Amniota	ANCESTRAL SPECIES	81											ENSGT00530000063359.B #12	ENSGT00940000163889 #16	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00990000203796	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Mammalia	ANCESTRAL SPECIES	83	ENSGT01060000248595.b.a.b.a	ENSGT00940000161379	ENSGT00390000009663	ENSGT00390000009899.a.d	ENSGT00940000156574.C	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00530000063359.B #12	ENSGT00940000155904 #13	ENSGT00940000168541	ENSGT00940000163889 #16	ENSGT00390000010641 #19	ENSGT00940000163435	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00990000203796	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36
Theria	ANCESTRAL SPECIES	8	ENSGT01060000248595.b.a.b.a	ENSGT00940000161379	ENSGT00390000009663	ENSGT00390000009899.a.d	ENSGT00940000156574.C	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00530000063359.B #12	ENSGT00940000155904 #13	ENSGT00940000168541	ENSGT00940000163889 #16	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Eutheria	ANCESTRAL SPECIES	3	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT01100000264273	ENSGT00940000163374	ENSGT00940000163889 #16	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT01100000264273	ENSGT00940000163374	ENSGT00940000163889 #16	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Primates	ANCESTRAL SPECIES		ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Haplorrhini	ANCESTRAL SPECIES		ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Simiiformes	ANCESTRAL SPECIES		ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000163889 #16	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00390000009529.b.a	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000163889 #16	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000163889 #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000163889 #16	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Macaca	ANCESTRAL SPECIES	2	ENSGT00390000009529.b.a	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000163889 #16	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00390000009529.b.a	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000163889 #16	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00940000173013	ENSGT00390000005096 #36
Rhesus	MODERN SPECIES	5	KMT5B (ENSMMUG00000014237) #7	CHKA (ENSMMUG00000023192) #8	TCIRG1 (ENSMMUG00000023190) #9	NDUFS8 (ENSMMUG00000023189) #10	ALDH3B1 (ENSMMUG00000023188) #11	UNC93B1 (ENSMMUG00000023184) #12	ALDH3B2 (ENSMMUG00000018533) #13	ACY3 (ENSMMUG00000039824) #14	TBX10 (ENSMMUG00000056105) #15	NUDT8 (ENSMMUG00000042611) #16	ENSMMUG00000062171 #17	DOC2G (ENSMMUG00000018527) #18	NDUFV1 (ENSMMUG00000018526) #19	GSTP1 (ENSMMUG00000018524) #20	CABP2 (ENSMMUG00000011828) #21	CDK2AP2 (ENSMMUG00000057395) #22	PITPNM1 (ENSMMUG00000011821) #23	AIP (ENSMMUG00000011817) #24	TMEM134 (ENSMMUG00000005493) #25	CABP4 (ENSMMUG00000052347) #26	GPR152 (ENSMMUG00000005489) #27	ENSMMUG00000053378 #28	CORO1B (ENSMMUG00000005488) #29	PTPRCAP (ENSMMUG00000005486) #30	RPS6KB2 (ENSMMUG00000005483) #31	CARNS1 (ENSMMUG00000005480) #32	TBC1D10C (ENSMMUG00000017280) #33	PPP1CA (ENSMMUG00000017278) #34	RAD9A (ENSMMUG00000017275) #35	POLD4 (ENSMMUG00000004523) #36	SSH3 (ENSMMUG00000015932) #37
Crab-eating macaque	MODERN SPECIES	5	ENSMFAG00000008768	KMT5B (ENSMFAG00000030851) #7	CHKA (ENSMFAG00000032927) #8	TCIRG1 (ENSMFAG00000030577) #9	NDUFS8 (ENSMFAG00000035405) #10	ENSMFAG00000001507 #11	UNC93B1 (ENSMFAG00000043671) #12	ALDH3B2 (ENSMFAG00000044295) #13	ACY3 (ENSMFAG00000046339) #14	TBX10 (ENSMFAG00000007056) #15	NDUFV1 (ENSMFAG00000038730) #19	ENSMFAG00000061940	ENSMFAG00000051463 #16	GSTP1 (ENSMFAG00000032564) #20	CABP2 (ENSMFAG00000003212) #21	CDK2AP2 (ENSMFAG00000033158) #22	PITPNM1 (ENSMFAG00000046144) #23	AIP (ENSMFAG00000034062) #24	TMEM134 (ENSMFAG00000030408) #25	ENSMFAG00000056898	CABP4 (ENSMFAG00000038440) #26	CORO1B (ENSMFAG00000037995) #29	RPS6KB2 (ENSMFAG00000031507) #31	ENSMFAG00000051490	CARNS1 (ENSMFAG00000046293) #32	TBC1D10C (ENSMFAG00000045050) #33	PPP1CA (ENSMFAG00000001854) #34	RAD9A (ENSMFAG00000041314) #35	ENSMFAG00000053215	CLCF1 (ENSMFAG00000039712)	ENSMFAG00000045971
Pig-tailed macaque	MODERN SPECIES	433	ENSMNEG00000035330	KMT5B (ENSMNEG00000028922) #7	CHKA (ENSMNEG00000041615) #8	TCIRG1 (ENSMNEG00000044486) #9	NDUFS8 (ENSMNEG00000029160) #10	ENSMNEG00000044884 #11	UNC93B1 (ENSMNEG00000042693) #12	ALDH3B2 (ENSMNEG00000042334) #13	ACY3 (ENSMNEG00000041493) #14	TBX10 (ENSMNEG00000032749) #15	NUDT8 (ENSMNEG00000041484) #16	ENSMNEG00000033340 #18	NDUFV1 (ENSMNEG00000041086) #19	GSTP1 (ENSMNEG00000044300) #20	CABP2 (ENSMNEG00000045390) #21	CDK2AP2 (ENSMNEG00000042636) #22	PITPNM1 (ENSMNEG00000043351) #23	AIP (ENSMNEG00000039995) #24	TMEM134 (ENSMNEG00000041551) #25	CABP4 (ENSMNEG00000032138) #26	GPR152 (ENSMNEG00000030403) #27	CORO1B (ENSMNEG00000044473) #29	PTPRCAP (ENSMNEG00000043708) #30	RPS6KB2 (ENSMNEG00000032247) #31	CARNS1 (ENSMNEG00000038393) #32	TBC1D10C (ENSMNEG00000031857) #33	PPP1CA (ENSMNEG00000042253) #34	CLCF1 (ENSMNEG00000034658)	POLD4 (ENSMNEG00000013342) #36	RAD9A (ENSMNEG00000043395) #35	SSH3 (ENSMNEG00000031930) #37
Cercopithecinae_b	ANCESTRAL SPECIES	16	ENSGT00940000153377.B.e	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000163889 #16	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Olive baboon	MODERN SPECIES	3	ENSPANG00000003110 #7	ENSPANG00000047861 #7	CHKA (ENSPANG00000015385) #8	TCIRG1 (ENSPANG00000012975) #9	ALDH3B1 (ENSPANG00000010862)	UNC93B1 (ENSPANG00000025891) #12	ENSPANG00000049723	ENSPANG00000046704 #13	ACY3 (ENSPANG00000024740) #14	TBX10 (ENSPANG00000006501) #15	NUDT8 (ENSPANG00000009837) #16	ENSPANG00000008595 #18	NDUFV1 (ENSPANG00000011236) #19	GSTP1 (ENSPANG00000004067) #20	CABP2 (ENSPANG00000026467) #21	CDK2AP2 (ENSPANG00000004749) #22	PITPNM1 (ENSPANG00000015330) #23	AIP (ENSPANG00000006615) #24	TMEM134 (ENSPANG00000007007) #25	CABP4 (ENSPANG00000011704) #26	GPR152 (ENSPANG00000012974) #27	CORO1B (ENSPANG00000015784) #29	PTPRCAP (ENSPANG00000004926) #30	RPS6KB2 (ENSPANG00000011196) #31	CARNS1 (ENSPANG00000011528) #32	TBC1D10C (ENSPANG00000006614) #33	PPP1CA (ENSPANG00000009836) #34	RAD9A (ENSPANG00000003109) #35	CLCF1 (ENSPANG00000022856)	POLD4 (ENSPANG00000007733) #36	SSH3 (ENSPANG00000023601) #37
Cercopithecinae_d	ANCESTRAL SPECIES	6	ENSGT00940000153377.B.e	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000163889 #16	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Drill	MODERN SPECIES	942	LRP5 (ENSMLEG00000011072)	ENSMLEG00000038166	KMT5B (ENSMLEG00000035508) #7	CHKA (ENSMLEG00000043175) #8	TCIRG1 (ENSMLEG00000010508) #9	NDUFS8 (ENSMLEG00000031739) #10	ALDH3B1 (ENSMLEG00000025945)	UNC93B1 (ENSMLEG00000037140) #12	ALDH3B2 (ENSMLEG00000028402) #13	ACY3 (ENSMLEG00000031989) #14	ENSMLEG00000030742	NUDT8 (ENSMLEG00000008171) #16	NDUFV1 (ENSMLEG00000041364) #19	GSTP1 (ENSMLEG00000007972) #20	CABP2 (ENSMLEG00000010923) #21	CDK2AP2 (ENSMLEG00000040207) #22	PITPNM1 (ENSMLEG00000030151) #23	AIP (ENSMLEG00000031372) #24	TMEM134 (ENSMLEG00000027441) #25	CABP4 (ENSMLEG00000030918) #26	GPR152 (ENSMLEG00000019825) #27	CORO1B (ENSMLEG00000031164) #29	PTPRCAP (ENSMLEG00000032460) #30	RPS6KB2 (ENSMLEG00000028690) #31	CARNS1 (ENSMLEG00000041533) #32	TBC1D10C (ENSMLEG00000043951) #33	PPP1CA (ENSMLEG00000028349) #34	RAD9A (ENSMLEG00000033976) #35	CLCF1 (ENSMLEG00000000061)	POLD4 (ENSMLEG00000039964) #36	ENSMLEG00000024669
Sooty mangabey	MODERN SPECIES	518	ENSCATG00000042618	KMT5B (ENSCATG00000042964) #7	CHKA (ENSCATG00000041180) #8	TCIRG1 (ENSCATG00000031312) #9	NDUFS8 (ENSCATG00000042587) #10	ALDH3B1 (ENSCATG00000030949)	UNC93B1 (ENSCATG00000037367) #12	ALDH3B2 (ENSCATG00000015105) #13	ACY3 (ENSCATG00000030863) #14	TBX10 (ENSCATG00000029511) #15	NUDT8 (ENSCATG00000029910) #16	ENSCATG00000030569 #18	NDUFV1 (ENSCATG00000028405) #19	GSTP1 (ENSCATG00000032849) #20	CABP2 (ENSCATG00000029380) #21	CDK2AP2 (ENSCATG00000036893) #22	PITPNM1 (ENSCATG00000039132) #23	AIP (ENSCATG00000030555) #24	TMEM134 (ENSCATG00000041128) #25	CABP4 (ENSCATG00000038209) #26	CORO1B (ENSCATG00000039163) #29	PTPRCAP (ENSCATG00000041535) #30	RPS6KB2 (ENSCATG00000031028) #31	CARNS1 (ENSCATG00000032796) #32	TBC1D10C (ENSCATG00000035510) #33	PPP1CA (ENSCATG00000031120) #34	RAD9A (ENSCATG00000020148) #35	CLCF1 (ENSCATG00000041096)	POLD4 (ENSCATG00000035283) #36	SSH3 (ENSCATG00000039482) #37	ANKRD13D (ENSCATG00000030715)
Vervet Monkey	MODERN SPECIES		ENSCSAG00000008972	KMT5B (ENSCSAG00000008964) #7	CHKA (ENSCSAG00000008953) #8	TCIRG1 (ENSCSAG00000008911) #9	NDUFS8 (ENSCSAG00000008821) #10	ENSCSAG00000008797 #11	UNC93B1 (ENSCSAG00000008748) #12	ALDH3B2 (ENSCSAG00000008743) #13	ACY3 (ENSCSAG00000008735) #14	TBX10 (ENSCSAG00000008726) #15	ENSCSAG00000008710	ENSCSAG00000008700 #18	NDUFV1 (ENSCSAG00000008693) #19	GSTP1 (ENSCSAG00000008684) #20	CABP2 (ENSCSAG00000008676) #21	CDK2AP2 (ENSCSAG00000008667) #22	PITPNM1 (ENSCSAG00000008662) #23	AIP (ENSCSAG00000008652) #24	TMEM134 (ENSCSAG00000008641) #25	CABP4 (ENSCSAG00000008624) #26	GPR152 (ENSCSAG00000018962) #27	CORO1B (ENSCSAG00000008604) #29	PTPRCAP (ENSCSAG00000019165) #30	RPS6KB2 (ENSCSAG00000008598) #31	CARNS1 (ENSCSAG00000008580) #32	TBC1D10C (ENSCSAG00000008558) #33	PPP1CA (ENSCSAG00000008548) #34	RAD9A (ENSCSAG00000008542) #35	CLCF1 (ENSCSAG00000008530)	POLD4 (ENSCSAG00000008521) #36	SSH3 (ENSCSAG00000008510) #37
Rhinopithecus	ANCESTRAL SPECIES	1	ENSGT00390000009529.b.a	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000163889 #16	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Golden snub-nosed monkey	MODERN SPECIES	1279	C11orf24 (ENSRROG00000027402)	KMT5B (ENSRROG00000045691) #7	CHKA (ENSRROG00000016904) #8	TCIRG1 (ENSRROG00000035211) #9	NDUFS8 (ENSRROG00000035645) #10	ALDH3B1 (ENSRROG00000035472)	UNC93B1 (ENSRROG00000012536) #12	ALDH3B2 (ENSRROG00000030687) #13	ACY3 (ENSRROG00000039646) #14	TBX10 (ENSRROG00000039702) #15	NUDT8 (ENSRROG00000037097) #16	ENSRROG00000026586 #18	NDUFV1 (ENSRROG00000037664) #19	GSTP1 (ENSRROG00000027191) #20	CABP2 (ENSRROG00000037183) #21	CDK2AP2 (ENSRROG00000043366) #22	PITPNM1 (ENSRROG00000007043) #23	AIP (ENSRROG00000045104) #24	TMEM134 (ENSRROG00000040406) #25	CABP4 (ENSRROG00000039803) #26	CORO1B (ENSRROG00000039319) #29	PTPRCAP (ENSRROG00000015187) #30	RPS6KB2 (ENSRROG00000044662) #31	CARNS1 (ENSRROG00000005925) #32	TBC1D10C (ENSRROG00000019804) #33	PPP1CA (ENSRROG00000039846) #34	RAD9A (ENSRROG00000035222) #35	CLCF1 (ENSRROG00000045504)	POLD4 (ENSRROG00000037792) #36	SSH3 (ENSRROG00000036044) #37	ANKRD13D (ENSRROG00000041027)
Black snub-nosed monkey	MODERN SPECIES	1876	ENSRBIG00000037386	KMT5B (ENSRBIG00000037823) #7	CHKA (ENSRBIG00000024191) #8	TCIRG1 (ENSRBIG00000036654) #9	NDUFS8 (ENSRBIG00000026286) #10	ALDH3B1 (ENSRBIG00000031620)	UNC93B1 (ENSRBIG00000040314) #12	ALDH3B2 (ENSRBIG00000030727) #13	ACY3 (ENSRBIG00000001203) #14	TBX10 (ENSRBIG00000031114) #15	NUDT8 (ENSRBIG00000039414) #16	ENSRBIG00000031438 #18	NDUFV1 (ENSRBIG00000038931) #19	GSTP1 (ENSRBIG00000041246) #20	CABP2 (ENSRBIG00000042812) #21	CDK2AP2 (ENSRBIG00000010171) #22	PITPNM1 (ENSRBIG00000011676) #23	AIP (ENSRBIG00000036498) #24	TMEM134 (ENSRBIG00000030826) #25	CABP4 (ENSRBIG00000042584) #26	GPR152 (ENSRBIG00000041858) #27	CORO1B (ENSRBIG00000043610) #29	PTPRCAP (ENSRBIG00000044684) #30	RPS6KB2 (ENSRBIG00000036100) #31	CARNS1 (ENSRBIG00000040033) #32	TBC1D10C (ENSRBIG00000032877) #33	PPP1CA (ENSRBIG00000043947) #34	RAD9A (ENSRBIG00000032418) #35	CLCF1 (ENSRBIG00000029063)	POLD4 (ENSRBIG00000036506) #36	ENSRBIG00000029788
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000163889 #16	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Hominidae	ANCESTRAL SPECIES	1	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000163889 #16	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Orangutan	MODERN SPECIES	2	PPP6R3 (ENSPPYG00000002970)	LRP5 (ENSPPYG00000036218)	C11orf24 (ENSPPYG00000002972)	KMT5B (ENSPPYG00000002973) #7	CHKA (ENSPPYG00000002974) #8	NDUFS8 (ENSPPYG00000002976) #10	ALDH3B1 (ENSPPYG00000002977)	UNC93B1 (ENSPPYG00000020003) #12	ALDH3B2 (ENSPPYG00000038703) #13	ACY3 (ENSPPYG00000002980) #14	TBX10 (ENSPPYG00000002981) #15	NUDT8 (ENSPPYG00000029677) #16	NDUFV1 (ENSPPYG00000002983) #19	GSTP1 (ENSPPYG00000002985) #20	CABP2 (ENSPPYG00000002986) #21	CDK2AP2 (ENSPPYG00000002987) #22	PITPNM1 (ENSPPYG00000002988) #23	AIP (ENSPPYG00000002989) #24	TMEM134 (ENSPPYG00000004100) #25	CABP4 (ENSPPYG00000002990) #26	GPR152 (ENSPPYG00000002991) #27	CORO1B (ENSPPYG00000002992) #29	PTPRCAP (ENSPPYG00000037728) #30	RPS6KB2 (ENSPPYG00000002993) #31	CARNS1 (ENSPPYG00000029387) #32	TBC1D10C (ENSPPYG00000002994) #33	PPP1CA (ENSPPYG00000002995) #34	RAD9A (ENSPPYG00000002996) #35	CLCF1 (ENSPPYG00000036168)	ENSPPYG00000034141	SSH3 (ENSPPYG00000002998) #37
Homo/Pan/Gorilla group	DUPLICATION
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	8	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000163889 #16	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334.i #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a.b #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Gorilla	MODERN SPECIES	2	KMT5B (ENSGGOG00000004122) #7	TCIRG1 (ENSGGOG00000005005) #9	NDUFS8 (ENSGGOG00000005001) #10	ALDH3B1 (ENSGGOG00000004995)	ENSGGOG00000025959 #12	ENSGGOG00000003630	ENSGGOG00000038633	ALDH3B2 (ENSGGOG00000015729) #13	ACY3 (ENSGGOG00000011979) #14	TBX10 (ENSGGOG00000011961) #15	NUDT8 (ENSGGOG00000011953) #16	ENSGGOG00000023590 #18	NDUFV1 (ENSGGOG00000011943) #19	GSTP1 (ENSGGOG00000013849) #20	ENSGGOG00000010165 #21	CDK2AP2 (ENSGGOG00000010159) #22	PITPNM1 (ENSGGOG00000010148) #23	AIP (ENSGGOG00000010142) #24	TMEM134 (ENSGGOG00000042077) #25	CABP4 (ENSGGOG00000010025) #26	GPR152 (ENSGGOG00000010019) #27	CORO1B (ENSGGOG00000010013) #29	PTPRCAP (ENSGGOG00000010011) #30	RPS6KB2 (ENSGGOG00000009999) #31	CARNS1 (ENSGGOG00000009995) #32	TBC1D10C (ENSGGOG00000009988) #33	PPP1CA (ENSGGOG00000009981) #34	ENSGGOG00000039742 #35	RAD9A (ENSGGOG00000009974) #35	ENSGGOG00000008219	POLD4 (ENSGGOG00000016028) #36
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000163889 #16	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334.i #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a.b #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Human	MODERN SPECIES	2	LRP5 (ENSG00000162337)	C11orf24 (ENSG00000171067)	KMT5B (ENSG00000110066) #7	CHKA (ENSG00000110721) #8	TCIRG1 (ENSG00000110719) #9	NDUFS8 (ENSG00000110717) #10	ALDH3B1 (ENSG00000006534)	UNC93B1 (ENSG00000110057) #12	ALDH3B2 (ENSG00000132746) #13	ACY3 (ENSG00000132744) #14	TBX10 (ENSG00000167800) #15	NUDT8 (ENSG00000167799) #16	NDUFV1 (ENSG00000167792) #19	GSTP1 (ENSG00000084207) #20	CABP2 (ENSG00000167791) #21	CDK2AP2 (ENSG00000167797) #22	PITPNM1 (ENSG00000110697) #23	AIP (ENSG00000110711) #24	TMEM134 (ENSG00000172663) #25	CABP4 (ENSG00000175544) #26	GPR152 (ENSG00000175514) #27	CORO1B (ENSG00000172725) #29	PTPRCAP (ENSG00000213402) #30	RPS6KB2 (ENSG00000175634) #31	CARNS1 (ENSG00000172508) #32	TBC1D10C (ENSG00000175463) #33	PPP1CA (ENSG00000172531) #34	CLCF1 (ENSG00000175505)	ENSG00000256514	POLD4 (ENSG00000175482) #36	RAD9A (ENSG00000172613) #35
Pan	ANCESTRAL SPECIES	1	ENSGT00910000148520	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00390000005254.j	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000163889 #16	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334.i #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a.b #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Bonobo	MODERN SPECIES	2	KMT5B (ENSPPAG00000038672) #7	ENSPPAG00000036484	CHKA (ENSPPAG00000037771) #8	TCIRG1 (ENSPPAG00000030122) #9	NDUFS8 (ENSPPAG00000039231) #10	ALDH3B1 (ENSPPAG00000030155)	UNC93B1 (ENSPPAG00000031688) #12	ENSPPAG00000027946	ALDH3B2 (ENSPPAG00000032213) #13	ACY3 (ENSPPAG00000031478) #14	TBX10 (ENSPPAG00000030171) #15	NUDT8 (ENSPPAG00000043158) #16	NDUFV1 (ENSPPAG00000043544) #19	GSTP1 (ENSPPAG00000043169) #20	ENSPPAG00000043180 #21	CDK2AP2 (ENSPPAG00000043090) #22	PITPNM1 (ENSPPAG00000044125) #23	AIP (ENSPPAG00000026775) #24	TMEM134 (ENSPPAG00000038698) #25	CABP4 (ENSPPAG00000031081) #26	GPR152 (ENSPPAG00000008770) #27	CORO1B (ENSPPAG00000030008) #29	PTPRCAP (ENSPPAG00000044074) #30	RPS6KB2 (ENSPPAG00000006795) #31	CARNS1 (ENSPPAG00000032452) #32	TBC1D10C (ENSPPAG00000042701) #33	PPP1CA (ENSPPAG00000023894) #34	RAD9A (ENSPPAG00000031016) #35	ENSPPAG00000035536	POLD4 (ENSPPAG00000035704) #36	SSH3 (ENSPPAG00000016898) #37
Chimpanzee	MODERN SPECIES	2	ENSPTRG00000051044	CHKA (ENSPTRG00000003980) #8	TCIRG1 (ENSPTRG00000003979) #9	NDUFS8 (ENSPTRG00000003978) #10	ALDH3B1 (ENSPTRG00000051435)	UNC93B1 (ENSPTRG00000003975) #12	ENSPTRG00000044434	ALDH3B2 (ENSPTRG00000003974) #13	ACY3 (ENSPTRG00000003973) #14	TBX10 (ENSPTRG00000003972) #15	NUDT8 (ENSPTRG00000003971) #16	DOC2G (ENSPTRG00000052755) #18	NDUFV1 (ENSPTRG00000003969) #19	GSTP1 (ENSPTRG00000003968) #20	CABP2 (ENSPTRG00000003967) #21	CDK2AP2 (ENSPTRG00000003966) #22	PITPNM1 (ENSPTRG00000003965) #23	AIP (ENSPTRG00000003964) #24	TMEM134 (ENSPTRG00000003963) #25	CABP4 (ENSPTRG00000050164) #26	GPR152 (ENSPTRG00000003960) #27	CORO1B (ENSPTRG00000003959) #29	PTPRCAP (ENSPTRG00000033878) #30	RPS6KB2 (ENSPTRG00000003957) #31	CARNS1 (ENSPTRG00000028514) #32	TBC1D10C (ENSPTRG00000003954) #33	PPP1CA (ENSPTRG00000005449) #34	RAD9A (ENSPTRG00000044525) #35	CLCF1 (ENSPTRG00000047312)	POLD4 (ENSPTRG00000003950) #36	SSH3 (ENSPTRG00000003949) #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES																	ENSGT00940000160334.j #22
Homo/Pan group	ANCESTRAL SPECIES																	ENSGT00940000160334.j #22
Pan	ANCESTRAL SPECIES																	ENSGT00940000160334.j #22
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	11	ID1 (ENSPTRG00000013357)	ENSPTRG00000047072	ENSPTRG00000013356	REM1 (ENSPTRG00000013354)	DEFB124 (ENSPTRG00000013353)	DEFB123 (ENSPTRG00000013352)	DEFB121 (ENSPTRG00000030595)	DEFB119 (ENSPTRG00000013351)	DEFB118 (ENSPTRG00000045857)	DEFB116 (ENSPTRG00000032541)	ENSPTRG00000047609	DEFB115 (ENSPTRG00000033694)	ENSPTRG00000047765	ENSPTRG00000052363	ENSPTRG00000013348	ENSPTRG00000046147 #22	ENSPTRG00000050144	ENSPTRG00000051131	ENSPTRG00000046440	ENSPTRG00000051273	ENSPTRG00000044519	ENSPTRG00000043041	ENSPTRG00000043123	ENSPTRG00000046023	ENSPTRG00000048366	ZNF337 (ENSPTRG00000013344)	NANP (ENSPTRG00000044350)	NINL (ENSPTRG00000013342)	GINS1 (ENSPTRG00000050964)	ABHD12 (ENSPTRG00000013340)	PYGB (ENSPTRG00000049662)
Chimpanzee	MODERN SPECIES	939																ENSPTRG00000051484 #22
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	19	LRP5 (ENSNLEG00000006550)	C11orf24 (ENSNLEG00000006549)	KMT5B (ENSNLEG00000033680) #7	CHKA (ENSNLEG00000006538) #8	TCIRG1 (ENSNLEG00000006527) #9	NDUFS8 (ENSNLEG00000006525) #10	ALDH3B1 (ENSNLEG00000006517)	UNC93B1 (ENSNLEG00000006504) #12	ALDH3B2 (ENSNLEG00000006499) #13	ACY3 (ENSNLEG00000006494) #14	ENSNLEG00000006493 #15	ENSNLEG00000028816 #18	NDUFV1 (ENSNLEG00000006458) #19	ENSNLEG00000006448	ENSNLEG00000006441 #21	CDK2AP2 (ENSNLEG00000006438) #22	PITPNM1 (ENSNLEG00000026976) #23	AIP (ENSNLEG00000006435) #24	TMEM134 (ENSNLEG00000006430) #25	CABP4 (ENSNLEG00000006425) #26	GPR152 (ENSNLEG00000018914) #27	CORO1B (ENSNLEG00000006399) #29	PTPRCAP (ENSNLEG00000006397) #30	RPS6KB2 (ENSNLEG00000006392) #31	CARNS1 (ENSNLEG00000006317) #32	TBC1D10C (ENSNLEG00000006381) #33	PPP1CA (ENSNLEG00000006360) #34	RAD9A (ENSNLEG00000006355) #35	ENSNLEG00000006348	ENSNLEG00000029224	SSH3 (ENSNLEG00000006321) #37
Gibbon	MODERN SPECIES	1	DLX6 (ENSNLEG00000016008)	ENSNLEG00000016010	SDHAF3 (ENSNLEG00000016014)	TAC1 (ENSNLEG00000016015)	ASNS (ENSNLEG00000016044)	ENSNLEG00000033587	C1GALT1 (ENSNLEG00000016087)	COL28A1 (ENSNLEG00000016093)	MIOS (ENSNLEG00000016134)	RPA3 (ENSNLEG00000033298)	UMAD1 (ENSNLEG00000016155)	ENSNLEG00000035067	ENSNLEG00000016158	ICA1 (ENSNLEG00000016162)	NXPH1 (ENSNLEG00000016182)	ENSNLEG00000032207 #22	ENSNLEG00000033241	PHF14 (ENSNLEG00000016184)	THSD7A (ENSNLEG00000016197)	TMEM106B (ENSNLEG00000016225)	VWDE (ENSNLEG00000016235)	ENSNLEG00000028754	ENSNLEG00000035206	SCIN (ENSNLEG00000016265)	ARL4A (ENSNLEG00000016295)	ETV1 (ENSNLEG00000016296)	DGKB (ENSNLEG00000016331)	AGMO (ENSNLEG00000016359)	MEOX2 (ENSNLEG00000016373)	CRPPA (ENSNLEG00000016377)	ENSNLEG00000031958
Platyrrhini	ANCESTRAL SPECIES	15	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Cebidae	ANCESTRAL SPECIES		ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Cebidae_a	DUPLICATION
Cebidae_a	ANCESTRAL SPECIES	18	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334.g #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Capuchin	MODERN SPECIES	102	C11orf24 (ENSCCAG00000029246)	KMT5B (ENSCCAG00000022496) #7	CHKA (ENSCCAG00000036109) #8	ENSCCAG00000030447 #9	ENSCCAG00000036231 #10	ALDH3B1 (ENSCCAG00000020585)	UNC93B1 (ENSCCAG00000034142) #12	ALDH3B2 (ENSCCAG00000025402) #13	ACY3 (ENSCCAG00000030848) #14	TBX10 (ENSCCAG00000035836) #15	ENSCCAG00000034598 #18	ENSCCAG00000024841	NDUFV1 (ENSCCAG00000027983) #19	ENSCCAG00000037776	CABP2 (ENSCCAG00000018244) #21	ENSCCAG00000028353 #22	PITPNM1 (ENSCCAG00000031570) #23	AIP (ENSCCAG00000027474) #24	TMEM134 (ENSCCAG00000004430) #25	CABP4 (ENSCCAG00000027469) #26	GPR152 (ENSCCAG00000014617) #27	CORO1B (ENSCCAG00000019041) #29	PTPRCAP (ENSCCAG00000025867) #30	RPS6KB2 (ENSCCAG00000028374) #31	CARNS1 (ENSCCAG00000035608) #32	TBC1D10C (ENSCCAG00000028758) #33	PPP1CA (ENSCCAG00000020614) #34	RAD9A (ENSCCAG00000031278) #35	CLCF1 (ENSCCAG00000033675)	POLD4 (ENSCCAG00000019708) #36	SSH3 (ENSCCAG00000009573) #37
Bolivian squirrel monkey	MODERN SPECIES	184	KMT5B (ENSSBOG00000018620) #7	ENSSBOG00000014251	CHKA (ENSSBOG00000029779) #8	TCIRG1 (ENSSBOG00000029778) #9	NDUFS8 (ENSSBOG00000020737) #10	ALDH3B1 (ENSSBOG00000021610)	UNC93B1 (ENSSBOG00000027617) #12	ENSSBOG00000019661	ALDH3B2 (ENSSBOG00000022925) #13	ACY3 (ENSSBOG00000026048) #14	TBX10 (ENSSBOG00000027660) #15	ENSSBOG00000028474	ENSSBOG00000030579 #19	GSTP1 (ENSSBOG00000031760) #20	CABP2 (ENSSBOG00000025484) #21	CDK2AP2 (ENSSBOG00000027862) #22	PITPNM1 (ENSSBOG00000014886) #23	AIP (ENSSBOG00000024333) #24	TMEM134 (ENSSBOG00000027525) #25	CABP4 (ENSSBOG00000022028) #26	CORO1B (ENSSBOG00000034400) #29	PTPRCAP (ENSSBOG00000021090) #30	RPS6KB2 (ENSSBOG00000025951) #31	CARNS1 (ENSSBOG00000032755) #32	TBC1D10C (ENSSBOG00000022365) #33	RAD9A (ENSSBOG00000030122) #35	CLCF1 (ENSSBOG00000025814)	POLD4 (ENSSBOG00000030107) #36	SSH3 (ENSSBOG00000034638) #37	ANKRD13D (ENSSBOG00000034525)	GRK2 (ENSSBOG00000027760)
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00940000160334.h #22
Capuchin	MODERN SPECIES	780																ENSCCAG00000010093 #22	ENSCCAG00000028629	ENSCCAG00000028674	ZNF595 (ENSCCAG00000020641)	ENSCCAG00000022352 ##34
Marmoset	MODERN SPECIES	2	ENSCJAG00000022979	CHKA (ENSCJAG00000015722) #8	TCIRG1 (ENSCJAG00000015705) #9	ENSCJAG00000015686 #10	ALDH3B1 (ENSCJAG00000015676)	UNC93B1 (ENSCJAG00000045026) #12	ALDH3B2 (ENSCJAG00000077097) #13	ACY3 (ENSCJAG00000070289) #14	TBX10 (ENSCJAG00000071274) #15	ENSCJAG00000041608	NDUFV1 (ENSCJAG00000000839) #19	ENSCJAG00000031574	ENSCJAG00000000879	ENSCJAG00000000379	CABP2 (ENSCJAG00000000890) #21	CDK2AP2 (ENSCJAG00000044071) #22	PITPNM1 (ENSCJAG00000000908) #23	AIP (ENSCJAG00000000929) #24	TMEM134 (ENSCJAG00000000933) #25	CABP4 (ENSCJAG00000000939) #26	GPR152 (ENSCJAG00000000943) #27	CORO1B (ENSCJAG00000000945) #29	PTPRCAP (ENSCJAG00000000963) #30	RPS6KB2 (ENSCJAG00000000967) #31	CARNS1 (ENSCJAG00000000981) #32	TBC1D10C (ENSCJAG00000000998) #33	ENSCJAG00000000983 #34	CLCF1 (ENSCJAG00000042907)	POLD4 (ENSCJAG00000085771) #36	RAD9A (ENSCJAG00000047617) #35	SSH3 (ENSCJAG00000000956) #37
Mas night monkey	MODERN SPECIES	411	ENSANAG00000017977	KMT5B (ENSANAG00000029415) #7	CHKA (ENSANAG00000025868) #8	TCIRG1 (ENSANAG00000032110) #9	NDUFS8 (ENSANAG00000033484) #10	ALDH3B1 (ENSANAG00000022742)	UNC93B1 (ENSANAG00000026380) #12	ALDH3B2 (ENSANAG00000022991) #13	ACY3 (ENSANAG00000024838) #14	TBX10 (ENSANAG00000029548) #15	ENSANAG00000026791	ENSANAG00000026619 #18	NDUFV1 (ENSANAG00000029177) #19	GSTP1 (ENSANAG00000031563) #20	CABP2 (ENSANAG00000030444) #21	CDK2AP2 (ENSANAG00000034157) #22	PITPNM1 (ENSANAG00000025829) #23	AIP (ENSANAG00000022168) #24	TMEM134 (ENSANAG00000033007) #25	GPR152 (ENSANAG00000030207) #27	CABP4 (ENSANAG00000024753) #26	CORO1B (ENSANAG00000021241) #29	PTPRCAP (ENSANAG00000032799) #30	ENSANAG00000029796 #31	CARNS1 (ENSANAG00000022851) #32	TBC1D10C (ENSANAG00000019534) #33	PPP1CA (ENSANAG00000023829) #34	RAD9A (ENSANAG00000026397) #35	CLCF1 (ENSANAG00000026225)	POLD4 (ENSANAG00000034188) #36	SSH3 (ENSANAG00000027661) #37
Tarsier	MODERN SPECIES	1586															CABP2 (ENSTSYG00000032193) #21	CDK2AP2 (ENSTSYG00000011970) #22
Strepsirrhini	ANCESTRAL SPECIES	35	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000163374	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Lemuriformes	ANCESTRAL SPECIES	14	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000163374	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37	ENSGT00950000182928.A.a.b
Lemuriformes_a	ANCESTRAL SPECIES	3	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37	ENSGT00950000182928.A.a.b
Greater bamboo lemur	MODERN SPECIES	1196						UNC93B1 (ENSPSMG00000017927) #12	ALDH3B2 (ENSPSMG00000017876) #13	ACY3 (ENSPSMG00000017835) #14	TBX10 (ENSPSMG00000017814) #15	ENSPSMG00000017796	ENSPSMG00000017792 #18	NDUFV1 (ENSPSMG00000017743) #19	GSTP1 (ENSPSMG00000017706) #20	ENSPSMG00000017669	CABP2 (ENSPSMG00000017650) #21	CDK2AP2 (ENSPSMG00000017631) #22	PITPNM1 (ENSPSMG00000017619) #23	AIP (ENSPSMG00000017577) #24	TMEM134 (ENSPSMG00000017552) #25	CABP4 (ENSPSMG00000017519) #26	CORO1B (ENSPSMG00000017512) #29	PTPRCAP (ENSPSMG00000017495) #30	RPS6KB2 (ENSPSMG00000017487) #31	CARNS1 (ENSPSMG00000017445) #32	TBC1D10C (ENSPSMG00000017434) #33	PPP1CA (ENSPSMG00000017392) #34	RAD9A (ENSPSMG00000017323) #35	CLCF1 (ENSPSMG00000017291)	POLD4 (ENSPSMG00000017275) #36	SSH3 (ENSPSMG00000017256) #37	ANKRD13D (ENSPSMG00000017212)
Coquerels sifaka	MODERN SPECIES	124	KMT5B (ENSPCOG00000028166) #7	CHKA (ENSPCOG00000027662) #8	TCIRG1 (ENSPCOG00000027699) #9	NDUFS8 (ENSPCOG00000000121) #10	ALDH3B1 (ENSPCOG00000028800)	UNC93B1 (ENSPCOG00000023404) #12	ALDH3B2 (ENSPCOG00000020768) #13	ACY3 (ENSPCOG00000016521) #14	ENSPCOG00000026012	ENSPCOG00000017507	ENSPCOG00000025071 #18	NDUFV1 (ENSPCOG00000016494) #19	GSTP1 (ENSPCOG00000025031) #20	ENSPCOG00000013544	CABP2 (ENSPCOG00000027212) #21	CDK2AP2 (ENSPCOG00000017754) #22	PITPNM1 (ENSPCOG00000025532) #23	AIP (ENSPCOG00000027570) #24	TMEM134 (ENSPCOG00000014918) #25	CABP4 (ENSPCOG00000018937) #26	CORO1B (ENSPCOG00000014764) #29	PTPRCAP (ENSPCOG00000028437) #30	RPS6KB2 (ENSPCOG00000018557) #31	CARNS1 (ENSPCOG00000026244) #32	TBC1D10C (ENSPCOG00000021827) #33	PPP1CA (ENSPCOG00000026258) #34	RAD9A (ENSPCOG00000021291) #35	CLCF1 (ENSPCOG00000020098)	POLD4 (ENSPCOG00000023695) #36	SSH3 (ENSPCOG00000015771) #37	ANKRD13D (ENSPCOG00000022746)
Mouse lemur	MODERN SPECIES	27	C11orf24 (ENSMICG00000035582)	KMT5B (ENSMICG00000028472) #7	CHKA (ENSMICG00000009554) #8	TCIRG1 (ENSMICG00000009530) #9	ENSMICG00000009523 #10	ALDH3B1 (ENSMICG00000009516)	UNC93B1 (ENSMICG00000009511) #12	ALDH3B2 (ENSMICG00000002573) #13	ACY3 (ENSMICG00000010175) #14	ENSMICG00000038049	ENSMICG00000031375	ENSMICG00000034887 #18	NDUFV1 (ENSMICG00000038015) #19	GSTP1 (ENSMICG00000035404) #20	CABP2 (ENSMICG00000006052) #21	CDK2AP2 (ENSMICG00000029533) #22	PITPNM1 (ENSMICG00000004138) #23	AIP (ENSMICG00000037390) #24	TMEM134 (ENSMICG00000031454) #25	CABP4 (ENSMICG00000004133) #26	CORO1B (ENSMICG00000004114) #29	RPS6KB2 (ENSMICG00000004111) #31	CARNS1 (ENSMICG00000004109) #32	TBC1D10C (ENSMICG00000004107) #33	PPP1CA (ENSMICG00000004103) #34	RAD9A (ENSMICG00000035662) #35	CLCF1 (ENSMICG00000029277)	POLD4 (ENSMICG00000004091) #36	ENSMICG00000012349	SSH3 (ENSMICG00000004087) #37	ANKRD13D (ENSMICG00000004074)
Bushbaby	MODERN SPECIES	249	C11orf24 (ENSOGAG00000032648)	KMT5B (ENSOGAG00000025516) #7	CHKA (ENSOGAG00000000790) #8	TCIRG1 (ENSOGAG00000028104) #9	NDUFS8 (ENSOGAG00000013220) #10	ALDH3B1 (ENSOGAG00000000789)	UNC93B1 (ENSOGAG00000000787) #12	ALDH3B2 (ENSOGAG00000000786) #13	ACY3 (ENSOGAG00000000785) #14	ENSOGAG00000000784	ENSOGAG00000000783	ENSOGAG00000025265 #18	NDUFV1 (ENSOGAG00000000781) #19	ENSOGAG00000001869	CABP2 (ENSOGAG00000032757) #21	CDK2AP2 (ENSOGAG00000008275) #22	PITPNM1 (ENSOGAG00000008269) #23	AIP (ENSOGAG00000008266) #24	TMEM134 (ENSOGAG00000030275) #25	CABP4 (ENSOGAG00000010618) #26	GPR152 (ENSOGAG00000027135) #27	CORO1B (ENSOGAG00000008262) #29	PTPRCAP (ENSOGAG00000025048) #30	RPS6KB2 (ENSOGAG00000010658) #31	CARNS1 (ENSOGAG00000010654) #32	TBC1D10C (ENSOGAG00000031940) #33	PPP1CA (ENSOGAG00000033516) #34	RAD9A (ENSOGAG00000028665) #35	CLCF1 (ENSOGAG00000010653)	POLD4 (ENSOGAG00000028157) #36	SSH3 (ENSOGAG00000010647) #37
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT01100000264273	ENSGT00940000163374	ENSGT00940000163889 #16	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Tree shrew	MODERN SPECIES	5537															CABP2 (ENSTBEG00000005678) #21	CDK2AP2 (ENSTBEG00000005476) #22	PITPNM1 (ENSTBEG00000005091) #23	CABP4 (ENSTBEG00000005024) #26	CORO1B (ENSTBEG00000004619) #29	TBC1D10C (ENSTBEG00000004527) #33	PPP1CA (ENSTBEG00000004438) #34	CLCF1 (ENSTBEG00000004318)	POLD4 (ENSTBEG00000004226) #36	SSH3 (ENSTBEG00000004002) #37	GRK2 (ENSTBEG00000003700)	KDM2A (ENSTBEG00000003398)	RHOD (ENSTBEG00000003165)	SYT12 (ENSTBEG00000002982)	LRFN4 (ENSTBEG00000002925)	PC (ENSTBEG00000002657)	ENSTBEG00000002419
Glires	ANCESTRAL SPECIES	1	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT01100000264273	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Lagomorpha	ANCESTRAL SPECIES	439																ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24
Pika	MODERN SPECIES	4837															ENSOPRG00000002333	CDK2AP2 (ENSOPRG00000002323) #22	PITPNM1 (ENSOPRG00000002254) #23	AIP (ENSOPRG00000002244) #24
Rodentia	ANCESTRAL SPECIES	1	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT01100000264273	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000163374	ENSGT00940000163889 #16	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Kangaroo rat	MODERN SPECIES	373	ENSDORG00000015449 #7	Chka (ENSDORG00000012471) #8	Tcirg1 (ENSDORG00000012469) #9	ENSDORG00000003567	Aldh3b1 (ENSDORG00000003566)	Unc93b1 (ENSDORG00000003564) #12	ENSDORG00000027104 #13	Acy3 (ENSDORG00000027105) #14	Tbx10 (ENSDORG00000010070)	ENSDORG00000010072 #16	Doc2g (ENSDORG00000026896) #18	Ndufv1 (ENSDORG00000010074) #19	ENSDORG00000002063 #20	Gstp3 (ENSDORG00000024771)	Cabp2 (ENSDORG00000014527) #21	Cdk2ap2 (ENSDORG00000025739) #22	ENSDORG00000014531 #23	Aip (ENSDORG00000014533) #24	Tmem134 (ENSDORG00000014535) #25	Cabp4 (ENSDORG00000014536) #26	Gpr152 (ENSDORG00000028173) #27	ENSDORG00000014537 #29	Ptprcap (ENSDORG00000014538) #30	Rps6kb2 (ENSDORG00000014540) #31	ENSDORG00000014541	Tbc1d10c (ENSDORG00000029199) #33	ENSDORG00000012300 #34	Rad9a (ENSDORG00000012297) #35	Clcf1 (ENSDORG00000015120)	Pold4 (ENSDORG00000023882) #36	Ssh3 (ENSDORG00000010943) #37
Myomorpha	ANCESTRAL SPECIES	4	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000163374	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Muroidea	ANCESTRAL SPECIES	2	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000163374	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Muroidea_A	ANCESTRAL SPECIES		ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b.f #13	ENSGT00940000155904.e.b.e #13	ENSGT00390000001189.b #14	ENSGT00940000163374	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b.f #13	ENSGT00940000155904.e.b.e #13	ENSGT00390000001189.b #14	ENSGT00940000163374	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641.b #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b.f #13	ENSGT00940000155904.e.b.e #13	ENSGT00390000001189.b #14	ENSGT00940000163374	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641.b #19	ENSGT00390000010641.a #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Chinese hamster chok1gshd	MODERN SPECIES	401	Chka (ENSCGRG00001013471) #8	Tcirg1 (ENSCGRG00001015923) #9	Ndufs8 (ENSCGRG00001023988) #10	Aldh3b1 (ENSCGRG00001001915)	Unc93b1 (ENSCGRG00001017240) #12	Aldh3b3 (ENSCGRG00001006169) #13	Aldh3b2 (ENSCGRG00001013897) #13	Acy3 (ENSCGRG00001022288) #14	Tbx10 (ENSCGRG00001004850)	Nudt8 (ENSCGRG00001011961)	Doc2g (ENSCGRG00001018346) #18	Ndufv1 (ENSCGRG00001015739) #19	Gstp1 (ENSCGRG00001020577) #20	Gstp3 (ENSCGRG00001014473)	Cabp2 (ENSCGRG00001008642) #21	Cdk2ap2 (ENSCGRG00001012920) #22	Pitpnm1 (ENSCGRG00001023287) #23	Aip (ENSCGRG00001007960) #24	Tmem134 (ENSCGRG00001010615) #25	Cabp4 (ENSCGRG00001017640) #26	Gpr152 (ENSCGRG00001019323) #27	Coro1b (ENSCGRG00001004662) #29	Ptprcap (ENSCGRG00001010731) #30	Rps6kb2 (ENSCGRG00001000810) #31	Ssh3 (ENSCGRG00001013911) #37	Ankrd13d (ENSCGRG00001015858)	Grk2 (ENSCGRG00001017520)	Kdm2a (ENSCGRG00001022950)	Rhod (ENSCGRG00001010682)	Syt12 (ENSCGRG00001017074)	2010003K11Rik (ENSCGRG00001018760)
Golden Hamster	MODERN SPECIES	617	ENSMAUG00000018025	Kmt5b (ENSMAUG00000018918) #7	Chka (ENSMAUG00000017295) #8	Ndufs8 (ENSMAUG00000017880) #10	Aldh3b1 (ENSMAUG00000017809)	Unc93b1 (ENSMAUG00000018290) #12	Aldh3b2 (ENSMAUG00000017545) #13	Acy3 (ENSMAUG00000017411) #14	Tbx10 (ENSMAUG00000019219)	Nudt8 (ENSMAUG00000017149)	Doc2g (ENSMAUG00000017758) #18	ENSMAUG00000017366 #19	Gstp1 (ENSMAUG00000017855) #20	Gstp3 (ENSMAUG00000016934)	Cabp2 (ENSMAUG00000017000) #21	Cdk2ap2 (ENSMAUG00000017833) #22	Pitpnm1 (ENSMAUG00000016912) #23	Aip (ENSMAUG00000017268) #24	Tmem134 (ENSMAUG00000017612) #25	Cabp4 (ENSMAUG00000017898) #26	Gpr152 (ENSMAUG00000016522) #27	Coro1b (ENSMAUG00000016373) #29	Ptprcap (ENSMAUG00000017359) #30	Rps6kb2 (ENSMAUG00000017230) #31	Carns1 (ENSMAUG00000017398) #32	Tbc1d10c (ENSMAUG00000017190) #33	Ppp1ca (ENSMAUG00000016057) #34	Rad9a (ENSMAUG00000017164) #35	Clcf1 (ENSMAUG00000017012)	Pold4 (ENSMAUG00000016004) #36	Ssh3 (ENSMAUG00000016554) #37
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b.f #13	ENSGT00940000155904.e.b.e #13	ENSGT00390000001189.b #14	ENSGT00940000163374	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641.b #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Prairie vole	MODERN SPECIES	16	Chka (ENSMOCG00000007076) #8	Tcirg1 (ENSMOCG00000005946) #9	ENSMOCG00000019842	Aldh3b1 (ENSMOCG00000020373)	Unc93b1 (ENSMOCG00000008961) #12	Aldh3b3 (ENSMOCG00000021302) #13	Aldh3b2 (ENSMOCG00000022624) #13	Acy3 (ENSMOCG00000016646) #14	Tbx10 (ENSMOCG00000018876)	Nudt8 (ENSMOCG00000002104)	Doc2g (ENSMOCG00000007770) #18	Ndufv1 (ENSMOCG00000018645) #19	ENSMOCG00000020246 #20	Gstp3 (ENSMOCG00000020117)	Cabp2 (ENSMOCG00000022563) #21	Cdk2ap2 (ENSMOCG00000011876) #22	Pitpnm1 (ENSMOCG00000006486) #23	Aip (ENSMOCG00000001242) #24	Tmem134 (ENSMOCG00000002494) #25	Cabp4 (ENSMOCG00000013395) #26	Gpr152 (ENSMOCG00000015199) #27	Coro1b (ENSMOCG00000015585) #29	Ptprcap (ENSMOCG00000021498) #30	Rps6kb2 (ENSMOCG00000006354) #31	ENSMOCG00000018725	Tbc1d10c (ENSMOCG00000022473) #33	ENSMOCG00000000843 #34	Rad9a (ENSMOCG00000011209) #35	Clcf1 (ENSMOCG00000019813)	Pold4 (ENSMOCG00000020727) #36	Ssh3 (ENSMOCG00000010426) #37
Northern American deer mouse	MODERN SPECIES		Ndufs8 (ENSPEMG00000014723) #10	Aldh3b1 (ENSPEMG00000026438)	Unc93b1 (ENSPEMG00000015773) #12	Aldh3b3 (ENSPEMG00000024395) #13	Aldh3b2 (ENSPEMG00000026919) #13	ENSPEMG00000014977 #14	Tbx10 (ENSPEMG00000017754)	Nudt8 (ENSPEMG00000018440)	Doc2g (ENSPEMG00000005234) #18	Ndufv1 (ENSPEMG00000011587) #19	ENSPEMG00000005365	ENSPEMG00000029247	ENSPEMG00000016907 #20	Gstp3 (ENSPEMG00000030796)	Cabp2 (ENSPEMG00000005235) #21	Cdk2ap2 (ENSPEMG00000028665) #22	Pitpnm1 (ENSPEMG00000001355) #23	Aip (ENSPEMG00000005397) #24	Tmem134 (ENSPEMG00000008430) #25	Cabp4 (ENSPEMG00000008224) #26	Gpr152 (ENSPEMG00000008897) #27	Coro1b (ENSPEMG00000011980) #29	Ptprcap (ENSPEMG00000029717) #30	Rps6kb2 (ENSPEMG00000016166) #31	Carns1 (ENSPEMG00000010758) #32	Tbc1d10c (ENSPEMG00000013534) #33	Ppp1ca (ENSPEMG00000009056) #34	Rad9a (ENSPEMG00000006275) #35	Clcf1 (ENSPEMG00000008786)	Pold4 (ENSPEMG00000025422) #36	Ssh3 (ENSPEMG00000018081) #37
Murinae	ANCESTRAL SPECIES		ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b.f #13	ENSGT00940000155904.e.b.e #13	ENSGT00390000001189.b #14	ENSGT00940000163374	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Mus	ANCESTRAL SPECIES		ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b.f #13	ENSGT00940000155904.e.b.e #13	ENSGT00390000001189.b #14	ENSGT00940000163374	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Mus_A	ANCESTRAL SPECIES	16	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b.f #13	ENSGT00940000155904.e.b.e #13	ENSGT00390000001189.b #14	ENSGT00940000163374	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Ryukyu mouse	MODERN SPECIES	10	Tcirg1 (MGP_CAROLIEiJ_G0022473) #9	Ndufs8 (MGP_CAROLIEiJ_G0022474) #10	Aldh3b1 (MGP_CAROLIEiJ_G0022475)	Unc93b1 (MGP_CAROLIEiJ_G0022476) #12	MGP_CAROLIEiJ_G0022477	Aldh3b2 (MGP_CAROLIEiJ_G0022478) #13	Acy3 (MGP_CAROLIEiJ_G0022479) #14	Tbx10 (MGP_CAROLIEiJ_G0022480)	Nudt8 (MGP_CAROLIEiJ_G0022481)	Doc2g (MGP_CAROLIEiJ_G0022482) #18	Ndufv1 (MGP_CAROLIEiJ_G0022483) #19	MGP_CAROLIEiJ_G0022484 #20	MGP_CAROLIEiJ_G0022485 #20	Gstp3 (MGP_CAROLIEiJ_G0022486)	Cabp2 (MGP_CAROLIEiJ_G0022487) #21	Cdk2ap2 (MGP_CAROLIEiJ_G0022488) #22	Pitpnm1 (MGP_CAROLIEiJ_G0022489) #23	Aip (MGP_CAROLIEiJ_G0022490) #24	Cabp4 (MGP_CAROLIEiJ_G0022491) #26	Gpr152 (MGP_CAROLIEiJ_G0022492) #27	Coro1b (MGP_CAROLIEiJ_G0022493) #29	Ptprcap (MGP_CAROLIEiJ_G0022494) #30	Rps6kb2 (MGP_CAROLIEiJ_G0022495) #31	Carns1 (MGP_CAROLIEiJ_G0022496) #32	Tbc1d10c (MGP_CAROLIEiJ_G0022497) #33	Ppp1ca (MGP_CAROLIEiJ_G0022498) #34	Rad9a (MGP_CAROLIEiJ_G0022499) #35	Clcf1 (MGP_CAROLIEiJ_G0022500)	Pold4 (MGP_CAROLIEiJ_G0022501) #36	Ssh3 (MGP_CAROLIEiJ_G0022502) #37	Ankrd13d (MGP_CAROLIEiJ_G0022503)
Mus_B	ANCESTRAL SPECIES	16	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b.f #13	ENSGT00940000155904.e.b.e #13	ENSGT00390000001189.b #14	ENSGT00940000163374	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Mouse	MODERN SPECIES	10	Tcirg1 (ENSMUSG00000001750) #9	Ndufs8 (ENSMUSG00000059734) #10	Aldh3b1 (ENSMUSG00000024885)	Unc93b1 (ENSMUSG00000036908) #12	Aldh3b3 (ENSMUSG00000037263) #13	Aldh3b2 (ENSMUSG00000075296) #13	Acy3 (ENSMUSG00000024866) #14	Tbx10 (ENSMUSG00000037477)	Nudt8 (ENSMUSG00000110949)	Doc2g (ENSMUSG00000024871) #18	Ndufv1 (ENSMUSG00000037916) #19	Gstp1 (ENSMUSG00000060803) #20	Gstp2 (ENSMUSG00000038155) #20	Gstp3 (ENSMUSG00000058216)	Cabp2 (ENSMUSG00000024857) #21	Cdk2ap2 (ENSMUSG00000024856) #22	Pitpnm1 (ENSMUSG00000024851) #23	Aip (ENSMUSG00000024847) #24	Tmem134 (ENSMUSG00000024845) #25	Cabp4 (ENSMUSG00000024842) #26	Gpr152 (ENSMUSG00000044724) #27	Coro1b (ENSMUSG00000024835) #29	Ptprcap (ENSMUSG00000045826) #30	Rps6kb2 (ENSMUSG00000024830) #31	Carns1 (ENSMUSG00000075289) #32	Tbc1d10c (ENSMUSG00000040247) #33	Ppp1ca (ENSMUSG00000040385) #34	Rad9a (ENSMUSG00000024824) #35	Clcf1 (ENSMUSG00000040663)	Gm45928 (ENSMUSG00000117873)	Pold4 (ENSMUSG00000024854) #36
Mus_C	ANCESTRAL SPECIES	25	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00920000150159	ENSGT00940000155904.e.b.e #13	ENSGT00390000001189.b #14	ENSGT00940000163374	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Steppe mouse	MODERN SPECIES	3175														Gstp3 (ENSMSIG00000006920)	ENSMSIG00000006735 #21	Cdk2ap2 (ENSMSIG00000006691) #22	Pitpnm1 (ENSMSIG00000006623) #23	ENSMSIG00000006607 #24	ENSMSIG00000006594 #25	Cabp4 (ENSMSIG00000006571) #26	Gpr152 (ENSMSIG00000006566) #27	Coro1b (ENSMSIG00000006535) #29	Ptprcap (ENSMSIG00000006524) #30	Rps6kb2 (ENSMSIG00000006398) #31	Carns1 (ENSMSIG00000006360) #32	Tbc1d10c (ENSMSIG00000006331) #33	Ppp1ca (ENSMSIG00000006291) #34	Rad9a (ENSMSIG00000006213) #35	Clcf1 (ENSMSIG00000006192)	Pold4 (ENSMSIG00000006171) #36	ENSMSIG00000005977 #37
spretus	MODERN SPECIES	10	Kmt5b (MGP_SPRETEiJ_G0023387) #7	Chka (MGP_SPRETEiJ_G0023388) #8	MGP_SPRETEiJ_G0023389 #13	Tcirg1 (MGP_SPRETEiJ_G0023390) #9	Ndufs8 (MGP_SPRETEiJ_G0023391) #10	Aldh3b1 (MGP_SPRETEiJ_G0023392)	Unc93b1 (MGP_SPRETEiJ_G0023393) #12	MGP_SPRETEiJ_G0023394	Acy3 (MGP_SPRETEiJ_G0023395) #14	Tbx10 (MGP_SPRETEiJ_G0023396)	Nudt8 (MGP_SPRETEiJ_G0023397)	Doc2g (MGP_SPRETEiJ_G0023398) #18	Ndufv1 (MGP_SPRETEiJ_G0023399) #19	Gstp3 (MGP_SPRETEiJ_G0023400)	Cabp2 (MGP_SPRETEiJ_G0023401) #21	Cdk2ap2 (MGP_SPRETEiJ_G0023402) #22	Pitpnm1 (MGP_SPRETEiJ_G0023403) #23	MGP_SPRETEiJ_G0023404 #24	Cabp4 (MGP_SPRETEiJ_G0023405) #26	Gpr152 (MGP_SPRETEiJ_G0023406) #27	Coro1b (MGP_SPRETEiJ_G0023407) #29	Ptprcap (MGP_SPRETEiJ_G0023408) #30	Rps6kb2 (MGP_SPRETEiJ_G0023409) #31	Carns1 (MGP_SPRETEiJ_G0023410) #32	Tbc1d10c (MGP_SPRETEiJ_G0023411) #33	Ppp1ca (MGP_SPRETEiJ_G0023412) #34	Rad9a (MGP_SPRETEiJ_G0023413) #35	Clcf1 (MGP_SPRETEiJ_G0023414)	Pold4 (MGP_SPRETEiJ_G0023415) #36	Ssh3 (MGP_SPRETEiJ_G0023416) #37	Ankrd13d (MGP_SPRETEiJ_G0023417)
Shrew mouse	MODERN SPECIES		Chka (MGP_PahariEiJ_G0013969) #8	Tcirg1 (MGP_PahariEiJ_G0013970) #9	Ndufs8 (MGP_PahariEiJ_G0013971) #10	Aldh3b1 (MGP_PahariEiJ_G0013972)	Unc93b1 (MGP_PahariEiJ_G0013973) #12	MGP_PahariEiJ_G0013974	Aldh3b2 (MGP_PahariEiJ_G0013975) #13	Acy3 (MGP_PahariEiJ_G0013976) #14	Tbx10 (MGP_PahariEiJ_G0013977)	Nudt8 (MGP_PahariEiJ_G0013978)	Doc2g (MGP_PahariEiJ_G0013979) #18	Ndufv1 (MGP_PahariEiJ_G0013980) #19	MGP_PahariEiJ_G0013981 #20	Gstp3 (MGP_PahariEiJ_G0013982)	Cabp2 (MGP_PahariEiJ_G0013983) #21	Cdk2ap2 (MGP_PahariEiJ_G0013984) #22	Pitpnm1 (MGP_PahariEiJ_G0013985) #23	Aip (MGP_PahariEiJ_G0013986) #24	Cabp4 (MGP_PahariEiJ_G0013987) #26	Gpr152 (MGP_PahariEiJ_G0013988) #27	MGP_PahariEiJ_G0013989 #29	Ptprcap (MGP_PahariEiJ_G0013990) #30	Rps6kb2 (MGP_PahariEiJ_G0013991) #31	Carns1 (MGP_PahariEiJ_G0013992) #32	Tbc1d10c (MGP_PahariEiJ_G0013993) #33	Ppp1ca (MGP_PahariEiJ_G0013994) #34	Rad9a (MGP_PahariEiJ_G0013995) #35	Clcf1 (MGP_PahariEiJ_G0013996)	Pold4 (MGP_PahariEiJ_G0013997) #36	Ssh3 (MGP_PahariEiJ_G0013998) #37	Ankrd13d (MGP_PahariEiJ_G0013999)
Rat	MODERN SPECIES		Ndufs8 (ENSRNOG00000017446) #10	Aldh3b1 (ENSRNOG00000017512)	Unc93b1 (ENSRNOG00000017703) #12	LOC120099971 (ENSRNOG00000017872) #13	ENSRNOG00000066970 #13	ENSRNOG00000069460	Aldh3b2 (ENSRNOG00000068138) #13	Tbx10 (ENSRNOG00000017944)	Acy3 (ENSRNOG00000017901) #14	Nudt8 (ENSRNOG00000017955)	Doc2g (ENSRNOG00000018029) #18	Ndufv1 (ENSRNOG00000018117) #19	Gstp1 (ENSRNOG00000018237) #20	Gstp3 (ENSRNOG00000018287)	Cabp2 (ENSRNOG00000018339) #21	Cdk2ap2 (ENSRNOG00000018391) #22	Pitpnm1 (ENSRNOG00000018553) #23	Aip (ENSRNOG00000022289) #24	Tmem134 (ENSRNOG00000022153) #25	Cabp4 (ENSRNOG00000022044) #26	Gpr152 (ENSRNOG00000021912) #27	Coro1b (ENSRNOG00000021828) #29	Ptprcap (ENSRNOG00000021724) #30	Rps6kb2 (ENSRNOG00000021689) #31	Carns1 (ENSRNOG00000018603) #32	Tbc1d10c (ENSRNOG00000021510) #33	Ppp1ca (ENSRNOG00000018708) #34	Rad9a (ENSRNOG00000018729) #35	Clcf1 (ENSRNOG00000018752)	Pold4 (ENSRNOG00000018765) #36	Ssh3 (ENSRNOG00000018878) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1818												Ndufv1 (ENSNGAG00000013048) #19	ENSNGAG00000014047 #20	Gstp3 (ENSNGAG00000000204)	Cabp2 (ENSNGAG00000014616) #21	Cdk2ap2 (ENSNGAG00000007775) #22	Pitpnm1 (ENSNGAG00000020386) #23	Aip (ENSNGAG00000020330) #24	Tmem134 (ENSNGAG00000017238) #25	Cabp4 (ENSNGAG00000015044) #26	Gpr152 (ENSNGAG00000008380) #27	Coro1b (ENSNGAG00000019821) #29	Ptprcap (ENSNGAG00000017126) #30	Rps6kb2 (ENSNGAG00000005545) #31	Carns1 (ENSNGAG00000011168) #32	ENSNGAG00000020645 #33	ENSNGAG00000015301 #34	Rad9a (ENSNGAG00000018044) #35	Clcf1 (ENSNGAG00000013064)	Pold4 (ENSNGAG00000010450) #36	Ssh3 (ENSNGAG00000000431) #37
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	60	ENSJJAG00000017165 #7	Chka (ENSJJAG00000012227) #8	Tcirg1 (ENSJJAG00000017427) #9	Ndufs8 (ENSJJAG00000005023) #10	Aldh3b1 (ENSJJAG00000020011)	Unc93b1 (ENSJJAG00000023583) #12	ENSJJAG00000023409 #13	Acy3 (ENSJJAG00000019193) #14	Tbx10 (ENSJJAG00000022634)	Nudt8 (ENSJJAG00000023328)	Doc2g (ENSJJAG00000021341) #18	Ndufv1 (ENSJJAG00000017874) #19	ENSJJAG00000023512 #20	Gstp3 (ENSJJAG00000024233)	Cabp2 (ENSJJAG00000018419) #21	ENSJJAG00000013896 #22	ENSJJAG00000003374 #23	Aip (ENSJJAG00000015345) #24	Tmem134 (ENSJJAG00000016692) #25	Cabp4 (ENSJJAG00000011101) #26	Gpr152 (ENSJJAG00000022981) #27	ENSJJAG00000001838 #29	ENSJJAG00000016182 #31	Carns1 (ENSJJAG00000018930) #32	Tbc1d10c (ENSJJAG00000004622) #33	Ppp1ca (ENSJJAG00000010290) #34	Rad9a (ENSJJAG00000013292) #35	Clcf1 (ENSJJAG00000019178)	Pold4 (ENSJJAG00000015752) #36	Ssh3 (ENSJJAG00000013515) #37	Ankrd13d (ENSJJAG00000020972)
Lesser Egyptian jerboa	MODERN SPECIES	176																ENSJJAG00000013797 #22	Slc24a5 (ENSJJAG00000017458)	ENSJJAG00000015428	Ctxn2 (ENSJJAG00000013770)	Slc12a1 (ENSJJAG00000009847)	Fbn1 (ENSJJAG00000018173)	Eid1 (ENSJJAG00000022180)	Shc4 (ENSJJAG00000021146)	ENSJJAG00000017576	Secisbp2l (ENSJJAG00000014644)	Cops2 (ENSJJAG00000012737)	ENSJJAG00000012276	ENSJJAG00000011858	ENSJJAG00000011328	Galk2 (ENSJJAG00000010967)	Fgf7 (ENSJJAG00000010425)
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT01100000264273	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Sciuridae	ANCESTRAL SPECIES	22	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	2	ENSSVLG00005024959	CHKA (ENSSVLG00005025020) #8	ENSSVLG00005025068 #9	ENSSVLG00005025100 #9	NDUFS8 (ENSSVLG00005025114) #10	ALDH3B1 (ENSSVLG00005025147)	UNC93B1 (ENSSVLG00005025215) #12	ALDH3B2 (ENSSVLG00005025242) #13	ACY3 (ENSSVLG00005025257) #14	TBX10 (ENSSVLG00005025280) #15	ENSSVLG00005025291	ENSSVLG00005025305 #18	NDUFV1 (ENSSVLG00005025325) #19	GSTP1 (ENSSVLG00005025366) #20	CABP2 (ENSSVLG00005025399) #21	ENSSVLG00005004797 #22	PITPNM1 (ENSSVLG00005004838) #23	AIP (ENSSVLG00005004870) #24	TMEM134 (ENSSVLG00005004915) #25	CABP4 (ENSSVLG00005004965) #26	CORO1B (ENSSVLG00005004995) #29	PTPRCAP (ENSSVLG00005005019) #30	RPS6KB2 (ENSSVLG00005005042) #31	CARNS1 (ENSSVLG00005005060) #32	TBC1D10C (ENSSVLG00005005134) #33	PPP1CA (ENSSVLG00005005219) #34	RAD9A (ENSSVLG00005005281) #35	CLCF1 (ENSSVLG00005005308)	POLD4 (ENSSVLG00005005332) #36	ENSSVLG00005005401	SSH3 (ENSSVLG00005005420) #37
Eurasian red squirrel	MODERN SPECIES	7	ENSSVLG00005009267	ENSSVLG00005009250	GALNT15 (ENSSVLG00005009222)	ENSSVLG00005009200	ENSSVLG00005009153	ENSSVLG00005009053	RFTN1 (ENSSVLG00005009013)	ENSSVLG00005008982	ENSSVLG00005008951	ENSSVLG00005008794	PLCL2 (ENSSVLG00005008741)	TBC1D5 (ENSSVLG00005008563)	SATB1 (ENSSVLG00005024270)	KCNH8 (ENSSVLG00005024188)	ENSSVLG00005024173	ENSSVLG00005024162 #22	EFHB (ENSSVLG00005024067)	RAB5A (ENSSVLG00005024015)	PP2D1 (ENSSVLG00005023998)	ENSSVLG00005023944	ENSSVLG00005023908	ENSSVLG00005023889	ENSSVLG00005023862	ENSSVLG00005023824	ZNF385D (ENSSVLG00005023781)	TOMM22 (ENSSVLG00005023755)	ENSSVLG00005023738	ENSSVLG00005023698	ENSSVLG00005023675	ENSSVLG00005023653	UBE2E2 (ENSSVLG00005023634)
Marmotini	ANCESTRAL SPECIES	6	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Marmotini_b	ANCESTRAL SPECIES	19	ENSGT00940000156574.C	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Arctic ground squirrel	MODERN SPECIES	172	LRP5 (ENSUPAG00010007453)	ENSUPAG00010007475	KMT5B (ENSUPAG00010007478) #7	CHKA (ENSUPAG00010007654) #8	TCIRG1 (ENSUPAG00010007691) #9	NDUFS8 (ENSUPAG00010007713) #10	ALDH3B1 (ENSUPAG00010007728)	UNC93B1 (ENSUPAG00010007746) #12	ACY3 (ENSUPAG00010007756) #14	ENSUPAG00010007771	ENSUPAG00010007775	ENSUPAG00010007785 #18	NDUFV1 (ENSUPAG00010007803) #19	GSTP1 (ENSUPAG00010007817) #20	CABP2 (ENSUPAG00010007845) #21	CDK2AP2 (ENSUPAG00010007891) #22	PITPNM1 (ENSUPAG00010007905) #23	AIP (ENSUPAG00010007946) #24	TMEM134 (ENSUPAG00010007965) #25	CABP4 (ENSUPAG00010007974) #26	GPR152 (ENSUPAG00010007987) #27	CORO1B (ENSUPAG00010007990) #29	PTPRCAP (ENSUPAG00010008006) #30	RPS6KB2 (ENSUPAG00010008011) #31	CARNS1 (ENSUPAG00010008057) #32	TBC1D10C (ENSUPAG00010008076) #33	PPP1CA (ENSUPAG00010008103) #34	RAD9A (ENSUPAG00010008112) #35	CLCF1 (ENSUPAG00010008123)	POLD4 (ENSUPAG00010008127) #36	SSH3 (ENSUPAG00010008136) #37
Squirrel	MODERN SPECIES	199	ENSSTOG00000012277	KMT5B (ENSSTOG00000024331) #7	ENSSTOG00000019647	CHKA (ENSSTOG00000011503) #8	TCIRG1 (ENSSTOG00000024529) #9	NDUFS8 (ENSSTOG00000011500) #10	ALDH3B1 (ENSSTOG00000015155)	UNC93B1 (ENSSTOG00000011497) #12	ACY3 (ENSSTOG00000015148) #14	TBX10 (ENSSTOG00000011629) #15	ENSSTOG00000024208	ENSSTOG00000021128 #18	NDUFV1 (ENSSTOG00000005850) #19	GSTP1 (ENSSTOG00000025905) #20	CABP2 (ENSSTOG00000014876) #21	CDK2AP2 (ENSSTOG00000024042) #22	PITPNM1 (ENSSTOG00000027855) #23	AIP (ENSSTOG00000015721) #24	TMEM134 (ENSSTOG00000015718) #25	CABP4 (ENSSTOG00000019909) #26	GPR152 (ENSSTOG00000031517) #27	CORO1B (ENSSTOG00000015711) #29	PTPRCAP (ENSSTOG00000032084) #30	RPS6KB2 (ENSSTOG00000026088) #31	CARNS1 (ENSSTOG00000026187) #32	TBC1D10C (ENSSTOG00000015704) #33	PPP1CA (ENSSTOG00000019550) #34	RAD9A (ENSSTOG00000021365) #35	CLCF1 (ENSSTOG00000015702)	POLD4 (ENSSTOG00000015701) #36	SSH3 (ENSSTOG00000015693) #37
Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT01100000264273	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Guinea pig	MODERN SPECIES	42	ENSCPOG00000000621	KMT5B (ENSCPOG00000002147) #7	CHKA (ENSCPOG00000022236) #8	TCIRG1 (ENSCPOG00000001417) #9	NDUFS8 (ENSCPOG00000001416) #10	ALDH3B1 (ENSCPOG00000021502)	UNC93B1 (ENSCPOG00000026431) #12	ALDH3B2 (ENSCPOG00000002523) #13	ACY3 (ENSCPOG00000002519) #14	TBX10 (ENSCPOG00000032079) #15	ENSCPOG00000002514	ENSCPOG00000022649 #18	NDUFV1 (ENSCPOG00000006645) #19	GSTP1 (ENSCPOG00000020253) #20	CABP2 (ENSCPOG00000023151) #21	CDK2AP2 (ENSCPOG00000033165) #22	PITPNM1 (ENSCPOG00000011204) #23	AIP (ENSCPOG00000025197) #24	TMEM134 (ENSCPOG00000034721) #25	CABP4 (ENSCPOG00000038418) #26	GPR152 (ENSCPOG00000020561) #27	CORO1B (ENSCPOG00000010527) #29	PTPRCAP (ENSCPOG00000023825) #30	RPS6KB2 (ENSCPOG00000010518) #31	CARNS1 (ENSCPOG00000010514) #32	TBC1D10C (ENSCPOG00000011171) #33	PPP1CA (ENSCPOG00000032835) #34	RAD9A (ENSCPOG00000033699) #35	CLCF1 (ENSCPOG00000031948)	POLD4 (ENSCPOG00000039935) #36	SSH3 (ENSCPOG00000008616) #37
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Degu	MODERN SPECIES	59	ENSODEG00000017460 #7	CHKA (ENSODEG00000017808) #8	TCIRG1 (ENSODEG00000017607) #9	ENSODEG00000017577 #10	ALDH3B1 (ENSODEG00000017474)	UNC93B1 (ENSODEG00000017652) #12	ENSODEG00000017464	ALDH3B2 (ENSODEG00000017453) #13	ACY3 (ENSODEG00000017439) #14	TBX10 (ENSODEG00000017601) #15	ENSODEG00000017697	ENSODEG00000017660 #18	NDUFV1 (ENSODEG00000017535) #19	ENSODEG00000017726 #20	CABP2 (ENSODEG00000017525) #21	CDK2AP2 (ENSODEG00000017482) #22	ENSODEG00000017542 #23	ENSODEG00000017554 #24	ENSODEG00000017587 #25	CABP4 (ENSODEG00000017561) #26	GPR152 (ENSODEG00000017462) #27	ENSODEG00000017778 #29	PTPRCAP (ENSODEG00000017616) #30	RPS6KB2 (ENSODEG00000017566) #31	CARNS1 (ENSODEG00000017571) #32	TBC1D10C (ENSODEG00000017872) #33	ENSODEG00000017595 #34	RAD9A (ENSODEG00000017457) #35	CLCF1 (ENSODEG00000017639)	POLD4 (ENSODEG00000017608) #36	SSH3 (ENSODEG00000017507) #37
Long-tailed chinchilla	MODERN SPECIES	129	ENSCLAG00000017122	KMT5B (ENSCLAG00000016628) #7	CHKA (ENSCLAG00000014223) #8	TCIRG1 (ENSCLAG00000014792) #9	NDUFS8 (ENSCLAG00000017156) #10	ALDH3B1 (ENSCLAG00000016029)	UNC93B1 (ENSCLAG00000016729) #12	ALDH3B2 (ENSCLAG00000017296) #13	ACY3 (ENSCLAG00000016314) #14	TBX10 (ENSCLAG00000015667) #15	ENSCLAG00000016240	ENSCLAG00000016785 #18	NDUFV1 (ENSCLAG00000016746) #19	GSTP1 (ENSCLAG00000015548) #20	CABP2 (ENSCLAG00000015734) #21	CDK2AP2 (ENSCLAG00000014787) #22	ENSCLAG00000015015 #23	AIP (ENSCLAG00000016600) #24	TMEM134 (ENSCLAG00000016841) #25	CABP4 (ENSCLAG00000016497) #26	GPR152 (ENSCLAG00000016443) #27	CORO1B (ENSCLAG00000015993) #29	RPS6KB2 (ENSCLAG00000016408) #31	PTPRCAP (ENSCLAG00000016874) #30	CARNS1 (ENSCLAG00000016069) #32	TBC1D10C (ENSCLAG00000014250) #33	PPP1CA (ENSCLAG00000014515) #34	RAD9A (ENSCLAG00000014799) #35	CLCF1 (ENSCLAG00000016411)	POLD4 (ENSCLAG00000016804) #36	SSH3 (ENSCLAG00000016225) #37
Naked mole-rat female	MODERN SPECIES	14	TCIRG1 (ENSHGLG00000018395) #9	NDUFS8 (ENSHGLG00000009570) #10	ALDH3B1 (ENSHGLG00000015602)	UNC93B1 (ENSHGLG00000011769) #12	ALDH3B2 (ENSHGLG00000010052) #13	ACY3 (ENSHGLG00000015831) #14	TBX10 (ENSHGLG00000015945) #15	NUDT8 (ENSHGLG00000047808) #16	ENSHGLG00000018636 #18	ENSHGLG00000048694	NDUFV1 (ENSHGLG00000042428) #19	GSTP1 (ENSHGLG00000018697) #20	ENSHGLG00000043193	ENSHGLG00000011960	CABP2 (ENSHGLG00000006502) #21	CDK2AP2 (ENSHGLG00000008013) #22	PITPNM1 (ENSHGLG00000008671) #23	AIP (ENSHGLG00000010309) #24	TMEM134 (ENSHGLG00000046661)	CABP4 (ENSHGLG00000012191) #26	GPR152 (ENSHGLG00000020880) #27	CORO1B (ENSHGLG00000014004) #29	PTPRCAP (ENSHGLG00000038375) #30	RPS6KB2 (ENSHGLG00000011537) #31	CARNS1 (ENSHGLG00000015759) #32	TBC1D10C (ENSHGLG00000011863) #33	PPP1CA (ENSHGLG00000013028) #34	RAD9A (ENSHGLG00000013829) #35	CLCF1 (ENSHGLG00000009725)	POLD4 (ENSHGLG00000010576) #36	SSH3 (ENSHGLG00000011687) #37
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT01100000264273	ENSGT00940000163374	ENSGT00940000163889 #16	ENSGT00390000010641 #19	ENSGT00940000163435	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Eulipotyphla	ANCESTRAL SPECIES	1788																ENSGT00940000160334 #22	ENSGT00940000161522 #23
Hedgehog	MODERN SPECIES	1297																CDK2AP2 (ENSEEUG00000004767) #22	ENSEEUG00000004654 #23
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.e.a	ENSGT01100000264273	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT01100000264273	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Carnivora	ANCESTRAL SPECIES	7	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #13	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Felidae	ANCESTRAL SPECIES		ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Panthera	ANCESTRAL SPECIES	18	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Tiger	MODERN SPECIES	492															CABP2 (ENSPTIG00000017163) #21	CDK2AP2 (ENSPTIG00000016923) #22	PITPNM1 (ENSPTIG00000014649) #23	AIP (ENSPTIG00000014436) #24	ENSPTIG00000013619 #25	CABP4 (ENSPTIG00000012944) #26	ENSPTIG00000012585	ENSPTIG00000011991 #29	RPS6KB2 (ENSPTIG00000011233) #31	CARNS1 (ENSPTIG00000011037) #32	TBC1D10C (ENSPTIG00000010601) #33	PPP1CA (ENSPTIG00000009825) #34	RAD9A (ENSPTIG00000008690) #35	CLCF1 (ENSPTIG00000008383)	POLD4 (ENSPTIG00000007757) #36	SSH3 (ENSPTIG00000007418) #37
Panthera_a	ANCESTRAL SPECIES	18	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
lion	MODERN SPECIES	10				CHKA (ENSPLOG00000011481) #8	TCIRG1 (ENSPLOG00000011364) #9	NDUFS8 (ENSPLOG00000011271) #10	ENSPLOG00000011172 #11	UNC93B1 (ENSPLOG00000011063) #12	ALDH3B2 (ENSPLOG00000013293) #13	TBX10 (ENSPLOG00000013092) #15	ENSPLOG00000013043	ENSPLOG00000012919 #18	NDUFV1 (ENSPLOG00000012672) #19	ENSPLOG00000012523	CABP2 (ENSPLOG00000012338) #21	CDK2AP2 (ENSPLOG00000012271) #22	PITPNM1 (ENSPLOG00000012168) #23	AIP (ENSPLOG00000012104) #24	ENSPLOG00000011943	CABP4 (ENSPLOG00000011804) #26	GPR152 (ENSPLOG00000011768) #27	CORO1B (ENSPLOG00000011738) #29	PTPRCAP (ENSPLOG00000011683) #30	RPS6KB2 (ENSPLOG00000011644) #31	CARNS1 (ENSPLOG00000011427) #32	TBC1D10C (ENSPLOG00000011370) #33	PPP1CA (ENSPLOG00000011253) #34	RAD9A (ENSPLOG00000011138) #35	CLCF1 (ENSPLOG00000011060)	POLD4 (ENSPLOG00000010990) #36	SSH3 (ENSPLOG00000010812) #37
leopard	MODERN SPECIES	64	KMT5B (ENSPPRG00000002092) #7	CHKA (ENSPPRG00000003923) #8	ENSPPRG00000004626 #9	ENSPPRG00000004705 #9	NDUFS8 (ENSPPRG00000004781) #10	ENSPPRG00000005565 #11	UNC93B1 (ENSPPRG00000006045) #12	ALDH3B2 (ENSPPRG00000006205) #13	TBX10 (ENSPPRG00000006221) #15	ENSPPRG00000006340	ENSPPRG00000006725 #18	NDUFV1 (ENSPPRG00000006947) #19	ENSPPRG00000006958	ENSPPRG00000007615	CABP2 (ENSPPRG00000007774) #21	CDK2AP2 (ENSPPRG00000007878) #22	PITPNM1 (ENSPPRG00000008543) #23	AIP (ENSPPRG00000008664) #24	TMEM134 (ENSPPRG00000008976) #25	CABP4 (ENSPPRG00000009084) #26	GPR152 (ENSPPRG00000009357) #27	CORO1B (ENSPPRG00000009537) #29	PTPRCAP (ENSPPRG00000010851) #30	RPS6KB2 (ENSPPRG00000011013) #31	CARNS1 (ENSPPRG00000011289) #32	TBC1D10C (ENSPPRG00000011477) #33	PPP1CA (ENSPPRG00000011753) #34	RAD9A (ENSPPRG00000011858) #35	CLCF1 (ENSPPRG00000012005)	POLD4 (ENSPPRG00000012466) #36	SSH3 (ENSPPRG00000013107) #37
Cat	MODERN SPECIES	241	PPP6R3 (ENSFCAG00000005076)	LRP5 (ENSFCAG00000012666)	ENSFCAG00000042941	KMT5B (ENSFCAG00000009067) #7	CHKA (ENSFCAG00000006219) #8	TCIRG1 (ENSFCAG00000002995) #9	NDUFS8 (ENSFCAG00000002988) #10	ENSFCAG00000026709 #11	UNC93B1 (ENSFCAG00000002986) #12	ENSFCAG00000044091 #13	TBX10 (ENSFCAG00000001760) #15	ENSFCAG00000022755 #18	NDUFV1 (ENSFCAG00000001757) #19	GSTP1 (ENSFCAG00000001755)	CABP2 (ENSFCAG00000001754) #21	CDK2AP2 (ENSFCAG00000042271) #22	PITPNM1 (ENSFCAG00000001751) #23	ENSFCAG00000052433	CABP4 (ENSFCAG00000003398) #26	AIP (ENSFCAG00000001749) #24	TMEM134 (ENSFCAG00000031246) #27	CORO1B (ENSFCAG00000003396) #29	PTPRCAP (ENSFCAG00000045093) #30	RPS6KB2 (ENSFCAG00000003395) #31	CARNS1 (ENSFCAG00000003394) #32	PPP1CA (ENSFCAG00000028502) #34	RAD9A (ENSFCAG00000003391) #35	CLCF1 (ENSFCAG00000030466)	POLD4 (ENSFCAG00000026317) #36	SSH3 (ENSFCAG00000003389) #37	ANKRD13D (ENSFCAG00000003388)
Caniformia	ANCESTRAL SPECIES	21	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049.f #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #13	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Caniformia_b	ANCESTRAL SPECIES	19	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049.f #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #13	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Ursidae	ANCESTRAL SPECIES	2	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049.f #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #13	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125.b	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00940000167974.a	ENSGT00950000185478	ENSGT00940000161468.b #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36
Ursus	ANCESTRAL SPECIES	21	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049.f #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00940000163374	ENSGT00940000163889 #16	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125.b.b.b	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00940000167974.a	ENSGT00390000011766 #25	ENSGT00940000161468.b #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
American black bear	MODERN SPECIES	686														ENSUAMG00000005646	CABP2 (ENSUAMG00000005653) #21	CDK2AP2 (ENSUAMG00000005659) #22	PITPNM1 (ENSUAMG00000005674) #23	AIP (ENSUAMG00000005812) #24	ENSUAMG00000005815	TMEM134 (ENSUAMG00000005817) #25	CABP4 (ENSUAMG00000005819) #26	GPR152 (ENSUAMG00000005821) #27	CORO1B (ENSUAMG00000005827) #29	RPS6KB2 (ENSUAMG00000005838) #31	CARNS1 (ENSUAMG00000005842) #32	TBC1D10C (ENSUAMG00000005844) #33	ENSUAMG00000005846 #34	ENSUAMG00000005849 #35	CLCF1 (ENSUAMG00000005852)	ENSUAMG00000005854 #36	SSH3 (ENSUAMG00000005856) #37
Polar bear	MODERN SPECIES	328	ENSUMAG00000013275	KMT5B (ENSUMAG00000013196) #7	CHKA (ENSUMAG00000013148) #8	ENSUMAG00000013132 #9	NDUFS8 (ENSUMAG00000013128) #10	ENSUMAG00000013125	UNC93B1 (ENSUMAG00000013118) #12	ENSUMAG00000013104 #13	ENSUMAG00000013092	NUDT8 (ENSUMAG00000013078) #16	ENSUMAG00000013065 #18	NDUFV1 (ENSUMAG00000013061) #19	ENSUMAG00000013053	ENSUMAG00000013046	CABP2 (ENSUMAG00000013041) #21	CDK2AP2 (ENSUMAG00000013035) #22	PITPNM1 (ENSUMAG00000012967) #23	AIP (ENSUMAG00000012949) #24	ENSUMAG00000012948	CABP4 (ENSUMAG00000012943) #26	CORO1B (ENSUMAG00000012896) #29	RPS6KB2 (ENSUMAG00000012544) #31	TBC1D10C (ENSUMAG00000012480) #33	PPP1CA (ENSUMAG00000012448) #34	RAD9A (ENSUMAG00000012428) #35	CLCF1 (ENSUMAG00000012426)	POLD4 (ENSUMAG00000012424) #36	SSH3 (ENSUMAG00000012376) #37	ANKRD13D (ENSUMAG00000012336)	GRK2 (ENSUMAG00000011985)	KDM2A (ENSUMAG00000011947)
Giant Panda	MODERN SPECIES	7	ENSAMEG00000030515	KMT5B (ENSAMEG00000001298) #7	CHKA (ENSAMEG00000001272) #8	TCIRG1 (ENSAMEG00000001230) #9	NDUFS8 (ENSAMEG00000001217) #10	ALDH3B1 (ENSAMEG00000001158)	UNC93B1 (ENSAMEG00000001141) #12	ENSAMEG00000031445	ALDH3B2 (ENSAMEG00000029412) #13	TBX10 (ENSAMEG00000001098) #15	ENSAMEG00000027070	ENSAMEG00000001078 #18	NDUFV1 (ENSAMEG00000001049) #19	ENSAMEG00000001020	CABP2 (ENSAMEG00000001006) #21	CDK2AP2 (ENSAMEG00000001002) #22	PITPNM1 (ENSAMEG00000000948) #23	AIP (ENSAMEG00000000937) #24	ENSAMEG00000028957	ENSAMEG00000026647	CABP4 (ENSAMEG00000000919) #26	GPR152 (ENSAMEG00000000918) #27	CORO1B (ENSAMEG00000000857) #29	PTPRCAP (ENSAMEG00000000855) #30	RPS6KB2 (ENSAMEG00000000822) #31	ENSAMEG00000000816	TBC1D10C (ENSAMEG00000000778) #33	PPP1CA (ENSAMEG00000000758) #34	CLCF1 (ENSAMEG00000000739)	POLD4 (ENSAMEG00000000732) #36	RAD9A (ENSAMEG00000000743) #35
Mustelinae	ANCESTRAL SPECIES	3	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049.f #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #13	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
American mink	MODERN SPECIES	104	ENSNVIG00000012636 #9	ENSNVIG00000012648 #9	ENSNVIG00000012658 #9	NDUFS8 (ENSNVIG00000012663) #10	ENSNVIG00000012672	UNC93B1 (ENSNVIG00000012714) #12	ENSNVIG00000012729	ALDH3B2 (ENSNVIG00000012740) #13	TBX10 (ENSNVIG00000012771) #15	ENSNVIG00000012787 #18	ENSNVIG00000012818	NDUFV1 (ENSNVIG00000012828) #19	ENSNVIG00000012875	ENSNVIG00000012900	CABP2 (ENSNVIG00000012930) #21	CDK2AP2 (ENSNVIG00000012971) #22	PITPNM1 (ENSNVIG00000012984) #23	AIP (ENSNVIG00000013080) #24	TMEM134 (ENSNVIG00000013113) #25	CABP4 (ENSNVIG00000013152) #26	GPR152 (ENSNVIG00000013164) #27	CORO1B (ENSNVIG00000013189) #29	PTPRCAP (ENSNVIG00000013201) #30	RPS6KB2 (ENSNVIG00000013220) #31	CARNS1 (ENSNVIG00000013255) #32	TBC1D10C (ENSNVIG00000013336) #33	ENSNVIG00000013346 #34	RAD9A (ENSNVIG00000013356) #35	CLCF1 (ENSNVIG00000013368)	POLD4 (ENSNVIG00000013376) #36	SSH3 (ENSNVIG00000013393) #37
Canidae	ANCESTRAL SPECIES	13	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049.e.b #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.e.a.b.a.b	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Red fox	MODERN SPECIES	49	CUNH11orf24 (ENSVVUG00000010101)	KMT5B (ENSVVUG00000010104) #7	ENSVVUG00000010120	CHKA (ENSVVUG00000010123) #8	TCIRG1 (ENSVVUG00000010160) #9	ENSVVUG00000010174 #10	ENSVVUG00000010184 #11	UNC93B1 (ENSVVUG00000010187) #12	ENSVVUG00000010192	NUDT8 (ENSVVUG00000010211) #16	ENSVVUG00000010218 #18	NDUFV1 (ENSVVUG00000010224) #19	ENSVVUG00000010240	ENSVVUG00000010271	CABP2 (ENSVVUG00000010286) #21	CDK2AP2 (ENSVVUG00000010306) #22	PITPNM1 (ENSVVUG00000010318) #23	AIP (ENSVVUG00000010343) #24	TMEM134 (ENSVVUG00000010350) #25	CABP4 (ENSVVUG00000010355) #26	GPR152 (ENSVVUG00000010367) #27	CORO1B (ENSVVUG00000010374) #29	PTPRCAP (ENSVVUG00000010384) #30	RPS6KB2 (ENSVVUG00000010392) #31	CARNS1 (ENSVVUG00000010408) #32	TBC1D10C (ENSVVUG00000010411) #33	PPP1CA (ENSVVUG00000010423) #34	RAD9A (ENSVVUG00000010426) #35	CLCF1 (ENSVVUG00000010439)	POLD4 (ENSVVUG00000010444) #36	SSH3 (ENSVVUG00000010455) #37
Canis_lupus	ANCESTRAL SPECIES	7	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049.e.b #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.e.a.b.a.b	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Dingo	MODERN SPECIES	36	ENSCAFG00020002089	KMT5B (ENSCAFG00020001997) #7	CHKA (ENSCAFG00020001949) #8	TCIRG1 (ENSCAFG00020001934) #9	ENSCAFG00020001910 #10	ENSCAFG00020001904 #11	UNC93B1 (ENSCAFG00020001896) #12	ALDH3B2 (ENSCAFG00020001840) #13	TBX10 (ENSCAFG00020001823) #15	NUDT8 (ENSCAFG00020001816) #16	ENSCAFG00020001779 #18	ENSCAFG00020001698 #19	ENSCAFG00020001675	ENSCAFG00020001669	CABP2 (ENSCAFG00020001633) #21	CDK2AP2 (ENSCAFG00020001620) #22	PITPNM1 (ENSCAFG00020001608) #23	AIP (ENSCAFG00020001604) #24	ENSCAFG00020001594	CABP4 (ENSCAFG00020001570) #26	GPR152 (ENSCAFG00020001563) #27	CORO1B (ENSCAFG00020001558) #29	PTPRCAP (ENSCAFG00020001549) #30	RPS6KB2 (ENSCAFG00020001528) #31	CARNS1 (ENSCAFG00020001494) #32	TBC1D10C (ENSCAFG00020001477) #33	PPP1CA (ENSCAFG00020001475) #34	RAD9A (ENSCAFG00020001462) #35	CLCF1 (ENSCAFG00020001441)	POLD4 (ENSCAFG00020001435) #36	SSH3 (ENSCAFG00020001411) #37
Laurasiatheria_c	ANCESTRAL SPECIES	20	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT01100000264273	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Chiroptera	ANCESTRAL SPECIES	14	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Microchiroptera	ANCESTRAL SPECIES	13	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Microbat	MODERN SPECIES	1351	PPP6R3 (ENSMLUG00000013121)	LRP5 (ENSMLUG00000001206)	KMT5B (ENSMLUG00000008196) #7	CHKA (ENSMLUG00000017614) #8	TCIRG1 (ENSMLUG00000017612) #9	NDUFS8 (ENSMLUG00000017611) #10	ALDH3B1 (ENSMLUG00000029407)	UNC93B1 (ENSMLUG00000017610) #12	ALDH3B2 (ENSMLUG00000028367) #13	ENSMLUG00000011588 #14	TBX10 (ENSMLUG00000011576) #15	ENSMLUG00000026150 #18	NDUFV1 (ENSMLUG00000011539) #19	GSTP1 (ENSMLUG00000011529) #20	CABP2 (ENSMLUG00000011504) #21	CDK2AP2 (ENSMLUG00000011488) #22	PITPNM1 (ENSMLUG00000011222) #23	AIP (ENSMLUG00000011271) #24	TMEM134 (ENSMLUG00000005143) #25	CABP4 (ENSMLUG00000005139) #26	GPR152 (ENSMLUG00000022557) #27	CORO1B (ENSMLUG00000025612) #29	PTPRCAP (ENSMLUG00000029066) #30	ENSMLUG00000005128 #31	ENSMLUG00000005122	TBC1D10C (ENSMLUG00000005115) #33	PPP1CA (ENSMLUG00000005112) #34	RAD9A (ENSMLUG00000005102) #35	CLCF1 (ENSMLUG00000008928)	POLD4 (ENSMLUG00000005095) #36	SSH3 (ENSMLUG00000012082) #37
Greater horseshoe bat	MODERN SPECIES	2	KMT5B (ENSRFEG00010021206) #7	CHKA (ENSRFEG00010021236) #8	TCIRG1 (ENSRFEG00010021289) #9	NDUFS8 (ENSRFEG00010021301) #10	ENSRFEG00010021317 #13	UNC93B1 (ENSRFEG00010021346) #12	ENSRFEG00010021357 #13	ACY3 (ENSRFEG00010021361) #14	TBX10 (ENSRFEG00010021376) #15	ENSRFEG00010021387	ENSRFEG00010021394 #18	NDUFV1 (ENSRFEG00010021407) #19	ENSRFEG00010021433 #20	ENSRFEG00010021451	CABP2 (ENSRFEG00010021473) #21	CDK2AP2 (ENSRFEG00010021494) #22	PITPNM1 (ENSRFEG00010021507) #23	AIP (ENSRFEG00010021536) #24	TMEM134 (ENSRFEG00010021554) #25	CABP4 (ENSRFEG00010021584) #26	GPR152 (ENSRFEG00010021609) #27	CORO1B (ENSRFEG00010021624) #29	PTPRCAP (ENSRFEG00010021642) #30	RPS6KB2 (ENSRFEG00010021650) #31	CARNS1 (ENSRFEG00010021672) #32	TBC1D10C (ENSRFEG00010000562) #33	PPP1CA (ENSRFEG00010000614) #34	RAD9A (ENSRFEG00010000657) #35	CLCF1 (ENSRFEG00010000699)	POLD4 (ENSRFEG00010000741) #36	SSH3 (ENSRFEG00010000770) #37
Megabat	MODERN SPECIES	2353										ACY3 (ENSPVAG00000008593) #14	ENSPVAG00000008592	ENSPVAG00000008591	NDUFV1 (ENSPVAG00000008590) #19	ENSPVAG00000008586	CABP2 (ENSPVAG00000008584) #21	CDK2AP2 (ENSPVAG00000008582) #22	PITPNM1 (ENSPVAG00000008581) #23	AIP (ENSPVAG00000008580) #24	TMEM134 (ENSPVAG00000008578) #25	CABP4 (ENSPVAG00000008576) #26	CORO1B (ENSPVAG00000008571) #29	RPS6KB2 (ENSPVAG00000008565) #31	ENSPVAG00000008564 #32	TBC1D10C (ENSPVAG00000008561) #33	PPP1CA (ENSPVAG00000008557) #34	RAD9A (ENSPVAG00000008553) #35	CLCF1 (ENSPVAG00000008552)	POLD4 (ENSPVAG00000008550) #36	SSH3 (ENSPVAG00000008548) #37	ANKRD13D (ENSPVAG00000008545)	GRK2 (ENSPVAG00000008543)
Equus	ANCESTRAL SPECIES	11	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.e.b	ENSGT01100000264273	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Horse	MODERN SPECIES	3	LRP5 (ENSECAG00000013180)	C12H11orf24 (ENSECAG00000028930)	KMT5B (ENSECAG00000012952) #7	CHKA (ENSECAG00000011539) #8	TCIRG1 (ENSECAG00000010196) #9	NDUFS8 (ENSECAG00000010175) #10	ALDH3B1 (ENSECAG00000007907) #11	UNC93B1 (ENSECAG00000007813) #12	ALDH3B2 (ENSECAG00000000896) #13	TBX10 (ENSECAG00000022406) #15	DOC2G (ENSECAG00000022087) #18	ENSECAG00000054975	NDUFV1 (ENSECAG00000021477) #19	ENSECAG00000020462	CABP2 (ENSECAG00000020097) #21	CDK2AP2 (ENSECAG00000020079) #22	PITPNM1 (ENSECAG00000017776) #23	AIP (ENSECAG00000017167) #24	TMEM134 (ENSECAG00000016857) #25	CABP4 (ENSECAG00000016408) #26	GPR152 (ENSECAG00000016385) #27	CORO1B (ENSECAG00000014882) #29	PTPRCAP (ENSECAG00000014875) #30	RPS6KB2 (ENSECAG00000012221) #31	CARNS1 (ENSECAG00000012116) #32	PPP1CA (ENSECAG00000010532) #34	TBC1D10C (ENSECAG00000012029) #33	RAD9A (ENSECAG00000010129) #35	CLCF1 (ENSECAG00000010091)	ENSECAG00000010008 #36	SSH3 (ENSECAG00000009653) #37
Donkey	MODERN SPECIES	21	CHKA (ENSEASG00005006007) #8	TCIRG1 (ENSEASG00005006001) #9	NDUFS8 (ENSEASG00005005999) #10	ENSEASG00005005998 #11	UNC93B1 (ENSEASG00005005996) #12	ENSEASG00005034466	ALDH3B2 (ENSEASG00005005982) #13	TBX10 (ENSEASG00005005973) #15	ENSEASG00005005969	ENSEASG00005005966 #18	NDUFV1 (ENSEASG00005005962) #19	ENSEASG00005026638	ENSEASG00005005960	ENSEASG00005005953	CABP2 (ENSEASG00005005950) #21	CDK2AP2 (ENSEASG00005005947) #22	PITPNM1 (ENSEASG00005005939) #23	AIP (ENSEASG00005005936) #24	TMEM134 (ENSEASG00005035157) #25	CABP4 (ENSEASG00005005930) #26	GPR152 (ENSEASG00005005928) #27	CORO1B (ENSEASG00005005926) #29	PTPRCAP (ENSEASG00005005924) #30	RPS6KB2 (ENSEASG00005005920) #31	CARNS1 (ENSEASG00005005916) #32	TBC1D10C (ENSEASG00005005914) #33	PPP1CA (ENSEASG00005005876) #34	ENSEASG00005005863 #35	CLCF1 (ENSEASG00005030157)	ENSEASG00005028320 #36	SSH3 (ENSEASG00005005855) #37
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.e.a	ENSGT01100000264273	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Suina	ANCESTRAL SPECIES	14	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.e.a	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Pig	MODERN SPECIES	10	ENSSSCG00000012886	KMT5B (ENSSSCG00000031459) #7	CHKA (ENSSSCG00000012889) #8	TCIRG1 (ENSSSCG00000012890) #9	NDUFS8 (ENSSSCG00000037455) #10	ENSSSCG00000028501 #11	UNC93B1 (ENSSSCG00000012893) #12	ALDH3B2 (ENSSSCG00000026349) #13	TBX10 (ENSSSCG00000034410) #15	ENSSSCG00000035645	ENSSSCG00000052603 #18	NDUFV1 (ENSSSCG00000012896) #19	ENSSSCG00000032003	ENSSSCG00000060071	CABP2 (ENSSSCG00000020764) #21	CDK2AP2 (ENSSSCG00000012902) #22	PITPNM1 (ENSSSCG00000012903) #23	AIP (ENSSSCG00000062981) #24	TMEM134 (ENSSSCG00000012905) #25	CABP4 (ENSSSCG00000012906) #26	GPR152 (ENSSSCG00000059139) #27	CORO1B (ENSSSCG00000012920) #29	PTPRCAP (ENSSSCG00000012909) #30	RPS6KB2 (ENSSSCG00000012910) #31	CARNS1 (ENSSSCG00000012911) #32	TBC1D10C (ENSSSCG00000012912) #33	PPP1CA (ENSSSCG00000012913) #34	RAD9A (ENSSSCG00000012914) #35	CLCF1 (ENSSSCG00000012915)	POLD4 (ENSSSCG00000012916) #36	SSH3 (ENSSSCG00000027956) #37
Chacoan peccary	MODERN SPECIES	921	ENSCWAG00000006195	KMT5B (ENSCWAG00000006216) #7	CHKA (ENSCWAG00000006285) #8	TCIRG1 (ENSCWAG00000006382) #9	NDUFS8 (ENSCWAG00000006464) #10	ENSCWAG00000006537 #11	UNC93B1 (ENSCWAG00000006584) #12	ALDH3B2 (ENSCWAG00000006631) #13	TBX10 (ENSCWAG00000006811) #15	ENSCWAG00000006858	ENSCWAG00000006879 #18	NDUFV1 (ENSCWAG00000006939) #19	ENSCWAG00000007036	ENSCWAG00000007049	CABP2 (ENSCWAG00000007074) #21	CDK2AP2 (ENSCWAG00000007150) #22	PITPNM1 (ENSCWAG00000007166) #23	AIP (ENSCWAG00000007192) #24	TMEM134 (ENSCWAG00000007220) #25	CABP4 (ENSCWAG00000007263) #26	GPR152 (ENSCWAG00000007292) #27	CORO1B (ENSCWAG00000007304) #29	PTPRCAP (ENSCWAG00000007330) #30	RPS6KB2 (ENSCWAG00000007341) #31	CARNS1 (ENSCWAG00000007375) #32	TBC1D10C (ENSCWAG00000007510) #33	ENSCWAG00000007570 #34	RAD9A (ENSCWAG00000007635) #35	CLCF1 (ENSCWAG00000007645)	POLD4 (ENSCWAG00000007670) #36	ENSCWAG00000007703 #37
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.e.a	ENSGT01100000264273	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Camelidae	ANCESTRAL SPECIES	18	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #13	ENSGT00940000163374.g	ENSGT00940000163889 #16	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.e.a	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37	ENSGT00950000182928.A.a.b
Alpaca	MODERN SPECIES	1782																CDK2AP2 (ENSVPAG00000004070) #22
Arabian camel	MODERN SPECIES	1	KMT5B (ENSCDRG00005008575) #7	CHKA (ENSCDRG00005008677) #8	TCIRG1 (ENSCDRG00005009035) #9	NDUFS8 (ENSCDRG00005009196) #10	ALDH3B1 (ENSCDRG00005009325)	UNC93B1 (ENSCDRG00005009668) #12	ENSCDRG00005009764	ALDH3B2 (ENSCDRG00005009823) #13	ENSCDRG00005009949	NUDT8 (ENSCDRG00005009988) #16	ENSCDRG00005010025 #18	NDUFV1 (ENSCDRG00005010077) #19	GSTP1-1 (ENSCDRG00005010333)	ENSCDRG00005010431	CABP2 (ENSCDRG00005010465) #21	CDK2AP2 (ENSCDRG00005010661) #22	PITPNM1 (ENSCDRG00005010686) #23	AIP (ENSCDRG00005010788) #24	ENSCDRG00005010854 #25	CABP4 (ENSCDRG00005011171) #26	GPR152 (ENSCDRG00005011272) #27	CORO1B (ENSCDRG00005011291) #29	RPS6KB2 (ENSCDRG00005011373) #31	CARNS1 (ENSCDRG00005011445) #32	TBC1D10C (ENSCDRG00005011591) #33	PPP1CA (ENSCDRG00005011737) #34	RAD9A (ENSCDRG00005011885) #35	CLCF1 (ENSCDRG00005011923)	POLD4 (ENSCDRG00005011964) #36	SSH3 (ENSCDRG00005012079) #37	ANKRD13D (ENSCDRG00005012263)
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT01100000264273	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Cetacea	ANCESTRAL SPECIES	4	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Blue whale	MODERN SPECIES		ENSBMSG00010000549	B3GALT2 (ENSBMSG00010000463)	CDC73 (ENSBMSG00010000363)	GLRX2 (ENSBMSG00010000297)	RO60 (ENSBMSG00010000248)	ENSBMSG00010000189	ENSBMSG00010000156	RGS2 (ENSBMSG00010000121)	RGS13 (ENSBMSG00010000086)	RGS1 (ENSBMSG00010000063)	RGS21 (ENSBMSG00010000034)	RGS18 (ENSBMSG00010000021)	ENSBMSG00010004812	ENSBMSG00010004804	BRINP3 (ENSBMSG00010004798)	ENSBMSG00010004791 #22	ENSBMSG00010004763	ENSBMSG00010004741	KCTD3 (ENSBMSG00010004710)	USH2A (ENSBMSG00010004301)	ESRRG (ENSBMSG00010004215)	GPATCH2 (ENSBMSG00010004185)	SPATA17 (ENSBMSG00010004163)	RRP15 (ENSBMSG00010004149)	TGFB2 (ENSBMSG00010004097)	LYPLAL1 (ENSBMSG00010004063)	SLC30A10 (ENSBMSG00010004048)	EPRS1 (ENSBMSG00010004027)	BPNT1 (ENSBMSG00010003971)	IARS2 (ENSBMSG00010003944)	RAB3GAP2 (ENSBMSG00010003907)
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Sperm whale	MODERN SPECIES	97														ENSPCTG00005022609	CABP2 (ENSPCTG00005022608) #21	CDK2AP2 (ENSPCTG00005022607) #22	PITPNM1 (ENSPCTG00005022605) #23	AIP (ENSPCTG00005022604) #24	TMEM134 (ENSPCTG00005022602) #25	CABP4 (ENSPCTG00005022601) #26	GPR152 (ENSPCTG00005022600) #27	CORO1B (ENSPCTG00005022599) #29	PTPRCAP (ENSPCTG00005022598) #30	RPS6KB2 (ENSPCTG00005022597) #31	CARNS1 (ENSPCTG00005022594) #32	TBC1D10C (ENSPCTG00005022589) #33	PPP1CA (ENSPCTG00005022585) #34	RAD9A (ENSPCTG00005022584) #35
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00940000156431.jb #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Dolphin	MODERN SPECIES	1942															CABP2 (ENSTTRG00000013269) #21	CDK2AP2 (ENSTTRG00000013268) #22	PITPNM1 (ENSTTRG00000013267) #23	AIP (ENSTTRG00000013265) #24	TMEM134 (ENSTTRG00000013264) #25	CABP4 (ENSTTRG00000013261) #26	GPR152 (ENSTTRG00000013260) #27	CORO1B (ENSTTRG00000013257) #29	PTPRCAP (ENSTTRG00000013255) #30	RPS6KB2 (ENSTTRG00000013251) #31	ENSTTRG00000013249 #32	TBC1D10C (ENSTTRG00000013242) #33	PPP1CA (ENSTTRG00000013233) #34	RAD9A (ENSTTRG00000013208) #35
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00940000153377.B	ENSGT00940000156431.jb #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Vaquita	MODERN SPECIES	19	LRP5 (ENSPSNG00000013733)	ENSPSNG00000013665	KMT5B (ENSPSNG00000013500) #7	CHKA (ENSPSNG00000013362) #8	TCIRG1 (ENSPSNG00000013176) #9	NDUFS8 (ENSPSNG00000013024) #10	ENSPSNG00000012832 #11	UNC93B1 (ENSPSNG00000012748) #12	ALDH3B2 (ENSPSNG00000012373) #13	TBX10 (ENSPSNG00000012218) #15	ENSPSNG00000012192	NDUFV1 (ENSPSNG00000012099) #19	ENSPSNG00000012038	ENSPSNG00000011890	CABP2 (ENSPSNG00000011691) #21	CDK2AP2 (ENSPSNG00000011634) #22	PITPNM1 (ENSPSNG00000011535) #23	AIP (ENSPSNG00000011463) #24	TMEM134 (ENSPSNG00000011362) #25	CABP4 (ENSPSNG00000011189) #26	GPR152 (ENSPSNG00000011149) #27	CORO1B (ENSPSNG00000011096) #29	PTPRCAP (ENSPSNG00000011039) #30	RPS6KB2 (ENSPSNG00000010990) #31	CARNS1 (ENSPSNG00000010738) #32	TBC1D10C (ENSPSNG00000010641) #33	PPP1CA (ENSPSNG00000010502) #34	RAD9A (ENSPSNG00000010444) #35	CLCF1 (ENSPSNG00000010372)	POLD4 (ENSPSNG00000010304) #36	SSH3 (ENSPSNG00000010029) #37
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00940000156431.jb #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Narwhal	MODERN SPECIES	314	ENSMMNG00015020790	KMT5B (ENSMMNG00015020754) #7	CHKA (ENSMMNG00015020690) #8	TCIRG1 (ENSMMNG00015020611) #9	NDUFS8 (ENSMMNG00015020550) #10	ALDH3B1 (ENSMMNG00015020460)	UNC93B1 (ENSMMNG00015020395) #12	ALDH3B2 (ENSMMNG00015020368) #13	TBX10 (ENSMMNG00015020328) #15	ENSMMNG00015020305	ENSMMNG00015020291 #18	NDUFV1 (ENSMMNG00015020258) #19	ENSMMNG00015020229	ENSMMNG00015020200	CABP2 (ENSMMNG00015020136) #21	CDK2AP2 (ENSMMNG00015020090) #22	PITPNM1 (ENSMMNG00015020033) #23	AIP (ENSMMNG00015019982) #24	TMEM134 (ENSMMNG00015019872) #25	CABP4 (ENSMMNG00015019821) #26	GPR152 (ENSMMNG00015019803) #27	CORO1B (ENSMMNG00015019765) #29	PTPRCAP (ENSMMNG00015019739) #30	RPS6KB2 (ENSMMNG00015019710) #31	CARNS1 (ENSMMNG00015019617) #32	TBC1D10C (ENSMMNG00015019565) #33	PPP1CA (ENSMMNG00015019512) #34	RAD9A (ENSMMNG00015019448) #35	CLCF1 (ENSMMNG00015019402)	POLD4 (ENSMMNG00015019361) #36	SSH3 (ENSMMNG00015019247) #37
Beluga whale	MODERN SPECIES	7	ENSDLEG00000007238	KMT5B (ENSDLEG00000007251) #7	CHKA (ENSDLEG00000007265) #8	TCIRG1 (ENSDLEG00000007283) #9	NDUFS8 (ENSDLEG00000007301) #10	ENSDLEG00000007316 #11	UNC93B1 (ENSDLEG00000007327) #12	ENSDLEG00000007341 #13	TBX10 (ENSDLEG00000007345) #15	ENSDLEG00000007357	ENSDLEG00000007368 #18	NDUFV1 (ENSDLEG00000007370) #19	ENSDLEG00000007379	ENSDLEG00000007392	CABP2 (ENSDLEG00000007398) #21	CDK2AP2 (ENSDLEG00000007407) #22	PITPNM1 (ENSDLEG00000007424) #23	AIP (ENSDLEG00000007462) #24	TMEM134 (ENSDLEG00000007472) #25	CABP4 (ENSDLEG00000007479) #26	GPR152 (ENSDLEG00000007487) #27	CORO1B (ENSDLEG00000007489) #29	RPS6KB2 (ENSDLEG00000007496) #31	PTPRCAP (ENSDLEG00000007502) #30	CARNS1 (ENSDLEG00000007504) #32	TBC1D10C (ENSDLEG00000007507) #33	PPP1CA (ENSDLEG00000000041) #34	RAD9A (ENSDLEG00000000070) #35	CLCF1 (ENSDLEG00000000088)	ENSDLEG00000000120 #36	SSH3 (ENSDLEG00000000182) #37
Pecora	ANCESTRAL SPECIES	13	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #13	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT01100000264273	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Yarkand deer	MODERN SPECIES	11	KMT5B (ENSCHYG00000003849) #7	CHKA (ENSCHYG00000003799) #8	TCIRG1 (ENSCHYG00000003734) #9	NDUFS8 (ENSCHYG00000003690) #10	ALDH3B1 (ENSCHYG00000003612)	UNC93B1 (ENSCHYG00000003557) #12	ENSCHYG00000003548	ALDH3B2 (ENSCHYG00000003514) #13	TBX10 (ENSCHYG00000003486) #15	ENSCHYG00000003477	ENSCHYG00000003458 #18	NDUFV1 (ENSCHYG00000003440) #19	ENSCHYG00000003427	ENSCHYG00000003387	CABP2 (ENSCHYG00000003335) #21	CDK2AP2 (ENSCHYG00000003302) #22	PITPNM1 (ENSCHYG00000003166) #23	AIP (ENSCHYG00000003119) #24	TMEM134 (ENSCHYG00000003047) #25	CABP4 (ENSCHYG00000003019) #26	GPR152 (ENSCHYG00000003011) #27	CORO1B (ENSCHYG00000002991) #29	PTPRCAP (ENSCHYG00000002984) #30	RPS6KB2 (ENSCHYG00000002967) #31	CARNS1 (ENSCHYG00000002924) #32	TBC1D10C (ENSCHYG00000002870) #33	PPP1CA (ENSCHYG00000002815) #34	RAD9A (ENSCHYG00000002779) #35	CLCF1 (ENSCHYG00000002752)	ENSCHYG00000002737 #36	ENSCHYG00000002718
Percora_a	ANCESTRAL SPECIES	16	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #13	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT01100000264273	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Siberian musk deer	MODERN SPECIES	1226	KMT5B (ENSMMSG00000023533) #7	CHKA (ENSMMSG00000023562) #8	TCIRG1 (ENSMMSG00000023600) #9	NDUFS8 (ENSMMSG00000023617) #10	ENSMMSG00000023640 #11	UNC93B1 (ENSMMSG00000023668) #12	ALDH3B2 (ENSMMSG00000023685) #13	TBX10 (ENSMMSG00000023697) #15	ENSMMSG00000023700	ENSMMSG00000023706	ENSMMSG00000023708 #18	NDUFV1 (ENSMMSG00000023713) #19	ENSMMSG00000023730	ENSMMSG00000023744	CABP2 (ENSMMSG00000023763) #21	CDK2AP2 (ENSMMSG00000023774) #22	PITPNM1 (ENSMMSG00000023779) #23	AIP (ENSMMSG00000023787) #24	ENSMMSG00000023795 #25	CABP4 (ENSMMSG00000023807) #26	GPR152 (ENSMMSG00000023822) #27	CORO1B (ENSMMSG00000023829) #29	PTPRCAP (ENSMMSG00000023838) #30	RPS6KB2 (ENSMMSG00000023844) #31	CARNS1 (ENSMMSG00000023862) #32	TBC1D10C (ENSMMSG00000023882) #33	PPP1CA (ENSMMSG00000023894) #34	RAD9A (ENSMMSG00000023915) #35	CLCF1 (ENSMMSG00000023932)	POLD4 (ENSMMSG00000023941) #36	SSH3 (ENSMMSG00000023947) #37
Bovidae	ANCESTRAL SPECIES	16	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #13	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT01100000264273	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Caprinae	ANCESTRAL SPECIES	20	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #13	ENSGT00940000154816.a.a #15	ENSGT00940000163889 #16	ENSGT00940000163374.g	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00990000203796	ENSGT00960000189182	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36
Rambouillet Sheep	MODERN SPECIES	13	CHKA (ENSOARG00020014607) #8	ENSOARG00020014508 #9	ENSOARG00020014473 #9	NDUFS8 (ENSOARG00020014383) #10	ENSOARG00020014110 #11	UNC93B1 (ENSOARG00020014035) #12	ENSOARG00020014001	ALDH3B2 (ENSOARG00020013912) #13	TBX10 (ENSOARG00020013801) #15	NUDT8 (ENSOARG00020013703) #16	ENSOARG00020013607 #18	NDUFV1 (ENSOARG00020013585) #19	ENSOARG00020013487	ENSOARG00020013368	CABP2 (ENSOARG00020013080) #21	CDK2AP2 (ENSOARG00020013021) #22	PITPNM1 (ENSOARG00020012916) #23	AIP (ENSOARG00020012864) #24	TMEM134 (ENSOARG00020012668) #25	CABP4 (ENSOARG00020012475) #26	GPR152 (ENSOARG00020012440) #27	CORO1B (ENSOARG00020012381) #29	PTPRCAP (ENSOARG00020012324) #30	RPS6KB2 (ENSOARG00020012258) #31	ENSOARG00020011906	TBC1D10C (ENSOARG00020011852) #33	PPP1CA (ENSOARG00020011637) #34	RAD9A (ENSOARG00020011511) #35	CLCF1 (ENSOARG00020011455)	POLD4 (ENSOARG00020011352) #36	ENSOARG00020011311 #37
Goat	MODERN SPECIES	21	ENSCHIG00000016165	KMT5B (ENSCHIG00000025585) #7	CHKA (ENSCHIG00000014786) #8	TCIRG1 (ENSCHIG00000021975) #9	ENSCHIG00000013308 #10	ENSCHIG00000026059 #11	UNC93B1 (ENSCHIG00000026943) #12	ALDH3B2 (ENSCHIG00000016769) #13	ENSCHIG00000026949	ENSCHIG00000019709	ENSCHIG00000020228 #18	NDUFV1 (ENSCHIG00000022888) #19	ENSCHIG00000014133	ENSCHIG00000015669	CABP2 (ENSCHIG00000009106) #21	CDK2AP2 (ENSCHIG00000021025) #22	PITPNM1 (ENSCHIG00000000979) #23	ENSCHIG00000025314 #24	TMEM134 (ENSCHIG00000013846) #25	CABP4 (ENSCHIG00000012267) #26	GPR152 (ENSCHIG00000007197) #27	ENSCHIG00000015350	ENSCHIG00000023617	ENSCHIG00000011158	AP2A2 (ENSCHIG00000025368)	CHID1 (ENSCHIG00000023896)	ENSCHIG00000016060	ENSCHIG00000026593	ENSCHIG00000007736	ENSCHIG00000019798	IFITM5 (ENSCHIG00000022929)
Bovinae	ANCESTRAL SPECIES	24	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #13	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT01100000264273	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
American bison	MODERN SPECIES	3011	LRP5 (ENSBBBG00000007211)	ENSBBBG00000008495	KMT5B (ENSBBBG00000011927) #7	CHKA (ENSBBBG00000002204) #8	TCIRG1 (ENSBBBG00000011829) #9	NDUFS8 (ENSBBBG00000011803) #10	ENSBBBG00000008099 #11	UNC93B1 (ENSBBBG00000011762) #12	ALDH3B2 (ENSBBBG00000011745) #13	TBX10 (ENSBBBG00000011733) #15	ENSBBBG00000002170	NDUFV1 (ENSBBBG00000006837) #19	ENSBBBG00000011688	ENSBBBG00000011647	CABP2 (ENSBBBG00000002134) #21	CDK2AP2 (ENSBBBG00000011578) #22	PITPNM1 (ENSBBBG00000011566) #23	AIP (ENSBBBG00000011499) #24	TMEM134 (ENSBBBG00000011488) #25	CABP4 (ENSBBBG00000011461) #26	GPR152 (ENSBBBG00000008097) #27	CORO1B (ENSBBBG00000011439) #29	PTPRCAP (ENSBBBG00000011426) #30	RPS6KB2 (ENSBBBG00000011423) #31	ENSBBBG00000011410	TBC1D10C (ENSBBBG00000002019) #33	PPP1CA (ENSBBBG00000002073) #34	RAD9A (ENSBBBG00000011271) #35	CLCF1 (ENSBBBG00000011254)	POLD4 (ENSBBBG00000011249) #36	SSH3 (ENSBBBG00000011241) #37
Bos	ANCESTRAL SPECIES	11	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #13	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT01100000264273	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Bos_a	ANCESTRAL SPECIES	34	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.f ##13	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00960000191071	ENSGT00940000155904.e.b #13	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Wild yak	MODERN SPECIES	1533							UNC93B1 (ENSBMUG00000022067) #12	ENSBMUG00000022057	ALDH3B2 (ENSBMUG00000022044) #13	TBX10 (ENSBMUG00000022029) #15	ENSBMUG00000022014	ENSBMUG00000021996 #18	NDUFV1 (ENSBMUG00000021947) #19	ENSBMUG00000021831	CABP2 (ENSBMUG00000021781) #21	CDK2AP2 (ENSBMUG00000021758) #22	PITPNM1 (ENSBMUG00000021743) #23	AIP (ENSBMUG00000021692) #24	ENSBMUG00000021649 #25	CABP4 (ENSBMUG00000021589) #26	GPR152 (ENSBMUG00000021581) #27	CORO1B (ENSBMUG00000021562) #29	ENSBMUG00000021528 #30	RPS6KB2 (ENSBMUG00000021523) #31	CARNS1 (ENSBMUG00000021512) #32	TBC1D10C (ENSBMUG00000021479) #33	PPP1CA (ENSBMUG00000021462) #34	RAD9A (ENSBMUG00000021453) #35	CLCF1 (ENSBMUG00000021437)	POLD4 (ENSBMUG00000021428) #36	SSH3 (ENSBMUG00000021417) #37
Domestic yak	MODERN SPECIES	21	FGF4 (ENSBGRG00000024355)	ENSBGRG00000024377	ENSBGRG00000024404	CCND1 (ENSBGRG00000024441)	ENSBGRG00000008155	ENSBGRG00000008216	ENSBGRG00000008684	ENSBGRG00000008704	ENSBGRG00000012448 #11	ENSBGRG00000012721 #12	TBX10 (ENSBGRG00000013152) #15	NDUFV1 (ENSBGRG00000013540) #19	ENSBGRG00000013805	ENSBGRG00000013866	CABP2 (ENSBGRG00000013947) #21	CDK2AP2 (ENSBGRG00000014064) #22	ENSBGRG00000014144 #23	ENSBGRG00000014533	CORO1B (ENSBGRG00000014832) #29	PPP1CA (ENSBGRG00000017991) #34	ENSBGRG00000018373	ENSBGRG00000018673	ENSBGRG00000019717	ENSBGRG00000021808	ENSBGRG00000022112	ENSBGRG00000022387	ENSBGRG00000022563	CCS (ENSBGRG00000022678)	ENSBGRG00000023725	ENSBGRG00000025656	YIF1A (ENSBGRG00000025666)
Bos_b	ANCESTRAL SPECIES	10	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00940000154816.a.a #15	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT01100000264273	ENSGT00940000163435.f	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Cow	MODERN SPECIES	21	LRP5 (ENSBTAG00000005903)	C29H11orf24 (ENSBTAG00000004392)	KMT5B (ENSBTAG00000001185) #7	CHKA (ENSBTAG00000010304) #8	TCIRG1 (ENSBTAG00000000292) #9	NDUFS8 (ENSBTAG00000012072) #10	ALDH3B1 (ENSBTAG00000013093) #11	UNC93B1 (ENSBTAG00000001193) #12	ENSBTAG00000012054 #13	TBX10 (ENSBTAG00000011816) #15	DOC2G (ENSBTAG00000021777) #18	NDUFV1 (ENSBTAG00000021776) #19	GSTP1 (ENSBTAG00000051210)	GSTP1 (ENSBTAG00000003548)	CABP2 (ENSBTAG00000022209) #21	CDK2AP2 (ENSBTAG00000002121) #22	PITPNM1 (ENSBTAG00000010482) #23	AIP (ENSBTAG00000010478) #24	TMEM134 (ENSBTAG00000004786) #25	CABP4 (ENSBTAG00000004785) #26	GPR152 (ENSBTAG00000046728) #27	CORO1B (ENSBTAG00000004783) #29	PTPRCAP (ENSBTAG00000004782) #30	RPS6KB2 (ENSBTAG00000009175) #31	CARNS1 (ENSBTAG00000017690) #32	TBC1D10C (ENSBTAG00000013133) #33	PPP1CA (ENSBTAG00000012146) #34	RAD9A (ENSBTAG00000012141) #35	CLCF1 (ENSBTAG00000046110)	POLD4 (ENSBTAG00000017951) #36	SSH3 (ENSBTAG00000031590) #37
Hybrid Bos Indicus	MODERN SPECIES	21	ENSBIXG00005021753	ENSBIXG00005021733	KMT5B (ENSBIXG00005021706) #7	ENSBIXG00005006157 #8	TCIRG1 (ENSBIXG00005021556) #9	NDUFS8 (ENSBIXG00005006662) #10	ENSBIXG00005021420 #11	UNC93B1 (ENSBIXG00005021297) #12	ENSBIXG00005021275 #13	TBX10 (ENSBIXG00005021245) #15	ENSBIXG00005007675 #18	NDUFV1 (ENSBIXG00005021193) #19	ENSBIXG00005021129	ENSBIXG00005021109	CABP2 (ENSBIXG00005021047) #21	ENSBIXG00005020965 #22	PITPNM1 (ENSBIXG00005003531) #23	AIP (ENSBIXG00005020736) #24	TMEM134 (ENSBIXG00005003498) #25	CABP4 (ENSBIXG00005003484) #26	GPR152 (ENSBIXG00005007302) #27	CORO1B (ENSBIXG00005020573) #29	PTPRCAP (ENSBIXG00005020556) #30	RPS6KB2 (ENSBIXG00005007154) #31	CARNS1 (ENSBIXG00005020507) #32	TBC1D10C (ENSBIXG00005020430) #33	PPP1CA (ENSBIXG00005003445) #34	RAD9A (ENSBIXG00005020343) #35	ENSBIXG00005005868	ENSBIXG00005007206 #36	SSH3 (ENSBIXG00005020249) #37
Atlantogenata	ANCESTRAL SPECIES	17	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000163889 #16	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Xenarthra	ANCESTRAL SPECIES	35	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37	ENSGT00950000182928.A.a.b	ENSGT00940000155484
Armadillo	MODERN SPECIES	4298	KMT5B (ENSDNOG00000039986) #7	ENSDNOG00000049704	CHKA (ENSDNOG00000023787) #8	TCIRG1 (ENSDNOG00000002682) #9	NDUFS8 (ENSDNOG00000036530) #10	ENSDNOG00000037144 #11	UNC93B1 (ENSDNOG00000038644) #12	ALDH3B2 (ENSDNOG00000005545) #13	ACY3 (ENSDNOG00000040590) #14	TBX10 (ENSDNOG00000025226) #15	ENSDNOG00000034928 #18	NDUFV1 (ENSDNOG00000007356) #19	GSTP1 (ENSDNOG00000035023) #20	ENSDNOG00000046765	CABP2 (ENSDNOG00000046652) #21	CDK2AP2 (ENSDNOG00000033375) #22	ENSDNOG00000043892 #23	AIP (ENSDNOG00000042576) #24	CABP4 (ENSDNOG00000046240) #26	GPR152 (ENSDNOG00000033395) #27	CORO1B (ENSDNOG00000002044) #29	PTPRCAP (ENSDNOG00000034706) #30	RPS6KB2 (ENSDNOG00000041769) #31	TBC1D10C (ENSDNOG00000037883) #33	PPP1CA (ENSDNOG00000042750) #34	RAD9A (ENSDNOG00000039829) #35	CLCF1 (ENSDNOG00000044435)	POLD4 (ENSDNOG00000035470) #36	ENSDNOG00000032805	SSH3 (ENSDNOG00000039703) #37	ANKRD13D (ENSDNOG00000002857)
Afrotheria	ANCESTRAL SPECIES	9	ENSGT00390000009899.a.d	ENSGT00940000156574.C	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00940000154816.a.a #15	ENSGT00940000163889 #16	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Afrotheria_a	ANCESTRAL SPECIES	9	ENSGT00390000009899.a.d	ENSGT00940000156574.C	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.e.a #11	ENSGT00530000063359.B #12	ENSGT00940000154816.a.a #15	ENSGT00940000163889 #16	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Hyrax	MODERN SPECIES	5783															CABP2 (ENSPCAG00000008970) #21	CDK2AP2 (ENSPCAG00000008952) #22	PITPNM1 (ENSPCAG00000008848) #23	AIP (ENSPCAG00000008812) #24	ENSPCAG00000008770 #25	CABP4 (ENSPCAG00000008736) #26	GPR152 (ENSPCAG00000008723) #27	CORO1B (ENSPCAG00000008674) #29	PTPRCAP (ENSPCAG00000008661) #30	RPS6KB2 (ENSPCAG00000008582) #31	TBC1D10C (ENSPCAG00000008533) #33	PPP1CA (ENSPCAG00000008488) #34	RAD9A (ENSPCAG00000008438) #35	CLCF1 (ENSPCAG00000008411)	POLD4 (ENSPCAG00000008381) #36
Elephant	MODERN SPECIES	532	LRP5 (ENSLAFG00000008300)	ENSLAFG00000006321	KMT5B (ENSLAFG00000006490) #7	CHKA (ENSLAFG00000009985) #8	TCIRG1 (ENSLAFG00000009983) #9	NDUFS8 (ENSLAFG00000006283) #10	ENSLAFG00000009402 #11	UNC93B1 (ENSLAFG00000009400) #12	ENSLAFG00000031633 #11	TBX10 (ENSLAFG00000022296) #15	NUDT8 (ENSLAFG00000015108) #16	ENSLAFG00000030851 #18	NDUFV1 (ENSLAFG00000022729) #19	GSTP1 (ENSLAFG00000022378) #20	CABP2 (ENSLAFG00000000855) #21	CDK2AP2 (ENSLAFG00000010947) #22	PITPNM1 (ENSLAFG00000022098) #23	AIP (ENSLAFG00000005289) #24	ENSLAFG00000032093	ENSLAFG00000003585 #26	ENSLAFG00000028907	CORO1B (ENSLAFG00000008929) #29	PTPRCAP (ENSLAFG00000022927) #30	RPS6KB2 (ENSLAFG00000008925) #31	ENSLAFG00000030838 #32	TBC1D10C (ENSLAFG00000029168) #33	PPP1CA (ENSLAFG00000022802) #34	RAD9A (ENSLAFG00000008918) #35	CLCF1 (ENSLAFG00000010943)	POLD4 (ENSLAFG00000025827) #36	SSH3 (ENSLAFG00000002413) #37
Tenrec	MODERN SPECIES	15452																CDK2AP2 (ENSETEG00000006428) #22
Marsupialia	ANCESTRAL SPECIES	12	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.c #13	ENSGT00530000063359.B #12	ENSGT00940000155904.d #13	ENSGT00390000001189.b #14	ENSGT00940000163374	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Marsupialia_b	ANCESTRAL SPECIES	15	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.c #13	ENSGT00530000063359.B #12	ENSGT00940000155904.d #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Diprotodontia	ANCESTRAL SPECIES	27	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b.e #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.c #13	ENSGT00530000063359.B #12	ENSGT00940000155904.d #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460.p #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Diprotodontia_a	ANCESTRAL SPECIES	15	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b.e #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000155904.c #13	ENSGT00530000063359.B #12	ENSGT00940000155904.d #13	ENSGT00390000001189.b #14	ENSGT00940000154816.a.a #15	ENSGT00940000162775	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460.p #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #29	ENSGT00390000017041 #30	ENSGT00940000155062.a.g #31	ENSGT00390000018717.a #32	ENSGT00940000161287 #33	ENSGT00940000153472.a.b #34	ENSGT00390000005767.a #35	ENSGT00510000048856.C	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Common wonbat	MODERN SPECIES	714	KMT5B (ENSVURG00010024629) #7	CHKA (ENSVURG00010024636) #8	TCIRG1 (ENSVURG00010024654) #9	NDUFS8 (ENSVURG00010024656) #10	ENSVURG00010024659 #13	UNC93B1 (ENSVURG00010024662) #12	ENSVURG00010024664 #13	ENSVURG00010024665 #14	TBX10 (ENSVURG00010024668) #15	ENSVURG00010024670	ENSVURG00010024674 #18	NDUFV1 (ENSVURG00010024680) #19	ENSVURG00010024685 #20	ENSVURG00010024689 #20	CABP2 (ENSVURG00010024694) #21	CDK2AP2 (ENSVURG00010024697) #22	PITPNM1 (ENSVURG00010024698) #23	TMEM134 (ENSVURG00010024702) #25	CABP4 (ENSVURG00010024706) #26	CORO1B (ENSVURG00010024714) #29	ENSVURG00010024721 #30	ENSVURG00010024722 #31	CARNS1 (ENSVURG00010024729) #32	TBC1D10C (ENSVURG00010024747) #33	PPP1CA (ENSVURG00010024750) #34	RAD9A (ENSVURG00010024753) #35	CLCF1 (ENSVURG00010024754)	POLD4 (ENSVURG00010024756) #36	SSH3 (ENSVURG00010024758) #37	ANKRD13D (ENSVURG00010024763)	GRK2 (ENSVURG00010024770)
Wallaby	MODERN SPECIES	12085																CDK2AP2 (ENSMEUG00000005961) #22
Opossum	MODERN SPECIES	321			PPP6R3 (ENSMODG00000021324)	ENSMODG00000027757	KMT5B (ENSMODG00000051228) #7	CHKA (ENSMODG00000021329) #8	ENSMODG00000021330 #9	ENSMODG00000044090	ENSMODG00000021331 #13	UNC93B1 (ENSMODG00000021332) #12	ENSMODG00000049516 #14	ENSMODG00000021334	NDUFV1 (ENSMODG00000021336) #19	GSTP1 (ENSMODG00000041139) #20	CABP2 (ENSMODG00000037024) #21	CDK2AP2 (ENSMODG00000021339) #22
Platypus	MODERN SPECIES	14	MRPL21 (ENSOANG00000006870)	ENSOANG00000049607	PPP6R3 (ENSOANG00000009636)	ENSOANG00000047290	KMT5B (ENSOANG00000048478) #7	CHKA (ENSOANG00000048770) #8	NDUFS8 (ENSOANG00000050025) #10	ENSOANG00000050870 #13	UNC93B1 (ENSOANG00000036137) #12	ENSOANG00000047139 #13	ACY3 (ENSOANG00000029117) #14	ENSOANG00000038879 ##15	ENSOANG00000046295 #16	NDUFV1 (ENSOANG00000042354) #19	GSTP1 (ENSOANG00000037742) #20	CDK2AP2 (ENSOANG00000046933) #22	PITPNM1 (ENSOANG00000040791) #23	AIP (ENSOANG00000037575) #24	ENSOANG00000042594 #25	ENSOANG00000050449 #26	ENSOANG00000050272	CORO1B (ENSOANG00000047940) #29	ENSOANG00000050645 #30	RPS6KB2 (ENSOANG00000036266) #31	CARNS1 (ENSOANG00000005965) #32	PPP1CA (ENSOANG00000011413) #34	RAD9A (ENSOANG00000011414) #35	ENSOANG00000046031	ENSOANG00000038827 #36	SSH3 (ENSOANG00000039995) #37	ANKRD13D (ENSOANG00000044186)
Sauria	ANCESTRAL SPECIES	75												ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000000020.b	ENSGT00940000154885.C	ENSGT00940000160201	ENSGT00390000003450	ENSGT00390000000972	ENSGT00940000156521.b	ENSGT00940000158908	ENSGT00390000011163	ENSGT00940000160477	ENSGT00940000157848	ENSGT00950000183128.C	ENSGT00530000064011	ENSGT00530000063359.B #12
Lepidosauria	ANCESTRAL SPECIES	64											ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000163435	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000000020.b	ENSGT00940000154885.C	ENSGT00940000160201	ENSGT00390000003450	ENSGT00390000000972	ENSGT00940000156521.b	ENSGT00940000158908	ENSGT00390000011163	ENSGT00940000160477	ENSGT00940000157848	ENSGT00950000183128.C	ENSGT00530000064011	ENSGT00530000063359.B #12
Episquamata	ANCESTRAL SPECIES		ENSGT00940000161414	ENSGT00390000015704	ENSGT00940000153662.A	ENSGT00940000161188.d	ENSGT01010000222336.a.a.b	ENSGT00390000017281	ENSGT01100000263494.a.b.b.b	ENSGT00960000191015	ENSGT00950000183022.b	ENSGT00940000158212.B	ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000163435	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT01030000234567.B.b.bb	ENSGT00530000063370.a.b	ENSGT00530000063370.a.a	ENSGT00390000002038	ENSGT01030000234627.a.b.a.a	ENSGT00940000175288	ENSGT01060000248581.A.a.a.b.c.a	ENSGT00520000055649.a	ENSGT00940000156164	ENSGT01050000244842.a.b.b.b.m	ENSGT00390000005182	ENSGT00390000008048	ENSGT00940000157122	ENSGT00420000029890
Laterata	DUPLICATION
Laterata	ANCESTRAL SPECIES	2	ENSGT00390000015704	ENSGT00940000153662.A	ENSGT00940000161188.d	ENSGT01010000222336.a.a.b	ENSGT00390000017281	ENSGT01100000263494.a.b.b.b	ENSGT00940000162329.a.b.b.a.a	ENSGT00940000162329.a.b.b.b	ENSGT00940000162443	ENSGT00950000183022.b	ENSGT00940000158212.B	ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334.a #22	ENSGT00940000160334.b #22	ENSGT00940000161522 #23	ENSGT01030000234567.B.b.bb	ENSGT00530000063370.a.a	ENSGT00390000002038	ENSGT01030000234627.a.b.a.a	ENSGT00940000175288	ENSGT01060000248581.A.a.a.b.c.a.a	ENSGT00520000055649.a	ENSGT00940000156164	ENSGT01050000244842.a.b.b.b.m	ENSGT00390000005182	ENSGT00390000008048	ENSGT00940000157122	ENSGT00420000029890
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES		ENSPMRG00000000227	ENSPMRG00000000265	ENSPMRG00000000283	ENSPMRG00000000304	ENSPMRG00000000320	ENSPMRG00000000342	ENSPMRG00000000361	ENSPMRG00000000375	ENSPMRG00000000392	SLC19A1 (ENSPMRG00000000410)	COL18A1 (ENSPMRG00000000503)	ENSPMRG00000000635	NDUFV1 (ENSPMRG00000000653) #19	ENSPMRG00000000675	CABP2 (ENSPMRG00000000695) #21	ENSPMRG00000000711 #22	PITPNM1 (ENSPMRG00000000726) #23	ENSPMRG00000000759	ENSPMRG00000000785	CBLIF (ENSPMRG00000000801)	MRPL16 (ENSPMRG00000000824)	STX3 (ENSPMRG00000000857)	ENSPMRG00000000900	ENSPMRG00000000912	ENSPMRG00000000922	ENSPMRG00000000935	ENSPMRG00000000942	ENSPMRG00000000954	ENSPMRG00000000965	PATL1 (ENSPMRG00000000982)	OSBP (ENSPMRG00000001015)
Common wall lizard	MODERN SPECIES	16	ENSPMRG00000010540	IGSF21 (ENSPMRG00000010536)	ARHGEF10L (ENSPMRG00000010105)	ENSPMRG00000010024	ENSPMRG00000010023	ENSPMRG00000010020	PURB (ENSPMRG00000010017)	H2AZ2 (ENSPMRG00000010009)	ENSPMRG00000010001	ENSPMRG00000009997	ENSPMRG00000009982	ENSPMRG00000009973	MAT2A (ENSPMRG00000009964)	VDAC3 (ENSPMRG00000009951)	ENSPMRG00000009947	ENSPMRG00000009943 #22	IKBKB (ENSPMRG00000009818)	ENSPMRG00000009789	PLAT (ENSPMRG00000020565)	AP3M2 (ENSPMRG00000020552)	KAT6A (ENSPMRG00000020518)	ANK1 (ENSPMRG00000020098)	NKX6-3 (ENSPMRG00000019967)	GPAT4 (ENSPMRG00000019960)	ENSPMRG00000019954	GINS4 (ENSPMRG00000019943)	GOLGA7 (ENSPMRG00000019937)	ENSPMRG00000019931	SFRP1 (ENSPMRG00000019923)	ENSPMRG00000019920	ZMAT4 (ENSPMRG00000019911)
Laterata	ANCESTRAL SPECIES	2	ENSGT00940000153662.A	ENSGT00940000161188.d	ENSGT01010000222336.a.a.b	ENSGT00390000017281	ENSGT01100000263494.a.b.b.b	ENSGT00940000162329.a.b.b.a.a	ENSGT00940000162329.a.b.b.b	ENSGT00940000162443	ENSGT00950000183022.b	ENSGT00940000158212.B	ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334.a #22	ENSGT00940000160334.b #22	ENSGT00940000161522 #23	ENSGT01030000234567.B.b.bb	ENSGT00530000063370.a.a	ENSGT00390000002038	ENSGT01030000234627.a.b.a.a	ENSGT00940000175288	ENSGT01060000248581.A.a.a.b.c.a.a	ENSGT00520000055649.a	ENSGT00940000156164	ENSGT01050000244842.a.b.b.b.m	ENSGT00390000005182	ENSGT00390000008048	ENSGT00940000157122	ENSGT00420000029890	ENSGT00940000156393
Argentine black and white tegu	MODERN SPECIES	40	ENSSMRG00000001576	ENSSMRG00000001568	ENSSMRG00000001557	ENSSMRG00000001546	ENSSMRG00000001538	ENSSMRG00000001528	ENSSMRG00000001497	ENSSMRG00000001512	ENSSMRG00000001457	SLC19A1 (ENSSMRG00000001454)	COL18A1 (ENSSMRG00000001381)	ENSSMRG00000001364	NDUFV1 (ENSSMRG00000001332) #19	GSTP1 (ENSSMRG00000001313) #20	CABP2 (ENSSMRG00000001288) #21	CDK2AP2 (ENSSMRG00000001284) #22	PITPNM1 (ENSSMRG00000001262) #23	TCN1 (ENSSMRG00000001244)	MRPL16 (ENSSMRG00000001243)	STX3 (ENSSMRG00000001241)	ENSSMRG00000001239	PATL1 (ENSSMRG00000001229)	OSBP (ENSSMRG00000001225)	ENSSMRG00000001222	DTX4 (ENSSMRG00000001208)	ENSSMRG00000001170	ENSSMRG00000001166	CNTF (ENSSMRG00000001159)	ZFP91 (ENSSMRG00000001153)	LPXN (ENSSMRG00000001140)	OR10W1 (ENSSMRG00000001134)
Common wall lizard	MODERN SPECIES	11	ENSPMRG00000020513	SLC3A1 (ENSPMRG00000020509)	PPM1B (ENSPMRG00000020500)	ENSPMRG00000020492	LRPPRC (ENSPMRG00000020011)	ABCG8 (ENSPMRG00000019930)	ABCG5 (ENSPMRG00000019878)	DYNC2LI1 (ENSPMRG00000019863)	PLEKHH2 (ENSPMRG00000019508)	THADA (ENSPMRG00000018815)	ZFP36L2 (ENSPMRG00000018692)	ENSPMRG00000018686	ENSPMRG00000018677	HAAO (ENSPMRG00000018662)	MTA3 (ENSPMRG00000018651)	ENSPMRG00000018626 #22	KCNG3 (ENSPMRG00000004849)	ENSPMRG00000004845	COX7A2L (ENSPMRG00000004839)	EML4 (ENSPMRG00000004814)	PKDCC (ENSPMRG00000004794)	BICRAL (ENSPMRG00000004789)	TBCC (ENSPMRG00000004784)	PRPH2 (ENSPMRG00000004781)	ENSPMRG00000004780	ENSPMRG00000004733	TRERF1 (ENSPMRG00000004713)	MRPS10 (ENSPMRG00000004706)	UTP25 (ENSPMRG00000004693)	ENSPMRG00000004684	ENSPMRG00000004681
Toxicofera	ANCESTRAL SPECIES	5	ENSGT00940000161414	ENSGT00390000015704	ENSGT00940000153662.A	ENSGT00940000161188.d	ENSGT01010000222336.a.a.b	ENSGT00390000017281	ENSGT01100000263494.a.b.b.b	ENSGT00960000191015	ENSGT00950000183022.b	ENSGT00940000158212.B	ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000163435	ENSGT00940000159796 #21	ENSGT00940000164685	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT01030000234567.B.b.bb	ENSGT00530000063370.a.b	ENSGT00530000063370.a.a	ENSGT00390000002038	ENSGT01030000234627.a.b.a.a	ENSGT00940000175288	ENSGT01060000248581.A.a.a.b.c.a	ENSGT00520000055649.a	ENSGT00940000156164	ENSGT01050000244842.a.b.b.b.m	ENSGT00390000005182	ENSGT00390000008048	ENSGT00940000157122	ENSGT00420000029890
Elapidae	ANCESTRAL SPECIES	3	ENSGT00390000015704	ENSGT00940000153662.A	ENSGT00940000161188.d	ENSGT01010000222336.a.a.b.k	ENSGT00390000017281	ENSGT01100000263494.a.b.b.b.g.a.b	ENSGT01100000263494.a.b.b.b.g.b	ENSGT00940000162443	ENSGT00940000162329.b.a.b	ENSGT00950000183022.b	ENSGT00940000158212.B	ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000163435	ENSGT00940000164685	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00530000063370.a.a	ENSGT00390000002038	ENSGT01030000234627.a.b.a.a	ENSGT01100000263561.B.l	ENSGT01060000248581.A.a.a.b.c.a	ENSGT00520000055649.a	ENSGT00940000156164	ENSGT01050000244842.a.b.b.b.m	ENSGT00390000005182	ENSGT00390000008048	ENSGT00940000157122	ENSGT00420000029890	ENSGT00940000156393	ENSGT00940000160259
Elapidae_a	ANCESTRAL SPECIES	133								ENSGT00940000162443	ENSGT00940000162329.b.a.b	ENSGT00950000183022.b	ENSGT00940000158212.B	ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000163435	ENSGT00940000164685	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00530000063370.a.a.c	ENSGT00390000002038	ENSGT01030000234627.a.b.a.a	ENSGT01100000263561.B.l	ENSGT00940000175288	ENSGT01060000248581.A.a.a.b.c.a
Acanthophiinae	ANCESTRAL SPECIES	125								ENSGT00940000162443	ENSGT00940000162329.b.a.b	ENSGT00950000183022.b	ENSGT00940000158212.B	ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000163435	ENSGT00940000164685	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00530000063370.a.a.c	ENSGT00390000002038	ENSGT01030000234627.a.b.a.a	ENSGT01100000263561.B.l	ENSGT00940000175288	ENSGT01060000248581.A.a.a.b.c.a
Eastern brown snake	MODERN SPECIES	166					ENSPTXG00000015427	ENSPTXG00000015429	ENSPTXG00000015437	ENSPTXG00000015438	SLC19A1 (ENSPTXG00000015439)	ENSPTXG00000015440	ENSPTXG00000015442	ENSPTXG00000015443	NDUFV1 (ENSPTXG00000015444) #19	ENSPTXG00000015446	ENSPTXG00000015448	CDK2AP2 (ENSPTXG00000015449) #22	PITPNM1 (ENSPTXG00000015450) #23	CBLIF (ENSPTXG00000015485)	MRPL16 (ENSPTXG00000015489)	STX3 (ENSPTXG00000015490)	ENSPTXG00000015492	OR10V1 (ENSPTXG00000015493)
Mainland tiger snake	MODERN SPECIES	250							ENSNSUG00000016775	ENSNSUG00000016774	ENSNSUG00000016773	SLC19A1 (ENSNSUG00000016772)	ENSNSUG00000016771	ENSNSUG00000016768	NDUFV1 (ENSNSUG00000016767) #19	ENSNSUG00000016766	ENSNSUG00000016765	CDK2AP2 (ENSNSUG00000016763) #22	PITPNM1 (ENSNSUG00000016697) #23	ENSNSUG00000016696	ENSNSUG00000016694	ENSNSUG00000016693	MRPL16 (ENSNSUG00000016690)	STX3 (ENSNSUG00000016575)	ENSNSUG00000016574
Blue-lipped sea krait	MODERN SPECIES	4301															ENSLLTG00000008279	CDK2AP2 (ENSLLTG00000008250) #22	ENSLLTG00000008214	PITPNM1 (ENSLLTG00000008177) #23
Indian cobra	MODERN SPECIES		ENSNNAG00000002178	ENSNNAG00000002170	ENSNNAG00000002167	ENSNNAG00000002161	ENSNNAG00000002152	ENSNNAG00000002131	ENSNNAG00000002105	ENSNNAG00000002041	ENSNNAG00000001969	SLC19A1 (ENSNNAG00000001928)	COL18A1 (ENSNNAG00000001829)	NUDT8 (ENSNNAG00000001793) #16	NDUFV1 (ENSNNAG00000001774) #19	ENSNNAG00000001717	ENSNNAG00000001651	CDK2AP2 (ENSNNAG00000001637) #22	PITPNM1 (ENSNNAG00000001616) #23	CBLIF (ENSNNAG00000001575)	MRPL16 (ENSNNAG00000001551)	STX3 (ENSNNAG00000001524)	ENSNNAG00000001502	OR10V1 (ENSNNAG00000001491)	PATL1 (ENSNNAG00000001472)	OSBP (ENSNNAG00000001447)	ENSNNAG00000001431	MPEG1 (ENSNNAG00000001420)	DTX4 (ENSNNAG00000001406)	ENSNNAG00000001395	ENSNNAG00000001384	CNTF (ENSNNAG00000001376)	ZFP91 (ENSNNAG00000001355)
Lizard	MODERN SPECIES		ENSACAG00000036030	ENSACAG00000000790	ENSACAG00000039319	ENSACAG00000026696	ENSACAG00000037968	ENSACAG00000042531	ENSACAG00000041108	ENSACAG00000025725	ENSACAG00000010477	ENSACAG00000010273	ENSACAG00000028442	NDUFV1 (ENSACAG00000010217) #19	ENSACAG00000003940	CABP2 (ENSACAG00000010150) #21	ENSACAG00000042158	CDK2AP2 (ENSACAG00000010133) #22	PITPNM1 (ENSACAG00000010021) #23	ENSACAG00000009990	TCN1 (ENSACAG00000009976)	CBLIF (ENSACAG00000009964)	MRPL16 (ENSACAG00000009952)	ENSACAG00000036689	STX3 (ENSACAG00000009876)	ENSACAG00000028609	PATL1 (ENSACAG00000006607)	OSBP (ENSACAG00000006658)	ENSACAG00000038541	MPEG1 (ENSACAG00000006729)	DTX4 (ENSACAG00000006730)	ENSACAG00000044191	ENSACAG00000006795
tuatara	MODERN SPECIES	1101												ENSSPUG00000001652	NDUFV1 (ENSSPUG00000001663) #19	ENSSPUG00000001733	ENSSPUG00000001743	CDK2AP2 (ENSSPUG00000001762) #22	PITPNM1 (ENSSPUG00000001775) #23	AIP (ENSSPUG00000001810) #24	MTCH2 (ENSSPUG00000001817)	AGBL2 (ENSSPUG00000001827)	FNBP4 (ENSSPUG00000001869)	NUP160 (ENSSPUG00000001896)
Archelosauria	ANCESTRAL SPECIES	64												ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000000020.b	ENSGT00940000154885.C	ENSGT00940000160201	ENSGT00390000003450	ENSGT00390000000972	ENSGT00940000156521.b	ENSGT00940000158908	ENSGT00390000011163	ENSGT00940000160477	ENSGT00940000157848	ENSGT00950000183128.C	ENSGT00530000064011	ENSGT00530000063359.B #12
Archosauria	ANCESTRAL SPECIES	100													ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24
Aves	ANCESTRAL SPECIES	42	ENSGT00530000063359.B #12	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163	ENSGT00940000158908	ENSGT00940000156521.b	ENSGT00390000000972	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24
Neognathae	ANCESTRAL SPECIES	30	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163	ENSGT00940000158908	ENSGT00940000156521.b	ENSGT00390000000972	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000163889 #16	ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00910000144307	ENSGT00950000183145.A.a	ENSGT00940000154852.b	ENSGT00940000159520.h.r	ENSGT00730000112245	ENSGT00940000165047	ENSGT00390000010778	ENSGT00390000017361	ENSGT00940000160990	ENSGT00940000153899.a.b	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101
Neognathae_b	ANCESTRAL SPECIES	14	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163	ENSGT00940000158908	ENSGT00940000156521.b	ENSGT00390000000972	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000163889 #16	ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00910000144307	ENSGT00950000183145.A.a	ENSGT00940000154852.b	ENSGT00940000159520.h.r	ENSGT00730000112245	ENSGT00940000165047	ENSGT00390000010778	ENSGT00390000017361	ENSGT00940000160990	ENSGT00940000153899.a.b	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101
Passeriformes	ANCESTRAL SPECIES	39	ENSGT00530000063359.B #12	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163	ENSGT00940000158908	ENSGT00940000156521.b	ENSGT00390000000972	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000163889 #16	ENSGT00390000010641 #19	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00950000183145.A.a	ENSGT00940000159520.h.r	ENSGT00730000112245	ENSGT00940000165047	ENSGT00390000010778	ENSGT00390000017361	ENSGT00940000160990	ENSGT00940000153899.a.b	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000164955
Great tit	MODERN SPECIES	25	ENSPMJG00000003832 #13	ENSPMJG00000003840 #13	MAX (ENSPMJG00000003863)	FNTB (ENSPMJG00000003875)	RAB15 (ENSPMJG00000003880)	GPX2 (ENSPMJG00000003949)	CHURC1 (ENSPMJG00000003984)	SPTB (ENSPMJG00000003988)	PLEKHG3 (ENSPMJG00000003998)	NUP160 (ENSPMJG00000004017)	FNBP4 (ENSPMJG00000004890)	AGBL2 (ENSPMJG00000004893)	MTCH2 (ENSPMJG00000004897)	NDUFV1 (ENSPMJG00000004898) #19	CABP2 (ENSPMJG00000004899) #21	CDK2AP2 (ENSPMJG00000004904) #22	PITPNM1 (ENSPMJG00000004907) #23	AIP (ENSPMJG00000005094) #24	ENSPMJG00000005096	ENSPMJG00000005097	ENSPMJG00000005099	ENSPMJG00000005101	TALDO1 (ENSPMJG00000005127)	EIF4G2 (ENSPMJG00000005130)	CTR9 (ENSPMJG00000005691)	ENSPMJG00000006038	IRAG1 (ENSPMJG00000006040)	LYVE1 (ENSPMJG00000006161)	RNF141 (ENSPMJG00000006162)	AMPD3 (ENSPMJG00000006166)	ADM (ENSPMJG00000006168)
Passeriformes_d	ANCESTRAL SPECIES	24	ENSGT00940000155904.q.b.c #13	ENSGT00530000063359.B #12	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163	ENSGT00940000156521.b	ENSGT00390000000972	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00390000010641 #19	ENSGT00940000159796 #21	ENSGT00940000164685	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00950000183145.A.a.g	ENSGT00940000159520.h.r	ENSGT00730000112245	ENSGT00390000010778	ENSGT00390000017361	ENSGT00940000160990	ENSGT00940000153899.a.b	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000164955	ENSGT00390000008048	ENSGT00940000157122
Flycatcher	MODERN SPECIES	24	NDUFS8 (ENSFALG00000025751) #10	ENSFALG00000001178 #13	UNC93B1 (ENSFALG00000001185) #12	MAX (ENSFALG00000026119)	FNTB (ENSFALG00000001199)	RAB15 (ENSFALG00000001205)	GPX2 (ENSFALG00000001208)	CHURC1 (ENSFALG00000024378)	PLEKHG3 (ENSFALG00000001267)	NUP160 (ENSFALG00000001275)	FNBP4 (ENSFALG00000001280)	AGBL2 (ENSFALG00000001274)	MTCH2 (ENSFALG00000001294)	NDUFV1 (ENSFALG00000001321) #19	ENSFALG00000001331	CDK2AP2 (ENSFALG00000024493) #22	PITPNM1 (ENSFALG00000001333) #23	AIP (ENSFALG00000001339) #24	ENSFALG00000023299	ENSFALG00000010841	ENSFALG00000015296	ENSFALG00000027704	TALDO1 (ENSFALG00000026408)	EPS8L2 (ENSFALG00000010891)	TMEM80 (ENSFALG00000010901)	ENSFALG00000022914	DRD4 (ENSFALG00000010941)	ENSFALG00000010954	ENSFALG00000010961	MPEG1 (ENSFALG00000010968)	DTX4 (ENSFALG00000010976)
Passeriformes_g	ANCESTRAL SPECIES																	ENSGT00940000160334 #22
Passeroidea	ANCESTRAL SPECIES																	ENSGT00940000160334 #22
Zebra finch	MODERN SPECIES	27	TCIRG1 (ENSTGUG00000007403) #9	NDUFS8 (ENSTGUG00000007436) #10	ENSTGUG00000026950 #13	ENSTGUG00000007446 #13	MAX (ENSTGUG00000023132)	FNTB (ENSTGUG00000007483)	RAB15 (ENSTGUG00000020981)	CHURC1 (ENSTGUG00000026206)	PLEKHG3 (ENSTGUG00000007578)	NUP160 (ENSTGUG00000007581)	FNBP4 (ENSTGUG00000007629)	AGBL2 (ENSTGUG00000007643)	MTCH2 (ENSTGUG00000007652)	NUDT8 (ENSTGUG00000007694) #16	ENSTGUG00000007725	CDK2AP2 (ENSTGUG00000022260) #22	AIP (ENSTGUG00000007764) #24	ENSTGUG00000007776	ENSTGUG00000007792	ENSTGUG00000007810	ENSTGUG00000016693	ENSTGUG00000020021	ENSTGUG00000007815	TALDO1 (ENSTGUG00000007821)	EIF4G2 (ENSTGUG00000007840)	CTR9 (ENSTGUG00000007907)	IRAG1 (ENSTGUG00000007955)	LYVE1 (ENSTGUG00000007979)	RNF141 (ENSTGUG00000020047)	AMPD3 (ENSTGUG00000008001)	ENSTGUG00000022953
Neognathae_c	ANCESTRAL SPECIES	17	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163	ENSGT00940000158908	ENSGT00940000156521.b	ENSGT00390000000972	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000163889 #16	ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000164685	ENSGT00940000160334 #22	ENSGT00940000161522.b #23	ENSGT00390000001289.a #24	ENSGT00940000159520.h.r	ENSGT00730000112245	ENSGT00940000165047	ENSGT00390000017361	ENSGT00940000160990	ENSGT00940000153899.a.b	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000158912	ENSGT00940000156528	ENSGT00940000159326	ENSGT00390000005766
Golden eagle	MODERN SPECIES	7	ENSACCG00020013027	ENSACCG00020013041	ENSACCG00020013058	ENSACCG00020013089 ##15	TCIRG1 (ENSACCG00020013120) #9	NDUFS8 (ENSACCG00020013144) #10	ENSACCG00020013215 #13	ENSACCG00020013243	NUP160 (ENSACCG00020013268)	FNBP4 (ENSACCG00020013300)	AGBL2 (ENSACCG00020013340)	MTCH2 (ENSACCG00020013377)	ENSACCG00020013401	NDUFV1 (ENSACCG00020013429) #19	ENSACCG00020013451	CDK2AP2 (ENSACCG00020013468) #22	ENSACCG00020013526 #23	ENSACCG00020013507 #23	AIP (ENSACCG00020013542) #24	ENSACCG00020013566	ENSACCG00020013587	ENSACCG00020013619	TALDO1 (ENSACCG00020013649)	EPS8L2 (ENSACCG00020013765)	TMEM80 (ENSACCG00020013821)	DEAF1 (ENSACCG00020013848)	DRD4 (ENSACCG00020013869)	ENSACCG00020013885	BUB1B (ENSACCG00020013915)	PAK6 (ENSACCG00020013954)	PLCB2 (ENSACCG00020014048)
Kakapo	MODERN SPECIES	21	UNC93B1 (ENSSHBG00005018233) #12	MAX (ENSSHBG00005018231)	FNTB (ENSSHBG00005018230)	RAB15 (ENSSHBG00005018227)	GPX2 (ENSSHBG00005018223)	CHURC1 (ENSSHBG00005018217)	SPTB (ENSSHBG00005008745)	ENSSHBG00005008435	NUP160 (ENSSHBG00005008355)	FNBP4 (ENSSHBG00005008293)	AGBL2 (ENSSHBG00005008277)	MTCH2 (ENSSHBG00005008267)	NUDT8 (ENSSHBG00005008258) #16	NDUFV1 (ENSSHBG00005008244) #19	ENSSHBG00005008227	CDK2AP2 (ENSSHBG00005008218) #22	PITPNM1 (ENSSHBG00005008196) #23	AIP (ENSSHBG00005000129) #24	ENSSHBG00005004143	ENSSHBG00005004121	ENSSHBG00005004112	ENSSHBG00005004098	ENSSHBG00005004084	ENSSHBG00005004065	TALDO1 (ENSSHBG00005004056)	EPS8L2 (ENSSHBG00005003789)	TMEM80 (ENSSHBG00005003689)	DEAF1 (ENSSHBG00005003577)	DRD4 (ENSSHBG00005003546)	ENSSHBG00005003536	BUB1B (ENSSHBG00005003488)
Galloanserae	ANCESTRAL SPECIES	30	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163	ENSGT00940000158908	ENSGT00940000156521.b	ENSGT00390000000972	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000163889 #16	ENSGT00390000010641 #19	ENSGT01100000264273	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00940000159520.h.r	ENSGT00730000112245	ENSGT00940000165047	ENSGT00390000010778	ENSGT00390000017361	ENSGT00940000160990	ENSGT00940000153899.a.b	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000164955	ENSGT00940000158912	ENSGT00940000156528
Phasianidae	ANCESTRAL SPECIES	26	ENSGT00530000063359.B #12	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163	ENSGT00940000158908	ENSGT00940000156521.b	ENSGT00390000000972	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000163889 #16	ENSGT00390000010641 #19	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00940000159520.h.r	ENSGT00730000112245	ENSGT00940000165047	ENSGT00390000017361	ENSGT00940000160990	ENSGT00940000153899.a.b	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000164955	ENSGT00940000158912	ENSGT00940000156528	ENSGT00940000159326
Phasianidae_b	ANCESTRAL SPECIES	34	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163	ENSGT00940000158908	ENSGT00940000156521.b	ENSGT00390000000972	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000163889 #16	ENSGT00390000010641 #19	ENSGT01100000264273	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00940000159520.h.r	ENSGT00730000112245	ENSGT00940000165047	ENSGT00390000017361	ENSGT00940000160990	ENSGT00940000153899.a.b	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000164955	ENSGT00940000158912	ENSGT00940000156528	ENSGT00940000159326
Chicken	MODERN SPECIES	34	MAX (ENSGALG00010021506)	FNTB (ENSGALG00010021519)	RAB15 (ENSGALG00010021531)	GPX2 (ENSGALG00010021537)	CHURC1 (ENSGALG00010021558)	SPTB (ENSGALG00010021604)	PLEKHG3 (ENSGALG00010021640)	NUP160 (ENSGALG00010024170)	FNBP4 (ENSGALG00010021695)	AGBL2 (ENSGALG00010021737)	MTCH2 (ENSGALG00010021751)	NUDT8 (ENSGALG00010021835) #16	NDUFV1 (ENSGALG00010021892) #19	ENSGALG00010021851	CABP2 (ENSGALG00010021938) #21	CDK2AP2 (ENSGALG00010021947) #22	PITPNM1 (ENSGALG00010021953) #23	AIP (ENSGALG00010022042) #24	ENSGALG00010022050	NLRP3 (ENSGALG00010022058)	CEND1 (ENSGALG00010022130)	PDDC1 (ENSGALG00010022137)	TALDO1 (ENSGALG00010022148)	EPS8L2 (ENSGALG00010022157)	TMEM80 (ENSGALG00010022227)	DEAF1 (ENSGALG00010022239)	DRD4 (ENSGALG00010022249)	SCT (ENSGALG00010022996)	CDHR5 (ENSGALG00010023008)	BUB1B (ENSGALG00010023017)	PAK6 (ENSGALG00010023257)
Japanese quail	MODERN SPECIES	23	ENSCJPG00005013231	TCIRG1 (ENSCJPG00005013233) #9	ENSCJPG00005013234	ENSCJPG00005013238 #13	ENSCJPG00005013244 #13	UNC93B1 (ENSCJPG00005013270) #12	MAX (ENSCJPG00005013271)	FNTB (ENSCJPG00005013272)	ENSCJPG00005013308	RAB15 (ENSCJPG00005013309)	GPX2 (ENSCJPG00005013310)	NUP160 (ENSCJPG00005013463)	ENSCJPG00005013471	NDUFV1 (ENSCJPG00005013473) #19	CABP2 (ENSCJPG00005013508) #21	CDK2AP2 (ENSCJPG00005013509) #22	AIP (ENSCJPG00005013517) #24	ENSCJPG00005013518	ENSCJPG00005013519	ENSCJPG00005013520	ENSCJPG00005013521	TALDO1 (ENSCJPG00005013524)	EPS8L2 (ENSCJPG00005013525)	TMEM80 (ENSCJPG00005013526)	DEAF1 (ENSCJPG00005013527)	DRD4 (ENSCJPG00005013528)	ENSCJPG00005013529	BUB1B (ENSCJPG00005013530)	PAK6 (ENSCJPG00005013531)	PLCB2 (ENSCJPG00005013534)	INAFM2 (ENSCJPG00005013535)
Cryptodira	ANCESTRAL SPECIES	71												ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00950000183133.f.g.a.b	ENSGT00390000000020.b	ENSGT00940000154885.C	ENSGT00940000160201	ENSGT00390000003450	ENSGT00390000000972	ENSGT00940000156521.b	ENSGT00940000158908	ENSGT00390000011163	ENSGT00940000160477	ENSGT00940000157848	ENSGT00950000183128.C	ENSGT00530000064011
Testudinoidea	ANCESTRAL SPECIES	33									ENSGT00990000205528.c	ENSGT01100000263552.g.b.b.b.c.a.b.b	ENSGT01100000263491.a.b.a.a.a.a.a.a.a.a.a	ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00950000183133.f.g.a.b	ENSGT00390000000020.b	ENSGT00940000154885.C	ENSGT00940000160201	ENSGT00390000003450	ENSGT00390000000972	ENSGT00940000156521.b	ENSGT00940000158908	ENSGT00390000011163	ENSGT00940000160477	ENSGT00940000157848	ENSGT00950000183128.C	ENSGT00530000064011
Emydidae	ANCESTRAL SPECIES	25							ENSGT00950000185037.a.a.a.a.a	ENSGT00990000205528.c	ENSGT01100000263552.g.b.b.b.c.a.b.b	ENSGT01100000263491.a.b.a.a.a.a.a.a.a.a.a	ENSGT00940000154715.b.k.b.a.b.b.b.a.a.a.a.b	ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00940000154885.C	ENSGT00390000000020.b	ENSGT00940000160201	ENSGT00390000003450	ENSGT00390000000972	ENSGT00940000156521.b	ENSGT00940000158908	ENSGT00390000011163	ENSGT00940000160477	ENSGT00940000157848	ENSGT00950000183128.C	ENSGT00530000064011	ENSGT00530000063359.B #12
Three-toed box turtle	MODERN SPECIES	404	ENSTMTG00000010058	ENSTMTG00000010045	ENSTMTG00000010029	ENSTMTG00000010011	ENSTMTG00000009993	ENSTMTG00000009966	ENSTMTG00000009951	ENSTMTG00000009942	ENSTMTG00000009935	ENSTMTG00000009928	ENSTMTG00000009915	ENSTMTG00000009905	NDUFV1 (ENSTMTG00000009882) #19	ENSTMTG00000009865	ENSTMTG00000009840	CDK2AP2 (ENSTMTG00000009820) #22	PITPNM1 (ENSTMTG00000009768) #23	AIP (ENSTMTG00000009747) #24	ENSTMTG00000009733	MTCH2 (ENSTMTG00000009709)	AGBL2 (ENSTMTG00000009638)	FNBP4 (ENSTMTG00000009467)	NUP160 (ENSTMTG00000009394)	SPTB (ENSTMTG00000008729)	CHURC1 (ENSTMTG00000008613)	FNTB (ENSTMTG00000008588)	MAX (ENSTMTG00000008579)	ENSTMTG00000008565 #12	MPEG1 (ENSTMTG00000008547)	DTX4 (ENSTMTG00000008534)	ENSTMTG00000008529
painted turtle	MODERN SPECIES	1150			ENSCPBG00000015266	ENSCPBG00000015268	ENSCPBG00000015272	ENSCPBG00000015274	ENSCPBG00000015276	ENSCPBG00000015278	ENSCPBG00000015279	ENSCPBG00000015281	ENSCPBG00000015283	ENSCPBG00000015285	NDUFV1 (ENSCPBG00000015286) #19	GSTP1 (ENSCPBG00000015287) #20	CABP2 (ENSCPBG00000015291) #21	CDK2AP2 (ENSCPBG00000015408) #22	PITPNM1 (ENSCPBG00000015423) #23	AIP (ENSCPBG00000015740) #24
Testudinidae	ANCESTRAL SPECIES	42													ENSGT00940000162775	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000160334 #22	ENSGT00940000161522.c #23	ENSGT00390000001289.a #24	ENSGT00950000183133.f.g.a.b.b	ENSGT00940000154885.C	ENSGT00390000000020.b	ENSGT00940000160201	ENSGT00390000003450	ENSGT00390000000972	ENSGT00940000156521.b	ENSGT00940000158908	ENSGT00390000011163	ENSGT00940000160477	ENSGT00940000157848	ENSGT00950000183128.C	ENSGT00530000064011
Goode s thornscrub tortoise	MODERN SPECIES	18	ENSGEVG00005000991	ENSGEVG00005000912	ENSGEVG00005000891	ENSGEVG00005000878	ENSGEVG00005000774	ENSGEVG00005000667	ENSGEVG00005000628	ENSGEVG00005000583	ENSGEVG00005000552	ENSGEVG00005000542	ENSGEVG00005000528	ENSGEVG00005000514	NDUFV1 (ENSGEVG00005000449) #19	GSTP1 (ENSGEVG00005000393) #20	ENSGEVG00005000368	CDK2AP2 (ENSGEVG00005000341) #22	PITPNM1 (ENSGEVG00005000305) #23	AIP (ENSGEVG00005000269) #24	ENSGEVG00005000228	ENSGEVG00005000179	ENSGEVG00005000141	MTCH2 (ENSGEVG00005000116)	AGBL2 (ENSGEVG00005018370)	FNBP4 (ENSGEVG00005018174)	NUP160 (ENSGEVG00005017393)	ENSGEVG00005017129	ENSGEVG00005017084	SPTB (ENSGEVG00005011161)	CHURC1 (ENSGEVG00005010152)	GPX2 (ENSGEVG00005010103)	RAB15 (ENSGEVG00005010078)
Abingdon island giant tortoise	MODERN SPECIES	442		ENSCABG00000000961	ENSCABG00000000959	ENSCABG00000000954	ENSCABG00000000949	ENSCABG00000000947	ENSCABG00000000944	ENSCABG00000000943	ENSCABG00000000940	ENSCABG00000000937	ENSCABG00000000930	ENSCABG00000000925	NDUFV1 (ENSCABG00000000920) #19	GSTP1 (ENSCABG00000000917) #20	ENSCABG00000000909	CDK2AP2 (ENSCABG00000000908) #22	ENSCABG00000000849 #23	ENSCABG00000000834 #23	AIP (ENSCABG00000000827) #24	ENSCABG00000000814	MTCH2 (ENSCABG00000000808)	ENSCABG00000000804	AGBL2 (ENSCABG00000000796)	FNBP4 (ENSCABG00000000770)	NUP160 (ENSCABG00000000126)	ENSCABG00000000082	ENSCABG00000000079	SPTB (ENSCABG00000000067)	CHURC1 (ENSCABG00000000026)	GPX2 (ENSCABG00000000008)	RAB15 (ENSCABG00000020617)
Chinese turtle	MODERN SPECIES	114	ENSPSIG00000000577	ZDHHC5 (ENSPSIG00000005291)	MED19 (ENSPSIG00000005282)	TMX2 (ENSPSIG00000005258)	ENSPSIG00000005180	ENSPSIG00000005146	ENSPSIG00000000562	CTNND1 (ENSPSIG00000017242)	ENSPSIG00000016923	ENSPSIG00000015876	ENSPSIG00000015829	ENSPSIG00000015777	ENSPSIG00000015678	GSTP1 (ENSPSIG00000015623) #20	ENSPSIG00000015508	CDK2AP2 (ENSPSIG00000015488) #22	NDUFV1 (ENSPSIG00000014802) #19	AIP (ENSPSIG00000014384) #24	ENSPSIG00000014375	AGBL2 (ENSPSIG00000013694)	FNBP4 (ENSPSIG00000013410)	NUP160 (ENSPSIG00000010768)	ENSPSIG00000010568	ENSPSIG00000010375	CHURC1 (ENSPSIG00000010365)	RAB15 (ENSPSIG00000010029)	FNTB (ENSPSIG00000009679)	MAX (ENSPSIG00000009674)	ENSPSIG00000009622 #12