Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000160504	ENSGT00910000144211.n.a.fb #7	ENSGT00390000002428.a.g.a #8	ENSGT00490000043398 #9	ENSGT00940000156197 #10	ENSGT00940000158000 #11	ENSGT00940000158484 #12	ENSGT00440000035378.c #13	ENSGT01060000248564.a.b #14	ENSGT00990000204354	ENSGT00530000063881.a.b #16	ENSGT00940000154450 #17	ENSGT00940000158669 #19	ENSGT00940000161366 #20	ENSGT00510000048978 #21	ENSGT00940000157970 #22	ENSGT00390000011598 #23	ENSGT00940000158233 #24	ENSGT00940000159501 #25	ENSGT00390000004116 #26	ENSGT00730000111080.b #27	ENSGT00940000155017 #28	ENSGT00940000156598 #29	ENSGT00390000017845 #30	ENSGT00730000111390 #31	ENSGT00940000157715 #32	ENSGT00950000182844.a.b #33	ENSGT00390000016613.c #34	ENSGT00940000157118.c.a #35	ENSGT00940000159312 #36	ENSGT00390000005972 #37
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00940000160504	ENSGT00910000144211.n.a.fb #7	ENSGT00390000002428.a.g.a #8	ENSGT00490000043398 #9	ENSGT00940000156197 #10	ENSGT00940000158000 #11	ENSGT00940000158484 #12	ENSGT00440000035378.c #13	ENSGT01060000248564.a.b #14	ENSGT00990000204354	ENSGT00530000063881.a.b #16	ENSGT00940000154450 #17	ENSGT00940000158669 #19	ENSGT00940000161366 #20	ENSGT00510000048978 #21	ENSGT00940000157970 #22	ENSGT00390000011598 #23	ENSGT00940000158233 #24	ENSGT00940000159501 #25	ENSGT00390000004116 #26	ENSGT00730000111080.b #27	ENSGT00940000155017.w.a #28	ENSGT00940000156598 #29	ENSGT00390000017845 #30	ENSGT00730000111390 #31	ENSGT00940000157715 #32	ENSGT00950000182844.a.b #33	ENSGT00390000016613.c #34	ENSGT00940000157118.c.a #35	ENSGT00940000159312 #36	ENSGT00390000005972 #37
Eurasian red squirrel	MODERN SPECIES		RPL11 (ENSSVLG00005000344) #7	ELOA (ENSSVLG00005000381) #8	PITHD1 (ENSSVLG00005000416) #9	LYPLA2 (ENSSVLG00005000457) #10	GALE (ENSSVLG00005000509) #11	HMGCL (ENSSVLG00005000529) #12	FUCA1 (ENSSVLG00005000561) #13	CNR2 (ENSSVLG00005000589) #14	ENSSVLG00005000604 #15	PNRC2 (ENSSVLG00005000620) #16	SRSF10 (ENSSVLG00005000670) #17	ENSSVLG00005000730 #18	MYOM3 (ENSSVLG00005000787) #19	IL22RA1 (ENSSVLG00005000877) #20	IFNLR1 (ENSSVLG00005000894) #21	GRHL3 (ENSSVLG00005000932) #22	STPG1 (ENSSVLG00005001000) #23	NIPAL3 (ENSSVLG00005001037) #24	RCAN3 (ENSSVLG00005001080) #25	NCMAP (ENSSVLG00005001114) #26	SRRM1 (ENSSVLG00005001180) #27	ENSSVLG00005001230 #28	RUNX3 (ENSSVLG00005001263) #29	SYF2 (ENSSVLG00005001292) #30	RSRP1 (ENSSVLG00005001313) #31	TMEM50A (ENSSVLG00005001335) #32	ENSSVLG00005001369 #33	MACO1 (ENSSVLG00005001436) #34	LDLRAP1 (ENSSVLG00005001468) #35	MAN1C1 (ENSSVLG00005001513) #36	ENSSVLG00005001587 #37
Marmotini	ANCESTRAL SPECIES		ENSGT00940000160504	ENSGT00910000144211.n.a.fb #7	ENSGT00390000002428.a.g.a #8	ENSGT00490000043398 #9	ENSGT00940000156197 #10	ENSGT00940000158000 #11	ENSGT00940000158484 #12	ENSGT00440000035378.c #13	ENSGT01060000248564.a.b #14	ENSGT00990000204354	ENSGT00530000063881.a.b #16	ENSGT00940000154450 #17	ENSGT00940000158669 #19	ENSGT00940000161366 #20	ENSGT00510000048978 #21	ENSGT00940000157970 #22	ENSGT00390000011598 #23	ENSGT00940000158233 #24	ENSGT00940000159501 #25	ENSGT00390000004116 #26	ENSGT00730000111080.b #27	ENSGT00940000155017.w.a.a #28	ENSGT00940000156598 #29	ENSGT00390000017845 #30	ENSGT00730000111390 #31	ENSGT00940000157715 #32	ENSGT00950000182844.a.b #33	ENSGT00390000016613.c #34	ENSGT00940000157118.c.a #35	ENSGT00940000159312 #36	ENSGT00390000005972 #37
Alpin marmot	MODERN SPECIES	15	ID3 (ENSMMMG00000018787)	RPL11 (ENSMMMG00000018781) #7	ELOA (ENSMMMG00000018774) #8	PITHD1 (ENSMMMG00000018765) #9	LYPLA2 (ENSMMMG00000018761) #10	GALE (ENSMMMG00000018757) #11	HMGCL (ENSMMMG00000018659) #12	FUCA1 (ENSMMMG00000018637) #13	CNR2 (ENSMMMG00000018629) #14	ENSMMMG00000018624	PNRC2 (ENSMMMG00000018622) #16	SRSF10 (ENSMMMG00000018592) #17	MYOM3 (ENSMMMG00000018557) #19	IL22RA1 (ENSMMMG00000018545) #20	IFNLR1 (ENSMMMG00000018513) #21	GRHL3 (ENSMMMG00000018480) #22	STPG1 (ENSMMMG00000018472) #23	NIPAL3 (ENSMMMG00000018457) #24	RCAN3 (ENSMMMG00000018455) #25	NCMAP (ENSMMMG00000018395) #26	SRRM1 (ENSMMMG00000018360) #27	CLIC4 (ENSMMMG00000018318) #28	ENSMMMG00000018312	ENSMMMG00000018294 #29	SYF2 (ENSMMMG00000018261) #30	RSRP1 (ENSMMMG00000018254) #31	TMEM50A (ENSMMMG00000018240) #32	ENSMMMG00000015263 #33	MACO1 (ENSMMMG00000015231) #34	LDLRAP1 (ENSMMMG00000015218) #35	MAN1C1 (ENSMMMG00000014472) #36
Marmotini_b	ANCESTRAL SPECIES		ENSGT00940000160504	ENSGT00910000144211.n.a.fb #7	ENSGT00390000002428.a.g.a #8	ENSGT00490000043398 #9	ENSGT00940000156197 #10	ENSGT00940000158000 #11	ENSGT00940000158484 #12	ENSGT00440000035378.c #13	ENSGT01060000248564.a.b #14	ENSGT00990000204354	ENSGT00530000063881.a.b #16	ENSGT00940000154450 #17	ENSGT00940000158669 #19	ENSGT00940000161366 #20	ENSGT00510000048978 #21	ENSGT00940000157970 #22	ENSGT00390000011598 #23	ENSGT00940000158233 #24	ENSGT00940000159501 #25	ENSGT00390000004116 #26	ENSGT00730000111080.b #27	ENSGT00940000155017.w.a.a #28	ENSGT00940000156598 #29	ENSGT00390000017845 #30	ENSGT00730000111390 #31	ENSGT00940000157715 #32	ENSGT00950000182844.a.b #33	ENSGT00390000016613.c #34	ENSGT00940000157118.c.a #35	ENSGT00940000159312 #36	ENSGT00390000005972 #37
Arctic ground squirrel	MODERN SPECIES	294	ID3 (ENSUPAG00010020971)	RPL11 (ENSUPAG00010020974) #7	ELOA (ENSUPAG00010020981) #8	PITHD1 (ENSUPAG00010020991) #9	LYPLA2 (ENSUPAG00010021003) #10	GALE (ENSUPAG00010021009) #11	HMGCL (ENSUPAG00010021020) #12	FUCA1 (ENSUPAG00010021031) #13	CNR2 (ENSUPAG00010021037) #14	ENSUPAG00010021041	PNRC2 (ENSUPAG00010021043) #16	SRSF10 (ENSUPAG00010021046) #17	MYOM3 (ENSUPAG00010021069) #19	IL22RA1 (ENSUPAG00010021107) #20	IFNLR1 (ENSUPAG00010021115) #21	GRHL3 (ENSUPAG00010021122) #22	STPG1 (ENSUPAG00010021132) #23	NIPAL3 (ENSUPAG00010021144) #24	RCAN3 (ENSUPAG00010021151) #25	NCMAP (ENSUPAG00010021159) #26	ENSUPAG00010021164
Squirrel	MODERN SPECIES	74	E2F2 (ENSSTOG00000009576)	ID3 (ENSSTOG00000009584)	ENSSTOG00000011904	ELOA (ENSSTOG00000023412) #8	PITHD1 (ENSSTOG00000028000) #9	LYPLA2 (ENSSTOG00000011918) #10	GALE (ENSSTOG00000011927) #11	HMGCL (ENSSTOG00000011933) #12	FUCA1 (ENSSTOG00000011938) #13	CNR2 (ENSSTOG00000011946) #14	PNRC2 (ENSSTOG00000000953) #16	SRSF10 (ENSSTOG00000000956) #17	MYOM3 (ENSSTOG00000000934) #19	IL22RA1 (ENSSTOG00000001510) #20	IFNLR1 (ENSSTOG00000022523) #21	GRHL3 (ENSSTOG00000023529) #22	STPG1 (ENSSTOG00000020596) #23	NIPAL3 (ENSSTOG00000002868) #24	RCAN3 (ENSSTOG00000002884) #25	NCMAP (ENSSTOG00000014647) #26	SRRM1 (ENSSTOG00000014640) #27	ENSSTOG00000002184 #28	RUNX3 (ENSSTOG00000022471) #29	SYF2 (ENSSTOG00000023984) #30	TMEM50A (ENSSTOG00000022246) #32	ENSSTOG00000013643 #33	MACO1 (ENSSTOG00000013650) #34	LDLRAP1 (ENSSTOG00000019764) #35	ENSSTOG00000034000 #36	SELENON (ENSSTOG00000032252) #37	MTFR1L (ENSSTOG00000023300)
Hystricomorpha	ANCESTRAL SPECIES	4	ENSGT00940000160992	ENSGT00940000160504	ENSGT00910000144211.n.a.fb #7	ENSGT00390000002428.a.g.a #8	ENSGT00490000043398 #9	ENSGT00940000156197 #10	ENSGT00940000158000 #11	ENSGT00940000158484 #12	ENSGT00440000035378.c #13	ENSGT01060000248564.a.b #14	ENSGT00530000063881.a.b #16	ENSGT00940000154450.lc #17	ENSGT00940000158669 #19	ENSGT00940000161366 #20	ENSGT00510000048978 #21	ENSGT00940000157970 #22	ENSGT00390000011598 #23	ENSGT00940000158233 #24	ENSGT00940000159501 #25	ENSGT00390000004116 #26	ENSGT00730000111080.b.m.a #27	ENSGT00940000155017 #28	ENSGT00940000156598 #29	ENSGT00390000017845 #30	ENSGT00730000111390 #31	ENSGT00940000157715 #32	ENSGT00950000182844.a.b #33	ENSGT00390000016613.c #34	ENSGT00940000157118.c.a #35	ENSGT00940000159312 #36	ENSGT00390000005972 #37
Hystricomorpha_a	ANCESTRAL SPECIES	1	ENSGT00940000160992	ENSGT00940000160504	ENSGT00910000144211.n.a.fb #7	ENSGT00390000002428.a.g.a #8	ENSGT00490000043398 #9	ENSGT00940000156197 #10	ENSGT00940000158000 #11	ENSGT00940000158484 #12	ENSGT00440000035378.c #13	ENSGT01060000248564.a.b #14	ENSGT00530000063881.a.b #16	ENSGT00940000154450.lc #17	ENSGT00940000158669 #19	ENSGT00940000161366 #20	ENSGT00510000048978 #21	ENSGT00940000157970 #22	ENSGT00390000011598 #23	ENSGT00940000158233 #24	ENSGT00940000159501 #25	ENSGT00390000004116 #26	ENSGT00730000111080.b.m.a #27	ENSGT00940000155017 #28	ENSGT00940000156598 #29	ENSGT00390000017845 #30	ENSGT00730000111390 #31	ENSGT00940000157715 #32	ENSGT00950000182844.a.b #33	ENSGT00390000016613.c #34	ENSGT00940000157118.c.a #35	ENSGT00940000159312 #36	ENSGT00390000005972 #37
Hystricomorpha_b	ANCESTRAL SPECIES	7	ENSGT00940000160992	ENSGT00940000160504	ENSGT00910000144211.n.a.fb #7	ENSGT00390000002428.a.g.a #8	ENSGT00490000043398 #9	ENSGT00940000156197 #10	ENSGT00940000158000 #11	ENSGT00940000158484 #12	ENSGT00440000035378.c #13	ENSGT01060000248564.a.b #14	ENSGT00530000063881.a.b #16	ENSGT00940000154450.lc #17	ENSGT00940000158669 #19	ENSGT00940000161366 #20	ENSGT00510000048978 #21	ENSGT00940000157970 #22	ENSGT00390000011598 #23	ENSGT00940000158233 #24	ENSGT00940000159501 #25	ENSGT00390000004116 #26	ENSGT00730000111080.b.m.a #27	ENSGT00940000155017 #28	ENSGT00940000156598 #29	ENSGT00390000017845 #30	ENSGT00730000111390 #31	ENSGT00940000157715 #32	ENSGT00950000182844.a.b #33	ENSGT00390000016613.c #34	ENSGT00940000157118.c.a #35	ENSGT00940000159312 #36	ENSGT00390000005972 #37
Long-tailed chinchilla	MODERN SPECIES	159	E2F2 (ENSCLAG00000013943)	ID3 (ENSCLAG00000011715)	Rpl11 (ENSCLAG00000012453) #7	ELOA (ENSCLAG00000009140) #8	PITHD1 (ENSCLAG00000010044) #9	LYPLA2 (ENSCLAG00000010904) #10	GALE (ENSCLAG00000011611) #11	HMGCL (ENSCLAG00000013961) #12	FUCA1 (ENSCLAG00000013057) #13	CNR2 (ENSCLAG00000014048) #14	ENSCLAG00000014105 #16	ENSCLAG00000015555 #17	MYOM3 (ENSCLAG00000014590) #19	IL22RA1 (ENSCLAG00000014220) #20	IFNLR1 (ENSCLAG00000011350) #21	GRHL3 (ENSCLAG00000011858) #22	STPG1 (ENSCLAG00000010905) #23	NIPAL3 (ENSCLAG00000008287) #24	RCAN3 (ENSCLAG00000008751) #25	NCMAP (ENSCLAG00000009955) #26	SRRM1 (ENSCLAG00000014592) #27	CLIC4 (ENSCLAG00000007919) #28	RUNX3 (ENSCLAG00000010119) #29	SYF2 (ENSCLAG00000008474) #30	ENSCLAG00000008988 #31	ENSCLAG00000009626 #32	ENSCLAG00000010154 #33	MACO1 (ENSCLAG00000010148) #34	LDLRAP1 (ENSCLAG00000013635) #35	MAN1C1 (ENSCLAG00000013310) #36	SELENON (ENSCLAG00000009093) #37
Degu	MODERN SPECIES	133	E2F2 (ENSODEG00000014064)	ID3 (ENSODEG00000014895)	RPL11 (ENSODEG00000014876) #7	ENSODEG00000014098	ENSODEG00000014473 #8	PITHD1 (ENSODEG00000015391) #9	ENSODEG00000014635 #10	GALE (ENSODEG00000015082) #11	HMGCL (ENSODEG00000014361) #12	FUCA1 (ENSODEG00000013698) #13	CNR2 (ENSODEG00000014788) #14	ENSODEG00000020207	MYOM3 (ENSODEG00000014259) #19	IL22RA1 (ENSODEG00000015339) #20	IFNLR1 (ENSODEG00000014258) #21	GRHL3 (ENSODEG00000014148) #22	STPG1 (ENSODEG00000014432) #23	NIPAL3 (ENSODEG00000015480) #24	RCAN3 (ENSODEG00000014403) #25	NCMAP (ENSODEG00000014196) #26	ENSODEG00000013381 #27	ENSODEG00000014994	CLIC4 (ENSODEG00000015014) #28	RUNX3 (ENSODEG00000013557) #29	ENSODEG00000020175	ENSODEG00000014338 #30	RSRP1 (ENSODEG00000014609) #31	ENSODEG00000014039 #32	ENSODEG00000013632 #33	MACO1 (ENSODEG00000014747) #34	LDLRAP1 (ENSODEG00000013216) #35
Guinea pig	MODERN SPECIES	25	E2F2 (ENSCPOG00000008746)	ID3 (ENSCPOG00000038307)	RPL11 (ENSCPOG00000008432) #7	ELOA (ENSCPOG00000008632) #8	PITHD1 (ENSCPOG00000008637) #9	LYPLA2 (ENSCPOG00000033750) #10	GALE (ENSCPOG00000031845) #11	HMGCL (ENSCPOG00000008645) #12	FUCA1 (ENSCPOG00000003535) #13	CNR2 (ENSCPOG00000003537) #14	PNRC2 (ENSCPOG00000037509) #16	SRSF10 (ENSCPOG00000034102) #17	MYOM3 (ENSCPOG00000008018) #19	IL22RA1 (ENSCPOG00000024764) #20	IFNLR1 (ENSCPOG00000034175) #21	GRHL3 (ENSCPOG00000008841) #22	STPG1 (ENSCPOG00000008857) #23	NIPAL3 (ENSCPOG00000032188) #24	RCAN3 (ENSCPOG00000003363) #25	NCMAP (ENSCPOG00000037048) #26	SRRM1 (ENSCPOG00000015594) #27	CLIC4 (ENSCPOG00000038478) #28	RUNX3 (ENSCPOG00000038589) #29	SYF2 (ENSCPOG00000005326) #30	RSRP1 (ENSCPOG00000014651) #31	TMEM50A (ENSCPOG00000033045) #32	ENSCPOG00000020328 #33	MACO1 (ENSCPOG00000012618) #34	LDLRAP1 (ENSCPOG00000038658) #35	MAN1C1 (ENSCPOG00000012627) #36	SELENON (ENSCPOG00000030792) #37
Naked mole-rat female	MODERN SPECIES	26	ENSHGLG00000048939	ELOA (ENSHGLG00000010726) #8	PITHD1 (ENSHGLG00000011193) #9	LYPLA2 (ENSHGLG00000011699) #10	GALE (ENSHGLG00000014688) #11	HMGCL (ENSHGLG00000015186) #12	FUCA1 (ENSHGLG00000011473) #13	CNR2 (ENSHGLG00000042644) #14	PNRC2 (ENSHGLG00000044854) #16	SRSF10 (ENSHGLG00000046721) #17	ENSHGLG00000033166	MYOM3 (ENSHGLG00000012080) #19	IL22RA1 (ENSHGLG00000013047) #20	IFNLR1 (ENSHGLG00000048210) #21	ENSHGLG00000032213	GRHL3 (ENSHGLG00000012928) #22	STPG1 (ENSHGLG00000009919) #23	NIPAL3 (ENSHGLG00000047881) #24	RCAN3 (ENSHGLG00000010305) #25	ENSHGLG00000045032 #26	ENSHGLG00000037226	ENSHGLG00000017105 #27	ENSHGLG00000050374 #28	RUNX3 (ENSHGLG00000043838) #29	ENSHGLG00000045581	SYF2 (ENSHGLG00000044606) #30	TMEM50A (ENSHGLG00000017064) #32	ENSHGLG00000010472 #33	MACO1 (ENSHGLG00000010882) #34	LDLRAP1 (ENSHGLG00000012177) #35	MAN1C1 (ENSHGLG00000043962) #36