Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00390000001015	ENSGT00940000160895 #7	ENSGT00510000050180 #8	ENSGT00940000155124 #9	ENSGT00940000162129.d.s.b #11	ENSGT00940000162212 #12	ENSGT00940000169419	ENSGT00390000004360.a.b.b #14	ENSGT00950000183115.a #15	ENSGT01040000240444.A.b.a.a #16	ENSGT00390000003032 #17	ENSGT00390000003006 #18	ENSGT00940000153386.A #19	ENSGT01050000244937.a.b.b #20	ENSGT00390000018026 #21	ENSGT00940000157606 #22	ENSGT00940000157437 #23	ENSGT01100000263484.A.c.a.a #24	ENSGT00940000155762.`c.a #25	ENSGT00390000000263 #26	ENSGT00940000157155 #27	ENSGT00390000015492.B #28	ENSGT00530000063106.A #30	ENSGT00950000183063.c.b.a.h	ENSGT00950000183063.c.b.a.g.a	ENSGT00950000183063.c.b.a.g.b	ENSGT00940000157673	ENSGT00940000157183.a.b	ENSGT00940000159794	ENSGT00940000160041	ENSGT00940000154694
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00390000001015	ENSGT00940000160895 #7	ENSGT00510000050180 #8	ENSGT00940000155124 #9	ENSGT00940000162129.d.s.b #11	ENSGT00940000162212 #12	ENSGT00940000169419	ENSGT00390000004360.a.b.b #14	ENSGT00950000183115.a #15	ENSGT01040000240444.A.b.a.a #16	ENSGT00390000003032 #17	ENSGT00390000003006 #18	ENSGT00940000153386.A #19	ENSGT01050000244937.a.b.b #20	ENSGT00390000018026 #21	ENSGT00940000157606 #22	ENSGT00940000157437 #23	ENSGT01100000263484.A.c.a.a #24	ENSGT00940000155762.`c.a #25	ENSGT00390000000263 #26	ENSGT00940000157155 #27	ENSGT00390000015492.B #28	ENSGT00530000063106.A #30	ENSGT00950000183063.c.b.a.g.a	ENSGT00950000183063.c.b.a.g.b	ENSGT00940000157673	ENSGT00940000157183.a.b	ENSGT00940000159794	ENSGT00940000160041	ENSGT00940000154694	ENSGT00390000012058.c.a
Marmotini	ANCESTRAL SPECIES	2	ENSGT00390000001015	ENSGT00940000160895 #7	ENSGT00510000050180 #8	ENSGT00940000155124 #9	ENSGT00940000162129.d.s.b #11	ENSGT00940000162212 #12	ENSGT00940000162129.d.t ##13	ENSGT00390000004360.a.b.b #14	ENSGT00950000183115.a #15	ENSGT01040000240444.A.b.a.a #16	ENSGT00390000003032 #17	ENSGT00390000003006 #18	ENSGT00940000153386.A #19	ENSGT01050000244937.a.b.b #20	ENSGT00390000018026 #21	ENSGT00940000157606 #22	ENSGT00940000157437 #23	ENSGT01100000263484.A.c.a.a #24	ENSGT00940000155762.`c.a #25	ENSGT00390000000263 #26	ENSGT00940000157155 #27	ENSGT00390000015492.B #28	ENSGT00530000063106.A #30	ENSGT00950000183063.c.b.a.g.a.c	ENSGT00950000183063.c.b.a.g.b	ENSGT00940000157673	ENSGT00940000157183.a.b	ENSGT00940000159794	ENSGT00940000160041	ENSGT00940000154694	ENSGT00390000012058.c.a
Marmotini_b	ANCESTRAL SPECIES	41	ENSGT00390000001015	ENSGT00940000160895 #7	ENSGT00510000050180 #8	ENSGT00940000155124 #9	ENSGT00940000162129.d.s.b #11	ENSGT00940000162212 #12	ENSGT00940000162129.d.t ##13	ENSGT00390000004360.a.b.b #14	ENSGT00950000183115.a #15	ENSGT01040000240444.A.b.a.a #16	ENSGT00390000003032 #17	ENSGT00390000003006 #18	ENSGT00940000153386.A #19	ENSGT01050000244937.a.b.b #20	ENSGT00390000018026 #21	ENSGT00940000157606 #22	ENSGT00940000157437 #23	ENSGT01100000263484.A.c.a.a #24	ENSGT00940000155762.`c.a #25	ENSGT00390000000263 #26	ENSGT00940000157155 #27	ENSGT00390000015492.B #28	ENSGT00530000063106.A #30	ENSGT00950000183063.c.b.a.g.a.c	ENSGT00950000183063.c.b.a.g.b	ENSGT00940000157673	ENSGT00940000157183.a.b	ENSGT00940000159794	ENSGT00940000160041	ENSGT00940000154694	ENSGT00390000012058.c.a
Arctic ground squirrel	MODERN SPECIES	169	SLC16A14 (ENSUPAG00010004779) #7	ENSUPAG00010004788 #8	ENSUPAG00010004794 #9	ENSUPAG00010004804 #10	ENSUPAG00010004810 #11	ENSUPAG00010004816 #12	ENSUPAG00010004832 #13	CAB39 (ENSUPAG00010004840) #14	ITM2C (ENSUPAG00010004854) #15	GPR55 (ENSUPAG00010004871) #16	SPATA3 (ENSUPAG00010004876) #17	C2orf72 (ENSUPAG00010004885) #18	PSMD1 (ENSUPAG00010004890) #19	HTR2B (ENSUPAG00010004952) #20	ARMC9 (ENSUPAG00010004958) #21	B3GNT7 (ENSUPAG00010005006) #22	NCL (ENSUPAG00010005009) #23	NMUR1 (ENSUPAG00010005026) #24	PTMA (ENSUPAG00010005034) #25	PDE6D (ENSUPAG00010005053) #26	COPS7B (ENSUPAG00010005061) #27	NPPC (ENSUPAG00010005072) #28	ENSUPAG00010005078 #29	DIS3L2 (ENSUPAG00010005084) #30
Squirrel	MODERN SPECIES	125	TRIP12 (ENSSTOG00000014937)	FBXO36 (ENSSTOG00000010041)	SLC16A14 (ENSSTOG00000023049) #7	ENSSTOG00000027040 #9	ENSSTOG00000005247 #11	ENSSTOG00000005264 #12	ENSSTOG00000025756 ##13	CAB39 (ENSSTOG00000028896) #14	ITM2C (ENSSTOG00000009342) #15	GPR55 (ENSSTOG00000002443) #16	ENSSTOG00000023805	SPATA3 (ENSSTOG00000031451) #17	HTR2B (ENSSTOG00000009378) #20	PSMD1 (ENSSTOG00000009344) #19	ARMC9 (ENSSTOG00000008474) #21	B3GNT7 (ENSSTOG00000000196) #22	NMUR1 (ENSSTOG00000019555) #24	ENSSTOG00000034295 #25	PDE6D (ENSSTOG00000006196) #26	COPS7B (ENSSTOG00000022276) #27	NPPC (ENSSTOG00000027741) #28	ENSSTOG00000022984	DIS3L2 (ENSSTOG00000005668) #30	ENSSTOG00000024416	ENSSTOG00000005441	ENSSTOG00000005478	ECEL1 (ENSSTOG00000005389)	PRSS56 (ENSSTOG00000021941)	CHRND (ENSSTOG00000003464)	CHRNG (ENSSTOG00000003488)	EIF4E2 (ENSSTOG00000003508)
Alpin marmot	MODERN SPECIES	8	ENSMMMG00000001162 #8	ENSMMMG00000001172 #9	ENSMMMG00000001201 #11	ENSMMMG00000001221 #11	ENSMMMG00000001242 #12	ENSMMMG00000001250	ENSMMMG00000001285 #13	CAB39 (ENSMMMG00000001293) #14	ITM2C (ENSMMMG00000001305) #15	GPR55 (ENSMMMG00000001312) #16	ENSMMMG00000001341 #17	PSMD1 (ENSMMMG00000001400) #19	HTR2B (ENSMMMG00000001431) #20	ENSMMMG00000001440	ARMC9 (ENSMMMG00000001453) #21	B3GNT7 (ENSMMMG00000001597) #22	NCL (ENSMMMG00000001601) #23	NMUR1 (ENSMMMG00000001655) #24	PDE6D (ENSMMMG00000001702) #26	COPS7B (ENSMMMG00000001727) #27	NPPC (ENSMMMG00000001745) #28	DIS3L2 (ENSMMMG00000001761) #30	ENSMMMG00000001848	ENSMMMG00000001904	ENSMMMG00000001927	ENSMMMG00000002016	PRSS56 (ENSMMMG00000002024)	CHRND (ENSMMMG00000002047)	CHRNG (ENSMMMG00000002089)	EIF4E2 (ENSMMMG00000002124)	EFHD1 (ENSMMMG00000002254)
Eurasian red squirrel	MODERN SPECIES	12	ENSSVLG00005012123 #7	ENSSVLG00005012200 #8	ENSSVLG00005012253 #9	ENSSVLG00005012297 #11	ENSSVLG00005012384 #11	ENSSVLG00005012442 #12	ENSSVLG00005012482	CAB39 (ENSSVLG00005012531) #14	ITM2C (ENSSVLG00005012584) #15	GPR55 (ENSSVLG00005012653) #16	ENSSVLG00005012681 #17	C2orf72 (ENSSVLG00005012755) #18	PSMD1 (ENSSVLG00005012861) #19	HTR2B (ENSSVLG00005013070) #20	ARMC9 (ENSSVLG00005013338) #21	B3GNT7 (ENSSVLG00005013469) #22	ENSSVLG00005013597 #23	NMUR1 (ENSSVLG00005013834) #24	ENSSVLG00005013861	PDE6D (ENSSVLG00005014039) #26	COPS7B (ENSSVLG00005014135) #27	NPPC (ENSSVLG00005014279) #28	DIS3L2 (ENSSVLG00005014337) #30	ENSSVLG00005014581	ENSSVLG00005014716	ENSSVLG00005014847	ENSSVLG00005014965	ECEL1 (ENSSVLG00005015117)	PRSS56 (ENSSVLG00005015425)	CHRND (ENSSVLG00005015554)	CHRNG (ENSSVLG00005015809)
Hystricomorpha	ANCESTRAL SPECIES	28	ENSGT00390000001015	ENSGT00940000160895 #7	ENSGT00510000050180 #8	ENSGT00940000155124 #9	ENSGT00940000162129.d.t ##13	ENSGT00940000162212 #12	ENSGT00390000004360.a.b.b #14	ENSGT00950000183115.a #15	ENSGT01040000240444.A.b.a.a #16	ENSGT00390000003032 #17	ENSGT00390000003006 #18	ENSGT00940000153386.A.a #19	ENSGT01050000244937.a.b.b #20	ENSGT00940000153386.A.b #19	ENSGT00390000018026 #21	ENSGT00940000157606 #22	ENSGT00940000157437 #23	ENSGT01100000263484.A.c.a.a #24	ENSGT00940000155762.`c.b ##25	ENSGT00390000000263 #26	ENSGT00940000157155 #27	ENSGT00390000015492.B #28	ENSGT00530000063106.A #30	ENSGT00950000183063.c.b.a.h.a.b	ENSGT00950000183063.c.b.a.h.b	ENSGT00940000157673	ENSGT00940000157183.a.b	ENSGT00940000159794	ENSGT00940000160041	ENSGT00940000154694	ENSGT00390000012058.c.a
Hystricomorpha_a	ANCESTRAL SPECIES	32	ENSGT00940000156517	ENSGT00390000001015	ENSGT00940000160895 #7	ENSGT00510000050180 #8	ENSGT00940000155124 #9	ENSGT00940000162129.d.t ##13	ENSGT00940000162212 #12	ENSGT00390000004360.a.b.b #14	ENSGT00950000183115.a #15	ENSGT01040000240444.A.b.a.a #16	ENSGT00390000003032 #17	ENSGT00940000153386.A.a #19	ENSGT01050000244937.a.b.b #20	ENSGT00940000153386.A.b #19	ENSGT00390000018026 #21	ENSGT00940000157606 #22	ENSGT00940000157437 #23	ENSGT01100000263484.A.c.a.a #24	ENSGT00940000155762.`c.b ##25	ENSGT00390000000263 #26	ENSGT00940000157155 #27	ENSGT00390000015492.B #28	ENSGT00530000063106.A #30	ENSGT00950000183063.c.b.a.h.a.b	ENSGT00950000183063.c.b.a.h.a.a	ENSGT00950000183063.c.b.a.h.b	ENSGT00940000157673	ENSGT00940000157183.a.b	ENSGT00940000159794	ENSGT00940000160041	ENSGT00940000154694
Guinea pig	MODERN SPECIES	13	DNER (ENSCPOG00000011551)	TRIP12 (ENSCPOG00000007990)	FBXO36 (ENSCPOG00000025378)	SLC16A14 (ENSCPOG00000034941) #7	ENSCPOG00000020462 #8	ENSCPOG00000025399 #9	ENSCPOG00000010544 ##13	ENSCPOG00000038210 #12	CAB39 (ENSCPOG00000032166) #14	ITM2C (ENSCPOG00000012713) #15	GPR55 (ENSCPOG00000004832) #16	SPATA3 (ENSCPOG00000006558) #17	HTR2B (ENSCPOG00000000433) #20	PSMD1 (ENSCPOG00000000431) #19	ARMC9 (ENSCPOG00000008938) #21	B3GNT7 (ENSCPOG00000002351) #22	NCL (ENSCPOG00000001034) #23	ENSCPOG00000005181 #24	ENSCPOG00000022634	PDE6D (ENSCPOG00000037612) #26	COPS7B (ENSCPOG00000020577) #27	NPPC (ENSCPOG00000027589) #28	DIS3L2 (ENSCPOG00000005205) #30	ENSCPOG00000025911	ENSCPOG00000012222	ECEL1 (ENSCPOG00000004617)	PRSS56 (ENSCPOG00000038726)	CHRND (ENSCPOG00000005665)	CHRNG (ENSCPOG00000020372)	EIF4E2 (ENSCPOG00000005668)	EFHD1 (ENSCPOG00000026337)
Hystricomorpha_b	ANCESTRAL SPECIES	28	ENSGT00940000156517	ENSGT00390000001015	ENSGT00940000160895 #7	ENSGT00510000050180 #8	ENSGT00940000155124 #9	ENSGT00940000162129.d.t ##13	ENSGT00940000162212 #12	ENSGT00390000004360.a.b.b #14	ENSGT00950000183115.a #15	ENSGT01040000240444.A.b.a.a #16	ENSGT00390000003032 #17	ENSGT00940000153386.A.a #19	ENSGT01050000244937.a.b.b #20	ENSGT00940000153386.A.b #19	ENSGT00390000018026 #21	ENSGT00940000157606 #22	ENSGT00940000157437 #23	ENSGT01100000263484.A.c.a.a #24	ENSGT00940000155762.`c.b ##25	ENSGT00390000000263 #26	ENSGT00940000157155 #27	ENSGT00390000015492.B #28	ENSGT00530000063106.A #30	ENSGT00950000183063.c.b.a.h.a.b	ENSGT00950000183063.c.b.a.h.a.a	ENSGT00950000183063.c.b.a.h.b	ENSGT00940000157673	ENSGT00940000157183.a.b	ENSGT00940000159794	ENSGT00940000160041	ENSGT00940000154694
Degu	MODERN SPECIES	130	PID1 (ENSODEG00000008905)	DNER (ENSODEG00000006981)	ENSODEG00000007427	TRIP12 (ENSODEG00000009098)	SLC16A14 (ENSODEG00000007138) #7	ENSODEG00000007283 #9	ENSODEG00000010013 ##13	ENSODEG00000006353 #12	CAB39 (ENSODEG00000006973) #14	ITM2C (ENSODEG00000007143) #15	ENSODEG00000019367	SPATA3 (ENSODEG00000006991) #17	ENSODEG00000006511 #19	HTR2B (ENSODEG00000007544) #20	ARMC9 (ENSODEG00000008401) #21	B3GNT7 (ENSODEG00000008876) #22	ENSODEG00000007803 #23	NMUR1 (ENSODEG00000006998) #24	ENSODEG00000007492 ##25	ENSODEG00000006860 #26	COPS7B (ENSODEG00000006886) #27	NPPC (ENSODEG00000007066) #28	ENSODEG00000019419	DIS3L2 (ENSODEG00000007857) #30	ENSODEG00000007255	ENSODEG00000007325	ENSODEG00000008145	ENSODEG00000011365	ECEL1 (ENSODEG00000007457)	PRSS56 (ENSODEG00000007807)	CHRND (ENSODEG00000007466)
Long-tailed chinchilla	MODERN SPECIES	160	ENSCLAG00000006844	FBXO36 (ENSCLAG00000009490)	SLC16A14 (ENSCLAG00000008363) #7	ENSCLAG00000011634 #8	ENSCLAG00000011459	ENSCLAG00000013705 #9	ENSCLAG00000012221 ##13	ENSCLAG00000012838 #12	CAB39 (ENSCLAG00000007339) #14	ITM2C (ENSCLAG00000006596) #15	GPR55 (ENSCLAG00000014005) #16	SPATA3 (ENSCLAG00000013092) #17	HTR2B (ENSCLAG00000011693) #20	PSMD1 (ENSCLAG00000009721) #19	ARMC9 (ENSCLAG00000014505) #21	B3GNT7 (ENSCLAG00000018090) #22	NCL (ENSCLAG00000013080) #23	NMUR1 (ENSCLAG00000011387) #24	ENSCLAG00000014992	ENSCLAG00000011106 #26	COPS7B (ENSCLAG00000009412) #27	NPPC (ENSCLAG00000014093) #28	DIS3L2 (ENSCLAG00000010200) #30	ENSCLAG00000008695	ENSCLAG00000007115	ENSCLAG00000013522	ENSCLAG00000009805	ENSCLAG00000008842	PRSS56 (ENSCLAG00000007988)	CHRND (ENSCLAG00000014396)	CHRNG (ENSCLAG00000008928)
Naked mole-rat female	MODERN SPECIES	17	ENSHGLG00000006168	ENSHGLG00000020453	TRIP12 (ENSHGLG00000008889)	FBXO36 (ENSHGLG00000002884)	SLC16A14 (ENSHGLG00000002999) #7	ENSHGLG00000032383 ##13	SP100 (ENSHGLG00000003347) #12	CAB39 (ENSHGLG00000035528) #14	ITM2C (ENSHGLG00000003561) #15	GPR55 (ENSHGLG00000002371) #16	SPATA3 (ENSHGLG00000002652) #17	C2orf72 (ENSHGLG00000002913) #18	PSMD1 (ENSHGLG00000003111) #19	HTR2B (ENSHGLG00000001546) #20	ARMC9 (ENSHGLG00000001678) #21	B3GNT7 (ENSHGLG00000035064) #22	ENSHGLG00000002031 #23	ENSHGLG00000001426	ENSHGLG00000001587 ##25	PDE6D (ENSHGLG00000001979) #26	ENSHGLG00000002311 #27	NPPC (ENSHGLG00000002343) #28	DIS3L2 (ENSHGLG00000002429) #30	ENSHGLG00000020731	ENSHGLG00000002859	ENSHGLG00000003323	ENSHGLG00000003716	ECEL1 (ENSHGLG00000004027)	PRSS56 (ENSHGLG00000004901)	CHRND (ENSHGLG00000006318)	CHRNG (ENSHGLG00000002147)