Glires	ANCESTRAL SPECIES	1	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775 #17	ENSGT00940000162875 #18	ENSGT01100000264273	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Rodentia	ANCESTRAL SPECIES	1	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775 #17	ENSGT00940000162875 #18	ENSGT01100000264273	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775 #17	ENSGT00940000162875 #18	ENSGT01100000264273	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775 #17	ENSGT00940000162875 #18	ENSGT01100000264273	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Degu	MODERN SPECIES	59	ENSODEG00000017460 #7	CHKA (ENSODEG00000017808) #8	TCIRG1 (ENSODEG00000017607) #9	ENSODEG00000017577 #10	ALDH3B1 (ENSODEG00000017474) #11	UNC93B1 (ENSODEG00000017652) #12	ENSODEG00000017464 #13	ALDH3B2 (ENSODEG00000017453) #14	ACY3 (ENSODEG00000017439) #15	TBX10 (ENSODEG00000017601) #16	ENSODEG00000017697 #17	ENSODEG00000017660 #18	NDUFV1 (ENSODEG00000017535) #19	ENSODEG00000017726 #20	CABP2 (ENSODEG00000017525) #21	CDK2AP2 (ENSODEG00000017482) #22	ENSODEG00000017542 #23	ENSODEG00000017554 #24	ENSODEG00000017587 #25	CABP4 (ENSODEG00000017561) #26	GPR152 (ENSODEG00000017462) #27	ENSODEG00000017778 #28	PTPRCAP (ENSODEG00000017616) #29	RPS6KB2 (ENSODEG00000017566) #30	CARNS1 (ENSODEG00000017571) #31	TBC1D10C (ENSODEG00000017872) #32	ENSODEG00000017595 #33	RAD9A (ENSODEG00000017457) #34	CLCF1 (ENSODEG00000017639) #35	POLD4 (ENSODEG00000017608) #36	SSH3 (ENSODEG00000017507) #37
Long-tailed chinchilla	MODERN SPECIES	129	ENSCLAG00000017122	KMT5B (ENSCLAG00000016628) #7	CHKA (ENSCLAG00000014223) #8	TCIRG1 (ENSCLAG00000014792) #9	NDUFS8 (ENSCLAG00000017156) #10	ALDH3B1 (ENSCLAG00000016029) #11	UNC93B1 (ENSCLAG00000016729) #12	ALDH3B2 (ENSCLAG00000017296) #14	ACY3 (ENSCLAG00000016314) #15	TBX10 (ENSCLAG00000015667) #16	ENSCLAG00000016240 #17	ENSCLAG00000016785 #18	NDUFV1 (ENSCLAG00000016746) #19	GSTP1 (ENSCLAG00000015548) #20	CABP2 (ENSCLAG00000015734) #21	CDK2AP2 (ENSCLAG00000014787) #22	ENSCLAG00000015015 #23	AIP (ENSCLAG00000016600) #24	TMEM134 (ENSCLAG00000016841) #25	CABP4 (ENSCLAG00000016497) #26	GPR152 (ENSCLAG00000016443) #27	CORO1B (ENSCLAG00000015993) #28	RPS6KB2 (ENSCLAG00000016408) #30	PTPRCAP (ENSCLAG00000016874) #29	CARNS1 (ENSCLAG00000016069) #31	TBC1D10C (ENSCLAG00000014250) #32	PPP1CA (ENSCLAG00000014515) #33	RAD9A (ENSCLAG00000014799) #34	CLCF1 (ENSCLAG00000016411) #35	POLD4 (ENSCLAG00000016804) #36	SSH3 (ENSCLAG00000016225) #37
Guinea pig	MODERN SPECIES	42	ENSCPOG00000000621	KMT5B (ENSCPOG00000002147) #7	CHKA (ENSCPOG00000022236) #8	TCIRG1 (ENSCPOG00000001417) #9	NDUFS8 (ENSCPOG00000001416) #10	ALDH3B1 (ENSCPOG00000021502) #11	UNC93B1 (ENSCPOG00000026431) #12	ALDH3B2 (ENSCPOG00000002523) #14	ACY3 (ENSCPOG00000002519) #15	TBX10 (ENSCPOG00000032079) #16	ENSCPOG00000002514 #17	ENSCPOG00000022649 #18	NDUFV1 (ENSCPOG00000006645) #19	GSTP1 (ENSCPOG00000020253) #20	CABP2 (ENSCPOG00000023151) #21	CDK2AP2 (ENSCPOG00000033165) #22	PITPNM1 (ENSCPOG00000011204) #23	AIP (ENSCPOG00000025197) #24	TMEM134 (ENSCPOG00000034721) #25	CABP4 (ENSCPOG00000038418) #26	GPR152 (ENSCPOG00000020561) #27	CORO1B (ENSCPOG00000010527) #28	PTPRCAP (ENSCPOG00000023825) #29	RPS6KB2 (ENSCPOG00000010518) #30	CARNS1 (ENSCPOG00000010514) #31	TBC1D10C (ENSCPOG00000011171) #32	PPP1CA (ENSCPOG00000032835) #33	RAD9A (ENSCPOG00000033699) #34	CLCF1 (ENSCPOG00000031948) #35	POLD4 (ENSCPOG00000039935) #36	SSH3 (ENSCPOG00000008616) #37
Naked mole-rat female	MODERN SPECIES	14	TCIRG1 (ENSHGLG00000018395) #9	NDUFS8 (ENSHGLG00000009570) #10	ALDH3B1 (ENSHGLG00000015602) #11	UNC93B1 (ENSHGLG00000011769) #12	ALDH3B2 (ENSHGLG00000010052) #14	ACY3 (ENSHGLG00000015831) #15	TBX10 (ENSHGLG00000015945) #16	NUDT8 (ENSHGLG00000047808)	ENSHGLG00000018636 #18	ENSHGLG00000048694	NDUFV1 (ENSHGLG00000042428) #19	GSTP1 (ENSHGLG00000018697) #20	ENSHGLG00000043193	ENSHGLG00000011960	CABP2 (ENSHGLG00000006502) #21	CDK2AP2 (ENSHGLG00000008013) #22	PITPNM1 (ENSHGLG00000008671) #23	AIP (ENSHGLG00000010309) #24	TMEM134 (ENSHGLG00000046661)	CABP4 (ENSHGLG00000012191) #26	GPR152 (ENSHGLG00000020880) #27	CORO1B (ENSHGLG00000014004) #28	PTPRCAP (ENSHGLG00000038375) #29	RPS6KB2 (ENSHGLG00000011537) #30	CARNS1 (ENSHGLG00000015759) #31	TBC1D10C (ENSHGLG00000011863) #32	PPP1CA (ENSHGLG00000013028) #33	RAD9A (ENSHGLG00000013829) #34	CLCF1 (ENSHGLG00000009725) #35	POLD4 (ENSHGLG00000010576) #36	SSH3 (ENSHGLG00000011687) #37
Sciuridae	ANCESTRAL SPECIES	22	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	2	ENSSVLG00005024959	CHKA (ENSSVLG00005025020) #8	ENSSVLG00005025068 #9	ENSSVLG00005025100 #9	NDUFS8 (ENSSVLG00005025114) #10	ALDH3B1 (ENSSVLG00005025147) #11	UNC93B1 (ENSSVLG00005025215) #12	ALDH3B2 (ENSSVLG00005025242) #14	ACY3 (ENSSVLG00005025257) #15	TBX10 (ENSSVLG00005025280) #16	ENSSVLG00005025291 #17	ENSSVLG00005025305 #18	NDUFV1 (ENSSVLG00005025325) #19	GSTP1 (ENSSVLG00005025366) #20	CABP2 (ENSSVLG00005025399) #21	ENSSVLG00005004797 #22	PITPNM1 (ENSSVLG00005004838) #23	AIP (ENSSVLG00005004870) #24	TMEM134 (ENSSVLG00005004915) #25	CABP4 (ENSSVLG00005004965) #26	CORO1B (ENSSVLG00005004995) #28	PTPRCAP (ENSSVLG00005005019) #29	RPS6KB2 (ENSSVLG00005005042) #30	CARNS1 (ENSSVLG00005005060) #31	TBC1D10C (ENSSVLG00005005134) #32	PPP1CA (ENSSVLG00005005219) #33	RAD9A (ENSSVLG00005005281) #34	CLCF1 (ENSSVLG00005005308) #35	POLD4 (ENSSVLG00005005332) #36	ENSSVLG00005005401	SSH3 (ENSSVLG00005005420) #37
Eurasian red squirrel	MODERN SPECIES	7	ENSSVLG00005009267	ENSSVLG00005009250	GALNT15 (ENSSVLG00005009222)	ENSSVLG00005009200	ENSSVLG00005009153	ENSSVLG00005009053	RFTN1 (ENSSVLG00005009013)	ENSSVLG00005008982	ENSSVLG00005008951	ENSSVLG00005008794	PLCL2 (ENSSVLG00005008741)	TBC1D5 (ENSSVLG00005008563)	SATB1 (ENSSVLG00005024270)	KCNH8 (ENSSVLG00005024188)	ENSSVLG00005024173	ENSSVLG00005024162 #22	EFHB (ENSSVLG00005024067)	RAB5A (ENSSVLG00005024015)	PP2D1 (ENSSVLG00005023998)	ENSSVLG00005023944	ENSSVLG00005023908	ENSSVLG00005023889	ENSSVLG00005023862	ENSSVLG00005023824	ZNF385D (ENSSVLG00005023781)	TOMM22 (ENSSVLG00005023755)	ENSSVLG00005023738	ENSSVLG00005023698	ENSSVLG00005023675	ENSSVLG00005023653	UBE2E2 (ENSSVLG00005023634)
Marmotini	ANCESTRAL SPECIES	6	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Marmotini_b	ANCESTRAL SPECIES	19	ENSGT00940000156574.C	ENSGT00940000153377.B	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00390000001189.b #15	ENSGT00940000154816.a.a #16	ENSGT00940000162775 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Arctic ground squirrel	MODERN SPECIES	172	LRP5 (ENSUPAG00010007453)	ENSUPAG00010007475	KMT5B (ENSUPAG00010007478) #7	CHKA (ENSUPAG00010007654) #8	TCIRG1 (ENSUPAG00010007691) #9	NDUFS8 (ENSUPAG00010007713) #10	ALDH3B1 (ENSUPAG00010007728) #11	UNC93B1 (ENSUPAG00010007746) #12	ACY3 (ENSUPAG00010007756) #15	ENSUPAG00010007771	ENSUPAG00010007775 #17	ENSUPAG00010007785 #18	NDUFV1 (ENSUPAG00010007803) #19	GSTP1 (ENSUPAG00010007817) #20	CABP2 (ENSUPAG00010007845) #21	CDK2AP2 (ENSUPAG00010007891) #22	PITPNM1 (ENSUPAG00010007905) #23	AIP (ENSUPAG00010007946) #24	TMEM134 (ENSUPAG00010007965) #25	CABP4 (ENSUPAG00010007974) #26	GPR152 (ENSUPAG00010007987) #27	CORO1B (ENSUPAG00010007990) #28	PTPRCAP (ENSUPAG00010008006) #29	RPS6KB2 (ENSUPAG00010008011) #30	CARNS1 (ENSUPAG00010008057) #31	TBC1D10C (ENSUPAG00010008076) #32	PPP1CA (ENSUPAG00010008103) #33	RAD9A (ENSUPAG00010008112) #34	CLCF1 (ENSUPAG00010008123) #35	POLD4 (ENSUPAG00010008127) #36	SSH3 (ENSUPAG00010008136) #37
Squirrel	MODERN SPECIES	199	ENSSTOG00000012277	KMT5B (ENSSTOG00000024331) #7	ENSSTOG00000019647 ##13	CHKA (ENSSTOG00000011503) #8	TCIRG1 (ENSSTOG00000024529) #9	NDUFS8 (ENSSTOG00000011500) #10	ALDH3B1 (ENSSTOG00000015155) #11	UNC93B1 (ENSSTOG00000011497) #12	ACY3 (ENSSTOG00000015148) #15	TBX10 (ENSSTOG00000011629) #16	ENSSTOG00000024208 #17	ENSSTOG00000021128 #18	NDUFV1 (ENSSTOG00000005850) #19	GSTP1 (ENSSTOG00000025905) #20	CABP2 (ENSSTOG00000014876) #21	CDK2AP2 (ENSSTOG00000024042) #22	PITPNM1 (ENSSTOG00000027855) #23	AIP (ENSSTOG00000015721) #24	TMEM134 (ENSSTOG00000015718) #25	CABP4 (ENSSTOG00000019909) #26	GPR152 (ENSSTOG00000031517) #27	CORO1B (ENSSTOG00000015711) #28	PTPRCAP (ENSSTOG00000032084) #29	RPS6KB2 (ENSSTOG00000026088) #30	CARNS1 (ENSSTOG00000026187) #31	TBC1D10C (ENSSTOG00000015704) #32	PPP1CA (ENSSTOG00000019550) #33	RAD9A (ENSSTOG00000021365) #34	CLCF1 (ENSSTOG00000015702) #35	POLD4 (ENSSTOG00000015701) #36	SSH3 (ENSSTOG00000015693) #37
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000163374	ENSGT00940000163889	ENSGT00940000162775 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Kangaroo rat	MODERN SPECIES	373	ENSDORG00000015449 #7	Chka (ENSDORG00000012471) #8	Tcirg1 (ENSDORG00000012469) #9	ENSDORG00000003567	Aldh3b1 (ENSDORG00000003566) #11	Unc93b1 (ENSDORG00000003564) #12	ENSDORG00000027104 #14	Acy3 (ENSDORG00000027105) #15	Tbx10 (ENSDORG00000010070)	ENSDORG00000010072	Doc2g (ENSDORG00000026896) #18	Ndufv1 (ENSDORG00000010074) #19	ENSDORG00000002063 #20	Gstp3 (ENSDORG00000024771)	Cabp2 (ENSDORG00000014527) #21	Cdk2ap2 (ENSDORG00000025739) #22	ENSDORG00000014531 #23	Aip (ENSDORG00000014533) #24	Tmem134 (ENSDORG00000014535) #25	Cabp4 (ENSDORG00000014536) #26	Gpr152 (ENSDORG00000028173) #27	ENSDORG00000014537 #28	Ptprcap (ENSDORG00000014538) #29	Rps6kb2 (ENSDORG00000014540) #30	ENSDORG00000014541	Tbc1d10c (ENSDORG00000029199) #32	ENSDORG00000012300 #33	Rad9a (ENSDORG00000012297) #34	Clcf1 (ENSDORG00000015120) #35	Pold4 (ENSDORG00000023882) #36	Ssh3 (ENSDORG00000010943) #37
Myomorpha	ANCESTRAL SPECIES	4	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000163374	ENSGT00940000162775 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Muroidea	ANCESTRAL SPECIES	2	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b #14	ENSGT00390000001189.b #15	ENSGT00940000163374	ENSGT00940000162775 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Muroidea_A	ANCESTRAL SPECIES		ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b.f #14	ENSGT00940000155904.e.b.e #14	ENSGT00390000001189.b #15	ENSGT00940000163374	ENSGT00940000162775 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b.f #14	ENSGT00940000155904.e.b.e #14	ENSGT00390000001189.b #15	ENSGT00940000163374	ENSGT00940000162775 #17	ENSGT00940000162875 #18	ENSGT00390000010641.b #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b.f #14	ENSGT00940000155904.e.b.e #14	ENSGT00390000001189.b #15	ENSGT00940000163374	ENSGT00940000162775 #17	ENSGT00940000162875 #18	ENSGT00390000010641.b #19	ENSGT00390000010641.a #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Chinese hamster chok1gshd	MODERN SPECIES	401	Chka (ENSCGRG00001013471) #8	Tcirg1 (ENSCGRG00001015923) #9	Ndufs8 (ENSCGRG00001023988) #10	Aldh3b1 (ENSCGRG00001001915) #11	Unc93b1 (ENSCGRG00001017240) #12	Aldh3b3 (ENSCGRG00001006169) #14	Aldh3b2 (ENSCGRG00001013897) #14	Acy3 (ENSCGRG00001022288) #15	Tbx10 (ENSCGRG00001004850)	Nudt8 (ENSCGRG00001011961) #17	Doc2g (ENSCGRG00001018346) #18	Ndufv1 (ENSCGRG00001015739) #19	Gstp1 (ENSCGRG00001020577) #20	Gstp3 (ENSCGRG00001014473)	Cabp2 (ENSCGRG00001008642) #21	Cdk2ap2 (ENSCGRG00001012920) #22	Pitpnm1 (ENSCGRG00001023287) #23	Aip (ENSCGRG00001007960) #24	Tmem134 (ENSCGRG00001010615) #25	Cabp4 (ENSCGRG00001017640) #26	Gpr152 (ENSCGRG00001019323) #27	Coro1b (ENSCGRG00001004662) #28	Ptprcap (ENSCGRG00001010731) #29	Rps6kb2 (ENSCGRG00001000810) #30	Ssh3 (ENSCGRG00001013911) #37	Ankrd13d (ENSCGRG00001015858)	Grk2 (ENSCGRG00001017520)	Kdm2a (ENSCGRG00001022950)	Rhod (ENSCGRG00001010682)	Syt12 (ENSCGRG00001017074)	2010003K11Rik (ENSCGRG00001018760)
Golden Hamster	MODERN SPECIES	617	ENSMAUG00000018025	Kmt5b (ENSMAUG00000018918) #7	Chka (ENSMAUG00000017295) #8	Ndufs8 (ENSMAUG00000017880) #10	Aldh3b1 (ENSMAUG00000017809) #11	Unc93b1 (ENSMAUG00000018290) #12	Aldh3b2 (ENSMAUG00000017545) #14	Acy3 (ENSMAUG00000017411) #15	Tbx10 (ENSMAUG00000019219)	Nudt8 (ENSMAUG00000017149) #17	Doc2g (ENSMAUG00000017758) #18	ENSMAUG00000017366 #19	Gstp1 (ENSMAUG00000017855) #20	Gstp3 (ENSMAUG00000016934)	Cabp2 (ENSMAUG00000017000) #21	Cdk2ap2 (ENSMAUG00000017833) #22	Pitpnm1 (ENSMAUG00000016912) #23	Aip (ENSMAUG00000017268) #24	Tmem134 (ENSMAUG00000017612) #25	Cabp4 (ENSMAUG00000017898) #26	Gpr152 (ENSMAUG00000016522) #27	Coro1b (ENSMAUG00000016373) #28	Ptprcap (ENSMAUG00000017359) #29	Rps6kb2 (ENSMAUG00000017230) #30	Carns1 (ENSMAUG00000017398) #31	Tbc1d10c (ENSMAUG00000017190) #32	Ppp1ca (ENSMAUG00000016057) #33	Rad9a (ENSMAUG00000017164) #34	Clcf1 (ENSMAUG00000017012) #35	Pold4 (ENSMAUG00000016004) #36	Ssh3 (ENSMAUG00000016554) #37
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b.f #14	ENSGT00940000155904.e.b.e #14	ENSGT00390000001189.b #15	ENSGT00940000163374	ENSGT00940000162775 #17	ENSGT00940000162875 #18	ENSGT00390000010641.b #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Prairie vole	MODERN SPECIES	16	Chka (ENSMOCG00000007076) #8	Tcirg1 (ENSMOCG00000005946) #9	ENSMOCG00000019842	Aldh3b1 (ENSMOCG00000020373) #11	Unc93b1 (ENSMOCG00000008961) #12	Aldh3b3 (ENSMOCG00000021302) #14	Aldh3b2 (ENSMOCG00000022624) #14	Acy3 (ENSMOCG00000016646) #15	Tbx10 (ENSMOCG00000018876)	Nudt8 (ENSMOCG00000002104) #17	Doc2g (ENSMOCG00000007770) #18	Ndufv1 (ENSMOCG00000018645) #19	ENSMOCG00000020246 #20	Gstp3 (ENSMOCG00000020117)	Cabp2 (ENSMOCG00000022563) #21	Cdk2ap2 (ENSMOCG00000011876) #22	Pitpnm1 (ENSMOCG00000006486) #23	Aip (ENSMOCG00000001242) #24	Tmem134 (ENSMOCG00000002494) #25	Cabp4 (ENSMOCG00000013395) #26	Gpr152 (ENSMOCG00000015199) #27	Coro1b (ENSMOCG00000015585) #28	Ptprcap (ENSMOCG00000021498) #29	Rps6kb2 (ENSMOCG00000006354) #30	ENSMOCG00000018725	Tbc1d10c (ENSMOCG00000022473) #32	ENSMOCG00000000843 #33	Rad9a (ENSMOCG00000011209) #34	Clcf1 (ENSMOCG00000019813) #35	Pold4 (ENSMOCG00000020727) #36	Ssh3 (ENSMOCG00000010426) #37
Northern American deer mouse	MODERN SPECIES		Ndufs8 (ENSPEMG00000014723) #10	Aldh3b1 (ENSPEMG00000026438) #11	Unc93b1 (ENSPEMG00000015773) #12	Aldh3b3 (ENSPEMG00000024395) #14	Aldh3b2 (ENSPEMG00000026919) #14	ENSPEMG00000014977 #15	Tbx10 (ENSPEMG00000017754)	Nudt8 (ENSPEMG00000018440) #17	Doc2g (ENSPEMG00000005234) #18	Ndufv1 (ENSPEMG00000011587) #19	ENSPEMG00000005365	ENSPEMG00000029247	ENSPEMG00000016907 #20	Gstp3 (ENSPEMG00000030796)	Cabp2 (ENSPEMG00000005235) #21	Cdk2ap2 (ENSPEMG00000028665) #22	Pitpnm1 (ENSPEMG00000001355) #23	Aip (ENSPEMG00000005397) #24	Tmem134 (ENSPEMG00000008430) #25	Cabp4 (ENSPEMG00000008224) #26	Gpr152 (ENSPEMG00000008897) #27	Coro1b (ENSPEMG00000011980) #28	Ptprcap (ENSPEMG00000029717) #29	Rps6kb2 (ENSPEMG00000016166) #30	Carns1 (ENSPEMG00000010758) #31	Tbc1d10c (ENSPEMG00000013534) #32	Ppp1ca (ENSPEMG00000009056) #33	Rad9a (ENSPEMG00000006275) #34	Clcf1 (ENSPEMG00000008786) #35	Pold4 (ENSPEMG00000025422) #36	Ssh3 (ENSPEMG00000018081) #37
Murinae	ANCESTRAL SPECIES		ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b.f #14	ENSGT00940000155904.e.b.e #14	ENSGT00390000001189.b #15	ENSGT00940000163374	ENSGT00940000162775 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Mus	ANCESTRAL SPECIES		ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b.f #14	ENSGT00940000155904.e.b.e #14	ENSGT00390000001189.b #15	ENSGT00940000163374	ENSGT00940000162775 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Mus_A	ANCESTRAL SPECIES	16	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b.f #14	ENSGT00940000155904.e.b.e #14	ENSGT00390000001189.b #15	ENSGT00940000163374	ENSGT00940000162775 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Ryukyu mouse	MODERN SPECIES	10	Tcirg1 (MGP_CAROLIEiJ_G0022473) #9	Ndufs8 (MGP_CAROLIEiJ_G0022474) #10	Aldh3b1 (MGP_CAROLIEiJ_G0022475) #11	Unc93b1 (MGP_CAROLIEiJ_G0022476) #12	MGP_CAROLIEiJ_G0022477	Aldh3b2 (MGP_CAROLIEiJ_G0022478) #14	Acy3 (MGP_CAROLIEiJ_G0022479) #15	Tbx10 (MGP_CAROLIEiJ_G0022480)	Nudt8 (MGP_CAROLIEiJ_G0022481) #17	Doc2g (MGP_CAROLIEiJ_G0022482) #18	Ndufv1 (MGP_CAROLIEiJ_G0022483) #19	MGP_CAROLIEiJ_G0022484 #20	MGP_CAROLIEiJ_G0022485 #20	Gstp3 (MGP_CAROLIEiJ_G0022486)	Cabp2 (MGP_CAROLIEiJ_G0022487) #21	Cdk2ap2 (MGP_CAROLIEiJ_G0022488) #22	Pitpnm1 (MGP_CAROLIEiJ_G0022489) #23	Aip (MGP_CAROLIEiJ_G0022490) #24	Cabp4 (MGP_CAROLIEiJ_G0022491) #26	Gpr152 (MGP_CAROLIEiJ_G0022492) #27	Coro1b (MGP_CAROLIEiJ_G0022493) #28	Ptprcap (MGP_CAROLIEiJ_G0022494) #29	Rps6kb2 (MGP_CAROLIEiJ_G0022495) #30	Carns1 (MGP_CAROLIEiJ_G0022496) #31	Tbc1d10c (MGP_CAROLIEiJ_G0022497) #32	Ppp1ca (MGP_CAROLIEiJ_G0022498) #33	Rad9a (MGP_CAROLIEiJ_G0022499) #34	Clcf1 (MGP_CAROLIEiJ_G0022500) #35	Pold4 (MGP_CAROLIEiJ_G0022501) #36	Ssh3 (MGP_CAROLIEiJ_G0022502) #37	Ankrd13d (MGP_CAROLIEiJ_G0022503)
Mus_B	ANCESTRAL SPECIES	16	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00940000155904.e.b.f #14	ENSGT00940000155904.e.b.e #14	ENSGT00390000001189.b #15	ENSGT00940000163374	ENSGT00940000162775 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000162460 #20	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Mouse	MODERN SPECIES	10	Tcirg1 (ENSMUSG00000001750) #9	Ndufs8 (ENSMUSG00000059734) #10	Aldh3b1 (ENSMUSG00000024885) #11	Unc93b1 (ENSMUSG00000036908) #12	Aldh3b3 (ENSMUSG00000037263) #14	Aldh3b2 (ENSMUSG00000075296) #14	Acy3 (ENSMUSG00000024866) #15	Tbx10 (ENSMUSG00000037477)	Nudt8 (ENSMUSG00000110949) #17	Doc2g (ENSMUSG00000024871) #18	Ndufv1 (ENSMUSG00000037916) #19	Gstp1 (ENSMUSG00000060803) #20	Gstp2 (ENSMUSG00000038155) #20	Gstp3 (ENSMUSG00000058216)	Cabp2 (ENSMUSG00000024857) #21	Cdk2ap2 (ENSMUSG00000024856) #22	Pitpnm1 (ENSMUSG00000024851) #23	Aip (ENSMUSG00000024847) #24	Tmem134 (ENSMUSG00000024845) #25	Cabp4 (ENSMUSG00000024842) #26	Gpr152 (ENSMUSG00000044724) #27	Coro1b (ENSMUSG00000024835) #28	Ptprcap (ENSMUSG00000045826) #29	Rps6kb2 (ENSMUSG00000024830) #30	Carns1 (ENSMUSG00000075289) #31	Tbc1d10c (ENSMUSG00000040247) #32	Ppp1ca (ENSMUSG00000040385) #33	Rad9a (ENSMUSG00000024824) #34	Clcf1 (ENSMUSG00000040663) #35	Gm45928 (ENSMUSG00000117873)	Pold4 (ENSMUSG00000024854) #36
Mus_C	ANCESTRAL SPECIES	25	ENSGT00940000156431 #7	ENSGT00950000182939.a.b.b #8	ENSGT00950000182881.a.b.a.b #9	ENSGT00390000003049 #10	ENSGT00940000162915 #11	ENSGT00530000063359.B #12	ENSGT00920000150159	ENSGT00940000155904.e.b.e #14	ENSGT00390000001189.b #15	ENSGT00940000163374	ENSGT00940000162775 #17	ENSGT00940000162875 #18	ENSGT00390000010641 #19	ENSGT00940000164125	ENSGT00940000159796 #21	ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24	ENSGT00390000011766 #25	ENSGT00940000161468 #26	ENSGT01030000234639.B #27	ENSGT00940000159031 #28	ENSGT00390000017041 #29	ENSGT00940000155062.a #30	ENSGT00390000018717.a #31	ENSGT00940000161287 #32	ENSGT00940000153472.a.b #33	ENSGT00390000005767.a #34	ENSGT00510000048856.C #35	ENSGT00390000005096 #36	ENSGT00940000160322 #37
Steppe mouse	MODERN SPECIES	3175														Gstp3 (ENSMSIG00000006920)	ENSMSIG00000006735 #21	Cdk2ap2 (ENSMSIG00000006691) #22	Pitpnm1 (ENSMSIG00000006623) #23	ENSMSIG00000006607 #24	ENSMSIG00000006594 #25	Cabp4 (ENSMSIG00000006571) #26	Gpr152 (ENSMSIG00000006566) #27	Coro1b (ENSMSIG00000006535) #28	Ptprcap (ENSMSIG00000006524) #29	Rps6kb2 (ENSMSIG00000006398) #30	Carns1 (ENSMSIG00000006360) #31	Tbc1d10c (ENSMSIG00000006331) #32	Ppp1ca (ENSMSIG00000006291) #33	Rad9a (ENSMSIG00000006213) #34	Clcf1 (ENSMSIG00000006192) #35	Pold4 (ENSMSIG00000006171) #36	ENSMSIG00000005977 #37
spretus	MODERN SPECIES	10	Kmt5b (MGP_SPRETEiJ_G0023387) #7	Chka (MGP_SPRETEiJ_G0023388) #8	MGP_SPRETEiJ_G0023389 #14	Tcirg1 (MGP_SPRETEiJ_G0023390) #9	Ndufs8 (MGP_SPRETEiJ_G0023391) #10	Aldh3b1 (MGP_SPRETEiJ_G0023392) #11	Unc93b1 (MGP_SPRETEiJ_G0023393) #12	MGP_SPRETEiJ_G0023394	Acy3 (MGP_SPRETEiJ_G0023395) #15	Tbx10 (MGP_SPRETEiJ_G0023396)	Nudt8 (MGP_SPRETEiJ_G0023397) #17	Doc2g (MGP_SPRETEiJ_G0023398) #18	Ndufv1 (MGP_SPRETEiJ_G0023399) #19	Gstp3 (MGP_SPRETEiJ_G0023400)	Cabp2 (MGP_SPRETEiJ_G0023401) #21	Cdk2ap2 (MGP_SPRETEiJ_G0023402) #22	Pitpnm1 (MGP_SPRETEiJ_G0023403) #23	MGP_SPRETEiJ_G0023404 #24	Cabp4 (MGP_SPRETEiJ_G0023405) #26	Gpr152 (MGP_SPRETEiJ_G0023406) #27	Coro1b (MGP_SPRETEiJ_G0023407) #28	Ptprcap (MGP_SPRETEiJ_G0023408) #29	Rps6kb2 (MGP_SPRETEiJ_G0023409) #30	Carns1 (MGP_SPRETEiJ_G0023410) #31	Tbc1d10c (MGP_SPRETEiJ_G0023411) #32	Ppp1ca (MGP_SPRETEiJ_G0023412) #33	Rad9a (MGP_SPRETEiJ_G0023413) #34	Clcf1 (MGP_SPRETEiJ_G0023414) #35	Pold4 (MGP_SPRETEiJ_G0023415) #36	Ssh3 (MGP_SPRETEiJ_G0023416) #37	Ankrd13d (MGP_SPRETEiJ_G0023417)
Shrew mouse	MODERN SPECIES		Chka (MGP_PahariEiJ_G0013969) #8	Tcirg1 (MGP_PahariEiJ_G0013970) #9	Ndufs8 (MGP_PahariEiJ_G0013971) #10	Aldh3b1 (MGP_PahariEiJ_G0013972) #11	Unc93b1 (MGP_PahariEiJ_G0013973) #12	MGP_PahariEiJ_G0013974	Aldh3b2 (MGP_PahariEiJ_G0013975) #14	Acy3 (MGP_PahariEiJ_G0013976) #15	Tbx10 (MGP_PahariEiJ_G0013977)	Nudt8 (MGP_PahariEiJ_G0013978) #17	Doc2g (MGP_PahariEiJ_G0013979) #18	Ndufv1 (MGP_PahariEiJ_G0013980) #19	MGP_PahariEiJ_G0013981 #20	Gstp3 (MGP_PahariEiJ_G0013982)	Cabp2 (MGP_PahariEiJ_G0013983) #21	Cdk2ap2 (MGP_PahariEiJ_G0013984) #22	Pitpnm1 (MGP_PahariEiJ_G0013985) #23	Aip (MGP_PahariEiJ_G0013986) #24	Cabp4 (MGP_PahariEiJ_G0013987) #26	Gpr152 (MGP_PahariEiJ_G0013988) #27	MGP_PahariEiJ_G0013989 #28	Ptprcap (MGP_PahariEiJ_G0013990) #29	Rps6kb2 (MGP_PahariEiJ_G0013991) #30	Carns1 (MGP_PahariEiJ_G0013992) #31	Tbc1d10c (MGP_PahariEiJ_G0013993) #32	Ppp1ca (MGP_PahariEiJ_G0013994) #33	Rad9a (MGP_PahariEiJ_G0013995) #34	Clcf1 (MGP_PahariEiJ_G0013996) #35	Pold4 (MGP_PahariEiJ_G0013997) #36	Ssh3 (MGP_PahariEiJ_G0013998) #37	Ankrd13d (MGP_PahariEiJ_G0013999)
Rat	MODERN SPECIES		Ndufs8 (ENSRNOG00000017446) #10	Aldh3b1 (ENSRNOG00000017512) #11	Unc93b1 (ENSRNOG00000017703) #12	LOC120099971 (ENSRNOG00000017872) #14	ENSRNOG00000066970 #14	ENSRNOG00000069460 #11	Aldh3b2 (ENSRNOG00000068138) #14	Tbx10 (ENSRNOG00000017944)	Acy3 (ENSRNOG00000017901) #15	Nudt8 (ENSRNOG00000017955) #17	Doc2g (ENSRNOG00000018029) #18	Ndufv1 (ENSRNOG00000018117) #19	Gstp1 (ENSRNOG00000018237) #20	Gstp3 (ENSRNOG00000018287)	Cabp2 (ENSRNOG00000018339) #21	Cdk2ap2 (ENSRNOG00000018391) #22	Pitpnm1 (ENSRNOG00000018553) #23	Aip (ENSRNOG00000022289) #24	Tmem134 (ENSRNOG00000022153) #25	Cabp4 (ENSRNOG00000022044) #26	Gpr152 (ENSRNOG00000021912) #27	Coro1b (ENSRNOG00000021828) #28	Ptprcap (ENSRNOG00000021724) #29	Rps6kb2 (ENSRNOG00000021689) #30	Carns1 (ENSRNOG00000018603) #31	Tbc1d10c (ENSRNOG00000021510) #32	Ppp1ca (ENSRNOG00000018708) #33	Rad9a (ENSRNOG00000018729) #34	Clcf1 (ENSRNOG00000018752) #35	Pold4 (ENSRNOG00000018765) #36	Ssh3 (ENSRNOG00000018878) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1818												Ndufv1 (ENSNGAG00000013048) #19	ENSNGAG00000014047 #20	Gstp3 (ENSNGAG00000000204)	Cabp2 (ENSNGAG00000014616) #21	Cdk2ap2 (ENSNGAG00000007775) #22	Pitpnm1 (ENSNGAG00000020386) #23	Aip (ENSNGAG00000020330) #24	Tmem134 (ENSNGAG00000017238) #25	Cabp4 (ENSNGAG00000015044) #26	Gpr152 (ENSNGAG00000008380) #27	Coro1b (ENSNGAG00000019821) #28	Ptprcap (ENSNGAG00000017126) #29	Rps6kb2 (ENSNGAG00000005545) #30	Carns1 (ENSNGAG00000011168) #31	ENSNGAG00000020645 #32	ENSNGAG00000015301 #33	Rad9a (ENSNGAG00000018044) #34	Clcf1 (ENSNGAG00000013064) #35	Pold4 (ENSNGAG00000010450) #36	Ssh3 (ENSNGAG00000000431) #37
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	60	ENSJJAG00000017165 #7	Chka (ENSJJAG00000012227) #8	Tcirg1 (ENSJJAG00000017427) #9	Ndufs8 (ENSJJAG00000005023) #10	Aldh3b1 (ENSJJAG00000020011) #11	Unc93b1 (ENSJJAG00000023583) #12	ENSJJAG00000023409 #14	Acy3 (ENSJJAG00000019193) #15	Tbx10 (ENSJJAG00000022634)	Nudt8 (ENSJJAG00000023328) #17	Doc2g (ENSJJAG00000021341) #18	Ndufv1 (ENSJJAG00000017874) #19	ENSJJAG00000023512 #20	Gstp3 (ENSJJAG00000024233)	Cabp2 (ENSJJAG00000018419) #21	ENSJJAG00000013896 #22	ENSJJAG00000003374 #23	Aip (ENSJJAG00000015345) #24	Tmem134 (ENSJJAG00000016692) #25	Cabp4 (ENSJJAG00000011101) #26	Gpr152 (ENSJJAG00000022981) #27	ENSJJAG00000001838 #28	ENSJJAG00000016182 #30	Carns1 (ENSJJAG00000018930) #31	Tbc1d10c (ENSJJAG00000004622) #32	Ppp1ca (ENSJJAG00000010290) #33	Rad9a (ENSJJAG00000013292) #34	Clcf1 (ENSJJAG00000019178) #35	Pold4 (ENSJJAG00000015752) #36	Ssh3 (ENSJJAG00000013515) #37	Ankrd13d (ENSJJAG00000020972)
Lesser Egyptian jerboa	MODERN SPECIES	176																ENSJJAG00000013797 #22	Slc24a5 (ENSJJAG00000017458)	ENSJJAG00000015428	Ctxn2 (ENSJJAG00000013770)	Slc12a1 (ENSJJAG00000009847)	Fbn1 (ENSJJAG00000018173)	Eid1 (ENSJJAG00000022180)	Shc4 (ENSJJAG00000021146)	ENSJJAG00000017576	Secisbp2l (ENSJJAG00000014644)	Cops2 (ENSJJAG00000012737)	ENSJJAG00000012276	ENSJJAG00000011858	ENSJJAG00000011328	Galk2 (ENSJJAG00000010967)	Fgf7 (ENSJJAG00000010425)
Lagomorpha	ANCESTRAL SPECIES	439																ENSGT00940000160334 #22	ENSGT00940000161522 #23	ENSGT00390000001289.a #24
Pika	MODERN SPECIES	4837															ENSOPRG00000002333	CDK2AP2 (ENSOPRG00000002323) #22	PITPNM1 (ENSOPRG00000002254) #23	AIP (ENSOPRG00000002244) #24