Euarchontoglires	ANCESTRAL SPECIES	13	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00910000147039	ENSGT00940000157683 #23	ENSGT00910000146930	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00910000147396
Euarchontoglires_A	ANCESTRAL SPECIES	17	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00910000147039	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639
Glires	ANCESTRAL SPECIES	18	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00910000147039	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639
Rodentia	ANCESTRAL SPECIES	12	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00910000147039	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639
Rodentia_A	ANCESTRAL SPECIES	12	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639	ENSGT00940000162637
Sciuridae	ANCESTRAL SPECIES	7	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639	ENSGT00940000162637
Marmotini	ANCESTRAL SPECIES	35	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639	ENSGT00940000162637
Marmotini_b	ANCESTRAL SPECIES	66	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00390000009212.i.a.a #21	ENSGT00940000159188 #22	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639	ENSGT00940000162637
Squirrel	MODERN SPECIES	185				NXPH1 (ENSSTOG00000024868) #10	ICA1 (ENSSTOG00000004278) #11	GLCCI1 (ENSSTOG00000021063) #12	UMAD1 (ENSSTOG00000034216) #13	RPA3 (ENSSTOG00000031875) #14	MIOS (ENSSTOG00000014620) #15	COL28A1 (ENSSTOG00000023884) #16	C1GALT1 (ENSSTOG00000028307) #17	ASNS (ENSSTOG00000005421) #18	TAC1 (ENSSTOG00000005410) #19	ENSSTOG00000034550 #20	ENSSTOG00000034315 #21	DLX5 (ENSSTOG00000005162) #22	DLX6 (ENSSTOG00000020785) #23	SEM1 (ENSSTOG00000011501) #24	SLC25A13 (ENSSTOG00000008106) #25	DYNC1I1 (ENSSTOG00000008078) #26	Pdk4 (ENSSTOG00000021060) #27	ASB4 (ENSSTOG00000026077) #28	PON2 (ENSSTOG00000011912) #29	PON3 (ENSSTOG00000025896) #30	PON1 (ENSSTOG00000011900) #31	ENSSTOG00000029077 #32	ENSSTOG00000030680 #33	ENSSTOG00000026064 #34	PEG10 (ENSSTOG00000022801) #35	SGCE (ENSSTOG00000001868) #36	CASD1 (ENSSTOG00000010829) #37
Arctic ground squirrel	MODERN SPECIES	91				ICA1 (ENSUPAG00010018725) #11	GLCCI1 (ENSUPAG00010018705) #12	UMAD1 (ENSUPAG00010018691) #13	RPA3 (ENSUPAG00010018685) #14	MIOS (ENSUPAG00010018670) #15	ENSUPAG00010018666	COL28A1 (ENSUPAG00010018619) #16	C1GALT1 (ENSUPAG00010018594) #17	ASNS (ENSUPAG00010018582) #18	TAC1 (ENSUPAG00010018539) #19	SDHAF3 (ENSUPAG00010018532) #20	ENSUPAG00010018528 #21	DLX5 (ENSUPAG00010018520) #22	DLX6 (ENSUPAG00010018504) #23	SEM1 (ENSUPAG00010018488) #24	SLC25A13 (ENSUPAG00010018426) #25	DYNC1I1 (ENSUPAG00010018338) #26	PDK4 (ENSUPAG00010018316) #27	ASB4 (ENSUPAG00010018314) #28	PON2 (ENSUPAG00010018303) #29	PON3 (ENSUPAG00010018287) #30	PON1 (ENSUPAG00010018258) #31	PPP1R9A (ENSUPAG00010015293) #33	ENSUPAG00010015260 #35	SGCE (ENSUPAG00010014956) #36	CASD1 (ENSUPAG00010014912) #37	COL1A2 (ENSUPAG00010014832)	BET1 (ENSUPAG00010014824)
Alpin marmot	MODERN SPECIES	22	PHF14 (ENSMMMG00000013854)	NDUFA4 (ENSMMMG00000013836)	NXPH1 (ENSMMMG00000013827) #10	ICA1 (ENSMMMG00000013715) #11	GLCCI1 (ENSMMMG00000013684) #12	UMAD1 (ENSMMMG00000013672) #13	RPA3 (ENSMMMG00000013664) #14	MIOS (ENSMMMG00000013649) #15	ENSMMMG00000013638	COL28A1 (ENSMMMG00000013600) #16	C1GALT1 (ENSMMMG00000013591) #17	ASNS (ENSMMMG00000013577) #18	TAC1 (ENSMMMG00000013539) #19	SDHAF3 (ENSMMMG00000013528) #20	ENSMMMG00000013521 ##21	DLX5 (ENSMMMG00000013512) #22	DLX6 (ENSMMMG00000013501) #23	ENSMMMG00000013494	SEM1 (ENSMMMG00000013480) #24	SLC25A13 (ENSMMMG00000013399) #25	DYNC1I1 (ENSMMMG00000013269) #26	PDK4 (ENSMMMG00000013241) #27	ASB4 (ENSMMMG00000013230) #28	BET1 (ENSMMMG00000013215)	COL1A2 (ENSMMMG00000013132)	CASD1 (ENSMMMG00000013107) #37	SGCE (ENSMMMG00000012980) #36	ENSMMMG00000012971 #35	PPP1R9A (ENSMMMG00000012538) #33	PON1 (ENSMMMG00000012515) #31	PON3 (ENSMMMG00000012511) #30
Eurasian red squirrel	MODERN SPECIES	17	PHF14 (ENSSVLG00005004805)	ENSSVLG00005004917	ENSSVLG00005004936	NXPH1 (ENSSVLG00005004963) #10	ICA1 (ENSSVLG00005005008) #11	GLCCI1 (ENSSVLG00005005120) #12	UMAD1 (ENSSVLG00005005159) #13	ENSSVLG00005005197 #14	MIOS (ENSSVLG00005005256) #15	COL28A1 (ENSSVLG00005005316) #16	ENSSVLG00005005474 #17	ASNS (ENSSVLG00005005522) #18	TAC1 (ENSSVLG00005005619) #19	ENSSVLG00005005692	SDHAF3 (ENSSVLG00005005726) #20	DLX5 (ENSSVLG00005005760) #22	DLX6 (ENSSVLG00005005785) #23	SEM1 (ENSSVLG00005005837) #24	SLC25A13 (ENSSVLG00005005915) #25	DYNC1I1 (ENSSVLG00005006176) #26	PDK4 (ENSSVLG00005006655) #27	ASB4 (ENSSVLG00005006747) #28	PON2 (ENSSVLG00005006826) #29	ENSSVLG00005006855	PON3 (ENSSVLG00005006880) #30	PON1 (ENSSVLG00005006959) #31	PPP1R9A (ENSSVLG00005007147) #33	ENSSVLG00005007478	ENSSVLG00005007534	PEG10 (ENSSVLG00005007575) #35	SGCE (ENSSVLG00005007757) #36
Hystricomorpha	ANCESTRAL SPECIES	14	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b.l #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639	ENSGT00940000162637
Naked mole-rat female	MODERN SPECIES	5	ENSHGLG00000038096	ICA1 (ENSHGLG00000003048) #11	GLCCI1 (ENSHGLG00000002931) #12	ENSHGLG00000002785	ENSHGLG00000034935	ENSHGLG00000037539 #13	ENSHGLG00000039732 #14	MIOS (ENSHGLG00000001710) #15	ENSHGLG00000001680	ENSHGLG00000001565 #16	ENSHGLG00000001496 #17	ENSHGLG00000001445 #18	TAC1 (ENSHGLG00000001397) #19	ACN9 (ENSHGLG00000001283) #20	ENSHGLG00000003962	DLX5 (ENSHGLG00000035624) #22	DLX6 (ENSHGLG00000036463) #23	SEM1 (ENSHGLG00000001228) #24	SLC25A13 (ENSHGLG00000001078) #25	ENSHGLG00000008153	ENSHGLG00000000847	DYNC1I1 (ENSHGLG00000000924) #26	PDK4 (ENSHGLG00000044007) #27	ASB4 (ENSHGLG00000000818) #28	PON2 (ENSHGLG00000044448) #29	PON3 (ENSHGLG00000003028) #30	PON1 (ENSHGLG00000048207) #31	PPP1R9A (ENSHGLG00000002745) #33	Peg10 (ENSHGLG00000039925) #35	SGCE (ENSHGLG00000002437) #36	CASD1 (ENSHGLG00000002281) #37
Hystricomorpha_a	ANCESTRAL SPECIES	43	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b.l #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639	ENSGT00940000162637
Guinea pig	MODERN SPECIES	11	THSD7A (ENSCPOG00000000279)	ENSCPOG00000040423	PHF14 (ENSCPOG00000002218)	NDUFA4 (ENSCPOG00000036788)	NXPH1 (ENSCPOG00000006994) #10	ICA1 (ENSCPOG00000021862) #11	GLCCI1 (ENSCPOG00000037962) #12	UMAD1 (ENSCPOG00000030933) #13	RPA3 (ENSCPOG00000036936) #14	MIOS (ENSCPOG00000011743) #15	COL28A1 (ENSCPOG00000021196) #16	ENSCPOG00000033504 #17	ENSCPOG00000009841 #18	TAC1 (ENSCPOG00000011245) #19	SDHAF3 (ENSCPOG00000014057) #20	DLX5 (ENSCPOG00000001796) #22	DLX6 (ENSCPOG00000001795) #23	SEM1 (ENSCPOG00000035520) #24	SLC25A13 (ENSCPOG00000013200) #25	ENSCPOG00000011054 #26	ENSCPOG00000037546 #26	PDK4 (ENSCPOG00000033399) #27	ASB4 (ENSCPOG00000014245) #28	PON2 (ENSCPOG00000007257) #29	PON3 (ENSCPOG00000039258) #30	PON1 (ENSCPOG00000037806) #31	ENSCPOG00000010259	PPP1R9A (ENSCPOG00000011567) #33	ENSCPOG00000037165 ##35	SGCE (ENSCPOG00000010672) #36	CASD1 (ENSCPOG00000033243) #37
Hystricomorpha_b	ANCESTRAL SPECIES	62	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b.l #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639	ENSGT00940000162637
Long-tailed chinchilla	MODERN SPECIES	139	THSD7A (ENSCLAG00000003554)	PHF14 (ENSCLAG00000004153)	NDUFA4 (ENSCLAG00000004050)	NXPH1 (ENSCLAG00000003986) #10	ICA1 (ENSCLAG00000003729) #11	GLCCI1 (ENSCLAG00000003639) #12	UMAD1 (ENSCLAG00000003569) #13	RPA3 (ENSCLAG00000003500) #14	MIOS (ENSCLAG00000003461) #15	COL28A1 (ENSCLAG00000003344) #16	C1GALT1 (ENSCLAG00000003286) #17	ENSCLAG00000003237 #18	ENSCLAG00000003157 #18	TAC1 (ENSCLAG00000003086) #19	SDHAF3 (ENSCLAG00000003011) #20	DLX5 (ENSCLAG00000002987) #22	DLX6 (ENSCLAG00000002971) #23	SEM1 (ENSCLAG00000002949) #24	SLC25A13 (ENSCLAG00000002917) #25	DYNC1I1 (ENSCLAG00000006396) #26	PDK4 (ENSCLAG00000017289) #27	ASB4 (ENSCLAG00000009834) #28	PON2 (ENSCLAG00000009728) #29	PON3 (ENSCLAG00000009609) #30	PON1 (ENSCLAG00000009506) #31	PPP1R9A (ENSCLAG00000008731) #33	Peg10 (ENSCLAG00000017695) #35	SGCE (ENSCLAG00000007837) #36	CASD1 (ENSCLAG00000007565) #37	COL1A2 (ENSCLAG00000009286)	BET1 (ENSCLAG00000008520)
Degu	MODERN SPECIES	91															SDHAF3 (ENSODEG00000009620) #20	DLX5 (ENSODEG00000010609) #22	DLX6 (ENSODEG00000010072) #23	ENSODEG00000010570 #24	SLC25A13 (ENSODEG00000011496) #25	DYNC1I1 (ENSODEG00000010855) #26	PDK4 (ENSODEG00000010586) #27	ASB4 (ENSODEG00000010657) #28	PON2 (ENSODEG00000010755) #29	PON3 (ENSODEG00000011235) #30	PON1 (ENSODEG00000009868) #31	PPP1R9A (ENSODEG00000010739) #33	PEG10 (ENSODEG00000009969) #35	ENSODEG00000009551 #36	CASD1 (ENSODEG00000010520) #37	COL1A2 (ENSODEG00000010146)	ENSODEG00000010232
Rodentia_B	ANCESTRAL SPECIES	9	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00910000147039	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639
Myomorpha	ANCESTRAL SPECIES	8	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00910000147039	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639
Muroidea	ANCESTRAL SPECIES	8	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00910000147039	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00910000147039	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639	ENSGT00940000163414
Cricetinae	ANCESTRAL SPECIES	23	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639	ENSGT00940000163414
Golden Hamster	MODERN SPECIES	756						ENSMAUG00000008585 #11	Glcci1 (ENSMAUG00000009620) #12	Umad1 (ENSMAUG00000011521) #13	ENSMAUG00000000402 #14	Mios (ENSMAUG00000009947) #15	Col28a1 (ENSMAUG00000020116) #16	C1galt1 (ENSMAUG00000011248) #17	Asns (ENSMAUG00000004155) #18	Tac1 (ENSMAUG00000000832) #19	Sdhaf3 (ENSMAUG00000020491) #20	Dlx5 (ENSMAUG00000002760) #22	Dlx6 (ENSMAUG00000017933) #23	Sem1 (ENSMAUG00000016213) #24	Slc25a13 (ENSMAUG00000013308) #25	Dync1i1 (ENSMAUG00000012920) #26	Pdk4 (ENSMAUG00000014529) #27	Asb4 (ENSMAUG00000017354) #28	Pon2 (ENSMAUG00000019926) #29	Pon3 (ENSMAUG00000007231) #30	Pon1 (ENSMAUG00000016513) #31	Ppp1r9a (ENSMAUG00000017217) #33	Peg10 (ENSMAUG00000018656) #35	Sgce (ENSMAUG00000022202) #36	Casd1 (ENSMAUG00000017786) #37	Col1a2 (ENSMAUG00000018627)	Bet1 (ENSMAUG00000021863)
Chinese hamster chok1gshd	MODERN SPECIES	54	Phf14 (ENSCGRG00001004536)	Ndufa4 (ENSCGRG00001012421)	ENSCGRG00001013970	ENSCGRG00001004842	Nxph1 (ENSCGRG00001017708) #10	Ica1 (ENSCGRG00001013759) #11	Glcci1 (ENSCGRG00001020867) #12	Umad1 (ENSCGRG00001019337) #13	Rpa3 (ENSCGRG00001004183) #14	Mios (ENSCGRG00001022654) #15	Col28a1 (ENSCGRG00001018669) #16	ENSCGRG00001016873 #17	ASNS (ENSCGRG00001015428) #18	Tac1 (ENSCGRG00001020738) #19	Sdhaf3 (ENSCGRG00001012553) #20	Dlx5 (ENSCGRG00001001362) #22	Dlx6 (ENSCGRG00001015244) #23	ENSCGRG00001016396	Sem1 (ENSCGRG00001000539) #24	ENSCGRG00001023047	Slc25a13 (ENSCGRG00001024718) #25	ENSCGRG00001003096 #26	ENSCGRG00001022786 #26	Pdk4 (ENSCGRG00001014183) #27	Asb4 (ENSCGRG00001002568) #28	Pon2 (ENSCGRG00001017926) #29	Pon3 (ENSCGRG00001017513) #30	Pon1 (ENSCGRG00001017580) #31	ENSCGRG00001022001 #33	ENSCGRG00001012942 #33	ENSCGRG00001010002 #35
Cricetidae_B	ANCESTRAL SPECIES	10	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639	ENSGT00940000163414
Prairie vole	MODERN SPECIES	350	ENSMOCG00000008159	Phf14 (ENSMOCG00000016636)	Ndufa4 (ENSMOCG00000021704)	Nxph1 (ENSMOCG00000015073) #10	ENSMOCG00000008517 #11	ENSMOCG00000019705 #11	Glcci1 (ENSMOCG00000011098) #12	Umad1 (ENSMOCG00000016635) #13	Rpa3 (ENSMOCG00000011090) #14	Mios (ENSMOCG00000017559) #15	Col28a1 (ENSMOCG00000012197) #16	C1galt1 (ENSMOCG00000009499) #17	Asns (ENSMOCG00000011530) #18	Tac1 (ENSMOCG00000014686) #19	Sdhaf3 (ENSMOCG00000004621) #20	Dlx5 (ENSMOCG00000021591) #22	Dlx6 (ENSMOCG00000010083) #23	Sem1 (ENSMOCG00000001349) #24	Slc25a13 (ENSMOCG00000010461) #25	Dync1i1 (ENSMOCG00000016558) #26	Pdk4 (ENSMOCG00000011306) #27	Asb4 (ENSMOCG00000000254) #28	Pon2 (ENSMOCG00000013410) #29	Pon3 (ENSMOCG00000013174) #30	Pon1 (ENSMOCG00000007036) #31	Ppp1r9a (ENSMOCG00000010035) #33	Peg10 (ENSMOCG00000003210) #35	Sgce (ENSMOCG00000011802) #36	Casd1 (ENSMOCG00000020135) #37	Col1a2 (ENSMOCG00000009504)	ENSMOCG00000013219
Northern American deer mouse	MODERN SPECIES	16	Thsd7a (ENSPEMG00000011896)	Phf14 (ENSPEMG00000013539)	Ndufa4 (ENSPEMG00000013663)	ENSPEMG00000002763	Nxph1 (ENSPEMG00000006871) #10	Ica1 (ENSPEMG00000011992) #11	Glcci1 (ENSPEMG00000006869) #12	ENSPEMG00000025657	Rpa3 (ENSPEMG00000028617) #14	Mios (ENSPEMG00000014859) #15	Col28a1 (ENSPEMG00000018994) #16	C1galt1 (ENSPEMG00000001879) #17	Asns (ENSPEMG00000024254) #18	Tac1 (ENSPEMG00000023534) #19	Sdhaf3 (ENSPEMG00000025504) #20	Dlx5 (ENSPEMG00000010445) #22	Dlx6 (ENSPEMG00000003902) #23	Sem1 (ENSPEMG00000023151) #24	Slc25a13 (ENSPEMG00000010195) #25	Dync1i1 (ENSPEMG00000009653) #26	Pdk4 (ENSPEMG00000000623) #27	Asb4 (ENSPEMG00000021425) #28	Pon2 (ENSPEMG00000022778) #29	Pon3 (ENSPEMG00000029851) #30	Pon1 (ENSPEMG00000021811) #31	Ppp1r9a (ENSPEMG00000023259) #33	ENSPEMG00000031065	Peg10 (ENSPEMG00000028270) #35	Sgce (ENSPEMG00000012336) #36	Casd1 (ENSPEMG00000014646) #37	Col1a2 (ENSPEMG00000011603)
Murinae	ANCESTRAL SPECIES	4	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00910000147039	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639
Mus	ANCESTRAL SPECIES	20	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00910000147039	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639
Mus_A	ANCESTRAL SPECIES	7	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b.n #12	ENSGT00390000003051.c #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00910000147039	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639
Mus_B	ANCESTRAL SPECIES	20	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b.n #12	ENSGT00390000003051.c #13	ENSGT00390000008029.k #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00910000147039	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639
Mus_C	ANCESTRAL SPECIES	19	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b.n #12	ENSGT00390000003051.c #13	ENSGT00390000008029.k #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00910000147039	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639	ENSGT00940000163414
spretus	MODERN SPECIES	15	Thsd7a (MGP_SPRETEiJ_G0029104)	MGP_SPRETEiJ_G0029103	Ndufa4 (MGP_SPRETEiJ_G0029102)	Nxph1 (MGP_SPRETEiJ_G0029101) #10	Ica1 (MGP_SPRETEiJ_G0029100) #11	Glcci1 (MGP_SPRETEiJ_G0029099) #12	MGP_SPRETEiJ_G0029098 #13	Umad1 (MGP_SPRETEiJ_G0029097) #13	Rpa3 (MGP_SPRETEiJ_G0029096) #14	Mios (MGP_SPRETEiJ_G0029095) #15	Col28a1 (MGP_SPRETEiJ_G0029094) #16	C1galt1 (MGP_SPRETEiJ_G0029093) #17	Asns (MGP_SPRETEiJ_G0029092) #18	Tac1 (MGP_SPRETEiJ_G0029091) #19	Sdhaf3 (MGP_SPRETEiJ_G0029090) #20	Dlx5 (MGP_SPRETEiJ_G0029089) #22	Dlx6 (MGP_SPRETEiJ_G0029088) #23	Sem1 (MGP_SPRETEiJ_G0029087) #24	Slc25a13 (MGP_SPRETEiJ_G0029086) #25	Dync1i1 (MGP_SPRETEiJ_G0029085) #26	Pdk4 (MGP_SPRETEiJ_G0029084) #27	Asb4 (MGP_SPRETEiJ_G0029083) #28	Pon2 (MGP_SPRETEiJ_G0029082) #29	MGP_SPRETEiJ_G0029081 #30	Pon1 (MGP_SPRETEiJ_G0029080) #31	Ppp1r9a (MGP_SPRETEiJ_G0029079) #33	MGP_SPRETEiJ_G0029078 ##35	Sgce (MGP_SPRETEiJ_G0029077) #36	Casd1 (MGP_SPRETEiJ_G0029076) #37	Col1a2 (MGP_SPRETEiJ_G0029075)	Bet1 (MGP_SPRETEiJ_G0029074)
Steppe mouse	MODERN SPECIES	3097															ENSMSIG00000007764 #20	Dlx5 (ENSMSIG00000007781) #22	ENSMSIG00000007792	Dlx6 (ENSMSIG00000007812) #23	Sem1 (ENSMSIG00000007847) #24	Slc25a13 (ENSMSIG00000007876) #25	Dync1i1 (ENSMSIG00000007953) #26	ENSMSIG00000008217	Pdk4 (ENSMSIG00000008220) #27	Asb4 (ENSMSIG00000008239) #28	Pon2 (ENSMSIG00000008259) #29	Pon3 (ENSMSIG00000008274) #30	Pon1 (ENSMSIG00000008292) #31	Ppp1r9a (ENSMSIG00000008364) #33
Mouse	MODERN SPECIES	15	Tmem106b (ENSMUSG00000029571)	Thsd7a (ENSMUSG00000032625)	Phf14 (ENSMUSG00000029629)	Ndufa4 (ENSMUSG00000029632)	Nxph1 (ENSMUSG00000046178) #10	Ica1 (ENSMUSG00000062995) #11	Glcci1 (ENSMUSG00000029638) #12	Umad1 (ENSMUSG00000089862) #13	Rpa3 (ENSMUSG00000012483) #14	Mios (ENSMUSG00000042447) #15	Col28a1 (ENSMUSG00000068794) #16	C1galt1 (ENSMUSG00000042460) #17	Asns (ENSMUSG00000029752) #18	Tac1 (ENSMUSG00000061762) #19	Sdhaf3 (ENSMUSG00000042505) #20	Dlx5 (ENSMUSG00000029755) #22	Dlx6 (ENSMUSG00000029754) #23	Sem1 (ENSMUSG00000042541) #24	Slc25a13 (ENSMUSG00000015112) #25	Dync1i1 (ENSMUSG00000029757) #26	Pdk4 (ENSMUSG00000019577) #27	Asb4 (ENSMUSG00000042607) #28	Pon2 (ENSMUSG00000032667) #29	Pon3 (ENSMUSG00000029759) #30	Pon1 (ENSMUSG00000002588) #31	Ppp1r9a (ENSMUSG00000032827) #33	Peg10 (ENSMUSG00000092035) #35	Sgce (ENSMUSG00000004631) #36	Casd1 (ENSMUSG00000015189) #37	Col1a2 (ENSMUSG00000029661)	Bet1 (ENSMUSG00000032757)
Ryukyu mouse	MODERN SPECIES	15	MGP_CAROLIEiJ_G0028104	MGP_CAROLIEiJ_G0028103	Ndufa4 (MGP_CAROLIEiJ_G0028102)	Nxph1 (MGP_CAROLIEiJ_G0028101) #10	Ica1 (MGP_CAROLIEiJ_G0028100) #11	Glcci1 (MGP_CAROLIEiJ_G0028099) #12	MGP_CAROLIEiJ_G0028098 #13	Umad1 (MGP_CAROLIEiJ_G0028097) #13	Rpa3 (MGP_CAROLIEiJ_G0028096) #14	Mios (MGP_CAROLIEiJ_G0028095) #15	Col28a1 (MGP_CAROLIEiJ_G0028094) #16	C1galt1 (MGP_CAROLIEiJ_G0028093) #17	Asns (MGP_CAROLIEiJ_G0028092) #18	Tac1 (MGP_CAROLIEiJ_G0028091) #19	Sdhaf3 (MGP_CAROLIEiJ_G0028090) #20	Dlx5 (MGP_CAROLIEiJ_G0028089) #22	Dlx6 (MGP_CAROLIEiJ_G0028088) #23	Sem1 (MGP_CAROLIEiJ_G0028087) #24	MGP_CAROLIEiJ_G0028086 #25	Dync1i1 (MGP_CAROLIEiJ_G0028085) #26	Pdk4 (MGP_CAROLIEiJ_G0028084) #27	Asb4 (MGP_CAROLIEiJ_G0028083) #28	Pon2 (MGP_CAROLIEiJ_G0028082) #29	Pon3 (MGP_CAROLIEiJ_G0028081) #30	Pon1 (MGP_CAROLIEiJ_G0028080) #31	Ppp1r9a (MGP_CAROLIEiJ_G0028079) #33	MGP_CAROLIEiJ_G0028078 #35	Sgce (MGP_CAROLIEiJ_G0028077) #36	Casd1 (MGP_CAROLIEiJ_G0028076) #37	Col1a2 (MGP_CAROLIEiJ_G0028075)	Bet1 (MGP_CAROLIEiJ_G0028074)
Shrew mouse	MODERN SPECIES	11	Tmem106b (MGP_PahariEiJ_G0021861)	Thsd7a (MGP_PahariEiJ_G0021860)	MGP_PahariEiJ_G0021859	Ndufa4 (MGP_PahariEiJ_G0021858)	Nxph1 (MGP_PahariEiJ_G0021857) #10	Ica1 (MGP_PahariEiJ_G0021856) #11	Glcci1 (MGP_PahariEiJ_G0021855) #12	MGP_PahariEiJ_G0021854 #13	MGP_PahariEiJ_G0021853 #13	Rpa3 (MGP_PahariEiJ_G0021852) #14	Mios (MGP_PahariEiJ_G0021851) #15	Col28a1 (MGP_PahariEiJ_G0021850) #16	C1galt1 (MGP_PahariEiJ_G0021849) #17	Asns (MGP_PahariEiJ_G0021848) #18	Tac1 (MGP_PahariEiJ_G0021847) #19	Dlx5 (MGP_PahariEiJ_G0021845) #22	Dlx6 (MGP_PahariEiJ_G0021844) #23	Sem1 (MGP_PahariEiJ_G0021843) #24	Slc25a13 (MGP_PahariEiJ_G0021842) #25	Dync1i1 (MGP_PahariEiJ_G0021841) #26	Pdk4 (MGP_PahariEiJ_G0021840) #27	Asb4 (MGP_PahariEiJ_G0021839) #28	Pon2 (MGP_PahariEiJ_G0021838) #29	Pon3 (MGP_PahariEiJ_G0021837) #30	Pon1 (MGP_PahariEiJ_G0021836) #31	Ppp1r9a (MGP_PahariEiJ_G0021835) #33	MGP_PahariEiJ_G0021834 ##35	Sgce (MGP_PahariEiJ_G0021833) #36	Casd1 (MGP_PahariEiJ_G0021832) #37	Col1a2 (MGP_PahariEiJ_G0021831)	Bet1 (MGP_PahariEiJ_G0021830)
Rat	MODERN SPECIES	14	ENSRNOG00000066267	LOC680964 (ENSRNOG00000047566)	ENSRNOG00000065391	LOC500028 (ENSRNOG00000008962)	Rps4x-ps9 (ENSRNOG00000029574)	Nxph1 (ENSRNOG00000008939) #10	Ica1 (ENSRNOG00000008628) #11	Glcci1 (ENSRNOG00000008524) #12	Rpa3 (ENSRNOG00000008309) #14	Mios (ENSRNOG00000007924) #15	Col28a1 (ENSRNOG00000033618) #16	C1galt1 (ENSRNOG00000007804) #17	Polr1d-ps1 (ENSRNOG00000065557)	Asns (ENSRNOG00000007546) #18	Sdhaf3 (ENSRNOG00000011283) #20	Dlx5 (ENSRNOG00000010905) #22	ENSRNOG00000068262	Dlx6 (ENSRNOG00000063630) #23	Sem1 (ENSRNOG00000010420) #24	LOC108350671 (ENSRNOG00000064781)	Slc25a13 (ENSRNOG00000009957) #25	Dync1i1 (ENSRNOG00000009700) #26	AC095825.1 (ENSRNOG00000033695)	Pdk4 (ENSRNOG00000009565) #27	ENSRNOG00000069335	Asb4 (ENSRNOG00000009197) #28	Pon2 (ENSRNOG00000009112) #29	Pon3 (ENSRNOG00000009096) #30	Pon1 (ENSRNOG00000008902) #31	Ppp1r9a (ENSRNOG00000008869) #33	Peg10 (ENSRNOG00000066798) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	1733									Rpa3 (ENSNGAG00000023730) #14	ENSNGAG00000001986 #15	Col28a1 (ENSNGAG00000003512) #16	ENSNGAG00000013857 #17	Asns (ENSNGAG00000015284) #18	Tac1 (ENSNGAG00000013565) #19	Sdhaf3 (ENSNGAG00000019837) #20	Dlx5 (ENSNGAG00000013507) #22	Dlx6 (ENSNGAG00000023627) #23	Sem1 (ENSNGAG00000004905) #24	Slc25a13 (ENSNGAG00000004196) #25	Dync1i1 (ENSNGAG00000010254) #26
Lesser Egyptian jerboa	MODERN SPECIES	59	Kcnk9 (ENSJJAG00000018506)	ENSJJAG00000005425	Nxph1 (ENSJJAG00000020417) #10	ENSJJAG00000021248 #11	ENSJJAG00000024066 #12	Umad1 (ENSJJAG00000021097) #13	ENSJJAG00000022866	Rpa3 (ENSJJAG00000005379) #14	Mios (ENSJJAG00000020004) #15	Col28a1 (ENSJJAG00000022460) #16	ENSJJAG00000024015 #17	Asns (ENSJJAG00000011697) #18	ENSJJAG00000011602	Tac1 (ENSJJAG00000013765) #19	Sdhaf3 (ENSJJAG00000008045) #20	Dlx5 (ENSJJAG00000021396) #22	Dlx6 (ENSJJAG00000009741) #23	ENSJJAG00000021424	Sem1 (ENSJJAG00000021778) #24	Slc25a13 (ENSJJAG00000013214) #25	Dync1i1 (ENSJJAG00000005705) #26	Pdk4 (ENSJJAG00000006344) #27	Asb4 (ENSJJAG00000014914) #28	Pon2 (ENSJJAG00000014340) #29	Pon3 (ENSJJAG00000014617) #30	Pon1 (ENSJJAG00000019417) #31	Ppp1r9a (ENSJJAG00000014236) #33	ENSJJAG00000004763	Peg10 (ENSJJAG00000011361) #35	Sgce (ENSJJAG00000017688) #36	Casd1 (ENSJJAG00000013202) #37
Kangaroo rat	MODERN SPECIES	541														ENSDORG00000025132	Sdhaf3 (ENSDORG00000026031) #20	Dlx5 (ENSDORG00000009583) #22	ENSDORG00000009580 #23	Sem1 (ENSDORG00000000070) #24	Slc25a13 (ENSDORG00000013071) #25	Dync1i1 (ENSDORG00000013069) #26	Pdk4 (ENSDORG00000014682) #27	Asb4 (ENSDORG00000014681) #28	Pon2 (ENSDORG00000014680) #29	Pon3 (ENSDORG00000014679) #30	Pon1 (ENSDORG00000013493) #31	Ppp1r9a (ENSDORG00000013490) #33	Peg10 (ENSDORG00000008758) #35	Sgce (ENSDORG00000008753) #36	Casd1 (ENSDORG00000008747) #37
Lagomorpha	ANCESTRAL SPECIES	50	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.e.b	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00940000157683 #23	ENSGT00940000163409	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639	ENSGT00940000162637
Pika	MODERN SPECIES	14																DLX5 (ENSOPRG00000001891) #22
Rabbit	MODERN SPECIES	1	ENSOCUG00000035586	NXPH1 (ENSOCUG00000012983) #10	ENSOCUG00000027084	ICA1 (ENSOCUG00000016815) #11	ENSOCUG00000016806 #12	UMAD1 (ENSOCUG00000035573) #13	ENSOCUG00000034765	RPA3 (ENSOCUG00000000467) #14	MIOS (ENSOCUG00000000466) #15	ENSOCUG00000000464	COL28A1 (ENSOCUG00000024805) #16	ENSOCUG00000026002 #17	ASNS (ENSOCUG00000022945) #18	ENSOCUG00000006182 #19	ENSOCUG00000015296 #20	DLX5 (ENSOCUG00000008599) #22	DLX6 (ENSOCUG00000008609) #23	ENSOCUG00000025551	ENSOCUG00000026246	SLC25A13 (ENSOCUG00000009953) #25	DYNC1I1 (ENSOCUG00000012213) #26	ENSOCUG00000025405	PDK4 (ENSOCUG00000017120) #27	ASB4 (ENSOCUG00000017113) #28	PON2 (ENSOCUG00000002014) #29	PON3 (ENSOCUG00000033613) #30	PON1 (ENSOCUG00000005136) #31	PPP1R9A (ENSOCUG00000005128) #33	ENSOCUG00000027535 #35	SGCE (ENSOCUG00000012309) #36	CASD1 (ENSOCUG00000012292) #37
Tree shrew	MODERN SPECIES	2889															SDHAF3 (ENSTBEG00000006332) #20	DLX5 (ENSTBEG00000006090) #22	DLX6 (ENSTBEG00000005608) #23
Primates	ANCESTRAL SPECIES	12	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00910000147039	ENSGT00940000157683 #23	ENSGT00910000146930	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00910000147396
Strepsirrhini	ANCESTRAL SPECIES	9	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.e.a	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00910000147039	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639
Lemuriformes	ANCESTRAL SPECIES	4	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.e.a	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00910000147039	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639
Mouse lemur	MODERN SPECIES	2	PHF14 (ENSMICG00000014004)	ENSMICG00000013999	ENSMICG00000047415	NXPH1 (ENSMICG00000017518) #10	ICA1 (ENSMICG00000017517) #11	GLCCI1 (ENSMICG00000017516) #12	UMAD1 (ENSMICG00000035355) #13	RPA3 (ENSMICG00000000741) #14	MIOS (ENSMICG00000017738) #15	COL28A1 (ENSMICG00000032566) #16	C1GALT1 (ENSMICG00000011894) #17	ASNS (ENSMICG00000016357) #18	TAC1 (ENSMICG00000033534) #19	ENSMICG00000028247	ENSMICG00000036645	DLX5 (ENSMICG00000035433) #22	ENSMICG00000047116	DLX6 (ENSMICG00000014432) #23	ENSMICG00000037893	SEM1 (ENSMICG00000008928) #24	SLC25A13 (ENSMICG00000008911) #25	DYNC1I1 (ENSMICG00000008899) #26	PDK4 (ENSMICG00000005753) #27	ASB4 (ENSMICG00000005750) #28	PON2 (ENSMICG00000026757) #29	PON3 (ENSMICG00000005738) #30	PON1 (ENSMICG00000005724) #31	PPP1R9A (ENSMICG00000026651) #33	PEG10 (ENSMICG00000001469) #35	SGCE (ENSMICG00000001463) #36	CASD1 (ENSMICG00000034673) #37
Lemuriformes_a	ANCESTRAL SPECIES	91					ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00940000157683 #23	ENSGT00940000163409	ENSGT00390000002695	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639
Greater bamboo lemur	MODERN SPECIES	91					NXPH1 (ENSPSMG00000007880) #10	ICA1 (ENSPSMG00000008028) #11	GLCCI1 (ENSPSMG00000008125) #12	UMAD1 (ENSPSMG00000008140) #13	RPA3 (ENSPSMG00000008161) #14	MIOS (ENSPSMG00000008192) #15	COL28A1 (ENSPSMG00000008223) #16	C1GALT1 (ENSPSMG00000008239) #17	ASNS (ENSPSMG00000008375) #18	TAC1 (ENSPSMG00000008520) #19	ENSPSMG00000008537	DLX5 (ENSPSMG00000008549) #22	DLX6 (ENSPSMG00000008565) #23	ENSPSMG00000008588	SEM1 (ENSPSMG00000008611) #24	SLC25A13 (ENSPSMG00000008670) #25	DYNC1I1 (ENSPSMG00000008843) #26	PDK4 (ENSPSMG00000009023) #27	ASB4 (ENSPSMG00000009059) #28	PON2 (ENSPSMG00000009150) #29	PON3 (ENSPSMG00000009234) #30	PON1 (ENSPSMG00000009242) #31	PPP1R9A (ENSPSMG00000009393) #33	PEG10 (ENSPSMG00000009482) #35	SGCE (ENSPSMG00000009934) #36	CASD1 (ENSPSMG00000010248) #37	COL1A2 (ENSPSMG00000010279)
Coquerels sifaka	MODERN SPECIES	83			ENSPCOG00000018675	NXPH1 (ENSPCOG00000018464) #10	ICA1 (ENSPCOG00000003590) #11	GLCCI1 (ENSPCOG00000008498) #12	UMAD1 (ENSPCOG00000016044) #13	RPA3 (ENSPCOG00000022659) #14	MIOS (ENSPCOG00000011418) #15	COL28A1 (ENSPCOG00000022435) #16	ENSPCOG00000018949	C1GALT1 (ENSPCOG00000015839) #17	ENSPCOG00000025256 #18	TAC1 (ENSPCOG00000021374) #19	ENSPCOG00000016090 #20	DLX5 (ENSPCOG00000024882) #22	DLX6 (ENSPCOG00000018676) #23	ENSPCOG00000022335	ENSPCOG00000018050	ENSPCOG00000025433	SLC25A13 (ENSPCOG00000021703) #25	DYNC1I1 (ENSPCOG00000018842) #26	PDK4 (ENSPCOG00000015783) #27	ASB4 (ENSPCOG00000024006) #28	PON2 (ENSPCOG00000023699) #29	PON3 (ENSPCOG00000026838) #30	PON1 (ENSPCOG00000018614) #31	PPP1R9A (ENSPCOG00000026221) #33	ENSPCOG00000023235	PEG10 (ENSPCOG00000017433) #35	SGCE (ENSPCOG00000024844) #36
Bushbaby	MODERN SPECIES	120	PHF14 (ENSOGAG00000000467)	ENSOGAG00000000358	ENSOGAG00000026515	ENSOGAG00000004543	NXPH1 (ENSOGAG00000007543) #10	ICA1 (ENSOGAG00000000042) #11	GLCCI1 (ENSOGAG00000000041) #12	ENSOGAG00000001018 #14	MIOS (ENSOGAG00000008217) #15	COL28A1 (ENSOGAG00000030386) #16	ENSOGAG00000012847 #17	ASNS (ENSOGAG00000002404) #18	TAC1 (ENSOGAG00000006461) #19	ENSOGAG00000026923	ENSOGAG00000009141	DLX5 (ENSOGAG00000034605) #22	DLX6 (ENSOGAG00000014300) #23	ENSOGAG00000012040	SLC25A13 (ENSOGAG00000004654) #25	DYNC1I1 (ENSOGAG00000004652) #26	PDK4 (ENSOGAG00000008470) #27	ASB4 (ENSOGAG00000008468) #28	PON2 (ENSOGAG00000008461) #29	PON3 (ENSOGAG00000008457) #30	PON1 (ENSOGAG00000008453) #31	PPP1R9A (ENSOGAG00000008450) #33	ENSOGAG00000031169 #35	SGCE (ENSOGAG00000012026) #36	CASD1 (ENSOGAG00000012017) #37	COL1A2 (ENSOGAG00000005970)	BET1 (ENSOGAG00000005067)
Haplorrhini	ANCESTRAL SPECIES	8	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00910000147039	ENSGT00940000157683 #23	ENSGT00910000146930	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00910000147396
Tarsier	MODERN SPECIES	5722															SDHAF3 (ENSTSYG00000029415)	DLX5 (ENSTSYG00000010539) #22	DLX6 (ENSTSYG00000032196) #23
Simiiformes	ANCESTRAL SPECIES	12	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00910000147039	ENSGT00940000157683 #23	ENSGT00910000146930	ENSGT00940000163409	ENSGT00390000002695	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35
Catarrhini	ANCESTRAL SPECIES	6	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00940000155405.kb	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000.u #17	ENSGT00760000119441.b	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00910000147039	ENSGT00940000157683 #23	ENSGT00910000146930	ENSGT00940000163409	ENSGT00390000002695	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35
Hominoidea	ANCESTRAL SPECIES	6	ENSGT00940000154268.f.o	ENSGT00940000154268.f.p.a	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00940000155405.kb	ENSGT00390000003051 #13	ENSGT00390000008029.u #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000.u #17	ENSGT00760000119441.b	ENSGT00390000001994.u #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00940000157683 #23	ENSGT00910000146930	ENSGT00940000163409	ENSGT00390000002695	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36
Hominidae	ANCESTRAL SPECIES	11	ENSGT00940000156923	ENSGT00940000154268.f.o	ENSGT00940000154268.f.p.a	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00940000155405.kb	ENSGT00390000003051 #13	ENSGT00390000008029.u #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000.u #17	ENSGT00390000001994.u #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00940000157683 #23	ENSGT00910000146930	ENSGT00940000163409	ENSGT00390000002695	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	15	ENSGT00940000158690	ENSGT00390000017961	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a	ENSGT00950000183087.A.a.b.a.g.b.a.b	ENSGT00940000153560.b.b.a	ENSGT00510000048486.g.a	ENSGT00510000047886.a	ENSGT00940000161824	ENSGT00940000158475	ENSGT00940000161875.c.b	ENSGT00390000004713.d.a	ENSGT00390000001994.u #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00940000157683 #23	ENSGT00910000146930	ENSGT00940000163409	ENSGT00390000002695	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538.ab #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36
Homo/Pan group	ANCESTRAL SPECIES	15	ENSGT00940000158690	ENSGT00390000017961	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a	ENSGT00950000183087.A.a.b.a.g.b.a.b	ENSGT00940000153560.b.b.a	ENSGT00510000048486.g.a	ENSGT00510000047886.a	ENSGT00940000161824	ENSGT00940000158475	ENSGT00940000161875.c.b	ENSGT00390000004713.d.a	ENSGT00390000001994.u #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00940000157683 #23	ENSGT00910000146930	ENSGT00940000163409	ENSGT00390000002695	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538.ab #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36
Pan	ANCESTRAL SPECIES	13	ENSGT01050000244891.B	ENSGT00940000158690	ENSGT00390000017961	ENSGT00950000183188.A.b	ENSGT01060000248591.a.a.a.a	ENSGT00940000153560.b.b.a	ENSGT00510000048486.g.a	ENSGT00510000047886.a	ENSGT00940000161824	ENSGT00940000158475	ENSGT00940000161875.c.b	ENSGT00390000004713.d.a	ENSGT00390000001994.u #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00940000157683 #23	ENSGT00910000146930	ENSGT00940000163409	ENSGT00390000002695	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538.ab #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00910000147396
Bonobo	MODERN SPECIES	20	ENSPPAG00000032160	KPNA7 (ENSPPAG00000040756)	SMURF1 (ENSPPAG00000031727)	TRRAP (ENSPPAG00000036292)	TMEM130 (ENSPPAG00000016661)	ENSPPAG00000032935	BAIAP2L1 (ENSPPAG00000037144)	ENSPPAG00000031565	TECPR1 (ENSPPAG00000036532)	BHLHA15 (ENSPPAG00000038305)	LMTK2 (ENSPPAG00000032735)	ENSPPAG00000027488	ASNS (ENSPPAG00000033201) #18	TAC1 (ENSPPAG00000033152) #19	SDHAF3 (ENSPPAG00000037725) #20	DLX5 (ENSPPAG00000031068) #22	ENSPPAG00000030516 #23	ENSPPAG00000005986	ENSPPAG00000043520	ENSPPAG00000036367	SLC25A13 (ENSPPAG00000035337) #25	DYNC1I1 (ENSPPAG00000043387) #26	PDK4 (ENSPPAG00000027188) #27	ASB4 (ENSPPAG00000042126) #28	PON2 (ENSPPAG00000028759) #29	PON3 (ENSPPAG00000032766) #30	PON1 (ENSPPAG00000035549) #31	PPP1R9A (ENSPPAG00000041301) #33	PEG10 (ENSPPAG00000030053) #35	ENSPPAG00000041811	ENSPPAG00000040463
Chimpanzee	MODERN SPECIES	20	SMURF1 (ENSPTRG00000019444)	TRRAP (ENSPTRG00000019442)	TMEM130 (ENSPTRG00000045055)	NPTX2 (ENSPTRG00000019440)	ENSPTRG00000049708	BAIAP2L1 (ENSPTRG00000019438)	BRI3 (ENSPTRG00000019436)	TECPR1 (ENSPTRG00000028478)	BHLHA15 (ENSPTRG00000019434)	LMTK2 (ENSPTRG00000019433)	OCM2 (ENSPTRG00000019432)	ENSPTRG00000046532	ASNS (ENSPTRG00000019429) #18	TAC1 (ENSPTRG00000019428) #19	SDHAF3 (ENSPTRG00000019427) #20	DLX5 (ENSPTRG00000019426) #22	DLX6 (ENSPTRG00000019425) #23	ENSPTRG00000046969	ENSPTRG00000019424	ENSPTRG00000046820	SLC25A13 (ENSPTRG00000019423) #25	DYNC1I1 (ENSPTRG00000019422) #26	PDK4 (ENSPTRG00000019421) #27	ASB4 (ENSPTRG00000019420) #28	PON2 (ENSPTRG00000019419) #29	PON3 (ENSPTRG00000049985) #30	PON1 (ENSPTRG00000019417) #31	PPP1R9A (ENSPTRG00000047956) #33	ENSPTRG00000045048	PEG10 (ENSPTRG00000023648) #35	SGCE (ENSPTRG00000019411) #36
Human	MODERN SPECIES	19	ENSG00000284292	KPNA7 (ENSG00000185467)	SMURF1 (ENSG00000198742)	TRRAP (ENSG00000196367)	TMEM130 (ENSG00000166448)	NPTX2 (ENSG00000106236)	BAIAP2L1 (ENSG00000006453)	BRI3 (ENSG00000164713)	TECPR1 (ENSG00000205356)	BHLHA15 (ENSG00000180535)	LMTK2 (ENSG00000164715)	OCM2 (ENSG00000135175)	ASNS (ENSG00000070669) #18	TAC1 (ENSG00000006128) #19	SDHAF3 (ENSG00000196636) #20	DLX5 (ENSG00000105880) #22	DLX6 (ENSG00000006377) #23	SEM1 (ENSG00000127922) #24	SLC25A13 (ENSG00000004864) #25	DYNC1I1 (ENSG00000158560) #26	PDK4 (ENSG00000004799) #27	ASB4 (ENSG00000005981) #28	PON2 (ENSG00000105854) #29	PON3 (ENSG00000105852) #30	PON1 (ENSG00000005421) #31	PPP1R9A (ENSG00000158528) #33	PEG10 (ENSG00000242265) #35	SGCE (ENSG00000127990) #36	CASD1 (ENSG00000127995) #37	COL1A2 (ENSG00000164692)	BET1 (ENSG00000105829)
Gorilla	MODERN SPECIES	20	KPNA7 (ENSGGOG00000000414)	SMURF1 (ENSGGOG00000011481)	TRRAP (ENSGGOG00000002928)	TMEM130 (ENSGGOG00000016665)	NPTX2 (ENSGGOG00000014713)	ENSGGOG00000023648	BAIAP2L1 (ENSGGOG00000022920)	ENSGGOG00000009646	TECPR1 (ENSGGOG00000003065)	LMTK2 (ENSGGOG00000003052)	OCM2 (ENSGGOG00000022595)	ENSGGOG00000038206	ASNS (ENSGGOG00000005662) #18	TAC1 (ENSGGOG00000014091) #19	ENSGGOG00000014829	DLX5 (ENSGGOG00000004399) #22	DLX6 (ENSGGOG00000004398) #23	ENSGGOG00000043164	ENSGGOG00000023289	ENSGGOG00000000042	SLC25A13 (ENSGGOG00000005803) #25	DYNC1I1 (ENSGGOG00000000228) #26	PDK4 (ENSGGOG00000002467) #27	ASB4 (ENSGGOG00000006509) #28	ENSGGOG00000022016 #29	ENSGGOG00000025353 #29	PON3 (ENSGGOG00000013258) #30	PON1 (ENSGGOG00000004746) #31	PPP1R9A (ENSGGOG00000040320) #33	ENSGGOG00000028270	PEG10 (ENSGGOG00000040792) #35
Orangutan	MODERN SPECIES	20	TMEM106B (ENSPPYG00000017777)	THSD7A (ENSPPYG00000017778)	PHF14 (ENSPPYG00000017779)	ENSPPYG00000030557	NXPH1 (ENSPPYG00000017782) #10	ICA1 (ENSPPYG00000017783) #11	GLCCI1 (ENSPPYG00000017784) #12	UMAD1 (ENSPPYG00000029638) #13	RPA3 (ENSPPYG00000030236) #14	MIOS (ENSPPYG00000017788) #15	COL28A1 (ENSPPYG00000017789) #16	C1GALT1 (ENSPPYG00000030593) #17	ASNS (ENSPPYG00000017790) #18	TAC1 (ENSPPYG00000017791) #19	SDHAF3 (ENSPPYG00000017792) #20	DLX5 (ENSPPYG00000017793) #22	DLX6 (ENSPPYG00000017794) #23	ENSPPYG00000017795	ENSPPYG00000017796	SLC25A13 (ENSPPYG00000017797) #25	DYNC1I1 (ENSPPYG00000017798) #26	PDK4 (ENSPPYG00000017799) #27	ASB4 (ENSPPYG00000017801) #28	PON2 (ENSPPYG00000017802) #29	PON3 (ENSPPYG00000017803) #30	PON1 (ENSPPYG00000017804) #31	PPP1R9A (ENSPPYG00000017805) #33	PEG10 (ENSPPYG00000029380) #35	SGCE (ENSPPYG00000017807) #36	CASD1 (ENSPPYG00000017808) #37	COL1A2 (ENSPPYG00000017809)
Gibbon	MODERN SPECIES	1	ENSNLEG00000033241	ENSNLEG00000032207	NXPH1 (ENSNLEG00000016182) #10	ICA1 (ENSNLEG00000016162) #11	ENSNLEG00000016158 #12	ENSNLEG00000035067	UMAD1 (ENSNLEG00000016155) #13	RPA3 (ENSNLEG00000033298) #14	MIOS (ENSNLEG00000016134) #15	COL28A1 (ENSNLEG00000016093) #16	C1GALT1 (ENSNLEG00000016087) #17	ENSNLEG00000033587	ASNS (ENSNLEG00000016044) #18	TAC1 (ENSNLEG00000016015) #19	SDHAF3 (ENSNLEG00000016014) #20	ENSNLEG00000016010 #22	DLX6 (ENSNLEG00000016008) #23	ENSNLEG00000032740	ENSNLEG00000016002	ENSNLEG00000015998	SLC25A13 (ENSNLEG00000015945) #25	DYNC1I1 (ENSNLEG00000015889) #26	PDK4 (ENSNLEG00000015859) #27	ASB4 (ENSNLEG00000015854) #28	PON2 (ENSNLEG00000015782) #29	PON3 (ENSNLEG00000015766) #30	PON1 (ENSNLEG00000015705) #31	PPP1R9A (ENSNLEG00000015622) #33	ENSNLEG00000030717	PEG10 (ENSNLEG00000015612) #35	SGCE (ENSNLEG00000015565) #36
Cercopithecidae	ANCESTRAL SPECIES	11	ENSGT00950000182901.a.a.b.b.a.b.a.a.a.b	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00940000155405.kb	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000.u #17	ENSGT00760000119441.b	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00910000147039	ENSGT00940000157683 #23	ENSGT00910000146930	ENSGT00940000163409	ENSGT00390000002695	ENSGT00910000148269	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35
Cercopithecinae	ANCESTRAL SPECIES	8	ENSGT00950000182901.a.a.b.b.a.b.a.a.a.b	ENSGT00940000154268.f.k.a	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00940000155405.kb	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000.u #17	ENSGT00760000119441.b	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00910000146930	ENSGT00940000163409	ENSGT00390000002695	ENSGT00910000148269	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35
Cercopithecinae_a	ANCESTRAL SPECIES	8	ENSGT00950000182901.a.a.b.b.a.b.a.a.a.b	ENSGT00940000154268.f.k.a	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00940000155405.kb	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000.u #17	ENSGT00760000119441.b	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00940000157683 #23	ENSGT00910000146930	ENSGT00940000163409	ENSGT00390000002695	ENSGT00910000148269	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36
Cercopithecinae_b	ANCESTRAL SPECIES	11	ENSGT00950000182901.a.a.b.b.a.b.a.a.a.b	ENSGT00940000154268.f.k.a	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00940000155405.kb	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000.u #17	ENSGT00760000119441.b	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00940000164236	ENSGT00940000159188 #22	ENSGT00940000157683 #23	ENSGT00910000146930	ENSGT00940000163409	ENSGT00390000002695	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37
Cercopithecinae_d	ANCESTRAL SPECIES	10	ENSGT00950000182901.a.a.b.b.a.b.a.a.a.b	ENSGT00940000154268.f.k.a	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00940000155405.kb	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000.u #17	ENSGT00760000119441.b	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00940000164236	ENSGT00940000159188 #22	ENSGT00940000157683 #23	ENSGT00910000146930	ENSGT00940000163409	ENSGT00390000002695	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37
Drill	MODERN SPECIES	472				ICA1 (ENSMLEG00000044079) #11	GLCCI1 (ENSMLEG00000040012) #12	UMAD1 (ENSMLEG00000042525) #13	RPA3 (ENSMLEG00000036302) #14	MIOS (ENSMLEG00000037819) #15	COL28A1 (ENSMLEG00000015407) #16	C1GALT1 (ENSMLEG00000044453) #17	ENSMLEG00000032398	ASNS (ENSMLEG00000028862) #18	TAC1 (ENSMLEG00000040054) #19	ENSMLEG00000017301	SDHAF3 (ENSMLEG00000037669) #20	DLX5 (ENSMLEG00000036746) #22	DLX6 (ENSMLEG00000025971) #23	ENSMLEG00000039568	ENSMLEG00000036598	ENSMLEG00000033727	SLC25A13 (ENSMLEG00000038932) #25	DYNC1I1 (ENSMLEG00000042478) #26	PDK4 (ENSMLEG00000037032) #27	ASB4 (ENSMLEG00000036931) #28	PON2 (ENSMLEG00000027200) #29	PON3 (ENSMLEG00000036159) #30	PON1 (ENSMLEG00000035189) #31	PPP1R9A (ENSMLEG00000043621) #33	PEG10 (ENSMLEG00000035418) #35	SGCE (ENSMLEG00000035862) #36	CASD1 (ENSMLEG00000041290) #37
Sooty mangabey	MODERN SPECIES	185	NXPH1 (ENSCATG00000037000) #10	ICA1 (ENSCATG00000043201) #11	GLCCI1 (ENSCATG00000044892) #12	ENSCATG00000030314	UMAD1 (ENSCATG00000033366) #13	RPA3 (ENSCATG00000028204) #14	MIOS (ENSCATG00000011011) #15	ENSCATG00000001666	COL28A1 (ENSCATG00000031059) #16	C1GALT1 (ENSCATG00000030704) #17	ENSCATG00000043335	ASNS (ENSCATG00000038317) #18	TAC1 (ENSCATG00000034795) #19	ENSCATG00000043998	ENSCATG00000032188	DLX5 (ENSCATG00000044853) #22	DLX6 (ENSCATG00000036157) #23	ENSCATG00000041545	ENSCATG00000014825	ENSCATG00000037610	SLC25A13 (ENSCATG00000029550) #25	DYNC1I1 (ENSCATG00000037835) #26	PDK4 (ENSCATG00000031905) #27	ASB4 (ENSCATG00000029891) #28	PON2 (ENSCATG00000030239) #29	PON3 (ENSCATG00000033359) #30	ENSCATG00000039956	PON1 (ENSCATG00000034334) #31	PPP1R9A (ENSCATG00000039595) #33	PEG10 (ENSCATG00000012637) #35	SGCE (ENSCATG00000003182) #36
Olive baboon	MODERN SPECIES	14	ENSPANG00000049328	NXPH1 (ENSPANG00000010257) #10	ICA1 (ENSPANG00000012997) #11	GLCCI1 (ENSPANG00000005680) #12	UMAD1 (ENSPANG00000004767) #13	ENSPANG00000044583	RPA3 (ENSPANG00000050012) #14	MIOS (ENSPANG00000022010) #15	COL28A1 (ENSPANG00000022688) #16	C1GALT1 (ENSPANG00000003401) #17	ENSPANG00000045543	ASNS (ENSPANG00000020860) #18	TAC1 (ENSPANG00000005012) #19	ENSPANG00000040154	ENSPANG00000006297	DLX5 (ENSPANG00000039520) #22	DLX6 (ENSPANG00000045531) #23	ENSPANG00000037595	ENSPANG00000006248	ENSPANG00000016025	ENSPANG00000048858	SLC25A13 (ENSPANG00000000583) #25	DYNC1I1 (ENSPANG00000012325) #26	PDK4 (ENSPANG00000005011) #27	ASB4 (ENSPANG00000017487) #28	PON2 (ENSPANG00000005678) #29	PON1 (ENSPANG00000008433) #31	PPP1R9A (ENSPANG00000005010) #33	PEG10 (ENSPANG00000023893) #35	SGCE (ENSPANG00000008432) #36	CASD1 (ENSPANG00000005677) #37
Macaca	ANCESTRAL SPECIES	3	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00940000155405.kb	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000.u #17	ENSGT00760000119441.b	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000008610.a.b.a.b	ENSGT00510000046985.h.b.a.b	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00940000157683 #23	ENSGT00910000146930	ENSGT00940000162732 #24	ENSGT00940000163409	ENSGT00390000002695	ENSGT00910000148269	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35
Macaca_a	ANCESTRAL SPECIES	7	ENSGT00950000182901.a.a.b.b.a.b.a.a.a.b	ENSGT00940000154268.f.k.a	ENSGT00940000153095.g.b.a.a.a.b.a.a.b	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000.u #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000008610.a.b.a.b	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00940000157683 #23	ENSGT00910000146930	ENSGT00940000162732 #24	ENSGT00940000163409	ENSGT00390000002695	ENSGT00910000148269	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35
Crab-eating macaque	MODERN SPECIES	13	NXPH1 (ENSMFAG00000032515) #10	ICA1 (ENSMFAG00000046093) #11	GLCCI1 (ENSMFAG00000038435) #12	UMAD1 (ENSMFAG00000052878) #13	ENSMFAG00000042056 #14	MIOS (ENSMFAG00000034560) #15	COL28A1 (ENSMFAG00000000186) #16	ENSMFAG00000053535	C1GALT1 (ENSMFAG00000031532) #17	ENSMFAG00000055818	ASNS (ENSMFAG00000041092) #18	TAC1 (ENSMFAG00000000287) #19	ENSMFAG00000057765	ENSMFAG00000046006	ENSMFAG00000030531 #20	DLX5 (ENSMFAG00000035900) #22	DLX6 (ENSMFAG00000048863) #23	ENSMFAG00000001022	ENSMFAG00000045122	SLC25A13 (ENSMFAG00000037896) #25	ENSMFAG00000007583	DYNC1I1 (ENSMFAG00000000094) #26	PDK4 (ENSMFAG00000035180) #27	ASB4 (ENSMFAG00000041748) #28	PON2 (ENSMFAG00000001162) #29	PON3 (ENSMFAG00000038783) #30	PON1 (ENSMFAG00000035691) #31	ENSMFAG00000055174	ENSMFAG00000062513	PPP1R9A (ENSMFAG00000034343) #33	PEG10 (ENSMFAG00000045560) #35
Rhesus	MODERN SPECIES	13	ENSMMUG00000063606	PHF14 (ENSMMUG00000020895)	NDUFA4 (ENSMMUG00000020894)	ENSMMUG00000053010	NXPH1 (ENSMMUG00000009711) #10	ICA1 (ENSMMUG00000005435) #11	GLCCI1 (ENSMMUG00000045449) #12	UMAD1 (ENSMMUG00000042110) #13	RPA3 (ENSMMUG00000000854) #14	MIOS (ENSMMUG00000000853) #15	COL28A1 (ENSMMUG00000040123) #16	C1GALT1 (ENSMMUG00000054913) #17	ASNS (ENSMMUG00000019157) #18	TAC1 (ENSMMUG00000014823) #19	SDHAF3 (ENSMMUG00000014920) #20	DLX5 (ENSMMUG00000054481) #22	DLX6 (ENSMMUG00000049169) #23	ENSMMUG00000055860	SEM1 (ENSMMUG00000004127) #24	ENSMMUG00000006974	SLC25A13 (ENSMMUG00000005250) #25	DYNC1I1 (ENSMMUG00000005915) #26	PDK4 (ENSMMUG00000021389) #27	ASB4 (ENSMMUG00000008016) #28	PON2 (ENSMMUG00000008014) #29	PON3 (ENSMMUG00000008013) #30	PON1 (ENSMMUG00000008011) #31	PPP1R9A (ENSMMUG00000008008) #33	ENSMMUG00000056378	ENSMMUG00000053116 ##35	ENSMMUG00000032524 #35
Pig-tailed macaque	MODERN SPECIES	534	ENSMNEG00000029668	NXPH1 (ENSMNEG00000039744) #10	ICA1 (ENSMNEG00000044278) #11	GLCCI1 (ENSMNEG00000040369) #12	ENSMNEG00000032658	UMAD1 (ENSMNEG00000044071) #13	RPA3 (ENSMNEG00000044584) #14	MIOS (ENSMNEG00000036023) #15	COL28A1 (ENSMNEG00000035662) #16	C1GALT1 (ENSMNEG00000029681) #17	ENSMNEG00000031471	ASNS (ENSMNEG00000043217) #18	TAC1 (ENSMNEG00000040665) #19	ENSMNEG00000030799	ENSMNEG00000031425	DLX5 (ENSMNEG00000021136) #22	DLX6 (ENSMNEG00000041272) #23	ENSMNEG00000029391	ENSMNEG00000045375	ENSMNEG00000045345	SLC25A13 (ENSMNEG00000031032) #25	DYNC1I1 (ENSMNEG00000040261) #26	PDK4 (ENSMNEG00000042419) #27	ASB4 (ENSMNEG00000034621) #28	PON2 (ENSMNEG00000037066) #29	PON1 (ENSMNEG00000041009) #31	PPP1R9A (ENSMNEG00000036491) #33	PEG10 (ENSMNEG00000037924) #35	SGCE (ENSMNEG00000044499) #36	CASD1 (ENSMNEG00000043682) #37	COL1A2 (ENSMNEG00000032242)
Vervet Monkey	MODERN SPECIES	13	THSD7A (ENSCSAG00000013288)	PHF14 (ENSCSAG00000013274)	ENSCSAG00000019118	NDUFA4 (ENSCSAG00000013267)	NXPH1 (ENSCSAG00000019119) #10	ICA1 (ENSCSAG00000013228) #11	GLCCI1 (ENSCSAG00000013152) #12	UMAD1 (ENSCSAG00000013129) #13	RPA3 (ENSCSAG00000013124) #14	MIOS (ENSCSAG00000013106) #15	COL28A1 (ENSCSAG00000013070) #16	C1GALT1 (ENSCSAG00000013042) #17	ASNS (ENSCSAG00000013037) #18	TAC1 (ENSCSAG00000013031) #19	ENSCSAG00000013025	DLX5 (ENSCSAG00000013019) #22	DLX6 (ENSCSAG00000013014) #23	SEM1 (ENSCSAG00000013008) #24	ENSCSAG00000013000	SLC25A13 (ENSCSAG00000012995) #25	DYNC1I1 (ENSCSAG00000012984) #26	PDK4 (ENSCSAG00000012972) #27	ASB4 (ENSCSAG00000012965) #28	PON2 (ENSCSAG00000012956) #29	PON3 (ENSCSAG00000012950) #30	PON1 (ENSCSAG00000012943) #31	PPP1R9A (ENSCSAG00000012919) #33	ENSCSAG00000019120 #35	SGCE (ENSCSAG00000012803) #36	CASD1 (ENSCSAG00000012791) #37	COL1A2 (ENSCSAG00000012769)
Rhinopithecus	ANCESTRAL SPECIES	336				ENSGT00910000146851.a.a	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000.u #17	ENSGT00760000119441.b	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00940000164236	ENSGT00940000159188 #22	ENSGT00910000147039	ENSGT00940000157683 #23	ENSGT00910000146930
Black snub-nosed monkey	MODERN SPECIES	1452													ASNS (ENSRBIG00000034312) #18	TAC1 (ENSRBIG00000040521) #19	ENSRBIG00000039526	DLX5 (ENSRBIG00000009903) #22	ENSRBIG00000014036	DLX6 (ENSRBIG00000000080) #23	ENSRBIG00000041095	ENSRBIG00000040487	ENSRBIG00000001757	ENSRBIG00000036051	SLC25A13 (ENSRBIG00000031676) #25	DYNC1I1 (ENSRBIG00000039059) #26	PDK4 (ENSRBIG00000041524) #27	ASB4 (ENSRBIG00000042053) #28	PON2 (ENSRBIG00000033009) #29	PON3 (ENSRBIG00000042185) #30	PON1 (ENSRBIG00000036471) #31	ENSRBIG00000042535	PPP1R9A (ENSRBIG00000030177) #33
Golden snub-nosed monkey	MODERN SPECIES	1072															ENSRROG00000030088	DLX5 (ENSRROG00000032350) #22	DLX6 (ENSRROG00000034322) #23	ENSRROG00000021655
Platyrrhini	ANCESTRAL SPECIES	10	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f.i.a.a	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00910000147039	ENSGT00940000157683 #23	ENSGT00910000146930	ENSGT00940000163409	ENSGT00390000002695	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36
Cebidae	ANCESTRAL SPECIES	9	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f.i.a.a	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029 #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00910000147039	ENSGT00940000157683 #23	ENSGT00910000146930	ENSGT00940000163409	ENSGT00390000002695	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36
Marmoset	MODERN SPECIES	20	ENSCJAG00000070029	ENSCJAG00000086236	ICA1 (ENSCJAG00000000720) #11	GLCCI1 (ENSCJAG00000047899) #12	UMAD1 (ENSCJAG00000087186) #13	ENSCJAG00000083800	RPA3 (ENSCJAG00000085113) #14	MIOS (ENSCJAG00000000686) #15	COL28A1 (ENSCJAG00000000636) #16	C1GALT1 (ENSCJAG00000057327) #17	ENSCJAG00000082426	ASNS (ENSCJAG00000000618) #18	ENSCJAG00000068961 #19	ENSCJAG00000085680	SDHAF3 (ENSCJAG00000042876) #20	DLX5 (ENSCJAG00000000589) #22	DLX6 (ENSCJAG00000085344) #23	ENSCJAG00000076106	ENSCJAG00000075240	ENSCJAG00000080818	ENSCJAG00000043666	ENSCJAG00000076866	ENSCJAG00000042685	SLC25A13 (ENSCJAG00000000554) #25	DYNC1I1 (ENSCJAG00000000528) #26	ENSCJAG00000084017	PDK4 (ENSCJAG00000047805) #27	ASB4 (ENSCJAG00000013280) #28	PON2 (ENSCJAG00000013295) #29	PON3 (ENSCJAG00000045831) #30	PPP1R9A (ENSCJAG00000013400) #33
Cebidae_a	ANCESTRAL SPECIES	7	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f.i.a.a.a	ENSGT00950000182883.a.b.a #10	ENSGT00390000005530.a.b #11	ENSGT00950000183046.b #12	ENSGT00390000003051 #13	ENSGT00390000008029.w #14	ENSGT00390000015038 #15	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00940000155984.b	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00910000147039	ENSGT00940000157683 #23	ENSGT00910000146930	ENSGT00940000163409	ENSGT00390000002695	ENSGT00940000159344 #25	ENSGT00940000156032 #26	ENSGT01030000234646.B.a.a.a.b #27	ENSGT00940000158874 #28	ENSGT00390000008932.c.a.a #29	ENSGT00390000008932.c.b #30	ENSGT00390000008932.c.a.b #31	ENSGT00940000155538 #33	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36
Bolivian squirrel monkey	MODERN SPECIES	44	ENSSBOG00000015022	NXPH1 (ENSSBOG00000033774) #10	ICA1 (ENSSBOG00000031664) #11	GLCCI1 (ENSSBOG00000032440) #12	UMAD1 (ENSSBOG00000029436) #13	RPA3 (ENSSBOG00000019538) #14	ENSSBOG00000027188	MIOS (ENSSBOG00000017338) #15	COL28A1 (ENSSBOG00000035682) #16	ENSSBOG00000032452	C1GALT1 (ENSSBOG00000026512) #17	ENSSBOG00000019705	ASNS (ENSSBOG00000031816) #18	TAC1 (ENSSBOG00000031415) #19	SDHAF3 (ENSSBOG00000031188) #20	DLX5 (ENSSBOG00000032115) #22	ENSSBOG00000026742	DLX6 (ENSSBOG00000020606) #23	ENSSBOG00000033289	ENSSBOG00000034946	ENSSBOG00000031330	ENSSBOG00000035070	SLC25A13 (ENSSBOG00000035203) #25	DYNC1I1 (ENSSBOG00000033850) #26	ENSSBOG00000032883	PDK4 (ENSSBOG00000029811) #27	ASB4 (ENSSBOG00000022820) #28	PON2 (ENSSBOG00000029443) #29	PON3 (ENSSBOG00000011528) #30	PON1 (ENSSBOG00000035653) #31	PPP1R9A (ENSSBOG00000022677) #33
Capuchin	MODERN SPECIES	37	ENSCCAG00000007645	NXPH1 (ENSCCAG00000001523) #10	ICA1 (ENSCCAG00000024119) #11	GLCCI1 (ENSCCAG00000021860) #12	UMAD1 (ENSCCAG00000028681) #13	ENSCCAG00000025095 #14	ENSCCAG00000021943	MIOS (ENSCCAG00000033208) #15	COL28A1 (ENSCCAG00000034062) #16	C1GALT1 (ENSCCAG00000037539) #17	ENSCCAG00000008594	ENSCCAG00000032950 #18	TAC1 (ENSCCAG00000022732) #19	SDHAF3 (ENSCCAG00000029465) #20	ENSCCAG00000019570	DLX5 (ENSCCAG00000018356) #22	ENSCCAG00000007505	DLX6 (ENSCCAG00000022645) #23	ENSCCAG00000032220	ENSCCAG00000030816	ENSCCAG00000033792 #25	DYNC1I1 (ENSCCAG00000027487) #26	PDK4 (ENSCCAG00000030349) #27	ASB4 (ENSCCAG00000029647) #28	PON2 (ENSCCAG00000032651) #29	PON3 (ENSCCAG00000027557) #30	PON1 (ENSCCAG00000037019) #31	PPP1R9A (ENSCCAG00000029366) #33	PEG10 (ENSCCAG00000022728) #35	SGCE (ENSCCAG00000034233) #36	ENSCCAG00000026906
Mas night monkey	MODERN SPECIES	776	THSD7A (ENSANAG00000022340)	PHF14 (ENSANAG00000037061)	ENSANAG00000038257	NXPH1 (ENSANAG00000021516) #10	ICA1 (ENSANAG00000037411) #11	GLCCI1 (ENSANAG00000022639) #12	UMAD1 (ENSANAG00000035021) #13	RPA3 (ENSANAG00000021050) #14	MIOS (ENSANAG00000031901) #15	ENSANAG00000037952	COL28A1 (ENSANAG00000031546) #16	C1GALT1 (ENSANAG00000024885) #17	ENSANAG00000030964 #18	TAC1 (ENSANAG00000020783) #19	SDHAF3 (ENSANAG00000037083) #20	DLX5 (ENSANAG00000024128) #22	ENSANAG00000021116	DLX6 (ENSANAG00000003767) #23	ENSANAG00000025118	ENSANAG00000033458	ENSANAG00000036040	SLC25A13 (ENSANAG00000035481) #25	DYNC1I1 (ENSANAG00000027689) #26	PDK4 (ENSANAG00000033937) #27	ASB4 (ENSANAG00000023999) #28	PON2 (ENSANAG00000031707) #29	PON3 (ENSANAG00000023332) #30	PON1 (ENSANAG00000032641) #31	PPP1R9A (ENSANAG00000005419) #33	PEG10 (ENSANAG00000021637) #35	SGCE (ENSANAG00000021843) #36