Actinopterygii	ANCESTRAL SPECIES	33	ENSGT00940000157134	ENSGT00950000183045.A.a.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000155080	ENSGT00940000165329	ENSGT00940000160615.b.b.a	ENSGT00940000160615.a.b	ENSGT00940000163741	ENSGT00940000162809	ENSGT00940000155081.D	ENSGT00390000002581	ENSGT00940000158276	ENSGT00940000157935	ENSGT00940000157565	ENSGT00390000006243 #22	ENSGT00390000009155	ENSGT00940000155884 #23	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134	ENSGT00940000155933.b.b	ENSGT00940000171583	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B	ENSGT00940000160370	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Neopterygii	ANCESTRAL SPECIES	3	ENSGT00950000183045.A.a.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000155080	ENSGT00940000165329	ENSGT00940000160615.b.b.a	ENSGT00940000160615.a.b	ENSGT00940000163741	ENSGT00940000162809	ENSGT00950000183136.b.a.a	ENSGT00940000155081.D	ENSGT00390000002581	ENSGT00940000158276	ENSGT00940000157935	ENSGT00940000157565	ENSGT00390000006243 #22	ENSGT00390000009155	ENSGT00940000155884 #23	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134	ENSGT00940000155933.b.b	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B	ENSGT00940000166291	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b	ENSGT00940000153431.b
Osteoglossocephalai	ANCESTRAL SPECIES	92	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000158034	ENSGT00940000154418.a.a #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00950000183109.c.a.a.a.a ##15	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00390000006243 #22	ENSGT00390000005029	ENSGT00940000159518.a ##19	ENSGT00940000164095.a ##20	ENSGT00940000164095.b #20	ENSGT00940000164611 #21	ENSGT00940000158698	ENSGT00390000009155	ENSGT00940000155884.a ##23	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E
Osteoglossiformes	ANCESTRAL SPECIES	94	ENSGT00940000153342.a #10	ENSGT00940000158034	ENSGT00940000154418.a.a.c #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611 #21	ENSGT00940000158698.l.b	ENSGT00390000006243 #22	ENSGT00940000155884.a.a ##23	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT00940000155933.b.a	ENSGT01050000244827.E.e.a	ENSGT00950000183029.B.i.b	ENSGT00940000166291.h	ENSGT00940000154866.B.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000153431.b	ENSGT00390000006916.c	ENSGT00910000147025	ENSGT00940000156983.a.a.j	ENSGT00940000156467.o	ENSGT00940000158732.k
Asian bonytongue	MODERN SPECIES	7	taf5 (ENSSFOG00015003852) #10	pcgf6 (ENSSFOG00015003847)	inab (ENSSFOG00015003824) #11	nt5c2b (ENSSFOG00015003738) #12	CNNM2 (ENSSFOG00015003692) #13	as3mt (ENSSFOG00015003668) #14	borcs7 (ENSSFOG00015003655)	cyp17a1 (ENSSFOG00015003625)	wbp1lb (ENSSFOG00015003615) #15	poll (ENSSFOG00015003586) #17	dpcd (ENSSFOG00015003562) #18	fgf8b (ENSSFOG00015032385) #19	slc2a15b (ENSSFOG00015003512) #20	lbx1b (ENSSFOG00015003483) #21	tlx1 (ENSSFOG00015030414)	cenpk (ENSSFOG00015003362) #22	smap1 (ENSSFOG00015003315) ##23	b3gat2 (ENSSFOG00015003295)	RIMS1 (ENSSFOG00015003186)	KCNQ5 (ENSSFOG00015031464)	CGAS (ENSSFOG00015003054)	eef1a1a (ENSSFOG00015003033)	ENSSFOG00015002983	RIN2 (ENSSFOG00015002933)	ENSSFOG00015002919	ENSSFOG00015002819	dtd1 (ENSSFOG00015002797)	sec23b (ENSSFOG00015002716)	ccdc85al (ENSSFOG00015028476)	ENSSFOG00015002560	bcl11aa (ENSSFOG00015031714)
P. kingsleyae	MODERN SPECIES	116	atp5md (ENSPKIG00000001009) #9	pcgf6 (ENSPKIG00000001037)	inab (ENSPKIG00000001077) #11	nt5c2b (ENSPKIG00000001096) #12	CNNM2 (ENSPKIG00000001150) #13	as3mt (ENSPKIG00000001196) #14	borcs7 (ENSPKIG00000001240)	cyp17a1 (ENSPKIG00000001260)	wbp1lb (ENSPKIG00000001289) #15	poll (ENSPKIG00000001318) #17	dpcd (ENSPKIG00000001362) #18	fgf8b (ENSPKIG00000001399) #19	slc2a15b (ENSPKIG00000001451) #20	ENSPKIG00000001513 #21	TLX1 (ENSPKIG00000001529)	cenpk (ENSPKIG00000001546) #22	smap1 (ENSPKIG00000001603) ##23	B3GAT2 (ENSPKIG00000001664)
Clupeocephala	ANCESTRAL SPECIES	209	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00940000164611.b ##21	ENSGT00390000006243 #22	ENSGT00940000154866.B.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000153431.b	ENSGT00390000006916.c
Euteleosteomorpha	ANCESTRAL SPECIES	95	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00940000164611.b ##21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155933.b.b	ENSGT00940000154866.B.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000153431.b	ENSGT00860000134050	ENSGT00980000198902	ENSGT00940000156184.a	ENSGT00390000000909	ENSGT00940000157732.f.a	ENSGT00940000156696.B	ENSGT00530000063534.b	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT00990000206076
Protacanthopterygii	ANCESTRAL SPECIES	142	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.b ##21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT00950000183029.B.j.e.b	ENSGT01100000263476.B.b.a.b	ENSGT00940000154866.B.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000153431.b	ENSGT00980000198902	ENSGT00940000156184.a	ENSGT00390000000909	ENSGT00940000157732.f.a.e	ENSGT00940000156696.B	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT01030000234563.b.a.b.a.a.c.a
Salmoninae	ANCESTRAL SPECIES	64	ENSGT00940000153342.a.e.a.b #10	ENSGT00940000166377.g #9	ENSGT00940000153342.a.f #10	ENSGT00940000154418.a.a.b.c.b #11	ENSGT00940000163289.b.a.a.f #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b.b #15	ENSGT00940000158515.l #17	ENSGT00950000183109.c.a.a.a.b.a.a #15	ENSGT00940000158515.k.a #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b.a #20	ENSGT00940000164611.b ##21	ENSGT00390000006243 #22	ENSGT00940000155884.b.d #23	ENSGT00940000155134.z.f.a.b	ENSGT00940000155933.b.b	ENSGT00950000183029.B.j.e.b	ENSGT01100000263476.B.b.a.b	ENSGT00940000154866.B.b.f	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000153431.b.r.a	ENSGT00940000156184.a.i	ENSGT00390000000909.f	ENSGT00940000157732.f.a.e.b	ENSGT00940000156696.B.g
Huchen	DUPLICATION
Huchen	MODERN SPECIES	484					ENSHHUG00000045998 #10	inab (ENSHHUG00000046004) #11	nt5c2b (ENSHHUG00000046006) #12	CNNM2 (ENSHHUG00000046045) #13	as3mt (ENSHHUG00000046047) #14	wbp1lb (ENSHHUG00000046059) #15	poll (ENSHHUG00000046062) #17	dpcd (ENSHHUG00000046070) #18	fgf8b (ENSHHUG00000046083) #19	slc2a15b (ENSHHUG00000046232) #20	lbx1b (ENSHHUG00000046240) ##21	cenpk (ENSHHUG00000046254) #22	ENSHHUG00000046257 #23	RIMS1 (ENSHHUG00000046260)	ENSHHUG00000046299	ENSHHUG00000046303	ENSHHUG00000046369	ENSHHUG00000046549	ENSHHUG00000046557	ENSHHUG00000046562	ENSHHUG00000046569	ENSHHUG00000046577	RIN2 (ENSHHUG00000046592)	SLC24A3 (ENSHHUG00000046627)
Huchen	MODERN SPECIES	408														slc2a15b (ENSHHUG00000010687) #20	lbx1b (ENSHHUG00000010702) ##21	ENSHHUG00000010723 #22	SMAP1 (ENSHHUG00000010747) #23	RIMS1 (ENSHHUG00000010786)	ENSHHUG00000011643	ENSHHUG00000011658	ENSHHUG00000011664	ENSHHUG00000011668	ENSHHUG00000011672	ENSHHUG00000011673	ENSHHUG00000011675	RIN2 (ENSHHUG00000011679)	SLC24A3 (ENSHHUG00000011862)	dtd1 (ENSHHUG00000011896)	ENSHHUG00000011912	ENSHHUG00000011924
Salmoninae_a	ANCESTRAL SPECIES	33	ENSGT00390000012228 #8	ENSGT00940000166377.h #9	ENSGT00940000153342.a.e.a.b #10	ENSGT00940000166377.g #9	ENSGT00940000153342.a.f #10	ENSGT00940000154418.a.a.b.c.b #11	ENSGT00940000163289.b.a.a.e #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b.b #15	ENSGT00940000158515.k.a #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b.a #20	ENSGT00940000164611.b ##21	ENSGT00390000006243 #22	ENSGT00940000155884.b.d #23	ENSGT00940000155134.z.f.a.b	ENSGT00940000155933.b.b.e.b	ENSGT00950000183029.B.j.e.b	ENSGT00940000162741.b	ENSGT00940000155933.b.b.e.a	ENSGT01100000263476.A.b.a.b.a	ENSGT00940000154866.B.b.f	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000153431.b.r.a	ENSGT00940000156184.a.i	ENSGT00390000000909.f	ENSGT00940000157732.f.a.e.b	ENSGT00940000156696.B.g	ENSGT01030000234563.b.a.b.a.b.a.c.a.a
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	37	ENSGT01030000234610.b.a.b.a.j	ENSGT00940000166025.a #7	ENSGT00390000012228.l #8	ENSGT00940000166377.h #9	ENSGT00940000153342.a.f #10	ENSGT00940000153342.a.e.a.b #10	ENSGT00940000154418.a.a.b.c.b #11	ENSGT00940000163289.b.a.a.e #12	ENSGT00940000159034.t #13	ENSGT00950000183109.c.a.a.a.b.a.a #15	ENSGT00940000158515.k.a #17	ENSGT00390000014031.l #18	ENSGT00940000159518.b.f #19	ENSGT00940000164095.b.a.a #20	ENSGT00940000164611.b.a ##21	ENSGT00390000006243.k #22	ENSGT00940000155884.b.d.b #23	ENSGT00940000155134.z.e.a	ENSGT00940000155933.b.b.e.a	ENSGT00950000183029.B.j.e.b.b	ENSGT01100000263476.A.b.a.b.a	ENSGT00940000154866.B.b.f	ENSGT01030000234532.A.a.a.b.j.b.e	ENSGT00940000156184.a.i	ENSGT00390000000909.f	ENSGT00940000157732.f.a.e.a	ENSGT00940000156696.B.h.a	ENSGT01030000234563.b.a.b.a.b.a.c.a.b	ENSGT01030000234563.b.a.b.a.a.c.a.l	ENSGT00990000206076.c	ENSGT00390000000483.a.b.a.b
Atlantic salmon	MODERN SPECIES	3	pdcd11 (ENSSSAG00000004225) #8	usmg5 (ENSSSAG00000004194) #9	taf5 (ENSSSAG00000004352) #10	ENSSSAG00000095552	nt5c2b (ENSSSAG00000000687) #12	inab (ENSSSAG00000104505) #11	ENSSSAG00000008311 #13	as3mt (ENSSSAG00000008326) #14	wbp1lb (ENSSSAG00000113488) #15	poll (ENSSSAG00000000450) #17	dpcd (ENSSSAG00000008388) #18	fgf8b (ENSSSAG00000008393) #19	ENSSSAG00000073607 #20	ENSSSAG00000094147	lbx1b (ENSSSAG00000092954) ##21	cenpk (ENSSSAG00000078834) #22	ENSSSAG00000000305 ##23	ENSSSAG00000000250	ENSSSAG00000005004	ENSSSAG00000006679	ENSSSAG00000006735	ENSSSAG00000077361	ENSSSAG00000116362	ENSSSAG00000006755	ENSSSAG00000116802	ENSSSAG00000006769	ENSSSAG00000108873	SLK (ENSSSAG00000006874)	stn1 (ENSSSAG00000088408)	SH3PXD2A (ENSSSAG00000009727)	ENSSSAG00000107127
River trout	MODERN SPECIES	5	ITPRIP (ENSSTUG00000032233)	CALHM1 (ENSSTUG00000032228)	zgc:175214 (ENSSTUG00000032184) #7	pdcd11 (ENSSTUG00000031605) #8	atp5md (ENSSTUG00000031569) #9	taf5 (ENSSTUG00000031238) #10	inab (ENSSTUG00000031227) #11	nt5c2b (ENSSTUG00000030969) #12	CNNM2 (ENSSTUG00000030920) #13	wbp1lb (ENSSTUG00000030911) #15	poll (ENSSTUG00000030901) #17	dpcd (ENSSTUG00000030884) #18	fgf8b (ENSSTUG00000030879) #19	ENSSTUG00000030833 #20	lbx1b (ENSSTUG00000030824) ##21	cenpk (ENSSTUG00000030796) #22	ENSSTUG00000030783 #23	RIMS1 (ENSSTUG00000026976)	ENSSTUG00000026821	ENSSTUG00000026751	ENSSTUG00000026742	ENSSTUG00000026730	RIN2 (ENSSTUG00000026715)	SLC24A3 (ENSSTUG00000026705)	dtd1 (ENSSTUG00000026692)	ENSSTUG00000026668	ENSSTUG00000026640	slkb (ENSSTUG00000025673)	stn1 (ENSSTUG00000025633)	SH3PXD2A (ENSSTUG00000025515)	neurl1aa (ENSSTUG00000025500)
Salmo	ANCESTRAL SPECIES	95			ENSGT00390000012228.k #8	ENSGT00940000166377.g #9	ENSGT00940000153342.a.e.a.a #10	ENSGT00940000154418.a.a.b.c.a #11	ENSGT00940000163289.b.a.a.f #12	ENSGT00940000159034.s #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b.a.b #15	ENSGT00940000158515.k.b #17	ENSGT00390000014031.k #18	ENSGT00940000159518.b.e #19	ENSGT00940000164095.b.a.b #20	ENSGT00940000164611.b.b ##21	ENSGT00390000006243.l #22	ENSGT00940000155884.b.d.a #23	ENSGT00940000155134.z.f.b	ENSGT00940000155933.b.b.e.b	ENSGT00950000183029.B.j.e.b.a	ENSGT01100000263476.A.b.a.a	ENSGT00940000154866.B.b.e	ENSGT01030000234532.A.a.a.b.j.b.f	ENSGT00940000153431.b.r.a	ENSGT00980000198902	ENSGT00940000168136	ENSGT00940000156184.a.j	ENSGT00390000000909.e	ENSGT00940000157732.f.a.e.b	ENSGT00940000156696.B.g	ENSGT01030000234563.b.a.b.a.b.a.c.a.a
River trout	MODERN SPECIES	31	atp5md (ENSSTUG00000048617) #9	taf5 (ENSSTUG00000048640) #10	atp5md (ENSSTUG00000048822) #9	taf5 (ENSSTUG00000048826) #10	inab (ENSSTUG00000048835) #11	ENSSTUG00000048836	nt5c2b (ENSSTUG00000048853) #12	CNNM2 (ENSSTUG00000048902) #13	as3mt (ENSSTUG00000048917) #14	wbp1lb (ENSSTUG00000049033) #15	poll (ENSSTUG00000049036) #17	dpcd (ENSSTUG00000049043) #18	fgf8b (ENSSTUG00000049053) #19	ENSSTUG00000049091 #20	lbx1b (ENSSTUG00000049180) ##21	cenpk (ENSSTUG00000049185) #22	ENSSTUG00000049196 #23	RIMS1 (ENSSTUG00000049254)	ENSSTUG00000049586	ENSSTUG00000049762	ENSSTUG00000049772	ENSSTUG00000049775	ENSSTUG00000049780	SLC24A3 (ENSSTUG00000049787)	dtd1 (ENSSTUG00000049789)	SLK (ENSSTUG00000038768)	stn1 (ENSSTUG00000039267)	SH3PXD2A (ENSSTUG00000039294)	neurl1aa (ENSSTUG00000039309)	ENSSTUG00000039369	ENSSTUG00000042977
Atlantic salmon	MODERN SPECIES	11	zp3c (ENSSSAG00000079310)	ENSSSAG00000079308	ENSSSAG00000112980	zgc:175214 (ENSSSAG00000110688) #7	pdcd11 (ENSSSAG00000079293) #8	inab (ENSSSAG00000079284) #11	nt5c2b (ENSSSAG00000078886) #12	ENSSSAG00000000557 #13	as3mt (ENSSSAG00000000508) #14	wbp1lb (ENSSSAG00000111043) #15	poll (ENSSSAG00000008385) #17	dpcd (ENSSSAG00000000437) #18	fgf8b (ENSSSAG00000097919) #19	ENSSSAG00000000388 #20	lbx1b (ENSSSAG00000106457) ##21	cenpk (ENSSSAG00000000322) #22	ENSSSAG00000078828 #23	ENSSSAG00000077953	ENSSSAG00000077417	ENSSSAG00000077370	ENSSSAG00000077363	ENSSSAG00000006741	RIN2 (ENSSSAG00000077352)	SLC24A3 (ENSSSAG00000077343)	dtd1 (ENSSSAG00000077334)	ENSSSAG00000089494	SLK (ENSSSAG00000077165)	stn1 (ENSSSAG00000009712)	SH3PXD2A (ENSSSAG00000077123)	neurl1aa (ENSSSAG00000009737)	ENSSSAG00000075924
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	42	ENSGT01030000234610.b.a.b.a.j	ENSGT00940000166025.a.e #7	ENSGT00390000012228.n #8	ENSGT00940000166377.h #9	ENSGT00940000153342.a.e.b #10	ENSGT00940000154418.a.a.b.c.a #11	ENSGT00940000163289.b.a.a.f #12	ENSGT00940000159034 #13	ENSGT00390000001742.a.m #14	ENSGT00950000183109.c.a.a.a.b.b.b #15	ENSGT00940000158515.l #17	ENSGT00390000014031.i #18	ENSGT00940000159518.b.g #19	ENSGT00940000164095.b.b #20	ENSGT00940000164611.b.c.b ##21	ENSGT00390000006243.m #22	ENSGT00940000155884.b.d #23	ENSGT00940000155134.z.f.a.b	ENSGT00940000155933.b.b.e.b	ENSGT00950000183029.B.j.f	ENSGT01100000263476.A.b.a.a	ENSGT00940000154866.B.b.e	ENSGT01030000234532.A.a.a.b.k	ENSGT01030000234532.A.a.a.b.j.b.g	ENSGT00940000153431.b.r.a	ENSGT00940000156184.a.i.a	ENSGT00390000000909.f	ENSGT00940000157732.f.a.e.b	ENSGT00940000156696.B.g	ENSGT01030000234563.b.a.b.a.b.a.c.a.a	ENSGT00940000164982.b.b
Oncorhynchus_a	ANCESTRAL SPECIES	38	ENSGT00940000166025.a.e #7	ENSGT00390000012228.n #8	ENSGT00940000166377.h #9	ENSGT00940000154418.a.a.b.d #11	ENSGT00940000163289.b.a.a.f #12	ENSGT00940000159034.q.a #13	ENSGT00390000001742.a.m #14	ENSGT00950000183109.c.a.a.a.b.b.b #15	ENSGT00940000158515.l.b #17	ENSGT00940000158515.k.b #17	ENSGT00390000014031.i #18	ENSGT00940000158515.l.a #17	ENSGT00940000159518.b.g #19	ENSGT00940000164095.b.b #20	ENSGT00940000164611.b.c.b ##21	ENSGT00390000006243.m #22	ENSGT00940000155884.b.d #23	ENSGT00940000155134.z.f.a.b	ENSGT00940000155933.b.b.e.b	ENSGT00950000183029.B.j.f	ENSGT01100000263476.A.b.a.b.b.a.b	ENSGT00940000154866.B.b.e	ENSGT01030000234532.A.a.a.b.k	ENSGT00940000153431.b.r.a	ENSGT00940000156184.a.i.a	ENSGT00390000000909.f	ENSGT00940000157732.f.a.e.b	ENSGT00940000156696.B.g	ENSGT01030000234563.b.a.b.a.b.a.c.a.a	ENSGT00940000164982.b.b	ENSGT00940000159130.i.a
Coho salmon	MODERN SPECIES	12	pdcd11 (ENSOKIG00005027405) #8	atp5md (ENSOKIG00005027353) #9	taf5 (ENSOKIG00005027198) #10	ENSOKIG00005027173	inab (ENSOKIG00005027163) #11	nt5c2b (ENSOKIG00005026543) #12	CNNM2 (ENSOKIG00005026462) #13	as3mt (ENSOKIG00005026319) #14	wbp1lb (ENSOKIG00005026288) #15	poll (ENSOKIG00005026221) #17	ENSOKIG00005026202 #17	dpcd (ENSOKIG00005026181) #18	fgf8b (ENSOKIG00005026139) #19	ENSOKIG00005025752 #20	lbx1b (ENSOKIG00005025704) ##21	ENSOKIG00005025692 #22	ENSOKIG00005025675 #23	RIMS1 (ENSOKIG00005024968)	ENSOKIG00005024829	ENSOKIG00005024807	ENSOKIG00005024801	ENSOKIG00005024790	ENSOKIG00005024776	RIN2 (ENSOKIG00005024742)	ENSOKIG00005024713	DTD1 (ENSOKIG00005024674)	slkb (ENSOKIG00005024184)	stn1 (ENSOKIG00005024027)	SH3PXD2A (ENSOKIG00005023934)	neurl1aa (ENSOKIG00005023865)	ENSOKIG00005019315
Chinook salmon	MODERN SPECIES	270															slc2a15b (ENSOTSG00005014247) #20	cenpk (ENSOTSG00005014245) #22	SMAP1 (ENSOTSG00005014242) #23
Rainbow trout	MODERN SPECIES	4	CALHM1 (ENSOMYG00000027719)	zgc:175214 (ENSOMYG00000027731) #7	pdcd11 (ENSOMYG00000027938) #8	atp5md (ENSOMYG00000028298) #9	taf5 (ENSOMYG00000028324) #10	inab (ENSOMYG00000028395) #11	nt5c2b (ENSOMYG00000029057) #12	ENSOMYG00000030734 #13	as3mt (ENSOMYG00000030751) #14	wbp1lb (ENSOMYG00000030780) #15	poll (ENSOMYG00000030792) #17	dpcd (ENSOMYG00000030819) #18	fgf8b (ENSOMYG00000003927) #19	ENSOMYG00000030866 #20	lbx1b (ENSOMYG00000030905) ##21	cenpk (ENSOMYG00000030919) #22	ENSOMYG00000030949 #23	ENSOMYG00000031395	ENSOMYG00000034676	ENSOMYG00000035209	ENSOMYG00000035283	ENSOMYG00000073188	ENSOMYG00000035318	RIN2 (ENSOMYG00000035334)	ENSOMYG00000063915	SLC24A3 (ENSOMYG00000035348)	DTD1 (ENSOMYG00000035372)	SLK (ENSOMYG00000035986)	stn1 (ENSOMYG00000040274)	SH3PXD2A (ENSOMYG00000040294)	ENSOMYG00000056017
Oncorhynchus	ANCESTRAL SPECIES	1	ENSGT01030000234567.A.a.a.a.a.b.f.f	ENSGT01050000244827.D.b.b.b.d	ENSGT01030000234610.b.a.b.a.i	ENSGT00940000166025.a.f #7	ENSGT00390000012228.m #8	ENSGT00940000166377.g #9	ENSGT00940000153342.a.f #10	ENSGT00940000154418.a.a.b.c.b #11	ENSGT00390000001742.a.n #14	ENSGT00950000183109.c.a.a.a.b.b.a #15	ENSGT00940000158515.k.a #17	ENSGT00390000014031.j #18	ENSGT00940000159518.b.h #19	ENSGT00940000164095.b.a #20	ENSGT00940000164611.b.c.a ##21	ENSGT00390000006243.n #22	ENSGT00940000155884.b.c #23	ENSGT00940000155134.z.e	ENSGT01080000258962	ENSGT00940000155933.b.b.e.a	ENSGT00950000183029.B.j.e.b.c.a	ENSGT01100000263476.A.b.a.b.b.a.a	ENSGT01100000263476.A.b.a.b.a	ENSGT00940000154866.B.b.f	ENSGT01030000234532.A.a.a.b.j.b.h	ENSGT00940000153431.b.r.b	ENSGT00980000198902	ENSGT00940000156184.a.j	ENSGT00390000000909.e	ENSGT00940000157732.f.a.e.a	ENSGT00940000156696.B.h.a
Oncorhynchus_a	ANCESTRAL SPECIES	51	ENSGT01030000234610.b.a.b.a.i	ENSGT00940000166025.a.f #7	ENSGT00390000012228.m #8	ENSGT00940000166377.g #9	ENSGT00940000153342.a.f #10	ENSGT00940000154418.a.a.b.c.b #11	ENSGT00940000163289.b.a.a.e #12	ENSGT00940000159034.r #13	ENSGT00390000001742.a.n #14	ENSGT00950000183109.c.a.a.a.b.b.a #15	ENSGT00940000158515.k.a #17	ENSGT00390000014031.j #18	ENSGT00940000159518.b.h #19	ENSGT00940000164095.b.a #20	ENSGT00940000164611.b.c.a ##21	ENSGT00390000006243.n #22	ENSGT00940000155884.b.c #23	ENSGT01080000258962	ENSGT00940000155933.b.b.e.a	ENSGT00950000183029.B.j.e.b.c.a	ENSGT01100000263476.A.b.a.b.b.a.a	ENSGT01100000263476.A.b.a.b.a	ENSGT00940000154866.B.b.f	ENSGT01030000234532.A.a.a.b.j.b.h	ENSGT01030000234532.A.a.a.b.j.b.g	ENSGT00940000153431.b.r.b	ENSGT00980000198902	ENSGT00940000156184.a.j	ENSGT00390000000909.e	ENSGT00940000157732.f.a.e.a	ENSGT00940000156696.B.h.a
Chinook salmon	MODERN SPECIES	88														slc2a15b (ENSOTSG00005044578) #20	lbx1b (ENSOTSG00005044580) ##21	cenpk (ENSOTSG00005044581) #22	ENSOTSG00005044583 #23	ENSOTSG00005044587	RIMS1 (ENSOTSG00005044599)	ENSOTSG00005045467	ENSOTSG00005045682	EEF1A1 (ENSOTSG00005045683)	ENSOTSG00005037443	ENSOTSG00005037445	RIN2 (ENSOTSG00005037448)
Coho salmon	MODERN SPECIES		zgc:175214 (ENSOKIG00005000032) #7	pdcd11 (ENSOKIG00005035428) #8	atp5md (ENSOKIG00005035336) #9	taf5 (ENSOKIG00005034921) #10	inab (ENSOKIG00005034898) #11	nt5c2b (ENSOKIG00005034097) #12	CNNM2 (ENSOKIG00005034003) #13	as3mt (ENSOKIG00005033893) #14	wbp1lb (ENSOKIG00005033879) #15	poll (ENSOKIG00005033862) #17	dpcd (ENSOKIG00005033839) #18	fgf8b (ENSOKIG00005033833) #19	ENSOKIG00005033829	ENSOKIG00005033542 #20	lbx1b (ENSOKIG00005033488) ##21	cenpk (ENSOKIG00005033460) #22	ENSOKIG00005033446 #23	ENSOKIG00005033433	RIMS1 (ENSOKIG00005031962)	ENSOKIG00005031804	ENSOKIG00005031032	ENSOKIG00005030893	ENSOKIG00005030879	ENSOKIG00005030848	RIN2 (ENSOKIG00005030826)	ENSOKIG00005030802	ENSOKIG00005030775	SLK (ENSOKIG00005024536)	stn1 (ENSOKIG00005024324)	ENSOKIG00005024292	SH3PXD2A (ENSOKIG00005024253)
Rainbow trout	MODERN SPECIES	8	zgc:175214 (ENSOMYG00000013756) #7	pdcd11 (ENSOMYG00000012951) #8	atp5md (ENSOMYG00000012813) #9	taf5 (ENSOMYG00000012803) #10	inab (ENSOMYG00000012795) #11	ENSOMYG00000068185	nt5c2b (ENSOMYG00000012141) #12	ENSOMYG00000049904	as3mt (ENSOMYG00000029994) #14	wbp1lb (ENSOMYG00000030012) #15	poll (ENSOMYG00000030037) #17	dpcd (ENSOMYG00000030065) #18	fgf8b (ENSOMYG00000069031) #19	ENSOMYG00000030288 #20	lbx1b (ENSOMYG00000030762) ##21	cenpk (ENSOMYG00000030767) #22	ENSOMYG00000030782 #23	ENSOMYG00000030981	ENSOMYG00000031469	ENSOMYG00000060658	ENSOMYG00000032529	ENSOMYG00000032590	ENSOMYG00000032618	RIN2 (ENSOMYG00000032641)	ENSOMYG00000056365	SLC24A3 (ENSOMYG00000032700)	DTD1 (ENSOMYG00000032719)	ENSOMYG00000074597	ENSOMYG00000077173	SLK (ENSOMYG00000033386)	stn1 (ENSOMYG00000037658)
Northern pike	MODERN SPECIES	8	zgc:175214 (ENSELUG00000026896) #7	pdcd11 (ENSELUG00000004211) #8	atp5md (ENSELUG00000004222) #9	taf5 (ENSELUG00000004248) #10	inab (ENSELUG00000004266) #11	nt5c2b (ENSELUG00000004308) #12	CNNM2 (ENSELUG00000004339) #13	as3mt (ENSELUG00000004368) #14	wbp1lb (ENSELUG00000004387) #15	poll (ENSELUG00000004410) #17	dpcd (ENSELUG00000004483) #18	fgf8b (ENSELUG00000004508) #19	slc2a15b (ENSELUG00000004537) #20	ENSELUG00000029821	lbx1b (ENSELUG00000004561) ##21	cenpk (ENSELUG00000004572) #22	SMAP1 (ENSELUG00000004599) #23	RIMS1 (ENSELUG00000004662)	ENSELUG00000025992	ENSELUG00000004764	ENSELUG00000004838	RIN2 (ENSELUG00000004895)	SLC24A3 (ENSELUG00000004952)	dtd1 (ENSELUG00000004973)	ENSELUG00000004991	slkb (ENSELUG00000005050)	stn1 (ENSELUG00000005119)	SH3PXD2A (ENSELUG00000005225)	neurl1aa (ENSELUG00000005271)	ENSELUG00000005412	ENSELUG00000005482
Acanthomorphata	ANCESTRAL SPECIES	44	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.b ##12	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22
Euacanthomorphacea	ANCESTRAL SPECIES	3	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Percomorphaceae	ANCESTRAL SPECIES	20	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Tiger tail seahorse	MODERN SPECIES	382	pdcd11 (ENSHCOG00000016006) #8	taf5 (ENSHCOG00000015986) #10	atp5md (ENSHCOG00000015974) #9	inab (ENSHCOG00000015969) #11	nt5c2b (ENSHCOG00000015940) #12	CNNM2 (ENSHCOG00000015891) #13	as3mt (ENSHCOG00000015743) #14	as3mt (ENSHCOG00000015739) #14	wbp1lb (ENSHCOG00000015735) #15	ENSHCOG00000015728	poll (ENSHCOG00000015721) #17	dpcd (ENSHCOG00000015714) #18	fgf8b (ENSHCOG00000015697) #19	slc2a15b (ENSHCOG00000015684) #20	lbx1b (ENSHCOG00000015655) #21	cenpk (ENSHCOG00000015628) #22	SMAP1 (ENSHCOG00000015623) #23	krt94 (ENSHCOG00000015619) #24	krt98 (ENSHCOG00000015617) #25	krt15 (ENSHCOG00000015609) #28	krt99 (ENSHCOG00000015602) #29	ENSHCOG00000000435 #30	ENSHCOG00000015579 #31	jupa (ENSHCOG00000015466) #32	KCNIP2 (ENSHCOG00000015439) #34	armh3 (ENSHCOG00000015410)	ldb1b (ENSHCOG00000015353)	ENSHCOG00000015325	ENSHCOG00000015318	cant1b (ENSHCOG00000015276)	afmid (ENSHCOG00000015242)
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Eupercaria	ANCESTRAL SPECIES	2	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Tetraodontidae	ANCESTRAL SPECIES	16	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258.e #24	ENSGT01050000244823.d.b.a.a	ENSGT00390000009084	ENSGT00950000183012.B.b	ENSGT00950000183079.A.b.c.a.a	ENSGT00940000158380.b	ENSGT01050000244891.B	ENSGT00390000002721	ENSGT01030000234532.B.e.a.a.b.d.a	ENSGT00390000011081.q.a	ENSGT00940000157347	ENSGT00390000017246	ENSGT00950000182938.b.b.b.a.b.a	ENSGT00940000158695
Fugu	MODERN SPECIES	8	zgc:175214 (ENSTRUG00000026105) #7	pdcd11 (ENSTRUG00000014291) #8	atp5md (ENSTRUG00000019734) #9	taf5 (ENSTRUG00000014486) #10	inab (ENSTRUG00000014528) #11	nt5c2b (ENSTRUG00000014556) #12	CNNM2 (ENSTRUG00000014689) #13	as3mt (ENSTRUG00000030244) #14	wbp1lb (ENSTRUG00000014761) #15	poll (ENSTRUG00000014779) #17	dpcd (ENSTRUG00000014821) #18	fgf8b (ENSTRUG00000022621) #19	ENSTRUG00000031732	slc2a15b (ENSTRUG00000014883) #20	lbx1b (ENSTRUG00000015003) #21	cenpk (ENSTRUG00000015014) #22	nsmce4a (ENSTRUG00000015029)	SMAP1 (ENSTRUG00000015069) #23	krt94 (ENSTRUG00000015114) #24	ENSTRUG00000015253	nsmce1 (ENSTRUG00000015276)	vps37a (ENSTRUG00000015286)	MICU3 (ENSTRUG00000015336)	fgf20a (ENSTRUG00000015359)	kpna7 (ENSTRUG00000015372)	xpa (ENSTRUG00000027763)	slc24a2 (ENSTRUG00000015445)	H3C1 (ENSTRUG00000023777)	ENSTRUG00000023039	ENSTRUG00000025869	ENSTRUG00000032970
Tetraodon	MODERN SPECIES	10	ENSTNIG00000012083	CALHM1 (ENSTNIG00000012084)	pdcd11 (ENSTNIG00000012085) #8	taf5 (ENSTNIG00000012086) #10	inab (ENSTNIG00000012087) #11	nt5c2b (ENSTNIG00000012088) #12	ENSTNIG00000001542 #13	CNNM2 (ENSTNIG00000012089) #13	as3mt (ENSTNIG00000001399) #14	as3mt (ENSTNIG00000000132) #14	wbp1lb (ENSTNIG00000012090) #15	poll (ENSTNIG00000012091) #17	dpcd (ENSTNIG00000012092) #18	slc2a15b (ENSTNIG00000019369) #20	lbx1b (ENSTNIG00000019368) #21	cenpk (ENSTNIG00000000157) #22	SMAP1 (ENSTNIG00000019367) #23	ENSTNIG00000001746 #24	KRT19 (ENSTNIG00000019366) #24	ENSTNIG00000019365	nsmce1 (ENSTNIG00000019364)	vps37a (ENSTNIG00000019363)	MICU3 (ENSTNIG00000019362)	fgf20a (ENSTNIG00000019361)	kpna7 (ENSTNIG00000000879)	xpa (ENSTNIG00000019360)	kpna7 (ENSTNIG00000000764)	slc24a2 (ENSTNIG00000019359)	H3-7 (ENSTNIG00000001465)	ENSTNIG00000019358	nansa (ENSTNIG00000018070)
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Ballan wrasse	MODERN SPECIES	186	CALHM1 (ENSLBEG00000010161)	zgc:175214 (ENSLBEG00000010140) #7	ENSLBEG00000009990 #8	atp5md (ENSLBEG00000009925) #9	taf5 (ENSLBEG00000009877) #10	inab (ENSLBEG00000009843) #11	nt5c2b (ENSLBEG00000009773) #12	CNNM2 (ENSLBEG00000009710) #13	as3mt (ENSLBEG00000009674) #14	wbp1lb (ENSLBEG00000009633) #15	poll (ENSLBEG00000009587) #17	dpcd (ENSLBEG00000009557) #18	fgf8b (ENSLBEG00000009512) #19	slc2a15b (ENSLBEG00000009474) #20	lbx1b (ENSLBEG00000009451) #21	cenpk (ENSLBEG00000009428) #22	SMAP1 (ENSLBEG00000009408) #23	krt94 (ENSLBEG00000009359) #24	krt98 (ENSLBEG00000009343) #25	krt15 (ENSLBEG00000009308) #28	krt98 (ENSLBEG00000009274) #25	krt15 (ENSLBEG00000009240) #28	krt99 (ENSLBEG00000009101) #29	ENSLBEG00000009061 #30	ENSLBEG00000008907 #31	jupa (ENSLBEG00000008780) #32	KCNIP2 (ENSLBEG00000008729) #34
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Eupecaria_C	ANCESTRAL SPECIES	22	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Gilthead seabream	MODERN SPECIES		ITPRIP (ENSSAUG00010005369)	zgc:175214 (ENSSAUG00010005365) #7	pdcd11 (ENSSAUG00010005292) #8	atp5md (ENSSAUG00010005272) #9	taf5 (ENSSAUG00010005046) #10	inab (ENSSAUG00010005042) #11	nt5c2b (ENSSAUG00010003314) #12	CNNM2 (ENSSAUG00010003267) #13	as3mt (ENSSAUG00010003260) #14	wbp1lb (ENSSAUG00010003253) #15	poll (ENSSAUG00010003250) #17	dpcd (ENSSAUG00010003248) #18	fgf8b (ENSSAUG00010003246) #19	slc2a15b (ENSSAUG00010003054) #20	lbx1b (ENSSAUG00010003024) #21	cenpk (ENSSAUG00010003014) #22	SMAP1 (ENSSAUG00010003003) #23	krt98 (ENSSAUG00010002917) #25	krt15 (ENSSAUG00010002881) #28	krt99 (ENSSAUG00010002863) #29	ENSSAUG00010002849 #30	ENSSAUG00010002410 #31	jupa (ENSSAUG00010001232) #32	KCNIP2 (ENSSAUG00010001214) #34	armh3 (ENSSAUG00010001174)	ldb1b (ENSSAUG00010001148)	si:dkey-93h22.8 (ENSSAUG00010001142)	ENSSAUG00010001140	ENSSAUG00010001136	ENSSAUG00010001132	cant1b (ENSSAUG00010001126)
Perciformes	ANCESTRAL SPECIES	2	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Perciformes_a	ANCESTRAL SPECIES		ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Pike perch	MODERN SPECIES	8	CALHM1 (ENSSLUG00000007787)	zgc:175214 (ENSSLUG00000007794) #7	pdcd11 (ENSSLUG00000007813) #8	atp5md (ENSSLUG00000007888) #9	taf5 (ENSSLUG00000007908) #10	inab (ENSSLUG00000008179) #11	nt5c2b (ENSSLUG00000008262) #12	CNNM2 (ENSSLUG00000009525) #13	as3mt (ENSSLUG00000009747) #14	wbp1lb (ENSSLUG00000009766) #15	poll (ENSSLUG00000009770) #17	dpcd (ENSSLUG00000009777) #18	fgf8b (ENSSLUG00000009782) #19	slc2a15b (ENSSLUG00000009795) #20	lbx1b (ENSSLUG00000009812) #21	cenpk (ENSSLUG00000009823) #22	SMAP1 (ENSSLUG00000009833) #23	krt94 (ENSSLUG00000009847) #24	krt98 (ENSSLUG00000009869) #25	ENSSLUG00000009915 #25	krt98 (ENSSLUG00000009937) #25	krt15 (ENSSLUG00000009939) #28	krt99 (ENSSLUG00000009950) #29	ENSSLUG00000009982 #30	ENSSLUG00000009988 #31	jupa (ENSSLUG00000010039) #32	KCNIP2 (ENSSLUG00000010934) #34	ENSSLUG00000010956	armh3 (ENSSLUG00000010972)	ldb1b (ENSSLUG00000011064)	ENSSLUG00000011635
Channel bull blenny	MODERN SPECIES		CALHM1 (ENSCGOG00000000163)	zgc:175214 (ENSCGOG00000000156) #7	pdcd11 (ENSCGOG00000000129) #8	atp5md (ENSCGOG00000008688) #9	taf5 (ENSCGOG00000008661) #10	inab (ENSCGOG00000008659) #11	nt5c2b (ENSCGOG00000008287) #12	CNNM2 (ENSCGOG00000008265) #13	as3mt (ENSCGOG00000008221) #14	wbp1lb (ENSCGOG00000008213) #15	poll (ENSCGOG00000008203) #17	dpcd (ENSCGOG00000008201) #18	fgf8b (ENSCGOG00000008193) #19	slc2a15b (ENSCGOG00000007928) #20	lbx1b (ENSCGOG00000007915) #21	cenpk (ENSCGOG00000007910) #22	SMAP1 (ENSCGOG00000007902) #23	krt94 (ENSCGOG00000007899) #24	krt98 (ENSCGOG00000007897) #25	krt15 (ENSCGOG00000007877) #28	krt99 (ENSCGOG00000007820) #29	ENSCGOG00000007818 #30	ENSCGOG00000007811 #31	jupa (ENSCGOG00000004237) #32	KCNIP2 (ENSCGOG00000003983) #34	armh3 (ENSCGOG00000003464)	ldb1b (ENSCGOG00000002517)	si:dkey-93h22.8 (ENSCGOG00000002491)	ENSCGOG00000002474	cant1b (ENSCGOG00000002471)	afmid (ENSCGOG00000002460)
Cottioidei	ANCESTRAL SPECIES	3	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Stickleback	MODERN SPECIES	4	SMURF2 (ENSGACG00000018228)	ENSGACG00000018230	pdcd11 (ENSGACG00000018233) #8	taf5 (ENSGACG00000018238) #10	inab (ENSGACG00000018244) #11	nt5c2b (ENSGACG00000018247) #12	ENSGACG00000018260	CNNM2 (ENSGACG00000018261) #13	as3mt (ENSGACG00000018262) #14	wbp1lb (ENSGACG00000018270) #15	poll (ENSGACG00000018272) #17	dpcd (ENSGACG00000018274) #18	fgf8b (ENSGACG00000018276) #19	slc2a15b (ENSGACG00000018278) #20	lbx1b (ENSGACG00000018293) #21	cenpk (ENSGACG00000018295) #22	SMAP1 (ENSGACG00000018297) #23	krt94 (ENSGACG00000018299) #24	krt98 (ENSGACG00000018303) #25	krt15 (ENSGACG00000018310) #28	krt99 (ENSGACG00000018321) #29	ENSGACG00000018326 #30	ENSGACG00000018327 #31	jupa (ENSGACG00000018328) #32	KCNIP2 (ENSGACG00000018330) #34	armh3 (ENSGACG00000018333)	ldb1b (ENSGACG00000018336)	ENSGACG00000018338	ENSGACG00000018339	ENSGACG00000018341	cant1b (ENSGACG00000018345)
Lumpfish	MODERN SPECIES		CALHM1 (ENSCLMG00005000783)	zgc:175214 (ENSCLMG00005000782) #7	pdcd11 (ENSCLMG00005000779) #8	atp5md (ENSCLMG00005000778) #9	taf5 (ENSCLMG00005000736) #10	inab (ENSCLMG00005000727) #11	nt5c2b (ENSCLMG00005000335) #12	CNNM2 (ENSCLMG00005000165) #13	as3mt (ENSCLMG00005000078) #14	wbp1lb (ENSCLMG00005000058) #15	poll (ENSCLMG00005000053) #17	dpcd (ENSCLMG00005000050) #18	fgf8b (ENSCLMG00005000044) #19	slc2a15b (ENSCLMG00005000030) #20	lbx1b (ENSCLMG00005000027) #21	cenpk (ENSCLMG00005000017) #22	SMAP1 (ENSCLMG00005000004) #23	krt94 (ENSCLMG00005016389) #24	krt98 (ENSCLMG00005016373) #25	krt15 (ENSCLMG00005016371) #28	krt15 (ENSCLMG00005016364) #28	krt15 (ENSCLMG00005016356) #28	krt99 (ENSCLMG00005016355) #29	ENSCLMG00005016353 #30	ENSCLMG00005015793 #31	jupa (ENSCLMG00005015158) #32	KCNIP2 (ENSCLMG00005015013) #34	armh3 (ENSCLMG00005014981)	ldb1b (ENSCLMG00005014963)	si:dkey-93h22.8 (ENSCLMG00005014957)	ENSCLMG00005014950
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Anabantaria	ANCESTRAL SPECIES	1	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Anabantoidei	ANCESTRAL SPECIES		ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Climbing perch	MODERN SPECIES		CALHM1 (ENSATEG00000021082)	zgc:175214 (ENSATEG00000026648) #7	pdcd11 (ENSATEG00000021043) #8	atp5md (ENSATEG00000021023) #9	taf5 (ENSATEG00000021013) #10	inab (ENSATEG00000020981) #11	nt5c2b (ENSATEG00000020922) #12	ENSATEG00000020907 #13	as3mt (ENSATEG00000020869) #14	wbp1lb (ENSATEG00000029225) #15	poll (ENSATEG00000020832) #17	dpcd (ENSATEG00000020802) #18	fgf8b (ENSATEG00000028269) #19	slc2a15b (ENSATEG00000020655) #20	lbx1b (ENSATEG00000020642) #21	cenpk (ENSATEG00000020632) #22	ENSATEG00000020598 #23	krt94 (ENSATEG00000020591) #24	krt98 (ENSATEG00000020567) #25	krt15 (ENSATEG00000020542) #28	krt99 (ENSATEG00000020521) #29	ENSATEG00000020511 #30	ENSATEG00000020436 #31	jupa (ENSATEG00000020387) #32	KCNIP2 (ENSATEG00000020347) #34	ARMH3 (ENSATEG00000020255)	ldb1b (ENSATEG00000020230)	ENSATEG00000020218	ENSATEG00000020161	cant1b (ENSATEG00000020130)	afmid (ENSATEG00000020116)
Siamese fighting fish	MODERN SPECIES		CALHM1 (ENSBSLG00000004601)	zgc:175214 (ENSBSLG00000004607) #7	pdcd11 (ENSBSLG00000004611) #8	ENSBSLG00000004614	taf5 (ENSBSLG00000004941) #10	inab (ENSBSLG00000005764) #11	nt5c2b (ENSBSLG00000005814) #12	CNNM2 (ENSBSLG00000006172) #13	as3mt (ENSBSLG00000006175) #14	wbp1lb (ENSBSLG00000006278) #15	poll (ENSBSLG00000006326) #17	dpcd (ENSBSLG00000006378) #18	fgf8b (ENSBSLG00000006445) #19	slc2a15b (ENSBSLG00000006540) #20	lbx1b (ENSBSLG00000006829) #21	cenpk (ENSBSLG00000006834) #22	SMAP1 (ENSBSLG00000006854) #23	krt15 (ENSBSLG00000000117) #28	krt98 (ENSBSLG00000000226) #25	krt99 (ENSBSLG00000000440) #29	ENSBSLG00000000461 #30	ENSBSLG00000000502 #31	jupa (ENSBSLG00000000630) #32	KCNIP2 (ENSBSLG00000000751) #34	armh3 (ENSBSLG00000000791)	ldb1b (ENSBSLG00000001219)	si:dkey-93h22.8 (ENSBSLG00000001254)	ENSBSLG00000001281	cant1b (ENSBSLG00000001309)	afmid (ENSBSLG00000001322)	SIRT7 (ENSBSLG00000001364)
Zig-zag eel	MODERN SPECIES		ENSMAMG00000009508	CALHM1 (ENSMAMG00000009513)	zgc:175214 (ENSMAMG00000009533) #7	pdcd11 (ENSMAMG00000009572) #8	atp5md (ENSMAMG00000009637) #9	taf5 (ENSMAMG00000009605) #10	inab (ENSMAMG00000009645) #11	nt5c2b (ENSMAMG00000009657) #12	ENSMAMG00000009701 #13	as3mt (ENSMAMG00000009749) #14	wbp1lb (ENSMAMG00000009771) #15	poll (ENSMAMG00000009780) #17	dpcd (ENSMAMG00000009826) #18	fgf8b (ENSMAMG00000024638) #19	lbx1b (ENSMAMG00000010182) #21	cenpk (ENSMAMG00000010189) #22	ENSMAMG00000010206 #23	krt94 (ENSMAMG00000010209) #24	krt98 (ENSMAMG00000010267) #25	krt15 (ENSMAMG00000010835) #28	krt99 (ENSMAMG00000010847) #29	ENSMAMG00000010885 #30	ENSMAMG00000010892 #31	jupa (ENSMAMG00000010941) #32	KCNIP2 (ENSMAMG00000011011) #34	ARMH3 (ENSMAMG00000011040)	ldb1b (ENSMAMG00000011142)	si:dkey-93h22.8 (ENSMAMG00000011169)	ENSMAMG00000011193	cant1b (ENSMAMG00000024398)	afmid (ENSMAMG00000011213)
Carangaria	ANCESTRAL SPECIES		ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Carangaria_A	ANCESTRAL SPECIES	24	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Seriola	ANCESTRAL SPECIES	11	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Yellowtail amberjack	MODERN SPECIES	3041	CALHM1 (ENSSLDG00000010196)	zgc:175214 (ENSSLDG00000010213) #7	pdcd11 (ENSSLDG00000010228) #8	ENSSLDG00000010269	taf5 (ENSSLDG00000010283) #10	inab (ENSSLDG00000010328) #11	nt5c2b (ENSSLDG00000010353) #12	CNNM2 (ENSSLDG00000010430) #13	as3mt (ENSSLDG00000010514) #14	wbp1lb (ENSSLDG00000010555) #15	poll (ENSSLDG00000010575) #17	dpcd (ENSSLDG00000010604) #18	fgf8b (ENSSLDG00000010661) #19	slc2a15b (ENSSLDG00000010809) #20	lbx1b (ENSSLDG00000010867) #21	cenpk (ENSSLDG00000010881) #22	SMAP1 (ENSSLDG00000010906) #23	krt94 (ENSSLDG00000010940) #24	krt98 (ENSSLDG00000010975) #25	krt15 (ENSSLDG00000011011) #28	krt99 (ENSSLDG00000011125) #29	ENSSLDG00000011518 #30	ENSSLDG00000011569 #31	jupa (ENSSLDG00000011768) #32	KCNIP2 (ENSSLDG00000011824) #34	armh3 (ENSSLDG00000011864)	ldb1b (ENSSLDG00000011963)	si:dkey-93h22.8 (ENSSLDG00000012010)	ENSSLDG00000012042	cant1b (ENSSLDG00000012095)	afmid (ENSSLDG00000012120)
Greater amberjack	MODERN SPECIES	84	CALHM1 (ENSSDUG00000021282)	zgc:175214 (ENSSDUG00000021288) #7	pdcd11 (ENSSDUG00000021302) #8	atp5md (ENSSDUG00000021405) #9	taf5 (ENSSDUG00000021414) #10	inab (ENSSDUG00000021437) #11	nt5c2b (ENSSDUG00000021446) #12	CNNM2 (ENSSDUG00000021457) #13	as3mt (ENSSDUG00000021471) #14	wbp1lb (ENSSDUG00000021479) #15	poll (ENSSDUG00000021485) #17	dpcd (ENSSDUG00000021500) #18	fgf8b (ENSSDUG00000021510) #19	slc2a15b (ENSSDUG00000000101) #20	lbx1b (ENSSDUG00000000191) #21	cenpk (ENSSDUG00000000210) #22	SMAP1 (ENSSDUG00000000217) #23	krt94 (ENSSDUG00000000267) #24	krt98 (ENSSDUG00000000282) #25	krt15 (ENSSDUG00000000355) #28	krt99 (ENSSDUG00000000457) #29	ENSSDUG00000000957 #30	ENSSDUG00000000985 #31	jupa (ENSSDUG00000001059) #32	KCNIP2 (ENSSDUG00000001121) #34	armh3 (ENSSDUG00000001167)	ldb1b (ENSSDUG00000001247)	si:dkey-93h22.8 (ENSSDUG00000001268)	ENSSDUG00000001303	cant1b (ENSSDUG00000001389)	afmid (ENSSDUG00000001414)
Barramundi perch	MODERN SPECIES	123	CALHM1 (ENSLCAG00010003733)	zgc:175214 (ENSLCAG00010003737) #7	pdcd11 (ENSLCAG00010003747) #8	atp5md (ENSLCAG00010003750) #9	taf5 (ENSLCAG00010003754) #10	inab (ENSLCAG00010003759) #11	nt5c2b (ENSLCAG00010003780) #12	CNNM2 (ENSLCAG00010003833) #13	as3mt (ENSLCAG00010003837) #14	wbp1lb (ENSLCAG00010003854) #15	poll (ENSLCAG00010003869) #17	dpcd (ENSLCAG00010003873) #18	fgf8b (ENSLCAG00010003879) #19	slc2a15b (ENSLCAG00010003888) #20	lbx1b (ENSLCAG00010003893) #21	cenpk (ENSLCAG00010003895) #22	SMAP1 (ENSLCAG00010003899) #23	krt94 (ENSLCAG00010003907) #24	krt98 (ENSLCAG00010003920) #25	krt15 (ENSLCAG00010003939) #28	krt99 (ENSLCAG00010004003) #29	ENSLCAG00010004025 #30	ENSLCAG00010004050 #31	jupa (ENSLCAG00010004132) #32	KCNIP2 (ENSLCAG00010004262) #34	armh3 (ENSLCAG00010004845)	ldb1b (ENSLCAG00010004959)	ENSLCAG00010005143	cant1b (ENSLCAG00010005148)	afmid (ENSLCAG00010005154)	tk1 (ENSLCAG00010005161)
Pleuronectoidei	ANCESTRAL SPECIES	22	ENSGT01050000244827.D.b.b.b	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093	ENSGT00390000011309
Turbot	MODERN SPECIES	20	CALHM1 (ENSSMAG00000006637)	zgc:175214 (ENSSMAG00000033852) #7	pdcd11 (ENSSMAG00000006612) #8	atp5md (ENSSMAG00000006592) #9	taf5 (ENSSMAG00000006561) #10	inab (ENSSMAG00000006549) #11	nt5c2b (ENSSMAG00000006511) #12	ENSSMAG00000006481 #13	as3mt (ENSSMAG00000006450) #14	wbp1lb (ENSSMAG00000021668) #15	dpcd (ENSSMAG00000006362) #18	fgf8b (ENSSMAG00000006337) #19	slc2a15b (ENSSMAG00000006312) #20	poll (ENSSMAG00000006388) #17	lbx1b (ENSSMAG00000036098) #21	cenpk (ENSSMAG00000006290) #22	ENSSMAG00000006263 #23	krt94 (ENSSMAG00000006254) #24	krt98 (ENSSMAG00000006243) #25	krt15 (ENSSMAG00000006227) #28	krt99 (ENSSMAG00000006200) #29	ENSSMAG00000006186 #30	ENSSMAG00000006168 #31	jupa (ENSSMAG00000006134) #32	KCNIP2 (ENSSMAG00000006111) #34	ENSSMAG00000006048	ldb1b (ENSSMAG00000005937)	ENSSMAG00000005860	cant1b (ENSSMAG00000005832)	afmid (ENSSMAG00000005807)	tk1 (ENSSMAG00000005773)
Tongue sole	MODERN SPECIES	19	vps37c (ENSCSEG00000015741)	ENSCSEG00000015754	ENSCSEG00000015764	p2rx3b (ENSCSEG00000015771)	pold4 (ENSCSEG00000015784)	SORBS2 (ENSCSEG00000015794)	ENSCSEG00000015839	ENSCSEG00000015848	cyp4v2a (ENSCSEG00000015855)	mtnr1aa (ENSCSEG00000015868)	fat1a (ENSCSEG00000015927)	frg1 (ENSCSEG00000015950)	asah1b (ENSCSEG00000015956)	slc2a15b (ENSCSEG00000016002) #20	lbx1b (ENSCSEG00000016019) #21	cenpk (ENSCSEG00000016029) #22	ENSCSEG00000016041 #23	krt94 (ENSCSEG00000016058) #24	krt98 (ENSCSEG00000016068) #25	krt15 (ENSCSEG00000016076) #28	ENSCSEG00000016091 #30	jupa (ENSCSEG00000016113) #32	armh3 (ENSCSEG00000016153)	ldb1b (ENSCSEG00000016177)	afmid (ENSCSEG00000016202)	tk1 (ENSCSEG00000016219)	ENSCSEG00000016224	ENSCSEG00000016228	aspscr1 (ENSCSEG00000016235)	ENSCSEG00000016247	ENSCSEG00000016258
Ovalentaria	ANCESTRAL SPECIES		ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Atherinomorphae	ANCESTRAL SPECIES	23	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Cyprinodontiformes	ANCESTRAL SPECIES	24	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Aplocheiloidei	ANCESTRAL SPECIES	31	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Mangrove rivulus	MODERN SPECIES	38	CALHM1 (ENSKMAG00000021204)	zgc:175214 (ENSKMAG00000021197) #7	pdcd11 (ENSKMAG00000021182) #8	atp5md (ENSKMAG00000021173) #9	taf5 (ENSKMAG00000021159) #10	inab (ENSKMAG00000021148) #11	nt5c2b (ENSKMAG00000021101) #12	CNNM2 (ENSKMAG00000021059) #13	as3mt (ENSKMAG00000021033) #14	wbp1lb (ENSKMAG00000021022) #15	poll (ENSKMAG00000020989) #17	dpcd (ENSKMAG00000020966) #18	fgf8b (ENSKMAG00000020954) #19	slc2a15b (ENSKMAG00000020935) #20	lbx1b (ENSKMAG00000020930) #21	cenpk (ENSKMAG00000020916) #22	SMAP1 (ENSKMAG00000020892) #23	krt94 (ENSKMAG00000020377) #24	krt98 (ENSKMAG00000020226) #25	krt15 (ENSKMAG00000020200) #28	krt99 (ENSKMAG00000020185) #29	ENSKMAG00000020171 #30	ENSKMAG00000020079 #31	jupa (ENSKMAG00000020020) #32	KCNIP2 (ENSKMAG00000019986) #34	armh3 (ENSKMAG00000019917)	ldb1b (ENSKMAG00000019878)	si:dkey-93h22.8 (ENSKMAG00000019855)	ENSKMAG00000019823	cant1b (ENSKMAG00000019804)	afmid (ENSKMAG00000019775)
Turquoise killifish	MODERN SPECIES	1611	ENSNFUG00015020664	C3H16ORF13 (ENSNFUG00015020708)	wfikkn1 (ENSNFUG00015020711)	ENSNFUG00015000177	rab40c (ENSNFUG00015000183)	zp3c (ENSNFUG00015000211)	ITPRIP (ENSNFUG00015000220)	CALHM1 (ENSNFUG00015000229)	Nfu_g_1_015927 (ENSNFUG00015000241) #7	PDCD11 (ENSNFUG00015000262) #8	atp5md (ENSNFUG00015000311) #9	taf5 (ENSNFUG00015000359) #10	INAB (ENSNFUG00015000460) #11	nt5c2b (ENSNFUG00015000542) #12	lbx1b (ENSNFUG00015000669) #21	ENSNFUG00015000676 #22	SMAP1 (ENSNFUG00015000682) #23	krt94 (ENSNFUG00015000694) #24	ENSNFUG00015000705	krt98 (ENSNFUG00015000712) #25	krt98 (ENSNFUG00015000761) #25	krt15 (ENSNFUG00015000834) #28	krt99 (ENSNFUG00015000839) #29	ENSNFUG00015000845 #30	ENSNFUG00015000872 #31	jupa (ENSNFUG00015001005) #32	KCNIP2 (ENSNFUG00015001093) #34	armh3 (ENSNFUG00015001107)	LDB1 (ENSNFUG00015001141)	PPRC1 (ENSNFUG00015001224)	ENSNFUG00015001227
Cyprinodontoidei	ANCESTRAL SPECIES	15	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000161979.B.o.cb.d.a.a.a.b.a.a.b.a #16	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a.g #25	ENSGT00950000182969.B.c.a.a.a.h #26	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b
Poecilia	ANCESTRAL SPECIES	6	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000161979.B.o.cb.d.a.a.a.b.a.a.b.a #16	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a.g #25	ENSGT00950000182969.B.c.a.a.a.h #26	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00950000183052.b.c.b.b.a.a.a.b.c.a.a.c #33	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b
NAME_6	ANCESTRAL SPECIES	4	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000161979.B.o.cb.d.a.a.a.b.a.a.b.a #16	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a.g.c #25	ENSGT00950000182969.B.c.a.a.a.h #26	ENSGT00950000182969.B.c.a.a.a.g.d #27	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00950000183052.b.c.b.b.a.a.a.b.c.a.a.c #33	ENSGT00940000157798.b #34	ENSGT00940000154446.a.c.a.b.a #35
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	3612																cenpk (ENSPLAG00000018009) #22
Sailfin molly	MODERN SPECIES	2229														slc2a15b (ENSPLAG00000003784) #20	lbx1b (ENSPLAG00000003812) #21	cenpk (ENSPLAG00000003819) #22
Amazon molly	DUPLICATION
Amazon molly	MODERN SPECIES	263	atp5md (ENSPFOG00000005996) #9	taf5 (ENSPFOG00000005851) #10	inab (ENSPFOG00000005819) #11	nt5c2b (ENSPFOG00000005673) #12	ENSPFOG00000023945	CNNM2 (ENSPFOG00000005465) #13	as3mt (ENSPFOG00000005360) #14	wbp1lb (ENSPFOG00000005308) #15	ENSPFOG00000005288 #16	poll (ENSPFOG00000005193) #17	dpcd (ENSPFOG00000005133) #18	fgf8b (ENSPFOG00000005060) #19	slc2a15b (ENSPFOG00000004745) #20	ENSPFOG00000024163	lbx1b (ENSPFOG00000004721) #21	cenpk (ENSPFOG00000004715) #22	SMAP1 (ENSPFOG00000021952) #23	cenpk (ENSPFOG00000004611) #22	SMAP1 (ENSPFOG00000004432) #23	krt94 (ENSPFOG00000004335) #24	ENSPFOG00000023416 #25	ENSPFOG00000003788 #26	krt98 (ENSPFOG00000004256) #27	krt15 (ENSPFOG00000023468) #28	krt99 (ENSPFOG00000003777) #29	ENSPFOG00000003771 #30	ENSPFOG00000003564 #31	jupa (ENSPFOG00000003394) #32	ENSPFOG00000003377 #33	ENSPFOG00000003366 #35	KCNIP2 (ENSPFOG00000003270) #34
Amazon molly	MODERN SPECIES	263	inab (ENSPFOG00000005819) #11	nt5c2b (ENSPFOG00000005673) #12	ENSPFOG00000023945	CNNM2 (ENSPFOG00000005465) #13	as3mt (ENSPFOG00000005360) #14	wbp1lb (ENSPFOG00000005308) #15	ENSPFOG00000005288 #16	poll (ENSPFOG00000005193) #17	dpcd (ENSPFOG00000005133) #18	fgf8b (ENSPFOG00000005060) #19	slc2a15b (ENSPFOG00000004745) #20	ENSPFOG00000024163	lbx1b (ENSPFOG00000004721) #21	cenpk (ENSPFOG00000004715) #22	SMAP1 (ENSPFOG00000021952) #23	cenpk (ENSPFOG00000004611) #22	SMAP1 (ENSPFOG00000004432) #23	krt94 (ENSPFOG00000004335) #24	ENSPFOG00000023416 #25	ENSPFOG00000003788 #26	krt98 (ENSPFOG00000004256) #27	krt15 (ENSPFOG00000023468) #28	krt99 (ENSPFOG00000003777) #29	ENSPFOG00000003771 #30	ENSPFOG00000003564 #31	jupa (ENSPFOG00000003394) #32	ENSPFOG00000003377 #33	ENSPFOG00000003366 #35	KCNIP2 (ENSPFOG00000003270) #34
Guppy	MODERN SPECIES	439	zgc:175214 (ENSPREG00000000476) #7	pdcd11 (ENSPREG00000000475) #8	atp5md (ENSPREG00000000474) #9	taf5 (ENSPREG00000000473) #10	inab (ENSPREG00000000472) #11	nt5c2b (ENSPREG00000000471) #12	CNNM2 (ENSPREG00000000470) #13	as3mt (ENSPREG00000000469) #14	wbp1lb (ENSPREG00000000468) #15	ENSPREG00000000467 #16	poll (ENSPREG00000000466) #17	dpcd (ENSPREG00000000465) #18	fgf8b (ENSPREG00000000464) #19	slc2a15b (ENSPREG00000000463) #20	lbx1b (ENSPREG00000000462) #21	cenpk (ENSPREG00000000461) #22	SMAP1 (ENSPREG00000000460) #23	krt94 (ENSPREG00000000459) #24	ENSPREG00000000458 #25	krt98 (ENSPREG00000000457) #25	krt15 (ENSPREG00000000456) #28	krt99 (ENSPREG00000000455) #29	ENSPREG00000000454 #30	ENSPREG00000000453 #31	jupa (ENSPREG00000000452) #32	ENSPREG00000000451 #33	KCNIP2 (ENSPREG00000000450) #34	ENSPREG00000000449	armh3 (ENSPREG00000000448)	ldb1b (ENSPREG00000000447)	si:dkey-93h22.8 (ENSPREG00000000446)
Platyfish	MODERN SPECIES	19	zgc:175214 (ENSXMAG00000026427) #7	pdcd11 (ENSXMAG00000004638) #8	taf5 (ENSXMAG00000001343) #10	atp5md (ENSXMAG00000004636) #9	inab (ENSXMAG00000001377) #11	nt5c2b (ENSXMAG00000029312) #12	CNNM2 (ENSXMAG00000000054) #13	as3mt (ENSXMAG00000000056) #14	wbp1lb (ENSXMAG00000000063) #15	ENSXMAG00000029703 #16	poll (ENSXMAG00000000075) #17	dpcd (ENSXMAG00000000098) #18	fgf8b (ENSXMAG00000021661) #19	slc2a15b (ENSXMAG00000000115) #20	lbx1b (ENSXMAG00000012488) #21	cenpk (ENSXMAG00000000139) #22	SMAP1 (ENSXMAG00000000144) #23	krt94 (ENSXMAG00000000155) #24	ENSXMAG00000023373 #25	ENSXMAG00000025322 #26	krt98 (ENSXMAG00000000157) #25	krt15 (ENSXMAG00000000173) #28	krt99 (ENSXMAG00000023618) #29	ENSXMAG00000000197 #31	ENSXMAG00000025286 #30	jupa (ENSXMAG00000000209) #32	ENSXMAG00000023553	ENSXMAG00000029713	KCNIP2 (ENSXMAG00000000215) #34	armh3 (ENSXMAG00000000219)	ldb1b (ENSXMAG00000027796)
NAME_4	ANCESTRAL SPECIES	28	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Mummichog	MODERN SPECIES	469														slc2a15b (ENSFHEG00000001625) #20	ENSFHEG00000001630 #21	cenpk (ENSFHEG00000001633) #22	ENSFHEG00000001638 #23	krt94 (ENSFHEG00000001649) #24	ENSFHEG00000001660 #25	ENSFHEG00000001698 #25	krt98 (ENSFHEG00000001721) #25	krt15 (ENSFHEG00000001728) #28	krt99 (ENSFHEG00000001737) #29	ENSFHEG00000001740 #30	ENSFHEG00000001760 #31	jupa (ENSFHEG00000001780) #32	ENSFHEG00000001788
Sheepshead minnow	MODERN SPECIES	422								CNNM2 (ENSCVAG00000018655) #13	as3mt (ENSCVAG00000018689) #14	wbp1lb (ENSCVAG00000018695) #15	poll (ENSCVAG00000018729) #17	dpcd (ENSCVAG00000018755) #18	fgf8b (ENSCVAG00000018762) #19	slc2a15b (ENSCVAG00000018773) #20	lbx1b (ENSCVAG00000018786) #21	cenpk (ENSCVAG00000018796) #22	SMAP1 (ENSCVAG00000018803) #23	krt94 (ENSCVAG00000019039) #24	ENSCVAG00000019084 #25	ENSCVAG00000000499 #25	krt98 (ENSCVAG00000019102) #25	krt15 (ENSCVAG00000019131) #28	krt99 (ENSCVAG00000019139) #29	ENSCVAG00000019152 #30	ENSCVAG00000019409 #31	jupa (ENSCVAG00000019461) #32	ENSCVAG00000019480 #34	armh3 (ENSCVAG00000019564)	ldb1b (ENSCVAG00000019587)	si:dkey-93h22.8 (ENSCVAG00000019596)	ENSCVAG00000019679
Oryzias	ANCESTRAL SPECIES	28	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.b ##25	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00940000158005	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b
Oryzias_b	ANCESTRAL SPECIES	25	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.b ##25	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00940000158005	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b
Javanese ricefish	MODERN SPECIES		rab40c (ENSOJAG00000020244)	ENSOJAG00000020252	CALHM1 (ENSOJAG00000020274)	zgc:175214 (ENSOJAG00000020287) #7	atp5md (ENSOJAG00000000058) #9	taf5 (ENSOJAG00000000065) #10	inab (ENSOJAG00000000103) #11	CNNM2 (ENSOJAG00000000181) #13	as3mt (ENSOJAG00000000202) #14	wbp1lb (ENSOJAG00000000223) #15	poll (ENSOJAG00000000244) #17	dpcd (ENSOJAG00000000263) #18	fgf8b (ENSOJAG00000000269) #19	slc2a15b (ENSOJAG00000000287) #20	lbx1b (ENSOJAG00000000302) #21	cenpk (ENSOJAG00000000304) #22	SMAP1 (ENSOJAG00000000318) #23	ENSOJAG00000000325	KRT19 (ENSOJAG00000000485) #24	krt98 (ENSOJAG00000000775) #25	ENSOJAG00000000812 ##25	krt99 (ENSOJAG00000000865) #29	ENSOJAG00000000871 #30	ENSOJAG00000000881 #31	jupa (ENSOJAG00000000979) #32	KCNIP2 (ENSOJAG00000001166) #34	armh3 (ENSOJAG00000001194)	tk2 (ENSOJAG00000001245)	ldb1b (ENSOJAG00000001294)	ENSOJAG00000001413	ENSOJAG00000001418
Indian medaka	MODERN SPECIES	35	CALHM1 (ENSOMEG00000010803)	zgc:175214 (ENSOMEG00000010830) #7	pdcd11 (ENSOMEG00000010904) #8	ENSOMEG00000010947 #8	atp5md (ENSOMEG00000010965) #9	taf5 (ENSOMEG00000011058) #10	inab (ENSOMEG00000011083) #11	nt5c2b (ENSOMEG00000011133) #12	CNNM2 (ENSOMEG00000011258) #13	wbp1lb (ENSOMEG00000011311) #15	poll (ENSOMEG00000011333) #17	dpcd (ENSOMEG00000011358) #18	fgf8b (ENSOMEG00000011400) #19	slc2a15b (ENSOMEG00000011443) #20	lbx1b (ENSOMEG00000011455) #21	cenpk (ENSOMEG00000011482) #22	SMAP1 (ENSOMEG00000011561) #23	krt94 (ENSOMEG00000011603) #24	krt98 (ENSOMEG00000011645) #25	ENSOMEG00000011684 ##25	krt99 (ENSOMEG00000011727) #29	ENSOMEG00000011746 #30	ENSOMEG00000011780 #31	jupa (ENSOMEG00000011864) #32	KCNIP2 (ENSOMEG00000011905) #34	armh3 (ENSOMEG00000011996)	tk2 (ENSOMEG00000012043)	ldb1b (ENSOMEG00000012071)	si:dkey-93h22.8 (ENSOMEG00000012140)	ENSOMEG00000012211	cant1b (ENSOMEG00000012241)
Oryzias_a	ANCESTRAL SPECIES	34	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000163289.b.a.a #12	ENSGT00940000154418.a.a.b #11	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.b ##25	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00940000158005	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b
Japanese Medaka HdrR	MODERN SPECIES		CALHM1 (ENSORLG00000013016)	zgc:175214 (ENSORLG00000026419) #7	pdcd11 (ENSORLG00000012995) #8	atp5md (ENSORLG00000024513) #9	taf5 (ENSORLG00000012986) #10	nt5c2b (ENSORLG00000012969) #12	inab (ENSORLG00000012931) #11	CNNM2 (ENSORLG00000012918) #13	as3mt (ENSORLG00000012900) #14	wbp1lb (ENSORLG00000024654) #15	poll (ENSORLG00000012875) #17	dpcd (ENSORLG00000027280) #18	fgf8b (ENSORLG00000012857) #19	slc2a15b (ENSORLG00000012848) #20	lbx1b (ENSORLG00000012711) #21	cenpk (ENSORLG00000012705) #22	SMAP1 (ENSORLG00000012694) #23	krt94 (ENSORLG00000012662) #24	krt98 (ENSORLG00000012646) #25	ENSORLG00000012618 ##25	krt99 (ENSORLG00000012569) #29	ENSORLG00000012551 #30	ENSORLG00000025102 #31	jupa (ENSORLG00000012542) #32	ENSORLG00000012486 #34	armh3 (ENSORLG00000012426)	tk2 (ENSORLG00000012380)	ldb1b (ENSORLG00000012373)	ENSORLG00000022645	ENSORLG00000028445	si:dkey-93h22.8 (ENSORLG00000012355)
Chinese medaka	MODERN SPECIES	305	CALHM1 (ENSOSIG00000015418)	zgc:175214 (ENSOSIG00000015419) #7	pdcd11 (ENSOSIG00000015423) #8	atp5md (ENSOSIG00000015431) #9	taf5 (ENSOSIG00000015439) #10	nt5c2b (ENSOSIG00000015706) #12	inab (ENSOSIG00000015976) #11	CNNM2 (ENSOSIG00000015977) #13	as3mt (ENSOSIG00000015978) #14	wbp1lb (ENSOSIG00000015980) #15	poll (ENSOSIG00000015983) #17	dpcd (ENSOSIG00000015989) #18	fgf8b (ENSOSIG00000015992) #19	slc2a15b (ENSOSIG00000016129) #20	lbx1b (ENSOSIG00000016142) #21	cenpk (ENSOSIG00000016144) #22	ENSOSIG00000016145 #23	krt94 (ENSOSIG00000016147) #24	krt98 (ENSOSIG00000016149) #25	ENSOSIG00000016151	ENSOSIG00000016154 ##25	ENSOSIG00000016157	ENSOSIG00000016159 #30	jupa (ENSOSIG00000016174) #32	KCNIP2 (ENSOSIG00000016202) #34	armh3 (ENSOSIG00000016208)	tk2 (ENSOSIG00000000108)	ldb1b (ENSOSIG00000000167)	ENSOSIG00000000210
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Cichlidae	ANCESTRAL SPECIES	3	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Nile tilapia	MODERN SPECIES	18	zp3c (ENSONIG00000036390)	pdcd11 (ENSONIG00000018835) #8	atp5md (ENSONIG00000032430) #9	taf5 (ENSONIG00000018833) #10	inab (ENSONIG00000029868) #11	nt5c2b (ENSONIG00000018829) #12	CNNM2 (ENSONIG00000018828) #13	as3mt (ENSONIG00000018826) #14	wbp1lb (ENSONIG00000028546) #15	poll (ENSONIG00000018822) #17	dpcd (ENSONIG00000018819) #18	ENSONIG00000035113	fgf8b (ENSONIG00000031278) #19	slc2a15b (ENSONIG00000018816) #20	lbx1b (ENSONIG00000036425) #21	cenpk (ENSONIG00000018814) #22	SMAP1 (ENSONIG00000018813) #23	krt94 (ENSONIG00000018807) #24	krt15 (ENSONIG00000037937) #28	krt99 (ENSONIG00000018806) #29	ENSONIG00000032121 #30	krt98 (ENSONIG00000018810) #25	ENSONIG00000018805 #31	jupa (ENSONIG00000018803) #32	KCNIP2 (ENSONIG00000018800) #34	armh3 (ENSONIG00000018799)	ldb1b (ENSONIG00000018797)	si:dkey-93h22.8 (ENSONIG00000033606)	ENSONIG00000018794	cant1b (ENSONIG00000018793)	afmid (ENSONIG00000018792)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Lyretail cichlid	MODERN SPECIES	308	ENSNBRG00000021543	CALHM1 (ENSNBRG00000021549)	zgc:175214 (ENSNBRG00000021568) #7	pdcd11 (ENSNBRG00000021596) #8	taf5 (ENSNBRG00000021737) #10	inab (ENSNBRG00000021780) #11	nt5c2b (ENSNBRG00000021814) #12	CNNM2 (ENSNBRG00000021863) #13	as3mt (ENSNBRG00000021942) #14	wbp1lb (ENSNBRG00000021999) #15	poll (ENSNBRG00000022014) #17	dpcd (ENSNBRG00000022033) #18	fgf8b (ENSNBRG00000022061) #19	slc2a15b (ENSNBRG00000022146) #20	lbx1b (ENSNBRG00000022180) #21	cenpk (ENSNBRG00000022205) #22	SMAP1 (ENSNBRG00000022222) #23	krt94 (ENSNBRG00000022244) #24	krt98 (ENSNBRG00000022456) #25	krt15 (ENSNBRG00000022980) #28	ENSNBRG00000022987 #30	ENSNBRG00000023010 #31	jupa (ENSNBRG00000023053) #32	armh3 (ENSNBRG00000023092)	ldb1b (ENSNBRG00000023119)	ENSNBRG00000023152	ENSNBRG00000023168	cant1b (ENSNBRG00000023191)	afmid (ENSNBRG00000023215)	tk1 (ENSNBRG00000023233)	syngr2b (ENSNBRG00000023245)
Haplochromini	ANCESTRAL SPECIES	3	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031.e.a #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Burton s mouthbrooder	MODERN SPECIES	337	CALHM1 (ENSHBUG00000020282)	zgc:175214 (ENSHBUG00000020259) #7	pdcd11 (ENSHBUG00000020226) #8	atp5md (ENSHBUG00000020211) #9	ENSHBUG00000020202 #10	inab (ENSHBUG00000020185) #11	nt5c2b (ENSHBUG00000020172) #12	CNNM2 (ENSHBUG00000020136) #13	as3mt (ENSHBUG00000020119) #14	wbp1lb (ENSHBUG00000020110) #15	poll (ENSHBUG00000020101) #17	dpcd (ENSHBUG00000020045) #18	fgf8b (ENSHBUG00000020004) #19	slc2a15b (ENSHBUG00000019972) #20	lbx1b (ENSHBUG00000019934) #21	cenpk (ENSHBUG00000019922) #22	SMAP1 (ENSHBUG00000019912) #23	krt94 (ENSHBUG00000019853) #24	krt98 (ENSHBUG00000019771) #25	krt15 (ENSHBUG00000019759) #28	ENSHBUG00000019747 #30	ENSHBUG00000000586 #31	jupa (ENSHBUG00000019714) #32	KCNIP2 (ENSHBUG00000019621) #34	armh3 (ENSHBUG00000019565)	ldb1b (ENSHBUG00000019378)	si:dkey-93h22.8 (ENSHBUG00000019347)	ENSHBUG00000019327	cant1b (ENSHBUG00000019276)	afmid (ENSHBUG00000019247)	tk1 (ENSHBUG00000019236)
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031.f #18	ENSGT00390000014031.e.a #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
P. nyererei	MODERN SPECIES	360	ENSPNYG00000004053	zgc:175214 (ENSPNYG00000004013) #7	pdcd11 (ENSPNYG00000003979) #8	atp5md (ENSPNYG00000003949) #9	taf5 (ENSPNYG00000003900) #10	inab (ENSPNYG00000003822) #11	nt5c2b (ENSPNYG00000003781) #12	CNNM2 (ENSPNYG00000003686) #13	as3mt (ENSPNYG00000003664) #14	wbp1lb (ENSPNYG00000003656) #15	poll (ENSPNYG00000003613) #17	dpcd (ENSPNYG00000003582) #18	fgf8b (ENSPNYG00000003504) #19	slc2a15b (ENSPNYG00000003459) #20	lbx1b (ENSPNYG00000003403) #21	cenpk (ENSPNYG00000003376) #22	SMAP1 (ENSPNYG00000003337) #23	krt94 (ENSPNYG00000003207) #24	krt98 (ENSPNYG00000003181) #25	krt15 (ENSPNYG00000003167) #28	krt99 (ENSPNYG00000003158) #29	ENSPNYG00000003128 #30	ENSPNYG00000002974 #31	jupa (ENSPNYG00000002908) #32	KCNIP2 (ENSPNYG00000002869) #34	armh3 (ENSPNYG00000002768)	ldb1b (ENSPNYG00000002704)	si:dkey-93h22.8 (ENSPNYG00000002682)	ENSPNYG00000002625	cant1b (ENSPNYG00000002587)	afmid (ENSPNYG00000002523)
Haplochromini_B	ANCESTRAL SPECIES	23	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031.f #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Zebra mbuna	MODERN SPECIES	1109	CALHM1 (ENSMZEG00005009017)	zgc:175214 (ENSMZEG00005008984) #7	pdcd11 (ENSMZEG00005008949) #8	atp5md (ENSMZEG00005008937) #9	taf5 (ENSMZEG00005008902) #10	inab (ENSMZEG00005008834) #11	nt5c2b (ENSMZEG00005008782) #12	CNNM2 (ENSMZEG00005008760) #13	as3mt (ENSMZEG00005008714) #14	wbp1lb (ENSMZEG00005008705) #15	poll (ENSMZEG00005008677) #17	dpcd (ENSMZEG00005008653) #18	fgf8b (ENSMZEG00005008642) #19	slc2a15b (ENSMZEG00005008607) #20	lbx1b (ENSMZEG00005008600) #21	cenpk (ENSMZEG00005008583) #22	SMAP1 (ENSMZEG00005008548) #23	krt94 (ENSMZEG00005008511) #24	krt98 (ENSMZEG00005008496) #25	krt15 (ENSMZEG00005008487) #28	krt99 (ENSMZEG00005008473) #29	ENSMZEG00005008461 #30	ENSMZEG00005008443 #31	jupa (ENSMZEG00005008391) #32	KCNIP2 (ENSMZEG00005008364) #34	armh3 (ENSMZEG00005008281)	ldb1b (ENSMZEG00005008245)	si:dkey-93h22.8 (ENSMZEG00005008228)	ENSMZEG00005008173	cant1b (ENSMZEG00005008140)	afmid (ENSMZEG00005008119)
Eastern happy	MODERN SPECIES	18	atp5md (ENSACLG00000018433) #9	taf5 (ENSACLG00000018443) #10	inab (ENSACLG00000018488) #11	nt5c2b (ENSACLG00000018558) #12	CNNM2 (ENSACLG00000018611) #13	CNNM2 (ENSACLG00000018650) #13	as3mt (ENSACLG00000018658) #14	wbp1lb (ENSACLG00000018676) #15	poll (ENSACLG00000018740) #17	dpcd (ENSACLG00000018774) #18	fgf8b (ENSACLG00000018794) #19	poll (ENSACLG00000018810) #17	dpcd (ENSACLG00000018832) #18	slc2a15b (ENSACLG00000018850) #20	lbx1b (ENSACLG00000018897) #21	cenpk (ENSACLG00000018904) #22	SMAP1 (ENSACLG00000018925) #23	ENSACLG00000018945	krt94 (ENSACLG00000018950) #24	krt98 (ENSACLG00000018967) #25	krt15 (ENSACLG00000018979) #28	krt99 (ENSACLG00000019002) #29	ENSACLG00000019032 #30	ENSACLG00000019016 #31	jupa (ENSACLG00000019071) #32	KCNIP2 (ENSACLG00000019119) #34	armh3 (ENSACLG00000019143)	ldb1b (ENSACLG00000019279)	si:dkey-93h22.8 (ENSACLG00000019359)	ENSACLG00000019393	cant1b (ENSACLG00000019543)
Midas cichlid	MODERN SPECIES	1113	zgc:175214 (ENSACIG00000006436) #7	ENSACIG00000006458 #8	ENSACIG00000006495	taf5 (ENSACIG00000006505) #10	inab (ENSACIG00000006532) #11	ENSACIG00000006583 ##12	nt5c2b (ENSACIG00000006589) #12	CNNM2 (ENSACIG00000006633) #13	as3mt (ENSACIG00000006747) #14	wbp1lb (ENSACIG00000006833) #15	poll (ENSACIG00000006868) #17	dpcd (ENSACIG00000006893) #18	fgf8b (ENSACIG00000006920) #19	slc2a15b (ENSACIG00000006971) #20	lbx1b (ENSACIG00000007010) #21	cenpk (ENSACIG00000007018) #22	smap1 (ENSACIG00000007041) ##23	krt94 (ENSACIG00000007065) #24	krt98 (ENSACIG00000007137) #25	krt15 (ENSACIG00000007504) #28	ENSACIG00000008017 #30	ENSACIG00000008033 #31	jupa (ENSACIG00000008093) #32	KCNIP2 (ENSACIG00000008119) #34	armh3 (ENSACIG00000008152)	ldb1b (ENSACIG00000008206)	ENSACIG00000008238	cant1b (ENSACIG00000008270)	afmid (ENSACIG00000008288)	tk1 (ENSACIG00000008324)	syngr2b (ENSACIG00000008502)
Pomacentridae	ANCESTRAL SPECIES	20	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Bicolor damselfish	MODERN SPECIES	816								CNNM2 (ENSSPAG00000018856) #13	as3mt (ENSSPAG00000018827) #14	wbp1lb (ENSSPAG00000018811) #15	poll (ENSSPAG00000018791) #17	dpcd (ENSSPAG00000018765) #18	fgf8b (ENSSPAG00000018697) #19	slc2a15b (ENSSPAG00000018661) #20	lbx1b (ENSSPAG00000018634) #21	cenpk (ENSSPAG00000018618) #22	SMAP1 (ENSSPAG00000018581) #23	krt94 (ENSSPAG00000018562) #24	krt98 (ENSSPAG00000018531) #25	krt15 (ENSSPAG00000018517) #28	krt99 (ENSSPAG00000018499) #29	ENSSPAG00000018493 #30	ENSSPAG00000018438 #31	jupa (ENSSPAG00000018367) #32	KCNIP2 (ENSSPAG00000018330) #34	ENSSPAG00000018321
Pomacentridae_A	ANCESTRAL SPECIES	13	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377 #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Amphiprion	ANCESTRAL SPECIES		ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000153342.a #10	ENSGT00940000166377 #9	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.a.a #21	ENSGT00390000006243 #22	ENSGT00940000155884.b #23	ENSGT00940000155258 #24	ENSGT00950000182969.B.c.a.a.a #25	ENSGT00950000182969.B.c.a.a.b.a.b #28	ENSGT00950000182969.B.c.b #29	ENSGT00400000024592 #30	ENSGT00940000162183 #31	ENSGT00940000156395.e #32	ENSGT00940000157798.b #34	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183137.a.l	ENSGT00390000007726.a.b	ENSGT00390000012872.b	ENSGT00390000011093
Clown anemonefish	MODERN SPECIES	657							uchl5 (ENSAOCG00000021853)	CNNM2 (ENSAOCG00000021810) #13	as3mt (ENSAOCG00000021795) #14	wbp1lb (ENSAOCG00000021744) #15	poll (ENSAOCG00000021729) #17	dpcd (ENSAOCG00000021699) #18	fgf8b (ENSAOCG00000021667) #19	slc2a15b (ENSAOCG00000021551) #20	lbx1b (ENSAOCG00000021517) #21	cenpk (ENSAOCG00000021512) #22	SMAP1 (ENSAOCG00000021487) #23	krt94 (ENSAOCG00000021442) #24	krt98 (ENSAOCG00000021421) #25	krt15 (ENSAOCG00000021398) #28	krt99 (ENSAOCG00000021386) #29	ENSAOCG00000021233 #30	ENSAOCG00000021350 #31	jupa (ENSAOCG00000021215) #32
Orange clownfish	MODERN SPECIES	17	CALHM1 (ENSAPEG00000020194)	zgc:175214 (ENSAPEG00000020209) #7	pdcd11 (ENSAPEG00000020240) #8	taf5 (ENSAPEG00000020262) #10	atp5md (ENSAPEG00000020309) #9	inab (ENSAPEG00000020332) #11	nt5c2b (ENSAPEG00000020408) #12	CNNM2 (ENSAPEG00000020499) #13	as3mt (ENSAPEG00000020598) #14	wbp1lb (ENSAPEG00000020616) #15	poll (ENSAPEG00000020633) #17	dpcd (ENSAPEG00000020676) #18	fgf8b (ENSAPEG00000020700) #19	slc2a15b (ENSAPEG00000020772) #20	lbx1b (ENSAPEG00000020806) #21	cenpk (ENSAPEG00000020835) #22	SMAP1 (ENSAPEG00000020861) #23	krt94 (ENSAPEG00000020916) #24	krt98 (ENSAPEG00000020925) #25	krt15 (ENSAPEG00000020944) #28	krt99 (ENSAPEG00000020988) #29	ENSAPEG00000021002 #30	ENSAPEG00000021076 #31	jupa (ENSAPEG00000021206) #32	KCNIP2 (ENSAPEG00000021263) #34	armh3 (ENSAPEG00000021305)	ENSAPEG00000021371	patl1 (ENSAPEG00000021391)	ENSAPEG00000021436	ENSAPEG00000021491	ENSAPEG00000021540
Spiny chromis	MODERN SPECIES	22	CALHM1 (ENSAPOG00000015693)	zgc:175214 (ENSAPOG00000015672) #7	pdcd11 (ENSAPOG00000015629) #8	atp5md (ENSAPOG00000015614) #9	taf5 (ENSAPOG00000015600) #10	inab (ENSAPOG00000015546) #11	nt5c2b (ENSAPOG00000015537) #12	CNNM2 (ENSAPOG00000015454) #13	as3mt (ENSAPOG00000015417) #14	wbp1lb (ENSAPOG00000015408) #15	poll (ENSAPOG00000015387) #17	dpcd (ENSAPOG00000015370) #18	fgf8b (ENSAPOG00000015344) #19	slc2a15b (ENSAPOG00000015325) #20	lbx1b (ENSAPOG00000015260) #21	cenpk (ENSAPOG00000015249) #22	SMAP1 (ENSAPOG00000015235) #23	krt94 (ENSAPOG00000015225) #24
Pinecone sodierfish	MODERN SPECIES		CALHM1 (ENSMMDG00005008179)	zgc:175214 (ENSMMDG00005008175) #7	pdcd11 (ENSMMDG00005008071) #8	atp5md (ENSMMDG00005008056) #9	taf5 (ENSMMDG00005008045) #10	inab (ENSMMDG00005007875) #11	nt5c2b (ENSMMDG00005007771) #12	CNNM2 (ENSMMDG00005007741) #13	as3mt (ENSMMDG00005007716) #14	wbp1lb (ENSMMDG00005007703) #15	poll (ENSMMDG00005007701) #17	dpcd (ENSMMDG00005007698) #18	fgf8b (ENSMMDG00005007695) #19	slc2a15b (ENSMMDG00005007691) #20	lbx1b (ENSMMDG00005007684) #21	cenpk (ENSMMDG00005007682) #22	SMAP1 (ENSMMDG00005007676) #23	krt94 (ENSMMDG00005007671) #24	krt98 (ENSMMDG00005007462) #25	krt15 (ENSMMDG00005007456) #28	krt99 (ENSMMDG00005007454) #29	ENSMMDG00005007443 #30	ENSMMDG00005007084 #31	jupa (ENSMMDG00005005176) #32	KCNIP2 (ENSMMDG00005004975) #34	armh3 (ENSMMDG00005004934)	ldb1b (ENSMMDG00005003141)	ENSMMDG00005003071	ENSMMDG00005003059	cant1b (ENSMMDG00005003053)	afmid (ENSMMDG00005003026)
Otomorpha	ANCESTRAL SPECIES	191	ENSGT00940000166025.b ##7	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377.f #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.b ##21	ENSGT00390000006243 #22	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT00950000183029.B.j.h	ENSGT00940000154866.B.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000153431.b	ENSGT00390000006916.c	ENSGT00940000156983.a.a.q	ENSGT00940000155103.a.b.ld	ENSGT00950000183059.b.a.b.r	ENSGT00940000155559.a.b
Clupeiformes	ANCESTRAL SPECIES	203	ENSGT01050000244827.D.b.b.b	ENSGT01030000234610.b.a.b.a	ENSGT00940000166025.a #7	ENSGT00390000012228 #8	ENSGT00940000166377.f #9	ENSGT00940000153342.a #10	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00390000006243 #22	ENSGT00940000155933.b.b	ENSGT00950000183029.B.i.a
Denticle herring	MODERN SPECIES	13	ITPRIP (ENSDCDG00000034311)	CALHM1 (ENSDCDG00000034310)	zgc:175214 (ENSDCDG00000034308) #7	pdcd11 (ENSDCDG00000034303) #8	atp5md (ENSDCDG00000034297) #9	taf5 (ENSDCDG00000034292) #10	inab (ENSDCDG00000034284) #11	nt5c2b (ENSDCDG00000034168) #12	CNNM2 (ENSDCDG00000034145) #13	as3mt (ENSDCDG00000034141) #14	wbp1lb (ENSDCDG00000034138) #15	poll (ENSDCDG00000034136) #17	dpcd (ENSDCDG00000034135) #18	fgf8b (ENSDCDG00000034133) #19	slc2a15b (ENSDCDG00000034132) #20	cenpk (ENSDCDG00000034131) #22	RIMS1 (ENSDCDG00000033416)	ENSDCDG00000033350	eef1a1b (ENSDCDG00000033347)	RIN2 (ENSDCDG00000033343)	SLC24A3 (ENSDCDG00000033338)	dtd1 (ENSDCDG00000033332)	sec23b (ENSDCDG00000032982)	ccdc85al (ENSDCDG00000032961)	bcl11ab (ENSDCDG00000032959)	ENSDCDG00000032958	ENSDCDG00000032953	ENSDCDG00000032951	ENSDCDG00000032944	ENSDCDG00000032941	thbs4b (ENSDCDG00000030442)
Atlantic herring	MODERN SPECIES	16	zgc:175214 (ENSCHAG00000006202) #7	pdcd11 (ENSCHAG00000005871) #8	atp5md (ENSCHAG00000005836) #9	taf5 (ENSCHAG00000005692) #10	inab (ENSCHAG00000005685) #11	nt5c2b (ENSCHAG00000002738) #12	CNNM2 (ENSCHAG00000014012) #13	as3mt (ENSCHAG00000013938) #14	wbp1lb (ENSCHAG00000013931) #15	poll (ENSCHAG00000013920) #17	dpcd (ENSCHAG00000013912) #18	fgf8b (ENSCHAG00000013783) #19	slc2a15b (ENSCHAG00000013573) #20	lbx1b (ENSCHAG00000013543) ##21	ENSCHAG00000013436	ENSCHAG00000013425 #22	ENSCHAG00000011087	ENSCHAG00000011039	RIMS1 (ENSCHAG00000008981)	ENSCHAG00000008569	EEF1A1 (ENSCHAG00000008431)	RIN2 (ENSCHAG00000008374)	SLC24A3 (ENSCHAG00000007732)	dtd1 (ENSCHAG00000007680)	sec23b (ENSCHAG00000007066)	ccdc85al (ENSCHAG00000007005)	bcl11ab (ENSCHAG00000006938)	ENSCHAG00000006921	ENSCHAG00000006908	ENSCHAG00000006837	ENSCHAG00000006808
Otophysi	ANCESTRAL SPECIES	201						ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.b ##21	ENSGT00390000006243 #22	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT00950000183029.B.j.h	ENSGT00950000183029.B.i.a	ENSGT00940000164127.b	ENSGT00940000155353.a.a.b	ENSGT00940000160127.h	ENSGT00940000157735	ENSGT00530000063106.C	ENSGT00390000013790	ENSGT00390000005954	ENSGT00390000001134.a.b	ENSGT01030000234518.C.a.b.a.b.b	ENSGT00950000182999.b.b	ENSGT00940000162528
Characiphysae	ANCESTRAL SPECIES	110	ENSGT00940000159832.n	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000165158.b	ENSGT00940000161153	ENSGT00440000033720.a.a.b	ENSGT00940000164095.b #20	ENSGT00940000159518.b #19	ENSGT00390000014031 #18	ENSGT00940000158515 #17	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00390000001742.a #14	ENSGT00940000159034 #13	ENSGT00940000163289.b.a.a #12	ENSGT00940000154418.a.a.b #11	ENSGT00390000006243 #22	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT00950000183029.B.i.a.a	ENSGT00940000164127.b	ENSGT00940000155353.a.a.b	ENSGT00940000160127.h	ENSGT00940000157735	ENSGT00530000063106.C	ENSGT00390000013790	ENSGT00390000005954	ENSGT00390000001134.a.b	ENSGT01030000234518.C.a.b.a.b.b	ENSGT00950000182999.b.b	ENSGT00950000183009.eb	ENSGT00940000162528
Characiphysae_b	ANCESTRAL SPECIES	49														ENSGT00940000160378.kb.b.a	ENSGT00390000014380.h.b.a.b.b	ENSGT00390000006243 #22	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT00950000183029.B.i.a.a	ENSGT00940000164127.b	ENSGT00940000155353.a.a.b	ENSGT00940000160127.h	ENSGT00940000157735	ENSGT00530000063106.C	ENSGT00390000013790	ENSGT00390000005954	ENSGT00390000001134.a.b	ENSGT01030000234518.C.a.b.a.b.b	ENSGT00950000182999.b.b	ENSGT00950000183009.eb	ENSGT00940000162528
Characoidei	ANCESTRAL SPECIES	179														ENSGT00940000160378.kb.b.a	ENSGT00390000014380.h.b.a.b.b.d	ENSGT00390000006243 #22	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT00950000183029.B.i.a.a	ENSGT00940000164127.b	ENSGT00940000155353.a.a.b	ENSGT00940000160127.h	ENSGT00940000157735	ENSGT00530000063106.C	ENSGT00390000013790	ENSGT00390000005954	ENSGT00390000001134.a.b	ENSGT00950000182999.b.b	ENSGT01030000234518.C.a.b.a.b.b	ENSGT00950000183009.eb	ENSGT00940000162528
Red-bellied piranha	MODERN SPECIES	440													ENSPNAG00000009423	ENSPNAG00000009512	lbx1b (ENSPNAG00000009553) ##21	cenpk (ENSPNAG00000009578) #22	RIMS1 (ENSPNAG00000009762)	ENSPNAG00000009866	eef1a1b (ENSPNAG00000009890)	ENSPNAG00000009941	itga6b (ENSPNAG00000010003)	dlx2b (ENSPNAG00000010022)
Mexicana tetra	MODERN SPECIES	3	rnf11a (ENSAMXG00000018505)	rad23aa (ENSAMXG00000003562)	ENSAMXG00000003579	dand5 (ENSAMXG00000030931)	junba (ENSAMXG00000025030)	ENSAMXG00000018995	rnaseh2a (ENSAMXG00000000436)	snrpb2 (ENSAMXG00000037263)	prokr1a (ENSAMXG00000000449)	fbxo48 (ENSAMXG00000031002)	BEST2 (ENSAMXG00000029576)	get3 (ENSAMXG00000000478)	ENSAMXG00000035498	ENSAMXG00000000481	lbx1b (ENSAMXG00000000484) ##21	cenpk (ENSAMXG00000042770) #22	RIMS1 (ENSAMXG00000000491)	ENSAMXG00000000507	eef1a1b (ENSAMXG00000020651)	ENSAMXG00000034633	itga6b (ENSAMXG00000000536)	dlx2b (ENSAMXG00000000552)	metap1d (ENSAMXG00000000558)	DIS3 (ENSAMXG00000000563)	bora (ENSAMXG00000000572)	mzt1 (ENSAMXG00000033399)	dachc (ENSAMXG00000040839)	ubac2 (ENSAMXG00000030024)	gpr183b (ENSAMXG00000025031)	TRA2B (ENSAMXG00000039469)	igf2bp2b (ENSAMXG00000032347)
Electric eel	MODERN SPECIES	8	dpcd (ENSEEEG00000013408) #18	poll (ENSEEEG00000013410) #17	wbp1lb (ENSEEEG00000013411) #15	as3mt (ENSEEEG00000013414) #14	CNNM2 (ENSEEEG00000013418) #13	nt5c2b (ENSEEEG00000013421) #12	inab (ENSEEEG00000013453) #11	ENSEEEG00000013455	ENSEEEG00000013457	ENSEEEG00000013458	ENSEEEG00000013461	ENSEEEG00000013465	ENSEEEG00000013534	ENSEEEG00000013535	lbx1b (ENSEEEG00000013536) ##21	cenpk (ENSEEEG00000013537) #22	RIMS1 (ENSEEEG00000013538)	ENSEEEG00000013540
Channel catfish	MODERN SPECIES	18	ENSIPUG00000022753	ENSIPUG00000022748	slc2a15b (ENSIPUG00000022730) #20	fgf8b (ENSIPUG00000022725) #19	dpcd (ENSIPUG00000022713) #18	poll (ENSIPUG00000022704) #17	wbp1lb (ENSIPUG00000022700) #15	ENSIPUG00000022695	as3mt (ENSIPUG00000022683) #14	CNNM2 (ENSIPUG00000022677) #13	nt5c2b (ENSIPUG00000022637) #12	ina (ENSIPUG00000022635) #11	ENSIPUG00000022629	ENSIPUG00000022620	lbx1b (ENSIPUG00000022616) ##21	cenpk (ENSIPUG00000022610) #22	RIMS1 (ENSIPUG00000022460)	ENSIPUG00000022429	eef1a1b (ENSIPUG00000022421)	ENSIPUG00000022396	itga6b (ENSIPUG00000022343)	dlx2b (ENSIPUG00000022337)	metap1d (ENSIPUG00000022323)	dis3 (ENSIPUG00000022296)	bora (ENSIPUG00000022284)	mzt1 (ENSIPUG00000022271)	DACH1 (ENSIPUG00000022234)	gpr183b (ENSIPUG00000022230)	UBAC2 (ENSIPUG00000022213)	TRA2B (ENSIPUG00000022183)	Igf2bp2 (ENSIPUG00000022106)
Cyprinoidei	ANCESTRAL SPECIES	22	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000165158.b	ENSGT00940000162022	ENSGT00940000161153	ENSGT00440000033720.a.a.b	ENSGT00940000154418.a.a.b #11	ENSGT00940000163289.b.a.a #12	ENSGT00940000159034 #13	ENSGT00390000001742.a #14	ENSGT00950000183109.c.a.a.a.b #15	ENSGT00940000158515 #17	ENSGT00390000014031 #18	ENSGT00940000159518.b #19	ENSGT00940000164095.b #20	ENSGT00390000006243 #22	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT00950000183029.B.j.h	ENSGT00950000183029.B.i.a	ENSGT00940000164127.b	ENSGT00940000155353.a.a.b	ENSGT00940000160127.h	ENSGT00940000157735	ENSGT00530000063106.C	ENSGT00390000013790	ENSGT00390000005954	ENSGT00390000001134.a.b	ENSGT01030000234518.C.a.b.a.b.b	ENSGT00950000182999.b.b	ENSGT00940000162528
Cyprininae	ANCESTRAL SPECIES	364														ENSGT00940000164095.b #20	ENSGT00940000164611.b.l.b ##21	ENSGT00390000006243 #22	ENSGT00940000155134.z.a	ENSGT00940000155933.b.b.a	ENSGT00950000183029.B.i.a	ENSGT00940000164127.b.b	ENSGT00940000155353.a.a.b.a	ENSGT00940000160127.h.a	ENSGT00940000157735.b	ENSGT00530000063106.C.n	ENSGT00390000013790.d	ENSGT00390000005954.ob	ENSGT00390000001134.a.b.b	ENSGT01030000234518.C.a.b.a.b.b.b	ENSGT00950000182999.b.b.d	ENSGT00940000154913.cb.a	ENSGT00940000162528.j
Goldfish	MODERN SPECIES	18	ENSCARG00000015282	STS (ENSCARG00000015218)	anos1a (ENSCARG00000015038)	inab (ENSCARG00000015024) #11	ENSCARG00000015019	nt5c2b (ENSCARG00000014795) #12	CNNM2 (ENSCARG00000014756) #13	as3mt (ENSCARG00000014687) #14	ENSCARG00000014673	wbp1lb (ENSCARG00000014665) #15	poll (ENSCARG00000014649) #17	dpcd (ENSCARG00000014642) #18	fgf8b (ENSCARG00000014627) #19	slc2a15b (ENSCARG00000014504) #20	lbx1b (ENSCARG00000014488) ##21	cenpk (ENSCARG00000014485) #22	RIMS1 (ENSCARG00000013343)	ENSCARG00000013212	ENSCARG00000013196	eef1a1b (ENSCARG00000013192)	ENSCARG00000013154	itga6b (ENSCARG00000010972)	dlx2b (ENSCARG00000010852)	metap1d (ENSCARG00000010489)	DIS3 (ENSCARG00000010336)	bora (ENSCARG00000010286)	mzt1 (ENSCARG00000010269)	dachc (ENSCARG00000010228)	gpr183b (ENSCARG00000010213)	ubac2 (ENSCARG00000010203)	igf2bp2b (ENSCARG00000010180)
Cyprininae_a	ANCESTRAL SPECIES	256		ENSGT00940000156607.a.a.kb.a	ENSGT01060000249735	ENSGT00940000161153.k	ENSGT00440000033720.a.a.b.b	ENSGT00940000154418.a.a.b.e #11	ENSGT00940000163289.b.a.a.b #12	ENSGT00940000159034.jb.a #13	ENSGT00390000001742.a.h #14	ENSGT00950000183109.c.a.a.a.b.c #15	ENSGT00940000158515 #17	ENSGT00390000014031.c #18	ENSGT00940000159518.b.b #19	ENSGT00940000164095.b #20	ENSGT00940000164611.b.l.b ##21	ENSGT00390000006243 #22	ENSGT00940000155134.z.a	ENSGT00940000155933.b.b.a	ENSGT00950000183029.B.i.a	ENSGT00940000164127.b.b	ENSGT00940000155353.a.a.b.a	ENSGT00940000160127.h.a	ENSGT00940000157735.b	ENSGT00530000063106.C.n	ENSGT00390000013790.d	ENSGT00390000005954.ob	ENSGT00390000001134.a.b.b	ENSGT01030000234518.C.a.b.a.b.b.b	ENSGT00950000182999.b.b.d	ENSGT00940000154913.cb.a	ENSGT00940000162528.j
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	27	ENSCCRG00000069305	ENSCCRG00000016112	ENSCCRG00000059369	anos1a (ENSCCRG00000012925)	inab (ENSCCRG00000012948) #11	nt5c2b (ENSCCRG00000030371) #12	ENSCCRG00000068233	ENSCCRG00000047640 #13	as3mt (ENSCCRG00000068214) #14	wbp1lb (ENSCCRG00000082236) #15	dpcd (ENSCCRG00000036244) #18	poll (ENSCCRG00000075739) #17	fgf8b (ENSCCRG00000036243) #19	slc2a15b (ENSCCRG00000032469) #20	lbx1b (ENSCCRG00000012953) ##21	cenpk (ENSCCRG00000079032) #22	ENSCCRG00000074168	ENSCCRG00000060865	eef1a1b (ENSCCRG00000068272)	ENSCCRG00000025690	itga6b (ENSCCRG00000023620)	dlx2b (ENSCCRG00000015420)	metap1d (ENSCCRG00000067438)	ENSCCRG00000082299	mzt1 (ENSCCRG00000054748)	bora (ENSCCRG00000030093)	dachc (ENSCCRG00000032347)	gpr183b (ENSCCRG00000063264)	ubac2 (ENSCCRG00000019907)	tmem41ab (ENSCCRG00000067879)	si:dkey-22o12.2 (ENSCCRG00000058112)
Common carp reference	MODERN SPECIES	22	ENSCCRG00000055986	ENSCCRG00000076414	nlgn4xa (ENSCCRG00000032014)	ENSCCRG00000055867	pudp (ENSCCRG00000037755)	ENSCCRG00000066787	anos1a (ENSCCRG00000033788)	inab (ENSCCRG00000002487) #11	nt5c2b (ENSCCRG00000058145) #12	ENSCCRG00000002508 #13	ENSCCRG00000064278	wbp1lb (ENSCCRG00000002551) #15	dpcd (ENSCCRG00000000422) #18	fgf8b (ENSCCRG00000073156) #19	lbx1b (ENSCCRG00000000446) ##21	cenpk (ENSCCRG00000077695) #22	ENSCCRG00000012958	ENSCCRG00000070376	ENSCCRG00000077062	eef1a1b (ENSCCRG00000032645)	ENSCCRG00000079997	itga6b (ENSCCRG00000016674)	dlx2b (ENSCCRG00000062845)	metap1d (ENSCCRG00000054582)	DIS3 (ENSCCRG00000053402)	bora (ENSCCRG00000036868)	mzt1 (ENSCCRG00000075782)	dachc (ENSCCRG00000080120)	gpr183b (ENSCCRG00000032361)	ubac2 (ENSCCRG00000032357)	igf2bp2b (ENSCCRG00000032364)
Golden-line barbel	MODERN SPECIES	333	ENSSGRG00000034989	STS (ENSSGRG00000034986)	anos1a (ENSSGRG00000034985)	inab (ENSSGRG00000034984) #11	nt5c2b (ENSSGRG00000033166) #12	CNNM2 (ENSSGRG00000033152) #13	as3mt (ENSSGRG00000033150) #14	wbp1lb (ENSSGRG00000033149) #15	ENSSGRG00000033147	poll (ENSSGRG00000033146) #17	poll (ENSSGRG00000033145) #17	dpcd (ENSSGRG00000033144) #18	fgf8b (ENSSGRG00000033143) #19	slc2a15b (ENSSGRG00000033142) #20	lbx1b (ENSSGRG00000033141) ##21	cenpk (ENSSGRG00000033140) #22	RIMS1 (ENSSGRG00000033037)	ENSSGRG00000033034	eef1a1b (ENSSGRG00000032231)	itga6b (ENSSGRG00000031995)	dlx2b (ENSSGRG00000031975)	ENSSGRG00000031974	metap1d (ENSSGRG00000031888)	bora (ENSSGRG00000031883)	mzt1 (ENSSGRG00000031881)	dachc (ENSSGRG00000031874)
Zebrafish	MODERN SPECIES		pudp (ENSDARG00000027826)	pnpla4 (ENSDARG00000069834)	STS (ENSDARG00000053241)	ENSDARG00000100996	anos1a (ENSDARG00000012896)	inab (ENSDARG00000053248) #11	nt5c2b (ENSDARG00000058231) #12	CNNM2 (ENSDARG00000078733) #13	as3mt (ENSDARG00000027572) #14	wbp1lb (ENSDARG00000029751) #15	poll (ENSDARG00000039613) #17	dpcd (ENSDARG00000060501) #18	fgf8b (ENSDARG00000039615) #19	slc2a15b (ENSDARG00000053269) #20	lbx1b (ENSDARG00000018611) ##21	cenpk (ENSDARG00000039616) #22	ENSDARG00000078902	ENSDARG00000069953	eef1a1b (ENSDARG00000069951)	ENSDARG00000074575	itga6b (ENSDARG00000069946)	dlx2b (ENSDARG00000017174)	metap1d (ENSDARG00000019715)	DIS3 (ENSDARG00000060559)	bora (ENSDARG00000042688)	mzt1 (ENSDARG00000096668)	dachc (ENSDARG00000003142)	gpr183b (ENSDARG00000074302)	ubac2 (ENSDARG00000093065)	igf2bp2b (ENSDARG00000099758)	tmem41ab (ENSDARG00000026771)
Spotted gar	MODERN SPECIES	654	prim2 (ENSLOCG00000017003)	khdrbs2 (ENSLOCG00000017016)	ENSLOCG00000017017	lgsn (ENSLOCG00000017019)	ptp4a1 (ENSLOCG00000017023)	PHF3 (ENSLOCG00000017027)	ENSLOCG00000017039	ENSLOCG00000017043	ENSLOCG00000017044	zgc:171579 (ENSLOCG00000017369)	ADGRB3 (ENSLOCG00000017045)	lmbrd1 (ENSLOCG00000017055)	COL19A1 (ENSLOCG00000017062)	col9a1b (ENSLOCG00000017076)	fam135a (ENSLOCG00000017093)	cenpk (ENSLOCG00000017098) #22	SDHAF4 (ENSLOCG00000017100)	smap1 (ENSLOCG00000017101) #23	b3gat2 (ENSLOCG00000017110)	OGFRL1 (ENSLOCG00000017116)
Reedfish	MODERN SPECIES	6	ENSECRG00000013518	cdc42ep3 (ENSECRG00000013630)	NLRC4 (ENSECRG00000013648)	opn3 (ENSECRG00000013668)	kmo (ENSECRG00000013707)	fh (ENSECRG00000013816)	rgs7a (ENSECRG00000013965)	grem2b (ENSECRG00000014180)	FMN2 (ENSECRG00000014226)	CHRM3 (ENSECRG00000014350)	ENSECRG00000014380	RYR2 (ENSECRG00000014765)	mtr (ENSECRG00000016740)	ENSECRG00000016791	fam135a (ENSECRG00000016823)	ENSECRG00000016915 #22	SDHAF4 (ENSECRG00000016940)	smap1 (ENSECRG00000016957) #23	b3gat2 (ENSECRG00000016981)	OGFRL1 (ENSECRG00000016996)	asrgl1 (ENSECRG00000017024)	RIMS1 (ENSECRG00000017153)	ENSECRG00000017435	ENSECRG00000017473	KCNQ5 (ENSECRG00000017518)	ddx43 (ENSECRG00000017694)	CGAS (ENSECRG00000017882)	eef1a1a (ENSECRG00000017895)	SLC17A5 (ENSECRG00000017914)	RIN2 (ENSECRG00000017944)	SLC24A3 (ENSECRG00000017986)