Boreoeutheria	ANCESTRAL SPECIES	14	ENSGT00940000162304	ENSGT00570000080031	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Primates	ANCESTRAL SPECIES	13	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Catarrhini	ANCESTRAL SPECIES	16	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00910000147400 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a ##31	ENSGT00910000147200 #30	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.jb #34	ENSGT00390000010116.kb #35	ENSGT00940000162151 #36
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00940000162304	ENSGT00730000111135.g	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00950000182827.A.i.b #15	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00910000147400 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a ##31	ENSGT00910000147200 #30	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.jb #34	ENSGT00390000010116.kb #35	ENSGT00940000162151 #36
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00940000162304	ENSGT00730000111135.g	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00950000182827.A.i.b #15	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00910000147400 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00910000147200 #30	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.jb #34	ENSGT00390000010116.kb #35	ENSGT00940000162151 #36	ENSGT00390000010991.f.b
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00940000165163 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00950000182827.A.i.b #15	ENSGT00390000001859 #16	ENSGT00950000182922.a.a.a.b.a.a.b.b #17	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00910000147400 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00910000147200 #30	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.jb #34	ENSGT00390000010116.kb #35	ENSGT00940000162151 #36	ENSGT00390000010991.f.b
Macaca	ANCESTRAL SPECIES	15	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00940000165163 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00390000018390.jc.n #11	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00950000182827.A.i.b #15	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00910000147400 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00910000147200 #30	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.jb #34	ENSGT00390000010116.kb #35	ENSGT00940000162151 #36	ENSGT00940000168702
Pig-tailed macaque	MODERN SPECIES	585	GPR155 (ENSMNEG00000028550) #7	ENSMNEG00000031252 #8	WIPF1 (ENSMNEG00000045560) #9	CHRNA1 (ENSMNEG00000043912) #10	ENSMNEG00000009103 #11	CHN1 (ENSMNEG00000033120) #12	ATF2 (ENSMNEG00000037988) #13	ATP5MC3 (ENSMNEG00000029106) #14	ENSMNEG00000035184 #15	LNPK (ENSMNEG00000028702) #16	ENSMNEG00000024050 #17	EVX2 (ENSMNEG00000028323) #18	HOXD13 (ENSMNEG00000027142) #19	HOXD12 (ENSMNEG00000002891) #20	HOXD11 (ENSMNEG00000029127) #21	HOXD10 (ENSMNEG00000033923) #22	HOXD9 (ENSMNEG00000044938) #23	HOXD8 (ENSMNEG00000028133) #24	HOXD4 (ENSMNEG00000030845) #25	HOXD3 (ENSMNEG00000040202) #26	ENSMNEG00000018849 #27	HOXD1 (ENSMNEG00000010514) #28	MTX2 (ENSMNEG00000032881) #29	ENSMNEG00000026533 #30	ENSMNEG00000034936 #31	NFE2L2 (ENSMNEG00000028208) #32	AGPS (ENSMNEG00000043672) #33	TTC30B (ENSMNEG00000011632) #34	TTC30A (ENSMNEG00000000192) #35	PDE11A (ENSMNEG00000037080) #36
Macaca_a	ANCESTRAL SPECIES	17	ENSGT00730000111135.g	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00940000166143.A.a.b.b.b.b.a.b.b	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00950000182827.A.j ##15	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00910000147400 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000170471.B.a.a.a	ENSGT00910000147200 #30	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.jb #34	ENSGT00390000010116.kb #35	ENSGT00940000162151 #36
Crab-eating macaque	MODERN SPECIES	3	SCRN3 (ENSMFAG00000042925)	ENSMFAG00000056942	ENSMFAG00000039499 #8	ENSMFAG00000060672	WIPF1 (ENSMFAG00000034165) #9	CHRNA1 (ENSMFAG00000042992) #10	CHN1 (ENSMFAG00000002404) #12	ATF2 (ENSMFAG00000002278) #13	ATP5MC3 (ENSMFAG00000056189) #14	ENSMFAG00000002936 ##15	LNPK (ENSMFAG00000002105) #16	ENSMFAG00000053875 #17	HOXD13 (ENSMFAG00000033237) #19	HOXD12 (ENSMFAG00000051547) #20	ENSMFAG00000043724 #21	HOXD10 (ENSMFAG00000031117) #22	HOXD9 (ENSMFAG00000000099) #23	HOXD8 (ENSMFAG00000065214) #24	HOXD4 (ENSMFAG00000052240) #25	HOXD3 (ENSMFAG00000034065) #26	ENSMFAG00000047422 #27	HOXD1 (ENSMFAG00000046035) #28	MTX2 (ENSMFAG00000026822) #29	ENSMFAG00000065500	ENSMFAG00000058081 #30	HNRNPA3 (ENSMFAG00000000823) ##31	NFE2L2 (ENSMFAG00000041108) #32	AGPS (ENSMFAG00000038904) #33	TTC30B (ENSMFAG00000057741) #34	TTC30A (ENSMFAG00000053112) #35	PDE11A (ENSMFAG00000042268) #36
Rhesus	MODERN SPECIES	3	SP9 (ENSMMUG00000023005)	CIR1 (ENSMMUG00000023006)	SCRN3 (ENSMMUG00000023009)	GPR155 (ENSMMUG00000021012) #7	ENSMMUG00000053004	WIPF1 (ENSMMUG00000009593) #9	CHRNA1 (ENSMMUG00000021796) #10	CHN1 (ENSMMUG00000021797) #12	ATF2 (ENSMMUG00000003947) #13	ATP5MC3 (ENSMMUG00000003954) #14	LNPK (ENSMMUG00000023498) #16	EVX2 (ENSMMUG00000061506) #18	HOXD13 (ENSMMUG00000055831) #19	HOXD12 (ENSMMUG00000023501) #20	HOXD11 (ENSMMUG00000047915) #21	HOXD10 (ENSMMUG00000046368) #22	HOXD9 (ENSMMUG00000032599) #23	HOXD8 (ENSMMUG00000023504) #24	HOXD4 (ENSMMUG00000060947) #25	HOXD3 (ENSMMUG00000051761) #26	ENSMMUG00000052177 #27	HOXD1 (ENSMMUG00000065344) #28	MTX2 (ENSMMUG00000010185) #29	ENSMMUG00000031367	ENSMMUG00000054983	ENSMMUG00000062299 #30	HNRNPA3 (ENSMMUG00000001858) ##31	NFE2L2 (ENSMMUG00000001861) #32	ENSMMUG00000065205	AGPS (ENSMMUG00000008502) #33	TTC30B (ENSMMUG00000043597) #34
Cercopithecinae_b	ANCESTRAL SPECIES	10	ENSGT00390000004153 #7	ENSGT00940000165163 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00950000182827.A.i.b #15	ENSGT00950000182827.A.j ##15	ENSGT00390000001859 #16	ENSGT00950000182922.a.a.a.b.a.a.b.b #17	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00910000147400 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00910000147200 #30	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.jb #34	ENSGT00390000010116.kb #35	ENSGT00940000162151 #36	ENSGT00390000010991.f.b
Olive baboon	MODERN SPECIES	1	SP9 (ENSPANG00000051025)	CIR1 (ENSPANG00000033102)	SCRN3 (ENSPANG00000001316)	GPR155 (ENSPANG00000006559) #7	WIPF1 (ENSPANG00000019541) #9	CHRNA1 (ENSPANG00000007790) #10	CHN1 (ENSPANG00000008236) #12	ENSPANG00000005473 #11	ATF2 (ENSPANG00000004806) #13	ATP5MC3 (ENSPANG00000031591) #14	LNPK (ENSPANG00000011787) #16	ENSPANG00000039545 #18	ENSPANG00000044695 #19	ENSPANG00000044332 #20	HOXD11 (ENSPANG00000049530) #21	HOXD10 (ENSPANG00000050198) #22	HOXD9 (ENSPANG00000001061) #23	HOXD8 (ENSPANG00000049199) #24	HOXD4 (ENSPANG00000000542) #25	HOXD3 (ENSPANG00000000543) #26	HOXD1 (ENSPANG00000009593) #28	MTX2 (ENSPANG00000013333) #29	ENSPANG00000045287	ENSPANG00000018337 ##31	NFE2L2 (ENSPANG00000039361) #32	AGPS (ENSPANG00000004764) #33	TTC30B (ENSPANG00000046724) #34	TTC30A (ENSPANG00000041839) #35	PDE11A (ENSPANG00000025222) #36	ENSPANG00000029672	RBM45 (ENSPANG00000016088)
Cercopithecinae_d	ANCESTRAL SPECIES		ENSGT00390000004153 #7	ENSGT00940000165163 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00950000182827.A.i.b #15	ENSGT00950000182827.A.j ##15	ENSGT00390000001859 #16	ENSGT00950000182922.a.a.a.b.a.a.b.b #17	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00910000147400 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00910000147200 #30	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.jb #34	ENSGT00390000010116.kb #35	ENSGT00940000162151 #36	ENSGT00390000010991.f.b
Drill	MODERN SPECIES	1072	SCRN3 (ENSMLEG00000043626)	GPR155 (ENSMLEG00000027961) #7	ENSMLEG00000029654 #8	WIPF1 (ENSMLEG00000001484) #9	CHRNA1 (ENSMLEG00000043089) #10	ENSMLEG00000000615 #11	CHN1 (ENSMLEG00000032406) #12	ATF2 (ENSMLEG00000035167) #13	ATP5MC3 (ENSMLEG00000043816) #14	ENSMLEG00000001270 ##15	LNPK (ENSMLEG00000033659) #16	EVX2 (ENSMLEG00000035528) #18	HOXD13 (ENSMLEG00000031532) #19	HOXD12 (ENSMLEG00000032533) #20	ENSMLEG00000030792 #21	HOXD10 (ENSMLEG00000044067) #22	HOXD9 (ENSMLEG00000025695) #23	ENSMLEG00000042507 #24	HOXD4 (ENSMLEG00000024188) #25	HOXD3 (ENSMLEG00000037278) #26	HOXD1 (ENSMLEG00000035890) #28	MTX2 (ENSMLEG00000002029) #29	NFE2L2 (ENSMLEG00000042705) #32	AGPS (ENSMLEG00000033858) #33	TTC30B (ENSMLEG00000027894) #34	TTC30A (ENSMLEG00000027775) #35	ENSMLEG00000039892	ENSMLEG00000035955	PDE11A (ENSMLEG00000044286) #36	RBM45 (ENSMLEG00000042404)	OSBPL6 (ENSMLEG00000021439)
Sooty mangabey	MODERN SPECIES	570	SCRN3 (ENSCATG00000032178)	GPR155 (ENSCATG00000033300) #7	WIPF1 (ENSCATG00000022645) #9	CHRNA1 (ENSCATG00000030584) #10	CHN1 (ENSCATG00000036640) #12	ENSCATG00000035911 #11	ATF2 (ENSCATG00000005694) #13	ATP5MC3 (ENSCATG00000035329) #14	ENSCATG00000037951 #15	ENSCATG00000041432	LNPK (ENSCATG00000039052) #16	ENSCATG00000005782 #17	EVX2 (ENSCATG00000038250) #18	HOXD13 (ENSCATG00000031889) #19	HOXD12 (ENSCATG00000032043) #20	HOXD10 (ENSCATG00000032256) #22	HOXD11 (ENSCATG00000031157) #21	HOXD9 (ENSCATG00000037190) #23	HOXD8 (ENSCATG00000032148) #24	HOXD4 (ENSCATG00000041719) #25	HOXD3 (ENSCATG00000029355) #26	ENSCATG00000032250 #27	HOXD1 (ENSCATG00000032397) #28	MTX2 (ENSCATG00000039959) #29	ENSCATG00000022731 #30	HNRNPA3 (ENSCATG00000032162) ##31	ENSCATG00000001855	NFE2L2 (ENSCATG00000036834) #32	AGPS (ENSCATG00000038387) #33	TTC30B (ENSCATG00000004635) #34	TTC30A (ENSCATG00000000123) #35
Vervet Monkey	MODERN SPECIES	1	SP3 (ENSCSAG00000014689)	OLA1 (ENSCSAG00000014670)	SP9 (ENSCSAG00000014648)	CIR1 (ENSCSAG00000014627)	SCRN3 (ENSCSAG00000014584)	GPR155 (ENSCSAG00000014572) #7	WIPF1 (ENSCSAG00000014556) #9	CHRNA1 (ENSCSAG00000014545) #10	CHN1 (ENSCSAG00000014539) #12	ATF2 (ENSCSAG00000014523) #13	LNPK (ENSCSAG00000014506) #16	EVX2 (ENSCSAG00000014486) #18	HOXD13 (ENSCSAG00000014475) #19	HOXD12 (ENSCSAG00000014464) #20	HOXD11 (ENSCSAG00000014457) #21	HOXD10 (ENSCSAG00000014448) #22	HOXD9 (ENSCSAG00000014441) #23	HOXD8 (ENSCSAG00000014437) #24	HOXD4 (ENSCSAG00000014429) #25	HOXD3 (ENSCSAG00000014422) #26	HOXD1 (ENSCSAG00000014419) #28	MTX2 (ENSCSAG00000014412) #29	ENSCSAG00000014399 ##31	NFE2L2 (ENSCSAG00000014353) #32	AGPS (ENSCSAG00000014345) #33	TTC30A (ENSCSAG00000018651) #35	PDE11A (ENSCSAG00000014313) #36	ENSCSAG00000014240	RBM45 (ENSCSAG00000014231)	OSBPL6 (ENSCSAG00000014221)	PJVK (ENSCSAG00000014212)
Rhinopithecus	ANCESTRAL SPECIES	148								ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00950000182827.A.i.b #15	ENSGT00390000001859.c #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00940000154301.`b.a	ENSGT00960000186717.a	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a ##31	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.kb #35	ENSGT00940000162151 #36	ENSGT00390000010991.f.b
Black snub-nosed monkey	MODERN SPECIES	241									ATF2 (ENSRBIG00000041657) #13	ATP5MC3 (ENSRBIG00000040343) #14	ENSRBIG00000038159 #15	LNPK (ENSRBIG00000038235) #16	HOXD13 (ENSRBIG00000033719) #19	ENSRBIG00000035253 #21	HOXD12 (ENSRBIG00000040792) #20	HOXD10 (ENSRBIG00000030470) #22	HOXD9 (ENSRBIG00000035340) #23	HOXD8 (ENSRBIG00000036417) #24	HOXD4 (ENSRBIG00000027637) #25	HOXD3 (ENSRBIG00000044829) #26	HOXD1 (ENSRBIG00000031297) #28	ENSRBIG00000032024	ENSRBIG00000042767	MTX2 (ENSRBIG00000043097) #29	ENSRBIG00000012615 ##31	NFE2L2 (ENSRBIG00000042825) #32	AGPS (ENSRBIG00000039582) #33	TTC30A (ENSRBIG00000041155) #35	ENSRBIG00000030274	ENSRBIG00000035583	PDE11A (ENSRBIG00000043623) #36
Golden snub-nosed monkey	MODERN SPECIES	722									ENSRROG00000041768 #16	ENSRROG00000044546	EVX2 (ENSRROG00000044705) #18	HOXD13 (ENSRROG00000040419) #19	HOXD12 (ENSRROG00000043268) #20	ENSRROG00000043226 #21	HOXD9 (ENSRROG00000032216) #23	HOXD10 (ENSRROG00000036162) #22	ENSRROG00000024611 #24	HOXD4 (ENSRROG00000026646) #25	HOXD3 (ENSRROG00000044509) #26	HOXD1 (ENSRROG00000035364) #28	ENSRROG00000038369	ENSRROG00000042876	ENSRROG00000020854	MTX2 (ENSRROG00000030249) #29	ENSRROG00000028794 ##31	NFE2L2 (ENSRROG00000045317) #32	AGPS (ENSRROG00000035068) #33	TTC30A (ENSRROG00000023478) #35	PDE11A (ENSRROG00000028809) #36	ENSRROG00000041594	RBM45 (ENSRROG00000031398)
Hominoidea	ANCESTRAL SPECIES	15	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00910000147400 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a ##31	ENSGT00910000147200 #30	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.jb #34	ENSGT00390000010116.kb #35	ENSGT00940000162151 #36
Hominidae	ANCESTRAL SPECIES	17	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00910000147400 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a ##31	ENSGT00910000147200 #30	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.jb #34	ENSGT00390000010116.kb #35	ENSGT00940000162151 #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00910000147400 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00910000147200 #30	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.jb #34	ENSGT00390000010116.kb #35	ENSGT00940000162151 #36	ENSGT00390000010991.f.b
Homo/Pan group	ANCESTRAL SPECIES	13	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00910000147400 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00910000147200 #30	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.jb #34	ENSGT00390000010116.kb #35	ENSGT00940000162151 #36	ENSGT00390000010991.f.b
Pan	ANCESTRAL SPECIES	12	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00910000147400 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00910000147200 #30	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.jb #34	ENSGT00390000010116.kb #35	ENSGT00940000162151 #36	ENSGT00390000010991.f.b
Bonobo	MODERN SPECIES	15	OLA1 (ENSPPAG00000035004)	CIR1 (ENSPPAG00000041485)	SCRN3 (ENSPPAG00000032328)	GPR155 (ENSPPAG00000032733) #7	ENSPPAG00000040473	WIPF1 (ENSPPAG00000037968) #9	CHRNA1 (ENSPPAG00000024985) #10	ENSPPAG00000023882 #12	ATF2 (ENSPPAG00000027656) #13	ATP5MC3 (ENSPPAG00000036512) #14	LNPK (ENSPPAG00000030440) #16	ENSPPAG00000039855 #18	ENSPPAG00000010483 #19	HOXD12 (ENSPPAG00000017089) #20	ENSPPAG00000028125 #21	HOXD10 (ENSPPAG00000036046) #22	HOXD9 (ENSPPAG00000039242) #23	ENSPPAG00000034189 #24	HOXD4 (ENSPPAG00000034992) #25	HOXD3 (ENSPPAG00000031713) #26	ENSPPAG00000013988 #27	ENSPPAG00000031665 #28	ENSPPAG00000025118	MTX2 (ENSPPAG00000043265) #29	ENSPPAG00000012679 #30	HNRNPA3 (ENSPPAG00000023768) ##31	NFE2L2 (ENSPPAG00000037501) #32	AGPS (ENSPPAG00000036868) #33	TTC30B (ENSPPAG00000019313) #34	TTC30A (ENSPPAG00000023829) #35	PDE11A (ENSPPAG00000036387) #36
Chimpanzee	MODERN SPECIES	15	OLA1 (ENSPTRG00000012650)	SP9 (ENSPTRG00000045805)	CIR1 (ENSPTRG00000012652)	SCRN3 (ENSPTRG00000012653)	GPR155 (ENSPTRG00000012655) #7	WIPF1 (ENSPTRG00000012656)	CHRNA1 (ENSPTRG00000012658) #10	CHN1 (ENSPTRG00000012659) #12	ATF2 (ENSPTRG00000012660) #13	ATP5MC3 (ENSPTRG00000047314) #14	LNPK (ENSPTRG00000012662) #16	EVX2 (ENSPTRG00000012663) #18	HOXD13 (ENSPTRG00000012664) #19	HOXD12 (ENSPTRG00000012665) #20	HOXD11 (ENSPTRG00000012666) #21	HOXD10 (ENSPTRG00000012667) #22	HOXD9 (ENSPTRG00000043464) #23	HOXD8 (ENSPTRG00000012669) #24	HOXD4 (ENSPTRG00000051862) #25	HOXD3 (ENSPTRG00000012672) #26	ENSPTRG00000051348 #27	HOXD1 (ENSPTRG00000052716) #28	ENSPTRG00000023851	MTX2 (ENSPTRG00000012674) #29	ENSPTRG00000042815 #30	HNRNPA3 (ENSPTRG00000012676) ##31	NFE2L2 (ENSPTRG00000012677) #32	AGPS (ENSPTRG00000012680) #33	TTC30B (ENSPTRG00000048299) #34	TTC30A (ENSPTRG00000044238) #35	PDE11A (ENSPTRG00000012684) #36
Human	MODERN SPECIES	11	OLA1 (ENSG00000138430)	SP9 (ENSG00000217236)	CIR1 (ENSG00000138433)	SCRN3 (ENSG00000144306)	GPR155 (ENSG00000163328) #7	WIPF1 (ENSG00000115935) #9	CHRNA1 (ENSG00000138435) #10	CHN1 (ENSG00000128656) #12	ATF2 (ENSG00000115966) #13	ATP5MC3 (ENSG00000154518) #14	LNPK (ENSG00000144320) #16	EVX2 (ENSG00000174279) #18	HOXD13 (ENSG00000128714) #19	HOXD12 (ENSG00000170178) #20	HOXD11 (ENSG00000128713) #21	HOXD10 (ENSG00000128710) #22	HOXD9 (ENSG00000128709) #23	HOXD8 (ENSG00000175879) #24	HOXD3 (ENSG00000128652) #26	HOXD4 (ENSG00000170166) #25	HOXD1 (ENSG00000128645) #28	MTX2 (ENSG00000128654) #29	HNRNPA3 (ENSG00000170144) ##31	NFE2L2 (ENSG00000116044) #32	AGPS (ENSG00000018510) #33	TTC30B (ENSG00000196659) #34	TTC30A (ENSG00000197557) #35	PDE11A (ENSG00000128655) #36	RBM45 (ENSG00000155636)	OSBPL6 (ENSG00000079156)	PRKRA (ENSG00000180228)
Gorilla	MODERN SPECIES	15	OLA1 (ENSGGOG00000022215)	SP9 (ENSGGOG00000007345)	SCRN3 (ENSGGOG00000034896)	GPR155 (ENSGGOG00000004876) #7	ENSGGOG00000005480	WIPF1 (ENSGGOG00000016773) #9	CHRNA1 (ENSGGOG00000008036) #10	CHN1 (ENSGGOG00000002177) #12	ATF2 (ENSGGOG00000027461) #13	ATP5MC3 (ENSGGOG00000036796) #14	LNPK (ENSGGOG00000007852) #16	EVX2 (ENSGGOG00000001335) #18	ENSGGOG00000041387 #19	ENSGGOG00000038035 #20	ENSGGOG00000044084	HOXD10 (ENSGGOG00000001341) #22	HOXD9 (ENSGGOG00000001343) #23	ENSGGOG00000009898 #24	HOXD4 (ENSGGOG00000042533) #25	HOXD3 (ENSGGOG00000037089) #26	ENSGGOG00000037792 #27	HOXD1 (ENSGGOG00000001348) #28	ENSGGOG00000041480	ENSGGOG00000040635 #20	ENSGGOG00000040237 #19	MTX2 (ENSGGOG00000044125) #29	ENSGGOG00000037084	ENSGGOG00000043877 #30	HNRNPA3 (ENSGGOG00000006130) ##31	NFE2L2 (ENSGGOG00000001231) #32	ENSGGOG00000037000
Orangutan	MODERN SPECIES	15	SP9 (ENSPPYG00000033437)	ENSPPYG00000012945	ENSPPYG00000012946	GPR155 (ENSPPYG00000012947) #7	WIPF1 (ENSPPYG00000012948) #9	CHRNA1 (ENSPPYG00000012949) #10	CHN1 (ENSPPYG00000012950) #12	ATF2 (ENSPPYG00000012951) #13	ENSPPYG00000041465	ATP5MC3 (ENSPPYG00000037033) #14	LNPK (ENSPPYG00000032630) #16	EVX2 (ENSPPYG00000012955) #18	HOXD13 (ENSPPYG00000012956) #19	HOXD12 (ENSPPYG00000012957) #20	HOXD11 (ENSPPYG00000031598) #21	HOXD10 (ENSPPYG00000012958) #22	HOXD9 (ENSPPYG00000012959) #23	HOXD8 (ENSPPYG00000037201) #24	HOXD4 (ENSPPYG00000034536) #25	HOXD3 (ENSPPYG00000012963) #26	HOXD1 (ENSPPYG00000012964) #28	ENSPPYG00000037565	MTX2 (ENSPPYG00000012966) #29	HNRNPA3 (ENSPPYG00000012967) ##31	NFE2L2 (ENSPPYG00000012968) #32	AGPS (ENSPPYG00000012969) #33	TTC30B (ENSPPYG00000034101) #34	TTC30A (ENSPPYG00000038583) #35	PDE11A (ENSPPYG00000012972) #36	RBM45 (ENSPPYG00000012974)	OSBPL6 (ENSPPYG00000012975)
Gibbon	MODERN SPECIES	14	ENSNLEG00000033171	ENSNLEG00000005869	SCRN3 (ENSNLEG00000005880)	GPR155 (ENSNLEG00000005896) #7	ENSNLEG00000033625	WIPF1 (ENSNLEG00000005907) #9	CHRNA1 (ENSNLEG00000005914) #10	CHN1 (ENSNLEG00000005923) #12	ENSNLEG00000028605	ATF2 (ENSNLEG00000005938) #13	ATP5MC3 (ENSNLEG00000005971) #14	LNPK (ENSNLEG00000005977) #16	EVX2 (ENSNLEG00000005999) #18	HOXD13 (ENSNLEG00000029303) #19	HOXD12 (ENSNLEG00000006006) #20	HOXD10 (ENSNLEG00000006010) #22	HOXD9 (ENSNLEG00000006011) #23	ENSNLEG00000006003 #24	HOXD4 (ENSNLEG00000006014) #25	HOXD3 (ENSNLEG00000006018) #26	ENSNLEG00000027160 #27	HOXD1 (ENSNLEG00000006019) #28	MTX2 (ENSNLEG00000006020) #29	ENSNLEG00000035565 #30	ENSNLEG00000029348	HNRNPA3 (ENSNLEG00000028401) ##31	NFE2L2 (ENSNLEG00000006029) #32	AGPS (ENSNLEG00000006030) #33	TTC30B (ENSNLEG00000033307) #34	TTC30A (ENSNLEG00000030979) #35	PDE11A (ENSNLEG00000006056) #36
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.lb #34	ENSGT00390000010116.mb #34	ENSGT00940000162151 #36	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Cebidae	ANCESTRAL SPECIES	11	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.lb #34	ENSGT00390000010116.mb #34	ENSGT00940000162151 #36	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Marmoset	MODERN SPECIES	18	SCRN3 (ENSCJAG00000007909)	GPR155 (ENSCJAG00000007947) #7	WIPF1 (ENSCJAG00000048519) #9	CHRNA1 (ENSCJAG00000008007) #10	CHN1 (ENSCJAG00000008041) #12	ATF2 (ENSCJAG00000008085) #13	ATP5MC3 (ENSCJAG00000008207) #14	ENSCJAG00000080703	ENSCJAG00000084464	ENSCJAG00000022954	LNPK (ENSCJAG00000008226) #16	EVX2 (ENSCJAG00000077487) #18	HOXD13 (ENSCJAG00000040882) #19	HOXD12 (ENSCJAG00000079626) #20	HOXD11 (ENSCJAG00000048503) #21	HOXD10 (ENSCJAG00000008269) #22	HOXD9 (ENSCJAG00000046789) #23	HOXD8 (ENSCJAG00000008284) #24	HOXD4 (ENSCJAG00000008286) #25	HOXD3 (ENSCJAG00000063715) #26	HOXD1 (ENSCJAG00000008290) #28	MTX2 (ENSCJAG00000039174) #29	ENSCJAG00000072603	ENSCJAG00000006928 ##31	NFE2L2 (ENSCJAG00000008340) #32	ENSCJAG00000059559	ENSCJAG00000021732 #34	AGPS (ENSCJAG00000021508) #33	ENSCJAG00000081808	ENSCJAG00000081742	PDE11A (ENSCJAG00000014554) #36
Cebidae_a	ANCESTRAL SPECIES	27	ENSGT00940000155099.a	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.lb #34	ENSGT00390000010116.mb #34	ENSGT00940000162151 #36	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Capuchin	MODERN SPECIES	110	CIR1 (ENSCCAG00000030492)	SCRN3 (ENSCCAG00000022566)	GPR155 (ENSCCAG00000032455) #7	WIPF1 (ENSCCAG00000012994) #9	CHRNA1 (ENSCCAG00000032209) #10	CHN1 (ENSCCAG00000027038) #12	ENSCCAG00000034541	ATF2 (ENSCCAG00000035902) #13	ENSCCAG00000020514 #14	ENSCCAG00000015947	LNPK (ENSCCAG00000022702) #16	EVX2 (ENSCCAG00000032502) #18	HOXD13 (ENSCCAG00000032945) #19	HOXD12 (ENSCCAG00000026325) #20	HOXD11 (ENSCCAG00000034968) #21	HOXD10 (ENSCCAG00000020764) #22	HOXD9 (ENSCCAG00000021007) #23	HOXD8 (ENSCCAG00000001172) #24	ENSCCAG00000035403 #25
Bolivian squirrel monkey	MODERN SPECIES	46	SP3 (ENSSBOG00000035329)	ENSSBOG00000002999	ENSSBOG00000020259 ##31	CIR1 (ENSSBOG00000028527)	SCRN3 (ENSSBOG00000033089)	GPR155 (ENSSBOG00000034957) #7	WIPF1 (ENSSBOG00000032169) #9	CHRNA1 (ENSSBOG00000035763) #10	CHN1 (ENSSBOG00000016307) #12	ATF2 (ENSSBOG00000025461) #13	ATP5MC3 (ENSSBOG00000022688) #14	LNPK (ENSSBOG00000023054) #16	EVX2 (ENSSBOG00000034364) #18	HOXD13 (ENSSBOG00000032579) #19	HOXD12 (ENSSBOG00000025723) #20	HOXD10 (ENSSBOG00000020553) #22	HOXD9 (ENSSBOG00000031095) #23	ENSSBOG00000029405 #24	HOXD4 (ENSSBOG00000031535) #25	HOXD3 (ENSSBOG00000031894) #26	HOXD1 (ENSSBOG00000030906) #28	MTX2 (ENSSBOG00000025795) #29	HNRNPA3 (ENSSBOG00000034307) ##31	NFE2L2 (ENSSBOG00000022740) #32	AGPS (ENSSBOG00000026720) #33	ENSSBOG00000019156 #34	ENSSBOG00000018055 #34	PDE11A (ENSSBOG00000026746) #36	RBM45 (ENSSBOG00000005469)	OSBPL6 (ENSSBOG00000020436)	ENSSBOG00000035006
Mas night monkey	MODERN SPECIES	1333						ENSANAG00000011341	ENSANAG00000037338 #13	ENSANAG00000033889 #14	ENSANAG00000023367	ENSANAG00000021797	LNPK (ENSANAG00000019161) #16	EVX2 (ENSANAG00000031929) #18	HOXD13 (ENSANAG00000029500) #19	HOXD12 (ENSANAG00000008919) #20	HOXD11 (ENSANAG00000029678) #21	HOXD10 (ENSANAG00000025381) #22	HOXD9 (ENSANAG00000024699) #23	HOXD8 (ENSANAG00000026980) #24	HOXD4 (ENSANAG00000028028) #25	HOXD3 (ENSANAG00000026428) #26	HOXD1 (ENSANAG00000019775) #28	ENSANAG00000031061	MTX2 (ENSANAG00000022501) #29	HNRNPA3 (ENSANAG00000002931) ##31	NFE2L2 (ENSANAG00000023669) #32	AGPS (ENSANAG00000019626) #33	ENSANAG00000003240 #34	ENSANAG00000025414 #36
Tarsier	MODERN SPECIES	1221												EVX2 (ENSTSYG00000003728) #18	HOXD13 (ENSTSYG00000003737) #19	HOXD12 (ENSTSYG00000003740) #20	ENSTSYG00000035865 #21	HOXD10 (ENSTSYG00000002769) #22
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT00390000000673.b.v.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Lemuriformes_a	ANCESTRAL SPECIES	69	ENSGT00390000000673.b.v.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Coquerels sifaka	MODERN SPECIES	478	SP9 (ENSPCOG00000018883)	CIR1 (ENSPCOG00000014298)	SCRN3 (ENSPCOG00000015456)	GPR155 (ENSPCOG00000014376) #7	ENSPCOG00000018466	ENSPCOG00000015733	CHRNA1 (ENSPCOG00000020642) #10	CHN1 (ENSPCOG00000018830) #12	ATF2 (ENSPCOG00000025416) #13	ATP5MC3 (ENSPCOG00000016374) #14	LNPK (ENSPCOG00000026983) #16	EVX2 (ENSPCOG00000022416) #18	HOXD13 (ENSPCOG00000018735) #19	HOXD12 (ENSPCOG00000022036) #20	HOXD11 (ENSPCOG00000015055) #21	HOXD10 (ENSPCOG00000023637) #22	HOXD9 (ENSPCOG00000026809) #23	HOXD8 (ENSPCOG00000024233) #24	HOXD4 (ENSPCOG00000018337) #25	HOXD3 (ENSPCOG00000017195) #26	HOXD1 (ENSPCOG00000024445) #28	MTX2 (ENSPCOG00000025077) #29	NFE2L2 (ENSPCOG00000007362) #32	AGPS (ENSPCOG00000018665) #33	PDE11A (ENSPCOG00000025830) #36	ENSPCOG00000025842	ENSPCOG00000028806	RBM45 (ENSPCOG00000021526)	ENSPCOG00000005659	OSBPL6 (ENSPCOG00000010731)	PRKRA (ENSPCOG00000018812)
Greater bamboo lemur	MODERN SPECIES	243	SP9 (ENSPSMG00000024136)	CIR1 (ENSPSMG00000024153)	SCRN3 (ENSPSMG00000024170)	GPR155 (ENSPSMG00000024199) #7	WIPF1 (ENSPSMG00000024219) #9	CHRNA1 (ENSPSMG00000024264) #10	CHN1 (ENSPSMG00000024301) #12	ATF2 (ENSPSMG00000024416) #13	ATP5MC3 (ENSPSMG00000024446) #14	LNPK (ENSPSMG00000024460) #16	ENSPSMG00000024465	EVX2 (ENSPSMG00000024469) #18	HOXD13 (ENSPSMG00000024474) #19	HOXD12 (ENSPSMG00000024476) #20	HOXD11 (ENSPSMG00000024479) #21	HOXD10 (ENSPSMG00000024482) #22	HOXD9 (ENSPSMG00000024487) #23	HOXD8 (ENSPSMG00000024501) #24	HOXD4 (ENSPSMG00000024504) #25	HOXD3 (ENSPSMG00000024507) #26	ENSPSMG00000024512	HOXD1 (ENSPSMG00000024516) #28	NNT (ENSPSMG00000024528)	PAIP1 (ENSPSMG00000024554)	ENSPSMG00000024563
Mouse lemur	MODERN SPECIES	30	SP9 (ENSMICG00000031506)	CIR1 (ENSMICG00000026886)	SCRN3 (ENSMICG00000000366)	GPR155 (ENSMICG00000000369) #7	ENSMICG00000031974	CHRNA1 (ENSMICG00000014284) #10	ENSMICG00000038672	CHN1 (ENSMICG00000014292) #12	ATF2 (ENSMICG00000006417) #13	ATP5MC3 (ENSMICG00000006421) #14	LNPK (ENSMICG00000027707) #16	EVX2 (ENSMICG00000035343) #18	HOXD13 (ENSMICG00000002170) #19	HOXD12 (ENSMICG00000002172) #20	HOXD11 (ENSMICG00000048033) #21	HOXD10 (ENSMICG00000028373) #22	HOXD9 (ENSMICG00000031229) #23	HOXD8 (ENSMICG00000004277) #24	HOXD4 (ENSMICG00000043209) #25	HOXD3 (ENSMICG00000004286) #26	HOXD1 (ENSMICG00000044650) #28	MTX2 (ENSMICG00000004295) #29	ENSMICG00000027841 ##31	NFE2L2 (ENSMICG00000009559) #32	AGPS (ENSMICG00000003750) #33	ENSMICG00000003768 #34	ENSMICG00000046051 #34	ENSMICG00000030225	PDE11A (ENSMICG00000003770) #36	ENSMICG00000047030	RBM45 (ENSMICG00000003787)
Bushbaby	MODERN SPECIES	163	CIR1 (ENSOGAG00000016564)	SCRN3 (ENSOGAG00000016569)	GPR155 (ENSOGAG00000016571) #7	WIPF1 (ENSOGAG00000016579) #9	CHRNA1 (ENSOGAG00000000890) #10	CHN1 (ENSOGAG00000000894) #12	ATF2 (ENSOGAG00000011373) #13	ATP5MC3 (ENSOGAG00000027578) #14	ENSOGAG00000026184	ENSOGAG00000030354	LNPK (ENSOGAG00000030372) #16	EVX2 (ENSOGAG00000025378) #18	HOXD13 (ENSOGAG00000027055) #19	HOXD12 (ENSOGAG00000015689) #20	HOXD11 (ENSOGAG00000029520) #21	HOXD10 (ENSOGAG00000015694) #22	HOXD9 (ENSOGAG00000015697) #23	HOXD8 (ENSOGAG00000015707) #24	HOXD4 (ENSOGAG00000029168) #25	HOXD3 (ENSOGAG00000015710) #26	HOXD1 (ENSOGAG00000015712) #28	MTX2 (ENSOGAG00000016422) #29	ENSOGAG00000032690	ENSOGAG00000028132 ##31	NFE2L2 (ENSOGAG00000034393) #32	AGPS (ENSOGAG00000013184) #33	ENSOGAG00000013189 #34	ENSOGAG00000013191	ENSOGAG00000026648	RBM45 (ENSOGAG00000015195)	OSBPL6 (ENSOGAG00000013765)
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Glires	ANCESTRAL SPECIES	14	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Rodentia	ANCESTRAL SPECIES	14	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a.xb #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Marmotini	ANCESTRAL SPECIES	2	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a.xb.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.gb #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Alpin marmot	MODERN SPECIES	5	CIR1 (ENSMMMG00000023697)	ENSMMMG00000023700	ENSMMMG00000023702	GPR155 (ENSMMMG00000023705) #7	ENSMMMG00000023714	WIPF1 (ENSMMMG00000023716) #9	CHRNA1 (ENSMMMG00000023717) #10	CHN1 (ENSMMMG00000023718) #12	ENSMMMG00000023730	ATF2 (ENSMMMG00000023733) #13	ENSMMMG00000023748 #14	LNPK (ENSMMMG00000023755) #16	HOXD13 (ENSMMMG00000023759) #19	HOXD12 (ENSMMMG00000023760) #20	ENSMMMG00000023762 #21	HOXD10 (ENSMMMG00000023763) #22	HOXD9 (ENSMMMG00000023764) #23	ENSMMMG00000023765 #24	HOXD4 (ENSMMMG00000023767) #25	HOXD3 (ENSMMMG00000023768) #26	MTX2 (ENSMMMG00000023772) #29	NFE2L2 (ENSMMMG00000023776) #32	AGPS (ENSMMMG00000023778) #33
Marmotini_b	ANCESTRAL SPECIES	10	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a.xb.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.gb #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Squirrel	MODERN SPECIES	109	ENSSTOG00000009026	SP3 (ENSSTOG00000023955)	OLA1 (ENSSTOG00000015547)	CIR1 (ENSSTOG00000001233)	SCRN3 (ENSSTOG00000001236)	GPR155 (ENSSTOG00000001239) #7	ENSSTOG00000004271 #9	CHRNA1 (ENSSTOG00000004281) #10	CHN1 (ENSSTOG00000004301) #12	ATF2 (ENSSTOG00000014079) #13	ENSSTOG00000013572 #14	LNPK (ENSSTOG00000014498) #16	EVX2 (ENSSTOG00000014512) #18	HOXD13 (ENSSTOG00000004117) #19	HOXD12 (ENSSTOG00000004918) #20	HOXD10 (ENSSTOG00000003935) #22	HOXD9 (ENSSTOG00000026761) #23	ENSSTOG00000023453 #24	HOXD4 (ENSSTOG00000029055) #25	HOXD3 (ENSSTOG00000014680) #26	HOXD1 (ENSSTOG00000012230) #28	MTX2 (ENSSTOG00000014688) #29	ENSSTOG00000030884	HNRNPA3 (ENSSTOG00000025125) ##31	NFE2L2 (ENSSTOG00000000313) #32	AGPS (ENSSTOG00000012623) #33	ENSSTOG00000003267 #34	PDE11A (ENSSTOG00000012639) #36	ENSSTOG00000008853	RBM45 (ENSSTOG00000002708)	OSBPL6 (ENSSTOG00000006092)
Arctic ground squirrel	MODERN SPECIES	323						WIPF1 (ENSUPAG00010020649) #9	CHRNA1 (ENSUPAG00010020641) #10	CHN1 (ENSUPAG00010020575) #12	ATF2 (ENSUPAG00010020491) #13	ENSUPAG00010020485 #14	LNPK (ENSUPAG00010020452) #16	EVX2 (ENSUPAG00010020442) #18	HOXD13 (ENSUPAG00010020441) #19	HOXD12 (ENSUPAG00010020440) #20	HOXD11 (ENSUPAG00010020439) #21	HOXD10 (ENSUPAG00010020434) #22	HOXD9 (ENSUPAG00010020431) #23	HOXD8 (ENSUPAG00010020425) #24	HOXD4 (ENSUPAG00010020416) #25	HOXD3 (ENSUPAG00010020410) #26	HOXD1 (ENSUPAG00010020407) #28	ENSUPAG00010020400	MTX2 (ENSUPAG00010020394) #29
Eurasian red squirrel	MODERN SPECIES	12	SP9 (ENSSVLG00005002657)	CIR1 (ENSSVLG00005002678)	SCRN3 (ENSSVLG00005002703)	GPR155 (ENSSVLG00005002750) #7	WIPF1 (ENSSVLG00005002786) #9	CHRNA1 (ENSSVLG00005002856) #10	CHN1 (ENSSVLG00005003041) #12	ENSSVLG00005003279 #13	ENSSVLG00005003430 #14	ENSSVLG00005003466	LNPK (ENSSVLG00005003500) #16	EVX2 (ENSSVLG00005003539) #18	HOXD13 (ENSSVLG00005003554) #19	HOXD12 (ENSSVLG00005003565) #20	HOXD11 (ENSSVLG00005003581) #21	HOXD10 (ENSSVLG00005003599) #22	HOXD9 (ENSSVLG00005003618) #23	HOXD8 (ENSSVLG00005003645) #24	HOXD4 (ENSSVLG00005003676) #25	HOXD1 (ENSSVLG00005003762) #28	MTX2 (ENSSVLG00005003812) #29	ENSSVLG00005003881 ##31	ENSSVLG00005003903 #32	AGPS (ENSSVLG00005003959) #33	ENSSVLG00005003996 #34	ENSSVLG00005004006 #34	ENSSVLG00005004018 #34	PDE11A (ENSSVLG00005004050) #36	ENSSVLG00005004113	RBM45 (ENSSVLG00005004137)	OSBPL6 (ENSSVLG00005004465)
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296.t #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296.t #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b
Hystricomorpha_b	ANCESTRAL SPECIES	24	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296.t #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b
Long-tailed chinchilla	MODERN SPECIES	110	FAM149A (ENSCLAG00000017064)	CYP4V2 (ENSCLAG00000016518)	KLKB1 (ENSCLAG00000016848)	F11 (ENSCLAG00000012318)	MTNR1A (ENSCLAG00000015269)	FAT1 (ENSCLAG00000013169)	ENSCLAG00000015923	ZFP42 (ENSCLAG00000011822)	TRIML2 (ENSCLAG00000011159)	TRIML1 (ENSCLAG00000014494)	LNPK (ENSCLAG00000015033) #16	EVX2 (ENSCLAG00000014389) #18	HOXD13 (ENSCLAG00000013095) #19	HOXD12 (ENSCLAG00000013058) #20	ENSCLAG00000012563 #21	HOXD10 (ENSCLAG00000012482) #22	HOXD9 (ENSCLAG00000012447) #23	ENSCLAG00000011108 #24	HOXD4 (ENSCLAG00000014461) #25	ENSCLAG00000013605 #26	HOXD1 (ENSCLAG00000012505) #28	MTX2 (ENSCLAG00000011598) #29	ENSCLAG00000011088	HNRNPA3 (ENSCLAG00000012855) ##31	NFE2L2 (ENSCLAG00000013122) #32	ENSCLAG00000012626	ENSCLAG00000013627	AGPS (ENSCLAG00000013279) #33	ENSCLAG00000017938 #34	ENSCLAG00000013714 #34	PDE11A (ENSCLAG00000013013) #36
Degu	MODERN SPECIES	106	GPR155 (ENSODEG00000009263) #7	ENSODEG00000008878 #9	ENSODEG00000008975 #9	ENSODEG00000019598	CHRNA1 (ENSODEG00000010458) #10	CHN1 (ENSODEG00000008560) #12	ATF2 (ENSODEG00000010947) #13	ENSODEG00000010951 #14	ENSODEG00000010385	LNPK (ENSODEG00000010046) #16	ENSODEG00000008992	EVX2 (ENSODEG00000010771) #18	HOXD13 (ENSODEG00000008793) #19	HOXD12 (ENSODEG00000008376) #20	ENSODEG00000010934 #21	HOXD10 (ENSODEG00000010382) #22	HOXD9 (ENSODEG00000008626) #23	ENSODEG00000010496 #24	HOXD4 (ENSODEG00000010297) #25	HOXD3 (ENSODEG00000009722) #26	HOXD1 (ENSODEG00000008961) #28	ENSODEG00000008879	MTX2 (ENSODEG00000008062) #29	ENSODEG00000009697	ENSODEG00000009265	NFE2L2 (ENSODEG00000010043) #32	AGPS (ENSODEG00000008272) #33	ENSODEG00000020058 #34	ENSODEG00000019592 #34	PDE11A (ENSODEG00000010682) #36	ENSODEG00000019574
Guinea pig	MODERN SPECIES	3	OLA1 (ENSCPOG00000031110)	SP9 (ENSCPOG00000032651)	CIR1 (ENSCPOG00000010275)	SCRN3 (ENSCPOG00000010281)	GPR155 (ENSCPOG00000010286) #7	ENSCPOG00000034131 #9	CHRNA1 (ENSCPOG00000000036) #10	ENSCPOG00000002789 #12	ATF2 (ENSCPOG00000004637) #13	ATP5MC3 (ENSCPOG00000040161) #14	LNPK (ENSCPOG00000010971) #16	EVX2 (ENSCPOG00000006711) #18	HOXD13 (ENSCPOG00000006722) #19	HOXD12 (ENSCPOG00000005496) #20	ENSCPOG00000019766 #21	HOXD10 (ENSCPOG00000011368) #22	HOXD9 (ENSCPOG00000015006) #23	HOXD8 (ENSCPOG00000015005) #24	HOXD4 (ENSCPOG00000036552) #25	HOXD3 (ENSCPOG00000034932) #26	HOXD1 (ENSCPOG00000005509) #28	MTX2 (ENSCPOG00000011099) #29	ENSCPOG00000027250	ENSCPOG00000004251 ##31	NFE2L2 (ENSCPOG00000031261) #32	AGPS (ENSCPOG00000000679) #33	ENSCPOG00000000681 #34	PDE11A (ENSCPOG00000000682) #36	RBM45 (ENSCPOG00000000684)	OSBPL6 (ENSCPOG00000002816)	ENSCPOG00000003900
Naked mole-rat female	MODERN SPECIES	22	SCRN3 (ENSHGLG00000010172)	GPR155 (ENSHGLG00000012529) #7	ENSHGLG00000036822 #9	ENSHGLG00000039411 #9	CHRNA1 (ENSHGLG00000015432) #10	ENSHGLG00000016114 #12	ENSHGLG00000018805 #13	Atp5mc3 (ENSHGLG00000033165) #14	ENSHGLG00000040802	LNPK (ENSHGLG00000004015) #16	EVX2 (ENSHGLG00000004218) #18	HOXD13 (ENSHGLG00000050884) #19	HOXD12 (ENSHGLG00000005403) #20	HOXD11 (ENSHGLG00000034527) #21	HOXD9 (ENSHGLG00000007185) #23	HOXD10 (ENSHGLG00000033462) #22	ENSHGLG00000003577 #24	HOXD4 (ENSHGLG00000037842) #25	HOXD3 (ENSHGLG00000003761) #26	HOXD1 (ENSHGLG00000004072) #28	MTX2 (ENSHGLG00000004177) #29	ENSHGLG00000012734	ENSHGLG00000046644	ENSHGLG00000036655	HNRNPA3 (ENSHGLG00000005451) ##31	NFE2L2 (ENSHGLG00000006475) #32	AGPS (ENSHGLG00000007541) #33	ENSHGLG00000036841 #34	TTC30B (ENSHGLG00000042840) #34	ENSHGLG00000005226 #36	ENSHGLG00000006609
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b.p ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Muroidea	ANCESTRAL SPECIES	34	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b.p ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.y.b #34	ENSGT00390000010116.y.a #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b.p ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.y.b #34	ENSGT00390000010116.y.a.a #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791
Cricetidae	ANCESTRAL SPECIES	12	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b.p ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.y.b #34	ENSGT00390000010116.y.a.a #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791
Cricetidae_B	ANCESTRAL SPECIES	7	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b.p ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.y.b #34	ENSGT00390000010116.y.a.a #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791
Prairie vole	MODERN SPECIES	12	ENSMOCG00000003125	Sp9 (ENSMOCG00000019136)	Cir1 (ENSMOCG00000017545)	Scrn3 (ENSMOCG00000018966)	Gpr155 (ENSMOCG00000003950) #7	ENSMOCG00000014660	Chrna1 (ENSMOCG00000020367) #10	Chn1 (ENSMOCG00000005574) #12	Atf2 (ENSMOCG00000015301) #13	ENSMOCG00000012786 #14	Lnpk (ENSMOCG00000022345) #16	Evx2 (ENSMOCG00000010466) #18	Hoxd13 (ENSMOCG00000014618) #19	Hoxd12 (ENSMOCG00000018953) #20	Hoxd11 (ENSMOCG00000019226) #21	Hoxd10 (ENSMOCG00000006052) #22	Hoxd9 (ENSMOCG00000005870) #23	Hoxd8 (ENSMOCG00000022746) #24	Hoxd3 (ENSMOCG00000022552) #26	Hoxd4 (ENSMOCG00000013646) #25	Hoxd1 (ENSMOCG00000014086) #28	Mtx2 (ENSMOCG00000017110) #29	ENSMOCG00000019409 ##31	Nfe2l2 (ENSMOCG00000020760) #32	Agps (ENSMOCG00000017476) #33	Ttc30b (ENSMOCG00000001580) #34	ENSMOCG00000001098	Ttc30a2 (ENSMOCG00000002802) #34	Pde11a (ENSMOCG00000005959) #36	Cyct (ENSMOCG00000021506)	Rbm45 (ENSMOCG00000017295)
Northern American deer mouse	MODERN SPECIES	17	Sp9 (ENSPEMG00000029035)	Cir1 (ENSPEMG00000022223)	Scrn3 (ENSPEMG00000022424)	Gpr155 (ENSPEMG00000022602) #7	Wipf1 (ENSPEMG00000013848) #9	Chrna1 (ENSPEMG00000012571) #10	Chn1 (ENSPEMG00000022535) #12	Atf2 (ENSPEMG00000021625) #13	Atp5g3 (ENSPEMG00000023766) #14	ENSPEMG00000008662	Lnpk (ENSPEMG00000017827) #16	Evx2 (ENSPEMG00000022145) #18	Hoxd13 (ENSPEMG00000022412) #19	Hoxd12 (ENSPEMG00000019240) #20	ENSPEMG00000018816 #21	Hoxd10 (ENSPEMG00000030445) #22	Hoxd9 (ENSPEMG00000006162) #23	ENSPEMG00000028623 #24	ENSPEMG00000029322	Hoxd4 (ENSPEMG00000024627) #25	Hoxd3 (ENSPEMG00000028862) #26	Hoxd1 (ENSPEMG00000021389) #28	Mtx2 (ENSPEMG00000022093) #29	Hnrnpa3 (ENSPEMG00000021885) ##31	Nfe2l2 (ENSPEMG00000023181) #32	Agps (ENSPEMG00000010561) #33	ENSPEMG00000023662	Ttc30b (ENSPEMG00000001902) #34	Ttc30a1 (ENSPEMG00000025624) #34	Pde11a (ENSPEMG00000021597) #36	Cyct (ENSPEMG00000028091)
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00940000171387	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000154808.a.a	ENSGT00940000153147.m.a.a.a.b.a.b.p ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.y.b #34	ENSGT00390000010116.y.a.a #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059
Golden Hamster	MODERN SPECIES	618	Sp9 (ENSMAUG00000020520)	ENSMAUG00000019383	Scrn3 (ENSMAUG00000020703)	Gpr155 (ENSMAUG00000019481) #7	ENSMAUG00000019796	Chrna1 (ENSMAUG00000017924) #10	Chn1 (ENSMAUG00000018455) #12	Atf2 (ENSMAUG00000018366) #13	Atp5g3 (ENSMAUG00000017685) #14	ENSMAUG00000020495	Lnpk (ENSMAUG00000018821) #16	Evx2 (ENSMAUG00000020383) #18	Hoxd13 (ENSMAUG00000017185) #19	Hoxd12 (ENSMAUG00000018416) #20	ENSMAUG00000020249 #21	Hoxd10 (ENSMAUG00000016731) #22	Hoxd9 (ENSMAUG00000018538) #23	Hoxd8 (ENSMAUG00000018092) #24	Hoxd4 (ENSMAUG00000018545) #25	Hoxd3 (ENSMAUG00000018318) #26	Hoxd1 (ENSMAUG00000018401) #28	Mtx2 (ENSMAUG00000017870) #29	ENSMAUG00000017462	Nfe2l2 (ENSMAUG00000017700) #32	Agps (ENSMAUG00000017317) #33	Pde11a (ENSMAUG00000021257) #36	Cyct (ENSMAUG00000016722)	Rbm45 (ENSMAUG00000016948)	Osbpl6 (ENSMAUG00000018609)	Prkra (ENSMAUG00000019631)	Pjvk (ENSMAUG00000018018)
Chinese hamster chok1gshd	MODERN SPECIES	188	Cir1 (ENSCGRG00001015518)	Scrn3 (ENSCGRG00001014709)	Gpr155 (ENSCGRG00001014219) #7	ENSCGRG00001021853	Chrna1 (ENSCGRG00001020291) #10	ENSCGRG00001019803	Chn1 (ENSCGRG00001019152) #12	Atf2 (ENSCGRG00001015584) #13	Atp5g3 (ENSCGRG00001012041) #14	Lnpk (ENSCGRG00001011515) #16	ENSCGRG00001006802	Evx2 (ENSCGRG00001003649) #18	Hoxd13 (ENSCGRG00001001661) #19	Hoxd12 (ENSCGRG00001000877) #20	Hoxd11 (ENSCGRG00001010386) #21	Hoxd10 (ENSCGRG00001008302) #22	Hoxd9 (ENSCGRG00001005991) #23	Hoxd8 (ENSCGRG00001013130) #24	Hoxd4 (ENSCGRG00001012360) #25	Hoxd3 (ENSCGRG00001011863) #26	Hoxd1 (ENSCGRG00001011572) #28	ENSCGRG00001014512	Mtx2 (ENSCGRG00001014247) #29	ENSCGRG00001003235	ENSCGRG00001008592 ##31	Nfe2l2 (ENSCGRG00001005715) #32	Agps (ENSCGRG00001003863) #33	Ttc30b (ENSCGRG00001002157) #34	Ttc30a1 (ENSCGRG00001000892) #34	ENSCGRG00001003072	Pde11a (ENSCGRG00001011422) #36
Murinae	ANCESTRAL SPECIES	1	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.y.b #34	ENSGT00390000010116.y.a.b #34	ENSGT00390000010116.y.a.a #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059
Mus	ANCESTRAL SPECIES	1	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a ##31	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.y.b #34	ENSGT00390000010116.y.a.b #34	ENSGT00390000010116.y.a.a #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a
Mus_A	ANCESTRAL SPECIES		ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a ##31	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.y.b #34	ENSGT00390000010116.y.a.b #34	ENSGT00390000010116.y.a.a #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a
Ryukyu mouse	MODERN SPECIES	11	Ola1 (MGP_CAROLIEiJ_G0023655)	Sp9 (MGP_CAROLIEiJ_G0023656)	Cir1 (MGP_CAROLIEiJ_G0023657)	Scrn3 (MGP_CAROLIEiJ_G0023658)	Gpr155 (MGP_CAROLIEiJ_G0023659) #7	Wipf1 (MGP_CAROLIEiJ_G0023660) #9	Chrna1 (MGP_CAROLIEiJ_G0023661) #10	Chn1 (MGP_CAROLIEiJ_G0023662) #12	Atf2 (MGP_CAROLIEiJ_G0023663) #13	Atp5g3 (MGP_CAROLIEiJ_G0023664) #14	Lnpk (MGP_CAROLIEiJ_G0023665) #16	Evx2 (MGP_CAROLIEiJ_G0023666) #18	Hoxd13 (MGP_CAROLIEiJ_G0023667) #19	Hoxd12 (MGP_CAROLIEiJ_G0023668) #20	Hoxd11 (MGP_CAROLIEiJ_G0023669) #21	Hoxd10 (MGP_CAROLIEiJ_G0023670) #22	Hoxd9 (MGP_CAROLIEiJ_G0023671) #23	Hoxd8 (MGP_CAROLIEiJ_G0023672) #24	Hoxd3 (MGP_CAROLIEiJ_G0023673) #26	Hoxd4 (MGP_CAROLIEiJ_G0023674) #25	MGP_CAROLIEiJ_G0023675 #25	Hoxd1 (MGP_CAROLIEiJ_G0023676) #28	Mtx2 (MGP_CAROLIEiJ_G0023677) #29	MGP_CAROLIEiJ_G0023678 ##31	Nfe2l2 (MGP_CAROLIEiJ_G0023679) #32	Agps (MGP_CAROLIEiJ_G0023680) #33	MGP_CAROLIEiJ_G0023681 #34	MGP_CAROLIEiJ_G0023682 #34	Pde11a (MGP_CAROLIEiJ_G0023683) #36	MGP_CAROLIEiJ_G0023684	Cyct (MGP_CAROLIEiJ_G0023685)
Mus_B	ANCESTRAL SPECIES	1	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.y.b #34	ENSGT00390000010116.y.a.b #34	ENSGT00390000010116.y.a.a #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059
Mouse	MODERN SPECIES	11	Ola1 (ENSMUSG00000027108)	Sp9 (ENSMUSG00000068859)	Cir1 (ENSMUSG00000041777)	Scrn3 (ENSMUSG00000008226)	Gpr155 (ENSMUSG00000041762) #7	Wipf1 (ENSMUSG00000075284) #9	Chrna1 (ENSMUSG00000027107) #10	Chn1 (ENSMUSG00000056486) #12	Atf2 (ENSMUSG00000027104) #13	Atp5g3 (ENSMUSG00000018770) #14	Lnpk (ENSMUSG00000009207) #16	Evx2 (ENSMUSG00000001815) #18	Hoxd13 (ENSMUSG00000001819) #19	Hoxd12 (ENSMUSG00000001823) #20	Hoxd11 (ENSMUSG00000042499) #21	Hoxd10 (ENSMUSG00000050368) #22	Hoxd9 (ENSMUSG00000043342) #23	Hoxd8 (ENSMUSG00000027102) #24	Hoxd3 (ENSMUSG00000079277) #26	Hoxd4 (ENSMUSG00000101174) #25	Hoxd1 (ENSMUSG00000042448) #28	Mtx2 (ENSMUSG00000027099) #29	Hnrnpa3 (ENSMUSG00000059005) ##31	Nfe2l2 (ENSMUSG00000015839) #32	Agps (ENSMUSG00000042410) #33	Ttc30b (ENSMUSG00000075273) #34	Ttc30a2 (ENSMUSG00000075272) #34	Ttc30a1 (ENSMUSG00000075271) #34	Pde11a (ENSMUSG00000075270) #36	Cyct (ENSMUSG00000056436)	Rbm45 (ENSMUSG00000042369)
Mus_C	ANCESTRAL SPECIES		ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.b ##31	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.y.b #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791
spretus	MODERN SPECIES	11	Ola1 (MGP_SPRETEiJ_G0024578)	Sp9 (MGP_SPRETEiJ_G0024579)	Cir1 (MGP_SPRETEiJ_G0024580)	Scrn3 (MGP_SPRETEiJ_G0024581)	Gpr155 (MGP_SPRETEiJ_G0024582) #7	Wipf1 (MGP_SPRETEiJ_G0024583) #9	Chrna1 (MGP_SPRETEiJ_G0024584) #10	Chn1 (MGP_SPRETEiJ_G0024585) #12	Atf2 (MGP_SPRETEiJ_G0024586) #13	Atp5g3 (MGP_SPRETEiJ_G0024587) #14	Lnpk (MGP_SPRETEiJ_G0024588) #16	Evx2 (MGP_SPRETEiJ_G0024589) #18	Hoxd13 (MGP_SPRETEiJ_G0024590) #19	Hoxd12 (MGP_SPRETEiJ_G0024591) #20	Hoxd11 (MGP_SPRETEiJ_G0024592) #21	Hoxd10 (MGP_SPRETEiJ_G0024593) #22	Hoxd9 (MGP_SPRETEiJ_G0024594) #23	Hoxd8 (MGP_SPRETEiJ_G0024595) #24	Hoxd3 (MGP_SPRETEiJ_G0024596) #26	Hoxd4 (MGP_SPRETEiJ_G0024597) #25	MGP_SPRETEiJ_G0024598 #25	Hoxd1 (MGP_SPRETEiJ_G0024599) #28	Mtx2 (MGP_SPRETEiJ_G0024600) #29	MGP_SPRETEiJ_G0024601 ##31	Nfe2l2 (MGP_SPRETEiJ_G0024602) #32	Agps (MGP_SPRETEiJ_G0024603) #33	MGP_SPRETEiJ_G0024604 #34	Pde11a (MGP_SPRETEiJ_G0024605) #36	Cyct (MGP_SPRETEiJ_G0024606)	Rbm45 (MGP_SPRETEiJ_G0024607)	Osbpl6 (MGP_SPRETEiJ_G0024608)
Steppe mouse	MODERN SPECIES	3326	Cir1 (ENSMSIG00000007130)	Scrn3 (ENSMSIG00000007111)	Gpr155 (ENSMSIG00000006975) #7	Wipf1 (ENSMSIG00000006899) #9	Chrna1 (ENSMSIG00000006852) #10	Chn1 (ENSMSIG00000006692) #12	ENSMSIG00000006659	Atf2 (ENSMSIG00000006546) #13	Atp5g3 (ENSMSIG00000006512) #14	ENSMSIG00000006495	Lnpk (ENSMSIG00000006386) #16	Evx2 (ENSMSIG00000006361) #18	Hoxd13 (ENSMSIG00000006348) #19	Hoxd12 (ENSMSIG00000006333) #20	Hoxd11 (ENSMSIG00000006326) #21	Hoxd10 (ENSMSIG00000006313) #22	Hoxd9 (ENSMSIG00000006304) #23	Hoxd8 (ENSMSIG00000006283) #24	ENSMSIG00000006186 #25	Hoxd3 (ENSMSIG00000006158) #26	Hoxd1 (ENSMSIG00000006137) #28	Mtx2 (ENSMSIG00000006053) #29	ENSMSIG00000006005 ##17	ENSMSIG00000005981	ENSMSIG00000005709 ##31	Nfe2l2 (ENSMSIG00000005673) #32
Shrew mouse	MODERN SPECIES	16	Ola1 (MGP_PahariEiJ_G0025107)	Sp9 (MGP_PahariEiJ_G0025108)	MGP_PahariEiJ_G0025109	Scrn3 (MGP_PahariEiJ_G0025110)	Gpr155 (MGP_PahariEiJ_G0025111) #7	Wipf1 (MGP_PahariEiJ_G0025112) #9	Chrna1 (MGP_PahariEiJ_G0025113) #10	MGP_PahariEiJ_G0025114 #12	Atf2 (MGP_PahariEiJ_G0025115) #13	Atp5g3 (MGP_PahariEiJ_G0025116) #14	Lnpk (MGP_PahariEiJ_G0025117) #16	Evx2 (MGP_PahariEiJ_G0025118) #18	Hoxd13 (MGP_PahariEiJ_G0025119) #19	Hoxd12 (MGP_PahariEiJ_G0025120) #20	Hoxd11 (MGP_PahariEiJ_G0025121) #21	Hoxd10 (MGP_PahariEiJ_G0025122) #22	Hoxd9 (MGP_PahariEiJ_G0025123) #23	Hoxd8 (MGP_PahariEiJ_G0025124) #24	Hoxd3 (MGP_PahariEiJ_G0025125) #26	Hoxd4 (MGP_PahariEiJ_G0025126) #25	MGP_PahariEiJ_G0025127 #25	Hoxd1 (MGP_PahariEiJ_G0025128) #28	Mtx2 (MGP_PahariEiJ_G0025129) #29	Hnrnpa3 (MGP_PahariEiJ_G0025130) ##31	Nfe2l2 (MGP_PahariEiJ_G0025131) #32	MGP_PahariEiJ_G0025132 #33	MGP_PahariEiJ_G0025133 #34	MGP_PahariEiJ_G0025134 #34	Pde11a (MGP_PahariEiJ_G0025135) #36	Cyct (MGP_PahariEiJ_G0025136)	Rbm45 (MGP_PahariEiJ_G0025137)
Rat	MODERN SPECIES	13	Cir1 (ENSRNOG00000018719)	Scrn3 (ENSRNOG00000018657)	Gpr155 (ENSRNOG00000018485) #7	Wipf1 (ENSRNOG00000018406) #9	Rbx1-ps2 (ENSRNOG00000067031)	Chrna1 (ENSRNOG00000018286) #10	Chn1 (ENSRNOG00000017939) #12	ENSRNOG00000068403	Atf2 (ENSRNOG00000001597) #13	Atp5mc3 (ENSRNOG00000001596) #14	Lnpk (ENSRNOG00000001593) #16	Evx2 (ENSRNOG00000001589) #18	Hoxd13 (ENSRNOG00000001588) #19	Hoxd12 (ENSRNOG00000001587) #20	Hoxd11 (ENSRNOG00000069591) #21	Hoxd10 (ENSRNOG00000001581) #22	Hoxd9 (ENSRNOG00000001580) #23	Hoxd8 (ENSRNOG00000071108) #24	Hoxd4 (ENSRNOG00000001578) #25	AABR07052559.1 (ENSRNOG00000053144)	Hoxd3 (ENSRNOG00000001577) #26	Hoxd1 (ENSRNOG00000001572) #28	Mtx2 (ENSRNOG00000001559) #29	Hnrnpa3 (ENSRNOG00000052968) ##31	Nfe2l2 (ENSRNOG00000001548) #32	ENSRNOG00000066660	Agps (ENSRNOG00000001547) #33	Ttc30b (ENSRNOG00000059460) #34	Ttc30a1 (ENSRNOG00000052519) #34	Ttc30a (ENSRNOG00000069321) #34	Cyct (ENSRNOG00000024457) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1735	Ola1 (ENSNGAG00000017639)	Sp9 (ENSNGAG00000002858)	Cir1 (ENSNGAG00000023091)	Scrn3 (ENSNGAG00000008783)	Gpr155 (ENSNGAG00000019246) #7	ENSNGAG00000022478 #9	Chrna1 (ENSNGAG00000023534) #10	Chn1 (ENSNGAG00000021893) #12	Atf2 (ENSNGAG00000003870) #13	Atp5g3 (ENSNGAG00000004748) #14	Lnpk (ENSNGAG00000023466) #16	Evx2 (ENSNGAG00000023877) #18	Hoxd13 (ENSNGAG00000023727) #19	Hoxd12 (ENSNGAG00000023455) #20	Hoxd11 (ENSNGAG00000023438) #21	Hoxd10 (ENSNGAG00000023868) #22	Hoxd9 (ENSNGAG00000011105) #23	Hoxd8 (ENSNGAG00000011799) #24	Hoxd4 (ENSNGAG00000020270) #25	Hoxd3 (ENSNGAG00000021055) #26	Hoxd1 (ENSNGAG00000021714) #28	Mtx2 (ENSNGAG00000020555) #29	ENSNGAG00000021745 #31	Nfe2l2 (ENSNGAG00000022809) #32	Agps (ENSNGAG00000020263) #33	ENSNGAG00000022555 #34	Pde11a (ENSNGAG00000023493) #36	Cyct (ENSNGAG00000023547)	ENSNGAG00000021016	Rbm45 (ENSNGAG00000023886)	Osbpl6 (ENSNGAG00000014527)
Lesser Egyptian jerboa	MODERN SPECIES	75	ENSJJAG00000022958	Sp9 (ENSJJAG00000020056)	Cir1 (ENSJJAG00000010849)	Scrn3 (ENSJJAG00000021027)	Chrna1 (ENSJJAG00000018710) #10	ENSJJAG00000014124	Chn1 (ENSJJAG00000015001) #12	Atf2 (ENSJJAG00000015836) #13	Atp5g3 (ENSJJAG00000022403) #14	ENSJJAG00000013766	Lnpk (ENSJJAG00000011710) #16	Evx2 (ENSJJAG00000017484) #18	Hoxd13 (ENSJJAG00000016388) #19	Hoxd12 (ENSJJAG00000016261) #20	Hoxd11 (ENSJJAG00000012344) #21	Hoxd10 (ENSJJAG00000011932) #22	Hoxd1 (ENSJJAG00000019059) #28	ENSJJAG00000019952	ENSJJAG00000013228 #29	ENSJJAG00000000149 ##31	Nfe2l2 (ENSJJAG00000019899) #32	Agps (ENSJJAG00000016720) #33	ENSJJAG00000014867 #34	ENSJJAG00000012087 #34	Pde11a (ENSJJAG00000018583) #36	Rbm45 (ENSJJAG00000001312)	Osbpl6 (ENSJJAG00000017863)	Prkra (ENSJJAG00000013031)	Pjvk (ENSJJAG00000012900)	Fkbp7 (ENSJJAG00000012221)	Plekha3 (ENSJJAG00000021299)
Kangaroo rat	MODERN SPECIES	324	Sp3 (ENSDORG00000009045)	ENSDORG00000008681	Sp9 (ENSDORG00000025534)	Cir1 (ENSDORG00000013676)	ENSDORG00000013682	Gpr155 (ENSDORG00000013683) #7	ENSDORG00000027952 #9	Chrna1 (ENSDORG00000001136) #10	Chn1 (ENSDORG00000002182) #12	Atf2 (ENSDORG00000024409) #13	Atp5g3 (ENSDORG00000012973) #14	Lnpk (ENSDORG00000015736) #16	Evx2 (ENSDORG00000009432) #18	Hoxd12 (ENSDORG00000009434) #20	ENSDORG00000029219 #21	Hoxd10 (ENSDORG00000009436) #22	ENSDORG00000027655 #24	Hoxd4 (ENSDORG00000028681) #25	Hoxd3 (ENSDORG00000029389) #26	Hoxd1 (ENSDORG00000009445) #28	Mtx2 (ENSDORG00000003848) #29	Hnrnpa3 (ENSDORG00000011155) ##31	Nfe2l2 (ENSDORG00000030173) #32	Agps (ENSDORG00000006480) #33	ENSDORG00000028567 #34	ENSDORG00000028697 #34	ENSDORG00000023150 #34	Cyct (ENSDORG00000004101)	Rbm45 (ENSDORG00000015831)	Osbpl6 (ENSDORG00000001912)	Prkra (ENSDORG00000013338)
Lagomorpha	ANCESTRAL SPECIES	12	ENSGT00940000155436	ENSGT00940000155099	ENSGT00390000000673.b	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000164264	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791
Rabbit	MODERN SPECIES	18	ENSOCUG00000037146	CIR1 (ENSOCUG00000029298)	SCRN3 (ENSOCUG00000011499)	GPR155 (ENSOCUG00000003683) #7	ENSOCUG00000036607	ENSOCUG00000005696	CHRNA1 (ENSOCUG00000024814) #10	CHN1 (ENSOCUG00000008134) #12	ATF2 (ENSOCUG00000012156) #13	ATP5MC3 (ENSOCUG00000012164) #14	LNPK (ENSOCUG00000008962) #16	EVX2 (ENSOCUG00000032776) #18	HOXD13 (ENSOCUG00000029547) #19	HOXD12 (ENSOCUG00000002412) #20	HOXD11 (ENSOCUG00000013942) #21	HOXD10 (ENSOCUG00000008964) #22	HOXD9 (ENSOCUG00000023956) #23	ENSOCUG00000035940 #24	HOXD4 (ENSOCUG00000002413) #25	HOXD3 (ENSOCUG00000014119) #26	HOXD1 (ENSOCUG00000015582) #28	MTX2 (ENSOCUG00000008760) #29	ENSOCUG00000025666	ENSOCUG00000030456	ENSOCUG00000002743 ##31	NFE2L2 (ENSOCUG00000001009) #32	AGPS (ENSOCUG00000011521) #33	ENSOCUG00000029884 #34	ENSOCUG00000039012 #34	ENSOCUG00000008038	ENSOCUG00000039559
Pika	MODERN SPECIES	959															ENSOPRG00000004018 #21	HOXD10 (ENSOPRG00000004038) #22	ENSOPRG00000004049 #23	HOXD8 (ENSOPRG00000004065) #24	ENSOPRG00000004081 #25	HOXD3 (ENSOPRG00000004098) #26	ENSOPRG00000004116 #28
Tree shrew	MODERN SPECIES	3966														EVX2 (ENSTBEG00000010517) #18	HOXD12 (ENSTBEG00000010799) #20	HOXD10 (ENSTBEG00000010925) #22	HOXD9 (ENSTBEG00000010979) #23	HOXD8 (ENSTBEG00000011462) #24	ENSTBEG00000011786 #28
Laurasiatheria	ANCESTRAL SPECIES	12	ENSGT00940000162304	ENSGT00570000080031	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Eulipotyphla	ANCESTRAL SPECIES	669															ENSGT00940000161025 #18	ENSGT00940000158266 #22	ENSGT00940000161503 #23
Hedgehog	MODERN SPECIES	2657																HOXD10 (ENSEEUG00000003440) #22	HOXD9 (ENSEEUG00000003473) #23
Common shrew	MODERN SPECIES	5414															EVX2 (ENSSARG00000007685) #18	HOXD10 (ENSSARG00000007696) #22
Laurasiatheria_a	ANCESTRAL SPECIES	16	ENSGT00940000162304	ENSGT00570000080031	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Laurasiatheria_b	ANCESTRAL SPECIES	16	ENSGT00940000162304	ENSGT00570000080031	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Carnivora	ANCESTRAL SPECIES	17	ENSGT00570000080031	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000147479.a.b	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Felidae	ANCESTRAL SPECIES	15	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000147479.a.b	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.vb #34	ENSGT00390000010116.wb #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791
Panthera	ANCESTRAL SPECIES	9	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000147479.a.b	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.vb #34	ENSGT00390000010116.wb #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791
Panthera_a	ANCESTRAL SPECIES	6	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000147479.a.b	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.vb #34	ENSGT00390000010116.wb #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791
leopard	MODERN SPECIES	1	SP9 (ENSPPRG00000003658)	CIR1 (ENSPPRG00000003553)	SCRN3 (ENSPPRG00000003477)	GPR155 (ENSPPRG00000003324) #7	ENSPPRG00000002818	WIPF1 (ENSPPRG00000002779) #9	CHRNA1 (ENSPPRG00000002357) #10	CHN1 (ENSPPRG00000001854) #12	ATF2 (ENSPPRG00000001271) #13	ATP5MC3 (ENSPPRG00000000490) #14	LNPK (ENSPPRG00000000436) #16	EVX2 (ENSPPRG00000000389) #18	HOXD13 (ENSPPRG00000000349) #19	HOXD12 (ENSPPRG00000000300) #20	HOXD11 (ENSPPRG00000000168) #21	HOXD10 (ENSPPRG00000000139) #22	HOXD9 (ENSPPRG00000000084) #23	HOXD8 (ENSPPRG00000022672) #24	HOXD4 (ENSPPRG00000022845) #25	HOXD3 (ENSPPRG00000022847) #26	HOXD1 (ENSPPRG00000023009) #28	MTX2 (ENSPPRG00000022475) #29	ENSPPRG00000022322 ##31	NFE2L2 (ENSPPRG00000020872) #32	AGPS (ENSPPRG00000020328) #33	ENSPPRG00000021116 #34	ENSPPRG00000021101 #34	PDE11A (ENSPPRG00000019135) #36	ENSPPRG00000017216	RBM45 (ENSPPRG00000017073)	OSBPL6 (ENSPPRG00000015447)
lion	MODERN SPECIES	8	CIR1 (ENSPLOG00000022436)	SCRN3 (ENSPLOG00000022426)	GPR155 (ENSPLOG00000022420) #7	ENSPLOG00000022404	ENSPLOG00000022399	WIPF1 (ENSPLOG00000022385) #9	CHRNA1 (ENSPLOG00000022353) #10	CHN1 (ENSPLOG00000022311) #12	ATF2 (ENSPLOG00000022276) #13	ATP5MC3 (ENSPLOG00000022249) #14	LNPK (ENSPLOG00000022229) #16	EVX2 (ENSPLOG00000022219) #18	HOXD13 (ENSPLOG00000022213) #19	HOXD12 (ENSPLOG00000022207) #20	HOXD11 (ENSPLOG00000022202) #21	HOXD10 (ENSPLOG00000022198) #22	HOXD9 (ENSPLOG00000022195) #23	HOXD8 (ENSPLOG00000022192) #24	HOXD4 (ENSPLOG00000022180) #25	HOXD3 (ENSPLOG00000022176) #26	HOXD1 (ENSPLOG00000022171) #28	MTX2 (ENSPLOG00000022148) #29	ENSPLOG00000022134 ##31	NFE2L2 (ENSPLOG00000022123) #32	AGPS (ENSPLOG00000022055) #33	ENSPLOG00000022046 #34	ENSPLOG00000022045 #34	PDE11A (ENSPLOG00000022012) #36	RBM45 (ENSPLOG00000021986)	OSBPL6 (ENSPLOG00000021601)	PRKRA (ENSPLOG00000021458)
Tiger	MODERN SPECIES	43	ENSPTIG00000019347	CDCA7 (ENSPTIG00000016039)	SP3 (ENSPTIG00000014294)	ENSPTIG00000011872	ENSPTIG00000009967	CIR1 (ENSPTIG00000008708)	SCRN3 (ENSPTIG00000003437)	GPR155 (ENSPTIG00000018965) #7	WIPF1 (ENSPTIG00000016801) #9	CHRNA1 (ENSPTIG00000012090) #10	CHN1 (ENSPTIG00000006887) #12	ATF2 (ENSPTIG00000017517) #13	ATP5MC3 (ENSPTIG00000016881) #14	LNPK (ENSPTIG00000016532) #16	HOXD13 (ENSPTIG00000016212) #19	HOXD10 (ENSPTIG00000015771) #22	ENSPTIG00000006835 #23	ENSPTIG00000015581 #24	HOXD4 (ENSPTIG00000015199) #25	ENSPTIG00000013485	MTX2 (ENSPTIG00000011503) #29	HNRNPA3 (ENSPTIG00000008598) ##31	NFE2L2 (ENSPTIG00000007874) #32
Cat	MODERN SPECIES	239	SP9 (ENSFCAG00000044908)	CIR1 (ENSFCAG00000022845)	SCRN3 (ENSFCAG00000022042)	GPR155 (ENSFCAG00000000439) #7	ENSFCAG00000034843	WIPF1 (ENSFCAG00000014400) #9	CHRNA1 (ENSFCAG00000014103) #10	CHN1 (ENSFCAG00000039893) #12	ATF2 (ENSFCAG00000027595) #13	ATP5MC3 (ENSFCAG00000012719) #14	LNPK (ENSFCAG00000033171) #16	EVX2 (ENSFCAG00000023892) #18	HOXD13 (ENSFCAG00000030694) #19	HOXD12 (ENSFCAG00000044671) #20	HOXD11 (ENSFCAG00000030594) #21	HOXD10 (ENSFCAG00000006264) #22	HOXD9 (ENSFCAG00000035038) #23	HOXD8 (ENSFCAG00000034788) #24	HOXD4 (ENSFCAG00000045772) #25	HOXD3 (ENSFCAG00000022371) #26	HOXD1 (ENSFCAG00000042171) #28	MTX2 (ENSFCAG00000030099) #29	HNRNPA3 (ENSFCAG00000012146) ##31	NFE2L2 (ENSFCAG00000012147) #32	AGPS (ENSFCAG00000022316) #33	ENSFCAG00000048732 #34	ENSFCAG00000049217 #34	PDE11A (ENSFCAG00000022207) #36	RBM45 (ENSFCAG00000018793)	OSBPL6 (ENSFCAG00000012535)	PRKRA (ENSFCAG00000031042)
Caniformia	ANCESTRAL SPECIES	14	ENSGT00570000080031	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000147479.a.b	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Canidae	ANCESTRAL SPECIES	45	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000147479.a.b.b	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a.g.b #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a.i #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.tb #34	ENSGT00390000010116.ub #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791
Canis_lupus	ANCESTRAL SPECIES	39	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000147479.a.b.b	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a.g.b #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a.i #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.tb #34	ENSGT00390000010116.ub #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791
Dingo	MODERN SPECIES	339	ENSCAFG00020006068	WIPF1 (ENSCAFG00020006074) #9	ENSCAFG00020006077 #9	CHRNA1 (ENSCAFG00020006081) #10	ENSCAFG00020006110 #12	ENSCAFG00020006118 #12	ATF2 (ENSCAFG00020006131) #13	ENSCAFG00020006151 #14	ENSCAFG00020006176	LNPK (ENSCAFG00020006192) #16	EVX2 (ENSCAFG00020006206) #18	HOXD13 (ENSCAFG00020006212) #19	HOXD12 (ENSCAFG00020006216) #20	HOXD9 (ENSCAFG00020006227) #23	HOXD11 (ENSCAFG00020006229) #21	HOXD10 (ENSCAFG00020006239) #22	HOXD8 (ENSCAFG00020006244) #24	HOXD4 (ENSCAFG00020006256) #25	HOXD3 (ENSCAFG00020006263) #26	HOXD1 (ENSCAFG00020006270) #28	MTX2 (ENSCAFG00020006273) #29	ENSCAFG00020006299 #31	NFE2L2 (ENSCAFG00020006313) #32	AGPS (ENSCAFG00020006351) #33	ENSCAFG00020006961 #34	ENSCAFG00020006963 #34	PDE11A (ENSCAFG00020006966) #36	RBM45 (ENSCAFG00020007013)	OSBPL6 (ENSCAFG00020007025)	ENSCAFG00020007071	PJVK (ENSCAFG00020007088)
Dog	MODERN SPECIES	29	SCRN3 (ENSCAFG00845015754)	GPR155 (ENSCAFG00845015821) #7	ENSCAFG00845015883	WIPF1 (ENSCAFG00845016036) #9	CHRNA1 (ENSCAFG00845016336) #10	CHN1 (ENSCAFG00845017147) #12	ATF2 (ENSCAFG00845017708) #13	ATP5MC3 (ENSCAFG00845018248) #14	ENSCAFG00845018368	LNPK (ENSCAFG00845018510) #16	EVX2 (ENSCAFG00845018704) #18	HOXD13 (ENSCAFG00845018741) #19	HOXD12 (ENSCAFG00845018775) #20	ENSCAFG00845018802 #21	HOXD9 (ENSCAFG00845018856) #23	HOXD10 (ENSCAFG00845019028) #22	HOXD4 (ENSCAFG00845019072) #25	HOXD3 (ENSCAFG00845019275) #26	HOXD1 (ENSCAFG00845019313) #28	MTX2 (ENSCAFG00845019381) #29	HNRNPA3 (ENSCAFG00845019864) ##31	NFE2L2 (ENSCAFG00845020022) #32	AGPS (ENSCAFG00845020190) #33	TTC30A (ENSCAFG00845020493) #34	PDE11A (ENSCAFG00845020545) #36	ENSCAFG00845020768	RBM45 (ENSCAFG00845020808)	OSBPL6 (ENSCAFG00845021295)	PJVK (ENSCAFG00845022256)	ENSCAFG00845022360	FKBP7 (ENSCAFG00845022485)
Red fox	MODERN SPECIES	15	SP9 (ENSVVUG00000012965)	CIR1 (ENSVVUG00000012957)	SCRN3 (ENSVVUG00000012946)	GPR155 (ENSVVUG00000012912) #7	ENSVVUG00000012900	WIPF1 (ENSVVUG00000012885) #9	CHRNA1 (ENSVVUG00000012830) #10	CHN1 (ENSVVUG00000012819) #12	ATF2 (ENSVVUG00000012774) #13	ATP5MC3 (ENSVVUG00000012759) #14	LNPK (ENSVVUG00000012737) #16	EVX2 (ENSVVUG00000012735) #18	HOXD13 (ENSVVUG00000012734) #19	HOXD12 (ENSVVUG00000012731) #20	ENSVVUG00000012726 #21	HOXD10 (ENSVVUG00000012722) #22	ENSVVUG00000012717 #23	HOXD8 (ENSVVUG00000012714) #24	HOXD3 (ENSVVUG00000012700) #26	ENSVVUG00000012694	ENSVVUG00000012682 #29	ENSVVUG00000012651 ##31	NFE2L2 (ENSVVUG00000012641) #32	ENSVVUG00000012637	ENSVVUG00000012634 #34	AGPS (ENSVVUG00000010164) #33	ENSVVUG00000010109 #34	PDE11A (ENSVVUG00000010094) #36	RBM45 (ENSVVUG00000010078)	OSBPL6 (ENSVVUG00000010039)	PRKRA (ENSVVUG00000010032)
Caniformia_b	ANCESTRAL SPECIES	13	ENSGT00570000080031	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000147479.a.b	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Ursidae	ANCESTRAL SPECIES	7	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000147479.a.b	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a.m.b #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.b #31	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791
Ursus	ANCESTRAL SPECIES	4	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000147479.a.b	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a.m.b #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.b #31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
American black bear	MODERN SPECIES	3042												EVX2 (ENSUAMG00000025680) #18	HOXD13 (ENSUAMG00000025683) #19	HOXD12 (ENSUAMG00000025684) #20	HOXD11 (ENSUAMG00000025686) #21	HOXD10 (ENSUAMG00000025688) #22	HOXD9 (ENSUAMG00000025690) #23	HOXD8 (ENSUAMG00000025693) #24	HOXD4 (ENSUAMG00000025697) #25	HOXD3 (ENSUAMG00000025698) #26	HOXD1 (ENSUAMG00000025700) #28
Polar bear	MODERN SPECIES	142	ENSUMAG00000015375	SP3 (ENSUMAG00000015395)	OLA1 (ENSUMAG00000015410)	ENSUMAG00000015413	CIR1 (ENSUMAG00000015415)	SCRN3 (ENSUMAG00000015422)	GPR155 (ENSUMAG00000015425) #7	ENSUMAG00000015461	ENSUMAG00000015473	CHRNA1 (ENSUMAG00000015480) #10	CHN1 (ENSUMAG00000015511) #12	ATF2 (ENSUMAG00000015564) #13	ATP5MC3 (ENSUMAG00000015579) #14	LNPK (ENSUMAG00000015613) #16	ENSUMAG00000015649 #21	HOXD10 (ENSUMAG00000015650) #22	ENSUMAG00000015653 #24	HOXD4 (ENSUMAG00000015658) #25	MTX2 (ENSUMAG00000015662) #29	ENSUMAG00000015686 #31	NFE2L2 (ENSUMAG00000015689) #32	AGPS (ENSUMAG00000015781) #33	ENSUMAG00000016390 #34	PDE11A (ENSUMAG00000016414) #36	RBM45 (ENSUMAG00000016503)	OSBPL6 (ENSUMAG00000016519)	PRKRA (ENSUMAG00000016566)	PJVK (ENSUMAG00000016572)	FKBP7 (ENSUMAG00000016577)	PLEKHA3 (ENSUMAG00000016580)	ENSUMAG00000016583
Giant Panda	MODERN SPECIES	11	SP9 (ENSAMEG00000028382)	CIR1 (ENSAMEG00000012211)	SCRN3 (ENSAMEG00000012230)	GPR155 (ENSAMEG00000012251) #7	ENSAMEG00000027164	WIPF1 (ENSAMEG00000012269) #9	CHRNA1 (ENSAMEG00000012277) #10	CHN1 (ENSAMEG00000012304) #12	ATF2 (ENSAMEG00000012333) #13	ATP5MC3 (ENSAMEG00000012367) #14	LNPK (ENSAMEG00000001869) #16	EVX2 (ENSAMEG00000001868) #18	HOXD13 (ENSAMEG00000001865) #19	HOXD12 (ENSAMEG00000023609) #20	ENSAMEG00000025193 #21	HOXD10 (ENSAMEG00000001849) #22	HOXD9 (ENSAMEG00000029987) #23	HOXD8 (ENSAMEG00000023565) #24	HOXD4 (ENSAMEG00000025663) #25	HOXD3 (ENSAMEG00000026957) #26	HOXD1 (ENSAMEG00000028345) #28	MTX2 (ENSAMEG00000001799) #29	ENSAMEG00000019906	HNRNPA3 (ENSAMEG00000011920) ##31	NFE2L2 (ENSAMEG00000011937) #32	AGPS (ENSAMEG00000011950) #33	PDE11A (ENSAMEG00000000902) #36	ENSAMEG00000023664	RBM45 (ENSAMEG00000000896)	OSBPL6 (ENSAMEG00000000825)	PRKRA (ENSAMEG00000000803)
Mustelinae	ANCESTRAL SPECIES	21	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00570000080031	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
American mink	MODERN SPECIES	222											LNPK (ENSNVIG00000007208) #16	EVX2 (ENSNVIG00000007198) #18	HOXD13 (ENSNVIG00000007186) #19	HOXD12 (ENSNVIG00000007175) #20	ENSNVIG00000007170 #21	HOXD10 (ENSNVIG00000007162) #22	HOXD9 (ENSNVIG00000007158) #23	ENSNVIG00000007149 #24	HOXD4 (ENSNVIG00000007138) #25	HOXD3 (ENSNVIG00000007128) #26	HOXD1 (ENSNVIG00000007113) #28	MTX2 (ENSNVIG00000007075) #29	HNRNPA3 (ENSNVIG00000007022) ##31	NFE2L2 (ENSNVIG00000006995) #32	AGPS (ENSNVIG00000006950) #33	ENSNVIG00000006929	PDE11A (ENSNVIG00000006854) #36	ENSNVIG00000006839	RBM45 (ENSNVIG00000006823)	OSBPL6 (ENSNVIG00000006388)	PRKRA (ENSNVIG00000006320)
Ferret	MODERN SPECIES	359	ENSMPUG00000013934	ENSMPUG00000013940	ENSMPUG00000013943	SCRN3 (ENSMPUG00000013961)	GPR155 (ENSMPUG00000013963) #7	ENSMPUG00000013967	CHRNA1 (ENSMPUG00000013974) #10	CHN1 (ENSMPUG00000013977) #12	ATF2 (ENSMPUG00000013983) #13	ATP5MC3 (ENSMPUG00000013986) #14	LNPK (ENSMPUG00000014007) #16	EVX2 (ENSMPUG00000014012) #18	HOXD13 (ENSMPUG00000014022) #19	HOXD12 (ENSMPUG00000014025) #20	HOXD11 (ENSMPUG00000014029) #21	HOXD10 (ENSMPUG00000014049) #22	HOXD9 (ENSMPUG00000014053) #23	ENSMPUG00000014060 #24	ENSMPUG00000014067	HOXD4 (ENSMPUG00000014070) #25	HOXD3 (ENSMPUG00000014072) #26	ENSMPUG00000014080	HOXD1 (ENSMPUG00000014084) #28	ENSMPUG00000014088	MTX2 (ENSMPUG00000014094) #29	ENSMPUG00000014101	ENSMPUG00000014103 #31	ENSMPUG00000014168 #32	ENSMPUG00000014172	AGPS (ENSMPUG00000014173) #33
Laurasiatheria_c	ANCESTRAL SPECIES	18	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Equus	ANCESTRAL SPECIES	18	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00390000005569.x.a.a.b	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Horse	MODERN SPECIES	9	OLA1 (ENSECAG00000016353)	SP9 (ENSECAG00000028902)	CIR1 (ENSECAG00000006773)	SCRN3 (ENSECAG00000018530)	GPR155 (ENSECAG00000008471) #7	WIPF1 (ENSECAG00000015984)	CHRNA1 (ENSECAG00000019649) #10	CHN1 (ENSECAG00000008277) #12	ATF2 (ENSECAG00000018723) #13	ATP5MC3 (ENSECAG00000008514) #14	LNPK (ENSECAG00000008534) #16	ENSECAG00000043913	EVX2 (ENSECAG00000019796) #18	HOXD13 (ENSECAG00000020388) #19	HOXD11 (ENSECAG00000003045) #21	HOXD10 (ENSECAG00000020599) #22	HOXD9 (ENSECAG00000021845) #23	HOXD8 (ENSECAG00000021980) #24	HOXD4 (ENSECAG00000038429) #25	HOXD3 (ENSECAG00000022129) #26	HOXD1 (ENSECAG00000035437) #28	MTX2 (ENSECAG00000022464) #29	HNRNPA3 (ENSECAG00000059976) ##31	NFE2L2 (ENSECAG00000005675) #32	AGPS (ENSECAG00000008695) #33	ENSECAG00000051775	ENSECAG00000000927 #34	PDE11A (ENSECAG00000004445) #36	ENSECAG00000057854	CYCT (ENSECAG00000016170)	RBM45 (ENSECAG00000017129)
Donkey	MODERN SPECIES	24	SP9 (ENSEASG00005022600)	CIR1 (ENSEASG00005022598)	SCRN3 (ENSEASG00005022597)	GPR155 (ENSEASG00005022591) #7	WIPF1 (ENSEASG00005022583) #9	CHRNA1 (ENSEASG00005022581) #10	CHN1 (ENSEASG00005022579) #12	ATF2 (ENSEASG00005022575) #13	ATP5MC3 (ENSEASG00005022573) #14	LNPK (ENSEASG00005022567) #16	ENSEASG00005022564	EVX2 (ENSEASG00005022562) #18	HOXD13 (ENSEASG00005029242) #19	HOXD12 (ENSEASG00005022555) #20	HOXD11 (ENSEASG00005030904) #21	HOXD10 (ENSEASG00005022552) #22	HOXD9 (ENSEASG00005023994) #23	HOXD8 (ENSEASG00005033905) #24	HOXD4 (ENSEASG00005024806) #25	HOXD3 (ENSEASG00005022544) #26	HOXD1 (ENSEASG00005030887) #28	MTX2 (ENSEASG00005022537) #29	HNRNPA3 (ENSEASG00005022530) ##31	NFE2L2 (ENSEASG00005028739) #32	ENSEASG00005026944 #34	AGPS (ENSEASG00005022514) #33	ENSEASG00005028303 #34	PDE11A (ENSEASG00005022489) #36	ENSEASG00005026887	RBM45 (ENSEASG00005022475)	OSBPL6 (ENSEASG00005022455)
Chiroptera	ANCESTRAL SPECIES	11	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Microchiroptera	ANCESTRAL SPECIES	15	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Greater horseshoe bat	MODERN SPECIES	26	ENSRFEG00010000897	SP9 (ENSRFEG00010000885)	CIR1 (ENSRFEG00010000863)	SCRN3 (ENSRFEG00010000835)	GPR155 (ENSRFEG00010000805) #7	WIPF1 (ENSRFEG00010000762) #9	CHRNA1 (ENSRFEG00010000686) #10	CHN1 (ENSRFEG00010000595) #12	ATF2 (ENSRFEG00010000479) #13	ENSRFEG00010000353 #14	LNPK (ENSRFEG00010000270) #16	EVX2 (ENSRFEG00010000230) #18	HOXD13 (ENSRFEG00010022173) #19	HOXD12 (ENSRFEG00010022172) #20	HOXD11 (ENSRFEG00010022171) #21	HOXD10 (ENSRFEG00010022170) #22	HOXD9 (ENSRFEG00010022169) #23	HOXD8 (ENSRFEG00010022168) #24	HOXD4 (ENSRFEG00010022166) #25	HOXD3 (ENSRFEG00010022165) #26	HOXD1 (ENSRFEG00010022164) #28	MTX2 (ENSRFEG00010022163) #29	ENSRFEG00010022161 ##31	NFE2L2 (ENSRFEG00010022160) #32	ENSRFEG00010022158 #33	ENSRFEG00010022157 #34	ENSRFEG00010022156 #34	PDE11A (ENSRFEG00010022154) #36	ENSRFEG00010022153	RBM45 (ENSRFEG00010022152)	OSBPL6 (ENSRFEG00010022151)
Microbat	MODERN SPECIES	942	ENSMLUG00000025196	CIR1 (ENSMLUG00000013807)	SCRN3 (ENSMLUG00000013823)	GPR155 (ENSMLUG00000013828) #7	WIPF1 (ENSMLUG00000022385) #9	CHRNA1 (ENSMLUG00000015698) #10	CHN1 (ENSMLUG00000015709) #12	ATF2 (ENSMLUG00000015718) #13	ENSMLUG00000012822 #14	LNPK (ENSMLUG00000006972) #16	ENSMLUG00000022478	EVX2 (ENSMLUG00000006989) #18	HOXD13 (ENSMLUG00000006997) #19	HOXD12 (ENSMLUG00000007009) #20	HOXD11 (ENSMLUG00000007030) #21	HOXD10 (ENSMLUG00000007048) #22	HOXD8 (ENSMLUG00000028864) #24	HOXD4 (ENSMLUG00000012508) #25	HOXD3 (ENSMLUG00000012510) #26	ENSMLUG00000029447 #28	MTX2 (ENSMLUG00000015966) #29	ENSMLUG00000003906 ##31	NFE2L2 (ENSMLUG00000003909) #32	ENSMLUG00000025480	AGPS (ENSMLUG00000005113) #33	ENSMLUG00000005126 #34	ENSMLUG00000005133 #34	ENSMLUG00000028755	PDE11A (ENSMLUG00000005135) #36	RBM45 (ENSMLUG00000005782)	OSBPL6 (ENSMLUG00000005787)
Megabat	MODERN SPECIES	1085											LNPK (ENSPVAG00000017411) #16	EVX2 (ENSPVAG00000017414) #18	HOXD13 (ENSPVAG00000017415) #19	HOXD12 (ENSPVAG00000017416) #20	HOXD11 (ENSPVAG00000017417) #21	HOXD10 (ENSPVAG00000017418) #22	HOXD8 (ENSPVAG00000017420) #24	HOXD3 (ENSPVAG00000017421) #26	HOXD1 (ENSPVAG00000017425) #28	MTX2 (ENSPVAG00000017426) #29
Artiodactyla	ANCESTRAL SPECIES	13	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116 #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618
Suina	ANCESTRAL SPECIES	3	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a.e #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00390000010491.kb.a	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b
Pig	MODERN SPECIES	6	CIR1 (ENSSSCG00000027516)	SCRN3 (ENSSSCG00000023297)	GPR155 (ENSSSCG00000015965) #7	ENSSSCG00000027348	CHRNA1 (ENSSSCG00000015969) #10	ENSSSCG00000022345 #12	ATF2 (ENSSSCG00000038076) #13	ATP5MC3 (ENSSSCG00000015973) #14	LNPK (ENSSSCG00000015976) #16	ENSSSCG00000039002	ENSSSCG00000053760	EVX2 (ENSSSCG00000023146) #18	HOXD13 (ENSSSCG00000057890) #19	HOXD12 (ENSSSCG00000015980) #20	HOXD11 (ENSSSCG00000034741) #21	HOXD10 (ENSSSCG00000015981) #22	HOXD9 (ENSSSCG00000015982) #23	HOXD8 (ENSSSCG00000040349) #24	HOXD4 (ENSSSCG00000015984) #25	HOXD3 (ENSSSCG00000015985) #26	HOXD1 (ENSSSCG00000015986) #28	MTX2 (ENSSSCG00000022222) #29	ENSSSCG00000015988 ##31	NFE2L2 (ENSSSCG00000015987) #32	AGPS (ENSSSCG00000023983) #33	PDE11A (ENSSSCG00000038903) #36	ENSSSCG00000047774	RBM45 (ENSSSCG00000015996)	OSBPL6 (ENSSSCG00000023133)	PRKRA (ENSSSCG00000038254)	PJVK (ENSSSCG00000015998)
Chacoan peccary	MODERN SPECIES	88	SP9 (ENSCWAG00000015261)	CIR1 (ENSCWAG00000015285)	SCRN3 (ENSCWAG00000015324)	GPR155 (ENSCWAG00000015434) #7	WIPF1 (ENSCWAG00000000086) #9	CHRNA1 (ENSCWAG00000000173) #10	CHN1 (ENSCWAG00000000417) #12	ATF2 (ENSCWAG00000000507) #13	ENSCWAG00000000620 #14	LNPK (ENSCWAG00000000637) #16	ENSCWAG00000000677	EVX2 (ENSCWAG00000000686) #18	HOXD13 (ENSCWAG00000000704) #19	HOXD12 (ENSCWAG00000000716) #20	HOXD11 (ENSCWAG00000000728) #21	HOXD10 (ENSCWAG00000000737) #22	HOXD9 (ENSCWAG00000000750) #23	HOXD8 (ENSCWAG00000000766) #24	HOXD4 (ENSCWAG00000000799) #25	HOXD3 (ENSCWAG00000000815) #26	HOXD1 (ENSCWAG00000000831) #28	MTX2 (ENSCWAG00000000848) #29	HNRNPA3 (ENSCWAG00000000880) ##31	NFE2L2 (ENSCWAG00000000916) #32	AGPS (ENSCWAG00000000957) #33	PDE11A (ENSCWAG00000001000) #36	ENSCWAG00000001084	RBM45 (ENSCWAG00000001104)	OSBPL6 (ENSCWAG00000001227)	PRKRA (ENSCWAG00000001459)	PJVK (ENSCWAG00000001480)
Artiodactyla_a	ANCESTRAL SPECIES	13	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.fc.a #34	ENSGT00390000010116.fc.b #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791
Artiodactyla_b	ANCESTRAL SPECIES	12	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.fc.a #34	ENSGT00390000010116.fc.b #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791
Pecora	ANCESTRAL SPECIES	24	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.fc.a #34	ENSGT00390000010116.fc.b #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791
Yarkand deer	MODERN SPECIES	26	CIR1 (ENSCHYG00000018323)	ENSCHYG00000018263	GPR155 (ENSCHYG00000018083) #7	ENSCHYG00000017877	CHRNA1 (ENSCHYG00000017619) #10	ENSCHYG00000017575	CHN1 (ENSCHYG00000017015) #12	ATF2 (ENSCHYG00000016575) #13	ATP5MC3 (ENSCHYG00000016464) #14	ENSCHYG00000016417	ENSCHYG00000016391	LNPK (ENSCHYG00000016125) #16	HOXD13 (ENSCHYG00000015985) #19	HOXD12 (ENSCHYG00000015954) #20	ENSCHYG00000015846	HOXD10 (ENSCHYG00000015831) #22	HOXD9 (ENSCHYG00000015808) #23	HOXD8 (ENSCHYG00000015741) #24	HOXD4 (ENSCHYG00000015683) #25	HOXD3 (ENSCHYG00000015650) #26	HOXD1 (ENSCHYG00000015562) #28	MTX2 (ENSCHYG00000015392) #29	ENSCHYG00000015305	ENSCHYG00000015038 ##31	NFE2L2 (ENSCHYG00000024719) #32	AGPS (ENSCHYG00000024578) #33	ENSCHYG00000024559 #34	ENSCHYG00000024550 #34	PDE11A (ENSCHYG00000024466) #36	ENSCHYG00000024445	ENSCHYG00000024431
Percora_a	ANCESTRAL SPECIES	5	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.fc.a #34	ENSGT00390000010116.fc.b #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791
Bovidae	ANCESTRAL SPECIES	8	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.fc.a #34	ENSGT00390000010116.fc.b #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791
Caprinae	ANCESTRAL SPECIES	5	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT01010000228762	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.fc.a #34	ENSGT00390000010116.fc.b #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791
Rambouillet Sheep	MODERN SPECIES	11	SCRN3 (ENSOARG00020001508)	GPR155 (ENSOARG00020001419) #7	ENSOARG00020001367	CHRNA1 (ENSOARG00020001273) #10	ENSOARG00020001229	ENSOARG00020001216	CHN1 (ENSOARG00020000831) #12	ATF2 (ENSOARG00020000583) #13	ATP5MC3 (ENSOARG00020000538) #14	LNPK (ENSOARG00020000416) #16	ENSOARG00020000394	EVX2 (ENSOARG00020000381) #18	HOXD13 (ENSOARG00020000373) #19	HOXD12 (ENSOARG00020000357) #20	hoxd11 (ENSOARG00020000346) #21	HOXD10 (ENSOARG00020000330) #22	HOXD9 (ENSOARG00020000321) #23	HOXD8 (ENSOARG00020000297) #24	HOXD4 (ENSOARG00020000275) #25	HOXD3 (ENSOARG00020000257) #26	HOXD1 (ENSOARG00020000237) #28	MTX2 (ENSOARG00020000188) #29	HNRNPA3 (ENSOARG00020000123) ##31	NFE2L2 (ENSOARG00020022726) #32	AGPS (ENSOARG00020022410) #33	ENSOARG00020022373 #34	ENSOARG00020022364 #34	PDE11A (ENSOARG00020022115) #36	ENSOARG00020022078	RBM45 (ENSOARG00020022028)	OSBPL6 (ENSOARG00020020986)
Goat	MODERN SPECIES	11	SCRN3 (ENSCHIG00000010523)	GPR155 (ENSCHIG00000024827) #7	ENSCHIG00000009043	CHRNA1 (ENSCHIG00000018272) #10	CHN1 (ENSCHIG00000017514) #12	ENSCHIG00000012635	ATF2 (ENSCHIG00000011446) #13	ENSCHIG00000018041 #14	LNPK (ENSCHIG00000012313) #16	ENSCHIG00000025787	ENSCHIG00000004992	EVX2 (ENSCHIG00000026644) #18	HOXD13 (ENSCHIG00000009994) #19	HOXD12 (ENSCHIG00000014734) #20	HOXD11 (ENSCHIG00000026087) #21	HOXD10 (ENSCHIG00000011771) #22	HOXD9 (ENSCHIG00000023245) #23	HOXD8 (ENSCHIG00000013371) #24	HOXD4 (ENSCHIG00000019702) #25	HOXD3 (ENSCHIG00000011624) #26	HOXD1 (ENSCHIG00000017515) #28	MTX2 (ENSCHIG00000008892) #29	ENSCHIG00000015430 ##31	NFE2L2 (ENSCHIG00000026055) #32	AGPS (ENSCHIG00000015256) #33	ENSCHIG00000011750 #34	ENSCHIG00000011716 #34	PDE11A (ENSCHIG00000016852) #36	ENSCHIG00000026156	RBM45 (ENSCHIG00000010687)	ENSCHIG00000017164
Bovinae	ANCESTRAL SPECIES	5	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00940000153299.c.a.b.u.a	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b.tb.a ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.fc.a #34	ENSGT00390000010116.fc.b #34	ENSGT01100000263474.a.b.b.f.g.a.b	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059
Bos	ANCESTRAL SPECIES	6	ENSGT00390000000673.b.`c	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00940000153299.c.a.b.u.a	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b.tb.a ##31	ENSGT00940000153147.m.a.a.a.b.a.b.tb.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.fc.a #34	ENSGT01100000263480.a.a.a.b.a.a.a.a.b.a	ENSGT00390000010116.fc.b #34	ENSGT01100000263474.a.b.b.f.g.a.b	ENSGT00940000162151 #36
Bos_b	ANCESTRAL SPECIES	3	ENSGT00940000166167.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT01030000234916.g.b	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b.tb.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.fc.a #34	ENSGT01100000263480.a.a.a.b.a.a.a.a.b.a	ENSGT00390000010116.fc.b #34	ENSGT01100000263474.a.b.b.f.g.a.b	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a
Hybrid Bos Indicus	MODERN SPECIES	11	SCRN3 (ENSBIXG00005028812)	GPR155 (ENSBIXG00005028873) #7	ENSBIXG00005002196	CHRNA1 (ENSBIXG00005028981) #10	CHN1 (ENSBIXG00005001962) #12	ATF2 (ENSBIXG00005001719) #13	ATP5MC3 (ENSBIXG00005029222) #14	ENSBIXG00005029239	LNPK (ENSBIXG00005005282) #16	ENSBIXG00005029245	ENSBIXG00005029246	EVX2 (ENSBIXG00005005288) #18	HOXD13 (ENSBIXG00005001519) #19	HOXD12 (ENSBIXG00005001517) #20	HOXD11 (ENSBIXG00005001515) #21	HOXD10 (ENSBIXG00005005289) #22	HOXD9 (ENSBIXG00005030437) #23	HOXD8 (ENSBIXG00005030431) #24	HOXD3 (ENSBIXG00005030419) #26	HOXD1 (ENSBIXG00005030413) #28	MTX2 (ENSBIXG00005030400) #29	ENSBIXG00005030356	ENSBIXG00005030352	HNRNPA3 (ENSBIXG00005030333) ##31	NFE2L2 (ENSBIXG00005030317) #32	AGPS (ENSBIXG00005030278) #33	ENSBIXG00005030257 #34	ENSBIXG00005030245	ENSBIXG00005030242 #34	PDE11A (ENSBIXG00005030175) #36	ENSBIXG00005030117
Cow	MODERN SPECIES	11	SCRN3 (ENSBTAG00000012966)	GPR155 (ENSBTAG00000021636) #7	WIPF1 (ENSBTAG00000001585)	CHRNA1 (ENSBTAG00000018253) #10	CHN1 (ENSBTAG00000008028) #12	ATF2 (ENSBTAG00000002295) #13	ATP5MC3 (ENSBTAG00000002944) #14	ENSBTAG00000031711	LNPK (ENSBTAG00000018061) #16	ENSBTAG00000050237	ENSBTAG00000002009	EVX2 (ENSBTAG00000049537) #18	HOXD13 (ENSBTAG00000004313) #19	HOXD12 (ENSBTAG00000004314) #20	HOXD11 (ENSBTAG00000033330) #21	HOXD10 (ENSBTAG00000016030) #22	HOXD9 (ENSBTAG00000016033) #23	HOXD8 (ENSBTAG00000049845) #24	HOXD4 (ENSBTAG00000039581) #25	HOXD3 (ENSBTAG00000004835) #26	HOXD1 (ENSBTAG00000015840) #28	MTX2 (ENSBTAG00000006693) #29	HNRNPA3 (ENSBTAG00000021580) ##31	NFE2L2 (ENSBTAG00000019255) #32	AGPS (ENSBTAG00000009897) #33	TTC30B (ENSBTAG00000027696) #34	TTC30A (ENSBTAG00000027694) #34	ENSBTAG00000049860	PDE11A (ENSBTAG00000016396) #36	CYCT (ENSBTAG00000039522)	RBM45 (ENSBTAG00000006168)
Bos_a	ANCESTRAL SPECIES	4	ENSGT00390000000673.b.`c	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00940000153299.c.a.b.u.a	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b.tb.a ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.fc.a #34	ENSGT01100000263480.a.a.a.b.a.a.a.a.b.a	ENSGT00390000010116.fc.b #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059
Domestic yak	MODERN SPECIES	11	CIR1 (ENSBGRG00000014162)	SCRN3 (ENSBGRG00000014271)	GPR155 (ENSBGRG00000014360) #7	ENSBGRG00000014674	ENSBGRG00000014699	CHRNA1 (ENSBGRG00000014839) #10	CHN1 (ENSBGRG00000015101) #12	ATF2 (ENSBGRG00000015648) #13	ATP5MC3 (ENSBGRG00000016024) #14	ENSBGRG00000016132	LNPK (ENSBGRG00000016182) #16	EVX2 (ENSBGRG00000016780) #18	HOXD13 (ENSBGRG00000016836) #19	HOXD12 (ENSBGRG00000016890) #20	HOXD11 (ENSBGRG00000016923) #21	HOXD10 (ENSBGRG00000016979) #22	HOXD9 (ENSBGRG00000017014) #23	HOXD8 (ENSBGRG00000017045) #24	ENSBGRG00000017167 #25	HOXD3 (ENSBGRG00000017255) #26	HOXD1 (ENSBGRG00000017303) #28	MTX2 (ENSBGRG00000017363) #29	ENSBGRG00000000202 ##31	NFE2L2 (ENSBGRG00000000213) #32	AGPS (ENSBGRG00000000237) #33	ENSBGRG00000000256 #34	ENSBGRG00000000264	ENSBGRG00000000270 #34	PDE11A (ENSBGRG00000000288) #36	ENSBGRG00000000317	ENSBGRG00000000319
Wild yak	MODERN SPECIES	2654											LNPK (ENSBMUG00000015713) #16	ENSBMUG00000015669	ENSBMUG00000015650	HOXD13 (ENSBMUG00000015639) #19	HOXD12 (ENSBMUG00000015618) #20	HOXD10 (ENSBMUG00000015601) #22	ENSBMUG00000015587 #24	HOXD3 (ENSBMUG00000015572) #26	ENSBMUG00000015556
American bison	MODERN SPECIES	3320	SP9 (ENSBBBG00000016959)	CIR1 (ENSBBBG00000016992)	SCRN3 (ENSBBBG00000017011)	GPR155 (ENSBBBG00000017134) #7	WIPF1 (ENSBBBG00000017196) #9	CHRNA1 (ENSBBBG00000017301) #10	CHN1 (ENSBBBG00000004302) #12	ATF2 (ENSBBBG00000017564) #13	ATP5MC3 (ENSBBBG00000017586) #14	ENSBBBG00000017593	LNPK (ENSBBBG00000017627) #16	ENSBBBG00000017634	ENSBBBG00000017638	HOXD13 (ENSBBBG00000017641) #19	HOXD12 (ENSBBBG00000017645) #20	HOXD10 (ENSBBBG00000006962) #22	HOXD9 (ENSBBBG00000017650) #23	HOXD8 (ENSBBBG00000017657) #24	HOXD4 (ENSBBBG00000017669) #25	HOXD3 (ENSBBBG00000017682) #26	HOXD1 (ENSBBBG00000017690) #28	ENSBBBG00000004376	ENSBBBG00000017700	MTX2 (ENSBBBG00000017733) #29	ENSBBBG00000007269 ##31	NFE2L2 (ENSBBBG00000017780) #32	AGPS (ENSBBBG00000017817) #33	ENSBBBG00000007701 #34	ENSBBBG00000017832 #34	ENSBBBG00000017839	PDE11A (ENSBBBG00000017894) #36
Siberian musk deer	MODERN SPECIES	342							ENSMMSG00000008116	ENSMMSG00000008102 ##12	ATF2 (ENSMMSG00000007713) #13	ENSMMSG00000007642 #14	LNPK (ENSMMSG00000007582) #16	EVX2 (ENSMMSG00000007555) #18	HOXD13 (ENSMMSG00000007541) #19	HOXD12 (ENSMMSG00000007530) #20	HOXD11 (ENSMMSG00000007513) #21	HOXD10 (ENSMMSG00000007495) #22	HOXD9 (ENSMMSG00000007480) #23	HOXD8 (ENSMMSG00000007407) #24	HOXD4 (ENSMMSG00000007365) #25	HOXD3 (ENSMMSG00000007343) #26	HOXD1 (ENSMMSG00000007322) #28	MTX2 (ENSMMSG00000007226) #29	ENSMMSG00000007068 ##31	NFE2L2 (ENSMMSG00000006992) #32	ENSMMSG00000006963	AGPS (ENSMMSG00000006894) #33	ENSMMSG00000006854 #34	ENSMMSG00000006819 #34	PDE11A (ENSMMSG00000006654) #36	ENSMMSG00000006624	RBM45 (ENSMMSG00000006596)
Cetacea	ANCESTRAL SPECIES	14	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135.j	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00940000171387	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.fc.a #34	ENSGT00390000010116.fc.b #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791
Odontoceti	ANCESTRAL SPECIES	13	ENSGT00940000162304	ENSGT00730000111135.j	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00940000171387	ENSGT00390000004755.tb.a.a	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##31	ENSGT00940000153147.m.a.a.a.b.a.a.hb.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.fc.a #34	ENSGT00390000010116.fc.b #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059
Odontoceti_a	ANCESTRAL SPECIES	10	ENSGT00940000162304	ENSGT00730000111135.j	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00940000171387	ENSGT00390000004755.tb.a.a	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##31	ENSGT00940000153147.m.a.a.a.b.a.a.hb.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.fc.a #34	ENSGT00390000010116.fc.b #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059
Odontoceti_b	ANCESTRAL SPECIES	12	ENSGT00730000111135.j	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00940000171387	ENSGT00390000004755.tb.a.a	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000008142.t	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.fc.a #34	ENSGT00390000010116.fc.b #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791
Monodontidae	ANCESTRAL SPECIES	10	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00940000171387	ENSGT00390000004755.tb.a.a	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000008142.t	ENSGT00950000182834.A.a.a.t	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a.hb.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.fc.a #34	ENSGT00390000010116.fc.b #34	ENSGT00940000162151 #36	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059	ENSGT00940000156791
Narwhal	MODERN SPECIES	302	SCRN3 (ENSMMNG00015008267)	GPR155 (ENSMMNG00015008223) #7	ENSMMNG00015008159	ENSMMNG00015008133	CHRNA1 (ENSMMNG00015008057) #10	CHN1 (ENSMMNG00015007913) #12	ATF2 (ENSMMNG00015007777) #13	ATP5MC3 (ENSMMNG00015007729) #14	ENSMMNG00015007699	ENSMMNG00015007684	LNPK (ENSMMNG00015007647) #16	EVX2 (ENSMMNG00015007622) #18	HOXD13 (ENSMMNG00015007609) #19	HOXD12 (ENSMMNG00015007598) #20	ENSMMNG00015007589 #21	HOXD10 (ENSMMNG00015007571) #22	HOXD9 (ENSMMNG00015007556) #23	HOXD8 (ENSMMNG00015007526) #24	HOXD4 (ENSMMNG00015007477) #25	HOXD3 (ENSMMNG00015007460) #26	HOXD1 (ENSMMNG00015007440) #28	MTX2 (ENSMMNG00015007394) #29	ENSMMNG00015007339 ##31	NFE2L2 (ENSMMNG00015007306) #32	AGPS (ENSMMNG00015007255) #33	ENSMMNG00015007232 #34	ENSMMNG00015007201 #34	ENSMMNG00015014296	PDE11A (ENSMMNG00015014260) #36	ENSMMNG00015014238	RBM45 (ENSMMNG00015014220)
Beluga whale	MODERN SPECIES	84	SCRN3 (ENSDLEG00000008164)	GPR155 (ENSDLEG00000008209) #7	WIPF1 (ENSDLEG00000008289)	ENSDLEG00000008360	CHRNA1 (ENSDLEG00000008433) #10	CHN1 (ENSDLEG00000008654) #12	ATF2 (ENSDLEG00000008726) #13	ATP5G3 (ENSDLEG00000008800) #14	ENSDLEG00000008837	ENSDLEG00000008854	LNPK (ENSDLEG00000008885) #16	EVX2 (ENSDLEG00000008943) #18	HOXD13 (ENSDLEG00000009014) #19	HOXD12 (ENSDLEG00000009038) #20	ENSDLEG00000009052 #21	HOXD10 (ENSDLEG00000009076) #22	HOXD9 (ENSDLEG00000009091) #23	HOXD8 (ENSDLEG00000009104) #24	HOXD4 (ENSDLEG00000009166) #25	HOXD3 (ENSDLEG00000009171) #26	HOXD1 (ENSDLEG00000009181) #28	MTX2 (ENSDLEG00000009199) #29	ENSDLEG00000009227 ##31	NFE2L2 (ENSDLEG00000009266) #32	AGPS (ENSDLEG00000009335) #33	ENSDLEG00000009463 #34	ENSDLEG00000009469 #34	ENSDLEG00000009481 #36	ENSDLEG00000009493	RBM45 (ENSDLEG00000009507)	OSBPL6 (ENSDLEG00000009570)
Vaquita	MODERN SPECIES	18	CIR1 (ENSPSNG00000006675)	SCRN3 (ENSPSNG00000006611)	ENSPSNG00000006580 #7	ENSPSNG00000006539	CHRNA1 (ENSPSNG00000006481) #10	CHN1 (ENSPSNG00000006315) #12	ATF2 (ENSPSNG00000006111) #13	ATP5MC3 (ENSPSNG00000006024) #14	ENSPSNG00000005869	ENSPSNG00000005846	LNPK (ENSPSNG00000005786) #16	EVX2 (ENSPSNG00000005734) #18	HOXD13 (ENSPSNG00000005715) #19	HOXD12 (ENSPSNG00000005695) #20	HOXD11 (ENSPSNG00000005666) #21	HOXD10 (ENSPSNG00000005654) #22	HOXD9 (ENSPSNG00000005639) #23	HOXD8 (ENSPSNG00000005602) #24	HOXD4 (ENSPSNG00000005556) #25	HOXD3 (ENSPSNG00000005539) #26	HOXD1 (ENSPSNG00000005524) #28	MTX2 (ENSPSNG00000005488) #29	ENSPSNG00000005439 ##31	NFE2L2 (ENSPSNG00000005384) #32	AGPS (ENSPSNG00000005315) #33	ENSPSNG00000005284 #34	ENSPSNG00000007902 #34	PDE11A (ENSPSNG00000007618) #36	ENSPSNG00000007564	RBM45 (ENSPSNG00000007527)	OSBPL6 (ENSPSNG00000007225)
Sperm whale	MODERN SPECIES	11	SP9 (ENSPCTG00005005728)	CIR1 (ENSPCTG00005005746)	SCRN3 (ENSPCTG00005005779)	GPR155 (ENSPCTG00005005831) #7	WIPF1 (ENSPCTG00005005895)	ENSPCTG00005005929	CHRNA1 (ENSPCTG00005005965) #10	CHN1 (ENSPCTG00005006263) #12	ATF2 (ENSPCTG00005007004) #13	ATP5MC3 (ENSPCTG00005007202) #14	LNPK (ENSPCTG00005007293) #16	EVX2 (ENSPCTG00005007330) #18	HOXD13 (ENSPCTG00005007354) #19	HOXD12 (ENSPCTG00005007367) #20	ENSPCTG00005007381 #21	HOXD10 (ENSPCTG00005007393) #22	HOXD9 (ENSPCTG00005007399) #23	HOXD8 (ENSPCTG00005007418) #24	HOXD4 (ENSPCTG00005007493) #25	HOXD3 (ENSPCTG00005007508) #26	HOXD1 (ENSPCTG00005007516) #28	MTX2 (ENSPCTG00005007528) #29	ENSPCTG00005003466 ##31	NFE2L2 (ENSPCTG00005003486) #32	AGPS (ENSPCTG00005003530) #33	ENSPCTG00005003590 #34	ENSPCTG00005003599 #34	PDE11A (ENSPCTG00005003616) #36	ENSPCTG00005003686	RBM45 (ENSPCTG00005003694)	OSBPL6 (ENSPCTG00005003757)
Blue whale	MODERN SPECIES	18	SP9 (ENSBMSG00010005500)	CIR1 (ENSBMSG00010005507)	SCRN3 (ENSBMSG00010005522)	GPR155 (ENSBMSG00010005540) #7	ENSBMSG00010005563	ENSBMSG00010005581	CHRNA1 (ENSBMSG00010005615) #10	CHN1 (ENSBMSG00010005726) #12	ATF2 (ENSBMSG00010005883) #13	ATP5MC3 (ENSBMSG00010005937) #14	LNPK (ENSBMSG00010005955) #16	EVX2 (ENSBMSG00010005974) #18	HOXD13 (ENSBMSG00010005980) #19	HOXD12 (ENSBMSG00010005987) #20	HOXD11 (ENSBMSG00010005993) #21	HOXD10 (ENSBMSG00010006002) #22	HOXD9 (ENSBMSG00010006014) #23	HOXD8 (ENSBMSG00010006022) #24	HOXD4 (ENSBMSG00010006036) #25	HOXD3 (ENSBMSG00010006046) #26	HOXD1 (ENSBMSG00010006055) #28	MTX2 (ENSBMSG00010006100) #29	ENSBMSG00010006149 ##31	NFE2L2 (ENSBMSG00010006157) #32	AGPS (ENSBMSG00010006175) #33	ENSBMSG00010006193 #34	ENSBMSG00010006199 #34	PDE11A (ENSBMSG00010006216) #36	ENSBMSG00010006255	ENSBMSG00010006266	RBM45 (ENSBMSG00010006279)
Camelidae	ANCESTRAL SPECIES	16	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #16	ENSGT00940000161025 #18	ENSGT00940000161457 #19	ENSGT00940000159938 #20	ENSGT00940000161308 #21	ENSGT00940000158266 #22	ENSGT00940000161503 #23	ENSGT00940000161653 #24	ENSGT00940000157270 #25	ENSGT00940000160027 #26	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b ##31	ENSGT00950000182892.a.a.b #32	ENSGT00940000156112 #33	ENSGT00390000010116.fc.b #34	ENSGT00940000162151 #36	ENSGT00680000100059	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964
Arabian camel	MODERN SPECIES	31	ENSCDRG00005001752	SP9 (ENSCDRG00005001817)	CIR1 (ENSCDRG00005001834)	SCRN3 (ENSCDRG00005001860)	GPR155 (ENSCDRG00005001897) #7	ENSCDRG00005001936 #9	CHRNA1 (ENSCDRG00005001973) #10	CHN1 (ENSCDRG00005002091) #12	ATF2 (ENSCDRG00005002159) #13	ATP5MC3 (ENSCDRG00005002307) #14	LNPK (ENSCDRG00005002325) #16	EVX2 (ENSCDRG00005002358) #18	HOXD13 (ENSCDRG00005002411) #19	HOXD12 (ENSCDRG00005002432) #20	HOXD11 (ENSCDRG00005002440) #21	HOXD10 (ENSCDRG00005002456) #22	HOXD9 (ENSCDRG00005002467) #23	HOXD8 (ENSCDRG00005002477) #24	HOXD4 (ENSCDRG00005002497) #25	HOXD3 (ENSCDRG00005002512) #26	MTX2 (ENSCDRG00005002532) #29	HNRNPA3 (ENSCDRG00005002567) ##31	NFE2L2 (ENSCDRG00005002588) #32	AGPS (ENSCDRG00005002612) #33	ENSCDRG00005002654 #34	ENSCDRG00005002663 #34	PDE11A (ENSCDRG00005002676) #36	RBM45 (ENSCDRG00005002693)	OSBPL6 (ENSCDRG00005002764)	ENSCDRG00005002982	PRKRA (ENSCDRG00005002991)
Alpaca	MODERN SPECIES	285														HOXD13 (ENSVPAG00000010195) #19	HOXD12 (ENSVPAG00000010196) #20	HOXD10 (ENSVPAG00000010197) #22	HOXD9 (ENSVPAG00000010198) #23	MTX2 (ENSVPAG00000010200) #29