Pecora	ANCESTRAL SPECIES	4	ENSGT00940000159455 #7	ENSGT00940000156252 #8	ENSGT01030000234613.a.b #9	ENSGT00390000004417.b #10	ENSGT00510000049353 #11	ENSGT00940000158063 #12	ENSGT00420000029943 #13	ENSGT00390000002016 #14	ENSGT00940000162243 #15	ENSGT00940000153528.a.b.a.a #16	ENSGT00390000018132 #17	ENSGT00940000162924 #18	ENSGT00940000155200 #19	ENSGT00940000153793 #20	ENSGT00390000017697.b #21	ENSGT00940000159836 #22	ENSGT00940000161650 #23	ENSGT00940000160687 #24	ENSGT00940000159757 #25	ENSGT00550000074901 #26	ENSGT00390000005075 #27	ENSGT00390000008295.a #28	ENSGT00940000159573 #29	ENSGT00940000160432 #30	ENSGT00390000005715 #31	ENSGT00940000163203.e	ENSGT00940000162264 #32	ENSGT01090000260388	ENSGT00940000158005 #33	ENSGT00530000063956.b.b	ENSGT00390000003283 #34
Percora_a	ANCESTRAL SPECIES	4	ENSGT00940000159455 #7	ENSGT00940000156252 #8	ENSGT01030000234613.a.b #9	ENSGT00390000004417.b #10	ENSGT00510000049353 #11	ENSGT00940000158063 #12	ENSGT00420000029943 #13	ENSGT00390000002016 #14	ENSGT00940000162243 #15	ENSGT00940000153528.a.b.a.a #16	ENSGT00390000018132 #17	ENSGT00940000162924 #18	ENSGT00940000155200 #19	ENSGT00940000153793 #20	ENSGT00390000017697.b #21	ENSGT00940000159836 #22	ENSGT00940000161650 #23	ENSGT00940000160687 #24	ENSGT00940000159757 #25	ENSGT00550000074901 #26	ENSGT00390000005075 #27	ENSGT00390000008295.a #28	ENSGT00940000159573 #29	ENSGT00940000160432 #30	ENSGT00390000005715 #31	ENSGT00940000163203.e	ENSGT00940000162264 #32	ENSGT01090000260388	ENSGT00940000158005 #33	ENSGT00530000063956.b.b	ENSGT00390000003283 #34
Bovidae	ANCESTRAL SPECIES	4	ENSGT00940000159455 #7	ENSGT00940000156252 #8	ENSGT01030000234613.a.b #9	ENSGT00390000004417.b #10	ENSGT00510000049353 #11	ENSGT00940000158063 #12	ENSGT00420000029943 #13	ENSGT00390000002016 #14	ENSGT00940000162243 #15	ENSGT00940000153528.a.b.a.a #16	ENSGT00390000018132 #17	ENSGT00940000162924 #18	ENSGT00940000155200 #19	ENSGT00940000153793 #20	ENSGT00390000017697.b #21	ENSGT00940000159836 #22	ENSGT00940000161650 #23	ENSGT00940000160687 #24	ENSGT00940000159757 #25	ENSGT00550000074901 #26	ENSGT00390000005075 #27	ENSGT00390000008295.a #28	ENSGT00940000159573 #29	ENSGT00940000160432 #30	ENSGT00390000005715 #31	ENSGT00940000163203.e	ENSGT00940000162264 #32	ENSGT01090000260388	ENSGT00940000158005 #33	ENSGT00530000063956.b.b	ENSGT00390000003283 #34
Caprinae	ANCESTRAL SPECIES	4	ENSGT00940000159455 #7	ENSGT00940000156252 #8	ENSGT01030000234613.a.b #9	ENSGT00390000004417.b #10	ENSGT00510000049353 #11	ENSGT00940000158063 #12	ENSGT00420000029943 #13	ENSGT00390000002016 #14	ENSGT00940000162243 #15	ENSGT00940000153528.a.b.a.a #16	ENSGT00390000018132 #17	ENSGT00940000162924 #18	ENSGT00940000155200 #19	ENSGT00940000153793 #20	ENSGT00390000017697.b #21	ENSGT00940000159836 #22	ENSGT00940000161650 #23	ENSGT00940000160687 #24	ENSGT00940000159757 #25	ENSGT00550000074901 #26	ENSGT00390000005075 #27	ENSGT00390000008295.a #28	ENSGT00940000159573 #29	ENSGT00940000160432 #30	ENSGT00390000005715 #31	ENSGT00940000163203.e	ENSGT00940000162264 #32	ENSGT00940000158005 #33	ENSGT00980000202834	ENSGT00390000003283 #34	ENSGT00940000160587 #35
Goat	MODERN SPECIES	9	ELMO3 (ENSCHIG00000026708) #7	E2F4 (ENSCHIG00000016663) #8	EXOC3L1 (ENSCHIG00000024506) #9	MATCAP1 (ENSCHIG00000015211) #10	ENSCHIG00000017201 #11	HSF4 (ENSCHIG00000003853) #12	FBXL8 (ENSCHIG00000015480) #13	TRADD (ENSCHIG00000024921) #14	B3GNT9 (ENSCHIG00000014321) #15	PHAF1 (ENSCHIG00000020303) #16	CBFB (ENSCHIG00000020674) #17	CES4A (ENSCHIG00000016586) #18	CES3 (ENSCHIG00000024208) #19	CES2 (ENSCHIG00000019303) #20	CIAO2B (ENSCHIG00000013136) #21	RRAD (ENSCHIG00000014464) #22	CDH16 (ENSCHIG00000023982) #23	PDP2 (ENSCHIG00000007829) #24	CA7 (ENSCHIG00000021493) #25	NAE1 (ENSCHIG00000009134) #26	TERB1 (ENSCHIG00000026054) #27	DYNC1LI2 (ENSCHIG00000014435) #28	CMTM4 (ENSCHIG00000021995) #29	CMTM3 (ENSCHIG00000019372) #30	CMTM2 (ENSCHIG00000025225) #31	CKLF (ENSCHIG00000023696) #32	TK2 (ENSCHIG00000025188) #33	BEAN1 (ENSCHIG00000002056) #34	CDH5 (ENSCHIG00000015547) #35	CDH11 (ENSCHIG00000010210) #36	ENSCHIG00000020417 #37
Rambouillet Sheep	MODERN SPECIES	5	ELMO3 (ENSOARG00020019220) #7	ENSOARG00020019148 #8	EXOC3L1 (ENSOARG00020019062) #9	MATCAP1 (ENSOARG00020018962) #10	ENSOARG00020018928 #11	HSF4 (ENSOARG00020018866) #12	FBXL8 (ENSOARG00020018825) #13	TRADD (ENSOARG00020018788) #14	B3GNT9 (ENSOARG00020018774) #15	PHAF1 (ENSOARG00020018589) #16	CBFB (ENSOARG00020018510) #17	CES4A (ENSOARG00020018190) #18	CES3 (ENSOARG00020017918) #19	CES2 (ENSOARG00020017788) #20	CIAO2B (ENSOARG00020017741) #21	RRAD (ENSOARG00020017701) #22	CDH16 (ENSOARG00020017267) #23	PDP2 (ENSOARG00020017226) #24	CA7 (ENSOARG00020017141) #25	NAE1 (ENSOARG00020016752) #26	TERB1 (ENSOARG00020016574) #27	DYNC1LI2 (ENSOARG00020016257) #28	ENSOARG00020016184	CMTM4 (ENSOARG00020016101) #29	CMTM3 (ENSOARG00020016016) #30	CMTM2 (ENSOARG00020015951) #31	ENSOARG00020015819	CKLF (ENSOARG00020015354) #32	TK2 (ENSOARG00020014347) #33	ENSOARG00020014298	BEAN1 (ENSOARG00020014207) #34
Bovinae	ANCESTRAL SPECIES	3	ENSGT00940000159455 #7	ENSGT00940000156252 #8	ENSGT01030000234613.a.b #9	ENSGT00390000004417.b #10	ENSGT00510000049353 #11	ENSGT00940000158063 #12	ENSGT00420000029943 #13	ENSGT00390000002016 #14	ENSGT00940000162243 #15	ENSGT00940000153528.a.b.a.a #16	ENSGT00390000018132 #17	ENSGT00940000162924 #18	ENSGT00940000155200 #19	ENSGT00940000153793 #20	ENSGT00390000017697.b #21	ENSGT00940000159836 #22	ENSGT00940000161650 #23	ENSGT00940000160687 #24	ENSGT00940000159757 #25	ENSGT00550000074901 #26	ENSGT00390000005075 #27	ENSGT00390000008295.a #28	ENSGT00940000159573 #29	ENSGT00940000160432 #30	ENSGT00390000005715 #31	ENSGT00940000163203.e	ENSGT00940000162264 #32	ENSGT01090000260388	ENSGT00940000158005 #33	ENSGT00530000063956.b.b	ENSGT00390000003283 #34
Bos	ANCESTRAL SPECIES	4	ENSGT00940000159455 #7	ENSGT00940000156252 #8	ENSGT01030000234613.a.b #9	ENSGT00390000004417.b #10	ENSGT00510000049353 #11	ENSGT00940000158063 #12	ENSGT00420000029943 #13	ENSGT00390000002016 #14	ENSGT00940000162243 #15	ENSGT00940000153528.a.b.a.a #16	ENSGT00390000018132 #17	ENSGT00940000162924 #18	ENSGT00940000155200 #19	ENSGT00940000153793 #20	ENSGT00390000017697.b #21	ENSGT00940000159836 #22	ENSGT00940000161650 #23	ENSGT00940000160687 #24	ENSGT00940000159757 #25	ENSGT00550000074901 #26	ENSGT00390000005075 #27	ENSGT00390000008295.a #28	ENSGT00940000159573 #29	ENSGT00940000160432 #30	ENSGT00390000005715 #31	ENSGT00940000163203.e	ENSGT00940000163203.f	ENSGT00940000162264 #32	ENSGT01090000260388	ENSGT00940000158005 #33	ENSGT00530000063956.b.b
Bos_b	ANCESTRAL SPECIES		ENSGT00940000159455 #7	ENSGT00940000156252 #8	ENSGT01030000234613.a.b #9	ENSGT00390000004417.b #10	ENSGT00510000049353 #11	ENSGT00940000158063 #12	ENSGT00420000029943 #13	ENSGT00390000002016 #14	ENSGT00940000162243 #15	ENSGT00940000153528.a.b.a.a #16	ENSGT00390000018132 #17	ENSGT00940000162924 #18	ENSGT00940000155200 #19	ENSGT00940000153793 #20	ENSGT00390000017697.b #21	ENSGT00940000159836 #22	ENSGT00940000161650 #23	ENSGT00940000160687 #24	ENSGT00940000159757 #25	ENSGT00550000074901 #26	ENSGT00390000005075 #27	ENSGT00390000008295.a #28	ENSGT00940000159573 #29	ENSGT00940000160432 #30	ENSGT00390000005715 #31	ENSGT00940000163203.e	ENSGT00940000163203.f	ENSGT00940000162264 #32	ENSGT01090000260388	ENSGT00940000158005 #33	ENSGT00530000063956.b.b
Cow	MODERN SPECIES	9	ELMO3 (ENSBTAG00000001286) #7	E2F4 (ENSBTAG00000012063) #8	EXOC3L1 (ENSBTAG00000012035) #9	MATCAP1 (ENSBTAG00000003521) #10	NOL3 (ENSBTAG00000003519) #11	HSF4 (ENSBTAG00000003514) #12	FBXL8 (ENSBTAG00000023632) #13	TRADD (ENSBTAG00000012642) #14	B3GNT9 (ENSBTAG00000049665) #15	PHAF1 (ENSBTAG00000005058) #16	CBFB (ENSBTAG00000016103) #17	CES4A (ENSBTAG00000038325) #18	CES3 (ENSBTAG00000040413) #19	CES2 (ENSBTAG00000005093) #20	CIAO2B (ENSBTAG00000013931) #21	RRAD (ENSBTAG00000013929) #22	CDH16 (ENSBTAG00000009585) #23	PDP2 (ENSBTAG00000046708) #24	CA7 (ENSBTAG00000020889) #25	ENSBTAG00000049893	NAE1 (ENSBTAG00000010132) #26	TERB1 (ENSBTAG00000016438) #27	DYNC1LI2 (ENSBTAG00000000458) #28	CMTM4 (ENSBTAG00000001104) #29	CMTM3 (ENSBTAG00000054188) #30	CMTM2 (ENSBTAG00000032576) #31	ENSBTAG00000054627	ENSBTAG00000054171	CKLF (ENSBTAG00000038858) #32	ENSBTAG00000049507	TK2 (ENSBTAG00000005152) #33
Hybrid Bos Indicus	MODERN SPECIES	9	ELMO3 (ENSBIXG00005021218) #7	E2F4 (ENSBIXG00005021168) #8	EXOC3L1 (ENSBIXG00005005746) #9	MATCAP1 (ENSBIXG00005021118) #10	ENSBIXG00005021092 #11	HSF4 (ENSBIXG00005021067) #12	FBXL8 (ENSBIXG00005020996) #13	TRADD (ENSBIXG00005020967) #14	B3GNT9 (ENSBIXG00005005675) #15	PHAF1 (ENSBIXG00005020907) #16	CBFB (ENSBIXG00005003530) #17	CES4A (ENSBIXG00005020830) #18	CES3 (ENSBIXG00005003507) #19	CES2 (ENSBIXG00005020621) #20	CIAO2B (ENSBIXG00005003480) #21	RRAD (ENSBIXG00005020587) #22	CDH16 (ENSBIXG00005020523) #23	PDP2 (ENSBIXG00005020253) #24	CA7 (ENSBIXG00005003374) #25	NAE1 (ENSBIXG00005020228) #26	ENSBIXG00005020202	TERB1 (ENSBIXG00005003341) #27	DYNC1LI2 (ENSBIXG00005020114) #28	ENSBIXG00005019997	CMTM3 (ENSBIXG00005019988) #30	CMTM2 (ENSBIXG00005003252) #31	ENSBIXG00005019867	ENSBIXG00005019855	CKLF (ENSBIXG00005005529) #32	ENSBIXG00005003209	TK2 (ENSBIXG00005019627) #33
Bos_a	ANCESTRAL SPECIES	22	ENSGT00940000159455 #7	ENSGT00940000156252 #8	ENSGT01030000234613.a.b #9	ENSGT00390000004417.b #10	ENSGT00510000049353 #11	ENSGT00940000158063 #12	ENSGT00420000029943 #13	ENSGT00390000002016 #14	ENSGT00940000162243 #15	ENSGT00940000153528.a.b.a.a #16	ENSGT00390000018132 #17	ENSGT00940000162924 #18	ENSGT00940000155200 #19	ENSGT00940000153793 #20	ENSGT00390000017697.b #21	ENSGT00940000159836 #22	ENSGT00940000161650 #23	ENSGT00940000160687 #24	ENSGT00940000159757 #25	ENSGT00550000074901 #26	ENSGT00390000005075 #27	ENSGT00390000008295.a #28	ENSGT00940000159573 #29	ENSGT00940000160432 #30	ENSGT00390000005715 #31	ENSGT00940000163203.e	ENSGT00940000163203.f	ENSGT00940000162264 #32	ENSGT01090000260388	ENSGT00940000158005 #33	ENSGT00530000063956.b.b
Wild yak	MODERN SPECIES	818	ELMO3 (ENSBMUG00000004292) #7	E2F4 (ENSBMUG00000004337) #8	EXOC3L1 (ENSBMUG00000004386) #9	MATCAP1 (ENSBMUG00000004402) #10	ENSBMUG00000004421 #11	HSF4 (ENSBMUG00000004436) #12	FBXL8 (ENSBMUG00000004457) #13	TRADD (ENSBMUG00000004465) #14	B3GNT9 (ENSBMUG00000004470) #15	PHAF1 (ENSBMUG00000004491) #16	ENSBMUG00000004501 #17	CES4A (ENSBMUG00000004549) #18	CES3 (ENSBMUG00000004603) #19	CES2 (ENSBMUG00000004631) #20	ENSBMUG00000004656 #21	RRAD (ENSBMUG00000004672) #22	CDH16 (ENSBMUG00000004891) #23	PDP2 (ENSBMUG00000004973) #24	CA7 (ENSBMUG00000004993) #25	NAE1 (ENSBMUG00000005037) #26	TERB1 (ENSBMUG00000005064) #27	DYNC1LI2 (ENSBMUG00000005139) #28	CMTM4 (ENSBMUG00000005178) #29	CMTM3 (ENSBMUG00000005192) #30	CMTM2 (ENSBMUG00000005199) #31	ENSBMUG00000005220	CKLF (ENSBMUG00000005291) #32	ENSBMUG00000005319	TK2 (ENSBMUG00000005344) #33	ENSBMUG00000005359	BEAN1 (ENSBMUG00000005363) #34
Domestic yak	MODERN SPECIES	12	ELMO3 (ENSBGRG00000026869) #7	E2F4 (ENSBGRG00000026873) #8	EXOC3L1 (ENSBGRG00000026874) #9	MATCAP1 (ENSBGRG00000026876) #10	NOL3 (ENSBGRG00000026877) #11	HSF4 (ENSBGRG00000026879) #12	FBXL8 (ENSBGRG00000026881) #13	TRADD (ENSBGRG00000026883) #14	B3GNT9 (ENSBGRG00000026884) #15	PHAF1 (ENSBGRG00000026886) #16	CBFB (ENSBGRG00000026888) #17	CES4A (ENSBGRG00000026891) #18	CES3 (ENSBGRG00000026893) #19	CES2 (ENSBGRG00000026894) #20	ENSBGRG00000026895 #21	RRAD (ENSBGRG00000026896) #22	CDH16 (ENSBGRG00000026897) #23	ENSBGRG00000026900	PDP2 (ENSBGRG00000026901) #24	CA7 (ENSBGRG00000026902) #25	NAE1 (ENSBGRG00000026903) #26	TERB1 (ENSBGRG00000026906) #27	DYNC1LI2 (ENSBGRG00000026908) #28	CMTM4 (ENSBGRG00000026912) #29	CMTM3 (ENSBGRG00000026915) #30	CMTM2 (ENSBGRG00000026918) #31	ENSBGRG00000026920	ENSBGRG00000026921	CKLF (ENSBGRG00000026922) #32	TK2 (ENSBGRG00000026924) #33	ENSBGRG00000026925
American bison	MODERN SPECIES	3211	E2F4 (ENSBBBG00000001117) #8	EXOC3L1 (ENSBBBG00000001140) #9	MATCAP1 (ENSBBBG00000001162) #10	NOL3 (ENSBBBG00000001188) #11	HSF4 (ENSBBBG00000001199) #12	FBXL8 (ENSBBBG00000014921) #13	TRADD (ENSBBBG00000007361) #14	B3GNT9 (ENSBBBG00000003675) #15	PHAF1 (ENSBBBG00000014888) #16	ENSBBBG00000003663 #17	CES4A (ENSBBBG00000007359) #18	ENSBBBG00000014799 #19	ENSBBBG00000014790 #19	CES2 (ENSBBBG00000014778) #20	CIAO2B (ENSBBBG00000014743) #21	RRAD (ENSBBBG00000014738) #22	CDH16 (ENSBBBG00000014712) #23	PDP2 (ENSBBBG00000009129) #24	CA7 (ENSBBBG00000002864) #25	NAE1 (ENSBBBG00000007603) #26	TERB1 (ENSBBBG00000003383) #27	DYNC1LI2 (ENSBBBG00000003358) #28	CMTM3 (ENSBBBG00000009121) #30	CMTM2 (ENSBBBG00000014393) #31	ENSBBBG00000014390	CKLF (ENSBBBG00000003289) #32	ENSBBBG00000003275	TK2 (ENSBBBG00000003273) #33	BEAN1 (ENSBBBG00000014334) #34	CDH5 (ENSBBBG00000003264) #35	CDH11 (ENSBBBG00000014303) #36
Siberian musk deer	MODERN SPECIES	125	ELMO3 (ENSMMSG00000002100) #7	E2F4 (ENSMMSG00000002147) #8	EXOC3L1 (ENSMMSG00000002185) #9	MATCAP1 (ENSMMSG00000002222) #10	NOL3 (ENSMMSG00000002238) #11	HSF4 (ENSMMSG00000002260) #12	FBXL8 (ENSMMSG00000002277) #13	TRADD (ENSMMSG00000002296) #14	B3GNT9 (ENSMMSG00000002307) #15	PHAF1 (ENSMMSG00000002333) #16	CBFB (ENSMMSG00000002381) #17	CES4A (ENSMMSG00000002458) #18	CES3 (ENSMMSG00000002817) #19	CES2 (ENSMMSG00000002881) #20	CIAO2B (ENSMMSG00000002906) #21	RRAD (ENSMMSG00000002919) #22	CDH16 (ENSMMSG00000003008) #23	PDP2 (ENSMMSG00000003451) #24	CA7 (ENSMMSG00000003460) #25	NAE1 (ENSMMSG00000003506) #26	TERB1 (ENSMMSG00000003643) #27	DYNC1LI2 (ENSMMSG00000003693) #28	CMTM4 (ENSMMSG00000003747) #29	CMTM3 (ENSMMSG00000003767) #30	ENSMMSG00000003792 #31	ENSMMSG00000003808	CKLF (ENSMMSG00000003823) #32	TK2 (ENSMMSG00000003859) #33	BEAN1 (ENSMMSG00000003905) #34	CDH5 (ENSMMSG00000003914) #35	CDH11 (ENSMMSG00000003928) #36
Yarkand deer	MODERN SPECIES	27	ENSCHYG00000024305	ELMO3 (ENSCHYG00000024035) #7	E2F4 (ENSCHYG00000023962) #8	EXOC3L1 (ENSCHYG00000023914) #9	MATCAP1 (ENSCHYG00000023823) #10	NOL3 (ENSCHYG00000023759) #11	ENSCHYG00000023612 #12	TRADD (ENSCHYG00000023549) #14	B3GNT9 (ENSCHYG00000023536) #15	PHAF1 (ENSCHYG00000023443) #16	CBFB (ENSCHYG00000023398) #17	CES4A (ENSCHYG00000023100) #18	CES3 (ENSCHYG00000022898) #19	CES2 (ENSCHYG00000022832) #20	ENSCHYG00000022775 #21	RRAD (ENSCHYG00000022736) #22	CDH16 (ENSCHYG00000022298) #23	PDP2 (ENSCHYG00000022241) #24	CA7 (ENSCHYG00000022143) #25	NAE1 (ENSCHYG00000021779) #26	TERB1 (ENSCHYG00000021711) #27	DYNC1LI2 (ENSCHYG00000021245) #28	CMTM4 (ENSCHYG00000021086) #29	CMTM3 (ENSCHYG00000020938) #30	CMTM2 (ENSCHYG00000020882) #31	ENSCHYG00000020818	CKLF (ENSCHYG00000020361) #32	TK2 (ENSCHYG00000019962) #33	ENSCHYG00000019922	BEAN1 (ENSCHYG00000019755) #34	ENSCHYG00000019729