Rodentia_A	ANCESTRAL SPECIES	6	ENSGT00940000156252	ENSGT01030000234613.a.b	ENSGT00390000004417.b	ENSGT00510000049353	ENSGT00940000158063	ENSGT00420000029943	ENSGT00390000002016	ENSGT00940000162243	ENSGT00940000153528.a.b.a.a	ENSGT00390000018132.j	ENSGT00940000162924	ENSGT00940000155200	ENSGT00940000164375	ENSGT00940000153793	ENSGT00390000017697.b #19	ENSGT00940000159836 #22	ENSGT00940000161650 #23	ENSGT00940000160687 #24	ENSGT00940000159757 #25	ENSGT00550000074901 #26	ENSGT00390000005075 #27	ENSGT00390000008295.a #28	ENSGT00940000159573 #29	ENSGT00940000160432 #30	ENSGT00940000163203	ENSGT00940000162264 #32	ENSGT00940000158005 #33	ENSGT00390000003283 #34	ENSGT00980000202834	ENSGT00940000160587 #35	ENSGT00940000153691.a.a #36
Hystricomorpha	ANCESTRAL SPECIES	22	ENSGT00940000156252	ENSGT01030000234613.a.b	ENSGT00390000004417.b	ENSGT00510000049353	ENSGT00940000158063	ENSGT00420000029943	ENSGT00390000002016	ENSGT00940000162243	ENSGT00940000153528.a.b.a.a	ENSGT00390000018132.j	ENSGT00940000162924	ENSGT00940000155200	ENSGT00940000153793.j.a	ENSGT00940000153793.i.a	ENSGT00390000017697.b #19	ENSGT00940000159836 #22	ENSGT00940000161650 #23	ENSGT00940000160687 #24	ENSGT00940000159757 #25	ENSGT00550000074901 #26	ENSGT00390000005075 #27	ENSGT00390000008295.a #28	ENSGT00940000159573 #29	ENSGT00940000160432 #30	ENSGT00940000162264 #32	ENSGT00940000158005 #33	ENSGT00390000003283 #34	ENSGT00940000160587 #35	ENSGT00940000153691.a.a #36	ENSGT00940000153691.a.b #37	ENSGT00950000183082.a
Hystricomorpha_a	ANCESTRAL SPECIES	22	ENSGT00940000156252	ENSGT01030000234613.a.b	ENSGT00390000004417.b	ENSGT00510000049353	ENSGT00940000158063	ENSGT00420000029943	ENSGT00390000002016	ENSGT00940000162243	ENSGT00940000153528.a.b.a.a	ENSGT00390000018132.j	ENSGT00940000162924	ENSGT00940000155200	ENSGT00940000153793.j.a	ENSGT00940000153793.i.a	ENSGT00390000017697.b #19	ENSGT00940000159836 #22	ENSGT00940000161650 #23	ENSGT00940000160687 #24	ENSGT00940000159757 #25	ENSGT00550000074901 #26	ENSGT00390000005075 #27	ENSGT00390000008295.a #28	ENSGT00940000159573 #29	ENSGT00940000160432 #30	ENSGT00940000162264 #32	ENSGT00940000158005 #33	ENSGT00390000003283 #34	ENSGT00940000160587 #35	ENSGT00940000153691.a.a #36	ENSGT00940000153691.a.b #37	ENSGT00950000183082.a
Hystricomorpha_b	ANCESTRAL SPECIES	15	ENSGT00390000004417.b	ENSGT00510000049353	ENSGT00940000158063	ENSGT00420000029943	ENSGT00390000002016	ENSGT00940000162243	ENSGT00940000153528.a.b.a.a	ENSGT00390000018132.j	ENSGT00940000162924	ENSGT00940000155200	ENSGT00940000153793.j.a	ENSGT00940000164375	ENSGT00940000153793.i.b.c	ENSGT00940000153793.i.a	ENSGT00390000017697.b #19	ENSGT00940000159836 #22	ENSGT00940000161650 #23	ENSGT00940000160687 #24	ENSGT00940000159757 #25	ENSGT00550000074901 #26	ENSGT00390000005075 #27	ENSGT00390000008295.a #28	ENSGT00940000159573 #29	ENSGT00940000160432 #30	ENSGT00940000162264 #32	ENSGT00940000158005 #33	ENSGT00390000003283 #34	ENSGT00940000160587 #35	ENSGT00940000153691.a.a #36	ENSGT00940000153691.a.b #37	ENSGT00950000183082.a
Long-tailed chinchilla	MODERN SPECIES	140													ENSCLAG00000006303 #19	ENSCLAG00000005701 #20	ENSCLAG00000005375 #21	RRAD (ENSCLAG00000005281) #22	CDH16 (ENSCLAG00000009522) #23	PDP2 (ENSCLAG00000010280) #24	CA7 (ENSCLAG00000009866) #25	NAE1 (ENSCLAG00000008427) #26	TERB1 (ENSCLAG00000007580) #27	DYNC1LI2 (ENSCLAG00000006461) #28	CMTM4 (ENSCLAG00000006181) #29	CMTM3 (ENSCLAG00000005520) #30	ENSCLAG00000005405 #31	CKLF (ENSCLAG00000008088) #32	TK2 (ENSCLAG00000008240) #33	BEAN1 (ENSCLAG00000008190) #34	CDH5 (ENSCLAG00000012589) #35	CDH11 (ENSCLAG00000016732) #36	CDH8 (ENSCLAG00000007676) #37
Degu	MODERN SPECIES	52	FBXL8 (ENSODEG00000016675)	TRADD (ENSODEG00000016273)	B3GNT9 (ENSODEG00000015783)	PHAF1 (ENSODEG00000015277)	CBFB (ENSODEG00000016515)	CES4A (ENSODEG00000015763)	CES3 (ENSODEG00000016302)	ENSODEG00000015656	ENSODEG00000016121	ENSODEG00000017576	ENSODEG00000015554	ENSODEG00000016915	ENSODEG00000016345	ENSODEG00000016240	ENSODEG00000015617 #19	RRAD (ENSODEG00000015827) #22	CDH16 (ENSODEG00000016010) #23	PDP2 (ENSODEG00000020328) #24	CA7 (ENSODEG00000015891) #25	ENSODEG00000016176 #26	TERB1 (ENSODEG00000017438) #27	ENSODEG00000016281 #28	CMTM4 (ENSODEG00000015905) #29	CMTM3 (ENSODEG00000016359) #30	CKLF (ENSODEG00000016474) #32	TK2 (ENSODEG00000016329) #33	BEAN1 (ENSODEG00000016084) #34	CDH5 (ENSODEG00000015848) #35	CDH11 (ENSODEG00000016523) #36	ENSODEG00000016848	ENSODEG00000016592
Guinea pig	MODERN SPECIES	22	ENSCPOG00000004946	HSF4 (ENSCPOG00000010834)	FBXL8 (ENSCPOG00000010832)	TRADD (ENSCPOG00000010831)	B3GNT9 (ENSCPOG00000026402)	PHAF1 (ENSCPOG00000010828)	ENSCPOG00000010825	CES4A (ENSCPOG00000005603)	CES3 (ENSCPOG00000033893)	ENSCPOG00000039038	ENSCPOG00000034227	ENSCPOG00000005610	ENSCPOG00000034407	ENSCPOG00000034731	CIAO2B (ENSCPOG00000007431) #19	RRAD (ENSCPOG00000025211) #22	CDH16 (ENSCPOG00000021245) #23	PDP2 (ENSCPOG00000009661) #24	ENSCPOG00000033546	CA7 (ENSCPOG00000024957) #25	NAE1 (ENSCPOG00000020116) #26	TERB1 (ENSCPOG00000015414) #27	DYNC1LI2 (ENSCPOG00000015409) #28	CMTM4 (ENSCPOG00000015406) #29	ENSCPOG00000015404 #30	CKLF (ENSCPOG00000040504) #32	TK2 (ENSCPOG00000006736) #33	BEAN1 (ENSCPOG00000036515) #34	CDH5 (ENSCPOG00000037748) #35	ENSCPOG00000040767 #36	ENSCPOG00000036927 #36
Naked mole-rat female	MODERN SPECIES	26	CENPN (ENSHGLG00000050859)	ATMIN (ENSHGLG00000014861)	C16orf46 (ENSHGLG00000034703)	GCSH (ENSHGLG00000044660)	ENSHGLG00000038072	BCO1 (ENSHGLG00000017639)	GAN (ENSHGLG00000018670)	CMIP (ENSHGLG00000009888)	PLCG2 (ENSHGLG00000014242)	SDR42E1 (ENSHGLG00000010816)	ENSHGLG00000038316	MPHOSPH6 (ENSHGLG00000019140)	ENSHGLG00000045793	ENSHGLG00000018583	CIAO2B (ENSHGLG00000043672) #19	RRAD (ENSHGLG00000016885) #22	CDH16 (ENSHGLG00000019376) #23	PDP2 (ENSHGLG00000039814) #24	CA7 (ENSHGLG00000016917) #25	NAE1 (ENSHGLG00000018813) #26	TERB1 (ENSHGLG00000019160) #27	ENSHGLG00000017579 #28	CMTM4 (ENSHGLG00000010963) #29	CMTM3 (ENSHGLG00000011197) #30	ENSHGLG00000012002 #32	TK2 (ENSHGLG00000032022) #33	ENSHGLG00000045630	BEAN1 (ENSHGLG00000045590) #34	ENSHGLG00000013876 #35	ENSHGLG00000017123	ENSHGLG00000017133 #36
Sciuridae	ANCESTRAL SPECIES	5	ENSGT01030000234613.a.b	ENSGT00390000004417.b	ENSGT00510000049353	ENSGT00940000158063	ENSGT00420000029943	ENSGT00390000002016	ENSGT00940000162243	ENSGT00940000153528.a.b.a.a	ENSGT00390000018132.j	ENSGT00940000162924	ENSGT00940000155200	ENSGT00940000164375	ENSGT00940000153793.k	ENSGT00940000153793.l	ENSGT00390000017697.b #19	ENSGT00940000159836 #22	ENSGT00940000161650 #23	ENSGT00940000160687 #24	ENSGT00940000159757 #25	ENSGT00550000074901 #26	ENSGT00390000005075 #27	ENSGT00390000008295.a #28	ENSGT00940000159573 #29	ENSGT00940000160432 #30	ENSGT00940000163203	ENSGT00940000162264 #32	ENSGT00940000158005 #33	ENSGT00390000003283 #34	ENSGT00980000202834	ENSGT00940000160587 #35	ENSGT00940000153691.a.a #36
Marmotini	ANCESTRAL SPECIES	17	ENSGT00390000004417.b	ENSGT00510000049353	ENSGT00940000158063	ENSGT00420000029943	ENSGT00390000002016	ENSGT00940000162243	ENSGT00940000153528.a.b.a.a	ENSGT00390000018132.j	ENSGT00940000162924	ENSGT00940000155200	ENSGT00940000164375.a	ENSGT00940000153793.k.a.a.a.b	ENSGT00940000153793.k.a.a.b.a	ENSGT00940000153793.l	ENSGT00390000017697.b #19	ENSGT00940000159836 #22	ENSGT00940000161650 #23	ENSGT00940000160687 #24	ENSGT00940000159757 #25	ENSGT00550000074901 #26	ENSGT00390000005075 #27	ENSGT00390000008295.a #28	ENSGT00940000159573 #29	ENSGT00940000160432 #30	ENSGT00940000163203	ENSGT00940000162264 #32	ENSGT00940000158005 #33	ENSGT00390000003283 #34	ENSGT00940000160587 #35	ENSGT00940000153691.a.a #36	ENSGT00940000153691.a.b #37
Marmotini_b	ANCESTRAL SPECIES	7	ENSGT00940000158063	ENSGT00420000029943	ENSGT00390000002016	ENSGT00940000162243	ENSGT00940000153528.a.b.a.a	ENSGT00390000018132.j	ENSGT00940000162924	ENSGT00940000155200	ENSGT00940000164375.a	ENSGT00940000153793.k.a.a.a.b	ENSGT00940000153793.k.a.a.b.a	ENSGT00940000153793.k.a.a.a.a.a.a	ENSGT00940000153793.k.a.a.a.a.a.b	ENSGT00940000164375.b	ENSGT00390000017697.b #19	ENSGT00940000159836 #22	ENSGT00940000161650 #23	ENSGT00940000160687 #24	ENSGT00940000159757 #25	ENSGT00550000074901 #26	ENSGT00390000005075 #27	ENSGT00390000008295.a #28	ENSGT00940000159573 #29	ENSGT00940000160432 #30	ENSGT00940000163203	ENSGT00940000162264 #32	ENSGT00940000158005 #33	ENSGT00390000003283 #34	ENSGT00940000160587 #35	ENSGT00940000153691.a.a #36	ENSGT00940000153691.a.b #37
Arctic ground squirrel	MODERN SPECIES	105															CIAO2B (ENSUPAG00010021302) #19	RRAD (ENSUPAG00010021305) #22	CDH16 (ENSUPAG00010021315) #23	PDP2 (ENSUPAG00010021334) #24	CA7 (ENSUPAG00010021336) #25	NAE1 (ENSUPAG00010021346) #26	TERB1 (ENSUPAG00010021363) #27	DYNC1LI2 (ENSUPAG00010021388) #28	CMTM4 (ENSUPAG00010021404) #29	CMTM3 (ENSUPAG00010021411) #30	ENSUPAG00010021429	CKLF (ENSUPAG00010021432) #32	TK2 (ENSUPAG00010021435) #33	ENSUPAG00010021443	BEAN1 (ENSUPAG00010021449) #34	CDH5 (ENSUPAG00010021462) #35	CDH11 (ENSUPAG00010021471) #36
Squirrel	MODERN SPECIES	75	TRADD (ENSSTOG00000011360)	B3GNT9 (ENSSTOG00000028759)	PHAF1 (ENSSTOG00000011346)	CBFB (ENSSTOG00000011344)	CES4A (ENSSTOG00000011337)	CES3 (ENSSTOG00000012032)	ENSSTOG00000025164	ENSSTOG00000026289	ENSSTOG00000027386	ENSSTOG00000022937	ENSSTOG00000025757	ENSSTOG00000024931	ENSSTOG00000019872	ENSSTOG00000028587	CIAO2B (ENSSTOG00000007870) #19	RRAD (ENSSTOG00000007859) #22	ENSSTOG00000007823 #23	ENSSTOG00000031778	ENSSTOG00000029943 #23	PDP2 (ENSSTOG00000007817) #24	CA7 (ENSSTOG00000021436) #25	NAE1 (ENSSTOG00000029230) #26	TERB1 (ENSSTOG00000007763) #27	DYNC1LI2 (ENSSTOG00000007750) #28	CMTM4 (ENSSTOG00000007736) #29	CMTM3 (ENSSTOG00000026680) #30	CKLF (ENSSTOG00000007682) #32	TK2 (ENSSTOG00000029024) #33	BEAN1 (ENSSTOG00000027189) #34	CDH5 (ENSSTOG00000006256) #35	CDH11 (ENSSTOG00000011815) #36
Eurasian red squirrel	MODERN SPECIES	8	MATCAP1 (ENSSVLG00005024362)	ENSSVLG00005024414	HSF4 (ENSSVLG00005024450)	FBXL8 (ENSSVLG00005024480)	TRADD (ENSSVLG00005024499)	B3GNT9 (ENSSVLG00005024534)	PHAF1 (ENSSVLG00005024553)	CBFB (ENSSVLG00005024570)	ENSSVLG00005024618	CES4A (ENSSVLG00005024667)	CES3 (ENSSVLG00005024805)	ENSSVLG00005025098	ENSSVLG00005025347	ENSSVLG00005025467	CIAO2B (ENSSVLG00005025484) #19	RRAD (ENSSVLG00005025495) #22	CDH16 (ENSSVLG00005025529) #23	PDP2 (ENSSVLG00005025571) #24	CA7 (ENSSVLG00005025581) #25	NAE1 (ENSSVLG00005025610) #26	TERB1 (ENSSVLG00005025637) #27	DYNC1LI2 (ENSSVLG00005025665) #28	CMTM4 (ENSSVLG00005025679) #29	CMTM3 (ENSSVLG00005025691) #30	ENSSVLG00005025706	CKLF (ENSSVLG00005025721) #32	TK2 (ENSSVLG00005025748) #33	BEAN1 (ENSSVLG00005016934) #34	ENSSVLG00005016998	CDH5 (ENSSVLG00005017067) #35	CDH11 (ENSSVLG00005017448) #36