Mus_A	ANCESTRAL SPECIES	17	ENSGT00860000135815	ENSGT00550000074847	ENSGT00940000155018.a.a	ENSGT00940000155018.b	ENSGT00510000047895	ENSGT00940000159462	ENSGT00940000161611	ENSGT00940000164621	ENSGT00940000154493.a.a	ENSGT00940000154493.a.b	ENSGT00940000162010	ENSGT00940000162880	ENSGT00940000161977	ENSGT00940000162217	ENSGT00940000154392.g.a.b.b #21	ENSGT00940000154392.g.a.b.a.b #22	ENSGT00940000154392.g.a.b.a.a #28	ENSGT00940000160635 #29	ENSGT00800000125274 #30	ENSGT00940000156287 #31	ENSGT00940000159056 #32	ENSGT00900000143400	ENSGT00440000039367 #33	ENSGT00550000075082 #34	ENSGT00390000006885.b.b.d.a #36	ENSGT00390000006885.b.a ##36	ENSGT01020000230647	ENSGT00700000106116	ENSGT01030000234534.A.c.b	ENSGT00910000147588	ENSGT01030000234534.A.c.a
Mus_B	ANCESTRAL SPECIES	17	ENSGT00860000135815	ENSGT00550000074847	ENSGT00940000155018.a.a	ENSGT00940000155018.b	ENSGT00510000047895	ENSGT00940000159462	ENSGT00940000161611	ENSGT00940000164621	ENSGT00940000154493.a.a	ENSGT00940000154493.a.b	ENSGT00940000162010	ENSGT00940000162880	ENSGT00940000161977	ENSGT00940000162217	ENSGT00940000154392.g.a.b.b #21	ENSGT00940000154392.g.a.b.a.b #22	ENSGT00940000154392.g.b.c.a #23	ENSGT00940000154392.h.a.a.a ##28	ENSGT00940000160877 #19	ENSGT00940000154392.g.b.d.a.b #20	ENSGT00940000154392.g.a.a ##28	ENSGT00940000160635 #29	ENSGT00800000125274 #30	ENSGT00940000156287 #31	ENSGT00940000159056 #32	ENSGT00900000143400	ENSGT00440000039367 #33	ENSGT00550000075082 #34	ENSGT00390000006885.b.b.d.a #36	ENSGT00390000006885.b.a ##36	ENSGT01020000230647
Mus_C	ANCESTRAL SPECIES	11	ENSGT00860000135815	ENSGT00550000074847	ENSGT00940000155018.a.a	ENSGT00940000155018.b	ENSGT00510000047895	ENSGT00940000159462	ENSGT00940000161611	ENSGT00940000164621	ENSGT00940000154493.a.a	ENSGT00940000154493.a.b	ENSGT00940000162010	ENSGT00940000162880	ENSGT00940000161977	ENSGT00940000162217	ENSGT00940000154392.g.a.b.b #21	ENSGT00940000154392.g.a.b.a.b #22	ENSGT00940000154392.g.b.c.a #23	ENSGT00940000154392.h.a.a.a ##28	ENSGT00940000160877 #19	ENSGT00940000154392.g.b.d.a.b #20	ENSGT00940000160635 #29	ENSGT00800000125274 #30	ENSGT00940000156287 #31	ENSGT00940000159056 #32	ENSGT00900000143400	ENSGT00440000039367 #33	ENSGT00550000075082 #34	ENSGT00390000006885.b.b.d.a #36	ENSGT00390000006885.b.a ##36	ENSGT00700000106116	ENSGT01030000234534.A.c.b
Steppe mouse	MODERN SPECIES	2854													ENSMSIG00000011843 #19	Serpina3m (ENSMSIG00000011868) #20	Serpina3a (ENSMSIG00000011911) #21	Serpina3b (ENSMSIG00000011927) #22	ENSMSIG00000011934 #23	ENSMSIG00000011942 #24	Serpina3i (ENSMSIG00000011979) #25	Serpina3j (ENSMSIG00000011989) #26	ENSMSIG00000012016 #27	ENSMSIG00000012023 #28	ENSMSIG00000012040 #29	ENSMSIG00000012046 #30	Dicer1 (ENSMSIG00000012054) #31	Clmn (ENSMSIG00000012135) #32	Syne3 (ENSMSIG00000012182) #33	Glrx5 (ENSMSIG00000012449) #34	ENSMSIG00000012458 #35	ENSMSIG00000012474 #36
spretus	MODERN SPECIES	3	Ifi27l2a (MGP_SPRETEiJ_G0018900)	Ppp4r4 (MGP_SPRETEiJ_G0018901)	Serpina10 (MGP_SPRETEiJ_G0018902)	Serpina6 (MGP_SPRETEiJ_G0018903)	Serpina16 (MGP_SPRETEiJ_G0018904)	Serpina1f (MGP_SPRETEiJ_G0018905)	MGP_SPRETEiJ_G0018908	MGP_SPRETEiJ_G0018909	MGP_SPRETEiJ_G0018907	MGP_SPRETEiJ_G0018910	Serpina11 (MGP_SPRETEiJ_G0018911)	Serpina9 (MGP_SPRETEiJ_G0018912)	Serpina12 (MGP_SPRETEiJ_G0018913)	Serpina5 (MGP_SPRETEiJ_G0018914)	MGP_SPRETEiJ_G0018915 #21	Serpina3b (MGP_SPRETEiJ_G0018916) #22	MGP_SPRETEiJ_G0018917 #23	MGP_SPRETEiJ_G0018918 ##28	MGP_SPRETEiJ_G0018919 ##28	MGP_SPRETEiJ_G0018920 ##28	MGP_SPRETEiJ_G0018921 ##28	Serpina3k (MGP_SPRETEiJ_G0018922) ##28	MGP_SPRETEiJ_G0018923 #27	Serpina3m (MGP_SPRETEiJ_G0018924) #20	Serpina3n (MGP_SPRETEiJ_G0018925) ##28	Gsc (MGP_SPRETEiJ_G0018926) #29	MGP_SPRETEiJ_G0018927 #30	Dicer1 (MGP_SPRETEiJ_G0018928) #31	Clmn (MGP_SPRETEiJ_G0018929) #32	MGP_SPRETEiJ_G0018930	Syne3 (MGP_SPRETEiJ_G0018931) #33
Mouse	MODERN SPECIES	3	Ppp4r4 (ENSMUSG00000021209)	Serpina10 (ENSMUSG00000061947)	Serpina6 (ENSMUSG00000060807)	Serpina16 (ENSMUSG00000071179)	Serpina1f (ENSMUSG00000021081)	Serpina1b (ENSMUSG00000071178)	Serpina1d (ENSMUSG00000071177)	Serpina1a (ENSMUSG00000066366)	Serpina1c (ENSMUSG00000079015)	Serpina1e (ENSMUSG00000072849)	Serpina11 (ENSMUSG00000063232)	Serpina9 (ENSMUSG00000058260)	Serpina12 (ENSMUSG00000041567)	Serpina5 (ENSMUSG00000041550)	Serpina3a (ENSMUSG00000041536) #21	Serpina3b (ENSMUSG00000066364) #22	Serpina3c (ENSMUSG00000066361) #23	Serpina3f (ENSMUSG00000066363) ##28	Serpina3g (ENSMUSG00000041481) ##28	Serpina3i (ENSMUSG00000079014) #25	Serpina3j (ENSMUSG00000079013) #26	Serpina3k (ENSMUSG00000058207) ##28	Serpina3m (ENSMUSG00000079012) #20	Serpina3n (ENSMUSG00000021091) ##28	Gsc (ENSMUSG00000021095) #29	Dicer1 (ENSMUSG00000041415) #31	Clmn (ENSMUSG00000021097) #32	Syne3 (ENSMUSG00000054150) #33	Glrx5 (ENSMUSG00000021102) #34	Tcl1b2 (ENSMUSG00000060863) ##36	Tcl1b1 (ENSMUSG00000066359) ##36
Ryukyu mouse	MODERN SPECIES	3	Ppp4r4 (MGP_CAROLIEiJ_G0018056)	Serpina10 (MGP_CAROLIEiJ_G0018057)	Serpina6 (MGP_CAROLIEiJ_G0018058)	Serpina16 (MGP_CAROLIEiJ_G0018059)	Serpina1f (MGP_CAROLIEiJ_G0018060)	MGP_CAROLIEiJ_G0018061	MGP_CAROLIEiJ_G0018062	MGP_CAROLIEiJ_G0018063	MGP_CAROLIEiJ_G0018064	MGP_CAROLIEiJ_G0018065	Serpina11 (MGP_CAROLIEiJ_G0018066)	Serpina9 (MGP_CAROLIEiJ_G0018067)	Serpina12 (MGP_CAROLIEiJ_G0018068)	Serpina5 (MGP_CAROLIEiJ_G0018069)	Serpina3a (MGP_CAROLIEiJ_G0018070) #21	Serpina3b (MGP_CAROLIEiJ_G0018071) #22	MGP_CAROLIEiJ_G0018072 ##28	MGP_CAROLIEiJ_G0018073 ##28	Serpina3m (MGP_CAROLIEiJ_G0018074) #20	Serpina3n (MGP_CAROLIEiJ_G0018075) ##28	Gsc (MGP_CAROLIEiJ_G0018076) #29	MGP_CAROLIEiJ_G0018077 #30	Dicer1 (MGP_CAROLIEiJ_G0018078) #31	Clmn (MGP_CAROLIEiJ_G0018079) #32	MGP_CAROLIEiJ_G0018080	Syne3 (MGP_CAROLIEiJ_G0018081) #33	Glrx5 (MGP_CAROLIEiJ_G0018082) #34	MGP_CAROLIEiJ_G0018083	MGP_CAROLIEiJ_G0018084 ##36	MGP_CAROLIEiJ_G0018085 ##36	MGP_CAROLIEiJ_G0018086 ##36