Murinae	ANCESTRAL SPECIES	35	ENSGT00940000162479	ENSGT00510000049560 #8	ENSGT00940000155360.B #9	ENSGT00940000156564 #11	ENSGT00940000155401.j #12	ENSGT00390000006347.b #13	ENSGT00390000000917 #14	ENSGT00940000161024 #15	ENSGT00940000157234	ENSGT00940000157678 #17	ENSGT00940000161407 #18	ENSGT00940000158920 #19	ENSGT00940000157536.b #20	ENSGT01030000238791	ENSGT00940000158114 #21	ENSGT00860000133881 #22	ENSGT00940000155696 #23	ENSGT00730000111249 #24	ENSGT00940000155868 #26	ENSGT00950000182808.a.a.a.a.a #27	ENSGT00940000161310 #28
Mus	ANCESTRAL SPECIES	6	ENSGT00860000135683 #7	ENSGT00510000049560 #8	ENSGT00940000155360.B #9	ENSGT00940000156564 #11	ENSGT00940000155401.j #12	ENSGT00390000006347.b #13	ENSGT00390000000917 #14	ENSGT00940000161024 #15	ENSGT00940000157234	ENSGT00940000157678 #17	ENSGT00940000161407 #18	ENSGT00940000158920 #19	ENSGT00940000157536.b #20	ENSGT01030000238791	ENSGT00940000158114 #21	ENSGT00860000133881 #22	ENSGT00940000155696 #23	ENSGT00730000111249 #24	ENSGT00940000155868 #26	ENSGT00950000182808.a.a.a.a.a #27	ENSGT00940000161310 #28	ENSGT01030000234515.a.b.b #31	ENSGT01010000222539 #32	ENSGT00940000155528 #33	ENSGT00390000000051 #34	ENSGT00940000154412.C #35	ENSGT00390000017407 #36	ENSGT00530000063861.a #37	ENSGT00940000158914	ENSGT00940000159311.c	ENSGT00940000154382.a.a
Mus_A	ANCESTRAL SPECIES	8	ENSGT00860000135683 #7	ENSGT00510000049560 #8	ENSGT00940000155360.B #9	ENSGT00940000156564 #11	ENSGT00940000155401.j #12	ENSGT00390000006347.b #13	ENSGT00390000000917 #14	ENSGT00940000161024 #15	ENSGT00940000157234	ENSGT00940000157678 #17	ENSGT00940000161407 #18	ENSGT00940000158920 #19	ENSGT00940000157536.b #20	ENSGT01030000238791	ENSGT00940000158114 #21	ENSGT00860000133881 #22	ENSGT00940000155696 #23	ENSGT00730000111249 #24	ENSGT00900000143557 #25	ENSGT00940000155868 #26	ENSGT00950000182808.a.a.a.a.a #27	ENSGT00940000161310 #28	ENSGT01030000234515.a.b.b #31	ENSGT01010000222539 #32	ENSGT00940000155528 #33	ENSGT00390000000051 #34	ENSGT00940000154412.C #35	ENSGT00390000017407 #36	ENSGT00530000063861.a #37	ENSGT00940000158914	ENSGT00940000159311.c
Mus_B	ANCESTRAL SPECIES	6	ENSGT00860000135683 #7	ENSGT00510000049560 #8	ENSGT00940000155360.B #9	ENSGT00940000156564 #11	ENSGT00940000155401.j #12	ENSGT00390000006347.b #13	ENSGT00390000000917 #14	ENSGT00940000161024 #15	ENSGT00940000157234	ENSGT00940000157678 #17	ENSGT00940000161407 #18	ENSGT00940000158920 #19	ENSGT00940000157536.b #20	ENSGT01030000238791	ENSGT00940000158114 #21	ENSGT00860000133881 #22	ENSGT00940000155696 #23	ENSGT00730000111249 #24	ENSGT00900000143557 #25	ENSGT00940000155868 #26	ENSGT00950000182808.a.a.a.a.a #27	ENSGT00940000161310 #28	ENSGT00940000153805.q.b.a.a.b.a.a #30	ENSGT01030000234515.a.b.b #31	ENSGT01010000222539 #32	ENSGT00940000155528 #33	ENSGT00390000000051 #34	ENSGT00940000154412.C #35	ENSGT00390000017407 #36	ENSGT00530000063861.a #37	ENSGT00940000158914
Mus_C	ANCESTRAL SPECIES	5	ENSGT00860000135683 #7	ENSGT00510000049560 #8	ENSGT00940000155360.B #9	ENSGT00940000156564 #11	ENSGT00940000155401.j #12	ENSGT00390000006347.b #13	ENSGT00390000000917 #14	ENSGT00940000161024 #15	ENSGT00940000157234	ENSGT00940000157678 #17	ENSGT00940000161407 #18	ENSGT00940000158920 #19	ENSGT00940000157536.b #20	ENSGT01030000238791	ENSGT00940000158114 #21	ENSGT00860000133881 #22	ENSGT00940000155696 #23	ENSGT00730000111249 #24	ENSGT00900000143557 #25	ENSGT00940000155868 #26	ENSGT00950000182808.a.a.a.a.a #27	ENSGT00940000161310 #28	ENSGT00940000153805.q.b.a.a.b.a.a #30	ENSGT01030000234515.a.b.b #31	ENSGT01010000222539 #32	ENSGT00940000155528 #33	ENSGT00390000000051 #34	ENSGT00940000154412.C #35	ENSGT00390000017407 #36	ENSGT00530000063861.a #37	ENSGT00940000158914
spretus	MODERN SPECIES	17	MGP_SPRETEiJ_G0031932 #7	Tex29 (MGP_SPRETEiJ_G0031931) #8	Arhgef7 (MGP_SPRETEiJ_G0031930) #9	Spaca7b (MGP_SPRETEiJ_G0031929) #10	Ankrd10 (MGP_SPRETEiJ_G0031928) #11	Ing1 (MGP_SPRETEiJ_G0031927) #12	Cars2 (MGP_SPRETEiJ_G0031926) #13	Naxd (MGP_SPRETEiJ_G0031925) #14	Rab20 (MGP_SPRETEiJ_G0031924) #15	MGP_SPRETEiJ_G0031923 #16	Col4a1 (MGP_SPRETEiJ_G0031922) #17	Irs2 (MGP_SPRETEiJ_G0031921) #18	Myo16 (MGP_SPRETEiJ_G0031920) #19	Tnfsf13b (MGP_SPRETEiJ_G0031919) #20	Abhd13 (MGP_SPRETEiJ_G0031918) #21	Lig4 (MGP_SPRETEiJ_G0031917) #22	Nalf1 (MGP_SPRETEiJ_G0031916) #23	Arglu1 (MGP_SPRETEiJ_G0031915) #24	MGP_SPRETEiJ_G0031914 #25	Efnb2 (MGP_SPRETEiJ_G0031913) #26	Slc10a2 (MGP_SPRETEiJ_G0031912) #27	Shcbp1 (MGP_SPRETEiJ_G0031911) #28	MGP_SPRETEiJ_G0031910 #29	Zfp958 (MGP_SPRETEiJ_G0031909) #30	Cers4 (MGP_SPRETEiJ_G0031908) #31	Ccl25 (MGP_SPRETEiJ_G0031907) #32	Elavl1 (MGP_SPRETEiJ_G0031906) #33	Timm44 (MGP_SPRETEiJ_G0031905) #34	Ctxn1 (MGP_SPRETEiJ_G0031904) #35	Snapc2 (MGP_SPRETEiJ_G0031903) #36	Tgfbr3l (MGP_SPRETEiJ_G0031902) #37
Steppe mouse	MODERN SPECIES	3344	ENSMSIG00000009432	Spaca7b (ENSMSIG00000009444) #10	Ankrd10 (ENSMSIG00000009467) #11	Ing1 (ENSMSIG00000009535) #12	Cars2 (ENSMSIG00000009552) #13	Naxd (ENSMSIG00000009660) #14	ENSMSIG00000009712 #15	Col4a2 (ENSMSIG00000009721)	Col4a1 (ENSMSIG00000009816) #17	Irs2 (ENSMSIG00000009943) #18	ENSMSIG00000009966	Myo16 (ENSMSIG00000009985) #19	Tnfsf13b (ENSMSIG00000010107) #20	ENSMSIG00000010201	Abhd13 (ENSMSIG00000010206) #21	Lig4 (ENSMSIG00000010213) #22	Nalf1 (ENSMSIG00000010229) #23	Arglu1 (ENSMSIG00000010263) #24	ENSMSIG00000010282 #25	Efnb2 (ENSMSIG00000010294) #26
Mouse	MODERN SPECIES	17	Sox1 (ENSMUSG00000096014)	Tex29 (ENSMUSG00000031512) #8	Arhgef7 (ENSMUSG00000031511) #9	Spaca7b (ENSMUSG00000031509) #10	Ankrd10 (ENSMUSG00000031508) #11	Ing1 (ENSMUSG00000045969) #12	Cars2 (ENSMUSG00000056228) #13	Naxd (ENSMUSG00000031505) #14	Rab20 (ENSMUSG00000031504) #15	Col4a2 (ENSMUSG00000031503)	Col4a1 (ENSMUSG00000031502) #17	Irs2 (ENSMUSG00000038894) #18	Myo16 (ENSMUSG00000039057) #19	Tnfsf13b (ENSMUSG00000031497) #20	Abhd13 (ENSMUSG00000040396) #21	Lig4 (ENSMUSG00000049717) #22	Nalf1 (ENSMUSG00000079157) #23	Arglu1 (ENSMUSG00000040459) #24	Efnb2 (ENSMUSG00000001300) #26	Slc10a2 (ENSMUSG00000023073) #27	Shcbp1 (ENSMUSG00000022322) #28	Zfp958 (ENSMUSG00000058748) #30	Cers4 (ENSMUSG00000008206) #31	Ccl25 (ENSMUSG00000023235) #32	Elavl1 (ENSMUSG00000040028) #33	Timm44 (ENSMUSG00000002949) #34	Ctxn1 (ENSMUSG00000048644) #35	Snapc2 (ENSMUSG00000011837) #36	Tgfbr3l (ENSMUSG00000089736) #37	Map2k7 (ENSMUSG00000002948)	Lrrc8e (ENSMUSG00000046589)
Ryukyu mouse	MODERN SPECIES	17	Sox1 (MGP_CAROLIEiJ_G0030824)	MGP_CAROLIEiJ_G0030823 #7	MGP_CAROLIEiJ_G0030822 #8	MGP_CAROLIEiJ_G0030821 #9	MGP_CAROLIEiJ_G0030820 #10	Ing1 (MGP_CAROLIEiJ_G0030819) #12	Cars2 (MGP_CAROLIEiJ_G0030818) #13	Naxd (MGP_CAROLIEiJ_G0030817) #14	Rab20 (MGP_CAROLIEiJ_G0030816) #15	Col4a2 (MGP_CAROLIEiJ_G0030815)	Col4a1 (MGP_CAROLIEiJ_G0030814) #17	Irs2 (MGP_CAROLIEiJ_G0030813) #18	Myo16 (MGP_CAROLIEiJ_G0030812) #19	Tnfsf13b (MGP_CAROLIEiJ_G0030811) #20	Abhd13 (MGP_CAROLIEiJ_G0030810) #21	Lig4 (MGP_CAROLIEiJ_G0030809) #22	Nalf1 (MGP_CAROLIEiJ_G0030808) #23	Arglu1 (MGP_CAROLIEiJ_G0030807) #24	MGP_CAROLIEiJ_G0030806 #25	Efnb2 (MGP_CAROLIEiJ_G0030805) #26	Slc10a2 (MGP_CAROLIEiJ_G0030804) #27	MGP_CAROLIEiJ_G0030803	Shcbp1 (MGP_CAROLIEiJ_G0030802) #28	MGP_CAROLIEiJ_G0030801 ##30	Cers4 (MGP_CAROLIEiJ_G0030800) #31	MGP_CAROLIEiJ_G0030799 #32	Elavl1 (MGP_CAROLIEiJ_G0030798) #33	Timm44 (MGP_CAROLIEiJ_G0030797) #34	Ctxn1 (MGP_CAROLIEiJ_G0030796) #35	Snapc2 (MGP_CAROLIEiJ_G0030795) #36	Tgfbr3l (MGP_CAROLIEiJ_G0030794) #37
Shrew mouse	MODERN SPECIES	10	MGP_PahariEiJ_G0021285 #7	MGP_PahariEiJ_G0021284 #8	Arhgef7 (MGP_PahariEiJ_G0021283) #9	Spaca7b (MGP_PahariEiJ_G0021282) #10	Ankrd10 (MGP_PahariEiJ_G0021281) #11	Ing1 (MGP_PahariEiJ_G0021280) #12	Cars2 (MGP_PahariEiJ_G0021279) #13	Naxd (MGP_PahariEiJ_G0021278) #14	Rab20 (MGP_PahariEiJ_G0021277) #15	Col4a2 (MGP_PahariEiJ_G0021276)	Col4a1 (MGP_PahariEiJ_G0021275) #17	Irs2 (MGP_PahariEiJ_G0021274) #18	Myo16 (MGP_PahariEiJ_G0021273) #19	Tnfsf13b (MGP_PahariEiJ_G0021272) #20	Abhd13 (MGP_PahariEiJ_G0021271) #21	Lig4 (MGP_PahariEiJ_G0021270) #22	Nalf1 (MGP_PahariEiJ_G0021269) #23	Arglu1 (MGP_PahariEiJ_G0021268) #24	MGP_PahariEiJ_G0021267	Efnb2 (MGP_PahariEiJ_G0021266) #26	Slc10a2 (MGP_PahariEiJ_G0021265) #27	Shcbp1 (MGP_PahariEiJ_G0021264) #28	Cers4 (MGP_PahariEiJ_G0021263) #31	MGP_PahariEiJ_G0021262 #32	Elavl1 (MGP_PahariEiJ_G0021261) #33	Timm44 (MGP_PahariEiJ_G0021260) #34	Ctxn1 (MGP_PahariEiJ_G0021259) #35	Tgfbr3l (MGP_PahariEiJ_G0021258) #37	Map2k7 (MGP_PahariEiJ_G0021257)	Lrrc8e (MGP_PahariEiJ_G0021256)	Prr36 (MGP_PahariEiJ_G0021255)
Rat	MODERN SPECIES	7	AABR07026557.1 (ENSRNOG00000053136) #10	Ankrd10 (ENSRNOG00000064616) #11	Ing1 (ENSRNOG00000014520) ##12	Cars2 (ENSRNOG00000014526) #13	Naxd (ENSRNOG00000015021) #14	Rab20 (ENSRNOG00000023991) #15	Col4a2 (ENSRNOG00000023972)	Col4a1 (ENSRNOG00000016281) #17	Irs2 (ENSRNOG00000023509) #18	ENSRNOG00000063036	LOC689713 (ENSRNOG00000033703)	Myo16 (ENSRNOG00000016483) #19	Tnfsf13b (ENSRNOG00000014464) #20	AABR07026596.2 (ENSRNOG00000055140)	Abhd13 (ENSRNOG00000014598) #21	Lig4 (ENSRNOG00000014605) #22	Nalf1 (ENSRNOG00000066120) #23	Arglu1 (ENSRNOG00000024142) #24	Efnb2 (ENSRNOG00000064362) #26	Pdha1l1 (ENSRNOG00000014745)	Slc10a2 (ENSRNOG00000037753) #27	ENSRNOG00000062801 #27	ENSRNOG00000064130	ENSRNOG00000069339	Shcbp1 (ENSRNOG00000053026) #28