Rodentia_A	ANCESTRAL SPECIES	6	ENSGT00940000156252	ENSGT01030000234613.a.b	ENSGT00390000004417.b	ENSGT00510000049353 #7	ENSGT00940000158063 #8	ENSGT00420000029943 #9	ENSGT00390000002016 #10	ENSGT00940000162243 #11	ENSGT00940000153528.a.b.a.a #12	ENSGT00390000018132.j #13	ENSGT00940000162924 #14	ENSGT00940000155200 #15	ENSGT00940000164375 #17	ENSGT00940000153793 #20	ENSGT00390000017697.b #21	ENSGT00940000159836 #22	ENSGT00940000161650 #23	ENSGT00940000160687 #24	ENSGT00940000159757 #26	ENSGT00550000074901 #27	ENSGT00390000005075 #28	ENSGT00390000008295.a #29	ENSGT00940000159573 #30	ENSGT00940000160432 #31	ENSGT00940000163203	ENSGT00940000162264 #32	ENSGT00940000158005 #33	ENSGT00390000003283 #34	ENSGT00980000202834	ENSGT00940000160587 #35	ENSGT00940000153691.a.a #37
Hystricomorpha	ANCESTRAL SPECIES	22	ENSGT00940000156252	ENSGT01030000234613.a.b	ENSGT00390000004417.b	ENSGT00510000049353 #7	ENSGT00940000158063 #8	ENSGT00420000029943 #9	ENSGT00390000002016 #10	ENSGT00940000162243 #11	ENSGT00940000153528.a.b.a.a #12	ENSGT00390000018132.j #13	ENSGT00940000162924 #14	ENSGT00940000155200 #15	ENSGT00940000153793.j.a #16	ENSGT00940000153793.i.a #20	ENSGT00390000017697.b #21	ENSGT00940000159836 #22	ENSGT00940000161650 #23	ENSGT00940000160687 #24	ENSGT00940000159757 #26	ENSGT00550000074901 #27	ENSGT00390000005075 #28	ENSGT00390000008295.a #29	ENSGT00940000159573 #30	ENSGT00940000160432 #31	ENSGT00940000162264 #32	ENSGT00940000158005 #33	ENSGT00390000003283 #34	ENSGT00940000160587 #35	ENSGT00940000153691.a.a #37	ENSGT00940000153691.a.b ##37	ENSGT00950000183082.a
Hystricomorpha_a	ANCESTRAL SPECIES	22	ENSGT00940000156252	ENSGT01030000234613.a.b	ENSGT00390000004417.b	ENSGT00510000049353 #7	ENSGT00940000158063 #8	ENSGT00420000029943 #9	ENSGT00390000002016 #10	ENSGT00940000162243 #11	ENSGT00940000153528.a.b.a.a #12	ENSGT00390000018132.j #13	ENSGT00940000162924 #14	ENSGT00940000155200 #15	ENSGT00940000153793.j.a #16	ENSGT00940000153793.i.a #20	ENSGT00390000017697.b #21	ENSGT00940000159836 #22	ENSGT00940000161650 #23	ENSGT00940000160687 #24	ENSGT00940000159757 #26	ENSGT00550000074901 #27	ENSGT00390000005075 #28	ENSGT00390000008295.a #29	ENSGT00940000159573 #30	ENSGT00940000160432 #31	ENSGT00940000162264 #32	ENSGT00940000158005 #33	ENSGT00390000003283 #34	ENSGT00940000160587 #35	ENSGT00940000153691.a.a #37	ENSGT00940000153691.a.b ##37	ENSGT00950000183082.a
Guinea pig	MODERN SPECIES	22	ENSCPOG00000004946 #7	HSF4 (ENSCPOG00000010834) #8	FBXL8 (ENSCPOG00000010832) #9	TRADD (ENSCPOG00000010831) #10	B3GNT9 (ENSCPOG00000026402) #11	PHAF1 (ENSCPOG00000010828) #12	ENSCPOG00000010825 #13	CES4A (ENSCPOG00000005603) #14	CES3 (ENSCPOG00000033893) #15	ENSCPOG00000039038 #16	ENSCPOG00000034227 #17	ENSCPOG00000005610 #18	ENSCPOG00000034407 #19	ENSCPOG00000034731 #20	CIAO2B (ENSCPOG00000007431) #21	RRAD (ENSCPOG00000025211) #22	CDH16 (ENSCPOG00000021245) #23	PDP2 (ENSCPOG00000009661) #24	ENSCPOG00000033546 #25	CA7 (ENSCPOG00000024957) #26	NAE1 (ENSCPOG00000020116) #27	TERB1 (ENSCPOG00000015414) #28	DYNC1LI2 (ENSCPOG00000015409) #29	CMTM4 (ENSCPOG00000015406) #30	ENSCPOG00000015404 #31	CKLF (ENSCPOG00000040504) #32	TK2 (ENSCPOG00000006736) #33	BEAN1 (ENSCPOG00000036515) #34	CDH5 (ENSCPOG00000037748) #35	ENSCPOG00000040767 #36	ENSCPOG00000036927 #37
Hystricomorpha_b	ANCESTRAL SPECIES	15	ENSGT00390000004417.b	ENSGT00510000049353 #7	ENSGT00940000158063 #8	ENSGT00420000029943 #9	ENSGT00390000002016 #10	ENSGT00940000162243 #11	ENSGT00940000153528.a.b.a.a #12	ENSGT00390000018132.j #13	ENSGT00940000162924 #14	ENSGT00940000155200 #15	ENSGT00940000153793.j.a #16	ENSGT00940000164375 #17	ENSGT00940000153793.i.b.c #19	ENSGT00940000153793.i.a #20	ENSGT00390000017697.b #21	ENSGT00940000159836 #22	ENSGT00940000161650 #23	ENSGT00940000160687 #24	ENSGT00940000159757 #26	ENSGT00550000074901 #27	ENSGT00390000005075 #28	ENSGT00390000008295.a #29	ENSGT00940000159573 #30	ENSGT00940000160432 #31	ENSGT00940000162264 #32	ENSGT00940000158005 #33	ENSGT00390000003283 #34	ENSGT00940000160587 #35	ENSGT00940000153691.a.a #37	ENSGT00940000153691.a.b ##37	ENSGT00950000183082.a
Long-tailed chinchilla	MODERN SPECIES	140													ENSCLAG00000006303 #21	ENSCLAG00000005701 #21	ENSCLAG00000005375 #21	RRAD (ENSCLAG00000005281) #22	CDH16 (ENSCLAG00000009522) #23	PDP2 (ENSCLAG00000010280) #24	CA7 (ENSCLAG00000009866) #26	NAE1 (ENSCLAG00000008427) #27	TERB1 (ENSCLAG00000007580) #28	DYNC1LI2 (ENSCLAG00000006461) #29	CMTM4 (ENSCLAG00000006181) #30	CMTM3 (ENSCLAG00000005520) #31	ENSCLAG00000005405	CKLF (ENSCLAG00000008088) #32	TK2 (ENSCLAG00000008240) #33	BEAN1 (ENSCLAG00000008190) #34	CDH5 (ENSCLAG00000012589) #35	CDH11 (ENSCLAG00000016732) #37	CDH8 (ENSCLAG00000007676) ##37
Degu	MODERN SPECIES	52	FBXL8 (ENSODEG00000016675) #9	TRADD (ENSODEG00000016273) #10	B3GNT9 (ENSODEG00000015783) #11	PHAF1 (ENSODEG00000015277) #12	CBFB (ENSODEG00000016515) #13	CES4A (ENSODEG00000015763) #14	CES3 (ENSODEG00000016302) #15	ENSODEG00000015656 #16	ENSODEG00000016121 #17	ENSODEG00000017576 #19	ENSODEG00000015554 ##20	ENSODEG00000016915 #20	ENSODEG00000016345	ENSODEG00000016240 #20	ENSODEG00000015617 #21	RRAD (ENSODEG00000015827) #22	CDH16 (ENSODEG00000016010) #23	PDP2 (ENSODEG00000020328) #24	CA7 (ENSODEG00000015891) #26	ENSODEG00000016176 #27	TERB1 (ENSODEG00000017438) #28	ENSODEG00000016281 #29	CMTM4 (ENSODEG00000015905) #30	CMTM3 (ENSODEG00000016359) #31	CKLF (ENSODEG00000016474) #32	TK2 (ENSODEG00000016329) #33	BEAN1 (ENSODEG00000016084) #34	CDH5 (ENSODEG00000015848) #35	CDH11 (ENSODEG00000016523) #37	ENSODEG00000016848	ENSODEG00000016592
Naked mole-rat female	MODERN SPECIES	26	CENPN (ENSHGLG00000050859)	ATMIN (ENSHGLG00000014861)	C16orf46 (ENSHGLG00000034703)	GCSH (ENSHGLG00000044660)	ENSHGLG00000038072	BCO1 (ENSHGLG00000017639)	GAN (ENSHGLG00000018670)	CMIP (ENSHGLG00000009888)	PLCG2 (ENSHGLG00000014242)	SDR42E1 (ENSHGLG00000010816)	ENSHGLG00000038316	MPHOSPH6 (ENSHGLG00000019140)	ENSHGLG00000045793	ENSHGLG00000018583 #20	CIAO2B (ENSHGLG00000043672) #21	RRAD (ENSHGLG00000016885) #22	CDH16 (ENSHGLG00000019376) #23	PDP2 (ENSHGLG00000039814) #24	CA7 (ENSHGLG00000016917) #26	NAE1 (ENSHGLG00000018813) #27	TERB1 (ENSHGLG00000019160) #28	ENSHGLG00000017579 #29	CMTM4 (ENSHGLG00000010963) #30	CMTM3 (ENSHGLG00000011197) #31	ENSHGLG00000012002 #32	TK2 (ENSHGLG00000032022) #33	ENSHGLG00000045630	BEAN1 (ENSHGLG00000045590) #34	ENSHGLG00000013876 #35	ENSHGLG00000017123	ENSHGLG00000017133 #37
Sciuridae	ANCESTRAL SPECIES	5	ENSGT01030000234613.a.b	ENSGT00390000004417.b	ENSGT00510000049353 #7	ENSGT00940000158063 #8	ENSGT00420000029943 #9	ENSGT00390000002016 #10	ENSGT00940000162243 #11	ENSGT00940000153528.a.b.a.a #12	ENSGT00390000018132.j #13	ENSGT00940000162924 #14	ENSGT00940000155200 #15	ENSGT00940000164375 #17	ENSGT00940000153793.k #20	ENSGT00940000153793.l #20	ENSGT00390000017697.b #21	ENSGT00940000159836 #22	ENSGT00940000161650 #23	ENSGT00940000160687 #24	ENSGT00940000159757 #26	ENSGT00550000074901 #27	ENSGT00390000005075 #28	ENSGT00390000008295.a #29	ENSGT00940000159573 #30	ENSGT00940000160432 #31	ENSGT00940000163203	ENSGT00940000162264 #32	ENSGT00940000158005 #33	ENSGT00390000003283 #34	ENSGT00980000202834	ENSGT00940000160587 #35	ENSGT00940000153691.a.a #37
Marmotini	ANCESTRAL SPECIES	17	ENSGT00390000004417.b	ENSGT00510000049353 #7	ENSGT00940000158063 #8	ENSGT00420000029943 #9	ENSGT00390000002016 #10	ENSGT00940000162243 #11	ENSGT00940000153528.a.b.a.a #12	ENSGT00390000018132.j #13	ENSGT00940000162924 #14	ENSGT00940000155200 #15	ENSGT00940000164375.a #17	ENSGT00940000153793.k.a.a.a.b #20	ENSGT00940000153793.k.a.a.b.a #20	ENSGT00940000153793.l #20	ENSGT00390000017697.b #21	ENSGT00940000159836 #22	ENSGT00940000161650 #23	ENSGT00940000160687 #24	ENSGT00940000159757 #26	ENSGT00550000074901 #27	ENSGT00390000005075 #28	ENSGT00390000008295.a #29	ENSGT00940000159573 #30	ENSGT00940000160432 #31	ENSGT00940000163203	ENSGT00940000162264 #32	ENSGT00940000158005 #33	ENSGT00390000003283 #34	ENSGT00940000160587 #35	ENSGT00940000153691.a.a #37	ENSGT00940000153691.a.b ##37
Marmotini_b	ANCESTRAL SPECIES	7	ENSGT00940000158063 #8	ENSGT00420000029943 #9	ENSGT00390000002016 #10	ENSGT00940000162243 #11	ENSGT00940000153528.a.b.a.a #12	ENSGT00390000018132.j #13	ENSGT00940000162924 #14	ENSGT00940000155200 #15	ENSGT00940000164375.a #17	ENSGT00940000153793.k.a.a.a.b #20	ENSGT00940000153793.k.a.a.b.a #20	ENSGT00940000153793.k.a.a.a.a.a.a #20	ENSGT00940000153793.k.a.a.a.a.a.b #20	ENSGT00940000164375.b #17	ENSGT00390000017697.b #21	ENSGT00940000159836 #22	ENSGT00940000161650 #23	ENSGT00940000160687 #24	ENSGT00940000159757 #26	ENSGT00550000074901 #27	ENSGT00390000005075 #28	ENSGT00390000008295.a #29	ENSGT00940000159573 #30	ENSGT00940000160432 #31	ENSGT00940000163203	ENSGT00940000162264 #32	ENSGT00940000158005 #33	ENSGT00390000003283 #34	ENSGT00940000160587 #35	ENSGT00940000153691.a.a #37	ENSGT00940000153691.a.b ##37
Arctic ground squirrel	MODERN SPECIES	105															CIAO2B (ENSUPAG00010021302) #21	RRAD (ENSUPAG00010021305) #22	CDH16 (ENSUPAG00010021315) #23	PDP2 (ENSUPAG00010021334) #24	CA7 (ENSUPAG00010021336) #26	NAE1 (ENSUPAG00010021346) #27	TERB1 (ENSUPAG00010021363) #28	DYNC1LI2 (ENSUPAG00010021388) #29	CMTM4 (ENSUPAG00010021404) #30	CMTM3 (ENSUPAG00010021411) #31	ENSUPAG00010021429	CKLF (ENSUPAG00010021432) #32	TK2 (ENSUPAG00010021435) #33	ENSUPAG00010021443	BEAN1 (ENSUPAG00010021449) #34	CDH5 (ENSUPAG00010021462) #35	CDH11 (ENSUPAG00010021471) #37
Squirrel	MODERN SPECIES	75	TRADD (ENSSTOG00000011360) #10	B3GNT9 (ENSSTOG00000028759) #11	PHAF1 (ENSSTOG00000011346) #12	CBFB (ENSSTOG00000011344) #13	CES4A (ENSSTOG00000011337) #14	CES3 (ENSSTOG00000012032) #15	ENSSTOG00000025164 #17	ENSSTOG00000026289 #20	ENSSTOG00000027386 #20	ENSSTOG00000022937 #20	ENSSTOG00000025757 #20	ENSSTOG00000024931 #20	ENSSTOG00000019872 #20	ENSSTOG00000028587 #17	CIAO2B (ENSSTOG00000007870) #21	RRAD (ENSSTOG00000007859) #22	ENSSTOG00000007823 #23	ENSSTOG00000031778	ENSSTOG00000029943 #23	PDP2 (ENSSTOG00000007817) #24	CA7 (ENSSTOG00000021436) #26	NAE1 (ENSSTOG00000029230) #27	TERB1 (ENSSTOG00000007763) #28	DYNC1LI2 (ENSSTOG00000007750) #29	CMTM4 (ENSSTOG00000007736) #30	CMTM3 (ENSSTOG00000026680) #31	CKLF (ENSSTOG00000007682) #32	TK2 (ENSSTOG00000029024) #33	BEAN1 (ENSSTOG00000027189) #34	CDH5 (ENSSTOG00000006256) #35	CDH11 (ENSSTOG00000011815) #37
Eurasian red squirrel	MODERN SPECIES	8	MATCAP1 (ENSSVLG00005024362)	ENSSVLG00005024414 #7	HSF4 (ENSSVLG00005024450) #8	FBXL8 (ENSSVLG00005024480) #9	TRADD (ENSSVLG00005024499) #10	B3GNT9 (ENSSVLG00005024534) #11	PHAF1 (ENSSVLG00005024553) #12	CBFB (ENSSVLG00005024570) #13	ENSSVLG00005024618	CES4A (ENSSVLG00005024667) #14	CES3 (ENSSVLG00005024805) #15	ENSSVLG00005025098 #17	ENSSVLG00005025347 #20	ENSSVLG00005025467 #20	CIAO2B (ENSSVLG00005025484) #21	RRAD (ENSSVLG00005025495) #22	CDH16 (ENSSVLG00005025529) #23	PDP2 (ENSSVLG00005025571) #24	CA7 (ENSSVLG00005025581) #26	NAE1 (ENSSVLG00005025610) #27	TERB1 (ENSSVLG00005025637) #28	DYNC1LI2 (ENSSVLG00005025665) #29	CMTM4 (ENSSVLG00005025679) #30	CMTM3 (ENSSVLG00005025691) #31	ENSSVLG00005025706	CKLF (ENSSVLG00005025721) #32	TK2 (ENSSVLG00005025748) #33	BEAN1 (ENSSVLG00005016934) #34	ENSSVLG00005016998	CDH5 (ENSSVLG00005017067) #35	CDH11 (ENSSVLG00005017448) #37