Euteleostomi	ANCESTRAL SPECIES	621														ENSGT00390000010641 #19	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT01100000263492.b.b.b.a.b.a	ENSGT00390000001289.a #24	ENSGT00390000011766 #25
Sarcopterygii	ANCESTRAL SPECIES	606														ENSGT00390000010641 #19	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25
Tetrapoda	ANCESTRAL SPECIES	317														ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23
Amniota	ANCESTRAL SPECIES	81											ENSGT00530000063359.B #12	ENSGT00940000163889 #17	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00990000203796	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Mammalia	ANCESTRAL SPECIES	83	ENSGT01060000248595.b.a.b.a	ENSGT00940000161379	ENSGT00390000009663	ENSGT00390000009899.a.d	ENSGT00940000156574.C	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00530000063359.B #12	ENSGT00940000155904 #14	ENSGT00940000168541	ENSGT00940000163889 #17	ENSGT00390000010641 #19	ENSGT00940000163435	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00990000203796	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36
Theria	ANCESTRAL SPECIES	8	ENSGT01060000248595.b.a.b.a	ENSGT00940000161379	ENSGT00390000009663	ENSGT00390000009899.a.d	ENSGT00940000156574.C	ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00530000063359.B #12	ENSGT00940000155904 #14	ENSGT00940000168541	ENSGT00940000163889 #17	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Eutheria	ANCESTRAL SPECIES	3	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT01100000264273	ENSGT00940000163374	ENSGT00940000163889 #17	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT01100000264273	ENSGT00940000163374	ENSGT00940000163889 #17	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Primates	ANCESTRAL SPECIES		ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Haplorrhini	ANCESTRAL SPECIES		ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Simiiformes	ANCESTRAL SPECIES		ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000163889 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000163889 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Hominidae	ANCESTRAL SPECIES	1	ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000163889 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Homo/Pan/Gorilla group	DUPLICATION
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	8	ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000163889 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334.i #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a.b #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000163889 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334.i #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a.b #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Pan	ANCESTRAL SPECIES	1	ENSGT00910000148520 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00390000005254.j #13	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000163889 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334.i #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a.b #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Chimpanzee	MODERN SPECIES	2	ENSPTRG00000051044 #7	CHKA (ENSPTRG00000003980) #8	TCIRG1 (ENSPTRG00000003979) #9	NDUFS8 (ENSPTRG00000003978) #10	ALDH3B1 (ENSPTRG00000051435) #11	UNC93B1 (ENSPTRG00000003975) #12	ENSPTRG00000044434 #13	ALDH3B2 (ENSPTRG00000003974) #14	ACY3 (ENSPTRG00000003973) #15	TBX10 (ENSPTRG00000003972) #16	NUDT8 (ENSPTRG00000003971) #17	DOC2G (ENSPTRG00000052755) #18	NDUFV1 (ENSPTRG00000003969) #19	GSTP1 (ENSPTRG00000003968) #20	CABP2 (ENSPTRG00000003967) #21	CDK2AP2 (ENSPTRG00000003966) #22	PITPNM1 (ENSPTRG00000003965) #23	AIP (ENSPTRG00000003964) #24	TMEM134 (ENSPTRG00000003963) #25	CABP4 (ENSPTRG00000050164) #26	GPR152 (ENSPTRG00000003960) #27	CORO1B (ENSPTRG00000003959) #28	PTPRCAP (ENSPTRG00000033878) #29	RPS6KB2 (ENSPTRG00000003957) #30	CARNS1 (ENSPTRG00000028514) #31	TBC1D10C (ENSPTRG00000003954) #32	PPP1CA (ENSPTRG00000005449) #33	RAD9A (ENSPTRG00000044525) #34	CLCF1 (ENSPTRG00000047312) #35	POLD4 (ENSPTRG00000003950) #36	SSH3 (ENSPTRG00000003949) #37
Bonobo	MODERN SPECIES	2	KMT5B (ENSPPAG00000038672)	ENSPPAG00000036484 #7	CHKA (ENSPPAG00000037771) #8	TCIRG1 (ENSPPAG00000030122) #9	NDUFS8 (ENSPPAG00000039231) #10	ALDH3B1 (ENSPPAG00000030155) #11	UNC93B1 (ENSPPAG00000031688) #12	ENSPPAG00000027946 ##13	ALDH3B2 (ENSPPAG00000032213) #14	ACY3 (ENSPPAG00000031478) #15	TBX10 (ENSPPAG00000030171) #16	NUDT8 (ENSPPAG00000043158) #17	NDUFV1 (ENSPPAG00000043544) #19	GSTP1 (ENSPPAG00000043169) #20	ENSPPAG00000043180 #21	CDK2AP2 (ENSPPAG00000043090) #22	PITPNM1 (ENSPPAG00000044125) #23	AIP (ENSPPAG00000026775) #24	TMEM134 (ENSPPAG00000038698) #25	CABP4 (ENSPPAG00000031081) #26	GPR152 (ENSPPAG00000008770) #27	CORO1B (ENSPPAG00000030008) #28	PTPRCAP (ENSPPAG00000044074) #29	RPS6KB2 (ENSPPAG00000006795) #30	CARNS1 (ENSPPAG00000032452) #31	TBC1D10C (ENSPPAG00000042701) #32	PPP1CA (ENSPPAG00000023894) #33	RAD9A (ENSPPAG00000031016) #34	ENSPPAG00000035536 #35	POLD4 (ENSPPAG00000035704) #36	SSH3 (ENSPPAG00000016898) #37
Human	MODERN SPECIES	2	LRP5 (ENSG00000162337)	C11orf24 (ENSG00000171067)	KMT5B (ENSG00000110066)	CHKA (ENSG00000110721) #8	TCIRG1 (ENSG00000110719) #9	NDUFS8 (ENSG00000110717) #10	ALDH3B1 (ENSG00000006534) #11	UNC93B1 (ENSG00000110057) #12	ALDH3B2 (ENSG00000132746) #14	ACY3 (ENSG00000132744) #15	TBX10 (ENSG00000167800) #16	NUDT8 (ENSG00000167799) #17	NDUFV1 (ENSG00000167792) #19	GSTP1 (ENSG00000084207) #20	CABP2 (ENSG00000167791) #21	CDK2AP2 (ENSG00000167797) #22	PITPNM1 (ENSG00000110697) #23	AIP (ENSG00000110711) #24	TMEM134 (ENSG00000172663) #25	CABP4 (ENSG00000175544) #26	GPR152 (ENSG00000175514) #27	CORO1B (ENSG00000172725) #28	PTPRCAP (ENSG00000213402) #29	RPS6KB2 (ENSG00000175634) #30	CARNS1 (ENSG00000172508) #31	TBC1D10C (ENSG00000175463) #32	PPP1CA (ENSG00000172531) #33	CLCF1 (ENSG00000175505) #35	ENSG00000256514	POLD4 (ENSG00000175482) #36	RAD9A (ENSG00000172613) #34
Gorilla	MODERN SPECIES	2	KMT5B (ENSGGOG00000004122)	TCIRG1 (ENSGGOG00000005005) #9	NDUFS8 (ENSGGOG00000005001) #10	ALDH3B1 (ENSGGOG00000004995) #11	ENSGGOG00000025959 #12	ENSGGOG00000003630	ENSGGOG00000038633 #13	ALDH3B2 (ENSGGOG00000015729) #14	ACY3 (ENSGGOG00000011979) #15	TBX10 (ENSGGOG00000011961) #16	NUDT8 (ENSGGOG00000011953) #17	ENSGGOG00000023590 #18	NDUFV1 (ENSGGOG00000011943) #19	GSTP1 (ENSGGOG00000013849) #20	ENSGGOG00000010165 #21	CDK2AP2 (ENSGGOG00000010159) #22	PITPNM1 (ENSGGOG00000010148) #23	AIP (ENSGGOG00000010142) #24	TMEM134 (ENSGGOG00000042077) #25	CABP4 (ENSGGOG00000010025) #26	GPR152 (ENSGGOG00000010019) #27	CORO1B (ENSGGOG00000010013) #28	PTPRCAP (ENSGGOG00000010011) #29	RPS6KB2 (ENSGGOG00000009999) #30	CARNS1 (ENSGGOG00000009995) #31	TBC1D10C (ENSGGOG00000009988) #32	PPP1CA (ENSGGOG00000009981) #33	ENSGGOG00000039742 ##34	RAD9A (ENSGGOG00000009974) #34	ENSGGOG00000008219 #35	POLD4 (ENSGGOG00000016028) #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES																	ENSGT00940000160334.j ##22
Homo/Pan group	ANCESTRAL SPECIES																	ENSGT00940000160334.j ##22
Pan	ANCESTRAL SPECIES																	ENSGT00940000160334.j ##22
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	11	ID1 (ENSPTRG00000013357)	ENSPTRG00000047072	ENSPTRG00000013356	REM1 (ENSPTRG00000013354)	DEFB124 (ENSPTRG00000013353)	DEFB123 (ENSPTRG00000013352)	DEFB121 (ENSPTRG00000030595)	DEFB119 (ENSPTRG00000013351)	DEFB118 (ENSPTRG00000045857)	DEFB116 (ENSPTRG00000032541)	ENSPTRG00000047609	DEFB115 (ENSPTRG00000033694)	ENSPTRG00000047765	ENSPTRG00000052363	ENSPTRG00000013348	ENSPTRG00000046147 ##22	ENSPTRG00000050144	ENSPTRG00000051131	ENSPTRG00000046440	ENSPTRG00000051273	ENSPTRG00000044519	ENSPTRG00000043041	ENSPTRG00000043123	ENSPTRG00000046023	ENSPTRG00000048366	ZNF337 (ENSPTRG00000013344)	NANP (ENSPTRG00000044350)	NINL (ENSPTRG00000013342)	GINS1 (ENSPTRG00000050964)	ABHD12 (ENSPTRG00000013340)	PYGB (ENSPTRG00000049662)
Chimpanzee	MODERN SPECIES	939																ENSPTRG00000051484 ##22
Orangutan	MODERN SPECIES	2	PPP6R3 (ENSPPYG00000002970)	LRP5 (ENSPPYG00000036218)	C11orf24 (ENSPPYG00000002972)	KMT5B (ENSPPYG00000002973)	CHKA (ENSPPYG00000002974) #8	NDUFS8 (ENSPPYG00000002976) #10	ALDH3B1 (ENSPPYG00000002977) #11	UNC93B1 (ENSPPYG00000020003) #12	ALDH3B2 (ENSPPYG00000038703) #14	ACY3 (ENSPPYG00000002980) #15	TBX10 (ENSPPYG00000002981) #16	NUDT8 (ENSPPYG00000029677) #17	NDUFV1 (ENSPPYG00000002983) #19	GSTP1 (ENSPPYG00000002985) #20	CABP2 (ENSPPYG00000002986) #21	CDK2AP2 (ENSPPYG00000002987) #22	PITPNM1 (ENSPPYG00000002988) #23	AIP (ENSPPYG00000002989) #24	TMEM134 (ENSPPYG00000004100) #25	CABP4 (ENSPPYG00000002990) #26	GPR152 (ENSPPYG00000002991) #27	CORO1B (ENSPPYG00000002992) #28	PTPRCAP (ENSPPYG00000037728) #29	RPS6KB2 (ENSPPYG00000002993) #30	CARNS1 (ENSPPYG00000029387) #31	TBC1D10C (ENSPPYG00000002994) #32	PPP1CA (ENSPPYG00000002995) #33	RAD9A (ENSPPYG00000002996) #34	CLCF1 (ENSPPYG00000036168) #35	ENSPPYG00000034141	SSH3 (ENSPPYG00000002998) #37
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	19	LRP5 (ENSNLEG00000006550)	C11orf24 (ENSNLEG00000006549)	KMT5B (ENSNLEG00000033680)	CHKA (ENSNLEG00000006538) #8	TCIRG1 (ENSNLEG00000006527) #9	NDUFS8 (ENSNLEG00000006525) #10	ALDH3B1 (ENSNLEG00000006517) #11	UNC93B1 (ENSNLEG00000006504) #12	ALDH3B2 (ENSNLEG00000006499) #14	ACY3 (ENSNLEG00000006494) #15	ENSNLEG00000006493 #16	ENSNLEG00000028816 #18	NDUFV1 (ENSNLEG00000006458) #19	ENSNLEG00000006448	ENSNLEG00000006441 #21	CDK2AP2 (ENSNLEG00000006438) #22	PITPNM1 (ENSNLEG00000026976) #23	AIP (ENSNLEG00000006435) #24	TMEM134 (ENSNLEG00000006430) #25	CABP4 (ENSNLEG00000006425) #26	GPR152 (ENSNLEG00000018914) #27	CORO1B (ENSNLEG00000006399) #28	PTPRCAP (ENSNLEG00000006397) #29	RPS6KB2 (ENSNLEG00000006392) #30	CARNS1 (ENSNLEG00000006317) #31	TBC1D10C (ENSNLEG00000006381) #32	PPP1CA (ENSNLEG00000006360) #33	RAD9A (ENSNLEG00000006355) #34	ENSNLEG00000006348 #35	ENSNLEG00000029224	SSH3 (ENSNLEG00000006321) #37
Gibbon	MODERN SPECIES	1	DLX6 (ENSNLEG00000016008)	ENSNLEG00000016010	SDHAF3 (ENSNLEG00000016014)	TAC1 (ENSNLEG00000016015)	ASNS (ENSNLEG00000016044)	ENSNLEG00000033587	C1GALT1 (ENSNLEG00000016087)	COL28A1 (ENSNLEG00000016093)	MIOS (ENSNLEG00000016134)	RPA3 (ENSNLEG00000033298)	UMAD1 (ENSNLEG00000016155)	ENSNLEG00000035067	ENSNLEG00000016158	ICA1 (ENSNLEG00000016162)	NXPH1 (ENSNLEG00000016182)	ENSNLEG00000032207 #22	ENSNLEG00000033241	PHF14 (ENSNLEG00000016184)	THSD7A (ENSNLEG00000016197)	TMEM106B (ENSNLEG00000016225)	VWDE (ENSNLEG00000016235)	ENSNLEG00000028754	ENSNLEG00000035206	SCIN (ENSNLEG00000016265)	ARL4A (ENSNLEG00000016295)	ETV1 (ENSNLEG00000016296)	DGKB (ENSNLEG00000016331)	AGMO (ENSNLEG00000016359)	MEOX2 (ENSNLEG00000016373)	CRPPA (ENSNLEG00000016377)	ENSNLEG00000031958
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00390000009529.b.a	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000163889 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Rhinopithecus	ANCESTRAL SPECIES	1	ENSGT00390000009529.b.a	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000163889 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Golden snub-nosed monkey	MODERN SPECIES	1279	C11orf24 (ENSRROG00000027402)	KMT5B (ENSRROG00000045691)	CHKA (ENSRROG00000016904) #8	TCIRG1 (ENSRROG00000035211) #9	NDUFS8 (ENSRROG00000035645) #10	ALDH3B1 (ENSRROG00000035472) #11	UNC93B1 (ENSRROG00000012536) #12	ALDH3B2 (ENSRROG00000030687) #14	ACY3 (ENSRROG00000039646) #15	TBX10 (ENSRROG00000039702) #16	NUDT8 (ENSRROG00000037097) #17	ENSRROG00000026586 #18	NDUFV1 (ENSRROG00000037664) #19	GSTP1 (ENSRROG00000027191) #20	CABP2 (ENSRROG00000037183) #21	CDK2AP2 (ENSRROG00000043366) #22	PITPNM1 (ENSRROG00000007043) #23	AIP (ENSRROG00000045104) #24	TMEM134 (ENSRROG00000040406) #25	CABP4 (ENSRROG00000039803) #26	CORO1B (ENSRROG00000039319) #28	PTPRCAP (ENSRROG00000015187) #29	RPS6KB2 (ENSRROG00000044662) #30	CARNS1 (ENSRROG00000005925) #31	TBC1D10C (ENSRROG00000019804) #32	PPP1CA (ENSRROG00000039846) #33	RAD9A (ENSRROG00000035222) #34	CLCF1 (ENSRROG00000045504) #35	POLD4 (ENSRROG00000037792) #36	SSH3 (ENSRROG00000036044) #37	ANKRD13D (ENSRROG00000041027)
Black snub-nosed monkey	MODERN SPECIES	1876	ENSRBIG00000037386	KMT5B (ENSRBIG00000037823)	CHKA (ENSRBIG00000024191) #8	TCIRG1 (ENSRBIG00000036654) #9	NDUFS8 (ENSRBIG00000026286) #10	ALDH3B1 (ENSRBIG00000031620) #11	UNC93B1 (ENSRBIG00000040314) #12	ALDH3B2 (ENSRBIG00000030727) #14	ACY3 (ENSRBIG00000001203) #15	TBX10 (ENSRBIG00000031114) #16	NUDT8 (ENSRBIG00000039414) #17	ENSRBIG00000031438 #18	NDUFV1 (ENSRBIG00000038931) #19	GSTP1 (ENSRBIG00000041246) #20	CABP2 (ENSRBIG00000042812) #21	CDK2AP2 (ENSRBIG00000010171) #22	PITPNM1 (ENSRBIG00000011676) #23	AIP (ENSRBIG00000036498) #24	TMEM134 (ENSRBIG00000030826) #25	CABP4 (ENSRBIG00000042584) #26	GPR152 (ENSRBIG00000041858) #27	CORO1B (ENSRBIG00000043610) #28	PTPRCAP (ENSRBIG00000044684) #29	RPS6KB2 (ENSRBIG00000036100) #30	CARNS1 (ENSRBIG00000040033) #31	TBC1D10C (ENSRBIG00000032877) #32	PPP1CA (ENSRBIG00000043947) #33	RAD9A (ENSRBIG00000032418) #34	CLCF1 (ENSRBIG00000029063) #35	POLD4 (ENSRBIG00000036506) #36	ENSRBIG00000029788
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000163889 #17	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Vervet Monkey	MODERN SPECIES		ENSCSAG00000008972	KMT5B (ENSCSAG00000008964)	CHKA (ENSCSAG00000008953) #8	TCIRG1 (ENSCSAG00000008911) #9	NDUFS8 (ENSCSAG00000008821) #10	ENSCSAG00000008797 ##14	UNC93B1 (ENSCSAG00000008748) #12	ALDH3B2 (ENSCSAG00000008743) #14	ACY3 (ENSCSAG00000008735) #15	TBX10 (ENSCSAG00000008726) #16	ENSCSAG00000008710	ENSCSAG00000008700 #18	NDUFV1 (ENSCSAG00000008693) #19	GSTP1 (ENSCSAG00000008684) #20	CABP2 (ENSCSAG00000008676) #21	CDK2AP2 (ENSCSAG00000008667) #22	PITPNM1 (ENSCSAG00000008662) #23	AIP (ENSCSAG00000008652) #24	TMEM134 (ENSCSAG00000008641) #25	CABP4 (ENSCSAG00000008624) #26	GPR152 (ENSCSAG00000018962) #27	CORO1B (ENSCSAG00000008604) #28	PTPRCAP (ENSCSAG00000019165) #29	RPS6KB2 (ENSCSAG00000008598) #30	CARNS1 (ENSCSAG00000008580) #31	TBC1D10C (ENSCSAG00000008558) #32	PPP1CA (ENSCSAG00000008548) #33	RAD9A (ENSCSAG00000008542) #34	CLCF1 (ENSCSAG00000008530) #35	POLD4 (ENSCSAG00000008521) #36	SSH3 (ENSCSAG00000008510) #37
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000163889 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Macaca	ANCESTRAL SPECIES	2	ENSGT00390000009529.b.a	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000163889 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Pig-tailed macaque	MODERN SPECIES	433	ENSMNEG00000035330	KMT5B (ENSMNEG00000028922)	CHKA (ENSMNEG00000041615) #8	TCIRG1 (ENSMNEG00000044486) #9	NDUFS8 (ENSMNEG00000029160) #10	ENSMNEG00000044884 ##14	UNC93B1 (ENSMNEG00000042693) #12	ALDH3B2 (ENSMNEG00000042334) #14	ACY3 (ENSMNEG00000041493) #15	TBX10 (ENSMNEG00000032749) #16	NUDT8 (ENSMNEG00000041484) #17	ENSMNEG00000033340 #18	NDUFV1 (ENSMNEG00000041086) #19	GSTP1 (ENSMNEG00000044300) #20	CABP2 (ENSMNEG00000045390) #21	CDK2AP2 (ENSMNEG00000042636) #22	PITPNM1 (ENSMNEG00000043351) #23	AIP (ENSMNEG00000039995) #24	TMEM134 (ENSMNEG00000041551) #25	CABP4 (ENSMNEG00000032138) #26	GPR152 (ENSMNEG00000030403) #27	CORO1B (ENSMNEG00000044473) #28	PTPRCAP (ENSMNEG00000043708) #29	RPS6KB2 (ENSMNEG00000032247) #30	CARNS1 (ENSMNEG00000038393) #31	TBC1D10C (ENSMNEG00000031857) #32	PPP1CA (ENSMNEG00000042253) #33	CLCF1 (ENSMNEG00000034658) #35	POLD4 (ENSMNEG00000013342) #36	RAD9A (ENSMNEG00000043395) #34	SSH3 (ENSMNEG00000031930) #37
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00390000009529.b.a	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000163889 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00940000173013	ENSGT00390000005096 #36
Rhesus	MODERN SPECIES	5	KMT5B (ENSMMUG00000014237)	CHKA (ENSMMUG00000023192) #8	TCIRG1 (ENSMMUG00000023190) #9	NDUFS8 (ENSMMUG00000023189) #10	ALDH3B1 (ENSMMUG00000023188) ##14	UNC93B1 (ENSMMUG00000023184) #12	ALDH3B2 (ENSMMUG00000018533) #14	ACY3 (ENSMMUG00000039824) #15	TBX10 (ENSMMUG00000056105) #16	NUDT8 (ENSMMUG00000042611) #17	ENSMMUG00000062171	DOC2G (ENSMMUG00000018527) #18	NDUFV1 (ENSMMUG00000018526) #19	GSTP1 (ENSMMUG00000018524) #20	CABP2 (ENSMMUG00000011828) #21	CDK2AP2 (ENSMMUG00000057395) #22	PITPNM1 (ENSMMUG00000011821) #23	AIP (ENSMMUG00000011817) #24	TMEM134 (ENSMMUG00000005493) #25	CABP4 (ENSMMUG00000052347) #26	GPR152 (ENSMMUG00000005489) #27	ENSMMUG00000053378	CORO1B (ENSMMUG00000005488) #28	PTPRCAP (ENSMMUG00000005486) #29	RPS6KB2 (ENSMMUG00000005483) #30	CARNS1 (ENSMMUG00000005480) #31	TBC1D10C (ENSMMUG00000017280) #32	PPP1CA (ENSMMUG00000017278) #33	RAD9A (ENSMMUG00000017275) #34	POLD4 (ENSMMUG00000004523) #36	SSH3 (ENSMMUG00000015932) #37
Crab-eating macaque	MODERN SPECIES	5	ENSMFAG00000008768	KMT5B (ENSMFAG00000030851)	CHKA (ENSMFAG00000032927) #8	TCIRG1 (ENSMFAG00000030577) #9	NDUFS8 (ENSMFAG00000035405) #10	ENSMFAG00000001507 ##14	UNC93B1 (ENSMFAG00000043671) #12	ALDH3B2 (ENSMFAG00000044295) #14	ACY3 (ENSMFAG00000046339) #15	TBX10 (ENSMFAG00000007056) #16	NDUFV1 (ENSMFAG00000038730) #19	ENSMFAG00000061940	ENSMFAG00000051463 #17	GSTP1 (ENSMFAG00000032564) #20	CABP2 (ENSMFAG00000003212) #21	CDK2AP2 (ENSMFAG00000033158) #22	PITPNM1 (ENSMFAG00000046144) #23	AIP (ENSMFAG00000034062) #24	TMEM134 (ENSMFAG00000030408) #25	ENSMFAG00000056898	CABP4 (ENSMFAG00000038440) #26	CORO1B (ENSMFAG00000037995) #28	RPS6KB2 (ENSMFAG00000031507) #30	ENSMFAG00000051490	CARNS1 (ENSMFAG00000046293) #31	TBC1D10C (ENSMFAG00000045050) #32	PPP1CA (ENSMFAG00000001854) #33	RAD9A (ENSMFAG00000041314) #34	ENSMFAG00000053215	CLCF1 (ENSMFAG00000039712) #35	ENSMFAG00000045971
Cercopithecinae_b	ANCESTRAL SPECIES	16	ENSGT00940000153377.B.e	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000163889 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Olive baboon	MODERN SPECIES	3	ENSPANG00000003110	ENSPANG00000047861	CHKA (ENSPANG00000015385) #8	TCIRG1 (ENSPANG00000012975) #9	ALDH3B1 (ENSPANG00000010862) #11	UNC93B1 (ENSPANG00000025891) #12	ENSPANG00000049723	ENSPANG00000046704 #14	ACY3 (ENSPANG00000024740) #15	TBX10 (ENSPANG00000006501) #16	NUDT8 (ENSPANG00000009837) #17	ENSPANG00000008595 #18	NDUFV1 (ENSPANG00000011236) #19	GSTP1 (ENSPANG00000004067) #20	CABP2 (ENSPANG00000026467) #21	CDK2AP2 (ENSPANG00000004749) #22	PITPNM1 (ENSPANG00000015330) #23	AIP (ENSPANG00000006615) #24	TMEM134 (ENSPANG00000007007) #25	CABP4 (ENSPANG00000011704) #26	GPR152 (ENSPANG00000012974) #27	CORO1B (ENSPANG00000015784) #28	PTPRCAP (ENSPANG00000004926) #29	RPS6KB2 (ENSPANG00000011196) #30	CARNS1 (ENSPANG00000011528) #31	TBC1D10C (ENSPANG00000006614) #32	PPP1CA (ENSPANG00000009836) #33	RAD9A (ENSPANG00000003109) #34	CLCF1 (ENSPANG00000022856) #35	POLD4 (ENSPANG00000007733) #36	SSH3 (ENSPANG00000023601) #37
Cercopithecinae_d	ANCESTRAL SPECIES	6	ENSGT00940000153377.B.e	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000163889 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Drill	MODERN SPECIES	942	LRP5 (ENSMLEG00000011072)	ENSMLEG00000038166	KMT5B (ENSMLEG00000035508)	CHKA (ENSMLEG00000043175) #8	TCIRG1 (ENSMLEG00000010508) #9	NDUFS8 (ENSMLEG00000031739) #10	ALDH3B1 (ENSMLEG00000025945) #11	UNC93B1 (ENSMLEG00000037140) #12	ALDH3B2 (ENSMLEG00000028402) #14	ACY3 (ENSMLEG00000031989) #15	ENSMLEG00000030742	NUDT8 (ENSMLEG00000008171) #17	NDUFV1 (ENSMLEG00000041364) #19	GSTP1 (ENSMLEG00000007972) #20	CABP2 (ENSMLEG00000010923) #21	CDK2AP2 (ENSMLEG00000040207) #22	PITPNM1 (ENSMLEG00000030151) #23	AIP (ENSMLEG00000031372) #24	TMEM134 (ENSMLEG00000027441) #25	CABP4 (ENSMLEG00000030918) #26	GPR152 (ENSMLEG00000019825) #27	CORO1B (ENSMLEG00000031164) #28	PTPRCAP (ENSMLEG00000032460) #29	RPS6KB2 (ENSMLEG00000028690) #30	CARNS1 (ENSMLEG00000041533) #31	TBC1D10C (ENSMLEG00000043951) #32	PPP1CA (ENSMLEG00000028349) #33	RAD9A (ENSMLEG00000033976) #34	CLCF1 (ENSMLEG00000000061) #35	POLD4 (ENSMLEG00000039964) #36	ENSMLEG00000024669
Sooty mangabey	MODERN SPECIES	518	ENSCATG00000042618	KMT5B (ENSCATG00000042964)	CHKA (ENSCATG00000041180) #8	TCIRG1 (ENSCATG00000031312) #9	NDUFS8 (ENSCATG00000042587) #10	ALDH3B1 (ENSCATG00000030949) #11	UNC93B1 (ENSCATG00000037367) #12	ALDH3B2 (ENSCATG00000015105) #14	ACY3 (ENSCATG00000030863) #15	TBX10 (ENSCATG00000029511) #16	NUDT8 (ENSCATG00000029910) #17	ENSCATG00000030569 #18	NDUFV1 (ENSCATG00000028405) #19	GSTP1 (ENSCATG00000032849) #20	CABP2 (ENSCATG00000029380) #21	CDK2AP2 (ENSCATG00000036893) #22	PITPNM1 (ENSCATG00000039132) #23	AIP (ENSCATG00000030555) #24	TMEM134 (ENSCATG00000041128) #25	CABP4 (ENSCATG00000038209) #26	CORO1B (ENSCATG00000039163) #28	PTPRCAP (ENSCATG00000041535) #29	RPS6KB2 (ENSCATG00000031028) #30	CARNS1 (ENSCATG00000032796) #31	TBC1D10C (ENSCATG00000035510) #32	PPP1CA (ENSCATG00000031120) #33	RAD9A (ENSCATG00000020148) #34	CLCF1 (ENSCATG00000041096) #35	POLD4 (ENSCATG00000035283) #36	SSH3 (ENSCATG00000039482) #37	ANKRD13D (ENSCATG00000030715)
Platyrrhini	ANCESTRAL SPECIES	15	ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Cebidae	ANCESTRAL SPECIES		ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Cebidae_a	DUPLICATION
Cebidae_a	ANCESTRAL SPECIES	18	ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334.g #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Capuchin	MODERN SPECIES	102	C11orf24 (ENSCCAG00000029246)	KMT5B (ENSCCAG00000022496)	CHKA (ENSCCAG00000036109) #8	ENSCCAG00000030447 #9	ENSCCAG00000036231 #10	ALDH3B1 (ENSCCAG00000020585) #11	UNC93B1 (ENSCCAG00000034142) #12	ALDH3B2 (ENSCCAG00000025402) #14	ACY3 (ENSCCAG00000030848) #15	TBX10 (ENSCCAG00000035836) #16	ENSCCAG00000034598 #18	ENSCCAG00000024841	NDUFV1 (ENSCCAG00000027983) #19	ENSCCAG00000037776	CABP2 (ENSCCAG00000018244) #21	ENSCCAG00000028353 #22	PITPNM1 (ENSCCAG00000031570) #23	AIP (ENSCCAG00000027474) #24	TMEM134 (ENSCCAG00000004430) #25	CABP4 (ENSCCAG00000027469) #26	GPR152 (ENSCCAG00000014617) #27	CORO1B (ENSCCAG00000019041) #28	PTPRCAP (ENSCCAG00000025867) #29	RPS6KB2 (ENSCCAG00000028374) #30	CARNS1 (ENSCCAG00000035608) #31	TBC1D10C (ENSCCAG00000028758) #32	PPP1CA (ENSCCAG00000020614) #33	RAD9A (ENSCCAG00000031278) #34	CLCF1 (ENSCCAG00000033675) #35	POLD4 (ENSCCAG00000019708) #36	SSH3 (ENSCCAG00000009573) #37
Bolivian squirrel monkey	MODERN SPECIES	184	KMT5B (ENSSBOG00000018620)	ENSSBOG00000014251	CHKA (ENSSBOG00000029779) #8	TCIRG1 (ENSSBOG00000029778) #9	NDUFS8 (ENSSBOG00000020737) #10	ALDH3B1 (ENSSBOG00000021610) #11	UNC93B1 (ENSSBOG00000027617) #12	ENSSBOG00000019661	ALDH3B2 (ENSSBOG00000022925) #14	ACY3 (ENSSBOG00000026048) #15	TBX10 (ENSSBOG00000027660) #16	ENSSBOG00000028474	ENSSBOG00000030579 #19	GSTP1 (ENSSBOG00000031760) #20	CABP2 (ENSSBOG00000025484) #21	CDK2AP2 (ENSSBOG00000027862) #22	PITPNM1 (ENSSBOG00000014886) #23	AIP (ENSSBOG00000024333) #24	TMEM134 (ENSSBOG00000027525) #25	CABP4 (ENSSBOG00000022028) #26	CORO1B (ENSSBOG00000034400) #28	PTPRCAP (ENSSBOG00000021090) #29	RPS6KB2 (ENSSBOG00000025951) #30	CARNS1 (ENSSBOG00000032755) #31	TBC1D10C (ENSSBOG00000022365) #32	RAD9A (ENSSBOG00000030122) #34	CLCF1 (ENSSBOG00000025814) #35	POLD4 (ENSSBOG00000030107) #36	SSH3 (ENSSBOG00000034638) #37	ANKRD13D (ENSSBOG00000034525)	GRK2 (ENSSBOG00000027760)
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00940000160334.h #22
Capuchin	MODERN SPECIES	780																ENSCCAG00000010093 #22	ENSCCAG00000028629	ENSCCAG00000028674	ZNF595 (ENSCCAG00000020641)	ENSCCAG00000022352 ##33
Marmoset	MODERN SPECIES	2	ENSCJAG00000022979	CHKA (ENSCJAG00000015722) #8	TCIRG1 (ENSCJAG00000015705) #9	ENSCJAG00000015686 #10	ALDH3B1 (ENSCJAG00000015676) #11	UNC93B1 (ENSCJAG00000045026) #12	ALDH3B2 (ENSCJAG00000077097) #14	ACY3 (ENSCJAG00000070289) #15	TBX10 (ENSCJAG00000071274) #16	ENSCJAG00000041608	NDUFV1 (ENSCJAG00000000839) #19	ENSCJAG00000031574	ENSCJAG00000000879	ENSCJAG00000000379	CABP2 (ENSCJAG00000000890) #21	CDK2AP2 (ENSCJAG00000044071) #22	PITPNM1 (ENSCJAG00000000908) #23	AIP (ENSCJAG00000000929) #24	TMEM134 (ENSCJAG00000000933) #25	CABP4 (ENSCJAG00000000939) #26	GPR152 (ENSCJAG00000000943) #27	CORO1B (ENSCJAG00000000945) #28	PTPRCAP (ENSCJAG00000000963) #29	RPS6KB2 (ENSCJAG00000000967) #30	CARNS1 (ENSCJAG00000000981) #31	TBC1D10C (ENSCJAG00000000998) #32	ENSCJAG00000000983 #33	CLCF1 (ENSCJAG00000042907) #35	POLD4 (ENSCJAG00000085771) #36	RAD9A (ENSCJAG00000047617) #34	SSH3 (ENSCJAG00000000956) #37
Mas night monkey	MODERN SPECIES	411	ENSANAG00000017977	KMT5B (ENSANAG00000029415)	CHKA (ENSANAG00000025868) #8	TCIRG1 (ENSANAG00000032110) #9	NDUFS8 (ENSANAG00000033484) #10	ALDH3B1 (ENSANAG00000022742) #11	UNC93B1 (ENSANAG00000026380) #12	ALDH3B2 (ENSANAG00000022991) #14	ACY3 (ENSANAG00000024838) #15	TBX10 (ENSANAG00000029548) #16	ENSANAG00000026791	ENSANAG00000026619 #18	NDUFV1 (ENSANAG00000029177) #19	GSTP1 (ENSANAG00000031563) #20	CABP2 (ENSANAG00000030444) #21	CDK2AP2 (ENSANAG00000034157) #22	PITPNM1 (ENSANAG00000025829) #23	AIP (ENSANAG00000022168) #24	TMEM134 (ENSANAG00000033007) #25	GPR152 (ENSANAG00000030207) #27	CABP4 (ENSANAG00000024753) #26	CORO1B (ENSANAG00000021241) #28	PTPRCAP (ENSANAG00000032799) #29	ENSANAG00000029796 #30	CARNS1 (ENSANAG00000022851) #31	TBC1D10C (ENSANAG00000019534) #32	PPP1CA (ENSANAG00000023829) #33	RAD9A (ENSANAG00000026397) #34	CLCF1 (ENSANAG00000026225) #35	POLD4 (ENSANAG00000034188) #36	SSH3 (ENSANAG00000027661) #37
Tarsier	MODERN SPECIES	1586															CABP2 (ENSTSYG00000032193) #21	CDK2AP2 (ENSTSYG00000011970) #22
Strepsirrhini	ANCESTRAL SPECIES	35	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000163374	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Lemuriformes	ANCESTRAL SPECIES	14	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000163374	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37	ENSGT00950000182928.A.a.b
Lemuriformes_a	ANCESTRAL SPECIES	3	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37	ENSGT00950000182928.A.a.b
Greater bamboo lemur	MODERN SPECIES	1196						UNC93B1 (ENSPSMG00000017927) #12	ALDH3B2 (ENSPSMG00000017876) #14	ACY3 (ENSPSMG00000017835) #15	TBX10 (ENSPSMG00000017814) #16	ENSPSMG00000017796	ENSPSMG00000017792 #18	NDUFV1 (ENSPSMG00000017743) #19	GSTP1 (ENSPSMG00000017706) #20	ENSPSMG00000017669	CABP2 (ENSPSMG00000017650) #21	CDK2AP2 (ENSPSMG00000017631) #22	PITPNM1 (ENSPSMG00000017619) #23	AIP (ENSPSMG00000017577) #24	TMEM134 (ENSPSMG00000017552) #25	CABP4 (ENSPSMG00000017519) #26	CORO1B (ENSPSMG00000017512) #28	PTPRCAP (ENSPSMG00000017495) #29	RPS6KB2 (ENSPSMG00000017487) #30	CARNS1 (ENSPSMG00000017445) #31	TBC1D10C (ENSPSMG00000017434) #32	PPP1CA (ENSPSMG00000017392) #33	RAD9A (ENSPSMG00000017323) #34	CLCF1 (ENSPSMG00000017291) #35	POLD4 (ENSPSMG00000017275) #36	SSH3 (ENSPSMG00000017256) #37	ANKRD13D (ENSPSMG00000017212)
Coquerels sifaka	MODERN SPECIES	124	KMT5B (ENSPCOG00000028166)	CHKA (ENSPCOG00000027662) #8	TCIRG1 (ENSPCOG00000027699) #9	NDUFS8 (ENSPCOG00000000121) #10	ALDH3B1 (ENSPCOG00000028800) #11	UNC93B1 (ENSPCOG00000023404) #12	ALDH3B2 (ENSPCOG00000020768) #14	ACY3 (ENSPCOG00000016521) #15	ENSPCOG00000026012	ENSPCOG00000017507	ENSPCOG00000025071 #18	NDUFV1 (ENSPCOG00000016494) #19	GSTP1 (ENSPCOG00000025031) #20	ENSPCOG00000013544	CABP2 (ENSPCOG00000027212) #21	CDK2AP2 (ENSPCOG00000017754) #22	PITPNM1 (ENSPCOG00000025532) #23	AIP (ENSPCOG00000027570) #24	TMEM134 (ENSPCOG00000014918) #25	CABP4 (ENSPCOG00000018937) #26	CORO1B (ENSPCOG00000014764) #28	PTPRCAP (ENSPCOG00000028437) #29	RPS6KB2 (ENSPCOG00000018557) #30	CARNS1 (ENSPCOG00000026244) #31	TBC1D10C (ENSPCOG00000021827) #32	PPP1CA (ENSPCOG00000026258) #33	RAD9A (ENSPCOG00000021291) #34	CLCF1 (ENSPCOG00000020098) #35	POLD4 (ENSPCOG00000023695) #36	SSH3 (ENSPCOG00000015771) #37	ANKRD13D (ENSPCOG00000022746)
Mouse lemur	MODERN SPECIES	27	C11orf24 (ENSMICG00000035582)	KMT5B (ENSMICG00000028472)	CHKA (ENSMICG00000009554) #8	TCIRG1 (ENSMICG00000009530) #9	ENSMICG00000009523 #10	ALDH3B1 (ENSMICG00000009516) #11	UNC93B1 (ENSMICG00000009511) #12	ALDH3B2 (ENSMICG00000002573) #14	ACY3 (ENSMICG00000010175) #15	ENSMICG00000038049	ENSMICG00000031375	ENSMICG00000034887 #18	NDUFV1 (ENSMICG00000038015) #19	GSTP1 (ENSMICG00000035404) #20	CABP2 (ENSMICG00000006052) #21	CDK2AP2 (ENSMICG00000029533) #22	PITPNM1 (ENSMICG00000004138) #23	AIP (ENSMICG00000037390) #24	TMEM134 (ENSMICG00000031454) #25	CABP4 (ENSMICG00000004133) #26	CORO1B (ENSMICG00000004114) #28	RPS6KB2 (ENSMICG00000004111) #30	CARNS1 (ENSMICG00000004109) #31	TBC1D10C (ENSMICG00000004107) #32	PPP1CA (ENSMICG00000004103) #33	RAD9A (ENSMICG00000035662) #34	CLCF1 (ENSMICG00000029277) #35	POLD4 (ENSMICG00000004091) #36	ENSMICG00000012349	SSH3 (ENSMICG00000004087) #37	ANKRD13D (ENSMICG00000004074)
Bushbaby	MODERN SPECIES	249	C11orf24 (ENSOGAG00000032648)	KMT5B (ENSOGAG00000025516)	CHKA (ENSOGAG00000000790) #8	TCIRG1 (ENSOGAG00000028104) #9	NDUFS8 (ENSOGAG00000013220) #10	ALDH3B1 (ENSOGAG00000000789) #11	UNC93B1 (ENSOGAG00000000787) #12	ALDH3B2 (ENSOGAG00000000786) #14	ACY3 (ENSOGAG00000000785) #15	ENSOGAG00000000784	ENSOGAG00000000783	ENSOGAG00000025265 #18	NDUFV1 (ENSOGAG00000000781) #19	ENSOGAG00000001869	CABP2 (ENSOGAG00000032757) #21	CDK2AP2 (ENSOGAG00000008275) #22	PITPNM1 (ENSOGAG00000008269) #23	AIP (ENSOGAG00000008266) #24	TMEM134 (ENSOGAG00000030275) #25	CABP4 (ENSOGAG00000010618) #26	GPR152 (ENSOGAG00000027135) #27	CORO1B (ENSOGAG00000008262) #28	PTPRCAP (ENSOGAG00000025048) #29	RPS6KB2 (ENSOGAG00000010658) #30	CARNS1 (ENSOGAG00000010654) #31	TBC1D10C (ENSOGAG00000031940) #32	PPP1CA (ENSOGAG00000033516) #33	RAD9A (ENSOGAG00000028665) #34	CLCF1 (ENSOGAG00000010653) #35	POLD4 (ENSOGAG00000028157) #36	SSH3 (ENSOGAG00000010647) #37
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT01100000264273	ENSGT00940000163374	ENSGT00940000163889 #17	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Tree shrew	MODERN SPECIES	5537															CABP2 (ENSTBEG00000005678) #21	CDK2AP2 (ENSTBEG00000005476) #22	PITPNM1 (ENSTBEG00000005091) #23	CABP4 (ENSTBEG00000005024) #26	CORO1B (ENSTBEG00000004619) #28	TBC1D10C (ENSTBEG00000004527) #32	PPP1CA (ENSTBEG00000004438) #33	CLCF1 (ENSTBEG00000004318) #35	POLD4 (ENSTBEG00000004226) #36	SSH3 (ENSTBEG00000004002) #37	GRK2 (ENSTBEG00000003700)	KDM2A (ENSTBEG00000003398)	RHOD (ENSTBEG00000003165)	SYT12 (ENSTBEG00000002982)	LRFN4 (ENSTBEG00000002925)	PC (ENSTBEG00000002657)	ENSTBEG00000002419
Glires	ANCESTRAL SPECIES	1	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT01100000264273	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Lagomorpha	ANCESTRAL SPECIES	439																ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24
Pika	MODERN SPECIES	4837															ENSOPRG00000002333	CDK2AP2 (ENSOPRG00000002323) #22	PITPNM1 (ENSOPRG00000002254) #23	AIP (ENSOPRG00000002244) #24
Rodentia	ANCESTRAL SPECIES	1	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT01100000264273	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000163374	ENSGT00940000163889 #17	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Kangaroo rat	MODERN SPECIES	373	ENSDORG00000015449	Chka (ENSDORG00000012471) #8	Tcirg1 (ENSDORG00000012469) #9	ENSDORG00000003567	Aldh3b1 (ENSDORG00000003566) #11	Unc93b1 (ENSDORG00000003564) #12	ENSDORG00000027104 #14	Acy3 (ENSDORG00000027105) #15	Tbx10 (ENSDORG00000010070)	ENSDORG00000010072 #17	Doc2g (ENSDORG00000026896) #18	Ndufv1 (ENSDORG00000010074) #19	ENSDORG00000002063 #20	Gstp3 (ENSDORG00000024771)	Cabp2 (ENSDORG00000014527) #21	Cdk2ap2 (ENSDORG00000025739) #22	ENSDORG00000014531 #23	Aip (ENSDORG00000014533) #24	Tmem134 (ENSDORG00000014535) #25	Cabp4 (ENSDORG00000014536) #26	Gpr152 (ENSDORG00000028173) #27	ENSDORG00000014537 #28	Ptprcap (ENSDORG00000014538) #29	Rps6kb2 (ENSDORG00000014540) #30	ENSDORG00000014541	Tbc1d10c (ENSDORG00000029199) #32	ENSDORG00000012300 #33	Rad9a (ENSDORG00000012297) #34	Clcf1 (ENSDORG00000015120) #35	Pold4 (ENSDORG00000023882) #36	Ssh3 (ENSDORG00000010943) #37
Myomorpha	ANCESTRAL SPECIES	4	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000163374	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Muroidea	ANCESTRAL SPECIES	2	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000163374	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Muroidea_A	ANCESTRAL SPECIES		ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b.f #14	ENSGT00940000155904.e.b.e #14	ENSGT00390000001189.b #15	ENSGT00940000163374	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b.f #14	ENSGT00940000155904.e.b.e #14	ENSGT00390000001189.b #15	ENSGT00940000163374	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641.b #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b.f #14	ENSGT00940000155904.e.b.e #14	ENSGT00390000001189.b #15	ENSGT00940000163374	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641.b #19	ENSGT00390000010641.a #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Chinese hamster chok1gshd	MODERN SPECIES	401	Chka (ENSCGRG00001013471) #8	Tcirg1 (ENSCGRG00001015923) #9	Ndufs8 (ENSCGRG00001023988) #10	Aldh3b1 (ENSCGRG00001001915) #11	Unc93b1 (ENSCGRG00001017240) #12	Aldh3b3 (ENSCGRG00001006169) #14	Aldh3b2 (ENSCGRG00001013897) #14	Acy3 (ENSCGRG00001022288) #15	Tbx10 (ENSCGRG00001004850)	Nudt8 (ENSCGRG00001011961)	Doc2g (ENSCGRG00001018346) #18	Ndufv1 (ENSCGRG00001015739) #19	Gstp1 (ENSCGRG00001020577) #20	Gstp3 (ENSCGRG00001014473)	Cabp2 (ENSCGRG00001008642) #21	Cdk2ap2 (ENSCGRG00001012920) #22	Pitpnm1 (ENSCGRG00001023287) #23	Aip (ENSCGRG00001007960) #24	Tmem134 (ENSCGRG00001010615) #25	Cabp4 (ENSCGRG00001017640) #26	Gpr152 (ENSCGRG00001019323) #27	Coro1b (ENSCGRG00001004662) #28	Ptprcap (ENSCGRG00001010731) #29	Rps6kb2 (ENSCGRG00001000810) #30	Ssh3 (ENSCGRG00001013911) #37	Ankrd13d (ENSCGRG00001015858)	Grk2 (ENSCGRG00001017520)	Kdm2a (ENSCGRG00001022950)	Rhod (ENSCGRG00001010682)	Syt12 (ENSCGRG00001017074)	2010003K11Rik (ENSCGRG00001018760)
Golden Hamster	MODERN SPECIES	617	ENSMAUG00000018025	Kmt5b (ENSMAUG00000018918)	Chka (ENSMAUG00000017295) #8	Ndufs8 (ENSMAUG00000017880) #10	Aldh3b1 (ENSMAUG00000017809) #11	Unc93b1 (ENSMAUG00000018290) #12	Aldh3b2 (ENSMAUG00000017545) #14	Acy3 (ENSMAUG00000017411) #15	Tbx10 (ENSMAUG00000019219)	Nudt8 (ENSMAUG00000017149)	Doc2g (ENSMAUG00000017758) #18	ENSMAUG00000017366 #19	Gstp1 (ENSMAUG00000017855) #20	Gstp3 (ENSMAUG00000016934)	Cabp2 (ENSMAUG00000017000) #21	Cdk2ap2 (ENSMAUG00000017833) #22	Pitpnm1 (ENSMAUG00000016912) #23	Aip (ENSMAUG00000017268) #24	Tmem134 (ENSMAUG00000017612) #25	Cabp4 (ENSMAUG00000017898) #26	Gpr152 (ENSMAUG00000016522) #27	Coro1b (ENSMAUG00000016373) #28	Ptprcap (ENSMAUG00000017359) #29	Rps6kb2 (ENSMAUG00000017230) #30	Carns1 (ENSMAUG00000017398) #31	Tbc1d10c (ENSMAUG00000017190) #32	Ppp1ca (ENSMAUG00000016057) #33	Rad9a (ENSMAUG00000017164) #34	Clcf1 (ENSMAUG00000017012) #35	Pold4 (ENSMAUG00000016004) #36	Ssh3 (ENSMAUG00000016554) #37
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b.f #14	ENSGT00940000155904.e.b.e #14	ENSGT00390000001189.b #15	ENSGT00940000163374	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641.b #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Prairie vole	MODERN SPECIES	16	Chka (ENSMOCG00000007076) #8	Tcirg1 (ENSMOCG00000005946) #9	ENSMOCG00000019842	Aldh3b1 (ENSMOCG00000020373) #11	Unc93b1 (ENSMOCG00000008961) #12	Aldh3b3 (ENSMOCG00000021302) #14	Aldh3b2 (ENSMOCG00000022624) #14	Acy3 (ENSMOCG00000016646) #15	Tbx10 (ENSMOCG00000018876)	Nudt8 (ENSMOCG00000002104)	Doc2g (ENSMOCG00000007770) #18	Ndufv1 (ENSMOCG00000018645) #19	ENSMOCG00000020246 #20	Gstp3 (ENSMOCG00000020117)	Cabp2 (ENSMOCG00000022563) #21	Cdk2ap2 (ENSMOCG00000011876) #22	Pitpnm1 (ENSMOCG00000006486) #23	Aip (ENSMOCG00000001242) #24	Tmem134 (ENSMOCG00000002494) #25	Cabp4 (ENSMOCG00000013395) #26	Gpr152 (ENSMOCG00000015199) #27	Coro1b (ENSMOCG00000015585) #28	Ptprcap (ENSMOCG00000021498) #29	Rps6kb2 (ENSMOCG00000006354) #30	ENSMOCG00000018725	Tbc1d10c (ENSMOCG00000022473) #32	ENSMOCG00000000843 #33	Rad9a (ENSMOCG00000011209) #34	Clcf1 (ENSMOCG00000019813) #35	Pold4 (ENSMOCG00000020727) #36	Ssh3 (ENSMOCG00000010426) #37
Northern American deer mouse	MODERN SPECIES		Ndufs8 (ENSPEMG00000014723) #10	Aldh3b1 (ENSPEMG00000026438) #11	Unc93b1 (ENSPEMG00000015773) #12	Aldh3b3 (ENSPEMG00000024395) #14	Aldh3b2 (ENSPEMG00000026919) #14	ENSPEMG00000014977 #15	Tbx10 (ENSPEMG00000017754)	Nudt8 (ENSPEMG00000018440)	Doc2g (ENSPEMG00000005234) #18	Ndufv1 (ENSPEMG00000011587) #19	ENSPEMG00000005365	ENSPEMG00000029247	ENSPEMG00000016907 #20	Gstp3 (ENSPEMG00000030796)	Cabp2 (ENSPEMG00000005235) #21	Cdk2ap2 (ENSPEMG00000028665) #22	Pitpnm1 (ENSPEMG00000001355) #23	Aip (ENSPEMG00000005397) #24	Tmem134 (ENSPEMG00000008430) #25	Cabp4 (ENSPEMG00000008224) #26	Gpr152 (ENSPEMG00000008897) #27	Coro1b (ENSPEMG00000011980) #28	Ptprcap (ENSPEMG00000029717) #29	Rps6kb2 (ENSPEMG00000016166) #30	Carns1 (ENSPEMG00000010758) #31	Tbc1d10c (ENSPEMG00000013534) #32	Ppp1ca (ENSPEMG00000009056) #33	Rad9a (ENSPEMG00000006275) #34	Clcf1 (ENSPEMG00000008786) #35	Pold4 (ENSPEMG00000025422) #36	Ssh3 (ENSPEMG00000018081) #37
Murinae	ANCESTRAL SPECIES		ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b.f #14	ENSGT00940000155904.e.b.e #14	ENSGT00390000001189.b #15	ENSGT00940000163374	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Mus	ANCESTRAL SPECIES		ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b.f #14	ENSGT00940000155904.e.b.e #14	ENSGT00390000001189.b #15	ENSGT00940000163374	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Mus_A	ANCESTRAL SPECIES	16	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b.f #14	ENSGT00940000155904.e.b.e #14	ENSGT00390000001189.b #15	ENSGT00940000163374	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Ryukyu mouse	MODERN SPECIES	10	Tcirg1 (MGP_CAROLIEiJ_G0022473) #9	Ndufs8 (MGP_CAROLIEiJ_G0022474) #10	Aldh3b1 (MGP_CAROLIEiJ_G0022475) #11	Unc93b1 (MGP_CAROLIEiJ_G0022476) #12	MGP_CAROLIEiJ_G0022477	Aldh3b2 (MGP_CAROLIEiJ_G0022478) #14	Acy3 (MGP_CAROLIEiJ_G0022479) #15	Tbx10 (MGP_CAROLIEiJ_G0022480)	Nudt8 (MGP_CAROLIEiJ_G0022481)	Doc2g (MGP_CAROLIEiJ_G0022482) #18	Ndufv1 (MGP_CAROLIEiJ_G0022483) #19	MGP_CAROLIEiJ_G0022484 #20	MGP_CAROLIEiJ_G0022485 #20	Gstp3 (MGP_CAROLIEiJ_G0022486)	Cabp2 (MGP_CAROLIEiJ_G0022487) #21	Cdk2ap2 (MGP_CAROLIEiJ_G0022488) #22	Pitpnm1 (MGP_CAROLIEiJ_G0022489) #23	Aip (MGP_CAROLIEiJ_G0022490) #24	Cabp4 (MGP_CAROLIEiJ_G0022491) #26	Gpr152 (MGP_CAROLIEiJ_G0022492) #27	Coro1b (MGP_CAROLIEiJ_G0022493) #28	Ptprcap (MGP_CAROLIEiJ_G0022494) #29	Rps6kb2 (MGP_CAROLIEiJ_G0022495) #30	Carns1 (MGP_CAROLIEiJ_G0022496) #31	Tbc1d10c (MGP_CAROLIEiJ_G0022497) #32	Ppp1ca (MGP_CAROLIEiJ_G0022498) #33	Rad9a (MGP_CAROLIEiJ_G0022499) #34	Clcf1 (MGP_CAROLIEiJ_G0022500) #35	Pold4 (MGP_CAROLIEiJ_G0022501) #36	Ssh3 (MGP_CAROLIEiJ_G0022502) #37	Ankrd13d (MGP_CAROLIEiJ_G0022503)
Mus_B	ANCESTRAL SPECIES	16	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b.f #14	ENSGT00940000155904.e.b.e #14	ENSGT00390000001189.b #15	ENSGT00940000163374	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Mouse	MODERN SPECIES	10	Tcirg1 (ENSMUSG00000001750) #9	Ndufs8 (ENSMUSG00000059734) #10	Aldh3b1 (ENSMUSG00000024885) #11	Unc93b1 (ENSMUSG00000036908) #12	Aldh3b3 (ENSMUSG00000037263) #14	Aldh3b2 (ENSMUSG00000075296) #14	Acy3 (ENSMUSG00000024866) #15	Tbx10 (ENSMUSG00000037477)	Nudt8 (ENSMUSG00000110949)	Doc2g (ENSMUSG00000024871) #18	Ndufv1 (ENSMUSG00000037916) #19	Gstp1 (ENSMUSG00000060803) #20	Gstp2 (ENSMUSG00000038155) #20	Gstp3 (ENSMUSG00000058216)	Cabp2 (ENSMUSG00000024857) #21	Cdk2ap2 (ENSMUSG00000024856) #22	Pitpnm1 (ENSMUSG00000024851) #23	Aip (ENSMUSG00000024847) #24	Tmem134 (ENSMUSG00000024845) #25	Cabp4 (ENSMUSG00000024842) #26	Gpr152 (ENSMUSG00000044724) #27	Coro1b (ENSMUSG00000024835) #28	Ptprcap (ENSMUSG00000045826) #29	Rps6kb2 (ENSMUSG00000024830) #30	Carns1 (ENSMUSG00000075289) #31	Tbc1d10c (ENSMUSG00000040247) #32	Ppp1ca (ENSMUSG00000040385) #33	Rad9a (ENSMUSG00000024824) #34	Clcf1 (ENSMUSG00000040663) #35	Gm45928 (ENSMUSG00000117873)	Pold4 (ENSMUSG00000024854) #36
Mus_C	ANCESTRAL SPECIES	25	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00920000150159	ENSGT00940000155904.e.b.e #14	ENSGT00390000001189.b #15	ENSGT00940000163374	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Steppe mouse	MODERN SPECIES	3175														Gstp3 (ENSMSIG00000006920)	ENSMSIG00000006735 #21	Cdk2ap2 (ENSMSIG00000006691) #22	Pitpnm1 (ENSMSIG00000006623) #23	ENSMSIG00000006607 #24	ENSMSIG00000006594 #25	Cabp4 (ENSMSIG00000006571) #26	Gpr152 (ENSMSIG00000006566) #27	Coro1b (ENSMSIG00000006535) #28	Ptprcap (ENSMSIG00000006524) #29	Rps6kb2 (ENSMSIG00000006398) #30	Carns1 (ENSMSIG00000006360) #31	Tbc1d10c (ENSMSIG00000006331) #32	Ppp1ca (ENSMSIG00000006291) #33	Rad9a (ENSMSIG00000006213) #34	Clcf1 (ENSMSIG00000006192) #35	Pold4 (ENSMSIG00000006171) #36	ENSMSIG00000005977 #37
spretus	MODERN SPECIES	10	Kmt5b (MGP_SPRETEiJ_G0023387)	Chka (MGP_SPRETEiJ_G0023388) #8	MGP_SPRETEiJ_G0023389 #14	Tcirg1 (MGP_SPRETEiJ_G0023390) #9	Ndufs8 (MGP_SPRETEiJ_G0023391) #10	Aldh3b1 (MGP_SPRETEiJ_G0023392) #11	Unc93b1 (MGP_SPRETEiJ_G0023393) #12	MGP_SPRETEiJ_G0023394	Acy3 (MGP_SPRETEiJ_G0023395) #15	Tbx10 (MGP_SPRETEiJ_G0023396)	Nudt8 (MGP_SPRETEiJ_G0023397)	Doc2g (MGP_SPRETEiJ_G0023398) #18	Ndufv1 (MGP_SPRETEiJ_G0023399) #19	Gstp3 (MGP_SPRETEiJ_G0023400)	Cabp2 (MGP_SPRETEiJ_G0023401) #21	Cdk2ap2 (MGP_SPRETEiJ_G0023402) #22	Pitpnm1 (MGP_SPRETEiJ_G0023403) #23	MGP_SPRETEiJ_G0023404 #24	Cabp4 (MGP_SPRETEiJ_G0023405) #26	Gpr152 (MGP_SPRETEiJ_G0023406) #27	Coro1b (MGP_SPRETEiJ_G0023407) #28	Ptprcap (MGP_SPRETEiJ_G0023408) #29	Rps6kb2 (MGP_SPRETEiJ_G0023409) #30	Carns1 (MGP_SPRETEiJ_G0023410) #31	Tbc1d10c (MGP_SPRETEiJ_G0023411) #32	Ppp1ca (MGP_SPRETEiJ_G0023412) #33	Rad9a (MGP_SPRETEiJ_G0023413) #34	Clcf1 (MGP_SPRETEiJ_G0023414) #35	Pold4 (MGP_SPRETEiJ_G0023415) #36	Ssh3 (MGP_SPRETEiJ_G0023416) #37	Ankrd13d (MGP_SPRETEiJ_G0023417)
Shrew mouse	MODERN SPECIES		Chka (MGP_PahariEiJ_G0013969) #8	Tcirg1 (MGP_PahariEiJ_G0013970) #9	Ndufs8 (MGP_PahariEiJ_G0013971) #10	Aldh3b1 (MGP_PahariEiJ_G0013972) #11	Unc93b1 (MGP_PahariEiJ_G0013973) #12	MGP_PahariEiJ_G0013974	Aldh3b2 (MGP_PahariEiJ_G0013975) #14	Acy3 (MGP_PahariEiJ_G0013976) #15	Tbx10 (MGP_PahariEiJ_G0013977)	Nudt8 (MGP_PahariEiJ_G0013978)	Doc2g (MGP_PahariEiJ_G0013979) #18	Ndufv1 (MGP_PahariEiJ_G0013980) #19	MGP_PahariEiJ_G0013981 #20	Gstp3 (MGP_PahariEiJ_G0013982)	Cabp2 (MGP_PahariEiJ_G0013983) #21	Cdk2ap2 (MGP_PahariEiJ_G0013984) #22	Pitpnm1 (MGP_PahariEiJ_G0013985) #23	Aip (MGP_PahariEiJ_G0013986) #24	Cabp4 (MGP_PahariEiJ_G0013987) #26	Gpr152 (MGP_PahariEiJ_G0013988) #27	MGP_PahariEiJ_G0013989 #28	Ptprcap (MGP_PahariEiJ_G0013990) #29	Rps6kb2 (MGP_PahariEiJ_G0013991) #30	Carns1 (MGP_PahariEiJ_G0013992) #31	Tbc1d10c (MGP_PahariEiJ_G0013993) #32	Ppp1ca (MGP_PahariEiJ_G0013994) #33	Rad9a (MGP_PahariEiJ_G0013995) #34	Clcf1 (MGP_PahariEiJ_G0013996) #35	Pold4 (MGP_PahariEiJ_G0013997) #36	Ssh3 (MGP_PahariEiJ_G0013998) #37	Ankrd13d (MGP_PahariEiJ_G0013999)
Rat	MODERN SPECIES		Ndufs8 (ENSRNOG00000017446) #10	Aldh3b1 (ENSRNOG00000017512) #11	Unc93b1 (ENSRNOG00000017703) #12	LOC120099971 (ENSRNOG00000017872) #14	ENSRNOG00000066970 #14	ENSRNOG00000069460 #11	Aldh3b2 (ENSRNOG00000068138) #14	Tbx10 (ENSRNOG00000017944)	Acy3 (ENSRNOG00000017901) #15	Nudt8 (ENSRNOG00000017955)	Doc2g (ENSRNOG00000018029) #18	Ndufv1 (ENSRNOG00000018117) #19	Gstp1 (ENSRNOG00000018237) #20	Gstp3 (ENSRNOG00000018287)	Cabp2 (ENSRNOG00000018339) #21	Cdk2ap2 (ENSRNOG00000018391) #22	Pitpnm1 (ENSRNOG00000018553) #23	Aip (ENSRNOG00000022289) #24	Tmem134 (ENSRNOG00000022153) #25	Cabp4 (ENSRNOG00000022044) #26	Gpr152 (ENSRNOG00000021912) #27	Coro1b (ENSRNOG00000021828) #28	Ptprcap (ENSRNOG00000021724) #29	Rps6kb2 (ENSRNOG00000021689) #30	Carns1 (ENSRNOG00000018603) #31	Tbc1d10c (ENSRNOG00000021510) #32	Ppp1ca (ENSRNOG00000018708) #33	Rad9a (ENSRNOG00000018729) #34	Clcf1 (ENSRNOG00000018752) #35	Pold4 (ENSRNOG00000018765) #36	Ssh3 (ENSRNOG00000018878) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1818												Ndufv1 (ENSNGAG00000013048) #19	ENSNGAG00000014047 #20	Gstp3 (ENSNGAG00000000204)	Cabp2 (ENSNGAG00000014616) #21	Cdk2ap2 (ENSNGAG00000007775) #22	Pitpnm1 (ENSNGAG00000020386) #23	Aip (ENSNGAG00000020330) #24	Tmem134 (ENSNGAG00000017238) #25	Cabp4 (ENSNGAG00000015044) #26	Gpr152 (ENSNGAG00000008380) #27	Coro1b (ENSNGAG00000019821) #28	Ptprcap (ENSNGAG00000017126) #29	Rps6kb2 (ENSNGAG00000005545) #30	Carns1 (ENSNGAG00000011168) #31	ENSNGAG00000020645 #32	ENSNGAG00000015301 #33	Rad9a (ENSNGAG00000018044) #34	Clcf1 (ENSNGAG00000013064) #35	Pold4 (ENSNGAG00000010450) #36	Ssh3 (ENSNGAG00000000431) #37
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	60	ENSJJAG00000017165	Chka (ENSJJAG00000012227) #8	Tcirg1 (ENSJJAG00000017427) #9	Ndufs8 (ENSJJAG00000005023) #10	Aldh3b1 (ENSJJAG00000020011) #11	Unc93b1 (ENSJJAG00000023583) #12	ENSJJAG00000023409 #14	Acy3 (ENSJJAG00000019193) #15	Tbx10 (ENSJJAG00000022634)	Nudt8 (ENSJJAG00000023328)	Doc2g (ENSJJAG00000021341) #18	Ndufv1 (ENSJJAG00000017874) #19	ENSJJAG00000023512 #20	Gstp3 (ENSJJAG00000024233)	Cabp2 (ENSJJAG00000018419) #21	ENSJJAG00000013896 #22	ENSJJAG00000003374 #23	Aip (ENSJJAG00000015345) #24	Tmem134 (ENSJJAG00000016692) #25	Cabp4 (ENSJJAG00000011101) #26	Gpr152 (ENSJJAG00000022981) #27	ENSJJAG00000001838 #28	ENSJJAG00000016182 #30	Carns1 (ENSJJAG00000018930) #31	Tbc1d10c (ENSJJAG00000004622) #32	Ppp1ca (ENSJJAG00000010290) #33	Rad9a (ENSJJAG00000013292) #34	Clcf1 (ENSJJAG00000019178) #35	Pold4 (ENSJJAG00000015752) #36	Ssh3 (ENSJJAG00000013515) #37	Ankrd13d (ENSJJAG00000020972)
Lesser Egyptian jerboa	MODERN SPECIES	176																ENSJJAG00000013797 #22	Slc24a5 (ENSJJAG00000017458)	ENSJJAG00000015428	Ctxn2 (ENSJJAG00000013770)	Slc12a1 (ENSJJAG00000009847)	Fbn1 (ENSJJAG00000018173)	Eid1 (ENSJJAG00000022180)	Shc4 (ENSJJAG00000021146)	ENSJJAG00000017576	Secisbp2l (ENSJJAG00000014644)	Cops2 (ENSJJAG00000012737)	ENSJJAG00000012276	ENSJJAG00000011858	ENSJJAG00000011328	Galk2 (ENSJJAG00000010967)	Fgf7 (ENSJJAG00000010425)
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT01100000264273	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Sciuridae	ANCESTRAL SPECIES	22	ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	2	ENSSVLG00005024959	CHKA (ENSSVLG00005025020) #8	ENSSVLG00005025068 #9	ENSSVLG00005025100 #9	NDUFS8 (ENSSVLG00005025114) #10	ALDH3B1 (ENSSVLG00005025147) #11	UNC93B1 (ENSSVLG00005025215) #12	ALDH3B2 (ENSSVLG00005025242) #14	ACY3 (ENSSVLG00005025257) #15	TBX10 (ENSSVLG00005025280) #16	ENSSVLG00005025291	ENSSVLG00005025305 #18	NDUFV1 (ENSSVLG00005025325) #19	GSTP1 (ENSSVLG00005025366) #20	CABP2 (ENSSVLG00005025399) #21	ENSSVLG00005004797 #22	PITPNM1 (ENSSVLG00005004838) #23	AIP (ENSSVLG00005004870) #24	TMEM134 (ENSSVLG00005004915) #25	CABP4 (ENSSVLG00005004965) #26	CORO1B (ENSSVLG00005004995) #28	PTPRCAP (ENSSVLG00005005019) #29	RPS6KB2 (ENSSVLG00005005042) #30	CARNS1 (ENSSVLG00005005060) #31	TBC1D10C (ENSSVLG00005005134) #32	PPP1CA (ENSSVLG00005005219) #33	RAD9A (ENSSVLG00005005281) #34	CLCF1 (ENSSVLG00005005308) #35	POLD4 (ENSSVLG00005005332) #36	ENSSVLG00005005401	SSH3 (ENSSVLG00005005420) #37
Eurasian red squirrel	MODERN SPECIES	7	ENSSVLG00005009267	ENSSVLG00005009250	GALNT15 (ENSSVLG00005009222)	ENSSVLG00005009200	ENSSVLG00005009153	ENSSVLG00005009053	RFTN1 (ENSSVLG00005009013)	ENSSVLG00005008982	ENSSVLG00005008951	ENSSVLG00005008794	PLCL2 (ENSSVLG00005008741)	TBC1D5 (ENSSVLG00005008563)	SATB1 (ENSSVLG00005024270)	KCNH8 (ENSSVLG00005024188)	ENSSVLG00005024173	ENSSVLG00005024162 #22	EFHB (ENSSVLG00005024067)	RAB5A (ENSSVLG00005024015)	PP2D1 (ENSSVLG00005023998)	ENSSVLG00005023944	ENSSVLG00005023908	ENSSVLG00005023889	ENSSVLG00005023862	ENSSVLG00005023824	ZNF385D (ENSSVLG00005023781)	TOMM22 (ENSSVLG00005023755)	ENSSVLG00005023738	ENSSVLG00005023698	ENSSVLG00005023675	ENSSVLG00005023653	UBE2E2 (ENSSVLG00005023634)
Marmotini	ANCESTRAL SPECIES	6	ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Marmotini_b	ANCESTRAL SPECIES	19	ENSGT00940000156574.C	ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Arctic ground squirrel	MODERN SPECIES	172	LRP5 (ENSUPAG00010007453)	ENSUPAG00010007475	KMT5B (ENSUPAG00010007478)	CHKA (ENSUPAG00010007654) #8	TCIRG1 (ENSUPAG00010007691) #9	NDUFS8 (ENSUPAG00010007713) #10	ALDH3B1 (ENSUPAG00010007728) #11	UNC93B1 (ENSUPAG00010007746) #12	ACY3 (ENSUPAG00010007756) #15	ENSUPAG00010007771	ENSUPAG00010007775	ENSUPAG00010007785 #18	NDUFV1 (ENSUPAG00010007803) #19	GSTP1 (ENSUPAG00010007817) #20	CABP2 (ENSUPAG00010007845) #21	CDK2AP2 (ENSUPAG00010007891) #22	PITPNM1 (ENSUPAG00010007905) #23	AIP (ENSUPAG00010007946) #24	TMEM134 (ENSUPAG00010007965) #25	CABP4 (ENSUPAG00010007974) #26	GPR152 (ENSUPAG00010007987) #27	CORO1B (ENSUPAG00010007990) #28	PTPRCAP (ENSUPAG00010008006) #29	RPS6KB2 (ENSUPAG00010008011) #30	CARNS1 (ENSUPAG00010008057) #31	TBC1D10C (ENSUPAG00010008076) #32	PPP1CA (ENSUPAG00010008103) #33	RAD9A (ENSUPAG00010008112) #34	CLCF1 (ENSUPAG00010008123) #35	POLD4 (ENSUPAG00010008127) #36	SSH3 (ENSUPAG00010008136) #37
Squirrel	MODERN SPECIES	199	ENSSTOG00000012277	KMT5B (ENSSTOG00000024331)	ENSSTOG00000019647	CHKA (ENSSTOG00000011503) #8	TCIRG1 (ENSSTOG00000024529) #9	NDUFS8 (ENSSTOG00000011500) #10	ALDH3B1 (ENSSTOG00000015155) #11	UNC93B1 (ENSSTOG00000011497) #12	ACY3 (ENSSTOG00000015148) #15	TBX10 (ENSSTOG00000011629) #16	ENSSTOG00000024208	ENSSTOG00000021128 #18	NDUFV1 (ENSSTOG00000005850) #19	GSTP1 (ENSSTOG00000025905) #20	CABP2 (ENSSTOG00000014876) #21	CDK2AP2 (ENSSTOG00000024042) #22	PITPNM1 (ENSSTOG00000027855) #23	AIP (ENSSTOG00000015721) #24	TMEM134 (ENSSTOG00000015718) #25	CABP4 (ENSSTOG00000019909) #26	GPR152 (ENSSTOG00000031517) #27	CORO1B (ENSSTOG00000015711) #28	PTPRCAP (ENSSTOG00000032084) #29	RPS6KB2 (ENSSTOG00000026088) #30	CARNS1 (ENSSTOG00000026187) #31	TBC1D10C (ENSSTOG00000015704) #32	PPP1CA (ENSSTOG00000019550) #33	RAD9A (ENSSTOG00000021365) #34	CLCF1 (ENSSTOG00000015702) #35	POLD4 (ENSSTOG00000015701) #36	SSH3 (ENSSTOG00000015693) #37
Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT01100000264273	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Guinea pig	MODERN SPECIES	42	ENSCPOG00000000621	KMT5B (ENSCPOG00000002147)	CHKA (ENSCPOG00000022236) #8	TCIRG1 (ENSCPOG00000001417) #9	NDUFS8 (ENSCPOG00000001416) #10	ALDH3B1 (ENSCPOG00000021502) #11	UNC93B1 (ENSCPOG00000026431) #12	ALDH3B2 (ENSCPOG00000002523) #14	ACY3 (ENSCPOG00000002519) #15	TBX10 (ENSCPOG00000032079) #16	ENSCPOG00000002514	ENSCPOG00000022649 #18	NDUFV1 (ENSCPOG00000006645) #19	GSTP1 (ENSCPOG00000020253) #20	CABP2 (ENSCPOG00000023151) #21	CDK2AP2 (ENSCPOG00000033165) #22	PITPNM1 (ENSCPOG00000011204) #23	AIP (ENSCPOG00000025197) #24	TMEM134 (ENSCPOG00000034721) #25	CABP4 (ENSCPOG00000038418) #26	GPR152 (ENSCPOG00000020561) #27	CORO1B (ENSCPOG00000010527) #28	PTPRCAP (ENSCPOG00000023825) #29	RPS6KB2 (ENSCPOG00000010518) #30	CARNS1 (ENSCPOG00000010514) #31	TBC1D10C (ENSCPOG00000011171) #32	PPP1CA (ENSCPOG00000032835) #33	RAD9A (ENSCPOG00000033699) #34	CLCF1 (ENSCPOG00000031948) #35	POLD4 (ENSCPOG00000039935) #36	SSH3 (ENSCPOG00000008616) #37
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Degu	MODERN SPECIES	59	ENSODEG00000017460	CHKA (ENSODEG00000017808) #8	TCIRG1 (ENSODEG00000017607) #9	ENSODEG00000017577 #10	ALDH3B1 (ENSODEG00000017474) #11	UNC93B1 (ENSODEG00000017652) #12	ENSODEG00000017464	ALDH3B2 (ENSODEG00000017453) #14	ACY3 (ENSODEG00000017439) #15	TBX10 (ENSODEG00000017601) #16	ENSODEG00000017697	ENSODEG00000017660 #18	NDUFV1 (ENSODEG00000017535) #19	ENSODEG00000017726 #20	CABP2 (ENSODEG00000017525) #21	CDK2AP2 (ENSODEG00000017482) #22	ENSODEG00000017542 #23	ENSODEG00000017554 #24	ENSODEG00000017587 #25	CABP4 (ENSODEG00000017561) #26	GPR152 (ENSODEG00000017462) #27	ENSODEG00000017778 #28	PTPRCAP (ENSODEG00000017616) #29	RPS6KB2 (ENSODEG00000017566) #30	CARNS1 (ENSODEG00000017571) #31	TBC1D10C (ENSODEG00000017872) #32	ENSODEG00000017595 #33	RAD9A (ENSODEG00000017457) #34	CLCF1 (ENSODEG00000017639) #35	POLD4 (ENSODEG00000017608) #36	SSH3 (ENSODEG00000017507) #37
Long-tailed chinchilla	MODERN SPECIES	129	ENSCLAG00000017122	KMT5B (ENSCLAG00000016628)	CHKA (ENSCLAG00000014223) #8	TCIRG1 (ENSCLAG00000014792) #9	NDUFS8 (ENSCLAG00000017156) #10	ALDH3B1 (ENSCLAG00000016029) #11	UNC93B1 (ENSCLAG00000016729) #12	ALDH3B2 (ENSCLAG00000017296) #14	ACY3 (ENSCLAG00000016314) #15	TBX10 (ENSCLAG00000015667) #16	ENSCLAG00000016240	ENSCLAG00000016785 #18	NDUFV1 (ENSCLAG00000016746) #19	GSTP1 (ENSCLAG00000015548) #20	CABP2 (ENSCLAG00000015734) #21	CDK2AP2 (ENSCLAG00000014787) #22	ENSCLAG00000015015 #23	AIP (ENSCLAG00000016600) #24	TMEM134 (ENSCLAG00000016841) #25	CABP4 (ENSCLAG00000016497) #26	GPR152 (ENSCLAG00000016443) #27	CORO1B (ENSCLAG00000015993) #28	RPS6KB2 (ENSCLAG00000016408) #30	PTPRCAP (ENSCLAG00000016874) #29	CARNS1 (ENSCLAG00000016069) #31	TBC1D10C (ENSCLAG00000014250) #32	PPP1CA (ENSCLAG00000014515) #33	RAD9A (ENSCLAG00000014799) #34	CLCF1 (ENSCLAG00000016411) #35	POLD4 (ENSCLAG00000016804) #36	SSH3 (ENSCLAG00000016225) #37
Naked mole-rat female	MODERN SPECIES	14	TCIRG1 (ENSHGLG00000018395) #9	NDUFS8 (ENSHGLG00000009570) #10	ALDH3B1 (ENSHGLG00000015602) #11	UNC93B1 (ENSHGLG00000011769) #12	ALDH3B2 (ENSHGLG00000010052) #14	ACY3 (ENSHGLG00000015831) #15	TBX10 (ENSHGLG00000015945) #16	NUDT8 (ENSHGLG00000047808) #17	ENSHGLG00000018636 #18	ENSHGLG00000048694	NDUFV1 (ENSHGLG00000042428) #19	GSTP1 (ENSHGLG00000018697) #20	ENSHGLG00000043193	ENSHGLG00000011960	CABP2 (ENSHGLG00000006502) #21	CDK2AP2 (ENSHGLG00000008013) #22	PITPNM1 (ENSHGLG00000008671) #23	AIP (ENSHGLG00000010309) #24	TMEM134 (ENSHGLG00000046661)	CABP4 (ENSHGLG00000012191) #26	GPR152 (ENSHGLG00000020880) #27	CORO1B (ENSHGLG00000014004) #28	PTPRCAP (ENSHGLG00000038375) #29	RPS6KB2 (ENSHGLG00000011537) #30	CARNS1 (ENSHGLG00000015759) #31	TBC1D10C (ENSHGLG00000011863) #32	PPP1CA (ENSHGLG00000013028) #33	RAD9A (ENSHGLG00000013829) #34	CLCF1 (ENSHGLG00000009725) #35	POLD4 (ENSHGLG00000010576) #36	SSH3 (ENSHGLG00000011687) #37
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT01100000264273	ENSGT00940000163374	ENSGT00940000163889 #17	ENSGT00390000010641 #19	ENSGT00940000163435	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Eulipotyphla	ANCESTRAL SPECIES	1788																ENSGT00940000160334 #22	ENSGT00940000161522 #23
Hedgehog	MODERN SPECIES	1297																CDK2AP2 (ENSEEUG00000004767) #22	ENSEEUG00000004654 #23
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.e.a	ENSGT01100000264273	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT01100000264273	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Carnivora	ANCESTRAL SPECIES	7	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #14	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Felidae	ANCESTRAL SPECIES		ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Panthera	ANCESTRAL SPECIES	18	ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Tiger	MODERN SPECIES	492															CABP2 (ENSPTIG00000017163) #21	CDK2AP2 (ENSPTIG00000016923) #22	PITPNM1 (ENSPTIG00000014649) #23	AIP (ENSPTIG00000014436) #24	ENSPTIG00000013619 #25	CABP4 (ENSPTIG00000012944) #26	ENSPTIG00000012585	ENSPTIG00000011991 #28	RPS6KB2 (ENSPTIG00000011233) #30	CARNS1 (ENSPTIG00000011037) #31	TBC1D10C (ENSPTIG00000010601) #32	PPP1CA (ENSPTIG00000009825) #33	RAD9A (ENSPTIG00000008690) #34	CLCF1 (ENSPTIG00000008383) #35	POLD4 (ENSPTIG00000007757) #36	SSH3 (ENSPTIG00000007418) #37
Panthera_a	ANCESTRAL SPECIES	18	ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
lion	MODERN SPECIES	10				CHKA (ENSPLOG00000011481) #8	TCIRG1 (ENSPLOG00000011364) #9	NDUFS8 (ENSPLOG00000011271) #10	ENSPLOG00000011172 ##14	UNC93B1 (ENSPLOG00000011063) #12	ALDH3B2 (ENSPLOG00000013293) #14	TBX10 (ENSPLOG00000013092) #16	ENSPLOG00000013043	ENSPLOG00000012919 #18	NDUFV1 (ENSPLOG00000012672) #19	ENSPLOG00000012523	CABP2 (ENSPLOG00000012338) #21	CDK2AP2 (ENSPLOG00000012271) #22	PITPNM1 (ENSPLOG00000012168) #23	AIP (ENSPLOG00000012104) #24	ENSPLOG00000011943	CABP4 (ENSPLOG00000011804) #26	GPR152 (ENSPLOG00000011768) #27	CORO1B (ENSPLOG00000011738) #28	PTPRCAP (ENSPLOG00000011683) #29	RPS6KB2 (ENSPLOG00000011644) #30	CARNS1 (ENSPLOG00000011427) #31	TBC1D10C (ENSPLOG00000011370) #32	PPP1CA (ENSPLOG00000011253) #33	RAD9A (ENSPLOG00000011138) #34	CLCF1 (ENSPLOG00000011060) #35	POLD4 (ENSPLOG00000010990) #36	SSH3 (ENSPLOG00000010812) #37
leopard	MODERN SPECIES	64	KMT5B (ENSPPRG00000002092)	CHKA (ENSPPRG00000003923) #8	ENSPPRG00000004626 #9	ENSPPRG00000004705 #9	NDUFS8 (ENSPPRG00000004781) #10	ENSPPRG00000005565 ##14	UNC93B1 (ENSPPRG00000006045) #12	ALDH3B2 (ENSPPRG00000006205) #14	TBX10 (ENSPPRG00000006221) #16	ENSPPRG00000006340	ENSPPRG00000006725 #18	NDUFV1 (ENSPPRG00000006947) #19	ENSPPRG00000006958	ENSPPRG00000007615	CABP2 (ENSPPRG00000007774) #21	CDK2AP2 (ENSPPRG00000007878) #22	PITPNM1 (ENSPPRG00000008543) #23	AIP (ENSPPRG00000008664) #24	TMEM134 (ENSPPRG00000008976) #25	CABP4 (ENSPPRG00000009084) #26	GPR152 (ENSPPRG00000009357) #27	CORO1B (ENSPPRG00000009537) #28	PTPRCAP (ENSPPRG00000010851) #29	RPS6KB2 (ENSPPRG00000011013) #30	CARNS1 (ENSPPRG00000011289) #31	TBC1D10C (ENSPPRG00000011477) #32	PPP1CA (ENSPPRG00000011753) #33	RAD9A (ENSPPRG00000011858) #34	CLCF1 (ENSPPRG00000012005) #35	POLD4 (ENSPPRG00000012466) #36	SSH3 (ENSPPRG00000013107) #37
Cat	MODERN SPECIES	241	PPP6R3 (ENSFCAG00000005076)	LRP5 (ENSFCAG00000012666)	ENSFCAG00000042941	KMT5B (ENSFCAG00000009067)	CHKA (ENSFCAG00000006219) #8	TCIRG1 (ENSFCAG00000002995) #9	NDUFS8 (ENSFCAG00000002988) #10	ENSFCAG00000026709 ##14	UNC93B1 (ENSFCAG00000002986) #12	ENSFCAG00000044091 #14	TBX10 (ENSFCAG00000001760) #16	ENSFCAG00000022755 #18	NDUFV1 (ENSFCAG00000001757) #19	GSTP1 (ENSFCAG00000001755)	CABP2 (ENSFCAG00000001754) #21	CDK2AP2 (ENSFCAG00000042271) #22	PITPNM1 (ENSFCAG00000001751) #23	ENSFCAG00000052433	CABP4 (ENSFCAG00000003398) #26	AIP (ENSFCAG00000001749) #24	TMEM134 (ENSFCAG00000031246) #27	CORO1B (ENSFCAG00000003396) #28	PTPRCAP (ENSFCAG00000045093) #29	RPS6KB2 (ENSFCAG00000003395) #30	CARNS1 (ENSFCAG00000003394) #31	PPP1CA (ENSFCAG00000028502) #33	RAD9A (ENSFCAG00000003391) #34	CLCF1 (ENSFCAG00000030466) #35	POLD4 (ENSFCAG00000026317) #36	SSH3 (ENSFCAG00000003389) #37	ANKRD13D (ENSFCAG00000003388)
Caniformia	ANCESTRAL SPECIES	21	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049.f #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #14	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Caniformia_b	ANCESTRAL SPECIES	19	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049.f #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #14	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Ursidae	ANCESTRAL SPECIES	2	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049.f #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #14	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125.b	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00940000167974.a	ENSGT00950000185478	ENSGT00940000161468.b #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36
Ursus	ANCESTRAL SPECIES	21	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049.f #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00940000163374	ENSGT00940000163889 #17	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125.b.b.b	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00940000167974.a	ENSGT00390000011766 #25	ENSGT00940000161468.b #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
American black bear	MODERN SPECIES	686														ENSUAMG00000005646	CABP2 (ENSUAMG00000005653) #21	CDK2AP2 (ENSUAMG00000005659) #22	PITPNM1 (ENSUAMG00000005674) #23	AIP (ENSUAMG00000005812) #24	ENSUAMG00000005815	TMEM134 (ENSUAMG00000005817) #25	CABP4 (ENSUAMG00000005819) #26	GPR152 (ENSUAMG00000005821) #27	CORO1B (ENSUAMG00000005827) #28	RPS6KB2 (ENSUAMG00000005838) #30	CARNS1 (ENSUAMG00000005842) #31	TBC1D10C (ENSUAMG00000005844) #32	ENSUAMG00000005846 #33	ENSUAMG00000005849 #34	CLCF1 (ENSUAMG00000005852) #35	ENSUAMG00000005854 #36	SSH3 (ENSUAMG00000005856) #37
Polar bear	MODERN SPECIES	328	ENSUMAG00000013275	KMT5B (ENSUMAG00000013196)	CHKA (ENSUMAG00000013148) #8	ENSUMAG00000013132 #9	NDUFS8 (ENSUMAG00000013128) #10	ENSUMAG00000013125 #11	UNC93B1 (ENSUMAG00000013118) #12	ENSUMAG00000013104 #14	ENSUMAG00000013092	NUDT8 (ENSUMAG00000013078) #17	ENSUMAG00000013065 #18	NDUFV1 (ENSUMAG00000013061) #19	ENSUMAG00000013053	ENSUMAG00000013046	CABP2 (ENSUMAG00000013041) #21	CDK2AP2 (ENSUMAG00000013035) #22	PITPNM1 (ENSUMAG00000012967) #23	AIP (ENSUMAG00000012949) #24	ENSUMAG00000012948	CABP4 (ENSUMAG00000012943) #26	CORO1B (ENSUMAG00000012896) #28	RPS6KB2 (ENSUMAG00000012544) #30	TBC1D10C (ENSUMAG00000012480) #32	PPP1CA (ENSUMAG00000012448) #33	RAD9A (ENSUMAG00000012428) #34	CLCF1 (ENSUMAG00000012426) #35	POLD4 (ENSUMAG00000012424) #36	SSH3 (ENSUMAG00000012376) #37	ANKRD13D (ENSUMAG00000012336)	GRK2 (ENSUMAG00000011985)	KDM2A (ENSUMAG00000011947)
Giant Panda	MODERN SPECIES	7	ENSAMEG00000030515	KMT5B (ENSAMEG00000001298)	CHKA (ENSAMEG00000001272) #8	TCIRG1 (ENSAMEG00000001230) #9	NDUFS8 (ENSAMEG00000001217) #10	ALDH3B1 (ENSAMEG00000001158) #11	UNC93B1 (ENSAMEG00000001141) #12	ENSAMEG00000031445	ALDH3B2 (ENSAMEG00000029412) #14	TBX10 (ENSAMEG00000001098) #16	ENSAMEG00000027070	ENSAMEG00000001078 #18	NDUFV1 (ENSAMEG00000001049) #19	ENSAMEG00000001020	CABP2 (ENSAMEG00000001006) #21	CDK2AP2 (ENSAMEG00000001002) #22	PITPNM1 (ENSAMEG00000000948) #23	AIP (ENSAMEG00000000937) #24	ENSAMEG00000028957	ENSAMEG00000026647	CABP4 (ENSAMEG00000000919) #26	GPR152 (ENSAMEG00000000918) #27	CORO1B (ENSAMEG00000000857) #28	PTPRCAP (ENSAMEG00000000855) #29	RPS6KB2 (ENSAMEG00000000822) #30	ENSAMEG00000000816	TBC1D10C (ENSAMEG00000000778) #32	PPP1CA (ENSAMEG00000000758) #33	CLCF1 (ENSAMEG00000000739) #35	POLD4 (ENSAMEG00000000732) #36	RAD9A (ENSAMEG00000000743) #34
Mustelinae	ANCESTRAL SPECIES	3	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049.f #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #14	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
American mink	MODERN SPECIES	104	ENSNVIG00000012636 #9	ENSNVIG00000012648 #9	ENSNVIG00000012658 #9	NDUFS8 (ENSNVIG00000012663) #10	ENSNVIG00000012672 #11	UNC93B1 (ENSNVIG00000012714) #12	ENSNVIG00000012729	ALDH3B2 (ENSNVIG00000012740) #14	TBX10 (ENSNVIG00000012771) #16	ENSNVIG00000012787 #18	ENSNVIG00000012818	NDUFV1 (ENSNVIG00000012828) #19	ENSNVIG00000012875	ENSNVIG00000012900	CABP2 (ENSNVIG00000012930) #21	CDK2AP2 (ENSNVIG00000012971) #22	PITPNM1 (ENSNVIG00000012984) #23	AIP (ENSNVIG00000013080) #24	TMEM134 (ENSNVIG00000013113) #25	CABP4 (ENSNVIG00000013152) #26	GPR152 (ENSNVIG00000013164) #27	CORO1B (ENSNVIG00000013189) #28	PTPRCAP (ENSNVIG00000013201) #29	RPS6KB2 (ENSNVIG00000013220) #30	CARNS1 (ENSNVIG00000013255) #31	TBC1D10C (ENSNVIG00000013336) #32	ENSNVIG00000013346 #33	RAD9A (ENSNVIG00000013356) #34	CLCF1 (ENSNVIG00000013368) #35	POLD4 (ENSNVIG00000013376) #36	SSH3 (ENSNVIG00000013393) #37
Canidae	ANCESTRAL SPECIES	13	ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049.e.b #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.e.a.b.a.b	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Red fox	MODERN SPECIES	49	CUNH11orf24 (ENSVVUG00000010101)	KMT5B (ENSVVUG00000010104)	ENSVVUG00000010120	CHKA (ENSVVUG00000010123) #8	TCIRG1 (ENSVVUG00000010160) #9	ENSVVUG00000010174 #10	ENSVVUG00000010184 ##14	UNC93B1 (ENSVVUG00000010187) #12	ENSVVUG00000010192	NUDT8 (ENSVVUG00000010211) #17	ENSVVUG00000010218 #18	NDUFV1 (ENSVVUG00000010224) #19	ENSVVUG00000010240	ENSVVUG00000010271	CABP2 (ENSVVUG00000010286) #21	CDK2AP2 (ENSVVUG00000010306) #22	PITPNM1 (ENSVVUG00000010318) #23	AIP (ENSVVUG00000010343) #24	TMEM134 (ENSVVUG00000010350) #25	CABP4 (ENSVVUG00000010355) #26	GPR152 (ENSVVUG00000010367) #27	CORO1B (ENSVVUG00000010374) #28	PTPRCAP (ENSVVUG00000010384) #29	RPS6KB2 (ENSVVUG00000010392) #30	CARNS1 (ENSVVUG00000010408) #31	TBC1D10C (ENSVVUG00000010411) #32	PPP1CA (ENSVVUG00000010423) #33	RAD9A (ENSVVUG00000010426) #34	CLCF1 (ENSVVUG00000010439) #35	POLD4 (ENSVVUG00000010444) #36	SSH3 (ENSVVUG00000010455) #37
Canis_lupus	ANCESTRAL SPECIES	7	ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049.e.b #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.e.a.b.a.b	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Dingo	MODERN SPECIES	36	ENSCAFG00020002089	KMT5B (ENSCAFG00020001997)	CHKA (ENSCAFG00020001949) #8	TCIRG1 (ENSCAFG00020001934) #9	ENSCAFG00020001910 #10	ENSCAFG00020001904 ##14	UNC93B1 (ENSCAFG00020001896) #12	ALDH3B2 (ENSCAFG00020001840) #14	TBX10 (ENSCAFG00020001823) #16	NUDT8 (ENSCAFG00020001816) #17	ENSCAFG00020001779 #18	ENSCAFG00020001698 #19	ENSCAFG00020001675	ENSCAFG00020001669	CABP2 (ENSCAFG00020001633) #21	CDK2AP2 (ENSCAFG00020001620) #22	PITPNM1 (ENSCAFG00020001608) #23	AIP (ENSCAFG00020001604) #24	ENSCAFG00020001594	CABP4 (ENSCAFG00020001570) #26	GPR152 (ENSCAFG00020001563) #27	CORO1B (ENSCAFG00020001558) #28	PTPRCAP (ENSCAFG00020001549) #29	RPS6KB2 (ENSCAFG00020001528) #30	CARNS1 (ENSCAFG00020001494) #31	TBC1D10C (ENSCAFG00020001477) #32	PPP1CA (ENSCAFG00020001475) #33	RAD9A (ENSCAFG00020001462) #34	CLCF1 (ENSCAFG00020001441) #35	POLD4 (ENSCAFG00020001435) #36	SSH3 (ENSCAFG00020001411) #37
Laurasiatheria_c	ANCESTRAL SPECIES	20	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT01100000264273	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Chiroptera	ANCESTRAL SPECIES	14	ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Microchiroptera	ANCESTRAL SPECIES	13	ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Microbat	MODERN SPECIES	1351	PPP6R3 (ENSMLUG00000013121)	LRP5 (ENSMLUG00000001206)	KMT5B (ENSMLUG00000008196)	CHKA (ENSMLUG00000017614) #8	TCIRG1 (ENSMLUG00000017612) #9	NDUFS8 (ENSMLUG00000017611) #10	ALDH3B1 (ENSMLUG00000029407) #11	UNC93B1 (ENSMLUG00000017610) #12	ALDH3B2 (ENSMLUG00000028367) #14	ENSMLUG00000011588 #15	TBX10 (ENSMLUG00000011576) #16	ENSMLUG00000026150 #18	NDUFV1 (ENSMLUG00000011539) #19	GSTP1 (ENSMLUG00000011529) #20	CABP2 (ENSMLUG00000011504) #21	CDK2AP2 (ENSMLUG00000011488) #22	PITPNM1 (ENSMLUG00000011222) #23	AIP (ENSMLUG00000011271) #24	TMEM134 (ENSMLUG00000005143) #25	CABP4 (ENSMLUG00000005139) #26	GPR152 (ENSMLUG00000022557) #27	CORO1B (ENSMLUG00000025612) #28	PTPRCAP (ENSMLUG00000029066) #29	ENSMLUG00000005128 #30	ENSMLUG00000005122	TBC1D10C (ENSMLUG00000005115) #32	PPP1CA (ENSMLUG00000005112) #33	RAD9A (ENSMLUG00000005102) #34	CLCF1 (ENSMLUG00000008928) #35	POLD4 (ENSMLUG00000005095) #36	SSH3 (ENSMLUG00000012082) #37
Greater horseshoe bat	MODERN SPECIES	2	KMT5B (ENSRFEG00010021206)	CHKA (ENSRFEG00010021236) #8	TCIRG1 (ENSRFEG00010021289) #9	NDUFS8 (ENSRFEG00010021301) #10	ENSRFEG00010021317 #14	UNC93B1 (ENSRFEG00010021346) #12	ENSRFEG00010021357 #14	ACY3 (ENSRFEG00010021361) #15	TBX10 (ENSRFEG00010021376) #16	ENSRFEG00010021387	ENSRFEG00010021394 #18	NDUFV1 (ENSRFEG00010021407) #19	ENSRFEG00010021433 #20	ENSRFEG00010021451	CABP2 (ENSRFEG00010021473) #21	CDK2AP2 (ENSRFEG00010021494) #22	PITPNM1 (ENSRFEG00010021507) #23	AIP (ENSRFEG00010021536) #24	TMEM134 (ENSRFEG00010021554) #25	CABP4 (ENSRFEG00010021584) #26	GPR152 (ENSRFEG00010021609) #27	CORO1B (ENSRFEG00010021624) #28	PTPRCAP (ENSRFEG00010021642) #29	RPS6KB2 (ENSRFEG00010021650) #30	CARNS1 (ENSRFEG00010021672) #31	TBC1D10C (ENSRFEG00010000562) #32	PPP1CA (ENSRFEG00010000614) #33	RAD9A (ENSRFEG00010000657) #34	CLCF1 (ENSRFEG00010000699) #35	POLD4 (ENSRFEG00010000741) #36	SSH3 (ENSRFEG00010000770) #37
Megabat	MODERN SPECIES	2353										ACY3 (ENSPVAG00000008593) #15	ENSPVAG00000008592	ENSPVAG00000008591	NDUFV1 (ENSPVAG00000008590) #19	ENSPVAG00000008586	CABP2 (ENSPVAG00000008584) #21	CDK2AP2 (ENSPVAG00000008582) #22	PITPNM1 (ENSPVAG00000008581) #23	AIP (ENSPVAG00000008580) #24	TMEM134 (ENSPVAG00000008578) #25	CABP4 (ENSPVAG00000008576) #26	CORO1B (ENSPVAG00000008571) #28	RPS6KB2 (ENSPVAG00000008565) #30	ENSPVAG00000008564 #31	TBC1D10C (ENSPVAG00000008561) #32	PPP1CA (ENSPVAG00000008557) #33	RAD9A (ENSPVAG00000008553) #34	CLCF1 (ENSPVAG00000008552) #35	POLD4 (ENSPVAG00000008550) #36	SSH3 (ENSPVAG00000008548) #37	ANKRD13D (ENSPVAG00000008545)	GRK2 (ENSPVAG00000008543)
Equus	ANCESTRAL SPECIES	11	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.e.b	ENSGT01100000264273	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Horse	MODERN SPECIES	3	LRP5 (ENSECAG00000013180)	C12H11orf24 (ENSECAG00000028930)	KMT5B (ENSECAG00000012952)	CHKA (ENSECAG00000011539) #8	TCIRG1 (ENSECAG00000010196) #9	NDUFS8 (ENSECAG00000010175) #10	ALDH3B1 (ENSECAG00000007907) ##14	UNC93B1 (ENSECAG00000007813) #12	ALDH3B2 (ENSECAG00000000896) #14	TBX10 (ENSECAG00000022406) #16	DOC2G (ENSECAG00000022087) #18	ENSECAG00000054975	NDUFV1 (ENSECAG00000021477) #19	ENSECAG00000020462	CABP2 (ENSECAG00000020097) #21	CDK2AP2 (ENSECAG00000020079) #22	PITPNM1 (ENSECAG00000017776) #23	AIP (ENSECAG00000017167) #24	TMEM134 (ENSECAG00000016857) #25	CABP4 (ENSECAG00000016408) #26	GPR152 (ENSECAG00000016385) #27	CORO1B (ENSECAG00000014882) #28	PTPRCAP (ENSECAG00000014875) #29	RPS6KB2 (ENSECAG00000012221) #30	CARNS1 (ENSECAG00000012116) #31	PPP1CA (ENSECAG00000010532) #33	TBC1D10C (ENSECAG00000012029) #32	RAD9A (ENSECAG00000010129) #34	CLCF1 (ENSECAG00000010091) #35	ENSECAG00000010008 #36	SSH3 (ENSECAG00000009653) #37
Donkey	MODERN SPECIES	21	CHKA (ENSEASG00005006007) #8	TCIRG1 (ENSEASG00005006001) #9	NDUFS8 (ENSEASG00005005999) #10	ENSEASG00005005998 ##14	UNC93B1 (ENSEASG00005005996) #12	ENSEASG00005034466	ALDH3B2 (ENSEASG00005005982) #14	TBX10 (ENSEASG00005005973) #16	ENSEASG00005005969	ENSEASG00005005966 #18	NDUFV1 (ENSEASG00005005962) #19	ENSEASG00005026638	ENSEASG00005005960	ENSEASG00005005953	CABP2 (ENSEASG00005005950) #21	CDK2AP2 (ENSEASG00005005947) #22	PITPNM1 (ENSEASG00005005939) #23	AIP (ENSEASG00005005936) #24	TMEM134 (ENSEASG00005035157) #25	CABP4 (ENSEASG00005005930) #26	GPR152 (ENSEASG00005005928) #27	CORO1B (ENSEASG00005005926) #28	PTPRCAP (ENSEASG00005005924) #29	RPS6KB2 (ENSEASG00005005920) #30	CARNS1 (ENSEASG00005005916) #31	TBC1D10C (ENSEASG00005005914) #32	PPP1CA (ENSEASG00005005876) #33	ENSEASG00005005863 #34	CLCF1 (ENSEASG00005030157) #35	ENSEASG00005028320 #36	SSH3 (ENSEASG00005005855) #37
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.e.a	ENSGT01100000264273	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Suina	ANCESTRAL SPECIES	14	ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.e.a	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Pig	MODERN SPECIES	10	ENSSSCG00000012886	KMT5B (ENSSSCG00000031459)	CHKA (ENSSSCG00000012889) #8	TCIRG1 (ENSSSCG00000012890) #9	NDUFS8 (ENSSSCG00000037455) #10	ENSSSCG00000028501 ##14	UNC93B1 (ENSSSCG00000012893) #12	ALDH3B2 (ENSSSCG00000026349) #14	TBX10 (ENSSSCG00000034410) #16	ENSSSCG00000035645	ENSSSCG00000052603 #18	NDUFV1 (ENSSSCG00000012896) #19	ENSSSCG00000032003	ENSSSCG00000060071	CABP2 (ENSSSCG00000020764) #21	CDK2AP2 (ENSSSCG00000012902) #22	PITPNM1 (ENSSSCG00000012903) #23	AIP (ENSSSCG00000062981) #24	TMEM134 (ENSSSCG00000012905) #25	CABP4 (ENSSSCG00000012906) #26	GPR152 (ENSSSCG00000059139) #27	CORO1B (ENSSSCG00000012920) #28	PTPRCAP (ENSSSCG00000012909) #29	RPS6KB2 (ENSSSCG00000012910) #30	CARNS1 (ENSSSCG00000012911) #31	TBC1D10C (ENSSSCG00000012912) #32	PPP1CA (ENSSSCG00000012913) #33	RAD9A (ENSSSCG00000012914) #34	CLCF1 (ENSSSCG00000012915) #35	POLD4 (ENSSSCG00000012916) #36	SSH3 (ENSSSCG00000027956) #37
Chacoan peccary	MODERN SPECIES	921	ENSCWAG00000006195	KMT5B (ENSCWAG00000006216)	CHKA (ENSCWAG00000006285) #8	TCIRG1 (ENSCWAG00000006382) #9	NDUFS8 (ENSCWAG00000006464) #10	ENSCWAG00000006537 ##14	UNC93B1 (ENSCWAG00000006584) #12	ALDH3B2 (ENSCWAG00000006631) #14	TBX10 (ENSCWAG00000006811) #16	ENSCWAG00000006858	ENSCWAG00000006879 #18	NDUFV1 (ENSCWAG00000006939) #19	ENSCWAG00000007036	ENSCWAG00000007049	CABP2 (ENSCWAG00000007074) #21	CDK2AP2 (ENSCWAG00000007150) #22	PITPNM1 (ENSCWAG00000007166) #23	AIP (ENSCWAG00000007192) #24	TMEM134 (ENSCWAG00000007220) #25	CABP4 (ENSCWAG00000007263) #26	GPR152 (ENSCWAG00000007292) #27	CORO1B (ENSCWAG00000007304) #28	PTPRCAP (ENSCWAG00000007330) #29	RPS6KB2 (ENSCWAG00000007341) #30	CARNS1 (ENSCWAG00000007375) #31	TBC1D10C (ENSCWAG00000007510) #32	ENSCWAG00000007570 #33	RAD9A (ENSCWAG00000007635) #34	CLCF1 (ENSCWAG00000007645) #35	POLD4 (ENSCWAG00000007670) #36	ENSCWAG00000007703 #37
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.e.a	ENSGT01100000264273	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Camelidae	ANCESTRAL SPECIES	18	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #14	ENSGT00940000163374.g	ENSGT00940000163889 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.e.a	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37	ENSGT00950000182928.A.a.b
Alpaca	MODERN SPECIES	1782																CDK2AP2 (ENSVPAG00000004070) #22
Arabian camel	MODERN SPECIES	1	KMT5B (ENSCDRG00005008575)	CHKA (ENSCDRG00005008677) #8	TCIRG1 (ENSCDRG00005009035) #9	NDUFS8 (ENSCDRG00005009196) #10	ALDH3B1 (ENSCDRG00005009325) #11	UNC93B1 (ENSCDRG00005009668) #12	ENSCDRG00005009764	ALDH3B2 (ENSCDRG00005009823) #14	ENSCDRG00005009949	NUDT8 (ENSCDRG00005009988) #17	ENSCDRG00005010025 #18	NDUFV1 (ENSCDRG00005010077) #19	GSTP1-1 (ENSCDRG00005010333)	ENSCDRG00005010431	CABP2 (ENSCDRG00005010465) #21	CDK2AP2 (ENSCDRG00005010661) #22	PITPNM1 (ENSCDRG00005010686) #23	AIP (ENSCDRG00005010788) #24	ENSCDRG00005010854 #25	CABP4 (ENSCDRG00005011171) #26	GPR152 (ENSCDRG00005011272) #27	CORO1B (ENSCDRG00005011291) #28	RPS6KB2 (ENSCDRG00005011373) #30	CARNS1 (ENSCDRG00005011445) #31	TBC1D10C (ENSCDRG00005011591) #32	PPP1CA (ENSCDRG00005011737) #33	RAD9A (ENSCDRG00005011885) #34	CLCF1 (ENSCDRG00005011923) #35	POLD4 (ENSCDRG00005011964) #36	SSH3 (ENSCDRG00005012079) #37	ANKRD13D (ENSCDRG00005012263)
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT01100000264273	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Cetacea	ANCESTRAL SPECIES	4	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Blue whale	MODERN SPECIES		ENSBMSG00010000549	B3GALT2 (ENSBMSG00010000463)	CDC73 (ENSBMSG00010000363)	GLRX2 (ENSBMSG00010000297)	RO60 (ENSBMSG00010000248)	ENSBMSG00010000189	ENSBMSG00010000156	RGS2 (ENSBMSG00010000121)	RGS13 (ENSBMSG00010000086)	RGS1 (ENSBMSG00010000063)	RGS21 (ENSBMSG00010000034)	RGS18 (ENSBMSG00010000021)	ENSBMSG00010004812	ENSBMSG00010004804	BRINP3 (ENSBMSG00010004798)	ENSBMSG00010004791 #22	ENSBMSG00010004763	ENSBMSG00010004741	KCTD3 (ENSBMSG00010004710)	USH2A (ENSBMSG00010004301)	ESRRG (ENSBMSG00010004215)	GPATCH2 (ENSBMSG00010004185)	SPATA17 (ENSBMSG00010004163)	RRP15 (ENSBMSG00010004149)	TGFB2 (ENSBMSG00010004097)	LYPLAL1 (ENSBMSG00010004063)	SLC30A10 (ENSBMSG00010004048)	EPRS1 (ENSBMSG00010004027)	BPNT1 (ENSBMSG00010003971)	IARS2 (ENSBMSG00010003944)	RAB3GAP2 (ENSBMSG00010003907)
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Sperm whale	MODERN SPECIES	97														ENSPCTG00005022609	CABP2 (ENSPCTG00005022608) #21	CDK2AP2 (ENSPCTG00005022607) #22	PITPNM1 (ENSPCTG00005022605) #23	AIP (ENSPCTG00005022604) #24	TMEM134 (ENSPCTG00005022602) #25	CABP4 (ENSPCTG00005022601) #26	GPR152 (ENSPCTG00005022600) #27	CORO1B (ENSPCTG00005022599) #28	PTPRCAP (ENSPCTG00005022598) #29	RPS6KB2 (ENSPCTG00005022597) #30	CARNS1 (ENSPCTG00005022594) #31	TBC1D10C (ENSPCTG00005022589) #32	PPP1CA (ENSPCTG00005022585) #33	RAD9A (ENSPCTG00005022584) #34
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00940000156431.jb	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Dolphin	MODERN SPECIES	1942															CABP2 (ENSTTRG00000013269) #21	CDK2AP2 (ENSTTRG00000013268) #22	PITPNM1 (ENSTTRG00000013267) #23	AIP (ENSTTRG00000013265) #24	TMEM134 (ENSTTRG00000013264) #25	CABP4 (ENSTTRG00000013261) #26	GPR152 (ENSTTRG00000013260) #27	CORO1B (ENSTTRG00000013257) #28	PTPRCAP (ENSTTRG00000013255) #29	RPS6KB2 (ENSTTRG00000013251) #30	ENSTTRG00000013249 #31	TBC1D10C (ENSTTRG00000013242) #32	PPP1CA (ENSTTRG00000013233) #33	RAD9A (ENSTTRG00000013208) #34
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00940000153377.B	ENSGT00940000156431.jb	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Vaquita	MODERN SPECIES	19	LRP5 (ENSPSNG00000013733)	ENSPSNG00000013665	KMT5B (ENSPSNG00000013500)	CHKA (ENSPSNG00000013362) #8	TCIRG1 (ENSPSNG00000013176) #9	NDUFS8 (ENSPSNG00000013024) #10	ENSPSNG00000012832 ##14	UNC93B1 (ENSPSNG00000012748) #12	ALDH3B2 (ENSPSNG00000012373) #14	TBX10 (ENSPSNG00000012218) #16	ENSPSNG00000012192	NDUFV1 (ENSPSNG00000012099) #19	ENSPSNG00000012038	ENSPSNG00000011890	CABP2 (ENSPSNG00000011691) #21	CDK2AP2 (ENSPSNG00000011634) #22	PITPNM1 (ENSPSNG00000011535) #23	AIP (ENSPSNG00000011463) #24	TMEM134 (ENSPSNG00000011362) #25	CABP4 (ENSPSNG00000011189) #26	GPR152 (ENSPSNG00000011149) #27	CORO1B (ENSPSNG00000011096) #28	PTPRCAP (ENSPSNG00000011039) #29	RPS6KB2 (ENSPSNG00000010990) #30	CARNS1 (ENSPSNG00000010738) #31	TBC1D10C (ENSPSNG00000010641) #32	PPP1CA (ENSPSNG00000010502) #33	RAD9A (ENSPSNG00000010444) #34	CLCF1 (ENSPSNG00000010372) #35	POLD4 (ENSPSNG00000010304) #36	SSH3 (ENSPSNG00000010029) #37
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00940000156431.jb	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Narwhal	MODERN SPECIES	314	ENSMMNG00015020790	KMT5B (ENSMMNG00015020754)	CHKA (ENSMMNG00015020690) #8	TCIRG1 (ENSMMNG00015020611) #9	NDUFS8 (ENSMMNG00015020550) #10	ALDH3B1 (ENSMMNG00015020460) #11	UNC93B1 (ENSMMNG00015020395) #12	ALDH3B2 (ENSMMNG00015020368) #14	TBX10 (ENSMMNG00015020328) #16	ENSMMNG00015020305	ENSMMNG00015020291 #18	NDUFV1 (ENSMMNG00015020258) #19	ENSMMNG00015020229	ENSMMNG00015020200	CABP2 (ENSMMNG00015020136) #21	CDK2AP2 (ENSMMNG00015020090) #22	PITPNM1 (ENSMMNG00015020033) #23	AIP (ENSMMNG00015019982) #24	TMEM134 (ENSMMNG00015019872) #25	CABP4 (ENSMMNG00015019821) #26	GPR152 (ENSMMNG00015019803) #27	CORO1B (ENSMMNG00015019765) #28	PTPRCAP (ENSMMNG00015019739) #29	RPS6KB2 (ENSMMNG00015019710) #30	CARNS1 (ENSMMNG00015019617) #31	TBC1D10C (ENSMMNG00015019565) #32	PPP1CA (ENSMMNG00015019512) #33	RAD9A (ENSMMNG00015019448) #34	CLCF1 (ENSMMNG00015019402) #35	POLD4 (ENSMMNG00015019361) #36	SSH3 (ENSMMNG00015019247) #37
Beluga whale	MODERN SPECIES	7	ENSDLEG00000007238	KMT5B (ENSDLEG00000007251)	CHKA (ENSDLEG00000007265) #8	TCIRG1 (ENSDLEG00000007283) #9	NDUFS8 (ENSDLEG00000007301) #10	ENSDLEG00000007316 ##14	UNC93B1 (ENSDLEG00000007327) #12	ENSDLEG00000007341 #14	TBX10 (ENSDLEG00000007345) #16	ENSDLEG00000007357	ENSDLEG00000007368 #18	NDUFV1 (ENSDLEG00000007370) #19	ENSDLEG00000007379	ENSDLEG00000007392	CABP2 (ENSDLEG00000007398) #21	CDK2AP2 (ENSDLEG00000007407) #22	PITPNM1 (ENSDLEG00000007424) #23	AIP (ENSDLEG00000007462) #24	TMEM134 (ENSDLEG00000007472) #25	CABP4 (ENSDLEG00000007479) #26	GPR152 (ENSDLEG00000007487) #27	CORO1B (ENSDLEG00000007489) #28	RPS6KB2 (ENSDLEG00000007496) #30	PTPRCAP (ENSDLEG00000007502) #29	CARNS1 (ENSDLEG00000007504) #31	TBC1D10C (ENSDLEG00000007507) #32	PPP1CA (ENSDLEG00000000041) #33	RAD9A (ENSDLEG00000000070) #34	CLCF1 (ENSDLEG00000000088) #35	ENSDLEG00000000120 #36	SSH3 (ENSDLEG00000000182) #37
Pecora	ANCESTRAL SPECIES	13	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #14	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT01100000264273	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Yarkand deer	MODERN SPECIES	11	KMT5B (ENSCHYG00000003849)	CHKA (ENSCHYG00000003799) #8	TCIRG1 (ENSCHYG00000003734) #9	NDUFS8 (ENSCHYG00000003690) #10	ALDH3B1 (ENSCHYG00000003612) #11	UNC93B1 (ENSCHYG00000003557) #12	ENSCHYG00000003548	ALDH3B2 (ENSCHYG00000003514) #14	TBX10 (ENSCHYG00000003486) #16	ENSCHYG00000003477	ENSCHYG00000003458 #18	NDUFV1 (ENSCHYG00000003440) #19	ENSCHYG00000003427	ENSCHYG00000003387	CABP2 (ENSCHYG00000003335) #21	CDK2AP2 (ENSCHYG00000003302) #22	PITPNM1 (ENSCHYG00000003166) #23	AIP (ENSCHYG00000003119) #24	TMEM134 (ENSCHYG00000003047) #25	CABP4 (ENSCHYG00000003019) #26	GPR152 (ENSCHYG00000003011) #27	CORO1B (ENSCHYG00000002991) #28	PTPRCAP (ENSCHYG00000002984) #29	RPS6KB2 (ENSCHYG00000002967) #30	CARNS1 (ENSCHYG00000002924) #31	TBC1D10C (ENSCHYG00000002870) #32	PPP1CA (ENSCHYG00000002815) #33	RAD9A (ENSCHYG00000002779) #34	CLCF1 (ENSCHYG00000002752) #35	ENSCHYG00000002737 #36	ENSCHYG00000002718
Percora_a	ANCESTRAL SPECIES	16	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #14	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT01100000264273	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Siberian musk deer	MODERN SPECIES	1226	KMT5B (ENSMMSG00000023533)	CHKA (ENSMMSG00000023562) #8	TCIRG1 (ENSMMSG00000023600) #9	NDUFS8 (ENSMMSG00000023617) #10	ENSMMSG00000023640 ##14	UNC93B1 (ENSMMSG00000023668) #12	ALDH3B2 (ENSMMSG00000023685) #14	TBX10 (ENSMMSG00000023697) #16	ENSMMSG00000023700	ENSMMSG00000023706	ENSMMSG00000023708 #18	NDUFV1 (ENSMMSG00000023713) #19	ENSMMSG00000023730	ENSMMSG00000023744	CABP2 (ENSMMSG00000023763) #21	CDK2AP2 (ENSMMSG00000023774) #22	PITPNM1 (ENSMMSG00000023779) #23	AIP (ENSMMSG00000023787) #24	ENSMMSG00000023795 #25	CABP4 (ENSMMSG00000023807) #26	GPR152 (ENSMMSG00000023822) #27	CORO1B (ENSMMSG00000023829) #28	PTPRCAP (ENSMMSG00000023838) #29	RPS6KB2 (ENSMMSG00000023844) #30	CARNS1 (ENSMMSG00000023862) #31	TBC1D10C (ENSMMSG00000023882) #32	PPP1CA (ENSMMSG00000023894) #33	RAD9A (ENSMMSG00000023915) #34	CLCF1 (ENSMMSG00000023932) #35	POLD4 (ENSMMSG00000023941) #36	SSH3 (ENSMMSG00000023947) #37
Bovidae	ANCESTRAL SPECIES	16	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #14	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT01100000264273	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Caprinae	ANCESTRAL SPECIES	20	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #14	ENSGT00940000154816.a.a #16	ENSGT00940000163889 #17	ENSGT00940000163374.g	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00990000203796	ENSGT00960000189182	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36
Rambouillet Sheep	MODERN SPECIES	13	CHKA (ENSOARG00020014607) #8	ENSOARG00020014508 #9	ENSOARG00020014473 #9	NDUFS8 (ENSOARG00020014383) #10	ENSOARG00020014110 ##14	UNC93B1 (ENSOARG00020014035) #12	ENSOARG00020014001	ALDH3B2 (ENSOARG00020013912) #14	TBX10 (ENSOARG00020013801) #16	NUDT8 (ENSOARG00020013703) #17	ENSOARG00020013607 #18	NDUFV1 (ENSOARG00020013585) #19	ENSOARG00020013487	ENSOARG00020013368	CABP2 (ENSOARG00020013080) #21	CDK2AP2 (ENSOARG00020013021) #22	PITPNM1 (ENSOARG00020012916) #23	AIP (ENSOARG00020012864) #24	TMEM134 (ENSOARG00020012668) #25	CABP4 (ENSOARG00020012475) #26	GPR152 (ENSOARG00020012440) #27	CORO1B (ENSOARG00020012381) #28	PTPRCAP (ENSOARG00020012324) #29	RPS6KB2 (ENSOARG00020012258) #30	ENSOARG00020011906	TBC1D10C (ENSOARG00020011852) #32	PPP1CA (ENSOARG00020011637) #33	RAD9A (ENSOARG00020011511) #34	CLCF1 (ENSOARG00020011455) #35	POLD4 (ENSOARG00020011352) #36	ENSOARG00020011311 #37
Goat	MODERN SPECIES	21	ENSCHIG00000016165	KMT5B (ENSCHIG00000025585)	CHKA (ENSCHIG00000014786) #8	TCIRG1 (ENSCHIG00000021975) #9	ENSCHIG00000013308 #10	ENSCHIG00000026059 ##14	UNC93B1 (ENSCHIG00000026943) #12	ALDH3B2 (ENSCHIG00000016769) #14	ENSCHIG00000026949	ENSCHIG00000019709	ENSCHIG00000020228 #18	NDUFV1 (ENSCHIG00000022888) #19	ENSCHIG00000014133	ENSCHIG00000015669	CABP2 (ENSCHIG00000009106) #21	CDK2AP2 (ENSCHIG00000021025) #22	PITPNM1 (ENSCHIG00000000979) #23	ENSCHIG00000025314 #24	TMEM134 (ENSCHIG00000013846) #25	CABP4 (ENSCHIG00000012267) #26	GPR152 (ENSCHIG00000007197) #27	ENSCHIG00000015350	ENSCHIG00000023617	ENSCHIG00000011158	AP2A2 (ENSCHIG00000025368)	CHID1 (ENSCHIG00000023896)	ENSCHIG00000016060	ENSCHIG00000026593	ENSCHIG00000007736	ENSCHIG00000019798	IFITM5 (ENSCHIG00000022929)
Bovinae	ANCESTRAL SPECIES	24	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #14	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT01100000264273	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
American bison	MODERN SPECIES	3011	LRP5 (ENSBBBG00000007211)	ENSBBBG00000008495	KMT5B (ENSBBBG00000011927)	CHKA (ENSBBBG00000002204) #8	TCIRG1 (ENSBBBG00000011829) #9	NDUFS8 (ENSBBBG00000011803) #10	ENSBBBG00000008099 ##14	UNC93B1 (ENSBBBG00000011762) #12	ALDH3B2 (ENSBBBG00000011745) #14	TBX10 (ENSBBBG00000011733) #16	ENSBBBG00000002170	NDUFV1 (ENSBBBG00000006837) #19	ENSBBBG00000011688	ENSBBBG00000011647	CABP2 (ENSBBBG00000002134) #21	CDK2AP2 (ENSBBBG00000011578) #22	PITPNM1 (ENSBBBG00000011566) #23	AIP (ENSBBBG00000011499) #24	TMEM134 (ENSBBBG00000011488) #25	CABP4 (ENSBBBG00000011461) #26	GPR152 (ENSBBBG00000008097) #27	CORO1B (ENSBBBG00000011439) #28	PTPRCAP (ENSBBBG00000011426) #29	RPS6KB2 (ENSBBBG00000011423) #30	ENSBBBG00000011410	TBC1D10C (ENSBBBG00000002019) #32	PPP1CA (ENSBBBG00000002073) #33	RAD9A (ENSBBBG00000011271) #34	CLCF1 (ENSBBBG00000011254) #35	POLD4 (ENSBBBG00000011249) #36	SSH3 (ENSBBBG00000011241) #37
Bos	ANCESTRAL SPECIES	11	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #14	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT01100000264273	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Bos_a	ANCESTRAL SPECIES	34	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.f ##14	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #14	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Wild yak	MODERN SPECIES	1533							UNC93B1 (ENSBMUG00000022067) #12	ENSBMUG00000022057	ALDH3B2 (ENSBMUG00000022044) #14	TBX10 (ENSBMUG00000022029) #16	ENSBMUG00000022014	ENSBMUG00000021996 #18	NDUFV1 (ENSBMUG00000021947) #19	ENSBMUG00000021831	CABP2 (ENSBMUG00000021781) #21	CDK2AP2 (ENSBMUG00000021758) #22	PITPNM1 (ENSBMUG00000021743) #23	AIP (ENSBMUG00000021692) #24	ENSBMUG00000021649 #25	CABP4 (ENSBMUG00000021589) #26	GPR152 (ENSBMUG00000021581) #27	CORO1B (ENSBMUG00000021562) #28	ENSBMUG00000021528 #29	RPS6KB2 (ENSBMUG00000021523) #30	CARNS1 (ENSBMUG00000021512) #31	TBC1D10C (ENSBMUG00000021479) #32	PPP1CA (ENSBMUG00000021462) #33	RAD9A (ENSBMUG00000021453) #34	CLCF1 (ENSBMUG00000021437) #35	POLD4 (ENSBMUG00000021428) #36	SSH3 (ENSBMUG00000021417) #37
Domestic yak	MODERN SPECIES	21	FGF4 (ENSBGRG00000024355)	ENSBGRG00000024377	ENSBGRG00000024404	CCND1 (ENSBGRG00000024441)	ENSBGRG00000008155	ENSBGRG00000008216	ENSBGRG00000008684	ENSBGRG00000008704	ENSBGRG00000012448 ##14	ENSBGRG00000012721 #12	TBX10 (ENSBGRG00000013152) #16	NDUFV1 (ENSBGRG00000013540) #19	ENSBGRG00000013805	ENSBGRG00000013866	CABP2 (ENSBGRG00000013947) #21	CDK2AP2 (ENSBGRG00000014064) #22	ENSBGRG00000014144 #23	ENSBGRG00000014533	CORO1B (ENSBGRG00000014832) #28	PPP1CA (ENSBGRG00000017991) #33	ENSBGRG00000018373	ENSBGRG00000018673	ENSBGRG00000019717	ENSBGRG00000021808	ENSBGRG00000022112	ENSBGRG00000022387	ENSBGRG00000022563	CCS (ENSBGRG00000022678)	ENSBGRG00000023725	ENSBGRG00000025656	YIF1A (ENSBGRG00000025666)
Bos_b	ANCESTRAL SPECIES	10	ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00940000154816.a.a #16	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT01100000264273	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Cow	MODERN SPECIES	21	LRP5 (ENSBTAG00000005903)	C29H11orf24 (ENSBTAG00000004392)	KMT5B (ENSBTAG00000001185)	CHKA (ENSBTAG00000010304) #8	TCIRG1 (ENSBTAG00000000292) #9	NDUFS8 (ENSBTAG00000012072) #10	ALDH3B1 (ENSBTAG00000013093) ##14	UNC93B1 (ENSBTAG00000001193) #12	ENSBTAG00000012054 #14	TBX10 (ENSBTAG00000011816) #16	DOC2G (ENSBTAG00000021777) #18	NDUFV1 (ENSBTAG00000021776) #19	GSTP1 (ENSBTAG00000051210)	GSTP1 (ENSBTAG00000003548)	CABP2 (ENSBTAG00000022209) #21	CDK2AP2 (ENSBTAG00000002121) #22	PITPNM1 (ENSBTAG00000010482) #23	AIP (ENSBTAG00000010478) #24	TMEM134 (ENSBTAG00000004786) #25	CABP4 (ENSBTAG00000004785) #26	GPR152 (ENSBTAG00000046728) #27	CORO1B (ENSBTAG00000004783) #28	PTPRCAP (ENSBTAG00000004782) #29	RPS6KB2 (ENSBTAG00000009175) #30	CARNS1 (ENSBTAG00000017690) #31	TBC1D10C (ENSBTAG00000013133) #32	PPP1CA (ENSBTAG00000012146) #33	RAD9A (ENSBTAG00000012141) #34	CLCF1 (ENSBTAG00000046110) #35	POLD4 (ENSBTAG00000017951) #36	SSH3 (ENSBTAG00000031590) #37
Hybrid Bos Indicus	MODERN SPECIES	21	ENSBIXG00005021753	ENSBIXG00005021733	KMT5B (ENSBIXG00005021706)	ENSBIXG00005006157 #8	TCIRG1 (ENSBIXG00005021556) #9	NDUFS8 (ENSBIXG00005006662) #10	ENSBIXG00005021420 ##14	UNC93B1 (ENSBIXG00005021297) #12	ENSBIXG00005021275 #14	TBX10 (ENSBIXG00005021245) #16	ENSBIXG00005007675 #18	NDUFV1 (ENSBIXG00005021193) #19	ENSBIXG00005021129	ENSBIXG00005021109	CABP2 (ENSBIXG00005021047) #21	ENSBIXG00005020965 #22	PITPNM1 (ENSBIXG00005003531) #23	AIP (ENSBIXG00005020736) #24	TMEM134 (ENSBIXG00005003498) #25	CABP4 (ENSBIXG00005003484) #26	GPR152 (ENSBIXG00005007302) #27	CORO1B (ENSBIXG00005020573) #28	PTPRCAP (ENSBIXG00005020556) #29	RPS6KB2 (ENSBIXG00005007154) #30	CARNS1 (ENSBIXG00005020507) #31	TBC1D10C (ENSBIXG00005020430) #32	PPP1CA (ENSBIXG00005003445) #33	RAD9A (ENSBIXG00005020343) #34	ENSBIXG00005005868 #35	ENSBIXG00005007206 #36	SSH3 (ENSBIXG00005020249) #37
Atlantogenata	ANCESTRAL SPECIES	17	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000163889 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Xenarthra	ANCESTRAL SPECIES	35	ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37	ENSGT00950000182928.A.a.b	ENSGT00940000155484
Armadillo	MODERN SPECIES	4298	KMT5B (ENSDNOG00000039986)	ENSDNOG00000049704	CHKA (ENSDNOG00000023787) #8	TCIRG1 (ENSDNOG00000002682) #9	NDUFS8 (ENSDNOG00000036530) #10	ENSDNOG00000037144 ##14	UNC93B1 (ENSDNOG00000038644) #12	ALDH3B2 (ENSDNOG00000005545) #14	ACY3 (ENSDNOG00000040590) #15	TBX10 (ENSDNOG00000025226) #16	ENSDNOG00000034928 #18	NDUFV1 (ENSDNOG00000007356) #19	GSTP1 (ENSDNOG00000035023) #20	ENSDNOG00000046765	CABP2 (ENSDNOG00000046652) #21	CDK2AP2 (ENSDNOG00000033375) #22	ENSDNOG00000043892 #23	AIP (ENSDNOG00000042576) #24	CABP4 (ENSDNOG00000046240) #26	GPR152 (ENSDNOG00000033395) #27	CORO1B (ENSDNOG00000002044) #28	PTPRCAP (ENSDNOG00000034706) #29	RPS6KB2 (ENSDNOG00000041769) #30	TBC1D10C (ENSDNOG00000037883) #32	PPP1CA (ENSDNOG00000042750) #33	RAD9A (ENSDNOG00000039829) #34	CLCF1 (ENSDNOG00000044435) #35	POLD4 (ENSDNOG00000035470) #36	ENSDNOG00000032805	SSH3 (ENSDNOG00000039703) #37	ANKRD13D (ENSDNOG00000002857)
Afrotheria	ANCESTRAL SPECIES	9	ENSGT00390000009899.a.d	ENSGT00940000156574.C	ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00940000154816.a.a #16	ENSGT00940000163889 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Afrotheria_a	ANCESTRAL SPECIES	9	ENSGT00390000009899.a.d	ENSGT00940000156574.C	ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a ##14	ENSGT00530000063359.B #12	ENSGT00940000154816.a.a #16	ENSGT00940000163889 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Hyrax	MODERN SPECIES	5783															CABP2 (ENSPCAG00000008970) #21	CDK2AP2 (ENSPCAG00000008952) #22	PITPNM1 (ENSPCAG00000008848) #23	AIP (ENSPCAG00000008812) #24	ENSPCAG00000008770 #25	CABP4 (ENSPCAG00000008736) #26	GPR152 (ENSPCAG00000008723) #27	CORO1B (ENSPCAG00000008674) #28	PTPRCAP (ENSPCAG00000008661) #29	RPS6KB2 (ENSPCAG00000008582) #30	TBC1D10C (ENSPCAG00000008533) #32	PPP1CA (ENSPCAG00000008488) #33	RAD9A (ENSPCAG00000008438) #34	CLCF1 (ENSPCAG00000008411) #35	POLD4 (ENSPCAG00000008381) #36
Elephant	MODERN SPECIES	532	LRP5 (ENSLAFG00000008300)	ENSLAFG00000006321	KMT5B (ENSLAFG00000006490)	CHKA (ENSLAFG00000009985) #8	TCIRG1 (ENSLAFG00000009983) #9	NDUFS8 (ENSLAFG00000006283) #10	ENSLAFG00000009402 ##14	UNC93B1 (ENSLAFG00000009400) #12	ENSLAFG00000031633 ##14	TBX10 (ENSLAFG00000022296) #16	NUDT8 (ENSLAFG00000015108) #17	ENSLAFG00000030851 #18	NDUFV1 (ENSLAFG00000022729) #19	GSTP1 (ENSLAFG00000022378) #20	CABP2 (ENSLAFG00000000855) #21	CDK2AP2 (ENSLAFG00000010947) #22	PITPNM1 (ENSLAFG00000022098) #23	AIP (ENSLAFG00000005289) #24	ENSLAFG00000032093	ENSLAFG00000003585 #26	ENSLAFG00000028907	CORO1B (ENSLAFG00000008929) #28	PTPRCAP (ENSLAFG00000022927) #29	RPS6KB2 (ENSLAFG00000008925) #30	ENSLAFG00000030838 #31	TBC1D10C (ENSLAFG00000029168) #32	PPP1CA (ENSLAFG00000022802) #33	RAD9A (ENSLAFG00000008918) #34	CLCF1 (ENSLAFG00000010943) #35	POLD4 (ENSLAFG00000025827) #36	SSH3 (ENSLAFG00000002413) #37
Tenrec	MODERN SPECIES	15452																CDK2AP2 (ENSETEG00000006428) #22
Marsupialia	ANCESTRAL SPECIES	12	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.c #14	ENSGT00530000063359.B #12	ENSGT00940000155904.d #14	ENSGT00390000001189.b #15	ENSGT00940000163374	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Marsupialia_b	ANCESTRAL SPECIES	15	ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.c #14	ENSGT00530000063359.B #12	ENSGT00940000155904.d #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Diprotodontia	ANCESTRAL SPECIES	27	ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b.e #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.c #14	ENSGT00530000063359.B #12	ENSGT00940000155904.d #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460.p #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Diprotodontia_a	ANCESTRAL SPECIES	15	ENSGT00940000153377.B	ENSGT00940000156431	ENSGT00950000182939.a.b.b.e #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.c #14	ENSGT00530000063359.B #12	ENSGT00940000155904.d #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460.p #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a.g #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Common wonbat	MODERN SPECIES	714	KMT5B (ENSVURG00010024629)	CHKA (ENSVURG00010024636) #8	TCIRG1 (ENSVURG00010024654) #9	NDUFS8 (ENSVURG00010024656) #10	ENSVURG00010024659 #14	UNC93B1 (ENSVURG00010024662) #12	ENSVURG00010024664 #14	ENSVURG00010024665 #15	TBX10 (ENSVURG00010024668) #16	ENSVURG00010024670	ENSVURG00010024674 #18	NDUFV1 (ENSVURG00010024680) #19	ENSVURG00010024685 #20	ENSVURG00010024689 #20	CABP2 (ENSVURG00010024694) #21	CDK2AP2 (ENSVURG00010024697) #22	PITPNM1 (ENSVURG00010024698) #23	TMEM134 (ENSVURG00010024702) #25	CABP4 (ENSVURG00010024706) #26	CORO1B (ENSVURG00010024714) #28	ENSVURG00010024721 #29	ENSVURG00010024722 #30	CARNS1 (ENSVURG00010024729) #31	TBC1D10C (ENSVURG00010024747) #32	PPP1CA (ENSVURG00010024750) #33	RAD9A (ENSVURG00010024753) #34	CLCF1 (ENSVURG00010024754) #35	POLD4 (ENSVURG00010024756) #36	SSH3 (ENSVURG00010024758) #37	ANKRD13D (ENSVURG00010024763)	GRK2 (ENSVURG00010024770)
Wallaby	MODERN SPECIES	12085																CDK2AP2 (ENSMEUG00000005961) #22
Opossum	MODERN SPECIES	321			PPP6R3 (ENSMODG00000021324)	ENSMODG00000027757	KMT5B (ENSMODG00000051228)	CHKA (ENSMODG00000021329) #8	ENSMODG00000021330 #9	ENSMODG00000044090	ENSMODG00000021331 #14	UNC93B1 (ENSMODG00000021332) #12	ENSMODG00000049516 #15	ENSMODG00000021334	NDUFV1 (ENSMODG00000021336) #19	GSTP1 (ENSMODG00000041139) #20	CABP2 (ENSMODG00000037024) #21	CDK2AP2 (ENSMODG00000021339) #22
Platypus	MODERN SPECIES	14	MRPL21 (ENSOANG00000006870)	ENSOANG00000049607	PPP6R3 (ENSOANG00000009636)	ENSOANG00000047290	KMT5B (ENSOANG00000048478)	CHKA (ENSOANG00000048770) #8	NDUFS8 (ENSOANG00000050025) #10	ENSOANG00000050870 #14	UNC93B1 (ENSOANG00000036137) #12	ENSOANG00000047139 #14	ACY3 (ENSOANG00000029117) #15	ENSOANG00000038879 ##16	ENSOANG00000046295 #17	NDUFV1 (ENSOANG00000042354) #19	GSTP1 (ENSOANG00000037742) #20	CDK2AP2 (ENSOANG00000046933) #22	PITPNM1 (ENSOANG00000040791) #23	AIP (ENSOANG00000037575) #24	ENSOANG00000042594 #25	ENSOANG00000050449 #26	ENSOANG00000050272	CORO1B (ENSOANG00000047940) #28	ENSOANG00000050645 #29	RPS6KB2 (ENSOANG00000036266) #30	CARNS1 (ENSOANG00000005965) #31	PPP1CA (ENSOANG00000011413) #33	RAD9A (ENSOANG00000011414) #34	ENSOANG00000046031 #35	ENSOANG00000038827 #36	SSH3 (ENSOANG00000039995) #37	ANKRD13D (ENSOANG00000044186)
Sauria	ANCESTRAL SPECIES	75												ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000000020.b	ENSGT00940000154885.C	ENSGT00940000160201	ENSGT00390000003450	ENSGT00390000000972	ENSGT00940000156521.b	ENSGT00940000158908	ENSGT00390000011163	ENSGT00940000160477	ENSGT00940000157848	ENSGT00950000183128.C	ENSGT00530000064011	ENSGT00530000063359.B #12
Lepidosauria	ANCESTRAL SPECIES	64											ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000163435	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000000020.b	ENSGT00940000154885.C	ENSGT00940000160201	ENSGT00390000003450	ENSGT00390000000972	ENSGT00940000156521.b	ENSGT00940000158908	ENSGT00390000011163	ENSGT00940000160477	ENSGT00940000157848	ENSGT00950000183128.C	ENSGT00530000064011	ENSGT00530000063359.B #12
Episquamata	ANCESTRAL SPECIES		ENSGT00940000161414	ENSGT00390000015704	ENSGT00940000153662.A	ENSGT00940000161188.d	ENSGT01010000222336.a.a.b	ENSGT00390000017281	ENSGT01100000263494.a.b.b.b	ENSGT00960000191015	ENSGT00950000183022.b	ENSGT00940000158212.B	ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000163435	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT01030000234567.B.b.bb	ENSGT00530000063370.a.b	ENSGT00530000063370.a.a	ENSGT00390000002038	ENSGT01030000234627.a.b.a.a	ENSGT00940000175288	ENSGT01060000248581.A.a.a.b.c.a	ENSGT00520000055649.a	ENSGT00940000156164	ENSGT01050000244842.a.b.b.b.m	ENSGT00390000005182	ENSGT00390000008048	ENSGT00940000157122	ENSGT00420000029890
Laterata	DUPLICATION
Laterata	ANCESTRAL SPECIES	2	ENSGT00390000015704	ENSGT00940000153662.A	ENSGT00940000161188.d	ENSGT01010000222336.a.a.b	ENSGT00390000017281	ENSGT01100000263494.a.b.b.b	ENSGT00940000162329.a.b.b.a.a	ENSGT00940000162329.a.b.b.b	ENSGT00940000162443	ENSGT00950000183022.b	ENSGT00940000158212.B	ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334.a #22	ENSGT00940000160334.b #22	ENSGT00940000161522 #23	ENSGT01030000234567.B.b.bb	ENSGT00530000063370.a.a	ENSGT00390000002038	ENSGT01030000234627.a.b.a.a	ENSGT00940000175288	ENSGT01060000248581.A.a.a.b.c.a.a	ENSGT00520000055649.a	ENSGT00940000156164	ENSGT01050000244842.a.b.b.b.m	ENSGT00390000005182	ENSGT00390000008048	ENSGT00940000157122	ENSGT00420000029890
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES		ENSPMRG00000000227	ENSPMRG00000000265	ENSPMRG00000000283	ENSPMRG00000000304	ENSPMRG00000000320	ENSPMRG00000000342	ENSPMRG00000000361	ENSPMRG00000000375	ENSPMRG00000000392	SLC19A1 (ENSPMRG00000000410)	COL18A1 (ENSPMRG00000000503)	ENSPMRG00000000635	NDUFV1 (ENSPMRG00000000653) #19	ENSPMRG00000000675	CABP2 (ENSPMRG00000000695) #21	ENSPMRG00000000711 #22	PITPNM1 (ENSPMRG00000000726) #23	ENSPMRG00000000759	ENSPMRG00000000785	CBLIF (ENSPMRG00000000801)	MRPL16 (ENSPMRG00000000824)	STX3 (ENSPMRG00000000857)	ENSPMRG00000000900	ENSPMRG00000000912	ENSPMRG00000000922	ENSPMRG00000000935	ENSPMRG00000000942	ENSPMRG00000000954	ENSPMRG00000000965	PATL1 (ENSPMRG00000000982)	OSBP (ENSPMRG00000001015)
Common wall lizard	MODERN SPECIES	16	ENSPMRG00000010540	IGSF21 (ENSPMRG00000010536)	ARHGEF10L (ENSPMRG00000010105)	ENSPMRG00000010024	ENSPMRG00000010023	ENSPMRG00000010020	PURB (ENSPMRG00000010017)	H2AZ2 (ENSPMRG00000010009)	ENSPMRG00000010001	ENSPMRG00000009997	ENSPMRG00000009982	ENSPMRG00000009973	MAT2A (ENSPMRG00000009964)	VDAC3 (ENSPMRG00000009951)	ENSPMRG00000009947	ENSPMRG00000009943 #22	IKBKB (ENSPMRG00000009818)	ENSPMRG00000009789	PLAT (ENSPMRG00000020565)	AP3M2 (ENSPMRG00000020552)	KAT6A (ENSPMRG00000020518)	ANK1 (ENSPMRG00000020098)	NKX6-3 (ENSPMRG00000019967)	GPAT4 (ENSPMRG00000019960)	ENSPMRG00000019954	GINS4 (ENSPMRG00000019943)	GOLGA7 (ENSPMRG00000019937)	ENSPMRG00000019931	SFRP1 (ENSPMRG00000019923)	ENSPMRG00000019920	ZMAT4 (ENSPMRG00000019911)
Laterata	ANCESTRAL SPECIES	2	ENSGT00940000153662.A	ENSGT00940000161188.d	ENSGT01010000222336.a.a.b	ENSGT00390000017281	ENSGT01100000263494.a.b.b.b	ENSGT00940000162329.a.b.b.a.a	ENSGT00940000162329.a.b.b.b	ENSGT00940000162443	ENSGT00950000183022.b	ENSGT00940000158212.B	ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334.a #22	ENSGT00940000160334.b #22	ENSGT00940000161522 #23	ENSGT01030000234567.B.b.bb	ENSGT00530000063370.a.a	ENSGT00390000002038	ENSGT01030000234627.a.b.a.a	ENSGT00940000175288	ENSGT01060000248581.A.a.a.b.c.a.a	ENSGT00520000055649.a	ENSGT00940000156164	ENSGT01050000244842.a.b.b.b.m	ENSGT00390000005182	ENSGT00390000008048	ENSGT00940000157122	ENSGT00420000029890	ENSGT00940000156393
Argentine black and white tegu	MODERN SPECIES	40	ENSSMRG00000001576	ENSSMRG00000001568	ENSSMRG00000001557	ENSSMRG00000001546	ENSSMRG00000001538	ENSSMRG00000001528	ENSSMRG00000001497	ENSSMRG00000001512	ENSSMRG00000001457	SLC19A1 (ENSSMRG00000001454)	COL18A1 (ENSSMRG00000001381)	ENSSMRG00000001364	NDUFV1 (ENSSMRG00000001332) #19	GSTP1 (ENSSMRG00000001313) #20	CABP2 (ENSSMRG00000001288) #21	CDK2AP2 (ENSSMRG00000001284) #22	PITPNM1 (ENSSMRG00000001262) #23	TCN1 (ENSSMRG00000001244)	MRPL16 (ENSSMRG00000001243)	STX3 (ENSSMRG00000001241)	ENSSMRG00000001239	PATL1 (ENSSMRG00000001229)	OSBP (ENSSMRG00000001225)	ENSSMRG00000001222	DTX4 (ENSSMRG00000001208)	ENSSMRG00000001170	ENSSMRG00000001166	CNTF (ENSSMRG00000001159)	ZFP91 (ENSSMRG00000001153)	LPXN (ENSSMRG00000001140)	OR10W1 (ENSSMRG00000001134)
Common wall lizard	MODERN SPECIES	11	ENSPMRG00000020513	SLC3A1 (ENSPMRG00000020509)	PPM1B (ENSPMRG00000020500)	ENSPMRG00000020492	LRPPRC (ENSPMRG00000020011)	ABCG8 (ENSPMRG00000019930)	ABCG5 (ENSPMRG00000019878)	DYNC2LI1 (ENSPMRG00000019863)	PLEKHH2 (ENSPMRG00000019508)	THADA (ENSPMRG00000018815)	ZFP36L2 (ENSPMRG00000018692)	ENSPMRG00000018686	ENSPMRG00000018677	HAAO (ENSPMRG00000018662)	MTA3 (ENSPMRG00000018651)	ENSPMRG00000018626 #22	KCNG3 (ENSPMRG00000004849)	ENSPMRG00000004845	COX7A2L (ENSPMRG00000004839)	EML4 (ENSPMRG00000004814)	PKDCC (ENSPMRG00000004794)	BICRAL (ENSPMRG00000004789)	TBCC (ENSPMRG00000004784)	PRPH2 (ENSPMRG00000004781)	ENSPMRG00000004780	ENSPMRG00000004733	TRERF1 (ENSPMRG00000004713)	MRPS10 (ENSPMRG00000004706)	UTP25 (ENSPMRG00000004693)	ENSPMRG00000004684	ENSPMRG00000004681
Toxicofera	ANCESTRAL SPECIES	5	ENSGT00940000161414	ENSGT00390000015704	ENSGT00940000153662.A	ENSGT00940000161188.d	ENSGT01010000222336.a.a.b	ENSGT00390000017281	ENSGT01100000263494.a.b.b.b	ENSGT00960000191015	ENSGT00950000183022.b	ENSGT00940000158212.B	ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000163435	ENSGT00940000159796 #21	ENSGT00940000164685	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT01030000234567.B.b.bb	ENSGT00530000063370.a.b	ENSGT00530000063370.a.a	ENSGT00390000002038	ENSGT01030000234627.a.b.a.a	ENSGT00940000175288	ENSGT01060000248581.A.a.a.b.c.a	ENSGT00520000055649.a	ENSGT00940000156164	ENSGT01050000244842.a.b.b.b.m	ENSGT00390000005182	ENSGT00390000008048	ENSGT00940000157122	ENSGT00420000029890
Elapidae	ANCESTRAL SPECIES	3	ENSGT00390000015704	ENSGT00940000153662.A	ENSGT00940000161188.d	ENSGT01010000222336.a.a.b.k	ENSGT00390000017281	ENSGT01100000263494.a.b.b.b.g.a.b	ENSGT01100000263494.a.b.b.b.g.b	ENSGT00940000162443	ENSGT00940000162329.b.a.b	ENSGT00950000183022.b	ENSGT00940000158212.B	ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000163435	ENSGT00940000164685	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00530000063370.a.a	ENSGT00390000002038	ENSGT01030000234627.a.b.a.a	ENSGT01100000263561.B.l	ENSGT01060000248581.A.a.a.b.c.a	ENSGT00520000055649.a	ENSGT00940000156164	ENSGT01050000244842.a.b.b.b.m	ENSGT00390000005182	ENSGT00390000008048	ENSGT00940000157122	ENSGT00420000029890	ENSGT00940000156393	ENSGT00940000160259
Elapidae_a	ANCESTRAL SPECIES	133								ENSGT00940000162443	ENSGT00940000162329.b.a.b	ENSGT00950000183022.b	ENSGT00940000158212.B	ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000163435	ENSGT00940000164685	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00530000063370.a.a.c	ENSGT00390000002038	ENSGT01030000234627.a.b.a.a	ENSGT01100000263561.B.l	ENSGT00940000175288	ENSGT01060000248581.A.a.a.b.c.a
Acanthophiinae	ANCESTRAL SPECIES	125								ENSGT00940000162443	ENSGT00940000162329.b.a.b	ENSGT00950000183022.b	ENSGT00940000158212.B	ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000163435	ENSGT00940000164685	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00530000063370.a.a.c	ENSGT00390000002038	ENSGT01030000234627.a.b.a.a	ENSGT01100000263561.B.l	ENSGT00940000175288	ENSGT01060000248581.A.a.a.b.c.a
Eastern brown snake	MODERN SPECIES	166					ENSPTXG00000015427	ENSPTXG00000015429	ENSPTXG00000015437	ENSPTXG00000015438	SLC19A1 (ENSPTXG00000015439)	ENSPTXG00000015440	ENSPTXG00000015442	ENSPTXG00000015443	NDUFV1 (ENSPTXG00000015444) #19	ENSPTXG00000015446	ENSPTXG00000015448	CDK2AP2 (ENSPTXG00000015449) #22	PITPNM1 (ENSPTXG00000015450) #23	CBLIF (ENSPTXG00000015485)	MRPL16 (ENSPTXG00000015489)	STX3 (ENSPTXG00000015490)	ENSPTXG00000015492	OR10V1 (ENSPTXG00000015493)
Mainland tiger snake	MODERN SPECIES	250							ENSNSUG00000016775	ENSNSUG00000016774	ENSNSUG00000016773	SLC19A1 (ENSNSUG00000016772)	ENSNSUG00000016771	ENSNSUG00000016768	NDUFV1 (ENSNSUG00000016767) #19	ENSNSUG00000016766	ENSNSUG00000016765	CDK2AP2 (ENSNSUG00000016763) #22	PITPNM1 (ENSNSUG00000016697) #23	ENSNSUG00000016696	ENSNSUG00000016694	ENSNSUG00000016693	MRPL16 (ENSNSUG00000016690)	STX3 (ENSNSUG00000016575)	ENSNSUG00000016574
Blue-lipped sea krait	MODERN SPECIES	4301															ENSLLTG00000008279	CDK2AP2 (ENSLLTG00000008250) #22	ENSLLTG00000008214	PITPNM1 (ENSLLTG00000008177) #23
Indian cobra	MODERN SPECIES		ENSNNAG00000002178	ENSNNAG00000002170	ENSNNAG00000002167	ENSNNAG00000002161	ENSNNAG00000002152	ENSNNAG00000002131	ENSNNAG00000002105	ENSNNAG00000002041	ENSNNAG00000001969	SLC19A1 (ENSNNAG00000001928)	COL18A1 (ENSNNAG00000001829)	NUDT8 (ENSNNAG00000001793) #17	NDUFV1 (ENSNNAG00000001774) #19	ENSNNAG00000001717	ENSNNAG00000001651	CDK2AP2 (ENSNNAG00000001637) #22	PITPNM1 (ENSNNAG00000001616) #23	CBLIF (ENSNNAG00000001575)	MRPL16 (ENSNNAG00000001551)	STX3 (ENSNNAG00000001524)	ENSNNAG00000001502	OR10V1 (ENSNNAG00000001491)	PATL1 (ENSNNAG00000001472)	OSBP (ENSNNAG00000001447)	ENSNNAG00000001431	MPEG1 (ENSNNAG00000001420)	DTX4 (ENSNNAG00000001406)	ENSNNAG00000001395	ENSNNAG00000001384	CNTF (ENSNNAG00000001376)	ZFP91 (ENSNNAG00000001355)
Lizard	MODERN SPECIES		ENSACAG00000036030	ENSACAG00000000790	ENSACAG00000039319	ENSACAG00000026696	ENSACAG00000037968	ENSACAG00000042531	ENSACAG00000041108	ENSACAG00000025725	ENSACAG00000010477	ENSACAG00000010273	ENSACAG00000028442	NDUFV1 (ENSACAG00000010217) #19	ENSACAG00000003940	CABP2 (ENSACAG00000010150) #21	ENSACAG00000042158	CDK2AP2 (ENSACAG00000010133) #22	PITPNM1 (ENSACAG00000010021) #23	ENSACAG00000009990	TCN1 (ENSACAG00000009976)	CBLIF (ENSACAG00000009964)	MRPL16 (ENSACAG00000009952)	ENSACAG00000036689	STX3 (ENSACAG00000009876)	ENSACAG00000028609	PATL1 (ENSACAG00000006607)	OSBP (ENSACAG00000006658)	ENSACAG00000038541	MPEG1 (ENSACAG00000006729)	DTX4 (ENSACAG00000006730)	ENSACAG00000044191	ENSACAG00000006795
tuatara	MODERN SPECIES	1101												ENSSPUG00000001652	NDUFV1 (ENSSPUG00000001663) #19	ENSSPUG00000001733	ENSSPUG00000001743	CDK2AP2 (ENSSPUG00000001762) #22	PITPNM1 (ENSSPUG00000001775) #23	AIP (ENSSPUG00000001810) #24	MTCH2 (ENSSPUG00000001817)	AGBL2 (ENSSPUG00000001827)	FNBP4 (ENSSPUG00000001869)	NUP160 (ENSSPUG00000001896)
Archelosauria	ANCESTRAL SPECIES	64												ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000000020.b	ENSGT00940000154885.C	ENSGT00940000160201	ENSGT00390000003450	ENSGT00390000000972	ENSGT00940000156521.b	ENSGT00940000158908	ENSGT00390000011163	ENSGT00940000160477	ENSGT00940000157848	ENSGT00950000183128.C	ENSGT00530000064011	ENSGT00530000063359.B #12
Archosauria	ANCESTRAL SPECIES	100													ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24
Aves	ANCESTRAL SPECIES	42	ENSGT00530000063359.B #12	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163	ENSGT00940000158908	ENSGT00940000156521.b	ENSGT00390000000972	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24
Neognathae	ANCESTRAL SPECIES	30	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163	ENSGT00940000158908	ENSGT00940000156521.b	ENSGT00390000000972	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000163889 #17	ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00910000144307	ENSGT00950000183145.A.a	ENSGT00940000154852.b	ENSGT00940000159520.h.r	ENSGT00730000112245	ENSGT00940000165047	ENSGT00390000010778	ENSGT00390000017361	ENSGT00940000160990	ENSGT00940000153899.a.b	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101
Neognathae_b	ANCESTRAL SPECIES	14	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163	ENSGT00940000158908	ENSGT00940000156521.b	ENSGT00390000000972	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000163889 #17	ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00910000144307	ENSGT00950000183145.A.a	ENSGT00940000154852.b	ENSGT00940000159520.h.r	ENSGT00730000112245	ENSGT00940000165047	ENSGT00390000010778	ENSGT00390000017361	ENSGT00940000160990	ENSGT00940000153899.a.b	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101
Passeriformes	ANCESTRAL SPECIES	39	ENSGT00530000063359.B #12	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163	ENSGT00940000158908	ENSGT00940000156521.b	ENSGT00390000000972	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000163889 #17	ENSGT00390000010641 #19	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00950000183145.A.a	ENSGT00940000159520.h.r	ENSGT00730000112245	ENSGT00940000165047	ENSGT00390000010778	ENSGT00390000017361	ENSGT00940000160990	ENSGT00940000153899.a.b	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000164955
Great tit	MODERN SPECIES	25	ENSPMJG00000003832 #14	ENSPMJG00000003840 #14	MAX (ENSPMJG00000003863)	FNTB (ENSPMJG00000003875)	RAB15 (ENSPMJG00000003880)	GPX2 (ENSPMJG00000003949)	CHURC1 (ENSPMJG00000003984)	SPTB (ENSPMJG00000003988)	PLEKHG3 (ENSPMJG00000003998)	NUP160 (ENSPMJG00000004017)	FNBP4 (ENSPMJG00000004890)	AGBL2 (ENSPMJG00000004893)	MTCH2 (ENSPMJG00000004897)	NDUFV1 (ENSPMJG00000004898) #19	CABP2 (ENSPMJG00000004899) #21	CDK2AP2 (ENSPMJG00000004904) #22	PITPNM1 (ENSPMJG00000004907) #23	AIP (ENSPMJG00000005094) #24	ENSPMJG00000005096	ENSPMJG00000005097	ENSPMJG00000005099	ENSPMJG00000005101	TALDO1 (ENSPMJG00000005127)	EIF4G2 (ENSPMJG00000005130)	CTR9 (ENSPMJG00000005691)	ENSPMJG00000006038	IRAG1 (ENSPMJG00000006040)	LYVE1 (ENSPMJG00000006161)	RNF141 (ENSPMJG00000006162)	AMPD3 (ENSPMJG00000006166)	ADM (ENSPMJG00000006168)
Passeriformes_d	ANCESTRAL SPECIES	24	ENSGT00940000155904.q.b.c #14	ENSGT00530000063359.B #12	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163	ENSGT00940000156521.b	ENSGT00390000000972	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00390000010641 #19	ENSGT00940000159796 #21	ENSGT00940000164685	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00950000183145.A.a.g	ENSGT00940000159520.h.r	ENSGT00730000112245	ENSGT00390000010778	ENSGT00390000017361	ENSGT00940000160990	ENSGT00940000153899.a.b	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000164955	ENSGT00390000008048	ENSGT00940000157122
Flycatcher	MODERN SPECIES	24	NDUFS8 (ENSFALG00000025751) #10	ENSFALG00000001178 #14	UNC93B1 (ENSFALG00000001185) #12	MAX (ENSFALG00000026119)	FNTB (ENSFALG00000001199)	RAB15 (ENSFALG00000001205)	GPX2 (ENSFALG00000001208)	CHURC1 (ENSFALG00000024378)	PLEKHG3 (ENSFALG00000001267)	NUP160 (ENSFALG00000001275)	FNBP4 (ENSFALG00000001280)	AGBL2 (ENSFALG00000001274)	MTCH2 (ENSFALG00000001294)	NDUFV1 (ENSFALG00000001321) #19	ENSFALG00000001331	CDK2AP2 (ENSFALG00000024493) #22	PITPNM1 (ENSFALG00000001333) #23	AIP (ENSFALG00000001339) #24	ENSFALG00000023299	ENSFALG00000010841	ENSFALG00000015296	ENSFALG00000027704	TALDO1 (ENSFALG00000026408)	EPS8L2 (ENSFALG00000010891)	TMEM80 (ENSFALG00000010901)	ENSFALG00000022914	DRD4 (ENSFALG00000010941)	ENSFALG00000010954	ENSFALG00000010961	MPEG1 (ENSFALG00000010968)	DTX4 (ENSFALG00000010976)
Passeriformes_g	ANCESTRAL SPECIES																	ENSGT00940000160334 #22
Passeroidea	ANCESTRAL SPECIES																	ENSGT00940000160334 #22
Zebra finch	MODERN SPECIES	27	TCIRG1 (ENSTGUG00000007403) #9	NDUFS8 (ENSTGUG00000007436) #10	ENSTGUG00000026950 #14	ENSTGUG00000007446 #14	MAX (ENSTGUG00000023132)	FNTB (ENSTGUG00000007483)	RAB15 (ENSTGUG00000020981)	CHURC1 (ENSTGUG00000026206)	PLEKHG3 (ENSTGUG00000007578)	NUP160 (ENSTGUG00000007581)	FNBP4 (ENSTGUG00000007629)	AGBL2 (ENSTGUG00000007643)	MTCH2 (ENSTGUG00000007652)	NUDT8 (ENSTGUG00000007694) #17	ENSTGUG00000007725	CDK2AP2 (ENSTGUG00000022260) #22	AIP (ENSTGUG00000007764) #24	ENSTGUG00000007776	ENSTGUG00000007792	ENSTGUG00000007810	ENSTGUG00000016693	ENSTGUG00000020021	ENSTGUG00000007815	TALDO1 (ENSTGUG00000007821)	EIF4G2 (ENSTGUG00000007840)	CTR9 (ENSTGUG00000007907)	IRAG1 (ENSTGUG00000007955)	LYVE1 (ENSTGUG00000007979)	RNF141 (ENSTGUG00000020047)	AMPD3 (ENSTGUG00000008001)	ENSTGUG00000022953
Neognathae_c	ANCESTRAL SPECIES	17	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163	ENSGT00940000158908	ENSGT00940000156521.b	ENSGT00390000000972	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000163889 #17	ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000164685	ENSGT00940000160334 #22	ENSGT00940000161522.b #23	ENSGT00390000001289.a #24	ENSGT00940000159520.h.r	ENSGT00730000112245	ENSGT00940000165047	ENSGT00390000017361	ENSGT00940000160990	ENSGT00940000153899.a.b	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000158912	ENSGT00940000156528	ENSGT00940000159326	ENSGT00390000005766
Golden eagle	MODERN SPECIES	7	ENSACCG00020013027	ENSACCG00020013041	ENSACCG00020013058	ENSACCG00020013089 ##16	TCIRG1 (ENSACCG00020013120) #9	NDUFS8 (ENSACCG00020013144) #10	ENSACCG00020013215 #14	ENSACCG00020013243	NUP160 (ENSACCG00020013268)	FNBP4 (ENSACCG00020013300)	AGBL2 (ENSACCG00020013340)	MTCH2 (ENSACCG00020013377)	ENSACCG00020013401	NDUFV1 (ENSACCG00020013429) #19	ENSACCG00020013451	CDK2AP2 (ENSACCG00020013468) #22	ENSACCG00020013526 #23	ENSACCG00020013507 #23	AIP (ENSACCG00020013542) #24	ENSACCG00020013566	ENSACCG00020013587	ENSACCG00020013619	TALDO1 (ENSACCG00020013649)	EPS8L2 (ENSACCG00020013765)	TMEM80 (ENSACCG00020013821)	DEAF1 (ENSACCG00020013848)	DRD4 (ENSACCG00020013869)	ENSACCG00020013885	BUB1B (ENSACCG00020013915)	PAK6 (ENSACCG00020013954)	PLCB2 (ENSACCG00020014048)
Kakapo	MODERN SPECIES	21	UNC93B1 (ENSSHBG00005018233) #12	MAX (ENSSHBG00005018231)	FNTB (ENSSHBG00005018230)	RAB15 (ENSSHBG00005018227)	GPX2 (ENSSHBG00005018223)	CHURC1 (ENSSHBG00005018217)	SPTB (ENSSHBG00005008745)	ENSSHBG00005008435	NUP160 (ENSSHBG00005008355)	FNBP4 (ENSSHBG00005008293)	AGBL2 (ENSSHBG00005008277)	MTCH2 (ENSSHBG00005008267)	NUDT8 (ENSSHBG00005008258) #17	NDUFV1 (ENSSHBG00005008244) #19	ENSSHBG00005008227	CDK2AP2 (ENSSHBG00005008218) #22	PITPNM1 (ENSSHBG00005008196) #23	AIP (ENSSHBG00005000129) #24	ENSSHBG00005004143	ENSSHBG00005004121	ENSSHBG00005004112	ENSSHBG00005004098	ENSSHBG00005004084	ENSSHBG00005004065	TALDO1 (ENSSHBG00005004056)	EPS8L2 (ENSSHBG00005003789)	TMEM80 (ENSSHBG00005003689)	DEAF1 (ENSSHBG00005003577)	DRD4 (ENSSHBG00005003546)	ENSSHBG00005003536	BUB1B (ENSSHBG00005003488)
Galloanserae	ANCESTRAL SPECIES	30	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163	ENSGT00940000158908	ENSGT00940000156521.b	ENSGT00390000000972	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000163889 #17	ENSGT00390000010641 #19	ENSGT01100000264273	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00940000159520.h.r	ENSGT00730000112245	ENSGT00940000165047	ENSGT00390000010778	ENSGT00390000017361	ENSGT00940000160990	ENSGT00940000153899.a.b	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000164955	ENSGT00940000158912	ENSGT00940000156528
Phasianidae	ANCESTRAL SPECIES	26	ENSGT00530000063359.B #12	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163	ENSGT00940000158908	ENSGT00940000156521.b	ENSGT00390000000972	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000163889 #17	ENSGT00390000010641 #19	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00940000159520.h.r	ENSGT00730000112245	ENSGT00940000165047	ENSGT00390000017361	ENSGT00940000160990	ENSGT00940000153899.a.b	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000164955	ENSGT00940000158912	ENSGT00940000156528	ENSGT00940000159326
Phasianidae_b	ANCESTRAL SPECIES	34	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163	ENSGT00940000158908	ENSGT00940000156521.b	ENSGT00390000000972	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000163889 #17	ENSGT00390000010641 #19	ENSGT01100000264273	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00940000159520.h.r	ENSGT00730000112245	ENSGT00940000165047	ENSGT00390000017361	ENSGT00940000160990	ENSGT00940000153899.a.b	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000164955	ENSGT00940000158912	ENSGT00940000156528	ENSGT00940000159326
Chicken	MODERN SPECIES	34	MAX (ENSGALG00010021506)	FNTB (ENSGALG00010021519)	RAB15 (ENSGALG00010021531)	GPX2 (ENSGALG00010021537)	CHURC1 (ENSGALG00010021558)	SPTB (ENSGALG00010021604)	PLEKHG3 (ENSGALG00010021640)	NUP160 (ENSGALG00010024170)	FNBP4 (ENSGALG00010021695)	AGBL2 (ENSGALG00010021737)	MTCH2 (ENSGALG00010021751)	NUDT8 (ENSGALG00010021835) #17	NDUFV1 (ENSGALG00010021892) #19	ENSGALG00010021851	CABP2 (ENSGALG00010021938) #21	CDK2AP2 (ENSGALG00010021947) #22	PITPNM1 (ENSGALG00010021953) #23	AIP (ENSGALG00010022042) #24	ENSGALG00010022050	NLRP3 (ENSGALG00010022058)	CEND1 (ENSGALG00010022130)	PDDC1 (ENSGALG00010022137)	TALDO1 (ENSGALG00010022148)	EPS8L2 (ENSGALG00010022157)	TMEM80 (ENSGALG00010022227)	DEAF1 (ENSGALG00010022239)	DRD4 (ENSGALG00010022249)	SCT (ENSGALG00010022996)	CDHR5 (ENSGALG00010023008)	BUB1B (ENSGALG00010023017)	PAK6 (ENSGALG00010023257)
Japanese quail	MODERN SPECIES	23	ENSCJPG00005013231	TCIRG1 (ENSCJPG00005013233) #9	ENSCJPG00005013234	ENSCJPG00005013238 #14	ENSCJPG00005013244 #14	UNC93B1 (ENSCJPG00005013270) #12	MAX (ENSCJPG00005013271)	FNTB (ENSCJPG00005013272)	ENSCJPG00005013308	RAB15 (ENSCJPG00005013309)	GPX2 (ENSCJPG00005013310)	NUP160 (ENSCJPG00005013463)	ENSCJPG00005013471	NDUFV1 (ENSCJPG00005013473) #19	CABP2 (ENSCJPG00005013508) #21	CDK2AP2 (ENSCJPG00005013509) #22	AIP (ENSCJPG00005013517) #24	ENSCJPG00005013518	ENSCJPG00005013519	ENSCJPG00005013520	ENSCJPG00005013521	TALDO1 (ENSCJPG00005013524)	EPS8L2 (ENSCJPG00005013525)	TMEM80 (ENSCJPG00005013526)	DEAF1 (ENSCJPG00005013527)	DRD4 (ENSCJPG00005013528)	ENSCJPG00005013529	BUB1B (ENSCJPG00005013530)	PAK6 (ENSCJPG00005013531)	PLCB2 (ENSCJPG00005013534)	INAFM2 (ENSCJPG00005013535)
Cryptodira	ANCESTRAL SPECIES	71												ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00950000183133.f.g.a.b	ENSGT00390000000020.b	ENSGT00940000154885.C	ENSGT00940000160201	ENSGT00390000003450	ENSGT00390000000972	ENSGT00940000156521.b	ENSGT00940000158908	ENSGT00390000011163	ENSGT00940000160477	ENSGT00940000157848	ENSGT00950000183128.C	ENSGT00530000064011
Testudinoidea	ANCESTRAL SPECIES	33									ENSGT00990000205528.c	ENSGT01100000263552.g.b.b.b.c.a.b.b	ENSGT01100000263491.a.b.a.a.a.a.a.a.a.a.a	ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00950000183133.f.g.a.b	ENSGT00390000000020.b	ENSGT00940000154885.C	ENSGT00940000160201	ENSGT00390000003450	ENSGT00390000000972	ENSGT00940000156521.b	ENSGT00940000158908	ENSGT00390000011163	ENSGT00940000160477	ENSGT00940000157848	ENSGT00950000183128.C	ENSGT00530000064011
Emydidae	ANCESTRAL SPECIES	25							ENSGT00950000185037.a.a.a.a.a	ENSGT00990000205528.c	ENSGT01100000263552.g.b.b.b.c.a.b.b	ENSGT01100000263491.a.b.a.a.a.a.a.a.a.a.a	ENSGT00940000154715.b.k.b.a.b.b.b.a.a.a.a.b	ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00940000154885.C	ENSGT00390000000020.b	ENSGT00940000160201	ENSGT00390000003450	ENSGT00390000000972	ENSGT00940000156521.b	ENSGT00940000158908	ENSGT00390000011163	ENSGT00940000160477	ENSGT00940000157848	ENSGT00950000183128.C	ENSGT00530000064011	ENSGT00530000063359.B #12
Three-toed box turtle	MODERN SPECIES	404	ENSTMTG00000010058	ENSTMTG00000010045	ENSTMTG00000010029	ENSTMTG00000010011	ENSTMTG00000009993	ENSTMTG00000009966	ENSTMTG00000009951	ENSTMTG00000009942	ENSTMTG00000009935	ENSTMTG00000009928	ENSTMTG00000009915	ENSTMTG00000009905	NDUFV1 (ENSTMTG00000009882) #19	ENSTMTG00000009865	ENSTMTG00000009840	CDK2AP2 (ENSTMTG00000009820) #22	PITPNM1 (ENSTMTG00000009768) #23	AIP (ENSTMTG00000009747) #24	ENSTMTG00000009733	MTCH2 (ENSTMTG00000009709)	AGBL2 (ENSTMTG00000009638)	FNBP4 (ENSTMTG00000009467)	NUP160 (ENSTMTG00000009394)	SPTB (ENSTMTG00000008729)	CHURC1 (ENSTMTG00000008613)	FNTB (ENSTMTG00000008588)	MAX (ENSTMTG00000008579)	ENSTMTG00000008565 #12	MPEG1 (ENSTMTG00000008547)	DTX4 (ENSTMTG00000008534)	ENSTMTG00000008529
painted turtle	MODERN SPECIES	1150			ENSCPBG00000015266	ENSCPBG00000015268	ENSCPBG00000015272	ENSCPBG00000015274	ENSCPBG00000015276	ENSCPBG00000015278	ENSCPBG00000015279	ENSCPBG00000015281	ENSCPBG00000015283	ENSCPBG00000015285	NDUFV1 (ENSCPBG00000015286) #19	GSTP1 (ENSCPBG00000015287) #20	CABP2 (ENSCPBG00000015291) #21	CDK2AP2 (ENSCPBG00000015408) #22	PITPNM1 (ENSCPBG00000015423) #23	AIP (ENSCPBG00000015740) #24
Testudinidae	ANCESTRAL SPECIES	42													ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000160334 #22	ENSGT00940000161522.c #23	ENSGT00390000001289.a #24	ENSGT00950000183133.f.g.a.b.b	ENSGT00940000154885.C	ENSGT00390000000020.b	ENSGT00940000160201	ENSGT00390000003450	ENSGT00390000000972	ENSGT00940000156521.b	ENSGT00940000158908	ENSGT00390000011163	ENSGT00940000160477	ENSGT00940000157848	ENSGT00950000183128.C	ENSGT00530000064011
Goode s thornscrub tortoise	MODERN SPECIES	18	ENSGEVG00005000991	ENSGEVG00005000912	ENSGEVG00005000891	ENSGEVG00005000878	ENSGEVG00005000774	ENSGEVG00005000667	ENSGEVG00005000628	ENSGEVG00005000583	ENSGEVG00005000552	ENSGEVG00005000542	ENSGEVG00005000528	ENSGEVG00005000514	NDUFV1 (ENSGEVG00005000449) #19	GSTP1 (ENSGEVG00005000393) #20	ENSGEVG00005000368	CDK2AP2 (ENSGEVG00005000341) #22	PITPNM1 (ENSGEVG00005000305) #23	AIP (ENSGEVG00005000269) #24	ENSGEVG00005000228	ENSGEVG00005000179	ENSGEVG00005000141	MTCH2 (ENSGEVG00005000116)	AGBL2 (ENSGEVG00005018370)	FNBP4 (ENSGEVG00005018174)	NUP160 (ENSGEVG00005017393)	ENSGEVG00005017129	ENSGEVG00005017084	SPTB (ENSGEVG00005011161)	CHURC1 (ENSGEVG00005010152)	GPX2 (ENSGEVG00005010103)	RAB15 (ENSGEVG00005010078)
Abingdon island giant tortoise	MODERN SPECIES	442		ENSCABG00000000961	ENSCABG00000000959	ENSCABG00000000954	ENSCABG00000000949	ENSCABG00000000947	ENSCABG00000000944	ENSCABG00000000943	ENSCABG00000000940	ENSCABG00000000937	ENSCABG00000000930	ENSCABG00000000925	NDUFV1 (ENSCABG00000000920) #19	GSTP1 (ENSCABG00000000917) #20	ENSCABG00000000909	CDK2AP2 (ENSCABG00000000908) #22	ENSCABG00000000849 #23	ENSCABG00000000834 #23	AIP (ENSCABG00000000827) #24	ENSCABG00000000814	MTCH2 (ENSCABG00000000808)	ENSCABG00000000804	AGBL2 (ENSCABG00000000796)	FNBP4 (ENSCABG00000000770)	NUP160 (ENSCABG00000000126)	ENSCABG00000000082	ENSCABG00000000079	SPTB (ENSCABG00000000067)	CHURC1 (ENSCABG00000000026)	GPX2 (ENSCABG00000000008)	RAB15 (ENSCABG00000020617)
Chinese turtle	MODERN SPECIES	114	ENSPSIG00000000577	ZDHHC5 (ENSPSIG00000005291)	MED19 (ENSPSIG00000005282)	TMX2 (ENSPSIG00000005258)	ENSPSIG00000005180	ENSPSIG00000005146	ENSPSIG00000000562	CTNND1 (ENSPSIG00000017242)	ENSPSIG00000016923	ENSPSIG00000015876	ENSPSIG00000015829	ENSPSIG00000015777	ENSPSIG00000015678	GSTP1 (ENSPSIG00000015623) #20	ENSPSIG00000015508	CDK2AP2 (ENSPSIG00000015488) #22	NDUFV1 (ENSPSIG00000014802) #19	AIP (ENSPSIG00000014384) #24	ENSPSIG00000014375	AGBL2 (ENSPSIG00000013694)	FNBP4 (ENSPSIG00000013410)	NUP160 (ENSPSIG00000010768)	ENSPSIG00000010568	ENSPSIG00000010375	CHURC1 (ENSPSIG00000010365)	RAB15 (ENSPSIG00000010029)	FNTB (ENSPSIG00000009679)	MAX (ENSPSIG00000009674)	ENSPSIG00000009622 #12
Anura	ANCESTRAL SPECIES	411																ENSGT00940000160334 #22	ENSGT01100000263492.b.b.b.a.b.a	ENSGT00390000001289.a #24	ENSGT00940000161468 #26
Leishan spiny toad	MODERN SPECIES	9	ENSLLEG00000016713	CLDND1 (ENSLLEG00000016880)	ENSLLEG00000016933	ENSLLEG00000016956	RNF20 (ENSLLEG00000017070)	ENSLLEG00000017529	ENSLLEG00000017585	ENSLLEG00000017609	ENSLLEG00000017895	ENSLLEG00000017925	ENSLLEG00000017989	ENSLLEG00000018091	ENSLLEG00000018416	TSPAN14 (ENSLLEG00000018497)	ENSLLEG00000018589	CDK2AP2 (ENSLLEG00000018798) #22	AIP (ENSLLEG00000018894) #24	CABP4 (ENSLLEG00000019011) #26	ENSLLEG00000019077	ENSLLEG00000019101	ENSLLEG00000019117	ENSLLEG00000019150	CLCF1 (ENSLLEG00000019168) #35	ENSLLEG00000019198	ENSLLEG00000019219	ENSLLEG00000019237	ENSLLEG00000019254	ENSLLEG00000019297	ENSLLEG00000019311	NDUFS8 (ENSLLEG00000019349) #10	ENSLLEG00000019565
Frog	MODERN SPECIES	7	ccdc86 (ENSXETG00000037483)	ENSXETG00000043167	capg (ENSXETG00000023211)	ENSXETG00000043532	ENSXETG00000046536	ENSXETG00000044295	ENSXETG00000045351	cldnd1 (ENSXETG00000027304)	ercc1 (ENSXETG00000026094)	ENSXETG00000049294	ENSXETG00000034664	cabp4 (ENSXETG00000017432) #26	ENSXETG00000044859	aip (ENSXETG00000017438) #24	ENSXETG00000048518	cdk2ap2 (ENSXETG00000040215) #22	ENSXETG00000046171	ENSXETG00000044471	ENSXETG00000040229	ENSXETG00000047852	ENSXETG00000048039	ENSXETG00000049097	ENSXETG00000040370	ENSXETG00000043251	ENSXETG00000037833	ftsj3 (ENSXETG00000006939)	ENSXETG00000006941	ENSXETG00000044699	ENSXETG00000045679	stx3 (ENSXETG00000023730)	prpf19 (ENSXETG00000011938)
Coelacanth	MODERN SPECIES	1363							SYCE2 (ENSLACG00000011225)	GCDH (ENSLACG00000010898)	ENSLACG00000009977	nfil3-6 (ENSLACG00000009125)	ENSLACG00000022216	ENSLACG00000022387	ENSLACG00000005492	ENSLACG00000005044	ENSLACG00000004911	CDK2AP2 (ENSLACG00000004589) #22	PITPNM1 (ENSLACG00000003488) #23	ENSLACG00000000656
Actinopterygii	ANCESTRAL SPECIES	518														ENSGT00390000010641 #19	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT01100000263492.b.b.b.a.b.a.a.b	ENSGT00390000001289.a #24	ENSGT00390000011766 #25
Neopterygii	ANCESTRAL SPECIES	502																ENSGT00940000160334 #22	ENSGT01100000263492.b.b.b.a.b.a.a.b	ENSGT00390000001289.a #24	ENSGT00390000011766 #25
Osteoglossocephalai	ANCESTRAL SPECIES	111							ENSGT00390000001189.b.j #15	ENSGT00390000002596.b	ENSGT00390000017281	ENSGT01000000214857	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00540000073610.B	ENSGT01070000253822.D.b	ENSGT00940000160334 #22	ENSGT01100000263492.b.b.b.a.b.a.a.b	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000157146.a.b	ENSGT00390000012030.b.b	ENSGT00940000158380.b	ENSGT00950000183079.A.b.c.a.a	ENSGT00950000183012.B.b	ENSGT00940000155777.b	ENSGT00940000163551	ENSGT00390000006641
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	114	ENSGT00940000180362	ENSGT00940000155062.a #30	ENSGT01050000244806.a.a	ENSGT00520000055649.a	ENSGT00940000156164	ENSGT00730000111690.B	ENSGT00980000199739.a	ENSGT01030000234601	ENSGT00390000001189.b.i.i.a #15	ENSGT00390000002596.b	ENSGT00390000017281	ENSGT01000000214857	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00940000160334.m #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00440000033329.a.a.b.w	ENSGT00950000183061.a.a.a.a.a.a.b.e	ENSGT00940000157146.a.b	ENSGT00390000012030.b.b	ENSGT00940000158380.b	ENSGT00950000183079.A.b.c.a.a	ENSGT00940000153716.B.d	ENSGT00950000183012.B.b	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000164070.a
P. kingsleyae	MODERN SPECIES	259																cdk2ap2 (ENSPKIG00000024810) #22	aip (ENSPKIG00000024802) #24	tmem134 (ENSPKIG00000024793) #25	serping1 (ENSPKIG00000024786)	doc2d (ENSPKIG00000024775)	ENSPKIG00000024764	LONRF1 (ENSPKIG00000024749)	DLC1 (ENSPKIG00000024704)	ENSPKIG00000024676	SGCZ (ENSPKIG00000024664)	tusc3 (ENSPKIG00000024639)	fgf20a (ENSPKIG00000024625)	MICU3 (ENSPKIG00000024566)	zdhhc2 (ENSPKIG00000024505)	vps37a (ENSPKIG00000024474)	mtmr7b (ENSPKIG00000024434)
Asian bonytongue	MODERN SPECIES	7	ENSSFOG00015009654	patl1 (ENSSFOG00015009614)	osbp (ENSSFOG00015009541)	ENSSFOG00015009499	ENSSFOG00015028596	ENSSFOG00015009467	ACY3 (ENSSFOG00015032855) #15	cldnd1b (ENSSFOG00015009451)	ENSSFOG00015009402	ENSSFOG00015027188	ENSSFOG00015026341	ENSSFOG00015016990	ENSSFOG00015032317	ENSSFOG00015000965	cntf (ENSSFOG00015000941)	cdk2ap2 (ENSSFOG00015025335) #22	aip (ENSSFOG00015000849) #24	tmem134 (ENSSFOG00015000819) #25	serping1 (ENSSFOG00015000811)	doc2d (ENSSFOG00015000797)	CABP2 (ENSSFOG00015000774) #21	LONRF1 (ENSSFOG00015000736)	DLC1 (ENSSFOG00015000648)	SGCZ (ENSSFOG00015000598)	tusc3 (ENSSFOG00015000583)	fgf20a (ENSSFOG00015000569)	MICU3 (ENSSFOG00015000511)	zdhhc2 (ENSSFOG00015000453)	ENSSFOG00015009913	vps37a (ENSSFOG00015000176)	mtmr7b (ENSSFOG00015000077)
Osteoglossiformes	ANCESTRAL SPECIES	312													ENSGT00940000156393.b	ENSGT00540000073610.B	ENSGT01070000253822.D.b	ENSGT00940000160334.n #22	ENSGT00940000159796.a.b #21	ENSGT00440000033329.a.a.b.x	ENSGT00950000183061.a.a.a.a.a.a.b.f	ENSGT00940000157146.a.a	ENSGT00940000158380.a	ENSGT00940000153716.B.c	ENSGT00390000000080.a.a	ENSGT00940000168334	ENSGT01060000249126	ENSGT00390000017153.a	ENSGT00950000183026.A.a.a.a	ENSGT00940000157733.a.a	ENSGT00940000157278.t
P. kingsleyae	MODERN SPECIES	142													ENSPKIG00000005785	ENSPKIG00000005821	ENSPKIG00000005844	cdk2ap2 (ENSPKIG00000005894) #22	ENSPKIG00000005910 #21	LONRF1 (ENSPKIG00000005938)	DLC1 (ENSPKIG00000005988)	SGCZ (ENSPKIG00000006035)	fgf20b (ENSPKIG00000006061)	zdhhc2 (ENSPKIG00000006088)	cnot7 (ENSPKIG00000006165)	slc7a2 (ENSPKIG00000006243)	pdgfrl (ENSPKIG00000006299)	mtus1a (ENSPKIG00000006318)	ENSPKIG00000006345	GALNTL6 (ENSPKIG00000006370)	GALNT7 (ENSPKIG00000006430)	HAND2 (ENSPKIG00000006490)	gpm6aa (ENSPKIG00000006511)
Asian bonytongue	MODERN SPECIES	20	cldnd1a (ENSSFOG00015012670)	ACY3 (ENSSFOG00015012691) #15	ENSSFOG00015025322	coro1b (ENSSFOG00015012799) #28	DTX4 (ENSSFOG00015031699)	msantd1 (ENSSFOG00015012869)	ENSSFOG00015012881	HGFAC (ENSSFOG00015012904)	ADRA2C (ENSSFOG00015012916)	ENSSFOG00015012926	ENSSFOG00015012936	ENSSFOG00015012941	ENSSFOG00015029153	ENSSFOG00015012971	ENSSFOG00015012978	cdk2ap2 (ENSSFOG00015012992) #22	ENSSFOG00015013021 #21	SGCZ (ENSSFOG00015013048)	fgf20b (ENSSFOG00015013086)	zdhhc2 (ENSSFOG00015013101)	cnot7 (ENSSFOG00015013130)	slc7a2 (ENSSFOG00015013179)	ENSSFOG00015013219	pdgfrl (ENSSFOG00015013223)	mtus1a (ENSSFOG00015013238)	ENSSFOG00015013253	ENSSFOG00015027547	cyp4v2b (ENSSFOG00015013275)	panx2 (ENSSFOG00015013318)	ENSSFOG00015029846	trabd (ENSSFOG00015028326)
Clupeocephala	ANCESTRAL SPECIES	118				ENSGT00390000011517.a.a.c.a.b	ENSGT01030000234601	ENSGT00940000153745.b.e.a	ENSGT00390000001189.b.j #15	ENSGT00390000002596.b	ENSGT00950000182942.a.a	ENSGT00390000017281	ENSGT01000000214857	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00940000160334 #22	ENSGT01100000263492.b.b.b.a.b.a.a.b.b	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157146.a.b	ENSGT00390000012030.b.b	ENSGT00940000158380.b	ENSGT00950000183079.A.b.c.a.a	ENSGT00950000183012.B.b	ENSGT00940000155777.b
Otomorpha	ANCESTRAL SPECIES	326	ENSGT00940000156806	ENSGT00940000157174.c	ENSGT00940000154658.b.i.b	ENSGT00390000011517.a.a.c.a.b.a	ENSGT01030000234601	ENSGT00940000153745.b.e.a	ENSGT00390000001189.b.j #15	ENSGT00390000002596.b	ENSGT00950000182942.a.a	ENSGT00390000017281	ENSGT01000000214857	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00940000160334 #22	ENSGT00390000001289.a #24
Clupeiformes	ANCESTRAL SPECIES	26	ENSGT00730000111690.B.g	ENSGT00520000055649.a	ENSGT00940000156164	ENSGT00730000111690.B.f.b.b	ENSGT00390000002596.b	ENSGT00390000001189.b.j #15	ENSGT00940000153745.b.e.a	ENSGT01030000234601.q.a	ENSGT00940000173396	ENSGT00940000159063.f	ENSGT00950000182942.a.a	ENSGT00390000017281	ENSGT01000000214857	ENSGT00940000156393.a.b	ENSGT00540000073610.A	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00530000063548.B.e	ENSGT00390000006641	ENSGT00950000183026.A.a.a.b	ENSGT00940000177791	ENSGT00940000155777.b	ENSGT00950000183012.B.b	ENSGT00940000159025	ENSGT00940000166376	ENSGT00940000156633.d.a	ENSGT00940000163989.a.b	ENSGT00940000165755	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT01030000234528.A.a.a
Denticle herring	MODERN SPECIES	14	RPS6KB2 (ENSDCDG00000027065) #30	patl1 (ENSDCDG00000027526)	osbp (ENSDCDG00000027532)	cldnd1b (ENSDCDG00000027546)	acy3.2 (ENSDCDG00000027548) #15	tacr3l (ENSDCDG00000027552)	ENSDCDG00000027556	ENSDCDG00000027557	glb1 (ENSDCDG00000027570)	ENSDCDG00000028684	ENSDCDG00000028687	ENSDCDG00000028689	ENSDCDG00000028701	cntf (ENSDCDG00000028705)	ENSDCDG00000028714	cdk2ap2 (ENSDCDG00000028719) #22	aip (ENSDCDG00000028722) #24	asah1b (ENSDCDG00000028732)	pcm1 (ENSDCDG00000028924)	ENSDCDG00000030029	mtmr7b (ENSDCDG00000030043)	vps37a (ENSDCDG00000030232)	pkd2 (ENSDCDG00000030259)	abcg2d (ENSDCDG00000030479)	ENSDCDG00000032055	herc56.4 (ENSDCDG00000032058)	herc3 (ENSDCDG00000032074)	FAM13A (ENSDCDG00000032130)	ENSDCDG00000032393	elmod2 (ENSDCDG00000032395)	ucp1 (ENSDCDG00000000180)
Atlantic herring	MODERN SPECIES	14	ENSCHAG00000015639	ENSCHAG00000015606	ENSCHAG00000015589	ENSCHAG00000015553	cldnd1b (ENSCHAG00000015544)	acy3.2 (ENSCHAG00000015523) #15	tacr3l (ENSCHAG00000015499)	ENSCHAG00000015469	ENSCHAG00000015448	ENSCHAG00000015436	glb1 (ENSCHAG00000013252)	ccdc86 (ENSCHAG00000013148)	ENSCHAG00000013144	ENSCHAG00000013103	ENSCHAG00000013085	cdk2ap2 (ENSCHAG00000013071) #22	aip (ENSCHAG00000013063) #24	asah1b (ENSCHAG00000011282)	ENSCHAG00000011170	pcm1 (ENSCHAG00000010999)	ENSCHAG00000010955	ENSCHAG00000010909	ENSCHAG00000010905	mtmr7b (ENSCHAG00000010713)	vps37a (ENSCHAG00000010503)	pkd2 (ENSCHAG00000009367)	abcg2d (ENSCHAG00000007523)	ppm1kb (ENSCHAG00000007451)	ENSCHAG00000007430	ENSCHAG00000007343	herc3 (ENSCHAG00000007052)
Otophysi	ANCESTRAL SPECIES	79												ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00940000158194	ENSGT00520000055589.d.a.b	ENSGT00390000011766 #25	ENSGT00940000159063.f	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a.a.a	ENSGT01030000234566.e.b.a.a.b	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000165059.A	ENSGT00940000158602	ENSGT00390000006915.d.i	ENSGT01080000257376.a.b.a.a	ENSGT00390000006915.d.j.a
Characiphysae	ANCESTRAL SPECIES	9	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887	ENSGT00390000008798.c	ENSGT00940000155140.t	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00940000158194	ENSGT00520000055589.d.a.b	ENSGT00390000011766 #25	ENSGT00940000159063.f	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000165059.A	ENSGT00940000158602	ENSGT00390000006915.d.j.a	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873
Characiphysae_b	ANCESTRAL SPECIES	153	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00940000154706.rb.b	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887	ENSGT00390000008798.c	ENSGT00940000155140.t	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00940000158194	ENSGT00940000177470
Characoidei	ANCESTRAL SPECIES	263				ENSGT00940000160529	ENSGT00390000005708	ENSGT00950000182917.a.a.a.b	ENSGT00940000157887	ENSGT00390000008798.c	ENSGT00940000155140.t	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00940000158194	ENSGT00940000177470
Red-bellied piranha	MODERN SPECIES	808														lgi2b (ENSPNAG00000021665)	ENSPNAG00000021671	cdk2ap2 (ENSPNAG00000021692) #22	aip (ENSPNAG00000021731) #24	ENSPNAG00000021743	ing2 (ENSPNAG00000021769)
Mexicana tetra	MODERN SPECIES	310				sh3gl2a (ENSAMXG00000013995)	snapc3 (ENSAMXG00000035154)	ENSAMXG00000036632	dnajb14 (ENSAMXG00000036410)	pla2g12a (ENSAMXG00000038331)	CASP6 (ENSAMXG00000037238)	ENSAMXG00000000744	ENSAMXG00000000733	cntf (ENSAMXG00000030348)	ENSAMXG00000000718	ccdc149b (ENSAMXG00000030390)	lgi2b (ENSAMXG00000038692)	cdk2ap2 (ENSAMXG00000035551) #22	aip (ENSAMXG00000041837) #24	SOD3 (ENSAMXG00000025411)	ing2 (ENSAMXG00000000678)	ENSAMXG00000039274
Electric eel	MODERN SPECIES	31	cfap144 (ENSEEEG00000007599)	TMEM125 (ENSEEEG00000007601)	ap1m3 (ENSEEEG00000007627)	ENSEEEG00000008580	tie1 (ENSEEEG00000008596)	mpl (ENSEEEG00000008792)	orc1 (ENSEEEG00000008802)	prpf38a (ENSEEEG00000008841)	pomgnt1 (ENSEEEG00000008842)	pla2g12a (ENSEEEG00000009080)	CASP6 (ENSEEEG00000009081)	cntf (ENSEEEG00000009098)	ENSEEEG00000009099	ccdc149b (ENSEEEG00000009100)	lgi2b (ENSEEEG00000009101)	cdk2ap2 (ENSEEEG00000009109) #22	aip (ENSEEEG00000009114) #24	ENSEEEG00000009115	ing2 (ENSEEEG00000009116)	ENSEEEG00000009119
Channel catfish	MODERN SPECIES	22	DNAJB14 (ENSIPUG00000002181)	Pla2g12a (ENSIPUG00000002213)	ENSIPUG00000002225	CASP6 (ENSIPUG00000002234)	ZFP91 (ENSIPUG00000002257)	ENSIPUG00000002260	cntf (ENSIPUG00000002265)	ENSIPUG00000002271	ENSIPUG00000002279	ENSIPUG00000002287	ENSIPUG00000002292	pdcd4a (ENSIPUG00000002299)	ENSIPUG00000002324	ccdc149b (ENSIPUG00000002331)	lgi2b (ENSIPUG00000002354)	cdk2ap2 (ENSIPUG00000002396) #22	aip (ENSIPUG00000002402) #24	SOD3 (ENSIPUG00000002419)	ing2 (ENSIPUG00000002434)	stox2 (ENSIPUG00000002443)	tmem134 (ENSIPUG00000002462) #25	irf2a (ENSIPUG00000002472)	Dctd (ENSIPUG00000002486)	ENSIPUG00000002498	TENM3 (ENSIPUG00000002505)	ENSIPUG00000002575	VEGFC (ENSIPUG00000002582)	SPCS3 (ENSIPUG00000002609)	tapbp (ENSIPUG00000002618)	asb5 (ENSIPUG00000002631)	wdr17 (ENSIPUG00000002658)
Cyprinoidei	ANCESTRAL SPECIES	22	ENSGT00390000008828.fb.b	ENSGT00950000183201.b.a.b	ENSGT00390000011517.a.a.c.a.b.a.c	ENSGT00390000011517.a.a.c.a.b.a.d	ENSGT00940000154259.b.b	ENSGT00940000162502.a	ENSGT00940000157807.g.b	ENSGT01100000263483.F.a.eb	ENSGT01100000263483.E.b.a.c.a.a	ENSGT01100000263483.E.b.a.c.b.a.b	ENSGT01100000263483.E.b.a.c.b.a.a	ENSGT00940000156393.a.b.c	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00940000158194	ENSGT00520000055589.d.a.b	ENSGT00390000011766 #25	ENSGT00940000159063.f	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a.a.a	ENSGT01030000234566.e.b.a.a.b	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000165059.A	ENSGT00940000158602	ENSGT00390000006915.d.i	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	164								ENSGT01100000263483.E.b.a.c.b.a.a.a.a.a	ENSGT00940000156393.a.b.c.a	ENSGT00520000058756	ENSGT00940000156393.a.b.d	ENSGT00540000073610.A.b	ENSGT00980000198603.B	ENSGT00390000015958.c.b	ENSGT00940000157294.c.a	ENSGT00940000160334.o #22	ENSGT00390000001289.a.e #24	ENSGT00940000162224.h	ENSGT00940000158194.i.a	ENSGT00520000055589.d.a.b.a	ENSGT00390000011766.g #25	ENSGT00940000159063.f.a.b	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a.a.a.m	ENSGT01030000234566.e.b.a.a.b	ENSGT00940000156167.b.a	ENSGT00390000009223.rb	ENSGT00940000165059.A.a	ENSGT00940000158602.i	ENSGT00390000006915.d.i.a	ENSGT01080000257376.a.b.a.a
Cyprininae_a	ANCESTRAL SPECIES	157								ENSGT01100000263483.E.b.a.c.b.a.a.a.a.a	ENSGT00940000156393.a.b.c.a	ENSGT00520000058756	ENSGT00940000156393.a.b.d	ENSGT00540000073610.A.b	ENSGT00980000198603.B	ENSGT00390000015958.c.b	ENSGT00940000157294.c.a	ENSGT00940000160334.o #22	ENSGT00390000001289.a.e #24	ENSGT00940000162224.h	ENSGT00940000158194.i.a	ENSGT00520000055589.d.a.b.a	ENSGT00390000011766.g #25	ENSGT00940000159063.f.a.b	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a.a.a.m	ENSGT01030000234566.e.b.a.a.b	ENSGT00940000156167.b.a	ENSGT00390000009223.rb	ENSGT00940000165059.A.a	ENSGT00940000158602.i	ENSGT00390000006915.d.i.a	ENSGT01080000257376.a.b.a.a
Golden-line barbel	MODERN SPECIES	16	ENSSGRG00000036262	ENSSGRG00000036261	zgc:56493 (ENSSGRG00000036260)	faah2a (ENSSGRG00000036259)	TESK1 (ENSSGRG00000036258)	ENSSGRG00000036256	ENSSGRG00000036255	ENSSGRG00000036254	ENSSGRG00000036253	ENSSGRG00000036252	ENSSGRG00000036251	ENSSGRG00000036249	cntf (ENSSGRG00000036247)	ccdc149b (ENSSGRG00000036241)	lgi2b (ENSSGRG00000036237)	cdk2ap2 (ENSSGRG00000036234) #22	aip (ENSSGRG00000036230) #24	SOD3 (ENSSGRG00000036227)	ing2 (ENSSGRG00000036225)	STOX2 (ENSSGRG00000036224)	tmem134 (ENSSGRG00000036223) #25	irf2a (ENSSGRG00000036222)	dctd (ENSSGRG00000036221)	TENM3 (ENSSGRG00000033560)	ENSSGRG00000033531	vegfc (ENSSGRG00000033530)	spcs3 (ENSSGRG00000033525)	asb5b (ENSSGRG00000033524)	wdr17 (ENSSGRG00000032964)	gpm6ab (ENSSGRG00000032955)	glra3 (ENSSGRG00000032951)
Common carp reference	MODERN SPECIES	27	ENSCCRG00000069258	zgc:56493 (ENSCCRG00000076188)	faah2a (ENSCCRG00000017057)	ENSCCRG00000004413	ENSCCRG00000053249	ENSCCRG00000023488	ENSCCRG00000025732	ENSCCRG00000054934	ENSCCRG00000057879	ENSCCRG00000077428	cntf (ENSCCRG00000025703)	ENSCCRG00000067650	ccdc149b (ENSCCRG00000051986)	lgi2b (ENSCCRG00000054335)	aip (ENSCCRG00000051967) #24	cdk2ap2 (ENSCCRG00000064036) #22	ing2 (ENSCCRG00000005204)	ENSCCRG00000081924	ENSCCRG00000051974	tmem134 (ENSCCRG00000081609) #25	irf2a (ENSCCRG00000076801)	ENSCCRG00000045193	ENSCCRG00000041144	tenm3 (ENSCCRG00000059959)	vegfc (ENSCCRG00000075544)	spcs3 (ENSCCRG00000032030)	asb5b (ENSCCRG00000058956)	wdr17 (ENSCCRG00000031139)	gpm6ab (ENSCCRG00000024308)	ENSCCRG00000058509	glra3 (ENSCCRG00000049689)
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	3420																cdk2ap2 (ENSCARG00000044629) #22	aip (ENSCARG00000044636) #24	SOD3 (ENSCARG00000044649)	ing2 (ENSCARG00000044655)	ENSCARG00000044671
Goldfish	MODERN SPECIES	277						ENSCARG00000044810	TESK1 (ENSCARG00000044823)	ENSCARG00000044849	ENSCARG00000044862	ENSCARG00000044869	ENSCARG00000044891	ENSCARG00000044914	cntf (ENSCARG00000044968)	ccdc149b (ENSCARG00000045020)	lgi2b (ENSCARG00000045315)	cdk2ap2 (ENSCARG00000045363) #22	aip (ENSCARG00000045389) #24	SOD3 (ENSCARG00000045423)	ing2 (ENSCARG00000045436)	ENSCARG00000045456	irf2a (ENSCARG00000045479)	tmem134 (ENSCARG00000045521) #25	dctd (ENSCARG00000045635)	ENSCARG00000046010	vegfc (ENSCARG00000048535)	ENSCARG00000048565	spcs3 (ENSCARG00000048575)	ENSCARG00000048603	asb5b (ENSCARG00000018865)	wdr17 (ENSCARG00000018888)	gpm6ab (ENSCARG00000018978)
Cyprininae	ANCESTRAL SPECIES	662										ENSGT01100000263483.E.b.a.c.a.a.a	ENSGT01100000263483.E.b.a.c.b.a.a.b	ENSGT00940000156393.a.b.c.b	ENSGT00540000073610.A.a	ENSGT00390000015958.c.a	ENSGT00940000157294.c.b	ENSGT00940000160334.p #22	ENSGT00390000001289.a.f #24	ENSGT00950000182996.b.a.a.b.d.a.f.a.a.a.a.b.b.a	ENSGT00940000158194.i.b	ENSGT00520000055589.d.a.b.b	ENSGT00390000011766.h #25	ENSGT00940000159063.f.a.a	ENSGT01030000234566.e.b.a.a.a.a.n
Goldfish	MODERN SPECIES		GPR78 (ENSCARG00000014122)	htra3a (ENSCARG00000014129)	RAB33B (ENSCARG00000014143)	naa15b (ENSCARG00000014209)	clgn (ENSCARG00000016900)	scoca (ENSCARG00000017016)	ENSCARG00000017032	zgc:56493 (ENSCARG00000017066)	faah2a (ENSCARG00000017083)	TESK1 (ENSCARG00000017202)	ENSCARG00000017266	ENSCARG00000017270	ENSCARG00000017279	ENSCARG00000017294	cntf (ENSCARG00000017305)	cdk2ap2 (ENSCARG00000017310) #22	aip (ENSCARG00000017321) #24	ENSCARG00000017339	ing2 (ENSCARG00000017344)	ENSCARG00000017352	tmem134 (ENSCARG00000017366) #25	irf2a (ENSCARG00000017380)	dctd (ENSCARG00000017400)	ENSCARG00000017526	ENSCARG00000018117	gart (ENSCARG00000018148)	n6amt1 (ENSCARG00000018190)	ADAMTS1 (ENSCARG00000018207)	ENSCARG00000018275	cyyr1 (ENSCARG00000018279)	APP (ENSCARG00000018902)
Cyprininae_a	ANCESTRAL SPECIES	76	ENSGT00950000183174.B.a.e.e.a	ENSGT00950000182915.a.a.b.a	ENSGT00390000008828.fb.b.a	ENSGT00950000183201.b.a.b.d	ENSGT00390000011517.a.a.c.a.b.a.c	ENSGT00390000011517.a.a.c.a.b.a.d	ENSGT00940000154259.b.b.a	ENSGT00940000162502.a.a	ENSGT00940000157807.g.b.l	ENSGT01100000263483.E.b.a.c.b.a.b	ENSGT01100000263483.E.b.a.c.b.a.a.b	ENSGT00940000156393.a.b.c.b	ENSGT00540000073610.A.a	ENSGT00390000015958.c.a	ENSGT00940000157294.c.b	ENSGT00940000160334.p #22	ENSGT00390000001289.a.f #24	ENSGT00950000182996.b.a.a.b.d.a.f.a.a.a.a.b.b.a	ENSGT00520000055589.d.a.b.b	ENSGT00390000011766.h #25	ENSGT00940000159063.f.a.a	ENSGT01030000234566.e.b.a.a.a.a.n
Golden-line barbel	MODERN SPECIES	691				zgc:56493 (ENSSGRG00000051333)	faah2a (ENSSGRG00000051336)	ENSSGRG00000051337	ENSSGRG00000051339	ENSSGRG00000051340	ENSSGRG00000051341	ENSSGRG00000051342	ENSSGRG00000051343	cntf (ENSSGRG00000051344)	ccdc149b (ENSSGRG00000051346)	lgi2b (ENSSGRG00000051347)	ENSSGRG00000051348	cdk2ap2 (ENSSGRG00000051349) #22	aip (ENSSGRG00000051350) #24	STOX2 (ENSSGRG00000051351)	tmem134 (ENSSGRG00000051353) #25	irf2a (ENSSGRG00000051354)	irf2a (ENSSGRG00000051355)	dctd (ENSSGRG00000051356)	TENM3 (ENSSGRG00000051410)
Common carp reference	MODERN SPECIES	22	ENSCCRG00000079931	ENSCCRG00000063458	ENSCCRG00000061939	ENSCCRG00000000441	zgc:56493 (ENSCCRG00000071331)	faah2a (ENSCCRG00000058192)	ENSCCRG00000023502	ENSCCRG00000023521	ENSCCRG00000056721	ENSCCRG00000073840	ENSCCRG00000077796	ENSCCRG00000056872	cntf (ENSCCRG00000059766)	ccdc149b (ENSCCRG00000051983)	lgi2b (ENSCCRG00000051972)	cdk2ap2 (ENSCCRG00000051969) #22	aip (ENSCCRG00000048177) #24	ENSCCRG00000051978	tmem134 (ENSCCRG00000045301) #25	ENSCCRG00000064446	dctd (ENSCCRG00000045283)	ENSCCRG00000045275	vegfc (ENSCCRG00000000931)	spcs3 (ENSCCRG00000031218)	asb5b (ENSCCRG00000061922)	wdr17 (ENSCCRG00000031233)	gpm6ab (ENSCCRG00000074115)	ENSCCRG00000079948	glra3 (ENSCCRG00000050387)	fbxo8 (ENSCCRG00000069917)	cep44 (ENSCCRG00000001108)
Zebrafish	MODERN SPECIES		TXN (ENSDARG00000031435)	faah2a (ENSDARG00000008457)	TESK1 (ENSDARG00000078251)	si:ch211-113e8.5 (ENSDARG00000069707)	ENSDARG00000074610	ENSDARG00000109438	ENSDARG00000095065	zgc:194443 (ENSDARG00000078182)	zgc:152658 (ENSDARG00000018587)	ENSDARG00000079631	ENSDARG00000076585	cntf (ENSDARG00000074662)	ENSDARG00000093120	ccdc149b (ENSDARG00000020857)	lgi2b (ENSDARG00000069701)	cdk2ap2 (ENSDARG00000103145) #22	aip (ENSDARG00000104437) #24	SOD3 (ENSDARG00000079183)	ing2 (ENSDARG00000104907)	STOX2 (ENSDARG00000070162)	tmem134 (ENSDARG00000024828) #25	irf2a (ENSDARG00000007387)	dctd (ENSDARG00000036990)	tenm3 (ENSDARG00000005479)	ENSDARG00000104657	vegfc (ENSDARG00000069640)	spcs3 (ENSDARG00000089976)	asb5b (ENSDARG00000053222)	wdr17 (ENSDARG00000075098)	gpm6ab (ENSDARG00000004621)	glra3 (ENSDARG00000011066)
Euteleosteomorpha	ANCESTRAL SPECIES	270										ENSGT01000000214857	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT01100000263492.b.b.b.a.b.a.a.b.b	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544
Acanthomorphata	ANCESTRAL SPECIES	80										ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT01100000263492.b.b.b.a.b.a.a.b.b	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000166330	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003
Euacanthomorphacea	ANCESTRAL SPECIES	3	ENSGT00940000157037.a.c.b	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT01100000263492.b.b.b.a.b.a.a.b.b	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003
Percomorphaceae	ANCESTRAL SPECIES	17	ENSGT00940000157037.a.c.b	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT01100000263492.b.b.b.a.b.a.a.b.b	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT01100000263492.b.b.b.a.b.a.a.b.b	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT01100000263492.b.b.b.a.b.a.a.b.b.d	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00940000158402	ENSGT00940000162414	ENSGT00740000116263	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00940000177159.c.a.b
Tetraodontidae	ANCESTRAL SPECIES	40	ENSGT01100000263538.A.a.a.b.a.c.a.b	ENSGT00940000157037.a.c.b	ENSGT00940000158402	ENSGT00940000162414	ENSGT00740000116263	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00540000073610.A	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000166330	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00940000177159.c.a.b	ENSGT00940000172773	ENSGT00950000182934.a.a	ENSGT00940000160795
Fugu	MODERN SPECIES	8	ENSTRUG00000031417	ENSTRUG00000023675	ncapg (ENSTRUG00000013625)	fam184b (ENSTRUG00000032924)	ENSTRUG00000022344	APBB2 (ENSTRUG00000013779)	ENSTRUG00000026603	rbm47 (ENSTRUG00000014050)	ENSTRUG00000028351	ENSTRUG00000023679	ENSTRUG00000005602	ankrd49 (ENSTRUG00000027461)	ENSTRUG00000026164	GPR83 (ENSTRUG00000003044)	ENSTRUG00000003697	cdk2ap2 (ENSTRUG00000030905) #22	aip (ENSTRUG00000004014) #24	doc2d (ENSTRUG00000004693)	CABP2 (ENSTRUG00000004846) #21	ENSTRUG00000004874	DLC1 (ENSTRUG00000005140)	spock3 (ENSTRUG00000032115)	ugt8 (ENSTRUG00000031541)	ENSTRUG00000033419	NDST4 (ENSTRUG00000000320)	PRSS12 (ENSTRUG00000000348)	mettl14 (ENSTRUG00000000401)	ENSTRUG00000026317	ENSTRUG00000032089	ENSTRUG00000004059	ADRA1D (ENSTRUG00000002804)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000014165	MATN3 (ENSTNIG00000014166)	ENSTNIG00000000004	inhbab (ENSTNIG00000014168)	ENSTNIG00000001198	ENSTNIG00000000608	ENSTNIG00000001074	hccsb (ENSTNIG00000014170)	ENSTNIG00000001067	ENSTNIG00000014171	ENSTNIG00000014172	ENSTNIG00000014173	cacna1fb (ENSTNIG00000014174)	ankrd49 (ENSTNIG00000014179)	GPR83 (ENSTNIG00000014180)	cdk2ap2 (ENSTNIG00000014181) #22	aip (ENSTNIG00000014182) #24	HACE1 (ENSTNIG00000014201)	bves (ENSTNIG00000014202)	ENSTNIG00000014204	ENSTNIG00000014236	ENSTNIG00000014237	tfap2b (ENSTNIG00000014239)	tfap2b (ENSTNIG00000014240)	ENSTNIG00000014241	PPP1R14A (ENSTNIG00000014242)	tiprl (ENSTNIG00000014243)	blnk (ENSTNIG00000001501)	dntt (ENSTNIG00000017078)	ENSTNIG00000017079	ENSTNIG00000017080
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00940000158402	ENSGT00940000162414	ENSGT00740000116263	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00940000177159.c.a.b
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	1290																cdk2ap2 (ENSLBEG00000023503) #22	aip (ENSLBEG00000023528) #24
Ballan wrasse	MODERN SPECIES	279					znf207b (ENSLBEG00000009466)	ENSLBEG00000009421	ENSLBEG00000009156	septin9b (ENSLBEG00000008643)	rbm47 (ENSLBEG00000008436)	ENSLBEG00000008373	ENSLBEG00000008353	cntf (ENSLBEG00000008342)	ENSLBEG00000008314	ankrd49 (ENSLBEG00000008295)	GPR83 (ENSLBEG00000008254)	cdk2ap2 (ENSLBEG00000008213) #22	aip (ENSLBEG00000008184) #24	ENSLBEG00000008161	ENSLBEG00000008141	mettl14 (ENSLBEG00000008085)	PRSS12 (ENSLBEG00000007988)	NDST4 (ENSLBEG00000007900)	ugt8 (ENSLBEG00000007855)
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00940000163443	ENSGT00940000154757.xb.b	ENSGT00940000158402	ENSGT00940000162414	ENSGT00740000116263	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00540000073610.A	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00940000177159.c.a.b
Perciformes	ANCESTRAL SPECIES	2	ENSGT00940000157037.a.c.b	ENSGT00940000154757.xb.b	ENSGT00940000158402	ENSGT00940000162414	ENSGT00740000116263	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00540000073610.A	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00940000172773
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00940000158572	ENSGT00940000156782.d	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT00950000183029.B.j.c.a	ENSGT01100000263495.A.a.a.n	ENSGT00940000156950.b	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00740000115955.D.a
Lumpfish	MODERN SPECIES		ENSCLMG00005005376	ENSCLMG00005005377	IGFBP4 (ENSCLMG00005005378)	SMARCE1 (ENSCLMG00005005381)	ccr7 (ENSCLMG00005005401)	TNS4 (ENSCLMG00005005404)	KRT222 (ENSCLMG00005005407)	krt97 (ENSCLMG00005005409)	RIMS1 (ENSCLMG00005005411)	ENSCLMG00005005417	EEF1A1 (ENSCLMG00005006408)	ENSCLMG00005006812	GRIA2 (ENSCLMG00005006817)	ankrd49 (ENSCLMG00005006946)	GPR83 (ENSCLMG00005006948)	cdk2ap2 (ENSCLMG00005006949) #22	aip (ENSCLMG00005006952) #24	tmem134 (ENSCLMG00005006953) #25	serping1 (ENSCLMG00005006957)	doc2d (ENSCLMG00005007038)	ENSCLMG00005007039 #21	ENSCLMG00005007041	DLC1 (ENSCLMG00005007045)	ENSCLMG00005007356	SLC44A1 (ENSCLMG00005007359)	spock3 (ENSCLMG00005007452)	ugt8 (ENSCLMG00005007454)	ENSCLMG00005007460	PRSS12 (ENSCLMG00005002812)	mettl14 (ENSCLMG00005002849)	ENSCLMG00005002962
Stickleback	MODERN SPECIES	4	ENSGACG00000018123	IGFBP4 (ENSGACG00000018120)	SMARCE1 (ENSGACG00000018114)	ccr7 (ENSGACG00000018112)	ENSGACG00000018111	KRT222 (ENSGACG00000018110)	ENSGACG00000018109	krt97 (ENSGACG00000018108)	RIMS1 (ENSGACG00000018104)	ENSGACG00000018097	eef1a1b (ENSGACG00000018090)	ENSGACG00000018088	GRIA2 (ENSGACG00000018071)	ankrd49 (ENSGACG00000018070)	GPR83 (ENSGACG00000018066)	cdk2ap2 (ENSGACG00000018065) #22	aip (ENSGACG00000018060) #24	tmem134 (ENSGACG00000018056) #25	serping1 (ENSGACG00000018054)	doc2d (ENSGACG00000018051)	ENSGACG00000018047 #21	LONRF1 (ENSGACG00000018037)	DLC1 (ENSGACG00000018034)	SLC44A1 (ENSGACG00000018031)	spock3 (ENSGACG00000018028)	ugt8 (ENSGACG00000018024)	ENSGACG00000018022	PRSS12 (ENSGACG00000018013)	mettl14 (ENSGACG00000018009)	ENSGACG00000018001	ENSGACG00000017996
Perciformes_a	ANCESTRAL SPECIES		ENSGT00940000157037.a.c.b	ENSGT00940000154757.xb.b	ENSGT00940000158402	ENSGT00940000162414	ENSGT00740000116263	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00540000073610.A	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00940000172773
Pike perch	MODERN SPECIES	179																cdk2ap2 (ENSSLUG00000013900) #22	aip (ENSSLUG00000013907) #24	tmem134 (ENSSLUG00000013915) #25	serping1 (ENSSLUG00000013921)	doc2d (ENSSLUG00000013951)	ENSSLUG00000013963 #21	LONRF1 (ENSSLUG00000013980)	ENSSLUG00000013986	DLC1 (ENSSLUG00000013994)	ENSSLUG00000014067	SLC44A1 (ENSSLUG00000014077)	spock3 (ENSSLUG00000014095)	ugt8 (ENSSLUG00000014107)	ENSSLUG00000014132	PRSS12 (ENSSLUG00000014248)	mettl14 (ENSSLUG00000014275)
Channel bull blenny	MODERN SPECIES		ENSCGOG00000005421	ENSCGOG00000005388	ITLN1 (ENSCGOG00000005276)	slit2 (ENSCGOG00000003258)	ENSCGOG00000003184	ncapg (ENSCGOG00000002940)	fam184b (ENSCGOG00000002921)	ENSCGOG00000002883	APBB2 (ENSCGOG00000002569)	ENSCGOG00000002566	rbm47 (ENSCGOG00000002564)	ENSCGOG00000002562	ENSCGOG00000002559	ankrd49 (ENSCGOG00000002556)	GPR83 (ENSCGOG00000002553)	cdk2ap2 (ENSCGOG00000002544) #22	aip (ENSCGOG00000002540) #24	tmem134 (ENSCGOG00000002533) #25	serping1 (ENSCGOG00000002518)	doc2d (ENSCGOG00000002516)	ENSCGOG00000002502 #21	LONRF1 (ENSCGOG00000002496)	ENSCGOG00000002493	DLC1 (ENSCGOG00000002484)	SLC44A1 (ENSCGOG00000002257)	spock3 (ENSCGOG00000002254)	ugt8 (ENSCGOG00000002253)	ENSCGOG00000002252	ENSCGOG00000001419	PRSS12 (ENSCGOG00000001351)	mettl14 (ENSCGOG00000001256)
Eupecaria_C	ANCESTRAL SPECIES	14	ENSGT00940000163443	ENSGT00940000154757.xb.b	ENSGT00940000158402	ENSGT00940000162414	ENSGT00740000116263	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00540000073610.A	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00940000177159.c.a.b	ENSGT00940000172773
Gilthead seabream	MODERN SPECIES		ENSSAUG00010021018	ITLN1 (ENSSAUG00010021015)	slit2 (ENSSAUG00010019509)	ENSSAUG00010019434	ENSSAUG00010019433	ncapg (ENSSAUG00010019397)	fam184b (ENSSAUG00010019391)	ENSSAUG00010019388	APBB2 (ENSSAUG00010018997)	ENSSAUG00010018989	rbm47 (ENSSAUG00010018982)	ENSSAUG00010018980	ENSSAUG00010018978	ankrd49 (ENSSAUG00010018976)	GPR83 (ENSSAUG00010018974)	cdk2ap2 (ENSSAUG00010018970) #22	aip (ENSSAUG00010018966) #24	tmem134 (ENSSAUG00010018962) #25	serping1 (ENSSAUG00010018956)	doc2d (ENSSAUG00010018953)	ENSSAUG00010018950 #21	ENSSAUG00010018949	DLC1 (ENSSAUG00010018938)	SLC44A1 (ENSSAUG00010018918)	spock3 (ENSSAUG00010018917)	ugt8 (ENSSAUG00010018916)	NDST4 (ENSSAUG00010018887)	PRSS12 (ENSSAUG00010018882)	mettl14 (ENSSAUG00010018877)	ENSSAUG00010018874	ENSSAUG00010018869
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	13	ENSGT00940000163443	ENSGT00940000154757.xb.b	ENSGT00940000158402	ENSGT00940000162414	ENSGT01090000261355	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00540000073610.A	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00940000172773	ENSGT00940000177159.d
European seabass	MODERN SPECIES	20	ENSDLAG00005027874	ENSDLAG00005026201	ENSDLAG00005026202	slit2 (ENSDLAG00005026214)	ENSDLAG00005026228	ncapg (ENSDLAG00005026238)	fam184b (ENSDLAG00005026245)	ENSDLAG00005026249	APBB2 (ENSDLAG00005026256)	ENSDLAG00005026267	RBM47 (ENSDLAG00005026268)	ENSDLAG00005029357	ENSDLAG00005031545	ENSDLAG00005029200	ENSDLAG00005026273	ENSDLAG00005034414 #22	ENSDLAG00005026276 #24	ENSDLAG00005026277 #25	serping1 (ENSDLAG00005026279)	doc2d (ENSDLAG00005026280)	ENSDLAG00005026281 #21	ENSDLAG00005026283	ENSDLAG00005026287	ENSDLAG00005026294	spock3 (ENSDLAG00005026459)	ugt8 (ENSDLAG00005026297)	ENSDLAG00005026298	ENSDLAG00005026300	mettl14 (ENSDLAG00005026301)	ENSDLAG00005027483	ENSDLAG00005005187
Large yellow croaker	MODERN SPECIES	481	BEST3 (ENSLCRG00005006211)	nots (ENSLCRG00005006215)	cct2 (ENSLCRG00005006220)	ENSLCRG00005006228	ENSLCRG00005006234	ENSLCRG00005006238	ncapg (ENSLCRG00005006269)	fam184b (ENSLCRG00005007942)	ENSLCRG00005007948	APBB2 (ENSLCRG00005007955)	rbm47 (ENSLCRG00005008223)	ENSLCRG00005008232	ENSLCRG00005008238	ankrd49 (ENSLCRG00005008241)	GPR83 (ENSLCRG00005008247)	cdk2ap2 (ENSLCRG00005008253) #22	aip (ENSLCRG00005008260) #24	tmem134 (ENSLCRG00005008265) #25	serping1 (ENSLCRG00005008270)	doc2d (ENSLCRG00005008275)	ENSLCRG00005008277 #21	ENSLCRG00005008280	ENSLCRG00005008285	DLC1 (ENSLCRG00005008299)	SLC44A1 (ENSLCRG00005008681)	spock3 (ENSLCRG00005008886)	spock3 (ENSLCRG00005008890)	ugt8 (ENSLCRG00005008894)	ENSLCRG00005008898	PRSS12 (ENSLCRG00005008922)	mettl14 (ENSLCRG00005008932)
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT01100000263492.b.b.b.a.b.a.a.b.b.d	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00940000157037.a.c.b	ENSGT00940000163443	ENSGT00940000154757.xb.b	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00540000073610.A	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT01100000263492.b.b.b.a.b.a.a.b.b.d	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00940000172773
Zig-zag eel	MODERN SPECIES		ENSMAMG00000019496	slit2 (ENSMAMG00000019395)	ENSMAMG00000025964	ENSMAMG00000019338	ENSMAMG00000026994	ENSMAMG00000027717	ncapg (ENSMAMG00000019295)	fam184b (ENSMAMG00000019282)	APBB2 (ENSMAMG00000019213)	ENSMAMG00000019195	RBM47 (ENSMAMG00000019143)	ENSMAMG00000019124	ENSMAMG00000027049	ENSMAMG00000027762	ENSMAMG00000019054	ENSMAMG00000028480 #22	ENSMAMG00000027400	ENSMAMG00000019020 #24	ENSMAMG00000019010 #25	serping1 (ENSMAMG00000018978)	doc2d (ENSMAMG00000018968)	ENSMAMG00000018912 #21	ENSMAMG00000018858	ENSMAMG00000018759	ENSMAMG00000018744	spock3 (ENSMAMG00000018735)	ugt8 (ENSMAMG00000018719)	ENSMAMG00000018700	ENSMAMG00000018662	mettl14 (ENSMAMG00000018629)	ENSMAMG00000018606
Anabantoidei	ANCESTRAL SPECIES		ENSGT00940000157037.a.c.b	ENSGT00940000163443	ENSGT00940000154757.xb.b	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00540000073610.A	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00950000182934.a.a	ENSGT00940000160795
Climbing perch	MODERN SPECIES		ENSATEG00000029524	ENSATEG00000029304	ENSATEG00000028834	ENSATEG00000029565	slit2 (ENSATEG00000018568)	ENSATEG00000018496	ncapg (ENSATEG00000018482)	fam184b (ENSATEG00000018472)	ENSATEG00000018462	ENSATEG00000018416	ENSATEG00000018400	ENSATEG00000018384	ENSATEG00000018369	ENSATEG00000029708	ENSATEG00000018334	ENSATEG00000018317 #22	ENSATEG00000028481 #24	ENSATEG00000018277 #25	serping1 (ENSATEG00000018244)	doc2d (ENSATEG00000018216)	ENSATEG00000018160 #21	ENSATEG00000018122	ENSATEG00000018111	ENSATEG00000018022	ENSATEG00000017967	spock3 (ENSATEG00000017945)	ugt8 (ENSATEG00000017927)	ENSATEG00000017903	ENSATEG00000017870	mettl14 (ENSATEG00000017832)	ENSATEG00000017813
Siamese fighting fish	MODERN SPECIES		ENSBSLG00000009995	ENSBSLG00000010027	slit2 (ENSBSLG00000010094)	ENSBSLG00000011644	ncapg (ENSBSLG00000011841)	fam184b (ENSBSLG00000012293)	ENSBSLG00000012319	APBB2 (ENSBSLG00000013273)	ENSBSLG00000013670	rbm47 (ENSBSLG00000013713)	ENSBSLG00000013767	cntf (ENSBSLG00000013773)	ankrd49 (ENSBSLG00000013789)	ENSBSLG00000013793	ENSBSLG00000013795	cdk2ap2 (ENSBSLG00000013806) #22	aip (ENSBSLG00000013814) #24	tmem134 (ENSBSLG00000013830) #25	serping1 (ENSBSLG00000013845)	doc2d (ENSBSLG00000013901)	ENSBSLG00000013918 #21	ENSBSLG00000013933	DLC1 (ENSBSLG00000013981)	SLC44A1 (ENSBSLG00000014605)	spock3 (ENSBSLG00000014816)	ugt8 (ENSBSLG00000014839)	ENSBSLG00000014859	ENSBSLG00000014911	mettl14 (ENSBSLG00000014933)	ENSBSLG00000015020	ENSBSLG00000015024
Carangaria	ANCESTRAL SPECIES		ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00940000172773
Carangaria_A	ANCESTRAL SPECIES	14	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00940000172773
Seriola	ANCESTRAL SPECIES	29	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828.bb	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00940000177159.c.a.a.b
Greater amberjack	MODERN SPECIES	101	slit2 (ENSSDUG00000022630)	ENSSDUG00000022649	ENSSDUG00000022652	ncapg (ENSSDUG00000022654)	fam184b (ENSSDUG00000022659)	ENSSDUG00000022662	APBB2 (ENSSDUG00000022666)	ENSSDUG00000022677	rbm47 (ENSSDUG00000022684)	ENSSDUG00000000083	ENSSDUG00000000112	cntf (ENSSDUG00000000128)	ENSSDUG00000000152	ankrd49 (ENSSDUG00000000192)	GPR83 (ENSSDUG00000000202)	cdk2ap2 (ENSSDUG00000000209) #22	aip (ENSSDUG00000000221) #24	tmem134 (ENSSDUG00000000262) #25	serping1 (ENSSDUG00000000275)	doc2d (ENSSDUG00000000318)	ENSSDUG00000000372 #21	ENSSDUG00000000395	DLC1 (ENSSDUG00000000411)	SLC44A1 (ENSSDUG00000000443)	spock3 (ENSSDUG00000000546)	ugt8 (ENSSDUG00000000562)	ENSSDUG00000000591	PRSS12 (ENSSDUG00000000645)	mettl14 (ENSSDUG00000000688)	ENSSDUG00000000699	ENSSDUG00000000720
Yellowtail amberjack	MODERN SPECIES	2974	CHRNA9 (ENSSLDG00000002511)	ENSSLDG00000002547	slit2 (ENSSLDG00000002730)	ENSSLDG00000002907	ENSSLDG00000002925	ncapg (ENSSLDG00000002943)	ENSSLDG00000002967	APBB2 (ENSSLDG00000002995)	rbm47 (ENSSLDG00000003109)	ENSSLDG00000003245	ENSSLDG00000003287	cntf (ENSSLDG00000003316)	ENSSLDG00000003345	ankrd49 (ENSSLDG00000003390)	GPR83 (ENSSLDG00000003405)	cdk2ap2 (ENSSLDG00000003447) #22	aip (ENSSLDG00000003465) #24	tmem134 (ENSSLDG00000003494) #25	serping1 (ENSSLDG00000003519)	ENSSLDG00000003566	ENSSLDG00000003590	ENSSLDG00000003609 #21	LONRF1 (ENSSLDG00000003645)	DLC1 (ENSSLDG00000003703)	ENSSLDG00000003807	SLC44A1 (ENSSLDG00000003838)	spock3 (ENSSLDG00000003911)	ugt8 (ENSSLDG00000003939)	ENSSLDG00000003978	ENSSLDG00000004076	PRSS12 (ENSSLDG00000004115)
Barramundi perch	MODERN SPECIES	108	ENSLCAG00010001572	ENSLCAG00010001586	ENSLCAG00010001600	slit2 (ENSLCAG00010001635)	ENSLCAG00010001756	ENSLCAG00010001761	ENSLCAG00010001764	ncapg (ENSLCAG00010001774)	ENSLCAG00010001793	APBB2 (ENSLCAG00010001813)	rbm47 (ENSLCAG00010001829)	ENSLCAG00010001840	ENSLCAG00010001850	ankrd49 (ENSLCAG00010001851)	GPR83 (ENSLCAG00010001855)	cdk2ap2 (ENSLCAG00010001859) #22	aip (ENSLCAG00010001863) #24	tmem134 (ENSLCAG00010001871) #25	serping1 (ENSLCAG00010001877)	doc2d (ENSLCAG00010001889)	ENSLCAG00010001903 #21	ENSLCAG00010001933	DLC1 (ENSLCAG00010001936)	SLC44A1 (ENSLCAG00010001947)	spock3 (ENSLCAG00010001958)	ugt8 (ENSLCAG00010001962)	ENSLCAG00010001971	PRSS12 (ENSLCAG00010001981)	mettl14 (ENSLCAG00010001982)	ENSLCAG00010001987	ENSLCAG00010001992
Pleuronectoidei	ANCESTRAL SPECIES	21	ENSGT01100000263538.A.a.a.b.a.c.a.b	ENSGT00940000157037.a.c.b	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00940000172773	ENSGT00950000182934.a.a
Tongue sole	MODERN SPECIES	19	evpla (ENSCSEG00000008174)	ten1 (ENSCSEG00000008197)	acox1 (ENSCSEG00000008205)	RHBDF2 (ENSCSEG00000008251)	aanat1 (ENSCSEG00000008294)	UBE2O (ENSCSEG00000008301)	SPHK1 (ENSCSEG00000008348)	cygb2 (ENSCSEG00000008356)	ENSCSEG00000008381	slc25a38b (ENSCSEG00000008670)	ttc26 (ENSCSEG00000008692)	ubn2a (ENSCSEG00000008734)	ankrd49 (ENSCSEG00000008786)	GPR83 (ENSCSEG00000008789)	aip (ENSCSEG00000008795) #24	cdk2ap2 (ENSCSEG00000008805) #22	tmem134 (ENSCSEG00000008815) #25	doc2d (ENSCSEG00000008834)	ENSCSEG00000008864 #21	ENSCSEG00000008911	DLC1 (ENSCSEG00000008933)	SLC44A1 (ENSCSEG00000008984)	ENSCSEG00000009027	spock3 (ENSCSEG00000009038)	ugt8 (ENSCSEG00000009068)	ENSCSEG00000009083	ENSCSEG00000009097	PRSS12 (ENSCSEG00000009112)	mettl14 (ENSCSEG00000009185)	ENSCSEG00000009242	ADRA1D (ENSCSEG00000009270)
Turbot	MODERN SPECIES	20	CHRNA9 (ENSSMAG00000010403)	ENSSMAG00000010389	ENSSMAG00000010291	slit2 (ENSSMAG00000009998)	ENSSMAG00000009963	ncapg (ENSSMAG00000009929)	fam184b (ENSSMAG00000009902)	ENSSMAG00000009871	APBB2 (ENSSMAG00000009829)	ENSSMAG00000009801	RBM47 (ENSSMAG00000009744)	ENSSMAG00000009695	ENSSMAG00000009675	ENSSMAG00000029468	ENSSMAG00000009656	ENSSMAG00000009641 #22	ENSSMAG00000009628 #24	ENSSMAG00000009611 #25	serping1 (ENSSMAG00000009595)	doc2d (ENSSMAG00000009575)	ENSSMAG00000009562 #21	ENSSMAG00000009537	ENSSMAG00000009448	ENSSMAG00000009405	spock3 (ENSSMAG00000009372)	ugt8 (ENSSMAG00000009307)	ENSSMAG00000009213	ENSSMAG00000009162	mettl14 (ENSSMAG00000009127)	ENSSMAG00000034718	ENSSMAG00000022575
Ovalentaria	ANCESTRAL SPECIES		ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00940000177159.c.a.b
Atherinomorphae	ANCESTRAL SPECIES	20	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00740000116263	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00940000172773
Oryzias	ANCESTRAL SPECIES	15	ENSGT00940000157037.a.c.b	ENSGT00940000158402	ENSGT00940000162414	ENSGT00740000116263	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000166330	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00950000182934.a.a	ENSGT00940000160795
Oryzias_b	ANCESTRAL SPECIES	29	ENSGT01100000263538.A.a.a.b.a.c.a.b	ENSGT00940000157037.a.c.b	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000166330	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00950000182934.a.a	ENSGT00940000160795
Indian medaka	MODERN SPECIES	21	ENSOMEG00000000281	ENSOMEG00000011698	slit2 (ENSOMEG00000011616)	ENSOMEG00000011250	ncapg (ENSOMEG00000011164)	fam184b (ENSOMEG00000011066)	ENSOMEG00000010989	APBB2 (ENSOMEG00000010924)	ENSOMEG00000010829	rbm47 (ENSOMEG00000010730)	ENSOMEG00000010644	ENSOMEG00000010624	cntf (ENSOMEG00000010607)	ankrd49 (ENSOMEG00000010593)	GPR83 (ENSOMEG00000010580)	cdk2ap2 (ENSOMEG00000010495) #22	aip (ENSOMEG00000010546) #24	tmem134 (ENSOMEG00000010469) #25	serping1 (ENSOMEG00000010446)	doc2d (ENSOMEG00000010412)	ENSOMEG00000010328 #21	LONRF1 (ENSOMEG00000010248)	ENSOMEG00000010230	lgi2b (ENSOMEG00000010219)	ccdc149b (ENSOMEG00000010189)	SOD3 (ENSOMEG00000010084)	dhx15 (ENSOMEG00000010067)	ENSOMEG00000010003	ENSOMEG00000009899	slc22a7b.1 (ENSOMEG00000009767)	ENSOMEG00000009744
Javanese ricefish	MODERN SPECIES		DRD5 (ENSOJAG00000000782)	slit2 (ENSOJAG00000001090)	ENSOJAG00000002426	ENSOJAG00000002444	ncapg (ENSOJAG00000002472)	ENSOJAG00000002537	ENSOJAG00000002547	ENSOJAG00000002567	APBB2 (ENSOJAG00000002694)	ENSOJAG00000003058	rbm47 (ENSOJAG00000003074)	ENSOJAG00000003102	ENSOJAG00000003122	ENSOJAG00000003131	GPR83 (ENSOJAG00000003142)	cdk2ap2 (ENSOJAG00000003156) #22	aip (ENSOJAG00000003163) #24	tmem134 (ENSOJAG00000003174) #25	serping1 (ENSOJAG00000003185)	doc2d (ENSOJAG00000003208)	ENSOJAG00000003228 #21	ENSOJAG00000003263	DLC1 (ENSOJAG00000003313)	ENSOJAG00000003395	spock3 (ENSOJAG00000003474)	ugt8 (ENSOJAG00000003486)	ENSOJAG00000003664	PRSS12 (ENSOJAG00000005001)	mettl14 (ENSOJAG00000005079)	ENSOJAG00000005127	ADRA1D (ENSOJAG00000005139)
Oryzias_a	ANCESTRAL SPECIES	23	ENSGT00940000157037.a.c.b	ENSGT00940000158402	ENSGT00940000162414	ENSGT00740000116263	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000166330	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00950000182934.a.a	ENSGT00940000160795
Japanese Medaka HdrR	MODERN SPECIES		slit2 (ENSORLG00000005750)	ENSORLG00000029006	ENSORLG00000027284	ENSORLG00000027398	ncapg (ENSORLG00000005794)	fam184b (ENSORLG00000028239)	ENSORLG00000005813	APBB2 (ENSORLG00000005834)	ENSORLG00000022661	rbm47 (ENSORLG00000005847)	ENSORLG00000027161	ENSORLG00000023699	cntf (ENSORLG00000029072)	ankrd49 (ENSORLG00000024223)	GPR83 (ENSORLG00000025759)	cdk2ap2 (ENSORLG00000029903) #22	aip (ENSORLG00000005898) #24	tmem134 (ENSORLG00000005906) #25	serping1 (ENSORLG00000005916)	doc2d (ENSORLG00000023518)	ENSORLG00000005922 #21	ENSORLG00000005932	DLC1 (ENSORLG00000005951)	ENSORLG00000005967	spock3 (ENSORLG00000005978)	ugt8 (ENSORLG00000005985)	ENSORLG00000023982	ENSORLG00000006029	PRSS12 (ENSORLG00000022161)	mettl14 (ENSORLG00000006053)	ENSORLG00000019804
Chinese medaka	MODERN SPECIES	96	rhoh (ENSOSIG00000015436)	CHRNA9 (ENSOSIG00000015435)	ENSOSIG00000015434	ENSOSIG00000015432	slit2 (ENSOSIG00000006578)	ENSOSIG00000006478	ENSOSIG00000006477	ncapg (ENSOSIG00000006442)	fam184b (ENSOSIG00000006440)	APBB2 (ENSOSIG00000006436)	ENSOSIG00000006434	rbm47 (ENSOSIG00000006409)	ENSOSIG00000006400	ankrd49 (ENSOSIG00000006399)	GPR83 (ENSOSIG00000006395)	cdk2ap2 (ENSOSIG00000006393) #22	aip (ENSOSIG00000006390) #24	tmem134 (ENSOSIG00000006388) #25	serping1 (ENSOSIG00000006387)	ENSOSIG00000006386	ENSOSIG00000006385	ENSOSIG00000006384 #21	ENSOSIG00000006383	DLC1 (ENSOSIG00000005932)	ENSOSIG00000005912	spock3 (ENSOSIG00000005898)	ugt8 (ENSOSIG00000005896)	NDST4 (ENSOSIG00000004972)	PRSS12 (ENSOSIG00000004935)	mettl14 (ENSOSIG00000004359)
Cyprinodontiformes	ANCESTRAL SPECIES	18	ENSGT00940000154757.xb.b	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00940000172773
Cyprinodontoidei	ANCESTRAL SPECIES	15	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.ob.a	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00740000115955.D
NAME_4	ANCESTRAL SPECIES	70	ENSGT00940000154757.xb.b	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.ob.a	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00950000182934.a.a	ENSGT00940000160795
Sheepshead minnow	MODERN SPECIES	751				zbtb20 (ENSCVAG00000009166)	slc25a5 (ENSCVAG00000009189)	ENSCVAG00000000263	cdc23 (ENSCVAG00000009231)	kif20a (ENSCVAG00000009238)	zgc:175280 (ENSCVAG00000009270)	CASR (ENSCVAG00000009575)	b4galt4 (ENSCVAG00000009602)	ENSCVAG00000009609	gsx1 (ENSCVAG00000009613)	ENSCVAG00000009621	GPR83 (ENSCVAG00000009640)	cdk2ap2 (ENSCVAG00000009654) #22	aip (ENSCVAG00000010060) #24	tmem134 (ENSCVAG00000010077) #25	ENSCVAG00000010087	ENSCVAG00000010103
Mummichog	MODERN SPECIES	2223	ITLN1 (ENSFHEG00000008210)	slit2 (ENSFHEG00000008163)	ENSFHEG00000008086	ncapg (ENSFHEG00000008070)	fam184b (ENSFHEG00000008050)	ENSFHEG00000008022	ENSFHEG00000007970	ENSFHEG00000007962	ENSFHEG00000007947	rbm47 (ENSFHEG00000007938)	ENSFHEG00000007874	ENSFHEG00000007870	cntf (ENSFHEG00000007866)	ankrd49 (ENSFHEG00000007855)	GPR83 (ENSFHEG00000007844)	cdk2ap2 (ENSFHEG00000007828) #22	aip (ENSFHEG00000007799) #24	tmem134 (ENSFHEG00000007796) #25	serping1 (ENSFHEG00000007777)	doc2d (ENSFHEG00000007738)	ENSFHEG00000007692 #21	ENSFHEG00000007672	DLC1 (ENSFHEG00000007615)	SLC44A1 (ENSFHEG00000007484)	ENSFHEG00000007447	ugt8 (ENSFHEG00000007425)
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.ob.a	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00740000115955.D
Poecilia	ANCESTRAL SPECIES	6	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.ob.a	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00740000115955.D
NAME_6	ANCESTRAL SPECIES	4	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.ob.a	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00740000115955.D
Sailfin molly	MODERN SPECIES	236	itln3 (ENSPLAG00000023658)	slit2 (ENSPLAG00000023771)	ENSPLAG00000023823	ncapg (ENSPLAG00000023836)	ENSPLAG00000023843	ENSPLAG00000023855	ENSPLAG00000002029	ENSPLAG00000002040	ENSPLAG00000002053	rbm47 (ENSPLAG00000002072)	ENSPLAG00000002081	ENSPLAG00000002093	ENSPLAG00000002099	ankrd49 (ENSPLAG00000002104)	GPR83 (ENSPLAG00000002121)	cdk2ap2 (ENSPLAG00000002137) #22	aip (ENSPLAG00000002153) #24	tmem134 (ENSPLAG00000002167) #25	serping1 (ENSPLAG00000002181)	doc2d (ENSPLAG00000002217)	ENSPLAG00000000035 #21	ENSPLAG00000002253	DLC1 (ENSPLAG00000002301)	ENSPLAG00000002324	SLC44A1 (ENSPLAG00000002343)	spock3 (ENSPLAG00000002369)	ugt8 (ENSPLAG00000002381)
Amazon molly	MODERN SPECIES	296	slit2 (ENSPFOG00000008688)	ENSPFOG00000008607	ncapg (ENSPFOG00000008411)	fam184b (ENSPFOG00000024529)	ENSPFOG00000008367	APBB2 (ENSPFOG00000008167)	ENSPFOG00000024775	ENSPFOG00000008041	rbm47 (ENSPFOG00000007997)	ENSPFOG00000007955	ENSPFOG00000007950	cntf (ENSPFOG00000007947)	ENSPFOG00000007935	ankrd49 (ENSPFOG00000007925)	GPR83 (ENSPFOG00000007868)	cdk2ap2 (ENSPFOG00000007836) #22	aip (ENSPFOG00000007751) #24	tmem134 (ENSPFOG00000007689) #25	serping1 (ENSPFOG00000007612)	doc2d (ENSPFOG00000007517)	ENSPFOG00000007477 #21	ENSPFOG00000007312	DLC1 (ENSPFOG00000007028)	SLC44A1 (ENSPFOG00000006837)	spock3 (ENSPFOG00000006689)	ugt8 (ENSPFOG00000006587)	ENSPFOG00000006177	PRSS12 (ENSPFOG00000005977)	mettl14 (ENSPFOG00000005875)	ENSPFOG00000022092	ENSPFOG00000020388
Guppy	MODERN SPECIES	439	itln3 (ENSPREG00000007822)	slit2 (ENSPREG00000007911)	ENSPREG00000008200	ncapg (ENSPREG00000008240)	fam184b (ENSPREG00000008279)	ENSPREG00000008319	APBB2 (ENSPREG00000008369)	ENSPREG00000008411	ENSPREG00000008421	rbm47 (ENSPREG00000008456)	ENSPREG00000008509	ENSPREG00000008530	cntf (ENSPREG00000008534)	ankrd49 (ENSPREG00000008550)	GPR83 (ENSPREG00000008559)	cdk2ap2 (ENSPREG00000008571) #22	aip (ENSPREG00000008592) #24	tmem134 (ENSPREG00000008637) #25	serping1 (ENSPREG00000008703)	doc2d (ENSPREG00000008728)	ENSPREG00000008744 #21	ENSPREG00000008770	DLC1 (ENSPREG00000008816)	SLC44A1 (ENSPREG00000008914)	spock3 (ENSPREG00000008964)	ugt8 (ENSPREG00000008999)	ENSPREG00000009037	PRSS12 (ENSPREG00000009070)	mettl14 (ENSPREG00000009092)	ENSPREG00000009111	ADRA1D (ENSPREG00000009126)
Platyfish	MODERN SPECIES	19	DRD5 (ENSXMAG00000020171)	itln3 (ENSXMAG00000009689)	slit2 (ENSXMAG00000009716)	ENSXMAG00000009809	ncapg (ENSXMAG00000009813)	fam184b (ENSXMAG00000009837)	ENSXMAG00000029731	APBB2 (ENSXMAG00000009844)	ENSXMAG00000009863	rbm47 (ENSXMAG00000009874)	ENSXMAG00000022840	ENSXMAG00000024104	cntf (ENSXMAG00000009887)	ankrd49 (ENSXMAG00000009888)	GPR83 (ENSXMAG00000028552)	cdk2ap2 (ENSXMAG00000028441) #22	aip (ENSXMAG00000021976) #24	tmem134 (ENSXMAG00000009915) #25	serping1 (ENSXMAG00000009930)	doc2d (ENSXMAG00000009950)	ENSXMAG00000009968 #21	LONRF1 (ENSXMAG00000009974)	DLC1 (ENSXMAG00000009985)	SLC44A1 (ENSXMAG00000016107)	spock3 (ENSXMAG00000024327)	ugt8 (ENSXMAG00000023571)	ENSXMAG00000017808	PRSS12 (ENSXMAG00000017835)	mettl14 (ENSXMAG00000017846)	ENSXMAG00000024313	ENSXMAG00000026999
Aplocheiloidei	ANCESTRAL SPECIES	17	ENSGT01100000263538.A.a.a.b.a.c.a.b	ENSGT00940000157037.a.c.b	ENSGT00940000163443	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00940000172773	ENSGT00950000182934.a.a
Turquoise killifish	MODERN SPECIES	1611	Nfu_g_1_018275 (ENSNFUG00015005644)	pla2g6 (ENSNFUG00015000287)	ENSNFUG00015000414	ENSNFUG00015000423	ENSNFUG00015000431	ENSNFUG00015000436	ncapg (ENSNFUG00015000473)	FAM184B (ENSNFUG00015000562)	ENSNFUG00015000597	APBB2 (ENSNFUG00015000632)	RBM47 (ENSNFUG00015000673)	ZFP91 (ENSNFUG00015000683)	Nfu_g_1_018191 (ENSNFUG00015000697)	ANKRD49 (ENSNFUG00015000702)	GPR83 (ENSNFUG00015000709)	cdk2ap2 (ENSNFUG00015000721) #22	aip (ENSNFUG00015000731) #24	TMEM134 (ENSNFUG00015000746) #25	serping1 (ENSNFUG00015000759)	doc2d (ENSNFUG00015000765)	ENSNFUG00015000774	ENSNFUG00015000780 #21	LONRF1 (ENSNFUG00015000785)	DLC1 (ENSNFUG00015000810)	SLC44A1A (ENSNFUG00015000886)	spock3 (ENSNFUG00015000913)	ugt8 (ENSNFUG00015000921)	NDST4 (ENSNFUG00015000947)	ENSNFUG00015001048	ENSNFUG00015001052	C11ORF82 (ENSNFUG00015001056)
Mangrove rivulus	MODERN SPECIES		ENSKMAG00000000075	itln3 (ENSKMAG00000000076)	slit2 (ENSKMAG00000000077)	ENSKMAG00000000078	ncapg (ENSKMAG00000000079)	fam184b (ENSKMAG00000000080)	ENSKMAG00000000081	ENSKMAG00000000082	APBB2 (ENSKMAG00000000083)	rbm47 (ENSKMAG00000000084)	ENSKMAG00000000085	ENSKMAG00000000086	cntf (ENSKMAG00000000087)	ankrd49 (ENSKMAG00000000088)	GPR83 (ENSKMAG00000000089)	cdk2ap2 (ENSKMAG00000000090) #22	aip (ENSKMAG00000000091) #24	tmem134 (ENSKMAG00000000092) #25	serping1 (ENSKMAG00000000093)	doc2d (ENSKMAG00000000094)	ENSKMAG00000000095 #21	ENSKMAG00000000096	DLC1 (ENSKMAG00000000097)	SLC44A1 (ENSKMAG00000000098)	spock3 (ENSKMAG00000000099)	ugt8 (ENSKMAG00000000100)	ENSKMAG00000000101	PRSS12 (ENSKMAG00000000102)	mettl14 (ENSKMAG00000000103)	ENSKMAG00000000104	ADRA1D (ENSKMAG00000000105)
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00940000177159.c.a.b
Pomacentridae	ANCESTRAL SPECIES	8	ENSGT00940000158402	ENSGT00940000162414	ENSGT01090000261355	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00940000177159.c.a.b	ENSGT00940000172773
Pomacentridae_A	ANCESTRAL SPECIES		ENSGT00940000154757.xb.b	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00940000177159.c.a.b	ENSGT00940000172773
Amphiprion	ANCESTRAL SPECIES		ENSGT00940000155857.e.a	ENSGT00940000154757.xb.b	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00940000177159.c.b	ENSGT00940000177159.c.a.b
Orange clownfish	MODERN SPECIES	17	ENSAPEG00000018945	ITLN1 (ENSAPEG00000018922)	slit2 (ENSAPEG00000018808)	ENSAPEG00000018734	ncapg (ENSAPEG00000018613)	fam184b (ENSAPEG00000018574)	ENSAPEG00000018510	APBB2 (ENSAPEG00000018459)	ENSAPEG00000018373	rbm47 (ENSAPEG00000018304)	ENSAPEG00000018269	ENSAPEG00000018284	ENSAPEG00000018247	ankrd49 (ENSAPEG00000018241)	GPR83 (ENSAPEG00000018197)	cdk2ap2 (ENSAPEG00000018169) #22	aip (ENSAPEG00000018153) #24	tmem134 (ENSAPEG00000018129) #25	serping1 (ENSAPEG00000018091)	doc2d (ENSAPEG00000018075)	ENSAPEG00000018055 #21	ENSAPEG00000018036	ENSAPEG00000018018	DLC1 (ENSAPEG00000017998)	SLC44A1 (ENSAPEG00000017943)	spock3 (ENSAPEG00000017925)	ugt8 (ENSAPEG00000017903)	NDST4 (ENSAPEG00000017847)	ENSAPEG00000017836	PRSS12 (ENSAPEG00000017799)	mettl14 (ENSAPEG00000017730)
Clown anemonefish	MODERN SPECIES	2104																cdk2ap2 (ENSAOCG00000009221) #22	aip (ENSAOCG00000009196) #24	tmem134 (ENSAOCG00000009171) #25	serping1 (ENSAOCG00000009155)	doc2d (ENSAOCG00000009116)	ENSAOCG00000009087 #21	LONRF1 (ENSAOCG00000000552)	DLC1 (ENSAOCG00000009007)	SLC44A1 (ENSAOCG00000008902)	spock3 (ENSAOCG00000008841)
Spiny chromis	MODERN SPECIES	734									rbm47 (ENSAPOG00000011062)	ENSAPOG00000011003	ENSAPOG00000010990	cntf (ENSAPOG00000010986)	ENSAPOG00000010974	ankrd49 (ENSAPOG00000010948)	GPR83 (ENSAPOG00000010941)	cdk2ap2 (ENSAPOG00000010888) #22	aip (ENSAPOG00000010869) #24	tmem134 (ENSAPOG00000010860) #25	serping1 (ENSAPOG00000010811)	doc2d (ENSAPOG00000010766)	ENSAPOG00000010752
Bicolor damselfish	MODERN SPECIES	680									rbm47 (ENSSPAG00000001257)	ENSSPAG00000001363	ENSSPAG00000001375	cntf (ENSSPAG00000001384)	ENSSPAG00000001404	ankrd49 (ENSSPAG00000001421)	GPR83 (ENSSPAG00000001437)	cdk2ap2 (ENSSPAG00000001475) #22	aip (ENSSPAG00000001490) #24	tmem134 (ENSSPAG00000001503) #25	serping1 (ENSSPAG00000001526)	doc2d (ENSSPAG00000001564)	ENSSPAG00000001728 #21	ENSSPAG00000001741	DLC1 (ENSSPAG00000001832)
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00950000182934.a.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00950000182934.a.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00940000163443.f	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00950000182934.a.a
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00940000163443.f	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00950000182934.a.a
Burton s mouthbrooder	MODERN SPECIES	364	DRD5 (ENSHBUG00000003211)	itln3 (ENSHBUG00000003224)	slit2 (ENSHBUG00000003302)	ENSHBUG00000003333	zgc:113274 (ENSHBUG00000003349)	ncapg (ENSHBUG00000003365)	fam184b (ENSHBUG00000003404)	ENSHBUG00000003421	APBB2 (ENSHBUG00000003491)	rbm47 (ENSHBUG00000003520)	ENSHBUG00000003547	ENSHBUG00000003552	cntf (ENSHBUG00000003564)	ankrd49 (ENSHBUG00000003571)	GPR83 (ENSHBUG00000003574)	cdk2ap2 (ENSHBUG00000003587) #22	aip (ENSHBUG00000003618) #24	tmem134 (ENSHBUG00000003644) #25	serping1 (ENSHBUG00000003656)	doc2d (ENSHBUG00000003698)	ENSHBUG00000003710 #21	ENSHBUG00000003725	DLC1 (ENSHBUG00000003771)	SLC44A1 (ENSHBUG00000003799)	spock3 (ENSHBUG00000003806)	ugt8 (ENSHBUG00000003824)	NDST4 (ENSHBUG00000003882)	PRSS12 (ENSHBUG00000003927)	mettl14 (ENSHBUG00000003958)	ENSHBUG00000003967	ADRA1D (ENSHBUG00000003973)
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00940000163443.f	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00950000182934.a.a
P. nyererei	MODERN SPECIES	402	ENSPNYG00000023060	ENSPNYG00000023017	ENSPNYG00000022990	slit2 (ENSPNYG00000022956)	ENSPNYG00000022929	ncapg (ENSPNYG00000022907)	ENSPNYG00000022894	APBB2 (ENSPNYG00000022881)	rbm47 (ENSPNYG00000022868)	ZFP91 (ENSPNYG00000022860)	ENSPNYG00000022856	cntf (ENSPNYG00000022834)	ENSPNYG00000022827	ankrd49 (ENSPNYG00000022823)	GPR83 (ENSPNYG00000022812)	cdk2ap2 (ENSPNYG00000022803) #22	aip (ENSPNYG00000022794) #24	tmem134 (ENSPNYG00000022770) #25	serping1 (ENSPNYG00000022765)	doc2d (ENSPNYG00000022757)	ENSPNYG00000022753 #21	ENSPNYG00000022744	DLC1 (ENSPNYG00000022734)	SLC44A1 (ENSPNYG00000022715)	spock3 (ENSPNYG00000022704)	ugt8 (ENSPNYG00000022689)	NDST4 (ENSPNYG00000022676)	PRSS12 (ENSPNYG00000022664)	mettl14 (ENSPNYG00000022649)	ENSPNYG00000022635	ADRA1D (ENSPNYG00000022630)
Haplochromini_B	ANCESTRAL SPECIES	8	ENSGT00940000163443.f	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000000002.a.a.a.nb.b	ENSGT00940000157352.a	ENSGT00940000156979	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000003919	ENSGT00940000154336	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000173544	ENSGT00940000157174.c	ENSGT00940000157828	ENSGT00940000156545	ENSGT00940000157168	ENSGT00940000158131	ENSGT00550000075003	ENSGT00950000182934.a.a
Eastern happy	MODERN SPECIES	18	slit2 (ENSACLG00000016309)	ENSACLG00000016478	ncapg (ENSACLG00000016533)	fam184b (ENSACLG00000016570)	ENSACLG00000016600	APBB2 (ENSACLG00000016699)	ENSACLG00000016866	ENSACLG00000016873	rbm47 (ENSACLG00000016902)	ENSACLG00000016966	ENSACLG00000017011	cntf (ENSACLG00000017021)	ENSACLG00000017041	ankrd49 (ENSACLG00000017067)	GPR83 (ENSACLG00000017137)	cdk2ap2 (ENSACLG00000017169) #22	aip (ENSACLG00000017206) #24	tmem134 (ENSACLG00000017254) #25	serping1 (ENSACLG00000017311)	doc2d (ENSACLG00000017370)	ENSACLG00000017434 #21	ENSACLG00000017452	LONRF1 (ENSACLG00000017464)	DLC1 (ENSACLG00000017556)	ENSACLG00000017682	SLC44A1 (ENSACLG00000017703)	spock3 (ENSACLG00000017799)	ugt8 (ENSACLG00000017829)	NDST4 (ENSACLG00000017852)	PRSS12 (ENSACLG00000017961)	mettl14 (ENSACLG00000018000)
Zebra mbuna	MODERN SPECIES	1109	ENSMZEG00005023673	slit2 (ENSMZEG00005023668)	ENSMZEG00005023665	ncapg (ENSMZEG00005023664)	fam184b (ENSMZEG00005023663)	ENSMZEG00005023662	APBB2 (ENSMZEG00005023661)	rbm47 (ENSMZEG00005023659)	ENSMZEG00005023658	ENSMZEG00005023657	ENSMZEG00005023656	ENSMZEG00005023654	ankrd49 (ENSMZEG00005023653)	ENSMZEG00005023652	GPR83 (ENSMZEG00005023651)	cdk2ap2 (ENSMZEG00005023649) #22	aip (ENSMZEG00005023648) #24	tmem134 (ENSMZEG00005023647) #25	serping1 (ENSMZEG00005023646)	doc2d (ENSMZEG00005023644)	ENSMZEG00005023642 #21	LONRF1 (ENSMZEG00005023641)	DLC1 (ENSMZEG00005023639)	SLC44A1 (ENSMZEG00005023637)	spock3 (ENSMZEG00005023636)	ugt8 (ENSMZEG00005023634)	NDST4 (ENSMZEG00005023633)	ENSMZEG00005023632	mettl14 (ENSMZEG00005023630)	ENSMZEG00005023627	ENSMZEG00005023626
Lyretail cichlid	MODERN SPECIES	301	ENSNBRG00000015579	ENSNBRG00000015474	slit2 (ENSNBRG00000015368)	ENSNBRG00000015325	ncapg (ENSNBRG00000015239)	ENSNBRG00000015218	ENSNBRG00000015168	APBB2 (ENSNBRG00000015113)	rbm47 (ENSNBRG00000015092)	ZFP91 (ENSNBRG00000015065)	ENSNBRG00000015060	cntf (ENSNBRG00000015046)	ankrd49 (ENSNBRG00000015034)	ENSNBRG00000015018	GPR83 (ENSNBRG00000014989)	cdk2ap2 (ENSNBRG00000014970) #22	aip (ENSNBRG00000014948) #24	tmem134 (ENSNBRG00000014928) #25	serping1 (ENSNBRG00000014904)	doc2d (ENSNBRG00000014876)	ENSNBRG00000014861 #21	ENSNBRG00000014845	DLC1 (ENSNBRG00000014789)	ENSNBRG00000014765	SLC44A1 (ENSNBRG00000014686)	spock3 (ENSNBRG00000014656)	ugt8 (ENSNBRG00000014639)	NDST4 (ENSNBRG00000014603)	PRSS12 (ENSNBRG00000014562)	mettl14 (ENSNBRG00000014523)	ENSNBRG00000014512
Nile tilapia	MODERN SPECIES	18	ENSONIG00000038606	ENSONIG00000009039	ENSONIG00000037398	ncapg (ENSONIG00000009042)	fam184b (ENSONIG00000022293)	ENSONIG00000033575	APBB2 (ENSONIG00000009051)	ENSONIG00000009058	rbm47 (ENSONIG00000009061)	ENSONIG00000009063	ENSONIG00000030288	ankrd49 (ENSONIG00000009065)	gpr83 (ENSONIG00000034729)	ENSONIG00000039586	ENSONIG00000034323	cdk2ap2 (ENSONIG00000042338) #22	aip (ENSONIG00000014625) #24	tmem134 (ENSONIG00000014624) #25	serping1 (ENSONIG00000014618)	doc2d (ENSONIG00000014615)	ENSONIG00000042853 #21	ENSONIG00000014612	DLC1 (ENSONIG00000014607)	SLC44A1 (ENSONIG00000014604)	spock3 (ENSONIG00000014601)	ugt8 (ENSONIG00000014598)	ENSONIG00000014591	PRSS12 (ENSONIG00000014590)	mettl14 (ENSONIG00000014586)	ENSONIG00000014584	ADRA1D (ENSONIG00000014583)
Midas cichlid	MODERN SPECIES	1804																cdk2ap2 (ENSACIG00000009813) #22	aip (ENSACIG00000009829) #24	tmem134 (ENSACIG00000009851) #25	serping1 (ENSACIG00000009869)	doc2d (ENSACIG00000009936)	ENSACIG00000010009 #21	ENSACIG00000010040	DLC1 (ENSACIG00000010095)	ENSACIG00000010136	SLC44A1 (ENSACIG00000010146)	spock3 (ENSACIG00000010185)	ugt8 (ENSACIG00000010230)	NDST4 (ENSACIG00000010252)	PRSS12 (ENSACIG00000010286)	mettl14 (ENSACIG00000010309)
Tiger tail seahorse	MODERN SPECIES	257	ENSHCOG00000000067	ENSHCOG00000002231	ENSHCOG00000002222	slit2 (ENSHCOG00000002208)	ENSHCOG00000002176	ncapg (ENSHCOG00000002168)	fam184b (ENSHCOG00000002151)	ENSHCOG00000002121	APBB2 (ENSHCOG00000002111)	rbm47 (ENSHCOG00000002074)	ENSHCOG00000002041	ZFP91 (ENSHCOG00000002035)	ENSHCOG00000002026	ankrd49 (ENSHCOG00000002022)	GPR83 (ENSHCOG00000002015)	cdk2ap2 (ENSHCOG00000002011) #22	aip (ENSHCOG00000002007) #24	tmem134 (ENSHCOG00000001994) #25	doc2d (ENSHCOG00000000063)	CABP2 (ENSHCOG00000001956) #21	ENSHCOG00000001947	tmem186 (ENSHCOG00000001938)	hmox2a (ENSHCOG00000001934)	cxcl12b (ENSHCOG00000001921)	xpnpep1 (ENSHCOG00000000061)	ENSHCOG00000001878	add3a (ENSHCOG00000001807)	ENSHCOG00000001774	mxi1 (ENSHCOG00000001769)	dusp5 (ENSHCOG00000001753)	smc3 (ENSHCOG00000001739)
Pinecone sodierfish	MODERN SPECIES		rhoh (ENSMMDG00005003292)	CHRNA9 (ENSMMDG00005003288)	ENSMMDG00005003283	ENSMMDG00005002689	ENSMMDG00005002615	slit2 (ENSMMDG00005002074)	ENSMMDG00005002032	ncapg (ENSMMDG00005001802)	APBB2 (ENSMMDG00005001523)	ENSMMDG00005001493	rbm47 (ENSMMDG00005001479)	ENSMMDG00005001465	ENSMMDG00005001463	ankrd49 (ENSMMDG00005001457)	GPR83 (ENSMMDG00005001454)	cdk2ap2 (ENSMMDG00005001450) #22	aip (ENSMMDG00005001446) #24	tmem134 (ENSMMDG00005001434) #25	serping1 (ENSMMDG00005001425)	doc2d (ENSMMDG00005001416)	ENSMMDG00005001412 #21	ENSMMDG00005001398	DLC1 (ENSMMDG00005001092)	ENSMMDG00005001087	SLC44A1 (ENSMMDG00005001082)	spock3 (ENSMMDG00005001078)	ugt8 (ENSMMDG00005001077)	NDST4 (ENSMMDG00005001034)	PRSS12 (ENSMMDG00005001027)	mettl14 (ENSMMDG00005001021)	ENSMMDG00005001016
Cod	MODERN SPECIES	16	ENSGMOG00000035376	ENSGMOG00000022935	ENSGMOG00000009754	ENSGMOG00000009669	ENSGMOG00000009712	ENSGMOG00000009717	ENSGMOG00000025548	nptxrb (ENSGMOG00000032042)	ENSGMOG00000028484	ENSGMOG00000009802	ENSGMOG00000014802	ENSGMOG00000014815	ENSGMOG00000035309	ENSGMOG00000031164	ENSGMOG00000018303	ENSGMOG00000013238 #22	ENSGMOG00000013226 #24	ENSGMOG00000013221 #25	serping1 (ENSGMOG00000013214)	doc2d (ENSGMOG00000003329)	ENSGMOG00000022364 #21	ENSGMOG00000002101	ENSGMOG00000002063	ENSGMOG00000033853	ENSGMOG00000003443	spock3 (ENSGMOG00000003415)	ugt8 (ENSGMOG00000003398)	ENSGMOG00000014106	ENSGMOG00000035505	ENSGMOG00000003953	mettl14 (ENSGMOG00000003923)
Protacanthopterygii	ANCESTRAL SPECIES	40	ENSGT00940000153745.b.e.a	ENSGT00390000001189.b.j #15	ENSGT00390000002596.b	ENSGT01000000214857	ENSGT00940000156393.a.b	ENSGT00540000073610.A	ENSGT00390000003919	ENSGT00940000154336	ENSGT01070000253822.D.a.h.b	ENSGT01070000253822.F	ENSGT01070000253822.D.b.v.a.b	ENSGT01070000253822.D.b.v.b	ENSGT01070000253822.G	ENSGT00940000180384	ENSGT01070000253822.D.b.v.a.a	ENSGT00940000160334 #22	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00940000180362	ENSGT00940000155062.a #30	ENSGT01100000263527.b.b.a.a.b	ENSGT00730000111690.B.g	ENSGT00520000055649.a	ENSGT00390000015948.a	ENSGT00390000017452	ENSGT00940000160184.c.b	ENSGT00530000063713.b.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	784											ENSGT01000000214857.e	ENSGT00940000156393.a.b.a	ENSGT00540000073610.A.d	ENSGT00940000172609	ENSGT00940000154336.pd.b	ENSGT00940000160334.s #22	ENSGT00390000001289.a.g #24	ENSGT00390000011766.f #25	ENSGT00940000159681.e	ENSGT00940000166345.j
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000160334.s.a #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000160334.s.a #22
Rainbow trout	MODERN SPECIES	10	frg1 (ENSOMYG00000008536)	ENSOMYG00000054698	asah1b (ENSOMYG00000008849)	pcm1 (ENSOMYG00000009041)	ENSOMYG00000009107	ENSOMYG00000009156	ENSOMYG00000009175	ENSOMYG00000009253 #15	tacr3l (ENSOMYG00000009204)	ENSOMYG00000009272	ENSOMYG00000067081	ENSOMYG00000070156	ENSOMYG00000058329	ENSOMYG00000010610	ENSOMYG00000064659	ENSOMYG00000072004 #22	ENSOMYG00000011672 #24	ENSOMYG00000011651 #25	ENSOMYG00000059190	serping1 (ENSOMYG00000011625)	doc2d (ENSOMYG00000011603)	ENSOMYG00000077883 #21	ENSOMYG00000055206	ENSOMYG00000007521	ENSOMYG00000061229	ENSOMYG00000010122 #30	ENSOMYG00000016570	ENSOMYG00000016555	ENSOMYG00000015868	mogs (ENSOMYG00000015792)	ENSOMYG00000015762
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00940000160334.s.a #22
Coho salmon	MODERN SPECIES	27	asah1b (ENSOKIG00005015635)	pcm1 (ENSOKIG00005015844)	ENSOKIG00005015955	ENSOKIG00005015958	ENSOKIG00005015980	ENSOKIG00005016006	ENSOKIG00005016010	tacr3l (ENSOKIG00005016023)	ENSOKIG00005016065	ACY3 (ENSOKIG00005016070) #15	cldnd1b (ENSOKIG00005016083)	ENSOKIG00005016092	ENSOKIG00005016103	ENSOKIG00005016121	GPR83 (ENSOKIG00005016218)	cdk2ap2 (ENSOKIG00005016226) #22	aip (ENSOKIG00005016244) #24	tmem134 (ENSOKIG00005016256) #25	serping1 (ENSOKIG00005016270)	doc2d (ENSOKIG00005016308)	LONRF1 (ENSOKIG00005016341)	RPS6KB2 (ENSOKIG00005016392) #30	ENSOKIG00005017183	patl1 (ENSOKIG00005017198)	ENSOKIG00005017262	ENSOKIG00005017303	mogs (ENSOKIG00005017826)	FBXO41 (ENSOKIG00005017837)	rnf24 (ENSOKIG00005017879)	smox (ENSOKIG00005017892)	ENSOKIG00005025927
Salmo	ANCESTRAL SPECIES	59	ENSGT01030000234601.o.g.a.a	ENSGT00940000173396	ENSGT00940000153745.b.e.a.c	ENSGT00390000001189.b.j.h #15	ENSGT00390000002596.b.k.a	ENSGT01000000214857.f.a	ENSGT01000000214857.f.b.a	ENSGT00940000154348.c.b.a.a.a.d.b	ENSGT00940000156393.a.b.b	ENSGT00540000073610.A.c	ENSGT00390000003919	ENSGT00940000154336.pd.a	ENSGT01070000253822.D.b.v.a.b	ENSGT00940000180384	ENSGT01070000253822.D.b.v.a.a	ENSGT00940000160334.s.a #22	ENSGT00390000001289.a.h #24	ENSGT00390000011766.e #25	ENSGT00940000159681.f.a	ENSGT00940000166345.i	ENSGT00940000159796.a.a.d #21	ENSGT00440000033329.a.a.b.m.a	ENSGT00940000180362	ENSGT00940000155062.a.m #30	ENSGT01050000244806.a.a.a.b.a	ENSGT01050000244806.a.a.a.a.a.b	ENSGT01050000244806.a.a.a.a.b	ENSGT00980000198730.a.b	ENSGT01050000244806.a.a.b.a	ENSGT00980000198730.b.b	ENSGT01030000234540.B.b
River trout	MODERN SPECIES	33	ENSSTUG00000048521	ENSSTUG00000048526	tacr3l (ENSSTUG00000048533)	ACY3 (ENSSTUG00000048543) #15	cldnd1b (ENSSTUG00000048556)	ENSSTUG00000048567	ENSSTUG00000048569	ENSSTUG00000012931	ENSSTUG00000012958	ENSSTUG00000012974	ankrd49 (ENSSTUG00000012977)	GPR83 (ENSSTUG00000012980)	ENSSTUG00000012990	ENSSTUG00000013101	ENSSTUG00000013138	cdk2ap2 (ENSSTUG00000013144) #22	aip (ENSSTUG00000013160) #24	tmem134 (ENSSTUG00000013182) #25	serping1 (ENSSTUG00000013203)	doc2d (ENSSTUG00000013241)	ENSSTUG00000013309 #21	ENSSTUG00000013327	ENSSTUG00000013340	RPS6KB2 (ENSSTUG00000013358) #30	ENSSTUG00000013851	ENSSTUG00000013860	ENSSTUG00000013888	ENSSTUG00000013904	ENSSTUG00000013915	ENSSTUG00000013947	ENSSTUG00000013985
Atlantic salmon	MODERN SPECIES	23	ENSSSAG00000107971	ENSSSAG00000111240	ENSSSAG00000063678	tacr3l (ENSSSAG00000063695)	acy3 (ENSSSAG00000063716) #15	cldnd1b (ENSSSAG00000063722)	ENSSSAG00000118225	ENSSSAG00000110257	ENSSSAG00000095656	ENSSSAG00000094036	ENSSSAG00000096879	ENSSSAG00000093695	ENSSSAG00000090418	ENSSSAG00000118802	ENSSSAG00000063815	ENSSSAG00000063865 #22	ENSSSAG00000086675	aip (ENSSSAG00000063862) #24	ENSSSAG00000063873 #25	serping1 (ENSSSAG00000041306)	doc2d (ENSSSAG00000041354)	ENSSSAG00000041457 #21	ENSSSAG00000085583	ENSSSAG00000063939	ENSSSAG00000063963 #30	ENSSSAG00000093559	ENSSSAG00000097384	ENSSSAG00000015333	ENSSSAG00000106001	ENSSSAG00000114375	ENSSSAG00000105041
Salmoninae_a	ANCESTRAL SPECIES	84	ENSGT00390000004552.i.a	ENSGT00530000063548.B.c	ENSGT00390000006641.i.b	ENSGT01100000263533.b.b.b.a.b.b.b.b.b.a.b.a	ENSGT00940000156164.a.a	ENSGT00390000017281.b	ENSGT00980000201781	ENSGT00940000153745.b.e.a.d	ENSGT00390000001189.b.j.g #15	ENSGT00390000002596.b.k.b	ENSGT01000000214857.e	ENSGT00940000156393.a.b.a	ENSGT00540000073610.A.d	ENSGT00940000172609	ENSGT00940000154336.pd.b	ENSGT00940000160334.s.b #22	ENSGT00390000001289.a.g #24	ENSGT00390000011766.f #25	ENSGT00940000159681.e	ENSGT00940000166345.j
Oncorhynchus	ANCESTRAL SPECIES	6	ENSGT00940000157733.a.b.h	ENSGT00390000004552.i.a	ENSGT00530000063548.B.c	ENSGT00390000006641.i.b	ENSGT01100000263533.b.b.b.a.b.b.b.b.b.a.b.a	ENSGT00940000156164.a.a	ENSGT00390000017281.b	ENSGT00980000201781	ENSGT00940000153745.b.e.a.d	ENSGT00390000001189.b.j.g #15	ENSGT00390000002596.b.k.b	ENSGT01000000214857.e	ENSGT00940000156393.a.b.a	ENSGT00540000073610.A.d	ENSGT00940000154336.pd.b	ENSGT00940000160334.s.b #22	ENSGT00390000001289.a.g #24	ENSGT00390000011766.f #25	ENSGT00940000159681.e	ENSGT00940000166345.j	ENSGT00940000159796.a.a.f #21	ENSGT00440000033329.a.a.b.m.b	ENSGT00940000155062.a.n #30	ENSGT00730000111690.B.g.c	ENSGT00520000055649.a.a	ENSGT00940000166931.e.b	ENSGT00390000015948.a.e	ENSGT00390000017452.b	ENSGT00940000160184.c.b.b	ENSGT00530000063713.b.a.p	ENSGT00940000159443.g.a
Oncorhynchus_a	ANCESTRAL SPECIES	10	ENSGT00940000157733.a.b.h	ENSGT00390000004552.i.a	ENSGT00530000063548.B.c	ENSGT00390000006641.i.b	ENSGT01100000263533.b.b.b.a.b.b.b.b.b.a.b.a	ENSGT00940000156164.a.a	ENSGT00390000017281.b	ENSGT00980000201781	ENSGT00940000153745.b.e.a.d	ENSGT00390000001189.b.j.g #15	ENSGT00390000002596.b.k.b	ENSGT01000000214857.e	ENSGT00940000156393.a.b.a	ENSGT00540000073610.A.d	ENSGT00940000154336.pd.b	ENSGT00940000160334.s.b #22	ENSGT00390000001289.a.g #24	ENSGT00390000011766.f #25	ENSGT00940000159681.e	ENSGT00940000166345.j	ENSGT00940000159796.a.a.f #21	ENSGT00440000033329.a.a.b.m.b	ENSGT00940000155062.a.n #30	ENSGT00730000111690.B.g.c	ENSGT00520000055649.a.a	ENSGT00940000166931.e.b	ENSGT00390000015948.a.e	ENSGT00390000017452.b	ENSGT00940000160184.c.b.b	ENSGT00530000063713.b.a.p	ENSGT00940000159443.g.a
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2	mtnr1aa (ENSOTSG00005001370)	fat1a (ENSOTSG00005001394)	ENSOTSG00005001542	frg1 (ENSOTSG00005001546)	asah1b (ENSOTSG00005001550)	pcm1 (ENSOTSG00005001714)	ENSOTSG00005001757	osbp (ENSOTSG00005001778)	ccdc86 (ENSOTSG00005001805)	ACY3 (ENSOTSG00005001822) #15	tacr3l (ENSOTSG00005001838)	cldnd1b (ENSOTSG00005001844)	ENSOTSG00005001847	ENSOTSG00005001855	GPR83 (ENSOTSG00005001862)	cdk2ap2 (ENSOTSG00005001875) #22	aip (ENSOTSG00005001890) #24	tmem134 (ENSOTSG00005001894) #25	serping1 (ENSOTSG00005001901)	doc2d (ENSOTSG00005001907)	ENSOTSG00005001915 #21	ENSOTSG00005001919	ENSOTSG00005001924	RPS6KB2 (ENSOTSG00005001961) #30	patl1 (ENSOTSG00005003681)	pdcd4a (ENSOTSG00005003692)	ENSOTSG00005005496	ENSOTSG00005005497	FBXO41 (ENSOTSG00005005498)	rnf24 (ENSOTSG00005005499)	smox (ENSOTSG00005005501)
Chinook salmon	MODERN SPECIES	66	slc31a2 (ENSOTSG00005025705)	niban2a (ENSOTSG00005025395)	stxbp1a (ENSOTSG00005025323)	ENSOTSG00005025315	ENSOTSG00005025314	WHRN (ENSOTSG00005024995)	MAN1B1 (ENSOTSG00005024819)	CACNA1B (ENSOTSG00005021787)	ehmt1b (ENSOTSG00005021006)	rtknb (ENSOTSG00005021005)	ENSOTSG00005021004	ENSOTSG00005021003	ENSOTSG00005021001	cntf (ENSOTSG00005021000)	GPR83 (ENSOTSG00005020999)	cdk2ap2 (ENSOTSG00005020998) #22	aip (ENSOTSG00005020997) #24	tmem134 (ENSOTSG00005020996) #25	serping1 (ENSOTSG00005020995)	doc2d (ENSOTSG00005020994)	ENSOTSG00005020993	ENSOTSG00005020992	RPS6KB2 (ENSOTSG00005020990) #30	patl1 (ENSOTSG00005020988)	pdcd4a (ENSOTSG00005019518)	ENSOTSG00005019515	ENSOTSG00005019514	FBXO41 (ENSOTSG00005019513)	rnf24 (ENSOTSG00005019512)	smox (ENSOTSG00005019511)	ENSOTSG00005019510
Salmo	ANCESTRAL SPECIES	82		ENSGT00940000157733.a.b.h	ENSGT00390000004552.i.a	ENSGT00530000063548.B.c	ENSGT00390000006641.i.b	ENSGT01100000263533.b.b.b.a.b.b.b.b.b.a.b.a	ENSGT00940000156164.a.a	ENSGT00940000153745.b.e.a.d	ENSGT00390000001189.b.j.g #15	ENSGT00390000002596.b.k.b	ENSGT01000000214857.e	ENSGT00940000156393.a.b.a	ENSGT00540000073610.A.d	ENSGT00940000172609	ENSGT00940000154336.pd.b	ENSGT00940000160334.s.b #22	ENSGT00390000001289.a.g #24	ENSGT00390000011766.f #25	ENSGT00940000159681.e	ENSGT00940000166345.j	ENSGT00940000159796.a.a.c #21	ENSGT00440000033329.a.a.b.m.b	ENSGT00940000155062.a.n #30	ENSGT00520000055649.a.a	ENSGT00390000015948.a.e	ENSGT00390000017452.b	ENSGT00940000160184.c.b.b	ENSGT00530000063713.b.a.p	ENSGT00940000159443.h	ENSGT00940000157511.k	ENSGT00950000182934.a.a.g
Atlantic salmon	MODERN SPECIES	27	ENSSSAG00000114118	pcm1 (ENSSSAG00000038988)	ENSSSAG00000040908	ENSSSAG00000040927	ENSSSAG00000040952	ENSSSAG00000105233	ENSSSAG00000083627	tacr3l (ENSSSAG00000095583)	ENSSSAG00000041089 #15	cldnd1b (ENSSSAG00000089615)	ENSSSAG00000102183	ENSSSAG00000041120	ENSSSAG00000041148	ENSSSAG00000041156	ENSSSAG00000106519	ENSSSAG00000041260 #22	ENSSSAG00000041284 #24	ENSSSAG00000041290 #25	serping1 (ENSSSAG00000063885)	doc2d (ENSSSAG00000063929)	ENSSSAG00000100733 #21	ENSSSAG00000041511	ENSSSAG00000041617 #30	ENSSSAG00000042856	ENSSSAG00000043053	mogs (ENSSSAG00000064563)	ENSSSAG00000046984	ENSSSAG00000047010	ENSSSAG00000105176	RNF24 (ENSSSAG00000095342)	smox (ENSSSAG00000064759)
River trout	MODERN SPECIES	2	frg1 (ENSSTUG00000032688)	asah1b (ENSSTUG00000031735)	pcm1 (ENSSTUG00000031314)	ENSSTUG00000031288	osbp (ENSSTUG00000031231)	ccdc86 (ENSSTUG00000031219)	tacr3l (ENSSTUG00000031201)	ACY3 (ENSSTUG00000031191) #15	cldnd1b (ENSSTUG00000031183)	ENSSTUG00000031177	ENSSTUG00000031173	ENSSTUG00000031155	ENSSTUG00000031149	ENSSTUG00000031142	GPR83 (ENSSTUG00000031138)	cdk2ap2 (ENSSTUG00000031121) #22	aip (ENSSTUG00000031104) #24	tmem134 (ENSSTUG00000031098) #25	serping1 (ENSSTUG00000031094)	doc2d (ENSSTUG00000031080)	ENSSTUG00000047334 #21	ENSSTUG00000047328	RPS6KB2 (ENSSTUG00000047181) #30	ENSSTUG00000047168	ENSSTUG00000047161	ENSSTUG00000047157	patl1 (ENSSTUG00000047084)	ENSSTUG00000047081	pdcd4a (ENSSTUG00000046821)	mogs (ENSSTUG00000046788)	FBXO41 (ENSSTUG00000046742)
Huchen	MODERN SPECIES	1330							ENSHHUG00000017952	cntf (ENSHHUG00000017949)	ankrd49 (ENSHHUG00000017944)	GPR83 (ENSHHUG00000017938)	ENSHHUG00000017928	ENSHHUG00000017918	ENSHHUG00000017899	ENSHHUG00000017892	ENSHHUG00000017873	cdk2ap2 (ENSHHUG00000017832) #22	aip (ENSHHUG00000017798) #24	tmem134 (ENSHHUG00000017777) #25	serping1 (ENSHHUG00000017754)	doc2d (ENSHHUG00000017723)
Salmoninae	ANCESTRAL SPECIES	66	ENSGT01040000240400.c.b.b.a.a.b.b	ENSGT00940000167415.d	ENSGT01040000240385.A.a.b.b.e.a	ENSGT01040000240400.c.b.b.b.a.b	ENSGT01040000240400.c.b.b.b.a.a	ENSGT01040000240385.H.g.e.a	ENSGT01070000253822.D.a.h.b.b	ENSGT01070000253822.D.a.h.b.a	ENSGT01070000253822.F	ENSGT01070000253822.D.b.v.a.b	ENSGT01070000253822.D.b.v.b	ENSGT01070000253822.G	ENSGT00390000019377.a.a.b.j	ENSGT00940000180384	ENSGT01070000253822.D.b.v.a.a	ENSGT00940000160334.t #22	ENSGT00390000001289.a.h #24	ENSGT00390000011766.e #25	ENSGT00940000159681.f.b.a.a	ENSGT00940000166345.i	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b	ENSGT00940000155062.a.n #30	ENSGT00520000055649.a.a	ENSGT00390000015948.a.e	ENSGT00390000017452.b	ENSGT00940000160184.c.b.b	ENSGT00940000180362	ENSGT00940000155062.a.m #30	ENSGT01050000244806.a.a.a.b	ENSGT01050000244806.a.a.a.a
Salmoninae_a	ANCESTRAL SPECIES	54	ENSGT00940000163989.a.a.x	ENSGT00940000173396	ENSGT00940000153745.b.e.a.c	ENSGT00390000001189.b.j.h #15	ENSGT00390000002596.b.k.a	ENSGT01000000214857.f.a	ENSGT00940000156393.a.b.b	ENSGT00540000073610.A.c	ENSGT00390000003919	ENSGT00940000154336.pd.a	ENSGT01040000240400.d	ENSGT01070000253822.F	ENSGT01070000253822.D.b.v.a.b	ENSGT00940000180384	ENSGT01070000253822.D.b.v.a.a	ENSGT00940000160334.t #22	ENSGT00390000001289.a.h #24	ENSGT00390000011766.e #25	ENSGT00940000159681.f.b.a.a	ENSGT00940000166345.i	ENSGT00940000159796.a.a #21	ENSGT00440000033329.a.a.b.m.b	ENSGT00940000155062.a.n #30	ENSGT00440000033329.a.a.b.m.a	ENSGT00940000180362	ENSGT00940000155062.a.m #30	ENSGT01050000244806.a.a.a.b	ENSGT01050000244806.a.a.a.a.b	ENSGT00980000198730.a.b	ENSGT01050000244806.a.a.b.a	ENSGT00980000198730.b.b
Oncorhynchus	ANCESTRAL SPECIES	52	ENSGT01030000234601.o.e.b	ENSGT00940000153745.b.e.a.c	ENSGT00390000001189.b.j.h #15	ENSGT00390000002596.b.k.a	ENSGT01000000214857.f.a	ENSGT01000000214857.f.b.b	ENSGT00940000156393.a.b.b	ENSGT00540000073610.A.c	ENSGT00390000003919	ENSGT00940000154336.pd.a	ENSGT01040000240400.d	ENSGT01070000253822.F	ENSGT01070000253822.D.b.v.a.b	ENSGT00940000180384	ENSGT01070000253822.D.b.v.a.a	ENSGT00940000160334.t #22	ENSGT00390000001289.a.h #24	ENSGT00390000011766.e #25	ENSGT00940000159681.f.b.a.a	ENSGT00940000166345.i	ENSGT00940000159796.a.a.e #21	ENSGT00440000033329.a.a.b.m.a	ENSGT00940000180362	ENSGT00940000155062.a.m #30	ENSGT01050000244806.a.a.a.b	ENSGT01050000244806.a.a.a.a.b	ENSGT01050000244806.a.a.b.a	ENSGT00980000198730.a.b.a	ENSGT01030000234601.o.f	ENSGT01020000230338.a.b.b.a.a.a.b.a.b.a.b.i.a	ENSGT01020000230338.a.b.b.a.a.a.b.a.b.a.b.i.b
Rainbow trout	MODERN SPECIES	1	ENSOMYG00000010670 #15	cldnd1b (ENSOMYG00000010656)	ENSOMYG00000009288	ENSOMYG00000056580	ENSOMYG00000010650	ENSOMYG00000060008	ENSOMYG00000070345	ENSOMYG00000070284	ENSOMYG00000010626	ENSOMYG00000061354	ENSOMYG00000010618	ENSOMYG00000010607	ENSOMYG00000010516	ENSOMYG00000010441	ENSOMYG00000010305	ENSOMYG00000010235 #22	ENSOMYG00000010208 #24	ENSOMYG00000059054 #25	serping1 (ENSOMYG00000010083)	serping1 (ENSOMYG00000076828)	doc2d (ENSOMYG00000010048)	ENSOMYG00000061139	ENSOMYG00000075864 #21	ENSOMYG00000059678	ENSOMYG00000010036	ENSOMYG00000074207	ENSOMYG00000009955 #30	ENSOMYG00000009605	ENSOMYG00000069994	ENSOMYG00000057181	ENSOMYG00000047849
Oncorhynchus_a	ANCESTRAL SPECIES	52	ENSGT01030000234601.o.e.b	ENSGT00940000153745.b.e.a.c	ENSGT00390000001189.b.j.h #15	ENSGT00390000002596.b.k.a	ENSGT01000000214857.f.a	ENSGT01000000214857.f.b.b	ENSGT00940000156393.a.b.b	ENSGT00540000073610.A.c	ENSGT00390000003919	ENSGT00940000154336.pd.a	ENSGT01040000240400.d	ENSGT01070000253822.F	ENSGT01070000253822.D.b.v.a.b	ENSGT00940000180384	ENSGT01070000253822.D.b.v.a.a	ENSGT00940000160334.t #22	ENSGT00390000001289.a.h #24	ENSGT00390000011766.e #25	ENSGT00940000159681.f.b.a.a	ENSGT00940000166345.i	ENSGT00940000159796.a.a.e #21	ENSGT00440000033329.a.a.b.m.a	ENSGT00940000180362	ENSGT00940000155062.a.m #30	ENSGT01050000244806.a.a.a.b	ENSGT01050000244806.a.a.a.a.b	ENSGT01050000244806.a.a.b.a	ENSGT00980000198730.a.b.a	ENSGT01030000234540.B.b.w	ENSGT01030000234601.o.f	ENSGT01020000230338.a.b.b.a.a.a.b.a.b.a.b.i.b
Chinook salmon	MODERN SPECIES	27	ENSOTSG00005003317	ENSOTSG00005003294	ENSOTSG00005003291	ENSOTSG00005003285	ENSOTSG00005003280	ENSOTSG00005003279	tacr3l (ENSOTSG00005003276)	ACY3 (ENSOTSG00005003272) #15	cldnd1b (ENSOTSG00005003192)	ENSOTSG00005003107	ENSOTSG00005003103	ENSOTSG00005002803	ENSOTSG00005002792	ENSOTSG00005002683	ENSOTSG00005023496	cdk2ap2 (ENSOTSG00005023495) #22	aip (ENSOTSG00005023494) #24	tmem134 (ENSOTSG00005023492) #25	serping1 (ENSOTSG00005023487)	ENSOTSG00005023484	doc2d (ENSOTSG00005023475)	ENSOTSG00005023472 #21	ENSOTSG00005023470	ENSOTSG00005023471	ENSOTSG00005023469	RPS6KB2 (ENSOTSG00005023467) #30	ENSOTSG00005023464	ENSOTSG00005023440	ENSOTSG00005023433	ENSOTSG00005023430	ENSOTSG00005023428
Coho salmon	MODERN SPECIES	3	ENSOKIG00005024136	ENSOKIG00005024125	ENSOKIG00005024107	tacr3l (ENSOKIG00005023944)	ACY3 (ENSOKIG00005023912) #15	cldnd1b (ENSOKIG00005023893)	ENSOKIG00005023866	ENSOKIG00005023841	ENSOKIG00005023805	ENSOKIG00005023786	ENSOKIG00005023774	ankrd49 (ENSOKIG00005023772)	GPR83 (ENSOKIG00005023758)	ENSOKIG00005023748	ENSOKIG00005023659	CDK2AP2 (ENSOKIG00005023637) #22	AIP (ENSOKIG00005023623) #24	ENSOKIG00005023608 #25	serping1 (ENSOKIG00005023514)	doc2d (ENSOKIG00005023418)	ENSOKIG00005023395 #21	ENSOKIG00005023381	ENSOKIG00005023373	RPS6KB2 (ENSOKIG00005023179) #30	ENSOKIG00005023150	ENSOKIG00005023132	ENSOKIG00005023106	ENSOKIG00005023026	ENSOKIG00005023011	ENSOKIG00005023006	ENSOKIG00005022995
Huchen	MODERN SPECIES	4260															GPR83 (ENSHHUG00000045511)	cdk2ap2 (ENSHHUG00000045489) #22	aip (ENSHHUG00000045467) #24	ENSHHUG00000045461	tmem134 (ENSHHUG00000045448) #25	ENSHHUG00000045442	ENSHHUG00000045433
Northern pike	MODERN SPECIES	24	ENSELUG00000022783	ENSELUG00000022798	ENSELUG00000022812	tacr3l (ENSELUG00000022845)	acy3.2 (ENSELUG00000001253) #15	cldnd1b (ENSELUG00000029266)	ENSELUG00000033505	ENSELUG00000022897	ENSELUG00000022916	ankrd49 (ENSELUG00000026478)	GPR83 (ENSELUG00000022975)	ENSELUG00000032300	ENSELUG00000023021	ENSELUG00000030691	ENSELUG00000028280	cdk2ap2 (ENSELUG00000030693) #22	aip (ENSELUG00000023123) #24	tmem134 (ENSELUG00000023207) #25	serping1 (ENSELUG00000023225)	doc2d (ENSELUG00000023240)	ENSELUG00000026595	CABP2 (ENSELUG00000028776) #21	LONRF1 (ENSELUG00000023387)	ENSELUG00000023310	RPS6KB2 (ENSELUG00000001422) #30	ENSELUG00000032247	ENSELUG00000023838	ENSELUG00000023812	ENSELUG00000023936	ENSELUG00000027687	ENSELUG00000023784
Reedfish	MODERN SPECIES	1	ENSECRG00000014336	ENSECRG00000014345	ENSECRG00000014366	ENSECRG00000014388	ENSECRG00000014405	soat1 (ENSECRG00000014431)	abl2 (ENSECRG00000014465)	tor3a (ENSECRG00000014497)	FAM163A (ENSECRG00000014522)	ENSECRG00000014566	nphs2 (ENSECRG00000014610)	ENSECRG00000014639	ENSECRG00000009138	ndufv1 (ENSECRG00000009156) #19	ENSECRG00000009182 #21	cdk2ap2 (ENSECRG00000009190) #22	aip (ENSECRG00000009201) #24	TMEM134 (ENSECRG00000009212) #25	ENSECRG00000009219	ENSECRG00000009231	ENSECRG00000009263	LRRC55 (ENSECRG00000009280)	nudt8 (ENSECRG00000009288)	aplnr2 (ENSECRG00000009293)	ENSECRG00000009297	ENSECRG00000009313 #15	acy3.2 (ENSECRG00000009324) #15	crybb1l2 (ENSECRG00000009357)	cryba1l2 (ENSECRG00000009547)	unc93b1 (ENSECRG00000009605) #12	cabp2a (ENSECRG00000009625)