Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00390000001015 #8	ENSGT00940000160895 #9	ENSGT00510000050180	ENSGT00940000155124 #10	ENSGT00940000162129.d.s.b #11	ENSGT00940000162212 #12	ENSGT00940000169419	ENSGT00390000004360.a.b.b #14	ENSGT00950000183115.a #15	ENSGT01040000240444.A.b.a.a #16	ENSGT00390000003032 #18	ENSGT00390000003006	ENSGT00940000153386.A #20	ENSGT01050000244937.a.b.b #19	ENSGT00390000018026 #21	ENSGT00940000157606 #22	ENSGT00940000157437	ENSGT01100000263484.A.c.a.a #23	ENSGT00940000155762.`c.a #24	ENSGT00390000000263 #25	ENSGT00940000157155 #26	ENSGT00390000015492.B #27	ENSGT00530000063106.A #29	ENSGT00950000183063.c.b.a.h ##30	ENSGT00950000183063.c.b.a.g.a #30	ENSGT00950000183063.c.b.a.g.b #32	ENSGT00940000157673 #33	ENSGT00940000157183.a.b #34	ENSGT00940000159794 #35	ENSGT00940000160041 #36	ENSGT00940000154694 #37
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00390000001015 #8	ENSGT00940000160895 #9	ENSGT00510000050180	ENSGT00940000155124 #10	ENSGT00940000162129.d.s.b #11	ENSGT00940000162212 #12	ENSGT00940000169419	ENSGT00390000004360.a.b.b #14	ENSGT00950000183115.a #15	ENSGT01040000240444.A.b.a.a #16	ENSGT00390000003032 #18	ENSGT00390000003006	ENSGT00940000153386.A #20	ENSGT01050000244937.a.b.b #19	ENSGT00390000018026 #21	ENSGT00940000157606 #22	ENSGT00940000157437	ENSGT01100000263484.A.c.a.a #23	ENSGT00940000155762.`c.a #24	ENSGT00390000000263 #25	ENSGT00940000157155 #26	ENSGT00390000015492.B #27	ENSGT00530000063106.A #29	ENSGT00950000183063.c.b.a.g.a #30	ENSGT00950000183063.c.b.a.g.b #32	ENSGT00940000157673 #33	ENSGT00940000157183.a.b #34	ENSGT00940000159794 #35	ENSGT00940000160041 #36	ENSGT00940000154694 #37	ENSGT00390000012058.c.a
Marmotini	ANCESTRAL SPECIES	2	ENSGT00390000001015 #8	ENSGT00940000160895 #9	ENSGT00510000050180	ENSGT00940000155124 #10	ENSGT00940000162129.d.s.b #11	ENSGT00940000162212 #12	ENSGT00940000162129.d.t #13	ENSGT00390000004360.a.b.b #14	ENSGT00950000183115.a #15	ENSGT01040000240444.A.b.a.a #16	ENSGT00390000003032 #18	ENSGT00390000003006	ENSGT00940000153386.A #20	ENSGT01050000244937.a.b.b #19	ENSGT00390000018026 #21	ENSGT00940000157606 #22	ENSGT00940000157437	ENSGT01100000263484.A.c.a.a #23	ENSGT00940000155762.`c.a #24	ENSGT00390000000263 #25	ENSGT00940000157155 #26	ENSGT00390000015492.B #27	ENSGT00530000063106.A #29	ENSGT00950000183063.c.b.a.g.a.c #30	ENSGT00950000183063.c.b.a.g.b #32	ENSGT00940000157673 #33	ENSGT00940000157183.a.b #34	ENSGT00940000159794 #35	ENSGT00940000160041 #36	ENSGT00940000154694 #37	ENSGT00390000012058.c.a
Marmotini_b	ANCESTRAL SPECIES	41	ENSGT00390000001015 #8	ENSGT00940000160895 #9	ENSGT00510000050180	ENSGT00940000155124 #10	ENSGT00940000162129.d.s.b #11	ENSGT00940000162212 #12	ENSGT00940000162129.d.t #13	ENSGT00390000004360.a.b.b #14	ENSGT00950000183115.a #15	ENSGT01040000240444.A.b.a.a #16	ENSGT00390000003032 #18	ENSGT00390000003006	ENSGT00940000153386.A #20	ENSGT01050000244937.a.b.b #19	ENSGT00390000018026 #21	ENSGT00940000157606 #22	ENSGT00940000157437	ENSGT01100000263484.A.c.a.a #23	ENSGT00940000155762.`c.a #24	ENSGT00390000000263 #25	ENSGT00940000157155 #26	ENSGT00390000015492.B #27	ENSGT00530000063106.A #29	ENSGT00950000183063.c.b.a.g.a.c #30	ENSGT00950000183063.c.b.a.g.b #32	ENSGT00940000157673 #33	ENSGT00940000157183.a.b #34	ENSGT00940000159794 #35	ENSGT00940000160041 #36	ENSGT00940000154694 #37	ENSGT00390000012058.c.a
Squirrel	MODERN SPECIES	125	TRIP12 (ENSSTOG00000014937) #7	FBXO36 (ENSSTOG00000010041) #8	SLC16A14 (ENSSTOG00000023049) #9	ENSSTOG00000027040 #10	ENSSTOG00000005247 #11	ENSSTOG00000005264 #12	ENSSTOG00000025756 #13	CAB39 (ENSSTOG00000028896) #14	ITM2C (ENSSTOG00000009342) #15	GPR55 (ENSSTOG00000002443) #16	ENSSTOG00000023805 #17	SPATA3 (ENSSTOG00000031451) #18	HTR2B (ENSSTOG00000009378) #19	PSMD1 (ENSSTOG00000009344) #20	ARMC9 (ENSSTOG00000008474) #21	B3GNT7 (ENSSTOG00000000196) #22	NMUR1 (ENSSTOG00000019555) #23	ENSSTOG00000034295 #24	PDE6D (ENSSTOG00000006196) #25	COPS7B (ENSSTOG00000022276) #26	NPPC (ENSSTOG00000027741) #27	ENSSTOG00000022984 #28	DIS3L2 (ENSSTOG00000005668) #29	ENSSTOG00000024416 #30	ENSSTOG00000005441 #31	ENSSTOG00000005478 #32	ECEL1 (ENSSTOG00000005389) #33	PRSS56 (ENSSTOG00000021941) #34	CHRND (ENSSTOG00000003464) #35	CHRNG (ENSSTOG00000003488) #36	EIF4E2 (ENSSTOG00000003508) #37
Arctic ground squirrel	MODERN SPECIES	169	SLC16A14 (ENSUPAG00010004779) #9	ENSUPAG00010004788	ENSUPAG00010004794 #10	ENSUPAG00010004804 #11	ENSUPAG00010004810 #11	ENSUPAG00010004816 #12	ENSUPAG00010004832 ##11	CAB39 (ENSUPAG00010004840) #14	ITM2C (ENSUPAG00010004854) #15	GPR55 (ENSUPAG00010004871) #16	SPATA3 (ENSUPAG00010004876) #18	C2orf72 (ENSUPAG00010004885)	PSMD1 (ENSUPAG00010004890) #20	HTR2B (ENSUPAG00010004952) #19	ARMC9 (ENSUPAG00010004958) #21	B3GNT7 (ENSUPAG00010005006) #22	NCL (ENSUPAG00010005009)	NMUR1 (ENSUPAG00010005026) #23	PTMA (ENSUPAG00010005034) #24	PDE6D (ENSUPAG00010005053) #25	COPS7B (ENSUPAG00010005061) #26	NPPC (ENSUPAG00010005072) #27	ENSUPAG00010005078	DIS3L2 (ENSUPAG00010005084) #29
Alpin marmot	MODERN SPECIES	8	ENSMMMG00000001162	ENSMMMG00000001172 #10	ENSMMMG00000001201 #11	ENSMMMG00000001221 #11	ENSMMMG00000001242 #12	ENSMMMG00000001250	ENSMMMG00000001285 ##11	CAB39 (ENSMMMG00000001293) #14	ITM2C (ENSMMMG00000001305) #15	GPR55 (ENSMMMG00000001312) #16	ENSMMMG00000001341 #18	PSMD1 (ENSMMMG00000001400) #20	HTR2B (ENSMMMG00000001431) #19	ENSMMMG00000001440	ARMC9 (ENSMMMG00000001453) #21	B3GNT7 (ENSMMMG00000001597) #22	NCL (ENSMMMG00000001601)	NMUR1 (ENSMMMG00000001655) #23	PDE6D (ENSMMMG00000001702) #25	COPS7B (ENSMMMG00000001727) #26	NPPC (ENSMMMG00000001745) #27	DIS3L2 (ENSMMMG00000001761) #29	ENSMMMG00000001848 #30	ENSMMMG00000001904 #30	ENSMMMG00000001927 #32	ENSMMMG00000002016 #33	PRSS56 (ENSMMMG00000002024) #34	CHRND (ENSMMMG00000002047) #35	CHRNG (ENSMMMG00000002089) #36	EIF4E2 (ENSMMMG00000002124) #37	EFHD1 (ENSMMMG00000002254)
Eurasian red squirrel	MODERN SPECIES	12	ENSSVLG00005012123 #9	ENSSVLG00005012200	ENSSVLG00005012253 #10	ENSSVLG00005012297 #11	ENSSVLG00005012384 #11	ENSSVLG00005012442 #12	ENSSVLG00005012482	CAB39 (ENSSVLG00005012531) #14	ITM2C (ENSSVLG00005012584) #15	GPR55 (ENSSVLG00005012653) #16	ENSSVLG00005012681 #18	C2orf72 (ENSSVLG00005012755)	PSMD1 (ENSSVLG00005012861) #20	HTR2B (ENSSVLG00005013070) #19	ARMC9 (ENSSVLG00005013338) #21	B3GNT7 (ENSSVLG00005013469) #22	ENSSVLG00005013597	NMUR1 (ENSSVLG00005013834) #23	ENSSVLG00005013861	PDE6D (ENSSVLG00005014039) #25	COPS7B (ENSSVLG00005014135) #26	NPPC (ENSSVLG00005014279) #27	DIS3L2 (ENSSVLG00005014337) #29	ENSSVLG00005014581 #30	ENSSVLG00005014716 #30	ENSSVLG00005014847 #30	ENSSVLG00005014965 #32	ECEL1 (ENSSVLG00005015117) #33	PRSS56 (ENSSVLG00005015425) #34	CHRND (ENSSVLG00005015554) #35	CHRNG (ENSSVLG00005015809) #36
Hystricomorpha	ANCESTRAL SPECIES	28	ENSGT00390000001015 #8	ENSGT00940000160895 #9	ENSGT00510000050180	ENSGT00940000155124 #10	ENSGT00940000162129.d.t #13	ENSGT00940000162212 #12	ENSGT00390000004360.a.b.b #14	ENSGT00950000183115.a #15	ENSGT01040000240444.A.b.a.a #16	ENSGT00390000003032 #18	ENSGT00390000003006	ENSGT00940000153386.A.a #20	ENSGT01050000244937.a.b.b #19	ENSGT00940000153386.A.b #20	ENSGT00390000018026 #21	ENSGT00940000157606 #22	ENSGT00940000157437	ENSGT01100000263484.A.c.a.a #23	ENSGT00940000155762.`c.b ##24	ENSGT00390000000263 #25	ENSGT00940000157155 #26	ENSGT00390000015492.B #27	ENSGT00530000063106.A #29	ENSGT00950000183063.c.b.a.h.a.b ##30	ENSGT00950000183063.c.b.a.h.b ##30	ENSGT00940000157673 #33	ENSGT00940000157183.a.b #34	ENSGT00940000159794 #35	ENSGT00940000160041 #36	ENSGT00940000154694 #37	ENSGT00390000012058.c.a
Hystricomorpha_a	ANCESTRAL SPECIES	32	ENSGT00940000156517 #7	ENSGT00390000001015 #8	ENSGT00940000160895 #9	ENSGT00510000050180	ENSGT00940000155124 #10	ENSGT00940000162129.d.t #13	ENSGT00940000162212 #12	ENSGT00390000004360.a.b.b #14	ENSGT00950000183115.a #15	ENSGT01040000240444.A.b.a.a #16	ENSGT00390000003032 #18	ENSGT00940000153386.A.a #20	ENSGT01050000244937.a.b.b #19	ENSGT00940000153386.A.b #20	ENSGT00390000018026 #21	ENSGT00940000157606 #22	ENSGT00940000157437	ENSGT01100000263484.A.c.a.a #23	ENSGT00940000155762.`c.b ##24	ENSGT00390000000263 #25	ENSGT00940000157155 #26	ENSGT00390000015492.B #27	ENSGT00530000063106.A #29	ENSGT00950000183063.c.b.a.h.a.b ##30	ENSGT00950000183063.c.b.a.h.a.a ##30	ENSGT00950000183063.c.b.a.h.b ##30	ENSGT00940000157673 #33	ENSGT00940000157183.a.b #34	ENSGT00940000159794 #35	ENSGT00940000160041 #36	ENSGT00940000154694 #37
Guinea pig	MODERN SPECIES	13	DNER (ENSCPOG00000011551)	TRIP12 (ENSCPOG00000007990) #7	FBXO36 (ENSCPOG00000025378) #8	SLC16A14 (ENSCPOG00000034941) #9	ENSCPOG00000020462	ENSCPOG00000025399 #10	ENSCPOG00000010544 #13	ENSCPOG00000038210 #12	CAB39 (ENSCPOG00000032166) #14	ITM2C (ENSCPOG00000012713) #15	GPR55 (ENSCPOG00000004832) #16	SPATA3 (ENSCPOG00000006558) #18	HTR2B (ENSCPOG00000000433) #19	PSMD1 (ENSCPOG00000000431) #20	ARMC9 (ENSCPOG00000008938) #21	B3GNT7 (ENSCPOG00000002351) #22	NCL (ENSCPOG00000001034)	ENSCPOG00000005181 #23	ENSCPOG00000022634	PDE6D (ENSCPOG00000037612) #25	COPS7B (ENSCPOG00000020577) #26	NPPC (ENSCPOG00000027589) #27	DIS3L2 (ENSCPOG00000005205) #29	ENSCPOG00000025911 ##30	ENSCPOG00000012222 ##30	ECEL1 (ENSCPOG00000004617) #33	PRSS56 (ENSCPOG00000038726) #34	CHRND (ENSCPOG00000005665) #35	CHRNG (ENSCPOG00000020372) #36	EIF4E2 (ENSCPOG00000005668) #37	EFHD1 (ENSCPOG00000026337)
Hystricomorpha_b	ANCESTRAL SPECIES	28	ENSGT00940000156517 #7	ENSGT00390000001015 #8	ENSGT00940000160895 #9	ENSGT00510000050180	ENSGT00940000155124 #10	ENSGT00940000162129.d.t #13	ENSGT00940000162212 #12	ENSGT00390000004360.a.b.b #14	ENSGT00950000183115.a #15	ENSGT01040000240444.A.b.a.a #16	ENSGT00390000003032 #18	ENSGT00940000153386.A.a #20	ENSGT01050000244937.a.b.b #19	ENSGT00940000153386.A.b #20	ENSGT00390000018026 #21	ENSGT00940000157606 #22	ENSGT00940000157437	ENSGT01100000263484.A.c.a.a #23	ENSGT00940000155762.`c.b ##24	ENSGT00390000000263 #25	ENSGT00940000157155 #26	ENSGT00390000015492.B #27	ENSGT00530000063106.A #29	ENSGT00950000183063.c.b.a.h.a.b ##30	ENSGT00950000183063.c.b.a.h.a.a ##30	ENSGT00950000183063.c.b.a.h.b ##30	ENSGT00940000157673 #33	ENSGT00940000157183.a.b #34	ENSGT00940000159794 #35	ENSGT00940000160041 #36	ENSGT00940000154694 #37
Degu	MODERN SPECIES	130	PID1 (ENSODEG00000008905)	DNER (ENSODEG00000006981)	ENSODEG00000007427	TRIP12 (ENSODEG00000009098) #7	SLC16A14 (ENSODEG00000007138) #9	ENSODEG00000007283 #10	ENSODEG00000010013 #13	ENSODEG00000006353 #12	CAB39 (ENSODEG00000006973) #14	ITM2C (ENSODEG00000007143) #15	ENSODEG00000019367	SPATA3 (ENSODEG00000006991) #18	ENSODEG00000006511 #20	HTR2B (ENSODEG00000007544) #19	ARMC9 (ENSODEG00000008401) #21	B3GNT7 (ENSODEG00000008876) #22	ENSODEG00000007803	NMUR1 (ENSODEG00000006998) #23	ENSODEG00000007492 ##24	ENSODEG00000006860 #25	COPS7B (ENSODEG00000006886) #26	NPPC (ENSODEG00000007066) #27	ENSODEG00000019419	DIS3L2 (ENSODEG00000007857) #29	ENSODEG00000007255	ENSODEG00000007325 ##30	ENSODEG00000008145 ##30	ENSODEG00000011365 ##30	ECEL1 (ENSODEG00000007457) #33	PRSS56 (ENSODEG00000007807) #34	CHRND (ENSODEG00000007466) #35
Long-tailed chinchilla	MODERN SPECIES	160	ENSCLAG00000006844 #7	FBXO36 (ENSCLAG00000009490) #8	SLC16A14 (ENSCLAG00000008363) #9	ENSCLAG00000011634	ENSCLAG00000011459	ENSCLAG00000013705 #10	ENSCLAG00000012221 #13	ENSCLAG00000012838 #12	CAB39 (ENSCLAG00000007339) #14	ITM2C (ENSCLAG00000006596) #15	GPR55 (ENSCLAG00000014005) #16	SPATA3 (ENSCLAG00000013092) #18	HTR2B (ENSCLAG00000011693) #19	PSMD1 (ENSCLAG00000009721) #20	ARMC9 (ENSCLAG00000014505) #21	B3GNT7 (ENSCLAG00000018090) #22	NCL (ENSCLAG00000013080)	NMUR1 (ENSCLAG00000011387) #23	ENSCLAG00000014992	ENSCLAG00000011106 #25	COPS7B (ENSCLAG00000009412) #26	NPPC (ENSCLAG00000014093) #27	DIS3L2 (ENSCLAG00000010200) #29	ENSCLAG00000008695 ##30	ENSCLAG00000007115 ##30	ENSCLAG00000013522 ##30	ENSCLAG00000009805 #33	ENSCLAG00000008842 #33	PRSS56 (ENSCLAG00000007988) #34	CHRND (ENSCLAG00000014396) #35	CHRNG (ENSCLAG00000008928) #36
Naked mole-rat female	MODERN SPECIES	17	ENSHGLG00000006168	ENSHGLG00000020453	TRIP12 (ENSHGLG00000008889) #7	FBXO36 (ENSHGLG00000002884) #8	SLC16A14 (ENSHGLG00000002999) #9	ENSHGLG00000032383 ##11	SP100 (ENSHGLG00000003347) #12	CAB39 (ENSHGLG00000035528) #14	ITM2C (ENSHGLG00000003561) #15	GPR55 (ENSHGLG00000002371) #16	SPATA3 (ENSHGLG00000002652) #18	C2orf72 (ENSHGLG00000002913)	PSMD1 (ENSHGLG00000003111) #20	HTR2B (ENSHGLG00000001546) #19	ARMC9 (ENSHGLG00000001678) #21	B3GNT7 (ENSHGLG00000035064) #22	ENSHGLG00000002031	ENSHGLG00000001426	ENSHGLG00000001587 ##24	PDE6D (ENSHGLG00000001979) #25	ENSHGLG00000002311 #26	NPPC (ENSHGLG00000002343) #27	DIS3L2 (ENSHGLG00000002429) #29	ENSHGLG00000020731	ENSHGLG00000002859 ##30	ENSHGLG00000003323 ##30	ENSHGLG00000003716 ##30	ECEL1 (ENSHGLG00000004027) #33	PRSS56 (ENSHGLG00000004901) #34	CHRND (ENSHGLG00000006318) #35	CHRNG (ENSHGLG00000002147) #36