Pecora	ANCESTRAL SPECIES	23	ENSGT00940000158055 #7	ENSGT00530000063529.A #8	ENSGT00940000154103.a #9	ENSGT00940000154936.qb #10	ENSGT00730000111659 #11	ENSGT00950000183171.B #12	ENSGT00940000153259.a.a.b #13	ENSGT00390000016695 #14	ENSGT00940000159187 #15	ENSGT00940000160956 #16	ENSGT00950000183079.A.b.c.b #17	ENSGT00940000153716.A #18	ENSGT00390000008171 #19	ENSGT00500000045005 #20	ENSGT00390000003152.j #21	ENSGT00940000159161 #22	ENSGT00940000153139.A #23	ENSGT00390000016366 #24	ENSGT00940000161739 #25	ENSGT00390000015473 #26	ENSGT00390000007182 #27	ENSGT01030000235001.a #28	ENSGT01030000234513.B.b.j #29	ENSGT01030000235001.b #30	ENSGT01030000234513.B.b.i #31	ENSGT01050000244864.B.b #32	ENSGT00940000157028 #33	ENSGT00940000162379 #34	ENSGT00940000157358 #35	ENSGT00730000111087 #36	ENSGT00940000160555 #37
Yarkand deer	MODERN SPECIES	23	ENSCHYG00000020944 #8	SPATA13 (ENSCHYG00000021003) #9	ENSCHYG00000021480 #10	ENSCHYG00000021607 #11	MIPEP (ENSCHYG00000021677) #12	TNFRSF19 (ENSCHYG00000022186) #13	SACS (ENSCHYG00000022384) #14	SGCG (ENSCHYG00000022497) #15	ENSCHYG00000022553 #16	MICU2 (ENSCHYG00000022600) #17	ENSCHYG00000022747	ZDHHC20 (ENSCHYG00000022771) #18	MRPL57 (ENSCHYG00000022862) #19	ENSCHYG00000022879 #20	ENSCHYG00000022939 #21	LATS2 (ENSCHYG00000023033) #22	XPO4 (ENSCHYG00000023070) #23	EEF1AKMT1 (ENSCHYG00000023247) #24	IL17D (ENSCHYG00000023271) #25	IFT88 (ENSCHYG00000023350) #26	CRYL1 (ENSCHYG00000023667) #27	ENSCHYG00000023749	ENSCHYG00000023763 #28	GJB6 (ENSCHYG00000023776) #29	GJB2 (ENSCHYG00000023789) #31	GJA3 (ENSCHYG00000023810) #32	ZMYM2 (ENSCHYG00000023855) #33	ZMYM5 (ENSCHYG00000024256) #34	PSPC1 (ENSCHYG00000024270) #35	MPHOSPH8 (ENSCHYG00000024302) #36	PARP4 (ENSCHYG00000024482) #37
Percora_a	ANCESTRAL SPECIES	25	ENSGT00940000158055 #7	ENSGT00530000063529.A #8	ENSGT00940000154103.a #9	ENSGT00940000154936.qb #10	ENSGT00730000111659 #11	ENSGT00950000183171.B #12	ENSGT00940000153259.a.a.b #13	ENSGT00390000016695 #14	ENSGT00940000159187 #15	ENSGT00940000160956 #16	ENSGT00950000183079.A.b.c.b #17	ENSGT00940000153716.A #18	ENSGT00390000008171 #19	ENSGT00500000045005 #20	ENSGT00390000003152.j #21	ENSGT00940000159161 #22	ENSGT00940000153139.A #23	ENSGT00390000016366 #24	ENSGT00940000161739 #25	ENSGT00390000015473 #26	ENSGT00390000007182 #27	ENSGT01030000235001.a #28	ENSGT01030000234513.B.b.j #29	ENSGT01030000235001.b #30	ENSGT01030000234513.B.b.i #31	ENSGT01050000244864.B.b #32	ENSGT00940000157028 #33	ENSGT00940000162379 #34	ENSGT00940000157358 #35	ENSGT00730000111087 #36	ENSGT00940000160555 #37
Siberian musk deer	MODERN SPECIES	18	AMER2 (ENSMMSG00000003442) #8	ENSMMSG00000003459 #9	ENSMMSG00000003499 #10	ENSMMSG00000003514 #11	MIPEP (ENSMMSG00000003521) #12	TNFRSF19 (ENSMMSG00000003566) #13	ENSMMSG00000003601 #14	ENSMMSG00000003618 #14	SGCG (ENSMMSG00000003635) #15	FGF9 (ENSMMSG00000003647) #16	MICU2 (ENSMMSG00000003666) #17	ZDHHC20 (ENSMMSG00000003719) #18	MRPL57 (ENSMMSG00000003770) #19	SKA3 (ENSMMSG00000003777) #20	SAP18 (ENSMMSG00000003802) #21	LATS2 (ENSMMSG00000003821) #22	XPO4 (ENSMMSG00000003841) #23	EEF1AKMT1 (ENSMMSG00000003860) #24	IL17D (ENSMMSG00000003866) #25	IFT88 (ENSMMSG00000003885) #26	CRYL1 (ENSMMSG00000003971) #27	ENSMMSG00000003995 #28	GJB6 (ENSMMSG00000004007) #29	GJB2 (ENSMMSG00000004017) #31	GJA3 (ENSMMSG00000004024) #32	ZMYM2 (ENSMMSG00000004047) #33	ZMYM5 (ENSMMSG00000004106) #34	PSPC1 (ENSMMSG00000004123) #35	MPHOSPH8 (ENSMMSG00000004166) #36	PARP4 (ENSMMSG00000004192) #37	CENPJ (ENSMMSG00000004259)
Bovidae	ANCESTRAL SPECIES	25	ENSGT00940000158055 #7	ENSGT00530000063529.A #8	ENSGT00940000154103.a #9	ENSGT00940000154936.qb #10	ENSGT00730000111659 #11	ENSGT00950000183171.B #12	ENSGT00940000153259.a.a.b #13	ENSGT00390000016695 #14	ENSGT00940000159187 #15	ENSGT00940000160956 #16	ENSGT00950000183079.A.b.c.b #17	ENSGT00940000153716.A #18	ENSGT00390000008171 #19	ENSGT00500000045005 #20	ENSGT00390000003152.j #21	ENSGT00940000159161 #22	ENSGT00940000153139.A #23	ENSGT00390000016366 #24	ENSGT00940000161739 #25	ENSGT00390000015473 #26	ENSGT00390000007182 #27	ENSGT01030000235001.a #28	ENSGT01030000234513.B.b.j #29	ENSGT01030000235001.b #30	ENSGT01030000234513.B.b.i #31	ENSGT01050000244864.B.b #32	ENSGT00940000157028 #33	ENSGT00940000162379 #34	ENSGT00940000157358 #35	ENSGT00730000111087 #36	ENSGT00940000160555 #37
Caprinae	ANCESTRAL SPECIES	28	ENSGT00530000063529.A #8	ENSGT00940000154103.a #9	ENSGT00940000154936.qb #10	ENSGT00730000111659 #11	ENSGT00950000183171.B #12	ENSGT00940000153259.a.a.b #13	ENSGT00390000016695 #14	ENSGT00940000159187 #15	ENSGT00940000160956 #16	ENSGT00950000183079.A.b.c.b #17	ENSGT00940000153716.A #18	ENSGT00390000008171.ab #19	ENSGT00390000008171.`b #19	ENSGT00500000045005.l #20	ENSGT00390000003152.j #21	ENSGT00940000159161 #22	ENSGT00940000153139.A #23	ENSGT00390000016366 #24	ENSGT00940000161739 #25	ENSGT00390000015473 #26	ENSGT00390000007182 #27	ENSGT01030000235001.a #28	ENSGT01030000234513.B.b.j #29	ENSGT01030000235001.b #30	ENSGT01030000234513.B.b.i #31	ENSGT01050000244864.B.b #32	ENSGT00940000157028 #33	ENSGT00940000162379 #34	ENSGT00940000157358 #35	ENSGT00730000111087 #36	ENSGT00940000160555 #37
Rambouillet Sheep	MODERN SPECIES	1	NUP58 (ENSOARG00020003279)	MTMR6 (ENSOARG00020003588) #7	AMER2 (ENSOARG00020003659) #8	ENSOARG00020003885 #10	ENSOARG00020003949 #11	MIPEP (ENSOARG00020003971) #12	TNFRSF19 (ENSOARG00020004054) #13	SACS (ENSOARG00020004146) #14	SGCG (ENSOARG00020004193) #15	FGF9 (ENSOARG00020004253) #16	MICU2 (ENSOARG00020004275) #17	ZDHHC20 (ENSOARG00020004328) #18	ENSOARG00020004438 #19	ENSOARG00020004447 #20	SAP18 (ENSOARG00020004477) #21	LATS2 (ENSOARG00020004530) #22	XPO4 (ENSOARG00020004563) #23	EEF1AKMT1 (ENSOARG00020004604) #24	IL17D (ENSOARG00020004623) #25	IFT88 (ENSOARG00020004679) #26	CRYL1 (ENSOARG00020004947) #27	ENSOARG00020004993 #28	GJB6 (ENSOARG00020005011) #29	ENSOARG00020005030 #30	GJB2 (ENSOARG00020005049) #31	GJA3 (ENSOARG00020005065) #32	ZMYM2 (ENSOARG00020005084) #33	ENSOARG00020005187	ZMYM5 (ENSOARG00020005220) #34	PSPC1 (ENSOARG00020005341) #35	ENSOARG00020005378
Goat	MODERN SPECIES	3	AMER2 (ENSCHIG00000002328) #8	SPATA13 (ENSCHIG00000023348) #9	ENSCHIG00000019907 #11	ENSCHIG00000014869 #10	MIPEP (ENSCHIG00000021861) #12	TNFRSF19 (ENSCHIG00000021901) #13	SACS (ENSCHIG00000021941) #14	SGCG (ENSCHIG00000010887) #15	FGF9 (ENSCHIG00000020738) #16	MICU2 (ENSCHIG00000019056) #17	ENSCHIG00000013087 #19	ZDHHC20 (ENSCHIG00000018849) #18	ENSCHIG00000017508 #20	SAP18 (ENSCHIG00000016828) #21	ENSCHIG00000020953	LATS2 (ENSCHIG00000020837) #22	XPO4 (ENSCHIG00000016203) #23	EEF1AKMT1 (ENSCHIG00000018520) #24	IL17D (ENSCHIG00000014106) #25	IFT88 (ENSCHIG00000020831) #26	CRYL1 (ENSCHIG00000020031) #27	GJB6 (ENSCHIG00000007375) #29	GJB2 (ENSCHIG00000004710) #31	GJA3 (ENSCHIG00000003023) #32	ZMYM2 (ENSCHIG00000011031) #33	ZMYM5 (ENSCHIG00000022250) #34	PSPC1 (ENSCHIG00000016708) #35	MPHOSPH8 (ENSCHIG00000020165) #36	PARP4 (ENSCHIG00000016066) #37	CENPJ (ENSCHIG00000004741)	RNF17 (ENSCHIG00000026716)
Bovinae	ANCESTRAL SPECIES	29	ENSGT00940000158055 #7	ENSGT00530000063529.A #8	ENSGT00940000154103.a #9	ENSGT00940000154936.qb #10	ENSGT00730000111659 #11	ENSGT00950000183171.B #12	ENSGT00940000153259.a.a.b #13	ENSGT00390000016695 #14	ENSGT00940000159187 #15	ENSGT00940000160956 #16	ENSGT00950000183079.A.b.c.b #17	ENSGT00940000153716.A #18	ENSGT00390000008171 #19	ENSGT00500000045005 #20	ENSGT00390000003152.j #21	ENSGT00940000159161 #22	ENSGT00940000153139.A #23	ENSGT00390000016366.g.a #24	ENSGT00940000161739 #25	ENSGT00390000015473 #26	ENSGT00390000007182 #27	ENSGT01030000235001.a #28	ENSGT01030000234513.B.b.j #29	ENSGT01030000235001.b #30	ENSGT01030000234513.B.b.i #31	ENSGT01050000244864.B.b #32	ENSGT00940000157028 #33	ENSGT00390000002565.u.b	ENSGT00940000162379 #34	ENSGT00940000157358 #35	ENSGT00730000111087 #36
Bos	ANCESTRAL SPECIES	28	ENSGT00940000158055 #7	ENSGT00530000063529.A #8	ENSGT00940000154103.a #9	ENSGT00940000154936.qb #10	ENSGT00730000111659 #11	ENSGT00950000183171.B #12	ENSGT00940000153259.a.a.b #13	ENSGT00390000016695 #14	ENSGT00940000159187 #15	ENSGT00940000160956 #16	ENSGT00950000183079.A.b.c.b #17	ENSGT00940000153716.A #18	ENSGT00390000008171 #19	ENSGT00500000045005 #20	ENSGT00390000003152.j #21	ENSGT00940000159161 #22	ENSGT00390000002376.d.d.a	ENSGT00940000153139.A #23	ENSGT00390000016366.g.a #24	ENSGT00940000161739 #25	ENSGT00390000015473 #26	ENSGT00390000007182 #27	ENSGT01030000235001.a.a #28	ENSGT01030000234513.B.b.j #29	ENSGT01030000235001.b #30	ENSGT01030000234513.B.b.i #31	ENSGT01050000244864.B.b #32	ENSGT00940000157028 #33	ENSGT00390000002565.u.b	ENSGT00940000162379 #34	ENSGT00940000157358 #35
Bos_b	ANCESTRAL SPECIES	33	ENSGT00730000111111	ENSGT00940000158055 #7	ENSGT00530000063529.A #8	ENSGT00940000154103.a #9	ENSGT00940000154936.qb #10	ENSGT00730000111659 #11	ENSGT00950000183171.B #12	ENSGT00940000153259.a.a.b #13	ENSGT00390000016695 #14	ENSGT00940000159187 #15	ENSGT00940000160956 #16	ENSGT00950000183079.A.b.c.b #17	ENSGT00940000153716.A #18	ENSGT00390000008171 #19	ENSGT00500000045005 #20	ENSGT00940000159161 #22	ENSGT00390000002376.d.d.a	ENSGT00940000153139.A #23	ENSGT00390000016366.g.a #24	ENSGT00940000161739 #25	ENSGT00390000015473 #26	ENSGT00390000007182 #27	ENSGT01030000235001.a.a #28	ENSGT01030000234513.B.b.j #29	ENSGT01030000235001.b #30	ENSGT01030000234513.B.b.i #31	ENSGT01050000244864.B.b #32	ENSGT00940000157028 #33	ENSGT00390000002565.u.b	ENSGT00940000162379 #34	ENSGT00940000157358 #35
Cow	MODERN SPECIES	3	SPATA13 (ENSBTAG00000019545) #9	C1QTNF9 (ENSBTAG00000053310) #10	ENSBTAG00000051537 #11	MIPEP (ENSBTAG00000008888) #12	TNFRSF19 (ENSBTAG00000018300) #13	SACS (ENSBTAG00000001867) #14	SGCG (ENSBTAG00000001865) #15	FGF9 (ENSBTAG00000048237) #16	MICU2 (ENSBTAG00000015943) #17	ENSBTAG00000052696	ZDHHC20 (ENSBTAG00000006177) #18	MRPL57 (ENSBTAG00000003315) #19	SKA3 (ENSBTAG00000003314) #20	SAP18 (ENSBTAG00000018631) #21	ENSBTAG00000049776	LATS2 (ENSBTAG00000014406) #22	XPO4 (ENSBTAG00000003710) #23	ENSBTAG00000052435	IL17D (ENSBTAG00000025402) #25	IFT88 (ENSBTAG00000014286) #26	CRYL1 (ENSBTAG00000011726) #27	GJB6 (ENSBTAG00000038662) #29	ENSBTAG00000051110 #28	ENSBTAG00000052099 #30	GJB2 (ENSBTAG00000017425) #31	GJA3 (ENSBTAG00000020400) #32	ZMYM2 (ENSBTAG00000020403) #33	ENSBTAG00000052451	ENSBTAG00000025383	ZMYM5 (ENSBTAG00000007167) #34	PSPC1 (ENSBTAG00000003934) #35
Hybrid Bos Indicus	MODERN SPECIES	3	AMER2 (ENSBIXG00005008541) #8	SPATA13 (ENSBIXG00005008506) #9	ENSBIXG00005005901 #10	ENSBIXG00005006188 #11	MIPEP (ENSBIXG00005008422) #12	TNFRSF19 (ENSBIXG00005008407) #13	SACS (ENSBIXG00005008362) #14	SGCG (ENSBIXG00005000156) #15	FGF9 (ENSBIXG00005000140) #16	ZDHHC20 (ENSBIXG00005008261) #18	MICU2 (ENSBIXG00005008185) #17	MRPL57 (ENSBIXG00005008171) #19	SKA3 (ENSBIXG00005008150) #20	SAP18 (ENSBIXG00005008136) #21	ENSBIXG00005008125	LATS2 (ENSBIXG00005008114) #22	ENSBIXG00005008103	XPO4 (ENSBIXG00005008091) #23	ENSBIXG00005008070	ENSBIXG00005008063 #24	ENSBIXG00005008052 #25	IFT88 (ENSBIXG00005008020) #26	CRYL1 (ENSBIXG00005007964) #27	ENSBIXG00005000040 #28	GJB6 (ENSBIXG00005000037) #29	ENSBIXG00005007931 #30	GJB2 (ENSBIXG00005007908) #31	GJA3 (ENSBIXG00005007903) #32	ZMYM2 (ENSBIXG00005007869) #33	ENSBIXG00005029381	ENSBIXG00005029388 #34
Bos_a	ANCESTRAL SPECIES	19	ENSGT00940000158055 #7	ENSGT00530000063529.A #8	ENSGT00940000154103.a #9	ENSGT00730000111659 #11	ENSGT00940000154936.qb #10	ENSGT00950000183171.B #12	ENSGT00940000153259.a.a.b #13	ENSGT00390000016695 #14	ENSGT00940000159187 #15	ENSGT00940000160956 #16	ENSGT00950000183079.A.b.c.b #17	ENSGT00940000153716.A #18	ENSGT00390000008171 #19	ENSGT00500000045005 #20	ENSGT00390000003152.j #21	ENSGT00940000159161 #22	ENSGT00390000002376.d.d.a	ENSGT00940000153139.A #23	ENSGT00390000016366.g.a #24	ENSGT00940000161739 #25	ENSGT00390000015473 #26	ENSGT00390000007182 #27	ENSGT01030000235001.a.a #28	ENSGT01030000234513.B.b.j #29	ENSGT01030000235001.b #30	ENSGT01030000234513.B.b.i #31	ENSGT01050000244864.B.b #32	ENSGT00940000157028 #33	ENSGT00390000002565.u.b	ENSGT00940000162379 #34	ENSGT00940000157358 #35
Domestic yak	MODERN SPECIES	6	ENSBGRG00000015156 #10	ENSBGRG00000015093	MIPEP (ENSBGRG00000014831) #12	TNFRSF19 (ENSBGRG00000014716) #13	ENSBGRG00000014659 #14	ENSBGRG00000014596 #14	SGCG (ENSBGRG00000014518) #15	ENSBGRG00000014493 #16	ENSBGRG00000014473 #16	MICU2 (ENSBGRG00000014230) #17	ZDHHC20 (ENSBGRG00000013917) #18	MRPL57 (ENSBGRG00000013887) #19	SKA3 (ENSBGRG00000013764) #20	ENSBGRG00000013740	SAP18 (ENSBGRG00000013663) #21	LATS2 (ENSBGRG00000013606) #22	ENSBGRG00000013582	XPO4 (ENSBGRG00000013073) #23	EEF1AKMT1 (ENSBGRG00000012982) #24	IL17D (ENSBGRG00000012943) #25	IFT88 (ENSBGRG00000012512) #26	CRYL1 (ENSBGRG00000012354) #27	ENSBGRG00000012312 #28	ENSBGRG00000012298 #29	ENSBGRG00000012259 #28	ENSBGRG00000012211 #29	GJB2 (ENSBGRG00000012195) #31	ENSBGRG00000012177 #30	GJA3 (ENSBGRG00000012144) #32	ZMYM2 (ENSBGRG00000010306) #33	ENSBGRG00000010190
Wild yak	MODERN SPECIES	178									ENSBMUG00000019673 #14	SGCG (ENSBMUG00000019654) #15	FGF9 (ENSBMUG00000019641) #16	MICU2 (ENSBMUG00000019613) #17	ZDHHC20 (ENSBMUG00000019562) #18	SKA3 (ENSBMUG00000019447) #20	SAP18 (ENSBMUG00000019432) #21	LATS2 (ENSBMUG00000019351) #22	ENSBMUG00000019265	XPO4 (ENSBMUG00000019248) #23	ENSBMUG00000019205 #24	IFT88 (ENSBMUG00000019163) #26	CRYL1 (ENSBMUG00000019026) #27	ENSBMUG00000018992 #28	GJB6 (ENSBMUG00000018983) #29	ENSBMUG00000018969 #30	GJB2 (ENSBMUG00000018953) #31	ENSBMUG00000018949 #32	ZMYM2 (ENSBMUG00000018910) #33	ENSBMUG00000018817	ZMYM5 (ENSBMUG00000018795) #34	PSPC1 (ENSBMUG00000018742) #35	MPHOSPH8 (ENSBMUG00000018711) #36
American bison	MODERN SPECIES	3213	NUP58 (ENSBBBG00000013067)	MTMR6 (ENSBBBG00000002619) #7	ENSBBBG00000013118 #9	ENSBBBG00000008445 #11	ENSBBBG00000013148 #10	MIPEP (ENSBBBG00000013170) #12	TNFRSF19 (ENSBBBG00000002662) #13	SACS (ENSBBBG00000013206) #14	SGCG (ENSBBBG00000013218) #15	FGF9 (ENSBBBG00000006877) #16	MICU2 (ENSBBBG00000002673) #17	ZDHHC20 (ENSBBBG00000013302) #18	MRPL57 (ENSBBBG00000013311) #19	SKA3 (ENSBBBG00000013325) #20	SAP18 (ENSBBBG00000013341) #21	ENSBBBG00000013350 #22	XPO4 (ENSBBBG00000002724) #23	ENSBBBG00000002739 #24	IFT88 (ENSBBBG00000013422) #26	CRYL1 (ENSBBBG00000007652) #27	ENSBBBG00000013463 #28	GJB6 (ENSBBBG00000013472) #29	ENSBBBG00000013475 #30	GJB2 (ENSBBBG00000013478) #31	GJA3 (ENSBBBG00000013482) #32	ZMYM2 (ENSBBBG00000013541) #33	ENSBBBG00000002800	ENSBBBG00000013559 #34	PSPC1 (ENSBBBG00000007356) #35	MPHOSPH8 (ENSBBBG00000013583) #36	PARP4 (ENSBBBG00000013618) #37