Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00860000133854	ENSGT00940000158239.b	ENSGT00940000159606	ENSGT00940000155861.C #12	ENSGT00940000156444 #13	ENSGT00390000005159 #14	ENSGT00390000018209	ENSGT00940000155390 #15	ENSGT00940000158202 #16	ENSGT00400000022323	ENSGT00940000160319 #17	ENSGT00940000160994	ENSGT00530000064199 #18	ENSGT00390000010316 #19	ENSGT00390000011295.a #20	ENSGT00390000015228 #22	ENSGT00390000003590 #23	ENSGT00940000153189.B #24	ENSGT00940000159722 #25	ENSGT00390000012561.b #27	ENSGT00950000183114.a.b.b.f.a.b #28	ENSGT00950000183114.a.b.b.f.a.a #29	ENSGT00950000183114.a.b.b.f.b #30	ENSGT00940000154107.b	ENSGT00530000064234 #31	ENSGT00390000001138.b #32	ENSGT00390000004145 #33	ENSGT00940000158493 #34	ENSGT00390000005550 #35	ENSGT00390000005581.b	ENSGT00390000008096.B #36
Hystricomorpha	ANCESTRAL SPECIES	20					ENSGT00940000155861.C #12	ENSGT00940000156444 #13	ENSGT00390000005159 #14	ENSGT00940000155390 #15	ENSGT00940000158202 #16	ENSGT00400000022323	ENSGT00940000160319 #17	ENSGT00940000160994	ENSGT00530000064199 #18	ENSGT00390000010316 #19	ENSGT00390000011295.a #20	ENSGT00390000015228 #22	ENSGT00390000003590 #23	ENSGT00940000153189.B #24	ENSGT00940000159722 #25	ENSGT00390000012561.b #27	ENSGT00950000183114.a.b.b.f.a.b #28	ENSGT00950000183114.a.b.b.f.a.a #29	ENSGT00950000183114.a.b.b.f.b #30	ENSGT00940000154107.b	ENSGT00530000064234 #31	ENSGT00390000001138.b #32	ENSGT00390000004145 #33	ENSGT00940000158493 #34	ENSGT00390000005550 #35	ENSGT00390000008096.B #36	ENSGT00940000158407 #37
Hystricomorpha_a	ANCESTRAL SPECIES	17					ENSGT00940000155861.C #12	ENSGT00940000156444 #13	ENSGT00390000005159 #14	ENSGT00940000155390 #15	ENSGT00940000158202 #16	ENSGT00400000022323	ENSGT00940000160319 #17	ENSGT00940000160994	ENSGT00530000064199 #18	ENSGT00390000010316 #19	ENSGT00390000011295.a #20	ENSGT00390000015228 #22	ENSGT00390000003590 #23	ENSGT00940000153189.B #24	ENSGT00940000159722 #25	ENSGT00390000012561.b #27	ENSGT00950000183114.a.b.b.f.a.b #28	ENSGT00950000183114.a.b.b.f.a.a #29	ENSGT00950000183114.a.b.b.f.b #30	ENSGT00940000154107.b	ENSGT00530000064234 #31	ENSGT00390000001138.b #32	ENSGT00390000004145 #33	ENSGT00940000158493 #34	ENSGT00390000005550 #35	ENSGT00390000008096.B #36	ENSGT00940000158407 #37
Hystricomorpha_b	ANCESTRAL SPECIES	24						ENSGT00940000155861.C #12	ENSGT00940000156444 #13	ENSGT00390000005159 #14	ENSGT00940000155390 #15	ENSGT00940000158202 #16	ENSGT00400000022323	ENSGT00940000160319 #17	ENSGT00530000064199 #18	ENSGT00390000010316 #19	ENSGT00390000011295.a #20	ENSGT00390000015228 #22	ENSGT00390000003590 #23	ENSGT00940000153189.B #24	ENSGT00940000159722 #25	ENSGT00390000012561.b #27	ENSGT00950000183114.a.b.b.f.a.b #28	ENSGT00950000183114.a.b.b.f.a.a #29	ENSGT00950000183114.a.b.b.f.b #30	ENSGT00940000154107.b	ENSGT00530000064234 #31	ENSGT00390000001138.b #32	ENSGT00390000004145 #33	ENSGT00940000158493 #34	ENSGT00390000005550 #35	ENSGT00390000008096.B #36	ENSGT00940000158407 #37
Degu	MODERN SPECIES	66			ENSODEG00000010587 #9	ENSODEG00000019906 #10	ENSODEG00000008122 #11	ALS2 (ENSODEG00000007275) #12	MPP4 (ENSODEG00000009252) #13	TMEM237 (ENSODEG00000009685) #14	STRADB (ENSODEG00000010540) #15	TRAK2 (ENSODEG00000007402) #16	CASP8 (ENSODEG00000009065) #17	CFLAR (ENSODEG00000009559) #18	NDUFB3 (ENSODEG00000010233) #19	HYCC2 (ENSODEG00000008316) #20	ENSODEG00000007860 #21	ORC2 (ENSODEG00000008853) #22	NIF3L1 (ENSODEG00000008894) #23	PPIL3 (ENSODEG00000007592) #24	CLK1 (ENSODEG00000009021) #25	ENSODEG00000019563 #26	ENSODEG00000008411 #27	ENSODEG00000008135 #28	ENSODEG00000011138 #29	AOX1 (ENSODEG00000012914) #30	ENSODEG00000009211 #31	SPATS2L (ENSODEG00000009851) #32	MAIP1 (ENSODEG00000008914) #33	TYW5 (ENSODEG00000009836) #34	C2orf69 (ENSODEG00000008700) #35	SATB2 (ENSODEG00000008383) #36	PLCL1 (ENSODEG00000008918) #37
Long-tailed chinchilla	MODERN SPECIES	110						ALS2 (ENSCLAG00000012306) #12	MPP4 (ENSCLAG00000013668) #13	TMEM237 (ENSCLAG00000011765) #14	STRADB (ENSCLAG00000012985) #15	TRAK2 (ENSCLAG00000013378) #16	FLACC1 (ENSCLAG00000013356)	CASP8 (ENSCLAG00000012773) #17	CFLAR (ENSCLAG00000013322) #18	NDUFB3 (ENSCLAG00000012349) #19	HYCC2 (ENSCLAG00000011177) #20	ORC2 (ENSCLAG00000013209) #22	NIF3L1 (ENSCLAG00000013524) #23	PPIL3 (ENSCLAG00000014050) #24	CLK1 (ENSCLAG00000011455) #25	BZW1 (ENSCLAG00000012079) #27	ENSCLAG00000011199 #28	ENSCLAG00000014402 #29	AOX1 (ENSCLAG00000011481) #30	ENSCLAG00000012456	ENSCLAG00000014377 #31	SPATS2L (ENSCLAG00000013167) #32	MAIP1 (ENSCLAG00000011913) #33	TYW5 (ENSCLAG00000012009) #34	C2orf69 (ENSCLAG00000012813) #35	SATB2 (ENSCLAG00000016994) #36	PLCL1 (ENSCLAG00000016098) #37
Guinea pig	MODERN SPECIES	104					ALS2 (ENSCPOG00000014263) #12	MPP4 (ENSCPOG00000014262) #13	TMEM237 (ENSCPOG00000040314) #14	STRADB (ENSCPOG00000013028) #15	TRAK2 (ENSCPOG00000007002) #16	ENSCPOG00000024803	CASP8 (ENSCPOG00000009618) #17	CASP10 (ENSCPOG00000024282)	CFLAR (ENSCPOG00000000098) #18	NDUFB3 (ENSCPOG00000038261) #19	HYCC2 (ENSCPOG00000010108) #20	ORC2 (ENSCPOG00000004552) #22	NIF3L1 (ENSCPOG00000008572) #23	PPIL3 (ENSCPOG00000008570) #24	CLK1 (ENSCPOG00000027067) #25	ENSCPOG00000010449 #27	ENSCPOG00000019962 #28	ENSCPOG00000033032 #29	Aox1 (ENSCPOG00000025955) #30	ENSCPOG00000002722	ENSCPOG00000012077 #31	SPATS2L (ENSCPOG00000003190) #32	MAIP1 (ENSCPOG00000003800) #33	TYW5 (ENSCPOG00000035856) #34	C2orf69 (ENSCPOG00000009934) #35	SATB2 (ENSCPOG00000015198) #36	PLCL1 (ENSCPOG00000011478) #37
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	22	ENSHGLG00000008087	ENSHGLG00000001281	ENSHGLG00000036950	ENSHGLG00000000589	ENSHGLG00000049200	ENSHGLG00000019899	ENSHGLG00000035836	ENSHGLG00000046184	ENSHGLG00000000440	ENSHGLG00000035585	ENSHGLG00000042573	ENSHGLG00000035177	CFLAR (ENSHGLG00000042118) #18	NDUFB3 (ENSHGLG00000035364) #19	ENSHGLG00000009432 #20	ENSHGLG00000010323 #22	ENSHGLG00000035207	NIF3L1 (ENSHGLG00000010669) #23	PPIL3 (ENSHGLG00000035729) #24	Clk1 (ENSHGLG00000011322) #25	BZW1 (ENSHGLG00000011961) #27	ENSHGLG00000012205 #28	Aox4 (ENSHGLG00000012471) #29	AOX1 (ENSHGLG00000012876) #30	SGO2 (ENSHGLG00000015359)	ENSHGLG00000047532	ENSHGLG00000015370 #31	SPATS2L (ENSHGLG00000015420) #32	ENSHGLG00000017615	MAIP1 (ENSHGLG00000017548) #33	TYW5 (ENSHGLG00000017557) #34
Naked mole-rat female	MODERN SPECIES	14	OR6B1 (ENSHGLG00000020632)	ENSHGLG00000020363	ENSHGLG00000008982	ENSHGLG00000011877	ENSHGLG00000016410	ENSHGLG00000020881	ENSHGLG00000021377	ENSHGLG00000049035	EPHA1 (ENSHGLG00000007593)	ZYX (ENSHGLG00000011336)	FAM131B (ENSHGLG00000008404)	CLCN1 (ENSHGLG00000005159)	CASP2 (ENSHGLG00000034165)	ENSHGLG00000045307	GSTK1 (ENSHGLG00000043428)	ENSHGLG00000047349 #22	ENSHGLG00000020620	PIP (ENSHGLG00000044011)	ENSHGLG00000043959	ENSHGLG00000040648	KEL (ENSHGLG00000015502)	ENSHGLG00000038976	ENSHGLG00000006227	ENSHGLG00000032016	ENSHGLG00000000335	ENSHGLG00000010041	ENSHGLG00000011697	ENSHGLG00000030828	ENSHGLG00000050664	ENSHGLG00000036707	ENSHGLG00000039158
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00860000133854	ENSGT00940000158239.b	ENSGT00940000159606	ENSGT00940000155861.C #12	ENSGT00940000156444 #13	ENSGT00390000005159 #14	ENSGT00390000018209	ENSGT00940000155390 #15	ENSGT00940000158202 #16	ENSGT00400000022323	ENSGT00940000160319 #17	ENSGT00940000160994	ENSGT00530000064199 #18	ENSGT00390000010316 #19	ENSGT00390000011295.a #20	ENSGT00390000015228 #22	ENSGT00390000003590 #23	ENSGT00940000153189.B #24	ENSGT00940000159722 #25	ENSGT00390000012561.b #27	ENSGT00950000183114.a.b.b.f.a.b #28	ENSGT00950000183114.a.b.b.f.a.a #29	ENSGT00950000183114.a.b.b.f.b #30	ENSGT00940000154107.b	ENSGT00530000064234 #31	ENSGT00390000001138.b #32	ENSGT00390000004145 #33	ENSGT00940000158493 #34	ENSGT00390000005550 #35	ENSGT00390000005581.b	ENSGT00390000008096.B #36
Marmotini	ANCESTRAL SPECIES	2	ENSGT00940000158239.b	ENSGT00940000159606	ENSGT00940000155861.C #12	ENSGT00390000000560.m.a.b	ENSGT00940000156444 #13	ENSGT00390000005159 #14	ENSGT00390000018209	ENSGT00940000155390 #15	ENSGT00940000158202 #16	ENSGT00400000022323	ENSGT00940000160319 #17	ENSGT00940000160994	ENSGT00530000064199 #18	ENSGT00390000010316 #19	ENSGT00390000011295.a #20	ENSGT00390000015228 #22	ENSGT00390000003590 #23	ENSGT00940000153189.B #24	ENSGT00940000159722 #25	ENSGT00390000012561.b.v #27	ENSGT00950000183114.a.b.b.f.a.b #28	ENSGT00950000183114.a.b.b.f.a.a #29	ENSGT00950000183114.a.b.b.f.b #30	ENSGT00940000154107.b	ENSGT00530000064234 #31	ENSGT00390000001138.b #32	ENSGT00390000004145 #33	ENSGT00940000158493 #34	ENSGT00390000005550 #35	ENSGT00390000005581.b	ENSGT00390000012178.g.a.a #10
Marmotini_b	ANCESTRAL SPECIES	103	ENSGT00940000158239.b	ENSGT00940000159606	ENSGT00940000155861.C #12	ENSGT00390000000560.m.a.b	ENSGT00940000156444 #13	ENSGT00390000005159 #14	ENSGT00390000018209	ENSGT00940000155390 #15	ENSGT00940000158202 #16	ENSGT00400000022323	ENSGT00940000160319 #17	ENSGT00940000160994	ENSGT00530000064199 #18	ENSGT00390000010316 #19	ENSGT00390000011295.a #20	ENSGT00390000015228 #22	ENSGT00390000003590 #23	ENSGT00940000153189.B #24	ENSGT00940000159722 #25	ENSGT00390000012561.b.v #27	ENSGT00950000183114.a.b.b.f.a.b #28
Arctic ground squirrel	MODERN SPECIES	317	KIAA2012 (ENSUPAG00010014115)	FZD7 (ENSUPAG00010014150)	CDK15 (ENSUPAG00010014153)	ALS2 (ENSUPAG00010014184) #12	MPP4 (ENSUPAG00010014266) #13	TMEM237 (ENSUPAG00010014479) #14	ENSUPAG00010014524	STRADB (ENSUPAG00010014591) #15	TRAK2 (ENSUPAG00010014606) #16	FLACC1 (ENSUPAG00010014658)	CASP8 (ENSUPAG00010014705) #17	CASP10 (ENSUPAG00010014765)	CFLAR (ENSUPAG00010014940) #18	NDUFB3 (ENSUPAG00010014966) #19	HYCC2 (ENSUPAG00010014985) #20	ORC2 (ENSUPAG00010015014) #22	NIF3L1 (ENSUPAG00010015151) #23	PPIL3 (ENSUPAG00010015181) #24	CLK1 (ENSUPAG00010015196) #25	ENSUPAG00010015320 #27	ENSUPAG00010015353 #28
Squirrel	MODERN SPECIES	326	FZD7 (ENSSTOG00000020705)	CDK15 (ENSSTOG00000016128)	ALS2 (ENSSTOG00000016119) #12	ENSSTOG00000029531	MPP4 (ENSSTOG00000025322) #13	TMEM237 (ENSSTOG00000025175) #14	STRADB (ENSSTOG00000021132) #15	TRAK2 (ENSSTOG00000002930) #16	FLACC1 (ENSSTOG00000006296)	CASP8 (ENSSTOG00000011342) #17	ENSSTOG00000022094	CASP10 (ENSSTOG00000002364)	CFLAR (ENSSTOG00000009642) #18	NDUFB3 (ENSSTOG00000009635) #19	HYCC2 (ENSSTOG00000023641) #20	ORC2 (ENSSTOG00000019442) #22	NIF3L1 (ENSSTOG00000030641) #23	PPIL3 (ENSSTOG00000028255) #24	CLK1 (ENSSTOG00000009578) #25	ENSSTOG00000030689 #27	ENSSTOG00000020989 #28
Alpin marmot	MODERN SPECIES	8	KIAA2012 (ENSMMMG00000012837)	CDK15 (ENSMMMG00000012752)	ALS2 (ENSMMMG00000012683) #12	ENSMMMG00000012669	MPP4 (ENSMMMG00000012482) #13	TMEM237 (ENSMMMG00000012468) #14	ENSMMMG00000012437	STRADB (ENSMMMG00000012410) #15	TRAK2 (ENSMMMG00000012358) #16	FLACC1 (ENSMMMG00000012333)	CASP8 (ENSMMMG00000012315) #17	CASP10 (ENSMMMG00000012307)	CFLAR (ENSMMMG00000012269) #18	ENSMMMG00000012253 #19	HYCC2 (ENSMMMG00000012182) #20	ORC2 (ENSMMMG00000012136) #22	NIF3L1 (ENSMMMG00000012077) #23	PPIL3 (ENSMMMG00000012069) #24	CLK1 (ENSMMMG00000012051) #25	ENSMMMG00000012026 #27	ENSMMMG00000011976 #28	ENSMMMG00000011959	ENSMMMG00000011912 #29	AOX1 (ENSMMMG00000011886) #30	ENSMMMG00000011877	KCTD18 (ENSMMMG00000011839) #31	SPATS2L (ENSMMMG00000011689) #32	MAIP1 (ENSMMMG00000011679) #33	TYW5 (ENSMMMG00000011668) #34	C2orf69 (ENSMMMG00000011660) #35	FTCDNL1 (ENSMMMG00000011655)
Eurasian red squirrel	MODERN SPECIES	12	TMEM237 (ENSSVLG00005004927) #14	ENSSVLG00005004791	STRADB (ENSSVLG00005004739) #15	ENSSVLG00005004684 #16	FLACC1 (ENSSVLG00005004644)	ENSSVLG00005004626	CASP8 (ENSSVLG00005004545) #17	ENSSVLG00005004469	ENSSVLG00005004452	CASP10 (ENSSVLG00005004333)	ENSSVLG00005004275	CFLAR (ENSSVLG00005004210) #18	NDUFB3 (ENSSVLG00005004178) #19	HYCC2 (ENSSVLG00005004160) #20	ENSSVLG00005004143	ORC2 (ENSSVLG00005004127) #22	ENSSVLG00005004114	NIF3L1 (ENSSVLG00005004091) #23	PPIL3 (ENSSVLG00005004070) #24	CLK1 (ENSSVLG00005004020) #25	BZW1 (ENSSVLG00005003945) #27	ENSSVLG00005003845 #28	ENSSVLG00005003767 #29	AOX1 (ENSSVLG00005003683) #30	SGO2 (ENSSVLG00005003633)	ENSSVLG00005003604 #31	SPATS2L (ENSSVLG00005003512) #32	MAIP1 (ENSSVLG00005003433) #33	TYW5 (ENSSVLG00005003405) #34	C2orf69 (ENSSVLG00005003387) #35	FTCDNL1 (ENSSVLG00005003343)