIES	474				ENSPFOG00000012648	CERK (ENSPFOG00000012654)	ENSPFOG00000012663	GRAMD4 (ENSPFOG00000012715)	ENSPFOG00000012969	RFWD3 (ENSPFOG00000012973)	GLG1 (ENSPFOG00000013019)	ENSPFOG00000013224	urahb (ENSPFOG00000013262)	ENSPFOG00000013283	CACNA2D4 (ENSPFOG00000013433)	LRTM2 (ENSPFOG00000013516)	myod1 (ENSPFOG00000013532) ##22	tnnt3a (ENSPFOG00000013555)	ENSPFOG00000013655	ENSPFOG00000024450	TNNI2 (ENSPFOG00000013698)	TNNI2 (ENSPFOG00000013744)	TNNI2 (ENSPFOG00000023624)	tnni2a.2 (ENSPFOG00000013772)	SYT8 (ENSPFOG00000013827)	dldh (ENSPFOG00000013896)	ENSPFOG00000013986	deaf1 (ENSPFOG00000014257)	BET1L (ENSPFOG00000014322)	ENSPFOG00000014334	ENSPFOG00000014390	ENSPFOG00000014424
Sailfin molly	MODERN SPECIES	1263																myod1 (ENSPLAG00000001610) ##22	tnnt3a (ENSPLAG00000001599)	ENSPLAG00000001576	ENSPLAG00000001570	ENSPLAG00000001562	ENSPLAG00000001556	tnni2a.2 (ENSPLAG00000001553)	SYT8 (ENSPLAG00000001548)	dldh (ENSPLAG00000001542)	ENSPLAG00000001521
Guppy	MODERN SPECIES	458	znf277 (ENSPREG00000001303)	spg11 (ENSPREG00000001354)	oard1 (ENSPREG00000001426)	ciao2a (ENSPREG00000001457)	CERK (ENSPREG00000001487)	ENSPREG00000001519	GRAMD4 (ENSPREG00000001575)	RFWD3 (ENSPREG00000001734)	GLG1 (ENSPREG00000001759)	ENSPREG00000001828	ENSPREG00000001846	ENSPREG00000001880	ENSPREG00000001915	ENSPREG00000001932	ENSPREG00000001945	myod1 (ENSPREG00000001997) ##22	tnnt3a (ENSPREG00000002040)	ENSPREG00000002107	ENSPREG00000002125	TNNI2 (ENSPREG00000002134)	ENSPREG00000002158	ENSPREG00000002186	ENSPREG00000002208	ENSPREG00000002225	SYT8 (ENSPREG00000002242)	dldh (ENSPREG00000002267)	ENSPREG00000002322	deaf1 (ENSPREG00000002403)	ENSPREG00000002425	ENSPREG00000002453	ENSPREG00000002490
Platyfish	MODERN SPECIES	11	ANKRD27 (ENSXMAG00000009561)	ENSXMAG00000020908	faap24 (ENSXMAG00000024585)	SLC7A10 (ENSXMAG00000012176)	DUS2 (ENSXMAG00000012268)	pdcd2l (ENSXMAG00000012292)	ENSXMAG00000012291	ENSXMAG00000023358	immp2l (ENSXMAG00000029951)	GPR37 (ENSXMAG00000000281)	ENSXMAG00000000273	CPA1 (ENSXMAG00000008217)	ENSXMAG00000002743	ENSXMAG00000025768	CACNA2D4 (ENSXMAG00000029376)	myod1 (ENSXMAG00000026443) ##22	tnnt3a (ENSXMAG00000007434)	ENSXMAG00000026868	ENSXMAG00000001183	TNNI2 (ENSXMAG00000005048)	TNNI2 (ENSXMAG00000013411)	tnni2a.2 (ENSXMAG00000013409)	ENSXMAG00000029853	SYT8 (ENSXMAG00000013405)	dldh (ENSXMAG00000013397)	ENSXMAG00000029031	ENSXMAG00000013383	deaf1 (ENSXMAG00000013352)	BET1L (ENSXMAG00000023928)	atp2b1b (ENSXMAG00000011746)	ENSXMAG00000011708
NAME_4	ANCESTRAL SPECIES	72	ENSGT00730000111146	ENSGT00940000157236.j	ENSGT00940000160682.b.c.a	ENSGT01030000234567.B.a.a.b.a.a.c.a	ENSGT00940000156976.gb	ENSGT00940000178524	ENSGT00390000010968.a	ENSGT00390000017767.a.b	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b.b	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT00940000164853.a.b	ENSGT00940000159701	ENSGT00940000160208	ENSGT00940000154527.a.a.b.b	ENSGT00940000163716.c.a.a.a
Sheepshead minnow	MODERN SPECIES	545	PEAK1 (ENSCVAG00000019186)	syt12 (ENSCVAG00000019217)	cat (ENSCVAG00000019252)	ENSCVAG00000019263	ENSCVAG00000019275	TAFA5 (ENSCVAG00000019290)	CERK (ENSCVAG00000019307)	ENSCVAG00000019324	GRAMD4 (ENSCVAG00000019434)	RFWD3 (ENSCVAG00000019442)	GLG1 (ENSCVAG00000019526)	ENSCVAG00000019533	ENSCVAG00000019550	LRTM2 (ENSCVAG00000019558)	CACNA2D4 (ENSCVAG00000019847)	myod1 (ENSCVAG00000019855) ##22	tnnt3a (ENSCVAG00000019864)	ENSCVAG00000019873	ENSCVAG00000000969	TNNI2 (ENSCVAG00000019892)	TNNI2 (ENSCVAG00000019930)	TNNI2 (ENSCVAG00000019942)	tnni2a.2 (ENSCVAG00000019957)
Mummichog	MODERN SPECIES	2205			ENSFHEG00000008420	ENSFHEG00000008434	ftsj1 (ENSFHEG00000008464)	brd1b (ENSFHEG00000008558)	TAFA5 (ENSFHEG00000008597)	ENSFHEG00000008607	CERK (ENSFHEG00000008626)	GRAMD4 (ENSFHEG00000008727)	ENSFHEG00000008745	urahb (ENSFHEG00000008753)	ENSFHEG00000008763	LRTM2 (ENSFHEG00000008865)	ENSFHEG00000008951	myod1 (ENSFHEG00000008982) ##22	tnnt3a (ENSFHEG00000009020)	ENSFHEG00000009127	ENSFHEG00000009147	ENSFHEG00000009155	ENSFHEG00000009159	TNNI2 (ENSFHEG00000009184)	TNNI2 (ENSFHEG00000009222)	tnni2a.2 (ENSFHEG00000009249)	ENSFHEG00000009273	SYT8 (ENSFHEG00000009291)	dldh (ENSFHEG00000009356)	ENSFHEG00000009421	deaf1 (ENSFHEG00000009441)	BET1L (ENSFHEG00000009463)	ENSFHEG00000009504
Aplocheiloidei	ANCESTRAL SPECIES																	ENSGT00950000182959.b.b.e.a ##22
Mangrove rivulus	MODERN SPECIES	525															ANO1 (ENSKMAG00000013791)	myod1 (ENSKMAG00000013759) ##22	ENSKMAG00000013740	dldh (ENSKMAG00000013669)
Oryzias	ANCESTRAL SPECIES	63				ENSGT00550000075019	ENSGT00940000156131.a.a	ENSGT00940000158339	ENSGT00550000075044	ENSGT00390000010852	ENSGT00940000160625.r.a	ENSGT00940000153229.A.a.a.a	ENSGT00940000165218.b	ENSGT00390000011262.e.a	ENSGT00390000008931	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT00940000161262.b	ENSGT01030000234648.a.b.a.a.b.cb.a	ENSGT00390000018285	ENSGT01100000263518.B.b.b.a	ENSGT01020000230364.a.a.b.a.y.b
Oryzias_b	ANCESTRAL SPECIES		ENSGT00940000155465.j	ENSGT00390000005430	ENSGT00940000155391.a.a	ENSGT00550000075044	ENSGT00940000158339	ENSGT00940000156131.a.a	ENSGT00550000075019	ENSGT00390000010852	ENSGT00940000160625.r.a	ENSGT00940000153229.A.a.a.a	ENSGT00940000165218.b	ENSGT00390000011262.e.a	ENSGT00390000008931	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000153901.a.b.b	ENSGT00940000167812	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT00940000160892	ENSGT00550000074844	ENSGT00940000161262.b	ENSGT01030000234648.a.b.a.a.b.cb.a	ENSGT00390000018285	ENSGT01100000263518.B.b.b.a	ENSGT01020000230364.a.a.b.a.y.b	ENSGT01020000230364.a.a.b.b
Indian medaka	MODERN SPECIES	15	ENSOMEG00000020776	ENSOMEG00000020736	immp2l (ENSOMEG00000000549)	ENSOMEG00000020675	ENSOMEG00000020663	DUS2 (ENSOMEG00000020631)	znf277 (ENSOMEG00000020520)	ENSOMEG00000020489	urahb (ENSOMEG00000020448)	ENSOMEG00000020438	GLG1 (ENSOMEG00000020401)	RFWD3 (ENSOMEG00000020218)	ENSOMEG00000020159	ENSOMEG00000020139	CACNA2D4 (ENSOMEG00000000936)	myod1 (ENSOMEG00000020091) ##22	tnnt3a (ENSOMEG00000020063)	ENSOMEG00000019976	ENSOMEG00000019864	TNNI2 (ENSOMEG00000019856)	TNNI2 (ENSOMEG00000019805)	tnni2a.2 (ENSOMEG00000019778)	tnni2a.1 (ENSOMEG00000019735)	ENSOMEG00000019701
Javanese ricefish	MODERN SPECIES	20	ENSOJAG00000001231	ENSOJAG00000001357	ENSOJAG00000001918	ENSOJAG00000001977	immp2l (ENSOJAG00000002152)	ENSOJAG00000002177	ENSOJAG00000002187	DUS2 (ENSOJAG00000002235)	znf277 (ENSOJAG00000002400)	ENSOJAG00000002852	urahb (ENSOJAG00000002909)	ENSOJAG00000002895	GLG1 (ENSOJAG00000002985)	RFWD3 (ENSOJAG00000003173)	ENSOJAG00000003382	myod1 (ENSOJAG00000003402) ##22	tnnt3a (ENSOJAG00000003454)	ENSOJAG00000003546	ENSOJAG00000003563	ENSOJAG00000003599	TNNI2 (ENSOJAG00000003627)	TNNI2 (ENSOJAG00000003725)	tnni2a.1 (ENSOJAG00000003772)	SYT8 (ENSOJAG00000003818)	dldh (ENSOJAG00000003976)	CHST1 (ENSOJAG00000004747)	grm8b (ENSOJAG00000004853)	pot1 (ENSOJAG00000005624)	GPR37 (ENSOJAG00000005638)	ENSOJAG00000005647	HYAL4 (ENSOJAG00000005762)
Oryzias_a	ANCESTRAL SPECIES	88				ENSGT00550000075019	ENSGT00940000156131.a.a	ENSGT00940000158339	ENSGT00550000075044	ENSGT00390000010852	ENSGT00940000160625.r.a	ENSGT00940000153229.A.a.a.a	ENSGT00940000165218.b	ENSGT00390000011262.e.a	ENSGT00390000008931	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT00390000014326	ENSGT01020000230364.a.b	ENSGT01020000230364.a.a.b.b	ENSGT01020000230364.a.a.b.a.y.b	ENSGT01100000263518.B.b.b.a	ENSGT00390000018285	ENSGT01030000234648.a.b.a.a.b.cb.a	ENSGT00940000161262.b
Japanese Medaka HdrR	MODERN SPECIES	20	DUS2 (ENSORLG00000000833)	ENSORLG00000027634	pdcd2l (ENSORLG00000000817)	immp2l (ENSORLG00000000811)	znf277 (ENSORLG00000000804)	ENSORLG00000000787	urahb (ENSORLG00000029953)	ENSORLG00000024074	ENSORLG00000000773	ENSORLG00000024437	GLG1 (ENSORLG00000000767)	RFWD3 (ENSORLG00000000737)	ENSORLG00000025119	ENSORLG00000027522	ENSORLG00000000721	myod1 (ENSORLG00000000694) ##22	tnnt3a (ENSORLG00000000678)	ENSORLG00000025446	ENSORLG00000000599	ENSORLG00000024559	TNNI2 (ENSORLG00000000591)	TNNI2 (ENSORLG00000000559)	tnni2a.2 (ENSORLG00000024626)	tnni2a.1 (ENSORLG00000000545)	ENSORLG00000000533	hyal6 (ENSORLG00000000524)	HYAL4 (ENSORLG00000000515)	ENSORLG00000000501	GPR37 (ENSORLG00000027795)	pot1 (ENSORLG00000000493)	grm8b (ENSORLG00000000478)
Chinese medaka	MODERN SPECIES	318					DUS2 (ENSOSIG00000009224)	ENSOSIG00000009503	znf277 (ENSOSIG00000009505)	ENSOSIG00000009549	urahb (ENSOSIG00000009559)	ENSOSIG00000009561	GLG1 (ENSOSIG00000009567)	RFWD3 (ENSOSIG00000009667)	ENSOSIG00000009670	LRTM2 (ENSOSIG00000009671)	ENSOSIG00000009673	myod1 (ENSOSIG00000009675) ##22	tnnt3a (ENSOSIG00000009699)	ENSOSIG00000009705	ENSOSIG00000009709	TNNI2 (ENSOSIG00000009722)	tnni2a.2 (ENSOSIG00000009737)	TNNI2 (ENSOSIG00000009747)
Ovalentaria_B	ANCESTRAL SPECIES	3	ENSGT01100000265728	ENSGT00390000009456	ENSGT00420000029847	ENSGT00940000157021	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00920000149457	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT00940000167812	ENSGT00940000177178	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT00940000155529.A
Cichlidae	ANCESTRAL SPECIES	34	ENSGT00550000075019	ENSGT00940000156469.a	ENSGT00390000009456	ENSGT00420000029847	ENSGT00940000157021	ENSGT00390000016453.d	ENSGT00390000010961.d	ENSGT00390000016453.c	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT00940000169557	ENSGT00940000177178	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT01040000240400.c.a.b.a.b.a.a.b.b	ENSGT00530000063823.b.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	24	ENSGT00390000001622	ENSGT00940000159278	ENSGT00940000158705	ENSGT00510000048902.b	ENSGT00530000064251	ENSGT00940000164605	ENSGT00390000013269	ENSGT00390000016453.c	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT00940000177178	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT01040000240400.c.a.a	ENSGT00530000063823.b.a	ENSGT00940000166187
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	30	ENSGT00390000001622	ENSGT00940000159278	ENSGT00940000158705	ENSGT00510000048902.b	ENSGT00530000064251	ENSGT00940000164605	ENSGT00390000013269	ENSGT00390000016453.c	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT00940000177178	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT01040000240400.c.a.a	ENSGT00530000063823.b.a	ENSGT00940000166187
Haplochromini	ANCESTRAL SPECIES	27	ENSGT00390000001622	ENSGT00940000159278	ENSGT00940000158705.g	ENSGT00510000048902.b	ENSGT00530000064251	ENSGT00940000164605	ENSGT00390000013269	ENSGT00390000016453.c	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT01040000240400.c.a.a	ENSGT00530000063823.b.a	ENSGT00940000166187	ENSGT01030000234550.a.a.d.a.a.h
Haplochromini_A	ANCESTRAL SPECIES	25	ENSGT00390000001622	ENSGT00940000159278	ENSGT00940000158705.g	ENSGT00510000048902.b	ENSGT00530000064251	ENSGT00940000164605	ENSGT00390000013269	ENSGT00390000016453.c	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000155997.lb.b	ENSGT00940000157572.a.b	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT00940000177178	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT01040000240400.c.a.a	ENSGT00530000063823.b.a	ENSGT00940000166187
Haplochromini_B	ANCESTRAL SPECIES	30	ENSGT00940000159278	ENSGT00940000158705.h	ENSGT00940000158705.g	ENSGT00510000048902.b	ENSGT00530000064251	ENSGT00940000164605	ENSGT00390000013269	ENSGT00390000016453.c	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000155997.lb.b	ENSGT00940000157572.a.b	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT00940000177178	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT01040000240400.c.a.a	ENSGT00530000063823.b.a	ENSGT00940000166187
Eastern happy	MODERN SPECIES	19	ENSACLG00000002725	ldhd (ENSACLG00000002704)	ENSACLG00000002697	arpin (ENSACLG00000002677)	anpeplb (ENSACLG00000002651)	MLKL (ENSACLG00000002629)	RFWD3 (ENSACLG00000002612)	GLG1 (ENSACLG00000002404)	ENSACLG00000002399	ENSACLG00000002396	urahb (ENSACLG00000002381)	ENSACLG00000002306	ENSACLG00000002295	LRTM2 (ENSACLG00000002286)	CACNA2D4 (ENSACLG00000002230)	myod1 (ENSACLG00000001809) ##22	tnnt3a (ENSACLG00000001727)	ENSACLG00000001721	TNNI2 (ENSACLG00000001715)	TNNI2 (ENSACLG00000001689)	ENSACLG00000001643	TNNI2 (ENSACLG00000001597)	tnni2a.2 (ENSACLG00000001585)	ENSACLG00000001563	ENSACLG00000001555	tnni2a.1 (ENSACLG00000001530)	ENSACLG00000001500	SYT8 (ENSACLG00000001358)	dldh (ENSACLG00000001270)	ENSACLG00000001259	zfpm1 (ENSACLG00000001201)
Zebra mbuna	MODERN SPECIES	1110	znrf1 (ENSMZEG00005015822)	ldhd (ENSMZEG00005015830)	ldhd (ENSMZEG00005015846)	ENSMZEG00005015876	arpin (ENSMZEG00005015899)	anpeplb (ENSMZEG00005015914)	si:dkey-12e7.1 (ENSMZEG00005015924)	MLKL (ENSMZEG00005015932)	RFWD3 (ENSMZEG00005015944)	GLG1 (ENSMZEG00005015951)	ENSMZEG00005015977	urahb (ENSMZEG00005016003)	ENSMZEG00005016011	CACNA2D4 (ENSMZEG00005016019)	LRTM2 (ENSMZEG00005016031)	myod1 (ENSMZEG00005016037) ##22	tnnt3a (ENSMZEG00005016043)	ENSMZEG00005016049	ENSMZEG00005016053	ENSMZEG00005016057	ENSMZEG00005016060	TNNI2 (ENSMZEG00005016067)	TNNI2 (ENSMZEG00005016076)	TNNI2 (ENSMZEG00005016082)	TNNI2 (ENSMZEG00005016090)	TNNI2 (ENSMZEG00005016101)	TNNI2 (ENSMZEG00005016110)	tnni2a.2 (ENSMZEG00005016116)	tnni2a.1 (ENSMZEG00005016126)	ENSMZEG00005016129	SYT8 (ENSMZEG00005016137)
P. nyererei	MODERN SPECIES	524	ENSPNYG00000020375	ndrg4 (ENSPNYG00000020344)	gins3 (ENSPNYG00000020324)	znrf1 (ENSPNYG00000020314)	ldhd (ENSPNYG00000020302)	ENSPNYG00000020285	arpin (ENSPNYG00000020274)	anpeplb (ENSPNYG00000020252)	RFWD3 (ENSPNYG00000020232)	GLG1 (ENSPNYG00000020129)	ENSPNYG00000020106	urahb (ENSPNYG00000020098)	ENSPNYG00000020007	LRTM2 (ENSPNYG00000019981)	CACNA2D4 (ENSPNYG00000019913)	myod1 (ENSPNYG00000019881) ##22	tnnt3a (ENSPNYG00000019816)	ENSPNYG00000019796	TNNI2 (ENSPNYG00000019789)	TNNI2 (ENSPNYG00000019768)	ENSPNYG00000019743	TNNI2 (ENSPNYG00000019723)	tnni2a.2 (ENSPNYG00000019708)	tnni2a.1 (ENSPNYG00000019446)	ENSPNYG00000019407	SYT8 (ENSPNYG00000019335)	dldh (ENSPNYG00000019274)
Burton s mouthbrooder	MODERN SPECIES	773								MLKL (ENSHBUG00000003517)	RFWD3 (ENSHBUG00000003543)	GLG1 (ENSHBUG00000003687)	ENSHBUG00000003716	urahb (ENSHBUG00000003742)	ENSHBUG00000003757	ENSHBUG00000003764	CACNA2D4 (ENSHBUG00000003834)	myod1 (ENSHBUG00000003854) ##22	tnnt3a (ENSHBUG00000003866)
Lyretail cichlid	MODERN SPECIES	429	ndrg4 (ENSNBRG00000021958)	gins3 (ENSNBRG00000021976)	znrf1 (ENSNBRG00000021991)	ldhd (ENSNBRG00000022004)	ENSNBRG00000022030	ENSNBRG00000022049	anpeplb (ENSNBRG00000022087)	si:dkey-12e7.1 (ENSNBRG00000022234)	MLKL (ENSNBRG00000022248)	RFWD3 (ENSNBRG00000022266)	GLG1 (ENSNBRG00000022286)	ENSNBRG00000022322	urahb (ENSNBRG00000022377)	ENSNBRG00000022400	ENSNBRG00000022414	myod1 (ENSNBRG00000022428) ##22	tnnt3a (ENSNBRG00000022442)	ENSNBRG00000022480	ENSNBRG00000000262	ENSNBRG00000000267	TNNI2 (ENSNBRG00000000275)	ENSNBRG00000000285	tnni2a.2 (ENSNBRG00000000291)	ENSNBRG00000000308	SYT8 (ENSNBRG00000000324)	dldh (ENSNBRG00000000346)	ENSNBRG00000000542	zfpm1 (ENSNBRG00000000569)
Nile tilapia	MODERN SPECIES	19	arpin (ENSONIG00000010834)	anpeplb (ENSONIG00000010823)	si:dkey-12e7.1 (ENSONIG00000010822)	MLKL (ENSONIG00000010820)	ENSONIG00000028219	RFWD3 (ENSONIG00000010818)	GLG1 (ENSONIG00000010813)	ENSONIG00000042116	ENSONIG00000038642	urahb (ENSONIG00000039662)	ENSONIG00000037724	ENSONIG00000010804	LRTM2 (ENSONIG00000010803)	CACNA2D4 (ENSONIG00000010799)	ENSONIG00000031210	myod1 (ENSONIG00000010796) ##22	tnnt3a (ENSONIG00000010794)	ENSONIG00000028193	ENSONIG00000033565	ENSONIG00000010790	tnni2a.4 (ENSONIG00000010787)	tnni2a.1 (ENSONIG00000010776)	ENSONIG00000029220	SYT8 (ENSONIG00000041185)	dldh (ENSONIG00000010769)	ENSONIG00000028992	ENSONIG00000030669	ENSONIG00000010767	zfpm1 (ENSONIG00000035110)	ENSONIG00000010760	ENSONIG00000034024
Midas cichlid	MODERN SPECIES	258																myod1 (ENSACIG00000014400) ##22	tnnt3a (ENSACIG00000014612)	ENSACIG00000014781	ENSACIG00000014797	ENSACIG00000014805	TNNI2 (ENSACIG00000014818)	TNNI2 (ENSACIG00000014837)	TNNI2 (ENSACIG00000014860)	tnni2a.2 (ENSACIG00000014981)	tnni2a.1 (ENSACIG00000015042)	ENSACIG00000015057	SYT8 (ENSACIG00000015081)	dldh (ENSACIG00000015096)	ENSACIG00000015126	ENSACIG00000015131	ENSACIG00000015187
Pomacentridae	ANCESTRAL SPECIES	68	ENSGT01100000265728	ENSGT00390000009456	ENSGT00420000029847	ENSGT00940000157021	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00920000149457	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000153901.a.b.b	ENSGT00940000167812	ENSGT00940000177178	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT00940000155529.A	ENSGT00390000013249
Pomacentridae_A	ANCESTRAL SPECIES	91	ENSGT01100000265728	ENSGT00390000009456	ENSGT00420000029847	ENSGT00940000157021	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00920000149457	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000153901.a.b.b	ENSGT00940000167812	ENSGT00940000177178	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.d	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT00940000155529.A
Amphiprion	ANCESTRAL SPECIES	115	ENSGT01100000265728	ENSGT00390000009456	ENSGT00420000029847	ENSGT00940000157021	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00920000149457	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000153901.a.b.b	ENSGT00940000167812	ENSGT00940000177178	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT00940000155529.A	ENSGT00390000013249
Clown anemonefish	MODERN SPECIES	3577	ENSAOCG00000016371	faap24 (ENSAOCG00000016379)	ENSAOCG00000016463	ANKRD27 (ENSAOCG00000016477)	ZDHHC7 (ENSAOCG00000016500)	TMED6 (ENSAOCG00000016508)	MLKL (ENSAOCG00000016528)	RFWD3 (ENSAOCG00000016548)	GLG1 (ENSAOCG00000001158)	ENSAOCG00000016858	urahb (ENSAOCG00000016894)	ENSAOCG00000016926	LRTM2 (ENSAOCG00000002572)	CACNA2D4 (ENSAOCG00000017314)	zgc:172145 (ENSAOCG00000017358)	myod1 (ENSAOCG00000017364) ##22	tnnt3a (ENSAOCG00000017403)	ENSAOCG00000017418	ENSAOCG00000017436	ENSAOCG00000017466	BNC1 (ENSAOCG00000017473)	st3gal3a (ENSAOCG00000017501)	ENSAOCG00000017508	rad54l (ENSAOCG00000017576)	ENSAOCG00000017592	ARHGAP39 (ENSAOCG00000017664)	ENSAOCG00000017704	rad23ab (ENSAOCG00000017747)	EPS15L1 (ENSAOCG00000017804)	klf2a (ENSAOCG00000017814)	cherp (ENSAOCG00000017846)
Orange clownfish	MODERN SPECIES	18	faap24 (ENSAPEG00000015042)	ENSAPEG00000015105	ANKRD27 (ENSAPEG00000015258)	ZDHHC7 (ENSAPEG00000015293)	TMED6 (ENSAPEG00000015317)	MLKL (ENSAPEG00000015334)	RFWD3 (ENSAPEG00000015379)	GLG1 (ENSAPEG00000015395)	ENSAPEG00000015507	urahb (ENSAPEG00000015634)	ENSAPEG00000015651	CACNA2D4 (ENSAPEG00000015687)	LRTM2 (ENSAPEG00000016139)	ENSAPEG00000016163	tnnt3a (ENSAPEG00000016176)	myod1 (ENSAPEG00000016219) ##22	ENSAPEG00000016238	ENSAPEG00000016255	ENSAPEG00000016264	TNNI2 (ENSAPEG00000016276)	TNNI2 (ENSAPEG00000016303)	TNNI2 (ENSAPEG00000016331)	TNNI2 (ENSAPEG00000016355)	tnni2a.2 (ENSAPEG00000016369)	tnni2a.1 (ENSAPEG00000016379)	ENSAPEG00000016387	SYT8 (ENSAPEG00000016419)	dldh (ENSAPEG00000016431)	ENSAPEG00000016488	ENSAPEG00000016522	aass (ENSAPEG00000016653)
Spiny chromis	MODERN SPECIES	1869																myod1 (ENSAPOG00000015663) ##22	tnnt3a (ENSAPOG00000015627)	ENSAPOG00000015572	ENSAPOG00000015562	ENSAPOG00000015557
Bicolor damselfish	MODERN SPECIES	478												ENSSPAG00000005219	CACNA2D4 (ENSSPAG00000005360)	ENSSPAG00000006900	ENSSPAG00000006936	myod1 (ENSSPAG00000006959) ##22	tnnt3a (ENSSPAG00000006984)	ENSSPAG00000007014	ENSSPAG00000007019	TNNI2 (ENSSPAG00000007029)	ENSSPAG00000007042	ENSSPAG00000007073	ENSSPAG00000007079	tnni2a.2 (ENSSPAG00000007090)	tnni2a.1 (ENSSPAG00000007097)	ENSSPAG00000007118	SYT8 (ENSSPAG00000007134)	dldh (ENSSPAG00000007152)
Percomorphaceae_C	ANCESTRAL SPECIES	5	ENSGT00390000009456	ENSGT00420000029847	ENSGT00940000157021	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000010961.c	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00920000149457	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000167812	ENSGT00940000177178	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT00940000155529.A	ENSGT00390000013249
Eupercaria	ANCESTRAL SPECIES	6	ENSGT00390000009456	ENSGT00420000029847	ENSGT00940000157021	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000010961.c	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00920000149457	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000167812	ENSGT00940000177178	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT01040000240400.c.a.b.a.b.a.a.a.a.a	ENSGT00940000155529.A
Eupecaria_A	ANCESTRAL SPECIES	7	ENSGT00390000009456	ENSGT00420000029847	ENSGT00940000157021	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000010961.c	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00920000149457	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000167812	ENSGT00940000177178	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT01040000240400.c.a.b.a.b.a.a.a.a.a	ENSGT00940000155529.A
Ballan wrasse	MODERN SPECIES	74	faap24 (ENSLBEG00000005670)	ENSLBEG00000005601	ANKRD27 (ENSLBEG00000005433)	ZDHHC7 (ENSLBEG00000005385)	TMED6 (ENSLBEG00000005338)	MLKL (ENSLBEG00000005305)	RFWD3 (ENSLBEG00000005275)	GLG1 (ENSLBEG00000005124)	ENSLBEG00000005041	urahb (ENSLBEG00000005026)	ENSLBEG00000004986	ENSLBEG00000004962	LRTM2 (ENSLBEG00000004951)	CACNA2D4 (ENSLBEG00000004912)	zgc:172145 (ENSLBEG00000004893)	myod1 (ENSLBEG00000004859) ##22	tnnt3a (ENSLBEG00000004820)	ENSLBEG00000004792	ENSLBEG00000004756	TNNI2 (ENSLBEG00000004734)	TNNI2 (ENSLBEG00000004709)	TNNI2 (ENSLBEG00000004685)	TNNI2 (ENSLBEG00000004663)	tnni2a.2 (ENSLBEG00000004628)	tnni2a.1 (ENSLBEG00000004589)	ENSLBEG00000004567	SYT8 (ENSLBEG00000004542)	dldh (ENSLBEG00000004489)	ENSLBEG00000004466	ENSLBEG00000004441	ENSLBEG00000004277
Eupecaria_B	ANCESTRAL SPECIES	7	ENSGT00390000009456	ENSGT00420000029847	ENSGT00940000157021	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000010961.c	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00920000149457	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000153901.a.b.b	ENSGT00940000167812	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT00940000155529.A	ENSGT00390000013249	ENSGT00940000159477
Perciformes	ANCESTRAL SPECIES	7	ENSGT00390000009456	ENSGT00420000029847	ENSGT00940000157021	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000010961.c	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00920000149457	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000153901.a.b.b	ENSGT00940000167812	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT00940000156469.a	ENSGT00550000075019	ENSGT00940000156131.a.a
Cottioidei	ANCESTRAL SPECIES	37				ENSGT00940000157021	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000010961.c	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000153901.a.b.b	ENSGT00940000167812	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT00940000156469.a	ENSGT00550000075019	ENSGT00940000156131.a.a	ENSGT00940000158339
Lumpfish	MODERN SPECIES	21	ENSCLMG00005007910	ENSCLMG00005007904	ZDHHC7 (ENSCLMG00005007899)	ENSCLMG00005007898	ENSCLMG00005007897	TMED6 (ENSCLMG00005007896)	MLKL (ENSCLMG00005007894)	RFWD3 (ENSCLMG00005007893)	GLG1 (ENSCLMG00005007781)	ENSCLMG00005007726	urahb (ENSCLMG00005007724)	ENSCLMG00005007712	LRTM2 (ENSCLMG00005007704)	ENSCLMG00005007700	CACNA2D4 (ENSCLMG00005007412)	myod1 (ENSCLMG00005007406) ##22	tnnt3a (ENSCLMG00005007403)	ENSCLMG00005007399	TNNI2 (ENSCLMG00005007397)	ENSCLMG00005007396	ENSCLMG00005007394	ENSCLMG00005007392	ENSCLMG00005007391	TNNI2 (ENSCLMG00005007390)	tnni2a.2 (ENSCLMG00005007389)	tnni2a.1 (ENSCLMG00005007388)	ENSCLMG00005007387	SYT8 (ENSCLMG00005007385)	dldh (ENSCLMG00005007366)	ENSCLMG00005007358	ENSCLMG00005007357
Stickleback	MODERN SPECIES	14	faap24 (ENSGACG00000008589)	ENSGACG00000008587	ENSGACG00000008577	ENSGACG00000008572	ZDHHC7 (ENSGACG00000008550)	ENSGACG00000008543	MLKL (ENSGACG00000008536)	RFWD3 (ENSGACG00000008531)	GLG1 (ENSGACG00000008520)	ENSGACG00000008512	urahb (ENSGACG00000008507)	ENSGACG00000008494	ENSGACG00000008489	CACNA2D4 (ENSGACG00000008453)	ENSGACG00000008450	myod1 (ENSGACG00000008444) ##22	tnnt3a (ENSGACG00000008384)	LSP1 (ENSGACG00000008376)	TNNI2 (ENSGACG00000008349)	TNNI2 (ENSGACG00000008333)	tnni2a.2 (ENSGACG00000008321)	tnni2a.1 (ENSGACG00000008315)	SYT8 (ENSGACG00000008302)	dldh (ENSGACG00000008240)	SLC7A10 (ENSGACG00000008186)	DUS2 (ENSGACG00000008159)	ENSGACG00000008153	ENSGACG00000008152	ENSGACG00000008150	immp2l (ENSGACG00000008130)	znf277 (ENSGACG00000008086)
Perciformes_a	ANCESTRAL SPECIES	33	ENSGT00390000009456	ENSGT00420000029847	ENSGT00940000157021	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000010961.c	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000155997.lb.b	ENSGT00940000157572.a.b	ENSGT00920000149457	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000153901.a.b.b	ENSGT00940000167812	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT00940000156469.a	ENSGT00550000075019	ENSGT00940000156131.a.a	ENSGT00940000158339
Pike perch	MODERN SPECIES	51	TMED6 (ENSSLUG00000015096)	ENSSLUG00000015091	MLKL (ENSSLUG00000015072)	RFWD3 (ENSSLUG00000015061)	GLG1 (ENSSLUG00000012798)	ENSSLUG00000012721	ENSSLUG00000012719	ENSSLUG00000012711	ENSSLUG00000012707	ENSSLUG00000012703	urahb (ENSSLUG00000012700)	ENSSLUG00000010284	LRTM2 (ENSSLUG00000010170)	CACNA2D4 (ENSSLUG00000010134)	zgc:172145 (ENSSLUG00000010117)	myod1 (ENSSLUG00000010105) ##22	tnnt3a (ENSSLUG00000010068)	ENSSLUG00000010057	ENSSLUG00000010049	ENSSLUG00000010045	tnni2a.4 (ENSSLUG00000009991)	tnni2a.2 (ENSSLUG00000009963)	ENSSLUG00000009952	SYT8 (ENSSLUG00000009945)	ENSSLUG00000009914	dldh (ENSSLUG00000008565)	ENSSLUG00000008480	ENSSLUG00000008472	ENSSLUG00000008461	ENSSLUG00000008451	ENSSLUG00000008445
Channel bull blenny	MODERN SPECIES	20	TMED6 (ENSCGOG00000005977)	ENSCGOG00000005979	faap24 (ENSCGOG00000005980)	ENSCGOG00000005983	MLKL (ENSCGOG00000005984)	RFWD3 (ENSCGOG00000005985)	GLG1 (ENSCGOG00000005997)	ENSCGOG00000006597	ENSCGOG00000006612	urahb (ENSCGOG00000006621)	ENSCGOG00000006641	CACNA2D4 (ENSCGOG00000007039)	LRTM2 (ENSCGOG00000007053)	ENSCGOG00000007080	zgc:172145 (ENSCGOG00000007083)	myod1 (ENSCGOG00000007087) ##22	tnnt3a (ENSCGOG00000007130)	zgc:172145 (ENSCGOG00000007280)	ENSCGOG00000007292	ENSCGOG00000007305	TNNI2 (ENSCGOG00000007312)	TNNI2 (ENSCGOG00000007317)	TNNI2 (ENSCGOG00000007324)	TNNI2 (ENSCGOG00000007334)	tnni2a.2 (ENSCGOG00000007341)	ENSCGOG00000007345	tnni2a.1 (ENSCGOG00000007358)	SLC7A10 (ENSCGOG00000007383)	ENSCGOG00000008073	dldh (ENSCGOG00000008107)	ENSCGOG00000009092
Eupecaria_C	ANCESTRAL SPECIES	6	ENSGT00390000009456	ENSGT00420000029847	ENSGT00940000157021	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000010961.c	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00920000149457	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000167812	ENSGT00940000177178	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT00940000155529.A	ENSGT00390000013249	ENSGT00940000159477	ENSGT00590000083094.a.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	4	ENSGT00390000009456	ENSGT00420000029847	ENSGT00940000157021	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000010961.c	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00920000149457	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000167812	ENSGT00940000177178	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT00940000160892	ENSGT00550000074844	ENSGT00940000155529.A	ENSGT00390000013249	ENSGT00940000159477	ENSGT00590000083094.a.b	ENSGT01030000234550.a.a.d.a.a	ENSGT00390000014326
European seabass	MODERN SPECIES	19	ENSDLAG00005030973	ENSDLAG00005029364	ENSDLAG00005032517	ENSDLAG00005014959	ENSDLAG00005014966	ENSDLAG00005012594	MLKL (ENSDLAG00005015000)	ENSDLAG00005015034	GLG1 (ENSDLAG00005015126)	ENSDLAG00005017462	ENSDLAG00005034798	ENSDLAG00005017692	ENSDLAG00005017494	ENSDLAG00005018579	zgc:172145 (ENSDLAG00005018584)	myod1 (ENSDLAG00005018589) ##22	tnnt3a (ENSDLAG00005018610)	ENSDLAG00005032620	ENSDLAG00005018639	ENSDLAG00005018661	TNNI2 (ENSDLAG00005018667)	TNNI2 (ENSDLAG00005029433)	tnni2a.2 (ENSDLAG00005032524)	tnni2a.1 (ENSDLAG00005018746)	ENSDLAG00005018756	ENSDLAG00005031818	ENSDLAG00005030743	ENSDLAG00005014942	ENSDLAG00005026858	ENSDLAG00005016966	ENSDLAG00005027593
Large yellow croaker	MODERN SPECIES	492	ENSLCRG00005014184	ANPEP (ENSLCRG00005014235)	anpepb.1 (ENSLCRG00005017182)	ENSLCRG00005019387	clp1 (ENSLCRG00005019389)	ENSLCRG00005019390	MLKL (ENSLCRG00005019391)	RFWD3 (ENSLCRG00005019395)	GLG1 (ENSLCRG00005019420)	ENSLCRG00005020187	urahb (ENSLCRG00005020189)	ENSLCRG00005020191	CACNA2D4 (ENSLCRG00005020194)	LRTM2 (ENSLCRG00005020201)	zgc:172145 (ENSLCRG00005020203)	myod1 (ENSLCRG00005020205) ##22	tnnt3a (ENSLCRG00005020211)	ENSLCRG00005020214	ENSLCRG00005020216	ENSLCRG00005020217	TNNI2 (ENSLCRG00005020221)	tnni2a.4 (ENSLCRG00005020224)	tnni2a.2 (ENSLCRG00005020228)	SYT8 (ENSLCRG00005020234)	dldh (ENSLCRG00005020243)	ENSLCRG00005020261	aass (ENSLCRG00005020281)	fezf1 (ENSLCRG00005020826)	CADPS2 (ENSLCRG00005020853)	slc13a1 (ENSLCRG00005022115)	IQUB (ENSLCRG00005022117)
Gilthead seabream	MODERN SPECIES	22	ENSSAUG00010004305	MLKL (ENSSAUG00010004319)	RFWD3 (ENSSAUG00010004383)	GLG1 (ENSSAUG00010004416)	ENSSAUG00010004558	ENSSAUG00010004562	ENSSAUG00010004565	ENSSAUG00010004567	ENSSAUG00010004572	ENSSAUG00010004574	urahb (ENSSAUG00010004577)	ENSSAUG00010004583	CACNA2D4 (ENSSAUG00010004611)	LRTM2 (ENSSAUG00010004887)	zgc:172145 (ENSSAUG00010004889)	myod1 (ENSSAUG00010004893) ##22	tnni2a.3 (ENSSAUG00010004903)	ENSSAUG00010004932	ENSSAUG00010004935	ENSSAUG00010004936	ENSSAUG00010004937	ENSSAUG00010004939	dldh (ENSSAUG00010004955)	ENSSAUG00010005868	ENSSAUG00010005869	ENSSAUG00010005871	ENSSAUG00010005872	ENSSAUG00010005873	ENSSAUG00010005875	ENSSAUG00010005876	ENSSAUG00010005877
Tetraodontidae	ANCESTRAL SPECIES	32	ENSGT00940000159477	ENSGT00390000013249	ENSGT00940000155529.A	ENSGT00390000009456	ENSGT00420000029847	ENSGT00940000157021	ENSGT00390000010961.d	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000155997.lb.b	ENSGT00940000157572.a.b	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000167812	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT00940000156469.a
Tetraodon	MODERN SPECIES	4															DUS2 (ENSTNIG00000005616)	myod1 (ENSTNIG00000002808) ##22	tnnt3a (ENSTNIG00000002809)	ENSTNIG00000000204	ENSTNIG00000002810	TNNI2 (ENSTNIG00000002811)	ENSTNIG00000001405	ENSTNIG00000002812	tnni2a.2 (ENSTNIG00000002813)	tnni2a.1 (ENSTNIG00000002814)	ENSTNIG00000002815	ENSTNIG00000004497	dldh (ENSTNIG00000004496)	SLC7A10 (ENSTNIG00000004495)	LRTM2 (ENSTNIG00000004493)	CACNA2D4 (ENSTNIG00000004494)	ENSTNIG00000004682
Fugu	MODERN SPECIES	21	ENSTRUG00000033347	CADPS2 (ENSTRUG00000016391)	fezf1 (ENSTRUG00000016410)	aass (ENSTRUG00000016419)	ENSTRUG00000030993	ENSTRUG00000029018	ENSTRUG00000021888	ANKRD27 (ENSTRUG00000016516)	TMED6 (ENSTRUG00000016539)	RFWD3 (ENSTRUG00000016541)	GLG1 (ENSTRUG00000016546)	ENSTRUG00000030677	urahb (ENSTRUG00000021342)	ENSTRUG00000016565	LRTM2 (ENSTRUG00000029534)	myod1 (ENSTRUG00000016609) ##22	tnnt3a (ENSTRUG00000016614)	ENSTRUG00000030147	ENSTRUG00000027670	ENSTRUG00000027588	ENSTRUG00000033030	ENSTRUG00000016632	tnni2a.2 (ENSTRUG00000016644)	tnni2a.1 (ENSTRUG00000022759)	ENSTRUG00000027114	SYT8 (ENSTRUG00000016657)	dldh (ENSTRUG00000016659)	ENSTRUG00000032988	SLC7A10 (ENSTRUG00000033356)	DUS2 (ENSTRUG00000022441)	ENSTRUG00000028185
Percomorphaceae_D	ANCESTRAL SPECIES	5	ENSGT00390000009456	ENSGT00420000029847	ENSGT00940000157021	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000010961.c	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00920000149457	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000167812	ENSGT00940000177178	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT00940000155529.A
Anabantaria	ANCESTRAL SPECIES	5	ENSGT00390000009456	ENSGT00420000029847	ENSGT00940000157021	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000010961.c	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00920000149457	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000169557	ENSGT00940000177178	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT01040000240400.c.a.b.a.b.b
Zig-zag eel	MODERN SPECIES	20	ENSMAMG00000024363	ENSMAMG00000026457	ENSMAMG00000022673	ENSMAMG00000022680	ENSMAMG00000022688	ENSMAMG00000022690	MLKL (ENSMAMG00000022692)	ENSMAMG00000022695	GLG1 (ENSMAMG00000022699)	ENSMAMG00000022709	ENSMAMG00000025621	urahb (ENSMAMG00000022710)	ENSMAMG00000022711	ENSMAMG00000022713	ENSMAMG00000022714	myod1 (ENSMAMG00000025845) ##22	tnnt3a (ENSMAMG00000022716)	ENSMAMG00000025176	ENSMAMG00000026203	TNNI2 (ENSMAMG00000024405)	TNNI2 (ENSMAMG00000028574)	TNNI2 (ENSMAMG00000022722)	TNNI2 (ENSMAMG00000025267)	TNNI2 (ENSMAMG00000028411)	tnni2a.2 (ENSMAMG00000022728)	tnni2a.1 (ENSMAMG00000022730)	ENSMAMG00000025933	SYT8 (ENSMAMG00000026620)	ENSMAMG00000022756	ENSMAMG00000022760	ENSMAMG00000024786
Anabantoidei	ANCESTRAL SPECIES	5	ENSGT00390000009456	ENSGT00420000029847	ENSGT00940000157021	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000010961.c	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000157572.a.b	ENSGT00940000155997.lb.b	ENSGT00920000149457	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000177178	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT00940000160892	ENSGT00550000074844	ENSGT01040000240400.c.a.b.a.b.b	ENSGT01040000240400.c.a.b.a.b.a.a.a.a.b.b	ENSGT00940000155529.A
Siamese fighting fish	MODERN SPECIES	17	dldh (ENSBSLG00000008044)	SYT8 (ENSBSLG00000008013)	TMED6 (ENSBSLG00000007994)	ENSBSLG00000007970	ENSBSLG00000007950	ENSBSLG00000007917	ENSBSLG00000007888	MLKL (ENSBSLG00000007872)	RFWD3 (ENSBSLG00000007791)	GLG1 (ENSBSLG00000006927)	ENSBSLG00000006449	urahb (ENSBSLG00000005954)	ENSBSLG00000005902	ENSBSLG00000005855	CACNA2D4 (ENSBSLG00000005093)	myod1 (ENSBSLG00000004886) ##22	tnnt3a (ENSBSLG00000004850)	ENSBSLG00000004819	ENSBSLG00000004780	ENSBSLG00000004764	ENSBSLG00000004751	TNNI2 (ENSBSLG00000004211)	ENSBSLG00000004198	TNNI2 (ENSBSLG00000004185)	tnni2a.2 (ENSBSLG00000004174)	tnni2a.1 (ENSBSLG00000004158)	ENSBSLG00000004149	ENSBSLG00000004129	ENSBSLG00000003923	ENSBSLG00000003875	ENSBSLG00000003773
Climbing perch	MODERN SPECIES	19	ENSATEG00000011562	ENSATEG00000011510	ENSATEG00000011469	ENSATEG00000011436	ENSATEG00000027365	MLKL (ENSATEG00000011422)	ENSATEG00000011399	GLG1 (ENSATEG00000011236)	ENSATEG00000011076	urahb (ENSATEG00000027908)	ENSATEG00000011010	ENSATEG00000027583	ENSATEG00000026163	ENSATEG00000010873	zgc:172145 (ENSATEG00000010861)	myod1 (ENSATEG00000010852) ##22	tnnt3a (ENSATEG00000010782)	ENSATEG00000010769	ENSATEG00000010747	TNNI2 (ENSATEG00000010717)	TNNI2 (ENSATEG00000010278)	TNNI2 (ENSATEG00000010240)	tnni2a.1 (ENSATEG00000010223)	SYT8 (ENSATEG00000010173)	ENSATEG00000010140	ENSATEG00000027848	ENSATEG00000027850	ENSATEG00000026154	ENSATEG00000010089	ENSATEG00000010027	ENSATEG00000027494
Carangaria	ANCESTRAL SPECIES	6	ENSGT00390000009456	ENSGT00420000029847	ENSGT00940000157021	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000010961.c	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000155997.lb.b	ENSGT00940000157572.a.b	ENSGT00920000149457	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000167812	ENSGT00940000177178	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT00940000155529.A	ENSGT00390000013249
Pleuronectoidei	ANCESTRAL SPECIES		ENSGT00950000183100.A	ENSGT00420000029847	ENSGT00940000157021	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000010961.c	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000155997.lb.b	ENSGT00940000157572.a.b	ENSGT00920000149457	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000177178	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.b	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT00940000160892	ENSGT00550000074844	ENSGT00940000155529.A	ENSGT00390000013249	ENSGT00940000159477	ENSGT00590000083094.a.b
Turbot	MODERN SPECIES	1	polr2c (ENSSMAG00000002827)	ENSSMAG00000002870	ENSSMAG00000002972	ENSSMAG00000003139	ENSSMAG00000003152	ENSSMAG00000003157	MLKL (ENSSMAG00000003174)	ENSSMAG00000003188	GLG1 (ENSSMAG00000003223)	ENSSMAG00000003532	urahb (ENSSMAG00000026967)	ENSSMAG00000003606	ENSSMAG00000003658	ENSSMAG00000003646	ENSSMAG00000022941	ENSSMAG00000003695 ##22	ENSSMAG00000003708	ENSSMAG00000035143	ENSSMAG00000003724	ENSSMAG00000003746	ENSSMAG00000003794	ENSSMAG00000003806	ENSSMAG00000003833	ENSSMAG00000034370	ENSSMAG00000003916	ENSSMAG00000034988	ENSSMAG00000003943	ENSSMAG00000004083	carmil2 (ENSSMAG00000004112)	ENSSMAG00000004154	ripor1 (ENSSMAG00000004172)
Tongue sole	MODERN SPECIES	16	ENSCSEG00000002352	CA12 (ENSCSEG00000002347)	MAN2C1 (ENSCSEG00000002320)	bmt2 (ENSCSEG00000002312)	TMEM168 (ENSCSEG00000002308)	ptdss2 (ENSCSEG00000002299)	ENSCSEG00000002298	ENSCSEG00000002294	ifitm5 (ENSCSEG00000002289)	cat (ENSCSEG00000002281)	syt12 (ENSCSEG00000002273)	PEAK1 (ENSCSEG00000002269)	LRTM2 (ENSCSEG00000002266)	CACNA2D4 (ENSCSEG00000002252)	zgc:172145 (ENSCSEG00000002238)	myod1 (ENSCSEG00000002233) ##22	tnnt3a (ENSCSEG00000002198)	ENSCSEG00000002191	ENSCSEG00000002189	ENSCSEG00000002176	ENSCSEG00000002173	TNNI2 (ENSCSEG00000002169)	TNNI2 (ENSCSEG00000002164)	TNNI2 (ENSCSEG00000002145)	tnni2a.2 (ENSCSEG00000002138)	tnni2a.1 (ENSCSEG00000002133)	ENSCSEG00000002121	septin15 (ENSCSEG00000002096)	ENSCSEG00000002089	smpd3 (ENSCSEG00000002076)	ENSCSEG00000002072
Carangaria_A	ANCESTRAL SPECIES		ENSGT00390000009456	ENSGT00420000029847	ENSGT00940000157021	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000010961.c	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000155997.lb.b	ENSGT00940000157572.a.b	ENSGT00920000149457	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000167812	ENSGT00940000177178	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.f	ENSGT01040000240400.c.a.b.a.b.a.a.a.a.b.b.b
Seriola	ANCESTRAL SPECIES	60	ENSGT00940000155529.A	ENSGT01040000240400.c.a.b.a.b.a.a.a.a.b.b.a.a	ENSGT01040000240400.c.a.b.a.b.a.a.a.a.b.b.a.b	ENSGT00940000157021	ENSGT00390000010961.d	ENSGT00390000010961.c	ENSGT00390000016453	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00940000155997.lb.b	ENSGT00940000157572.a.b	ENSGT00920000149457	ENSGT00950000182959.b.b.e.a ##22	ENSGT00940000158477.a.b	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234858	ENSGT00940000160892	ENSGT00550000074844	ENSGT00420000029847	ENSGT00390000009456	ENSGT00940000156469.a
Greater amberjack	MODERN SPECIES	160	ENSSDUG00000016458	ENSSDUG00000016467	ENSSDUG00000016481	ANKRD27 (ENSSDUG00000016497)	TMED6 (ENSSDUG00000016543)	TMED6 (ENSSDUG00000016560)	MLKL (ENSSDUG00000016569)	RFWD3 (ENSSDUG00000016584)	GLG1 (ENSSDUG00000016609)	ENSSDUG00000016686	urahb (ENSSDUG00000016691)	ENSSDUG00000016707	CACNA2D4 (ENSSDUG00000016797)	ENSSDUG00000016853	zgc:172145 (ENSSDUG00000016873)	myod1 (ENSSDUG00000016886) ##22	tnnt3a (ENSSDUG00000016913)	ENSSDUG00000016941	ENSSDUG00000016965	ENSSDUG00000016991	TNNI2 (ENSSDUG00000017036)	TNNI2 (ENSSDUG00000017051)	TNNI2 (ENSSDUG00000017072)	TNNI2 (ENSSDUG00000017087)	ENSSDUG00000017101	tnni2a.2 (ENSSDUG00000017108)	tnni2a.1 (ENSSDUG00000017118)	ENSSDUG00000017137	ENSSDUG00000017175	SYT8 (ENSSDUG00000017190)	dldh (ENSSDUG00000017239)
Yellowtail amberjack	MODERN SPECIES	3178												LRTM2 (ENSSLDG00000022406)	CACNA2D4 (ENSSLDG00000022368)	ENSSLDG00000022362	zgc:172145 (ENSSLDG00000022358)	myod1 (ENSSLDG00000022337) ##22	tnnt3a (ENSSLDG00000022320)	ENSSLDG00000022311	ENSSLDG00000022300	TNNI2 (ENSSLDG00000022288)	TNNI2 (ENSSLDG00000022278)	TNNI2 (ENSSLDG00000022273)	TNNI2 (ENSSLDG00000022266)
Barramundi perch	MODERN SPECIES	31													LRTM2 (ENSLCAG00010012207)	CACNA2D4 (ENSLCAG00010012209)	zgc:172145 (ENSLCAG00010012212)	myod1 (ENSLCAG00010012215) ##22	tnnt3a (ENSLCAG00010012221)	ENSLCAG00010012223	ENSLCAG00010012227	ENSLCAG00010012229	TNNI2 (ENSLCAG00010012232)	TNNI2 (ENSLCAG00010012249)	TNNI2 (ENSLCAG00010012275)	tnni2a.2 (ENSLCAG00010012290)	ENSLCAG00010012295	SYT8 (ENSLCAG00010012305)	dldh (ENSLCAG00010012352)	ENSLCAG00010012473	ENSLCAG00010012477	ENSLCAG00010012479	PTPRZ1 (ENSLCAG00010012605)
Pinecone sodierfish	MODERN SPECIES	20	GRAMD4 (ENSMMDG00005012587)	ENSMMDG00005012585	ENSMMDG00005012582	ENSMMDG00005012580	ENSMMDG00005012579	ENSMMDG00005012577	ENSMMDG00005012495	ENSMMDG00005012488	ENSMMDG00005012464	acot19 (ENSMMDG00005012454)	urahb (ENSMMDG00005012437)	ENSMMDG00005011190	LRTM2 (ENSMMDG00005011155)	CACNA2D4 (ENSMMDG00005010984)	zgc:172145 (ENSMMDG00005010974)	myod1 (ENSMMDG00005010952) ##22	tnnt3a (ENSMMDG00005010950)	ENSMMDG00005010949	TNNI2 (ENSMMDG00005010948)	ENSMMDG00005010947	ENSMMDG00005010946	ENSMMDG00005010945	ENSMMDG00005010944	tnni2a.2 (ENSMMDG00005010943)	tnni2a.1 (ENSMMDG00005010942)	SYT8 (ENSMMDG00005010940)	ENSMMDG00005010939	ENSMMDG00005010938	dldh (ENSMMDG00005010882)	PTPRZ1 (ENSMMDG00005010843)	aass (ENSMMDG00005008411)
Cod	MODERN SPECIES	22	ENSGMOG00000009524	ENSGMOG00000028403	ENSGMOG00000009519	ENSGMOG00000009508	ENSGMOG00000035361	ENSGMOG00000031788	ENSGMOG00000034008	ENSGMOG00000031025	actr6 (ENSGMOG00000003691)	ENSGMOG00000027867	si:ch211-59o9.10 (ENSGMOG00000037257)	ENSGMOG00000003566	ENSGMOG00000003907	ENSGMOG00000024112	ENSGMOG00000003800	ENSGMOG00000030879 ##22	tnnt3a (ENSGMOG00000016942)	ENSGMOG00000027097	ENSGMOG00000034763	ENSGMOG00000036471	tnni2a.1 (ENSGMOG00000026765)	ENSGMOG00000031300	SYT8 (ENSGMOG00000016874)	ENSGMOG00000016861	PTPRZ1 (ENSGMOG00000010806)	ENSGMOG00000036942	aass (ENSGMOG00000010875)	fezf1 (ENSGMOG00000023584)	CADPS2 (ENSGMOG00000035623)	slc13a1 (ENSGMOG00000009178)	IQUB (ENSGMOG00000019307)
Acanthomorphata	ANCESTRAL SPECIES	303														ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT01030000234990	ENSGT00940000177294	ENSGT00940000153901.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000011262.e.b
Euacanthomorphacea	ANCESTRAL SPECIES	161														ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT01030000234990	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000011262.e.b
Percomorphaceae	ANCESTRAL SPECIES	15	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT01030000234990	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813	ENSGT00390000011608	ENSGT00690000102225
Tiger tail seahorse	MODERN SPECIES	136	ndufs3 (ENSHCOG00000007117)	slc22a18 (ENSHCOG00000007148)	HACD3 (ENSHCOG00000000227)	SLC24A1 (ENSHCOG00000007190)	ENSHCOG00000007227	socs4 (ENSHCOG00000007249)	wdhd1 (ENSHCOG00000007286)	ENSHCOG00000007299	gch1 (ENSHCOG00000007311)	SAMD4A (ENSHCOG00000007338)	pacsin3 (ENSHCOG00000007361)	GLG1 (ENSHCOG00000007399)	tnni2b.1 (ENSHCOG00000007414)	aph1b (ENSHCOG00000007434)	OTOG (ENSHCOG00000007493)	myod1 (ENSHCOG00000007505) ##22	TNNT3 (ENSHCOG00000007514)	ENSHCOG00000007520	foxr1 (ENSHCOG00000007530)	atp6v0d1 (ENSHCOG00000000254)	ENSHCOG00000007547	ENSHCOG00000000257	ENSHCOG00000007798	ENSHCOG00000007856	ENSHCOG00000007893	c1qtnf4 (ENSHCOG00000007905)	ENSHCOG00000007911	ist1 (ENSHCOG00000007934)	mphosph10 (ENSHCOG00000007964)	mcee (ENSHCOG00000007970)	FTH1 (ENSHCOG00000007973)
Percomorphaceae_B	ANCESTRAL SPECIES	12	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT01030000234990	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b
Ovalentaria	ANCESTRAL SPECIES	17	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT01030000234990	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a	ENSGT00940000154856.A.a.c.b	ENSGT00940000163716.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b
Atherinomorphae	ANCESTRAL SPECIES	8	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813
Oryzias	ANCESTRAL SPECIES	79		ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000162993	ENSGT00390000002200.a.a
Oryzias_b	ANCESTRAL SPECIES	114										ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT00940000162993	ENSGT00390000002200.a.a
Indian medaka	MODERN SPECIES	418										SAMD4A (ENSOMEG00000019399)	ero1a (ENSOMEG00000019468)	pacsin3 (ENSOMEG00000019556)	GLG1 (ENSOMEG00000000522)	aph1b (ENSOMEG00000019680)	OTOG (ENSOMEG00000019766)	myod1 (ENSOMEG00000019794) ##22	TNNT3 (ENSOMEG00000019818)	ENSOMEG00000019829	ENSOMEG00000019845	atp6v0d1 (ENSOMEG00000019877)	ENSOMEG00000019889	ENSOMEG00000019915	ENSOMEG00000019927	ENSOMEG00000019935	ENSOMEG00000019949	ENSOMEG00000019961	ENSOMEG00000019965	ENSOMEG00000019974
Javanese ricefish	MODERN SPECIES	17	tipin (ENSOJAG00000005185)	lctla (ENSOJAG00000005207)	ENSOJAG00000005332	crybgx (ENSOJAG00000005363)	cars1 (ENSOJAG00000005475)	pex16 (ENSOJAG00000007521)	arfgap2 (ENSOJAG00000007620)	ENSOJAG00000007826	ENSOJAG00000000082	ENSOJAG00000000092	aph1b (ENSOJAG00000000118)	GLG1 (ENSOJAG00000000386)	pacsin3 (ENSOJAG00000000649)	ero1a (ENSOJAG00000000675)	SAMD4A (ENSOJAG00000000786)	myod1 (ENSOJAG00000000842) ##22	TNNT3 (ENSOJAG00000000845)	ENSOJAG00000000851	ENSOJAG00000000853	ENSOJAG00000000856	atp6v0d1 (ENSOJAG00000000868)	ENSOJAG00000001288	ENSOJAG00000001291	large2 (ENSOJAG00000001373)	ENSOJAG00000001687	ENSOJAG00000001702	ENSOJAG00000001711	ENSOJAG00000001732	ENSOJAG00000001763	drd4b (ENSOJAG00000001779)	ENSOJAG00000001790
Oryzias_a	ANCESTRAL SPECIES	148																ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000162993	ENSGT00390000002200.a.a
Japanese Medaka HdrR	MODERN SPECIES	17	ENSORLG00000026066	ENSORLG00000018346	ENSORLG00000023805	ENSORLG00000027380	ENSORLG00000026415	dis3l (ENSORLG00000018364)	tipin (ENSORLG00000018370)	lctla (ENSORLG00000030071)	crybgx (ENSORLG00000030061)	cars1 (ENSORLG00000022551)	pex16 (ENSORLG00000019603)	arfgap2 (ENSORLG00000019613)	ENSORLG00000019631	ENSORLG00000029986	ENSORLG00000000017	ENSORLG00000022079 ##22	ENSORLG00000023713	ENSORLG00000019668	ENSORLG00000029446	foxr1 (ENSORLG00000019674)	atp6v0d1 (ENSORLG00000026745)	ENSORLG00000019694	ENSORLG00000028201	ENSORLG00000024705	ENSORLG00000025073	ENSORLG00000022342	aph1b (ENSORLG00000018404)	ENSORLG00000023229	ENSORLG00000029833	pacsin3 (ENSORLG00000019702)	ero1a (ENSORLG00000023932)
Chinese medaka	MODERN SPECIES	4043																myod1 (ENSOSIG00000014093) ##22
Cyprinodontiformes	ANCESTRAL SPECIES	9	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000154856.A.a.c.b.f.a	ENSGT00940000163716.c.b.d.b.a	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813	ENSGT00390000011608
Cyprinodontoidei	ANCESTRAL SPECIES	6	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b.d.b.a	ENSGT00940000154856.A.a.c.b.f.a	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813	ENSGT00390000011608
Poeciliinae	ANCESTRAL SPECIES	13	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00390000011262.e.b	ENSGT00950000182973.b.a	ENSGT00390000007753.b	ENSGT00940000157933	ENSGT00390000013481.c.a	ENSGT00390000002030.l	ENSGT00940000166202	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a	ENSGT00940000154856.A.a.c.b.e	ENSGT00940000163716.c.b.c.b	ENSGT00940000154856.A.a.c.b.f.b	ENSGT00940000163716.c.b.c.a	ENSGT00940000163716.c.b.d.a	ENSGT00940000163716.c.b.d.b.b	ENSGT00940000163716.c.b.d.b.a.b	ENSGT00940000161832.a	ENSGT00390000017480
Poecilia	ANCESTRAL SPECIES	4	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00390000011262.e.b	ENSGT00950000182973.b.a	ENSGT00390000007753.b	ENSGT00940000157933	ENSGT00390000013481.c.a	ENSGT00390000002030.l	ENSGT00940000166202	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a	ENSGT00940000154856.A.a.c.b.e	ENSGT00940000163716.c.b.d.a	ENSGT00940000163716.c.b.d.b.b	ENSGT00940000154856.A.a.c.b.f.a	ENSGT00940000163716.c.b.d.b.a.a	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b
NAME_6	ANCESTRAL SPECIES	92	ENSGT01090000260059.a.b.b.a.a.a.a.a.a.b.a.g.a.a.b.a.b.b.a.a.b.b.b.a.a.c	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00390000011262.e.b	ENSGT00950000182973.b.a	ENSGT00390000007753.b	ENSGT00940000157933	ENSGT00390000013481.c.a	ENSGT00390000002030.l	ENSGT00940000166202	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a.b.b	ENSGT00940000163460.a.a.a.a.b.a	ENSGT00940000163460.a.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a	ENSGT00940000154856.A.a.c.b.e	ENSGT00940000163716.c.b.d.a	ENSGT00940000163716.c.b.d.b.b	ENSGT00940000154856.A.a.c.b.f.a	ENSGT00940000163716.c.b.d.b.a.a	ENSGT00940000161832.a
Amazon molly	MODERN SPECIES	350	slc22a18 (ENSPFOG00000006271)	HACD3 (ENSPFOG00000006432)	ENSPFOG00000006545	dennd4a (ENSPFOG00000006791)	glg1b (ENSPFOG00000007965)	pacsin3 (ENSPFOG00000008277)	ero1a (ENSPFOG00000008385)	SAMD4A (ENSPFOG00000008620)	gch1 (ENSPFOG00000008835)	wdhd1 (ENSPFOG00000008914)	ENSPFOG00000022454	socs4 (ENSPFOG00000009206)	tnni2b.1 (ENSPFOG00000009219)	aph1b (ENSPFOG00000009273)	OTOG (ENSPFOG00000009345)	myod1 (ENSPFOG00000009843) ##22	TNNT3 (ENSPFOG00000009845)	ENSPFOG00000022109	ENSPFOG00000009947	ENSPFOG00000009981	ENSPFOG00000010010	ENSPFOG00000010075	foxr1 (ENSPFOG00000010151)	atp6v0d1 (ENSPFOG00000010180)	ENSPFOG00000010292	ENSPFOG00000010378	ENSPFOG00000024331	ENSPFOG00000023067	ENSPFOG00000010486	ENSPFOG00000010507	ENSPFOG00000010511
Sailfin molly	MODERN SPECIES	3107																myod1 (ENSPLAG00000020836) ##22	TNNT3 (ENSPLAG00000020820)
Guppy	MODERN SPECIES	455	HACD3 (ENSPREG00000019209)	SLC24A1 (ENSPREG00000019149)	dennd4a (ENSPREG00000018994)	glg1b (ENSPREG00000018842)	pacsin3 (ENSPREG00000018797)	ero1a (ENSPREG00000018741)	ENSPREG00000018709	ENSPREG00000018696	SAMD4A (ENSPREG00000018648)	gch1 (ENSPREG00000018570)	wdhd1 (ENSPREG00000018533)	socs4 (ENSPREG00000018515)	tnni2b.1 (ENSPREG00000018498)	aph1b (ENSPREG00000018474)	ENSPREG00000018462	myod1 (ENSPREG00000018453) ##22	TNNT3 (ENSPREG00000018442)	ENSPREG00000018428	ENSPREG00000018424	ENSPREG00000018416	ENSPREG00000018404	foxr1 (ENSPREG00000018384)	atp6v0d1 (ENSPREG00000018365)	ENSPREG00000018343	ENSPREG00000018336	ENSPREG00000018325	ENSPREG00000018312	ENSPREG00000018298	ENSPREG00000018282	ENSPREG00000018257	ENSPREG00000018222
Platyfish	MODERN SPECIES	18	slc22a18 (ENSXMAG00000010324)	HACD3 (ENSXMAG00000010327)	SLC24A1 (ENSXMAG00000010371)	dennd4a (ENSXMAG00000010376)	glg1b (ENSXMAG00000010415)	pacsin3 (ENSXMAG00000022122)	ero1a (ENSXMAG00000029457)	ENSXMAG00000023464	SAMD4A (ENSXMAG00000009864)	gch1 (ENSXMAG00000009846)	wdhd1 (ENSXMAG00000009823)	socs4 (ENSXMAG00000020189)	tnni2b.1 (ENSXMAG00000009816)	aph1b (ENSXMAG00000009804)	OTOG (ENSXMAG00000009782)	myod1 (ENSXMAG00000009780) ##22	TNNT3 (ENSXMAG00000027991)	ENSXMAG00000028640	ENSXMAG00000029307	ENSXMAG00000026706	ENSXMAG00000028813	ENSXMAG00000023777	ENSXMAG00000025525	foxr1 (ENSXMAG00000029193)	atp6v0d1 (ENSXMAG00000018770)	ENSXMAG00000019966	ENSXMAG00000017982	ENSXMAG00000028886	ENSXMAG00000017989	ENSXMAG00000017991	ENSXMAG00000025084
NAME_4	ANCESTRAL SPECIES	66	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030.n	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a.a.a	ENSGT00940000163460.a.a.a.a.a.b	ENSGT00940000162993	ENSGT00390000002200.a.a
Mummichog	MODERN SPECIES	354				dennd4a (ENSFHEG00000009121)	socs4 (ENSFHEG00000009130)	ENSFHEG00000009177	ENSFHEG00000009185	gch1 (ENSFHEG00000009194)	SAMD4A (ENSFHEG00000009300)	ero1a (ENSFHEG00000009396)	pacsin3 (ENSFHEG00000009453)	glg1b (ENSFHEG00000009842)	tnni2b.1 (ENSFHEG00000009882)	aph1b (ENSFHEG00000009933)	OTOG (ENSFHEG00000010073)	myod1 (ENSFHEG00000010084) ##22	ENSFHEG00000000227	ENSFHEG00000010124	ENSFHEG00000010134	ENSFHEG00000010171
Sheepshead minnow	MODERN SPECIES	198	NR2E3 (ENSCVAG00000005210)	slc22a18 (ENSCVAG00000005226)	HACD3 (ENSCVAG00000005529)	SLC24A1 (ENSCVAG00000005559)	dennd4a (ENSCVAG00000005774)	socs4 (ENSCVAG00000005809)	wdhd1 (ENSCVAG00000006106)	gch1 (ENSCVAG00000006132)	SAMD4A (ENSCVAG00000006183)	ero1a (ENSCVAG00000006196)	pacsin3 (ENSCVAG00000006247)	glg1b (ENSCVAG00000006375)	tnni2b.1 (ENSCVAG00000006390)	aph1b (ENSCVAG00000006407)	OTOG (ENSCVAG00000000628)	myod1 (ENSCVAG00000006504) ##22	TNNT3 (ENSCVAG00000006519)	ENSCVAG00000006531	ENSCVAG00000006553	ENSCVAG00000006565	ENSCVAG00000006585	foxr1 (ENSCVAG00000006599)	atp6v0d1 (ENSCVAG00000006618)	ENSCVAG00000006642	ENSCVAG00000006645	ENSCVAG00000006653	ENSCVAG00000006659	ENSCVAG00000006667	ENSCVAG00000006673
Aplocheiloidei	ANCESTRAL SPECIES	39	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000154856.A.a.c.b.f.a	ENSGT00940000163716.c.b.d.b.a	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813	ENSGT00390000011608
Mangrove rivulus	MODERN SPECIES	94	slc22a18 (ENSKMAG00000020503)	HACD3 (ENSKMAG00000020519)	SAMD4A (ENSKMAG00000020543)	gch1 (ENSKMAG00000020574)	wdhd1 (ENSKMAG00000020604)	socs4 (ENSKMAG00000020674)	ENSKMAG00000020680	dennd4a (ENSKMAG00000020759)	SLC24A1 (ENSKMAG00000020920)	ero1a (ENSKMAG00000020950)	pacsin3 (ENSKMAG00000021024)	glg1b (ENSKMAG00000021075)	tnni2b.1 (ENSKMAG00000021151)	aph1b (ENSKMAG00000021168)	OTOG (ENSKMAG00000021189)	myod1 (ENSKMAG00000021238) ##22	TNNT3 (ENSKMAG00000021246)	ENSKMAG00000000140	ENSKMAG00000000158	ENSKMAG00000000224	foxr1 (ENSKMAG00000000233)	atp6v0d1 (ENSKMAG00000000274)
Turquoise killifish	MODERN SPECIES	1616	dennd4a (ENSNFUG00015004412)	SLC24A1 (ENSNFUG00015004331)	PTPLAD1 (ENSNFUG00015004247)	SLC22A18 (ENSNFUG00015004215)	NR2E3 (ENSNFUG00015004197)	STRA6 (ENSNFUG00015004168)	ENSNFUG00015004153	MPPED2 (ENSNFUG00015004145)	ZDHHC13 (ENSNFUG00015004092) ##9	CSRP3 (ENSNFUG00015004067)	E2F8 (ENSNFUG00015004061)	ENSNFUG00015004056	tnni2b.1 (ENSNFUG00015004041)	ENSNFUG00015004036	aph1b (ENSNFUG00015004030)	myod1 (ENSNFUG00015003991) ##22	TNNT3 (ENSNFUG00015003986)	ENSNFUG00015003982	ENSNFUG00015003978	ENSNFUG00015003951	ENSNFUG00015003937	ENSNFUG00015003935	ENSNFUG00015003933	rnaset2 (ENSNFUG00015003928)	MYOM2 (ENSNFUG00015003834)	ENSNFUG00015003786	CSMD1 (ENSNFUG00015004499)	ENSNFUG00015004374	ENSNFUG00015004348	ddx21 (ENSNFUG00015004182)	ENSNFUG00015004129
Ovalentaria_B	ANCESTRAL SPECIES	10	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT01030000234990	ENSGT00940000153901.a.b.a	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a	ENSGT00940000154856.A.a.c.b	ENSGT00940000163716.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b
Pomacentridae	ANCESTRAL SPECIES	15	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT01030000234990	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813	ENSGT00390000011608
Pomacentridae_A	ANCESTRAL SPECIES	67	ENSGT00390000010652.C	ENSGT00940000160456	ENSGT01030000234623.a.b.b	ENSGT00390000008502	ENSGT00690000102225	ENSGT00390000011608	ENSGT00940000156813	ENSGT00390000009453.fb.b	ENSGT00390000014065	ENSGT00390000017480	ENSGT00940000161832.a	ENSGT00940000161051.a.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT01030000234990	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a
Amphiprion	ANCESTRAL SPECIES	42	ENSGT00950000183076.a.b.b.a.a	ENSGT00390000010652.C	ENSGT00940000160456	ENSGT01030000234623.a.b.b	ENSGT00390000008502	ENSGT00690000102225	ENSGT00390000011608	ENSGT00940000156813	ENSGT00390000009453.fb.b	ENSGT00390000014065	ENSGT00390000017480	ENSGT00940000161832.a	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00980000199380.a.b	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00390000011262.e.b	ENSGT00950000182973.b.a	ENSGT00390000007753.b	ENSGT00940000157933	ENSGT00390000013481.c.a	ENSGT00390000002030	ENSGT00940000166202	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b.e
Clown anemonefish	DUPLICATION
Clown anemonefish	MODERN SPECIES	2000											ENSAOCG00000016088	ENSAOCG00000016140	tnni2b.1 (ENSAOCG00000016168)	aph1b (ENSAOCG00000016196)	OTOG (ENSAOCG00000016353)	myod1 (ENSAOCG00000016381) ##22	TNNT3 (ENSAOCG00000016439)	ENSAOCG00000001128
Clown anemonefish	MODERN SPECIES	2013																myod1 (ENSAOCG00000011653) ##22	MYO9B (ENSAOCG00000011575)
Orange clownfish	MODERN SPECIES		ENSAPEG00000000186	SERINC4 (ENSAPEG00000000185)	hypk (ENSAPEG00000000184)	mfap1 (ENSAPEG00000000183)	hddc3 (ENSAPEG00000000182)	vps33b (ENSAPEG00000000181)	prc1b (ENSAPEG00000000180)	ptpmt1 (ENSAPEG00000000179)	ndufs3 (ENSAPEG00000000178)	c1qtnf4 (ENSAPEG00000000177)	ENSAPEG00000000176	ENSAPEG00000000175	tnni2b.1 (ENSAPEG00000000174)	aph1b (ENSAPEG00000000173)	OTOG (ENSAPEG00000000171)	myod1 (ENSAPEG00000000170) ##22	TNNT3 (ENSAPEG00000000169)	ENSAPEG00000000168	ENSAPEG00000000167	ENSAPEG00000000166	foxr1 (ENSAPEG00000000165)	atp6v0d1 (ENSAPEG00000000164)	glg1b (ENSAPEG00000000163)	ENSAPEG00000000162	pacsin3 (ENSAPEG00000000161)	ero1a (ENSAPEG00000000160)	SAMD4A (ENSAPEG00000000159)	gch1 (ENSAPEG00000000158)	wdhd1 (ENSAPEG00000000157)	socs4 (ENSAPEG00000000156)	dennd4a (ENSAPEG00000000155)
Spiny chromis	MODERN SPECIES	203	ENSAPOG00000008561	SERINC4 (ENSAPOG00000008572)	hypk (ENSAPOG00000008593)	mfap1 (ENSAPOG00000008633)	hddc3 (ENSAPOG00000008637)	vps33b (ENSAPOG00000008758)	prc1b (ENSAPOG00000000921)	ptpmt1 (ENSAPOG00000009054)	ndufs3 (ENSAPOG00000009074)	c1qtnf4 (ENSAPOG00000009100)	ENSAPOG00000009120	ENSAPOG00000009168	tnni2b.1 (ENSAPOG00000009198)	aph1b (ENSAPOG00000009227)	OTOG (ENSAPOG00000009407)	myod1 (ENSAPOG00000000266) ##22	TNNT3 (ENSAPOG00000009460)	ENSAPOG00000009481	ENSAPOG00000009501	ENSAPOG00000009515	ENSAPOG00000009535
Bicolor damselfish	MODERN SPECIES	78															ENSSPAG00000017872	myod1 (ENSSPAG00000017839) ##22	TNNT3 (ENSSPAG00000017227)
Cichlidae	ANCESTRAL SPECIES	11	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT01030000234990	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000153901.a.b.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	13	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT01030000234990	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000153901.a.b.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	32	ENSGT00390000002200.a.a	ENSGT00940000162993	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00960000186692
Haplochromini	ANCESTRAL SPECIES	34	ENSGT00390000002200.a.a	ENSGT00940000162993	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030.o	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT01030000234990	ENSGT00940000177294	ENSGT00940000153901.a.b.a
Burton s mouthbrooder	MODERN SPECIES	684			HACD3 (ENSHBUG00000016439)	SLC24A1 (ENSHBUG00000016373)	dennd4a (ENSHBUG00000016303)	socs4 (ENSHBUG00000015873)	ENSHBUG00000015846	SAMD4A (ENSHBUG00000015778)	gch1 (ENSHBUG00000015632)	ero1a (ENSHBUG00000015614)	pacsin3 (ENSHBUG00000015595)	glg1b (ENSHBUG00000015542)	ENSHBUG00000015470	aph1b (ENSHBUG00000015397)	OTOG (ENSHBUG00000015356)	myod1 (ENSHBUG00000015165) ##22	TNNT3 (ENSHBUG00000015184)	ENSHBUG00000015145	ENSHBUG00000015130
Haplochromini_A	ANCESTRAL SPECIES	39	ENSGT00390000002200.a.a	ENSGT00940000162993	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030.o	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000177294	ENSGT00490000044642.a.a.a.a.a.b.a.a.b.h
Haplochromini_B	ANCESTRAL SPECIES	56	ENSGT00390000002200.a.a	ENSGT00940000162993	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202.c	ENSGT00390000002030.o	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000177294	ENSGT00490000044642.a.a.a.a.a.b.a.a.b.h
Zebra mbuna	MODERN SPECIES	1091	atp6v0d1 (ENSMZEG00005015650)	foxr1 (ENSMZEG00005015635)	HACD3 (ENSMZEG00005015600)	SLC24A1 (ENSMZEG00005015586)	dennd4a (ENSMZEG00005015311)	socs4 (ENSMZEG00005015254)	wdhd1 (ENSMZEG00005015228)	gch1 (ENSMZEG00005015209)	SAMD4A (ENSMZEG00005015188)	ero1a (ENSMZEG00005015175)	pacsin3 (ENSMZEG00005015162)	glg1b (ENSMZEG00005015115)	TNNI2 (ENSMZEG00005015093)	aph1b (ENSMZEG00005015081)	OTOG (ENSMZEG00005015041)	myod1 (ENSMZEG00005015006) ##22	TNNT3 (ENSMZEG00005014820)	ENSMZEG00005014810	ENSMZEG00005014803	ENSMZEG00005014794	ENSMZEG00005014786	ENSMZEG00005014779	ENSMZEG00005014767	slc22a18 (ENSMZEG00005014753)	NR2E3 (ENSMZEG00005014737)	ENSMZEG00005014718	ENSMZEG00005014709	mpped2a (ENSMZEG00005014683)	zdhhc13 (ENSMZEG00005014665) ##9	csrp3 (ENSMZEG00005014652)	e2f8 (ENSMZEG00005014622)
Eastern happy	MODERN SPECIES		ENSACLG00000008777	HACD3 (ENSACLG00000008783)	SLC24A1 (ENSACLG00000008823)	ENSACLG00000008842	dennd4a (ENSACLG00000008854)	socs4 (ENSACLG00000009024)	wdhd1 (ENSACLG00000009036)	gch1 (ENSACLG00000009069)	SAMD4A (ENSACLG00000009089)	ero1a (ENSACLG00000009207)	pacsin3 (ENSACLG00000009240)	glg1b (ENSACLG00000009342)	tnni2b.1 (ENSACLG00000009427)	aph1b (ENSACLG00000009435)	OTOG (ENSACLG00000009449)	myod1 (ENSACLG00000009487) ##22	TNNT3 (ENSACLG00000009498)	ENSACLG00000009574	ENSACLG00000009580	ENSACLG00000009585	ENSACLG00000010176	celf1 (ENSACLG00000010181)	mtfmt (ENSACLG00000010234)	uqcrfs1 (ENSACLG00000010241)	rasl12 (ENSACLG00000010244)	ENSACLG00000010254	UBAP1L (ENSACLG00000010255)	KBTBD13 (ENSACLG00000010261)	pdcd7 (ENSACLG00000010263)	spg21 (ENSACLG00000010436)	ENSACLG00000010474
P. nyererei	MODERN SPECIES	604				SLC24A1 (ENSPNYG00000018952)	dennd4a (ENSPNYG00000018998)	socs4 (ENSPNYG00000019064)	wdhd1 (ENSPNYG00000019115)	gch1 (ENSPNYG00000019405)	SAMD4A (ENSPNYG00000019428)	ero1a (ENSPNYG00000019483)	pacsin3 (ENSPNYG00000019526)	glg1b (ENSPNYG00000019577)	TNNI2 (ENSPNYG00000019672)	aph1b (ENSPNYG00000019699)	OTOG (ENSPNYG00000019728)	myod1 (ENSPNYG00000019848) ##22	TNNT3 (ENSPNYG00000019870)	ENSPNYG00000020016	ENSPNYG00000020046	ENSPNYG00000020055	ENSPNYG00000020071
Lyretail cichlid	MODERN SPECIES	412	atp6v0d1 (ENSNBRG00000010437)	ENSNBRG00000010426	HACD3 (ENSNBRG00000010400)	SLC24A1 (ENSNBRG00000010383)	ENSNBRG00000010370	socs4 (ENSNBRG00000010334)	wdhd1 (ENSNBRG00000010071)	gch1 (ENSNBRG00000010039)	SAMD4A (ENSNBRG00000009997)	ero1a (ENSNBRG00000009955)	pacsin3 (ENSNBRG00000009877)	glg1b (ENSNBRG00000009842)	ENSNBRG00000009822	aph1b (ENSNBRG00000009791)	OTOG (ENSNBRG00000009698)	myod1 (ENSNBRG00000009675) ##22	TNNT3 (ENSNBRG00000009613)	ENSNBRG00000009599	ENSNBRG00000009589
Nile tilapia	MODERN SPECIES		ENSONIG00000036270	LRRC4C (ENSONIG00000020451)	apip (ENSONIG00000005908)	hsd17b12b (ENSONIG00000042636)	slc1a2a (ENSONIG00000005912)	ENSONIG00000005915	chst1 (ENSONIG00000020452)	ENSONIG00000005920	ENSONIG00000034018	MAPK8IP1 (ENSONIG00000036840)	ENSONIG00000042626	A3GALT2 (ENSONIG00000027795)	ENSONIG00000041355	celf1 (ENSONIG00000008300)	OTOG (ENSONIG00000007889)	myod2 (ENSONIG00000007897) ##22	TNNT3 (ENSONIG00000007898)	ENSONIG00000032798	ENSONIG00000030513	ENSONIG00000041528	ENSONIG00000029025	ENSONIG00000040953	ENSONIG00000038942	fgf4 (ENSONIG00000018093)	fgf3 (ENSONIG00000018091)	lto1 (ENSONIG00000028091)	fah (ENSONIG00000037906)	ENSONIG00000042755	ENSONIG00000034177	ENSONIG00000030455	arnt2 (ENSONIG00000001978)
Midas cichlid	MODERN SPECIES	557														aph1b (ENSACIG00000017891)	OTOG (ENSACIG00000017912)	myod1 (ENSACIG00000017993) ##22	TNNT3 (ENSACIG00000018008)	ENSACIG00000018070
Percomorphaceae_C	ANCESTRAL SPECIES	11	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161051.a.a.b.a.c	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b
Eupercaria	ANCESTRAL SPECIES	14	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161051.a.a.b.a.c	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b
Tetraodontidae	ANCESTRAL SPECIES	4	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000154856.A.a.c.b	ENSGT00940000161051.a.a.b.a.c	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813	ENSGT00390000011608	ENSGT00690000102225	ENSGT00390000008502
Tetraodon	MODERN SPECIES	20	ENSTNIG00000005151	NR2E3 (ENSTNIG00000005150)	HACD3 (ENSTNIG00000001644)	SLC24A1 (ENSTNIG00000018806)	dennd4a (ENSTNIG00000018805)	socs4 (ENSTNIG00000002432)	wdhd1 (ENSTNIG00000018803)	gch1 (ENSTNIG00000018802)	SAMD4A (ENSTNIG00000018801)	ero1a (ENSTNIG00000018800)	pacsin3 (ENSTNIG00000018799)	glg1b (ENSTNIG00000018797)	tnni2b.1 (ENSTNIG00000018796)	aph1b (ENSTNIG00000018795)	OTOG (ENSTNIG00000018794)	myod1 (ENSTNIG00000018793) ##22	TNNT3 (ENSTNIG00000018792)	ENSTNIG00000018791	foxr1 (ENSTNIG00000018790)	atp6v0d1 (ENSTNIG00000018789)	ENSTNIG00000018788	ENSTNIG00000018787	ENSTNIG00000018786	c1qtnf4 (ENSTNIG00000018785)	ndufs3 (ENSTNIG00000018784)	prc1b (ENSTNIG00000018783)	ENSTNIG00000018782	hddc3 (ENSTNIG00000018781)	mfap1 (ENSTNIG00000018780)	hypk (ENSTNIG00000018779)	SERINC4 (ENSTNIG00000018778)
Fugu	MODERN SPECIES	4	ENSTRUG00000015637	NR2E3 (ENSTRUG00000015582)	slc22a18 (ENSTRUG00000015561)	HACD3 (ENSTRUG00000015510)	SLC24A1 (ENSTRUG00000015482)	dennd4a (ENSTRUG00000015436)	socs4 (ENSTRUG00000015433)	wdhd1 (ENSTRUG00000015390)	gch1 (ENSTRUG00000015367)	SAMD4A (ENSTRUG00000015288)	ero1a (ENSTRUG00000015220)	pacsin3 (ENSTRUG00000015184)	glg1b (ENSTRUG00000015083)	tnni2b.1 (ENSTRUG00000015041)	aph1b (ENSTRUG00000014985)	myod1 (ENSTRUG00000014891) ##22	TNNT3 (ENSTRUG00000014861)	ENSTRUG00000021513	ENSTRUG00000031897	foxr1 (ENSTRUG00000014847)	ENSTRUG00000014811	ENSTRUG00000014775	fgc6ast1 (ENSTRUG00000014710)	c1qtnf4 (ENSTRUG00000030667)	ndufs3 (ENSTRUG00000014669)	ptpmt1 (ENSTRUG00000021942)	prc1b (ENSTRUG00000014588)	vps33b (ENSTRUG00000014506)	hddc3 (ENSTRUG00000021476)	mfap1 (ENSTRUG00000014459)	hypk (ENSTRUG00000014436)
Eupecaria_A	ANCESTRAL SPECIES	15	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813
Ballan wrasse	MODERN SPECIES	142	HACD3 (ENSLBEG00000024570)	SLC24A1 (ENSLBEG00000024638)	dennd4a (ENSLBEG00000024700)	socs4 (ENSLBEG00000024771)	wdhd1 (ENSLBEG00000024847)	gch1 (ENSLBEG00000024950)	SAMD4A (ENSLBEG00000025062)	ero1a (ENSLBEG00000025153)	pacsin3 (ENSLBEG00000025230)	glg1b (ENSLBEG00000025302)	tnni2b.1 (ENSLBEG00000025369)	aph1b (ENSLBEG00000025401)	ENSLBEG00000025428	ENSLBEG00000025444	ENSLBEG00000025461	myod1 (ENSLBEG00000025479) ##22	TNNT3 (ENSLBEG00000025517)	ENSLBEG00000025581	ENSLBEG00000025615	foxr1 (ENSLBEG00000025631)	atp6v0d1 (ENSLBEG00000025653)	ENSLBEG00000025684	ENSLBEG00000025703	ENSLBEG00000025718	c1qtnf4 (ENSLBEG00000025735)	ndufs3 (ENSLBEG00000025754)	ptpmt1 (ENSLBEG00000025784)	prc1b (ENSLBEG00000025812)	vps33b (ENSLBEG00000025870)	hddc3 (ENSLBEG00000025928)	hypk (ENSLBEG00000025967)
Eupecaria_B	ANCESTRAL SPECIES	15	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813
Perciformes	ANCESTRAL SPECIES	15	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813	ENSGT00390000011608
Perciformes_a	ANCESTRAL SPECIES	13	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813	ENSGT00390000011608	ENSGT00690000102225
Channel bull blenny	MODERN SPECIES	17	NR2E3 (ENSCGOG00000001111)	slc22a18 (ENSCGOG00000001108)	HACD3 (ENSCGOG00000001094)	SLC24A1 (ENSCGOG00000001085)	dennd4a (ENSCGOG00000000880)	socs4 (ENSCGOG00000000851)	wdhd1 (ENSCGOG00000000697)	gch1 (ENSCGOG00000000646)	SAMD4A (ENSCGOG00000000470)	ero1a (ENSCGOG00000000411)	pacsin3 (ENSCGOG00000000368)	glg1b (ENSCGOG00000000287)	tnni2b.1 (ENSCGOG00000000244)	aph1b (ENSCGOG00000000232)	OTOG (ENSCGOG00000000174)	myod1 (ENSCGOG00000000126) ##22	TNNT3 (ENSCGOG00000000102)	ENSCGOG00000000089	ENSCGOG00000000084	ENSCGOG00000000074	ENSCGOG00000019539	foxr1 (ENSCGOG00000019537)	atp6v0d1 (ENSCGOG00000019523)	ENSCGOG00000019501	c1qtnf4 (ENSCGOG00000019498)	ndufs3 (ENSCGOG00000019478)	ptpmt1 (ENSCGOG00000019475)	prc1b (ENSCGOG00000019399)	vps33b (ENSCGOG00000018984)	hddc3 (ENSCGOG00000018977)	mfap1 (ENSCGOG00000018963)
Pike perch	MODERN SPECIES	42	NR2E3 (ENSSLUG00000014245)	slc22a18 (ENSSLUG00000014266)	HACD3 (ENSSLUG00000014295)	SLC24A1 (ENSSLUG00000014312)	dennd4a (ENSSLUG00000014340)	socs4 (ENSSLUG00000014357)	wdhd1 (ENSSLUG00000014371)	gch1 (ENSSLUG00000014411)	SAMD4A (ENSSLUG00000014423)	ero1a (ENSSLUG00000014452)	pacsin3 (ENSSLUG00000014868)	glg1b (ENSSLUG00000014927)	tnni2b.1 (ENSSLUG00000015288)	aph1b (ENSSLUG00000015292)	OTOG (ENSSLUG00000015304)	myod1 (ENSSLUG00000015360) ##22	TNNT3 (ENSSLUG00000015377)	ENSSLUG00000015385	foxr1 (ENSSLUG00000015392)	atp6v0d1 (ENSSLUG00000015419)	ENSSLUG00000015470	ENSSLUG00000015477	ENSSLUG00000015482	c1qtnf4 (ENSSLUG00000015485)	ndufs3 (ENSSLUG00000015488)	ptpmt1 (ENSSLUG00000015495)	prc1b (ENSSLUG00000015534)	vps33b (ENSSLUG00000015798)	hddc3 (ENSSLUG00000015881)	mfap1 (ENSSLUG00000015886)	hypk (ENSSLUG00000015896)
Cottioidei	ANCESTRAL SPECIES	13					ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813	ENSGT00390000011608	ENSGT00690000102225	ENSGT00390000008502	ENSGT01030000234623.a.b.b
Lumpfish	MODERN SPECIES	18	ENSCLMG00005003411	ENSCLMG00005003410	ENSCLMG00005003408	ENSCLMG00005003406	ENSCLMG00005003404	socs4 (ENSCLMG00005003403)	wdhd1 (ENSCLMG00005003392)	gch1 (ENSCLMG00005003387)	SAMD4A (ENSCLMG00005003385)	ero1a (ENSCLMG00005003328)	pacsin3 (ENSCLMG00005003323)	glg1b (ENSCLMG00005003173)	tnni2b.1 (ENSCLMG00005003095)	aph1b (ENSCLMG00005003089)	OTOG (ENSCLMG00005003067)	MYOD1 (ENSCLMG00005003056) ##22	TNNT3 (ENSCLMG00005003049)	ENSCLMG00005003043	ENSCLMG00005003037	ENSCLMG00005003032	foxr1 (ENSCLMG00005003021)	atp6v0d1 (ENSCLMG00005002959)	ENSCLMG00005002921	ENSCLMG00005002881	c1qtnf4 (ENSCLMG00005002868)	ENSCLMG00005002846	ENSCLMG00005002820	ENSCLMG00005012057	ENSCLMG00005012056	ENSCLMG00005012055	ENSCLMG00005012052
Stickleback	MODERN SPECIES	1	ENSGACG00000017297	ENSGACG00000017302	dapk2a (ENSGACG00000017307)	ENSGACG00000017310	ENSGACG00000017313	dis3l (ENSGACG00000017315)	socs4 (ENSGACG00000017319)	wdhd1 (ENSGACG00000017321)	gch1 (ENSGACG00000017325)	ENSGACG00000017331	pacsin3 (ENSGACG00000017333)	GLG1 (ENSGACG00000017337)	tnni2b.1 (ENSGACG00000017338)	aph1b (ENSGACG00000017339)	OTOG (ENSGACG00000017343)	myod1 (ENSGACG00000017350) ##22	TNNT3 (ENSGACG00000017352)	ENSGACG00000017354	foxr1 (ENSGACG00000017356)	atp6v0d1 (ENSGACG00000017358)	ENSGACG00000017378	c1qtnf4 (ENSGACG00000017381)	ndufs3 (ENSGACG00000017384)	ptpmt1 (ENSGACG00000017391)	prc1b (ENSGACG00000017394)	vps33b (ENSGACG00000017403)	hddc3 (ENSGACG00000017413)	mfap1 (ENSGACG00000017419)	hypk (ENSGACG00000017423)	SERINC4 (ENSGACG00000017426)	ENSGACG00000017432
Eupecaria_C	ANCESTRAL SPECIES	11	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a.c	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	7	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813	ENSGT00390000011608
European seabass	MODERN SPECIES	18	ENSDLAG00005017617	ENSDLAG00005030198	HACD3 (ENSDLAG00005032938)	SLC24A1 (ENSDLAG00005029857)	DENND4A (ENSDLAG00005017811)	socs4 (ENSDLAG00005031594)	wdhd1 (ENSDLAG00005018377)	gch1 (ENSDLAG00005031132)	SAMD4A (ENSDLAG00005018542)	ero1a (ENSDLAG00005018493)	ENSDLAG00005018657	ENSDLAG00005018712	ENSDLAG00005019543	ENSDLAG00005026766	ENSDLAG00005019564	ENSDLAG00005034786 ##22	ENSDLAG00005019645	ENSDLAG00005019721	ENSDLAG00005032447	ENSDLAG00005028426	ENSDLAG00005019755	ENSDLAG00005019779	ENSDLAG00005032776	ENSDLAG00005026741	ENSDLAG00005005513	ENSDLAG00005019814	ENSDLAG00005019820	ENSDLAG00005020430	hddc3 (ENSDLAG00005020498)	vps33b (ENSDLAG00005019854)	mfap1 (ENSDLAG00005020503)
Large yellow croaker	MODERN SPECIES	10																myod1 (ENSLCRG00005015182) ##22	GABARAPL2 (ENSLCRG00005015197)
Gilthead seabream	MODERN SPECIES	18	NR2E3 (ENSSAUG00010011796)	slc22a18 (ENSSAUG00010011801)	HACD3 (ENSSAUG00010011805)	SLC24A1 (ENSSAUG00010011812)	dennd4a (ENSSAUG00010011836)	GFUS (ENSSAUG00010012034)	socs4 (ENSSAUG00010012526)	wdhd1 (ENSSAUG00010012535)	gch1 (ENSSAUG00010012542)	SAMD4A (ENSSAUG00010012545)	ero1a (ENSSAUG00010012573)	pacsin3 (ENSSAUG00010012825)	glg1b (ENSSAUG00010012845)	TNNI2 (ENSSAUG00010012899)	aph1b (ENSSAUG00010012901)	myod1 (ENSSAUG00010012905) ##22	TNNT3 (ENSSAUG00010012907)	ENSSAUG00010012908	ENSSAUG00010012909	ENSSAUG00010012913	ENSSAUG00010012915	ppef1 (ENSSAUG00010012918)	ENSSAUG00010012923	ENSSAUG00010012925	cdkl5 (ENSSAUG00010012926)	SCML2 (ENSSAUG00010012942)	NHS (ENSSAUG00010012957)	ace2 (ENSSAUG00010013032)	ENSSAUG00010017573	zgc:113276 (ENSSAUG00010017574)	pir (ENSSAUG00010017576)
Percomorphaceae_D	ANCESTRAL SPECIES	11	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813	ENSGT00390000011608
Anabantaria	ANCESTRAL SPECIES	43														ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a.c	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813
Anabantoidei	ANCESTRAL SPECIES	8	ENSGT00940000157462.C.c.a	ENSGT00940000157661.e.b	ENSGT00940000161238.l	ENSGT00940000165402	ENSGT00940000158758	ENSGT00940000154390.E.d	ENSGT00950000182839.B.b.a ##33	ENSGT00940000165480.a	ENSGT00730000111007.a.b	ENSGT00940000153561.b.a.a.b	ENSGT00940000158565	ENSGT01050000244900.a.a.b.eb ##25	ENSGT00940000163723.A.f.a	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a.c	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813
Climbing perch	MODERN SPECIES	16	ENSATEG00000015866	ENSATEG00000029986	ENSATEG00000015977	ENSATEG00000015989	ENSATEG00000015995	ENSATEG00000016000 ##33	ENSATEG00000016007	ENSATEG00000016025	SHANK2 (ENSATEG00000016145)	ENSATEG00000016162	PPFIA1 (ENSATEG00000016231) ##25	ENSATEG00000016528	ENSATEG00000026393	ENSATEG00000016694	ENSATEG00000016726	ENSATEG00000016866 ##22	ENSATEG00000016880	ENSATEG00000016938	ENSATEG00000016974	ENSATEG00000017030	ENSATEG00000017062	ENSATEG00000017251	ENSATEG00000017101	ENSATEG00000017115	ENSATEG00000017151	ENSATEG00000017171	ENSATEG00000017190	c1qtnf4 (ENSATEG00000017205)	ENSATEG00000017226	ptpmt1 (ENSATEG00000017238)	vps33b (ENSATEG00000017282)
Siamese fighting fish	MODERN SPECIES	14	gpn1 (ENSBSLG00000003856)	BRSK2 (ENSBSLG00000004153)	ABTB2 (ENSBSLG00000004282)	ENSBSLG00000004346	ENSBSLG00000004356	large2 (ENSBSLG00000004866)	ENSBSLG00000005590	ENSBSLG00000005808 ##33	ENSBSLG00000005820	ENSBSLG00000005891	SHANK2 (ENSBSLG00000006606)	CTTN (ENSBSLG00000007102)	ppfia1 (ENSBSLG00000008183) ##25	ENSBSLG00000014549	aph1b (ENSBSLG00000014773)	myod1 (ENSBSLG00000014781) ##22	TNNT3 (ENSBSLG00000014791)	ENSBSLG00000014864	ENSBSLG00000014877	ENSBSLG00000014883	ENSBSLG00000014886	foxr1 (ENSBSLG00000014895)	atp6v0d1 (ENSBSLG00000014931)	ENSBSLG00000015001	ENSBSLG00000015182	c1qtnf4 (ENSBSLG00000015265)	ndufs3 (ENSBSLG00000015288)	ptpmt1 (ENSBSLG00000015450)	prc1b (ENSBSLG00000015476)	vps33b (ENSBSLG00000015623)	hddc3 (ENSBSLG00000015688)
Carangaria	ANCESTRAL SPECIES	11	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT01030000234990	ENSGT00960000186692	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813	ENSGT00390000011608
Carangaria_A	ANCESTRAL SPECIES	19	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813	ENSGT00390000011608	ENSGT00690000102225
Seriola	ANCESTRAL SPECIES	30	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT00960000186692	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813	ENSGT00390000011608	ENSGT00690000102225
Yellowtail amberjack	MODERN SPECIES	2714	myef2 (ENSSLDG00000021862)	ENSSLDG00000021852	CTXN2 (ENSSLDG00000021847)	SLC12A1 (ENSSLDG00000021800)	dennd4a (ENSSLDG00000021745)	socs4 (ENSSLDG00000021736)	wdhd1 (ENSSLDG00000021689)	gch1 (ENSSLDG00000021679)	SAMD4A (ENSSLDG00000021630)	ero1a (ENSSLDG00000021600)	pacsin3 (ENSSLDG00000021581)	glg1b (ENSSLDG00000021532)	TNNI2 (ENSSLDG00000021512)	aph1b (ENSSLDG00000021492)	OTOG (ENSSLDG00000021395)	myod1 (ENSSLDG00000021376) ##22	TNNT3 (ENSSLDG00000021245)
Greater amberjack	MODERN SPECIES	3	slc22a18 (ENSSDUG00000016604)	HACD3 (ENSSDUG00000016623)	SLC24A1 (ENSSDUG00000016668)	dennd4a (ENSSDUG00000016708)	socs4 (ENSSDUG00000016907)	wdhd1 (ENSSDUG00000016996)	gch1 (ENSSDUG00000017494)	SAMD4A (ENSSDUG00000017510)	ENSSDUG00000017549	ero1a (ENSSDUG00000017566)	pacsin3 (ENSSDUG00000017630)	glg1b (ENSSDUG00000017681)	ENSSDUG00000017775	aph1b (ENSSDUG00000017793)	OTOG (ENSSDUG00000017868)	myod1 (ENSSDUG00000018276) ##22	TNNT3 (ENSSDUG00000018283)	ENSSDUG00000018305	ENSSDUG00000018321	ENSSDUG00000018331	foxr1 (ENSSDUG00000018344)	atp6v0d1 (ENSSDUG00000018360)	ENSSDUG00000018375	ENSSDUG00000018386	ENSSDUG00000018406	ENSSDUG00000018427	ENSSDUG00000018441	c1qtnf4 (ENSSDUG00000018457)	ndufs3 (ENSSDUG00000018492)	ptpmt1 (ENSSDUG00000018606)	prc1b (ENSSDUG00000018615)
Barramundi perch	MODERN SPECIES	96	NR2E3 (ENSLCAG00010017688)	slc22a18 (ENSLCAG00010017678)	HACD3 (ENSLCAG00010017676)	SLC24A1 (ENSLCAG00010017673)	dennd4a (ENSLCAG00010017670)	socs4 (ENSLCAG00010017668)	wdhd1 (ENSLCAG00010017654)	gch1 (ENSLCAG00010017650)	SAMD4A (ENSLCAG00010017642)	ero1a (ENSLCAG00010017638)	pacsin3 (ENSLCAG00010017636)	glg1b (ENSLCAG00010017596)	tnni2b.1 (ENSLCAG00010017526)	aph1b (ENSLCAG00010017523)	OTOG (ENSLCAG00010017486)	myod1 (ENSLCAG00010017465) ##22	TNNT3 (ENSLCAG00010017455)	ENSLCAG00010017452	ENSLCAG00010017447
Pleuronectoidei	ANCESTRAL SPECIES	39	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b ##22	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT01030000234990	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813	ENSGT00390000011608	ENSGT00690000102225	ENSGT00390000008502	ENSGT01030000234623.a.b.b
Turbot	MODERN SPECIES	17	ENSSMAG00000007972	ENSSMAG00000007954	ENSSMAG00000007929	HACD3 (ENSSMAG00000007882)	SLC24A1 (ENSSMAG00000007857)	DENND4A (ENSSMAG00000007433)	wdhd1 (ENSSMAG00000007346)	ENSSMAG00000034634	SAMD4A (ENSSMAG00000007254)	ero1a (ENSSMAG00000007207)	ENSSMAG00000007168	ENSSMAG00000006788	ENSSMAG00000006609	ENSSMAG00000006568	ENSSMAG00000027873	ENSSMAG00000006529 ##22	ENSSMAG00000006392	ENSSMAG00000006376	ENSSMAG00000006344	ENSSMAG00000006320	ENSSMAG00000027949	ENSSMAG00000006274	ENSSMAG00000006222	c1qtnf4 (ENSSMAG00000030864)	ENSSMAG00000006194	ptpmt1 (ENSSMAG00000006187)	prc1b (ENSSMAG00000006152)	vps33b (ENSSMAG00000006116)	hddc3 (ENSSMAG00000006096)	mfap1 (ENSSMAG00000006029)	hypk (ENSSMAG00000006081)
Tongue sole	MODERN SPECIES	25	ENSCSEG00000011338	ENSCSEG00000011313	ENSCSEG00000011305	BRSK2 (ENSCSEG00000011247)	ENSCSEG00000011220 ##33	CORO2B (ENSCSEG00000011186)	anp32a (ENSCSEG00000011176)	glceb (ENSCSEG00000011164)	paqr5a (ENSCSEG00000011095)	ero1a (ENSCSEG00000011060)	pacsin3 (ENSCSEG00000011036)	glg1b (ENSCSEG00000010964)	tnni2b.1 (ENSCSEG00000010949)	aph1b (ENSCSEG00000010946)	OTOG (ENSCSEG00000010918)	myod1 (ENSCSEG00000010907) ##22
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00950000182959.b.b.f ##22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00950000182959.b.b.f ##22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00950000182959.b.b.f ##22
Tiger tail seahorse	MODERN SPECIES	496	ENSHCOG00000009000	ENSHCOG00000009005	ENSHCOG00000009038	znf277 (ENSHCOG00000009285)	immp2l (ENSHCOG00000009329)	ENSHCOG00000009337	ENSHCOG00000009421	DUS2 (ENSHCOG00000009462)	SLC7A10 (ENSHCOG00000009496)	urahb (ENSHCOG00000009505)	ENSHCOG00000009602	ENSHCOG00000009616	LRTM2 (ENSHCOG00000009629)	CACNA2D4 (ENSHCOG00000009660)	ENSHCOG00000009665	MYOD1 (ENSHCOG00000009682) ##22	ENSHCOG00000009758	ENSHCOG00000009794	dldh (ENSHCOG00000009848)	ENSHCOG00000009869	tnni2a.1 (ENSHCOG00000009875)	tnni2a.2 (ENSHCOG00000009882)	ENSHCOG00000009905
Elephant shark	MODERN SPECIES	1493	ENSCMIG00000013246	ENSCMIG00000013240	ENSCMIG00000013224	ENSCMIG00000013206	ENSCMIG00000013201	ENSCMIG00000013198	ENSCMIG00000013195	ENSCMIG00000013191	ENSCMIG00000013179	kcnj11 (ENSCMIG00000013178)	abcc8 (ENSCMIG00000012502)	ENSCMIG00000012071	ush1c (ENSCMIG00000012065)	OTOG (ENSCMIG00000012027)	zgc:172145 (ENSCMIG00000012006)	myod1 (ENSCMIG00000012005) ##22	ctsd (ENSCMIG00000011996)	ENSCMIG00000011990	ENSCMIG00000011984	ENSCMIG00000011979	ENSCMIG00000011975	ENSCMIG00000011961	ENSCMIG00000011952	tnnt3a (ENSCMIG00000011947)	gatd1 (ENSCMIG00000011899)	taldo1 (ENSCMIG00000011878)	EPS8L2 (ENSCMIG00000011869)	ENSCMIG00000011858	ENSCMIG00000011856	syt7b (ENSCMIG00000011838)	DAGLA (ENSCMIG00000011824)
Cyclostomata	ANCESTRAL SPECIES	760															ENSGT00940000157490	ENSGT00950000182959.b ##22
Hagfish	MODERN SPECIES	1080	ENSEBUG00000004974	ENSEBUG00000014754	spon1a (ENSEBUG00000007462)	ENSEBUG00000010027	ENSEBUG00000005353	ENSEBUG00000013199	ENSEBUG00000000768	ENSEBUG00000016756	ndufs3 (ENSEBUG00000002805)	ENSEBUG00000010585	ENSEBUG00000004846	ENSEBUG00000014462	ENSEBUG00000009390 #19	ENSEBUG00000015193	ENSEBUG00000010939	ENSEBUG00000007373 ##22	ENSEBUG00000005797	ENSEBUG00000009577	ENSEBUG00000013518	ENSEBUG00000008274	ENSEBUG00000001026	ENSEBUG00000012516	ENSEBUG00000010957	ENSEBUG00000013329	taf8 (ENSEBUG00000007222)	ENSEBUG00000010730	ENSEBUG00000011613
Ciona	ANCESTRAL SPECIES	1183																ENSGT00950000182959 #22	ENSGT00940000173570
Ciona intestinalis	MODERN SPECIES	5	ENSCING00000024307	ENSCING00000019066	ENSCING00000020298	ENSCING00000014368	ENSCING00000014369	ENSCING00000014370	ENSCING00000002349	ENSCING00000014371	ENSCING00000002358	ENSCING00000014373	ENSCING00000014372	ENSCING00000010123	ENSCING00000018164	ENSCING00000002361	ENSCING00000002393	myod (ENSCING00000007328) #22	ENSCING00000007327	ENSCING00000010042	ENSCING00000007324	ENSCING00000014375	uglcat2 (ENSCING00000007320)	ENSCING00000007316	ENSCING00000019443	ENSCING00000010041	ENSCING00000007314	ENSCING00000007312	ENSCING00000007285	ENSCING00000007286	ENSCING00000014382	ENSCING00000014381	ENSCING00000007289
Ciona savignyi	MODERN SPECIES	160	ENSCSAVG00000004275	ENSCSAVG00000004269	ENSCSAVG00000004263	ENSCSAVG00000004259	ENSCSAVG00000004254	ENSCSAVG00000004252	ENSCSAVG00000004242	ENSCSAVG00000004196	ENSCSAVG00000003039	ENSCSAVG00000003026	ENSCSAVG00000003021	ENSCSAVG00000002969	ENSCSAVG00000002966	ENSCSAVG00000002964	ENSCSAVG00000002956	ENSCSAVG00000002947 #22	ENSCSAVG00000002944	ENSCSAVG00000002644	ENSCSAVG00000002640	ENSCSAVG00000002636	ENSCSAVG00000002625