Hystricomorpha	ANCESTRAL SPECIES	14	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a	ENSGT00390000005530.a.b #8	ENSGT00950000183046.b.l #9	ENSGT00390000003051 #12	ENSGT00390000008029 #13	ENSGT00390000015038 #14	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #28	ENSGT01030000234646.B.a.a.a.b #29	ENSGT00940000158874 #30	ENSGT00390000008932.c.a.a #31	ENSGT00390000008932.c.b #32	ENSGT00390000008932.c.a.b #33	ENSGT00940000155538 #34	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639	ENSGT00940000162637
Naked mole-rat female	MODERN SPECIES	5	ENSHGLG00000038096 #7	ICA1 (ENSHGLG00000003048) #8	GLCCI1 (ENSHGLG00000002931) #9	ENSHGLG00000002785 #10	ENSHGLG00000034935 #11	ENSHGLG00000037539 #12	ENSHGLG00000039732 #13	MIOS (ENSHGLG00000001710) #14	ENSHGLG00000001680 #15	ENSHGLG00000001565 #16	ENSHGLG00000001496 #17	ENSHGLG00000001445 #18	TAC1 (ENSHGLG00000001397) #19	ACN9 (ENSHGLG00000001283) #20	ENSHGLG00000003962 #21	DLX5 (ENSHGLG00000035624) #22	DLX6 (ENSHGLG00000036463) #23	SEM1 (ENSHGLG00000001228) #24	SLC25A13 (ENSHGLG00000001078) #25	ENSHGLG00000008153 #26	ENSHGLG00000000847 #27	DYNC1I1 (ENSHGLG00000000924) #28	PDK4 (ENSHGLG00000044007) #29	ASB4 (ENSHGLG00000000818) #30	PON2 (ENSHGLG00000044448) #31	PON3 (ENSHGLG00000003028) #32	PON1 (ENSHGLG00000048207) #33	PPP1R9A (ENSHGLG00000002745) #34	Peg10 (ENSHGLG00000039925) #35	SGCE (ENSHGLG00000002437) #36	CASD1 (ENSHGLG00000002281) #37
Hystricomorpha_a	ANCESTRAL SPECIES	43	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a	ENSGT00390000005530.a.b #8	ENSGT00950000183046.b.l #9	ENSGT00390000003051 #12	ENSGT00390000008029 #13	ENSGT00390000015038 #14	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #28	ENSGT01030000234646.B.a.a.a.b #29	ENSGT00940000158874 #30	ENSGT00390000008932.c.a.a #31	ENSGT00390000008932.c.b #32	ENSGT00390000008932.c.a.b #33	ENSGT00940000155538 #34	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639	ENSGT00940000162637
Guinea pig	MODERN SPECIES	11	THSD7A (ENSCPOG00000000279)	ENSCPOG00000040423	PHF14 (ENSCPOG00000002218)	NDUFA4 (ENSCPOG00000036788)	NXPH1 (ENSCPOG00000006994)	ICA1 (ENSCPOG00000021862) #8	GLCCI1 (ENSCPOG00000037962) #9	UMAD1 (ENSCPOG00000030933) #12	RPA3 (ENSCPOG00000036936) #13	MIOS (ENSCPOG00000011743) #14	COL28A1 (ENSCPOG00000021196) #16	ENSCPOG00000033504 #17	ENSCPOG00000009841 #18	TAC1 (ENSCPOG00000011245) #19	SDHAF3 (ENSCPOG00000014057) #20	DLX5 (ENSCPOG00000001796) #22	DLX6 (ENSCPOG00000001795) #23	SEM1 (ENSCPOG00000035520) #24	SLC25A13 (ENSCPOG00000013200) #25	ENSCPOG00000011054 #28	ENSCPOG00000037546 #28	PDK4 (ENSCPOG00000033399) #29	ASB4 (ENSCPOG00000014245) #30	PON2 (ENSCPOG00000007257) #31	PON3 (ENSCPOG00000039258) #32	PON1 (ENSCPOG00000037806) #33	ENSCPOG00000010259	PPP1R9A (ENSCPOG00000011567) #34	ENSCPOG00000037165 ##35	SGCE (ENSCPOG00000010672) #36	CASD1 (ENSCPOG00000033243) #37
Hystricomorpha_b	ANCESTRAL SPECIES	62	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a	ENSGT00390000005530.a.b #8	ENSGT00950000183046.b.l #9	ENSGT00390000003051 #12	ENSGT00390000008029 #13	ENSGT00390000015038 #14	ENSGT00940000161647 #16	ENSGT00940000155000 #17	ENSGT00390000001994 #18	ENSGT00390000002457 #19	ENSGT00390000010029 #20	ENSGT00940000159188 #22	ENSGT00940000157683 #23	ENSGT00940000162732 #24	ENSGT00940000159344 #25	ENSGT00940000156032 #28	ENSGT01030000234646.B.a.a.a.b #29	ENSGT00940000158874 #30	ENSGT00390000008932.c.a.a #31	ENSGT00390000008932.c.b #32	ENSGT00390000008932.c.a.b #33	ENSGT00940000155538 #34	ENSGT00950000183173.P #35	ENSGT00390000005672.a.b #36	ENSGT00390000004037 #37	ENSGT00940000155639	ENSGT00940000162637
Long-tailed chinchilla	MODERN SPECIES	139	THSD7A (ENSCLAG00000003554)	PHF14 (ENSCLAG00000004153)	NDUFA4 (ENSCLAG00000004050)	NXPH1 (ENSCLAG00000003986)	ICA1 (ENSCLAG00000003729) #8	GLCCI1 (ENSCLAG00000003639) #9	UMAD1 (ENSCLAG00000003569) #12	RPA3 (ENSCLAG00000003500) #13	MIOS (ENSCLAG00000003461) #14	COL28A1 (ENSCLAG00000003344) #16	C1GALT1 (ENSCLAG00000003286) #17	ENSCLAG00000003237 #18	ENSCLAG00000003157 #18	TAC1 (ENSCLAG00000003086) #19	SDHAF3 (ENSCLAG00000003011) #20	DLX5 (ENSCLAG00000002987) #22	DLX6 (ENSCLAG00000002971) #23	SEM1 (ENSCLAG00000002949) #24	SLC25A13 (ENSCLAG00000002917) #25	DYNC1I1 (ENSCLAG00000006396) #28	PDK4 (ENSCLAG00000017289) #29	ASB4 (ENSCLAG00000009834) #30	PON2 (ENSCLAG00000009728) #31	PON3 (ENSCLAG00000009609) #32	PON1 (ENSCLAG00000009506) #33	PPP1R9A (ENSCLAG00000008731) #34	Peg10 (ENSCLAG00000017695) #35	SGCE (ENSCLAG00000007837) #36	CASD1 (ENSCLAG00000007565) #37	COL1A2 (ENSCLAG00000009286)	BET1 (ENSCLAG00000008520)
Degu	MODERN SPECIES	91															SDHAF3 (ENSODEG00000009620) #20	DLX5 (ENSODEG00000010609) #22	DLX6 (ENSODEG00000010072) #23	ENSODEG00000010570 #24	SLC25A13 (ENSODEG00000011496) #25	DYNC1I1 (ENSODEG00000010855) #28	PDK4 (ENSODEG00000010586) #29	ASB4 (ENSODEG00000010657) #30	PON2 (ENSODEG00000010755) #31	PON3 (ENSODEG00000011235) #32	PON1 (ENSODEG00000009868) #33	PPP1R9A (ENSODEG00000010739) #34	PEG10 (ENSODEG00000009969) #35	ENSODEG00000009551 #36	CASD1 (ENSODEG00000010520) #37	COL1A2 (ENSODEG00000010146)	ENSODEG00000010232