Pecora	ANCESTRAL SPECIES	23	ENSGT00940000158055	ENSGT00530000063529.A #7	ENSGT00940000154103.a #8	ENSGT00940000154936.qb #10	ENSGT00730000111659 #9	ENSGT00950000183171.B #11	ENSGT00940000153259.a.a.b #12	ENSGT00390000016695 #13	ENSGT00940000159187 #14	ENSGT00940000160956 #15	ENSGT00950000183079.A.b.c.b #16	ENSGT00940000153716.A #18	ENSGT00390000008171 #17	ENSGT00500000045005 #19	ENSGT00390000003152.j #20	ENSGT00940000159161 #22	ENSGT00940000153139.A #23	ENSGT00390000016366 #24	ENSGT00940000161739 #25	ENSGT00390000015473 #26	ENSGT00390000007182 #27	ENSGT01030000235001.a	ENSGT01030000234513.B.b.j #28	ENSGT01030000235001.b	ENSGT01030000234513.B.b.i #29	ENSGT01050000244864.B.b #30	ENSGT00940000157028 #31	ENSGT00940000162379 #32	ENSGT00940000157358 #33	ENSGT00730000111087 #34	ENSGT00940000160555 #35
Percora_a	ANCESTRAL SPECIES	25	ENSGT00940000158055	ENSGT00530000063529.A #7	ENSGT00940000154103.a #8	ENSGT00940000154936.qb #10	ENSGT00730000111659 #9	ENSGT00950000183171.B #11	ENSGT00940000153259.a.a.b #12	ENSGT00390000016695 #13	ENSGT00940000159187 #14	ENSGT00940000160956 #15	ENSGT00950000183079.A.b.c.b #16	ENSGT00940000153716.A #18	ENSGT00390000008171 #17	ENSGT00500000045005 #19	ENSGT00390000003152.j #20	ENSGT00940000159161 #22	ENSGT00940000153139.A #23	ENSGT00390000016366 #24	ENSGT00940000161739 #25	ENSGT00390000015473 #26	ENSGT00390000007182 #27	ENSGT01030000235001.a	ENSGT01030000234513.B.b.j #28	ENSGT01030000235001.b	ENSGT01030000234513.B.b.i #29	ENSGT01050000244864.B.b #30	ENSGT00940000157028 #31	ENSGT00940000162379 #32	ENSGT00940000157358 #33	ENSGT00730000111087 #34	ENSGT00940000160555 #35
Bovidae	ANCESTRAL SPECIES	25	ENSGT00940000158055	ENSGT00530000063529.A #7	ENSGT00940000154103.a #8	ENSGT00940000154936.qb #10	ENSGT00730000111659 #9	ENSGT00950000183171.B #11	ENSGT00940000153259.a.a.b #12	ENSGT00390000016695 #13	ENSGT00940000159187 #14	ENSGT00940000160956 #15	ENSGT00950000183079.A.b.c.b #16	ENSGT00940000153716.A #18	ENSGT00390000008171 #17	ENSGT00500000045005 #19	ENSGT00390000003152.j #20	ENSGT00940000159161 #22	ENSGT00940000153139.A #23	ENSGT00390000016366 #24	ENSGT00940000161739 #25	ENSGT00390000015473 #26	ENSGT00390000007182 #27	ENSGT01030000235001.a	ENSGT01030000234513.B.b.j #28	ENSGT01030000235001.b	ENSGT01030000234513.B.b.i #29	ENSGT01050000244864.B.b #30	ENSGT00940000157028 #31	ENSGT00940000162379 #32	ENSGT00940000157358 #33	ENSGT00730000111087 #34	ENSGT00940000160555 #35
Caprinae	ANCESTRAL SPECIES	28	ENSGT00530000063529.A #7	ENSGT00940000154103.a #8	ENSGT00940000154936.qb #10	ENSGT00730000111659 #9	ENSGT00950000183171.B #11	ENSGT00940000153259.a.a.b #12	ENSGT00390000016695 #13	ENSGT00940000159187 #14	ENSGT00940000160956 #15	ENSGT00950000183079.A.b.c.b #16	ENSGT00940000153716.A #18	ENSGT00390000008171.ab ##17	ENSGT00390000008171.`b #17	ENSGT00500000045005.l #19	ENSGT00390000003152.j #20	ENSGT00940000159161 #22	ENSGT00940000153139.A #23	ENSGT00390000016366 #24	ENSGT00940000161739 #25	ENSGT00390000015473 #26	ENSGT00390000007182 #27	ENSGT01030000235001.a	ENSGT01030000234513.B.b.j #28	ENSGT01030000235001.b	ENSGT01030000234513.B.b.i #29	ENSGT01050000244864.B.b #30	ENSGT00940000157028 #31	ENSGT00940000162379 #32	ENSGT00940000157358 #33	ENSGT00730000111087 #34	ENSGT00940000160555 #35
Goat	MODERN SPECIES	3	AMER2 (ENSCHIG00000002328) #7	SPATA13 (ENSCHIG00000023348) #8	ENSCHIG00000019907 #9	ENSCHIG00000014869 #10	MIPEP (ENSCHIG00000021861) #11	TNFRSF19 (ENSCHIG00000021901) #12	SACS (ENSCHIG00000021941) #13	SGCG (ENSCHIG00000010887) #14	FGF9 (ENSCHIG00000020738) #15	MICU2 (ENSCHIG00000019056) #16	ENSCHIG00000013087 #17	ZDHHC20 (ENSCHIG00000018849) #18	ENSCHIG00000017508 #19	SAP18 (ENSCHIG00000016828) #20	ENSCHIG00000020953 #21	LATS2 (ENSCHIG00000020837) #22	XPO4 (ENSCHIG00000016203) #23	EEF1AKMT1 (ENSCHIG00000018520) #24	IL17D (ENSCHIG00000014106) #25	IFT88 (ENSCHIG00000020831) #26	CRYL1 (ENSCHIG00000020031) #27	GJB6 (ENSCHIG00000007375) #28	GJB2 (ENSCHIG00000004710) #29	GJA3 (ENSCHIG00000003023) #30	ZMYM2 (ENSCHIG00000011031) #31	ZMYM5 (ENSCHIG00000022250) #32	PSPC1 (ENSCHIG00000016708) #33	MPHOSPH8 (ENSCHIG00000020165) #34	PARP4 (ENSCHIG00000016066) #35	CENPJ (ENSCHIG00000004741) #36	RNF17 (ENSCHIG00000026716) #37
Rambouillet Sheep	MODERN SPECIES	1	NUP58 (ENSOARG00020003279)	MTMR6 (ENSOARG00020003588)	AMER2 (ENSOARG00020003659) #7	ENSOARG00020003885 #10	ENSOARG00020003949 #9	MIPEP (ENSOARG00020003971) #11	TNFRSF19 (ENSOARG00020004054) #12	SACS (ENSOARG00020004146) #13	SGCG (ENSOARG00020004193) #14	FGF9 (ENSOARG00020004253) #15	MICU2 (ENSOARG00020004275) #16	ZDHHC20 (ENSOARG00020004328) #18	ENSOARG00020004438 ##17	ENSOARG00020004447 #19	SAP18 (ENSOARG00020004477) #20	LATS2 (ENSOARG00020004530) #22	XPO4 (ENSOARG00020004563) #23	EEF1AKMT1 (ENSOARG00020004604) #24	IL17D (ENSOARG00020004623) #25	IFT88 (ENSOARG00020004679) #26	CRYL1 (ENSOARG00020004947) #27	ENSOARG00020004993	GJB6 (ENSOARG00020005011) #28	ENSOARG00020005030	GJB2 (ENSOARG00020005049) #29	GJA3 (ENSOARG00020005065) #30	ZMYM2 (ENSOARG00020005084) #31	ENSOARG00020005187	ZMYM5 (ENSOARG00020005220) #32	PSPC1 (ENSOARG00020005341) #33	ENSOARG00020005378
Bovinae	ANCESTRAL SPECIES	29	ENSGT00940000158055	ENSGT00530000063529.A #7	ENSGT00940000154103.a #8	ENSGT00940000154936.qb #10	ENSGT00730000111659 #9	ENSGT00950000183171.B #11	ENSGT00940000153259.a.a.b #12	ENSGT00390000016695 #13	ENSGT00940000159187 #14	ENSGT00940000160956 #15	ENSGT00950000183079.A.b.c.b #16	ENSGT00940000153716.A #18	ENSGT00390000008171 #17	ENSGT00500000045005 #19	ENSGT00390000003152.j #20	ENSGT00940000159161 #22	ENSGT00940000153139.A #23	ENSGT00390000016366.g.a #24	ENSGT00940000161739 #25	ENSGT00390000015473 #26	ENSGT00390000007182 #27	ENSGT01030000235001.a	ENSGT01030000234513.B.b.j #28	ENSGT01030000235001.b	ENSGT01030000234513.B.b.i #29	ENSGT01050000244864.B.b #30	ENSGT00940000157028 #31	ENSGT00390000002565.u.b	ENSGT00940000162379 #32	ENSGT00940000157358 #33	ENSGT00730000111087 #34
Bos	ANCESTRAL SPECIES	28	ENSGT00940000158055	ENSGT00530000063529.A #7	ENSGT00940000154103.a #8	ENSGT00940000154936.qb #10	ENSGT00730000111659 #9	ENSGT00950000183171.B #11	ENSGT00940000153259.a.a.b #12	ENSGT00390000016695 #13	ENSGT00940000159187 #14	ENSGT00940000160956 #15	ENSGT00950000183079.A.b.c.b #16	ENSGT00940000153716.A #18	ENSGT00390000008171 #17	ENSGT00500000045005 #19	ENSGT00390000003152.j #20	ENSGT00940000159161 #22	ENSGT00390000002376.d.d.a	ENSGT00940000153139.A #23	ENSGT00390000016366.g.a #24	ENSGT00940000161739 #25	ENSGT00390000015473 #26	ENSGT00390000007182 #27	ENSGT01030000235001.a.a	ENSGT01030000234513.B.b.j #28	ENSGT01030000235001.b	ENSGT01030000234513.B.b.i #29	ENSGT01050000244864.B.b #30	ENSGT00940000157028 #31	ENSGT00390000002565.u.b	ENSGT00940000162379 #32	ENSGT00940000157358 #33
Bos_b	ANCESTRAL SPECIES	33	ENSGT00730000111111	ENSGT00940000158055	ENSGT00530000063529.A #7	ENSGT00940000154103.a #8	ENSGT00940000154936.qb #10	ENSGT00730000111659 #9	ENSGT00950000183171.B #11	ENSGT00940000153259.a.a.b #12	ENSGT00390000016695 #13	ENSGT00940000159187 #14	ENSGT00940000160956 #15	ENSGT00950000183079.A.b.c.b #16	ENSGT00940000153716.A #18	ENSGT00390000008171 #17	ENSGT00500000045005 #19	ENSGT00940000159161 #22	ENSGT00390000002376.d.d.a	ENSGT00940000153139.A #23	ENSGT00390000016366.g.a #24	ENSGT00940000161739 #25	ENSGT00390000015473 #26	ENSGT00390000007182 #27	ENSGT01030000235001.a.a	ENSGT01030000234513.B.b.j #28	ENSGT01030000235001.b	ENSGT01030000234513.B.b.i #29	ENSGT01050000244864.B.b #30	ENSGT00940000157028 #31	ENSGT00390000002565.u.b	ENSGT00940000162379 #32	ENSGT00940000157358 #33
Cow	MODERN SPECIES	3	SPATA13 (ENSBTAG00000019545) #8	C1QTNF9 (ENSBTAG00000053310) #10	ENSBTAG00000051537 #9	MIPEP (ENSBTAG00000008888) #11	TNFRSF19 (ENSBTAG00000018300) #12	SACS (ENSBTAG00000001867) #13	SGCG (ENSBTAG00000001865) #14	FGF9 (ENSBTAG00000048237) #15	MICU2 (ENSBTAG00000015943) #16	ENSBTAG00000052696	ZDHHC20 (ENSBTAG00000006177) #18	MRPL57 (ENSBTAG00000003315) #17	SKA3 (ENSBTAG00000003314) #19	SAP18 (ENSBTAG00000018631) #20	ENSBTAG00000049776	LATS2 (ENSBTAG00000014406) #22	XPO4 (ENSBTAG00000003710) #23	ENSBTAG00000052435	IL17D (ENSBTAG00000025402) #25	IFT88 (ENSBTAG00000014286) #26	CRYL1 (ENSBTAG00000011726) #27	GJB6 (ENSBTAG00000038662) #28	ENSBTAG00000051110	ENSBTAG00000052099	GJB2 (ENSBTAG00000017425) #29	GJA3 (ENSBTAG00000020400) #30	ZMYM2 (ENSBTAG00000020403) #31	ENSBTAG00000052451	ENSBTAG00000025383	ZMYM5 (ENSBTAG00000007167) #32	PSPC1 (ENSBTAG00000003934) #33
Hybrid Bos Indicus	MODERN SPECIES	3	AMER2 (ENSBIXG00005008541) #7	SPATA13 (ENSBIXG00005008506) #8	ENSBIXG00005005901 #10	ENSBIXG00005006188 #9	MIPEP (ENSBIXG00005008422) #11	TNFRSF19 (ENSBIXG00005008407) #12	SACS (ENSBIXG00005008362) #13	SGCG (ENSBIXG00005000156) #14	FGF9 (ENSBIXG00005000140) #15	ZDHHC20 (ENSBIXG00005008261) #18	MICU2 (ENSBIXG00005008185) #16	MRPL57 (ENSBIXG00005008171) #17	SKA3 (ENSBIXG00005008150) #19	SAP18 (ENSBIXG00005008136) #20	ENSBIXG00005008125	LATS2 (ENSBIXG00005008114) #22	ENSBIXG00005008103	XPO4 (ENSBIXG00005008091) #23	ENSBIXG00005008070	ENSBIXG00005008063 #24	ENSBIXG00005008052 #25	IFT88 (ENSBIXG00005008020) #26	CRYL1 (ENSBIXG00005007964) #27	ENSBIXG00005000040	GJB6 (ENSBIXG00005000037) #28	ENSBIXG00005007931	GJB2 (ENSBIXG00005007908) #29	GJA3 (ENSBIXG00005007903) #30	ZMYM2 (ENSBIXG00005007869) #31	ENSBIXG00005029381	ENSBIXG00005029388 #32
Bos_a	ANCESTRAL SPECIES	19	ENSGT00940000158055	ENSGT00530000063529.A #7	ENSGT00940000154103.a #8	ENSGT00730000111659 #9	ENSGT00940000154936.qb #10	ENSGT00950000183171.B #11	ENSGT00940000153259.a.a.b #12	ENSGT00390000016695 #13	ENSGT00940000159187 #14	ENSGT00940000160956 #15	ENSGT00950000183079.A.b.c.b #16	ENSGT00940000153716.A #18	ENSGT00390000008171 #17	ENSGT00500000045005 #19	ENSGT00390000003152.j #20	ENSGT00940000159161 #22	ENSGT00390000002376.d.d.a	ENSGT00940000153139.A #23	ENSGT00390000016366.g.a #24	ENSGT00940000161739 #25	ENSGT00390000015473 #26	ENSGT00390000007182 #27	ENSGT01030000235001.a.a	ENSGT01030000234513.B.b.j #28	ENSGT01030000235001.b	ENSGT01030000234513.B.b.i #29	ENSGT01050000244864.B.b #30	ENSGT00940000157028 #31	ENSGT00390000002565.u.b	ENSGT00940000162379 #32	ENSGT00940000157358 #33
Domestic yak	MODERN SPECIES	6	ENSBGRG00000015156 #10	ENSBGRG00000015093	MIPEP (ENSBGRG00000014831) #11	TNFRSF19 (ENSBGRG00000014716) #12	ENSBGRG00000014659 #13	ENSBGRG00000014596 #13	SGCG (ENSBGRG00000014518) #14	ENSBGRG00000014493 #15	ENSBGRG00000014473 #15	MICU2 (ENSBGRG00000014230) #16	ZDHHC20 (ENSBGRG00000013917) #18	MRPL57 (ENSBGRG00000013887) #17	SKA3 (ENSBGRG00000013764) #19	ENSBGRG00000013740	SAP18 (ENSBGRG00000013663) #20	LATS2 (ENSBGRG00000013606) #22	ENSBGRG00000013582	XPO4 (ENSBGRG00000013073) #23	EEF1AKMT1 (ENSBGRG00000012982) #24	IL17D (ENSBGRG00000012943) #25	IFT88 (ENSBGRG00000012512) #26	CRYL1 (ENSBGRG00000012354) #27	ENSBGRG00000012312	ENSBGRG00000012298 #28	ENSBGRG00000012259	ENSBGRG00000012211 #28	GJB2 (ENSBGRG00000012195) #29	ENSBGRG00000012177	GJA3 (ENSBGRG00000012144) #30	ZMYM2 (ENSBGRG00000010306) #31	ENSBGRG00000010190
Wild yak	MODERN SPECIES	178									ENSBMUG00000019673 #13	SGCG (ENSBMUG00000019654) #14	FGF9 (ENSBMUG00000019641) #15	MICU2 (ENSBMUG00000019613) #16	ZDHHC20 (ENSBMUG00000019562) #18	SKA3 (ENSBMUG00000019447) #19	SAP18 (ENSBMUG00000019432) #20	LATS2 (ENSBMUG00000019351) #22	ENSBMUG00000019265	XPO4 (ENSBMUG00000019248) #23	ENSBMUG00000019205 #24	IFT88 (ENSBMUG00000019163) #26	CRYL1 (ENSBMUG00000019026) #27	ENSBMUG00000018992	GJB6 (ENSBMUG00000018983) #28	ENSBMUG00000018969	GJB2 (ENSBMUG00000018953) #29	ENSBMUG00000018949 #30	ZMYM2 (ENSBMUG00000018910) #31	ENSBMUG00000018817	ZMYM5 (ENSBMUG00000018795) #32	PSPC1 (ENSBMUG00000018742) #33	MPHOSPH8 (ENSBMUG00000018711) #34
American bison	MODERN SPECIES	3213	NUP58 (ENSBBBG00000013067)	MTMR6 (ENSBBBG00000002619)	ENSBBBG00000013118 #8	ENSBBBG00000008445 #9	ENSBBBG00000013148 #10	MIPEP (ENSBBBG00000013170) #11	TNFRSF19 (ENSBBBG00000002662) #12	SACS (ENSBBBG00000013206) #13	SGCG (ENSBBBG00000013218) #14	FGF9 (ENSBBBG00000006877) #15	MICU2 (ENSBBBG00000002673) #16	ZDHHC20 (ENSBBBG00000013302) #18	MRPL57 (ENSBBBG00000013311) #17	SKA3 (ENSBBBG00000013325) #19	SAP18 (ENSBBBG00000013341) #20	ENSBBBG00000013350 #22	XPO4 (ENSBBBG00000002724) #23	ENSBBBG00000002739 #24	IFT88 (ENSBBBG00000013422) #26	CRYL1 (ENSBBBG00000007652) #27	ENSBBBG00000013463	GJB6 (ENSBBBG00000013472) #28	ENSBBBG00000013475	GJB2 (ENSBBBG00000013478) #29	GJA3 (ENSBBBG00000013482) #30	ZMYM2 (ENSBBBG00000013541) #31	ENSBBBG00000002800	ENSBBBG00000013559 #32	PSPC1 (ENSBBBG00000007356) #33	MPHOSPH8 (ENSBBBG00000013583) #34	PARP4 (ENSBBBG00000013618) #35
Siberian musk deer	MODERN SPECIES	18	AMER2 (ENSMMSG00000003442) #7	ENSMMSG00000003459 #8	ENSMMSG00000003499 #10	ENSMMSG00000003514 #9	MIPEP (ENSMMSG00000003521) #11	TNFRSF19 (ENSMMSG00000003566) #12	ENSMMSG00000003601 #13	ENSMMSG00000003618 #13	SGCG (ENSMMSG00000003635) #14	FGF9 (ENSMMSG00000003647) #15	MICU2 (ENSMMSG00000003666) #16	ZDHHC20 (ENSMMSG00000003719) #18	MRPL57 (ENSMMSG00000003770) #17	SKA3 (ENSMMSG00000003777) #19	SAP18 (ENSMMSG00000003802) #20	LATS2 (ENSMMSG00000003821) #22	XPO4 (ENSMMSG00000003841) #23	EEF1AKMT1 (ENSMMSG00000003860) #24	IL17D (ENSMMSG00000003866) #25	IFT88 (ENSMMSG00000003885) #26	CRYL1 (ENSMMSG00000003971) #27	ENSMMSG00000003995	GJB6 (ENSMMSG00000004007) #28	GJB2 (ENSMMSG00000004017) #29	GJA3 (ENSMMSG00000004024) #30	ZMYM2 (ENSMMSG00000004047) #31	ZMYM5 (ENSMMSG00000004106) #32	PSPC1 (ENSMMSG00000004123) #33	MPHOSPH8 (ENSMMSG00000004166) #34	PARP4 (ENSMMSG00000004192) #35	CENPJ (ENSMMSG00000004259) #36
Yarkand deer	MODERN SPECIES	23	ENSCHYG00000020944 #7	SPATA13 (ENSCHYG00000021003) #8	ENSCHYG00000021480 #10	ENSCHYG00000021607 #9	MIPEP (ENSCHYG00000021677) #11	TNFRSF19 (ENSCHYG00000022186) #12	SACS (ENSCHYG00000022384) #13	SGCG (ENSCHYG00000022497) #14	ENSCHYG00000022553 #15	MICU2 (ENSCHYG00000022600) #16	ENSCHYG00000022747	ZDHHC20 (ENSCHYG00000022771) #18	MRPL57 (ENSCHYG00000022862) #17	ENSCHYG00000022879 #19	ENSCHYG00000022939 #20	LATS2 (ENSCHYG00000023033) #22	XPO4 (ENSCHYG00000023070) #23	EEF1AKMT1 (ENSCHYG00000023247) #24	IL17D (ENSCHYG00000023271) #25	IFT88 (ENSCHYG00000023350) #26	CRYL1 (ENSCHYG00000023667) #27	ENSCHYG00000023749	ENSCHYG00000023763	GJB6 (ENSCHYG00000023776) #28	GJB2 (ENSCHYG00000023789) #29	GJA3 (ENSCHYG00000023810) #30	ZMYM2 (ENSCHYG00000023855) #31	ZMYM5 (ENSCHYG00000024256) #32	PSPC1 (ENSCHYG00000024270) #33	MPHOSPH8 (ENSCHYG00000024302) #34	PARP4 (ENSCHYG00000024482) #35