Bilateria	ANCESTRAL SPECIES																	ENSGT00390000014797 #22
Chordata	ANCESTRAL SPECIES																	ENSGT00390000014797 #22
Vertebrata	ANCESTRAL SPECIES	129																ENSGT00390000014797 #22	ENSGT00940000159140 #23	ENSGT00390000009853 #24
Gnathostomata	ANCESTRAL SPECIES	10	ENSGT00940000155035	ENSGT00940000156525	ENSGT00940000158286	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00530000063474.A	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00940000175884	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000155495.C #28	ENSGT00960000192669	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570 #35	ENSGT00940000154314	ENSGT00940000154352.A	ENSGT00390000015799 #36
Euteleostomi	ANCESTRAL SPECIES	4	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00530000063474.A	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.A	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37
Sarcopterygii	ANCESTRAL SPECIES	13	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00530000063474.A	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00990000210288	ENSGT00530000063787.B #30	ENSGT00940000154974 #31	ENSGT00940000164576.a	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.A	ENSGT00390000015799 #36
Tetrapoda	ANCESTRAL SPECIES	17	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00530000063787.B #30	ENSGT00940000154974 #31	ENSGT00400000024769 #32	ENSGT00940000164576.a	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.A	ENSGT00390000015799 #36
Amniota	ANCESTRAL SPECIES	10	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37
Mammalia	ANCESTRAL SPECIES	14	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37
Theria	ANCESTRAL SPECIES	26	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Eutheria	ANCESTRAL SPECIES	13	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Boreoeutheria	ANCESTRAL SPECIES	16	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00980000201701	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B
Euarchontoglires	ANCESTRAL SPECIES	16	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00390000012491 #21	ENSGT00940000168312	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00980000201701	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B
Euarchontoglires_A	ANCESTRAL SPECIES	15	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00390000012491 #21	ENSGT00940000168312	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Glires	ANCESTRAL SPECIES	16	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00390000012491 #21	ENSGT00940000168312	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Rodentia	ANCESTRAL SPECIES	16	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Rodentia_A	ANCESTRAL SPECIES	15	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f.g.b #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Sciuridae	ANCESTRAL SPECIES	21	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f.g.b #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Eurasian red squirrel	MODERN SPECIES	13	BUB3 (ENSSVLG00005000858) #7	ENSSVLG00005000813 #8	GPR26 (ENSSVLG00005000793) #9	CPXM2 (ENSSVLG00005000773) #10	ENSSVLG00005000742 #11	CHST15 (ENSSVLG00005000708) #12	ENSSVLG00005000651 #13	NKX1-2 (ENSSVLG00005000624) #14	LHPP (ENSSVLG00005000583) #15	FAM53B (ENSSVLG00005000544) #16	EEF1AKMT2 (ENSSVLG00005000510) #17	ABRAXAS2 (ENSSVLG00005000473) #18	ZRANB1 (ENSSVLG00005000426) #19	CTBP2 (ENSSVLG00005000348) #20	TEX36 (ENSSVLG00005000280) #21	EDRF1 (ENSSVLG00005000243) #22	MMP21 (ENSSVLG00005000191) #23	UROS (ENSSVLG00005022384) #24	ENSSVLG00005022333 #25	DHX32 (ENSSVLG00005022286) #26	FANK1 (ENSSVLG00005022149) #27	ADAM12 (ENSSVLG00005021959) #28	C10orf90 (ENSSVLG00005021828) #29	INSYN2A (ENSSVLG00005021779) #30	DOCK1 (ENSSVLG00005021022) #31	NPS (ENSSVLG00005020954) #32	FOXI2 (ENSSVLG00005020918) #33	CLRN3 (ENSSVLG00005020884) #34	PTPRE (ENSSVLG00005020703) #35	MGMT (ENSSVLG00005020626) #36	EBF3 (ENSSVLG00005020574) #37
Marmotini	ANCESTRAL SPECIES	16	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a.m.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f.g.b #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696.s #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Marmotini_b	ANCESTRAL SPECIES	27	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a.m.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f.g.b #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696.s #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37
Arctic ground squirrel	MODERN SPECIES	28	BUB3 (ENSUPAG00010004752) #7	GPR26 (ENSUPAG00010004746) #9	CPXM2 (ENSUPAG00010004732) #10	CHST15 (ENSUPAG00010004726) #12	OAT (ENSUPAG00010004703) #13	NKX1-2 (ENSUPAG00010004701) #14	LHPP (ENSUPAG00010004693) #15	FAM53B (ENSUPAG00010004683) #16	ENSUPAG00010004677	EEF1AKMT2 (ENSUPAG00010004656) #17	ABRAXAS2 (ENSUPAG00010004640) #18	ENSUPAG00010004631	ZRANB1 (ENSUPAG00010004606) #19	CTBP2 (ENSUPAG00010004547) #20	TEX36 (ENSUPAG00010004543) #21	EDRF1 (ENSUPAG00010004494) #22	MMP21 (ENSUPAG00010004374) #23	UROS (ENSUPAG00010004355) #24	BCCIP (ENSUPAG00010004344) #25	DHX32 (ENSUPAG00010004327) #26	FANK1 (ENSUPAG00010004312) #27	ADAM12 (ENSUPAG00010004287) #28	C10orf90 (ENSUPAG00010004259) #29	INSYN2A (ENSUPAG00010004240) #30	DOCK1 (ENSUPAG00010004204) #31	NPS (ENSUPAG00010004193) #32	FOXI2 (ENSUPAG00010004190) #33	CLRN3 (ENSUPAG00010004181) #34	PTPRE (ENSUPAG00010003984) #35
Squirrel	MODERN SPECIES	86	HMX2 (ENSSTOG00000000994)	ENSSTOG00000021785 #7	GPR26 (ENSSTOG00000026881) #9	CPXM2 (ENSSTOG00000020281) #10	CHST15 (ENSSTOG00000020654) #12	OAT (ENSSTOG00000004524) #13	NKX1-2 (ENSSTOG00000021286) #14	LHPP (ENSSTOG00000021871) #15	FAM53B (ENSSTOG00000004536) #16	EEF1AKMT2 (ENSSTOG00000031706) #17	ENSSTOG00000031920	ABRAXAS2 (ENSSTOG00000029214) #18	ZRANB1 (ENSSTOG00000014180) #19	CTBP2 (ENSSTOG00000014199) #20	TEX36 (ENSSTOG00000008384) #21	EDRF1 (ENSSTOG00000011796) #22	MMP21 (ENSSTOG00000011810) #23	UROS (ENSSTOG00000011820) #24	ENSSTOG00000011828 #25	DHX32 (ENSSTOG00000019851) #26	FANK1 (ENSSTOG00000003931) #27	ADAM12 (ENSSTOG00000003951) #28	C10orf90 (ENSSTOG00000003990) #29	DOCK1 (ENSSTOG00000008039) #31	INSYN2A (ENSSTOG00000008121) #30	NPS (ENSSTOG00000033393) #32	FOXI2 (ENSSTOG00000000818) #33	CLRN3 (ENSSTOG00000005988) #34	PTPRE (ENSSTOG00000005993) #35	MGMT (ENSSTOG00000034415) #36	EBF3 (ENSSTOG00000006113) #37
Alpin marmot	MODERN SPECIES	53	PSTK (ENSMMMG00000002014)	IKZF5 (ENSMMMG00000002033)	ACADSB (ENSMMMG00000002052)	HMX2 (ENSMMMG00000002076)	ENSMMMG00000002090 #7	GPR26 (ENSMMMG00000002142) #9	CPXM2 (ENSMMMG00000002158) #10	CHST15 (ENSMMMG00000002233) #12	OAT (ENSMMMG00000002258) #13	LHPP (ENSMMMG00000002272) #15	FAM53B (ENSMMMG00000002296) #16	ENSMMMG00000002319 #17	ABRAXAS2 (ENSMMMG00000002355) #18	ZRANB1 (ENSMMMG00000002368) #19	CTBP2 (ENSMMMG00000002426) #20	EDRF1 (ENSMMMG00000002477) #22	MMP21 (ENSMMMG00000002600) #23	UROS (ENSMMMG00000002640) #24	ENSMMMG00000002705 #25	DHX32 (ENSMMMG00000002778) #26	FANK1 (ENSMMMG00000002858) #27	ADAM12 (ENSMMMG00000002897) #28	C10orf90 (ENSMMMG00000002952) #29	DOCK1 (ENSMMMG00000003000) #31	INSYN2A (ENSMMMG00000003123) #30	NPS (ENSMMMG00000003133) #32	FOXI2 (ENSMMMG00000003153) #33	CLRN3 (ENSMMMG00000003163) #34	PTPRE (ENSMMMG00000003177) #35	ENSMMMG00000003323	ENSMMMG00000003330
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a.o #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f.g.b #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Hystricomorpha_a	ANCESTRAL SPECIES	3	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a.o #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f.g.b #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00530000063787.B #30	ENSGT00940000154974 #31	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37
Hystricomorpha_b	ANCESTRAL SPECIES	14	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a.o #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f.g.b #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37
Long-tailed chinchilla	MODERN SPECIES	184	HMX2 (ENSCLAG00000005166)	BUB3 (ENSCLAG00000005834) #7	GPR26 (ENSCLAG00000001930) #9	CPXM2 (ENSCLAG00000001957) #10	CHST15 (ENSCLAG00000002182) #12	ENSCLAG00000002303	OAT (ENSCLAG00000003848) #13	NKX1-2 (ENSCLAG00000004174) #14	LHPP (ENSCLAG00000004436) #15	FAM53B (ENSCLAG00000003033) #16	EEF1AKMT2 (ENSCLAG00000003615) #17	ABRAXAS2 (ENSCLAG00000003508) #18	ZRANB1 (ENSCLAG00000003775) #19	CTBP2 (ENSCLAG00000004983) #20	TEX36 (ENSCLAG00000002643) #21	EDRF1 (ENSCLAG00000002765) #22	MMP21 (ENSCLAG00000010900) #23	UROS (ENSCLAG00000011035) #24	BCCIP (ENSCLAG00000010908) #25	DHX32 (ENSCLAG00000012050) #26	FANK1 (ENSCLAG00000003154) #27	ADAM12 (ENSCLAG00000003758) #28	C10orf90 (ENSCLAG00000002496) #29	DOCK1 (ENSCLAG00000002979) #31	INSYN2A (ENSCLAG00000002354) #30	NPS (ENSCLAG00000002433) #32	FOXI2 (ENSCLAG00000002504) #33	CLRN3 (ENSCLAG00000002567) #34	PTPRE (ENSCLAG00000007311) #35	MGMT (ENSCLAG00000002984) #36	EBF3 (ENSCLAG00000003349) #37
Degu	MODERN SPECIES	51	GPR26 (ENSODEG00000017488) #9	CPXM2 (ENSODEG00000017290) #10	CHST15 (ENSODEG00000017382) #12	ENSODEG00000017605	ENSODEG00000017421 #13	ENSODEG00000017371	NKX1-2 (ENSODEG00000017123) #14	LHPP (ENSODEG00000017592) #15	FAM53B (ENSODEG00000017219) #16	EEF1AKMT2 (ENSODEG00000017201) #17	ENSODEG00000020434	ENSODEG00000017504 #18	ZRANB1 (ENSODEG00000017463) #19	ENSODEG00000017299 ##20	ENSODEG00000020429	EDRF1 (ENSODEG00000017549) #22	ENSODEG00000017340	ENSODEG00000017669 #24	BCCIP (ENSODEG00000017275) #25	DHX32 (ENSODEG00000017305) #26	ENSODEG00000020420	FANK1 (ENSODEG00000017273) #27	ADAM12 (ENSODEG00000017603) #28	C10orf90 (ENSODEG00000017207) #29	ENSODEG00000017410	ENSODEG00000017188	INSYN2A (ENSODEG00000017248) #30	DOCK1 (ENSODEG00000017379) #31	NPS (ENSODEG00000017172) #32	FOXI2 (ENSODEG00000017334) #33	CLRN3 (ENSODEG00000017134) #34
Guinea pig	MODERN SPECIES	1	ACADSB (ENSCPOG00000012372)	HMX3 (ENSCPOG00000011950)	HMX2 (ENSCPOG00000032283)	BUB3 (ENSCPOG00000011957) #7	GPR26 (ENSCPOG00000037735) #9	CPXM2 (ENSCPOG00000009383) #10	CHST15 (ENSCPOG00000038052) #12	OAT (ENSCPOG00000010340) #13	LHPP (ENSCPOG00000005337) #15	FAM53B (ENSCPOG00000005340) #16	EEF1AKMT2 (ENSCPOG00000005341) #17	ENSCPOG00000005342 #18	ZRANB1 (ENSCPOG00000008391) #19	CTBP2 (ENSCPOG00000008397) #20	TEX36 (ENSCPOG00000004817) #21	EDRF1 (ENSCPOG00000004826) #22	MMP21 (ENSCPOG00000004833) #23	UROS (ENSCPOG00000004834) #24	BCCIP (ENSCPOG00000006438) #25	DHX32 (ENSCPOG00000006441) #26	FANK1 (ENSCPOG00000003862) #27	ADAM12 (ENSCPOG00000003867) #28	C10orf90 (ENSCPOG00000011106) #29	HNRNPA1L2 (ENSCPOG00000021077)	INSYN2A (ENSCPOG00000015500) #30	DOCK1 (ENSCPOG00000015495) #31	NPS (ENSCPOG00000020430) #32	FOXI2 (ENSCPOG00000011791) #33	CLRN3 (ENSCPOG00000014139) #34	PTPRE (ENSCPOG00000014140) #35	ENSCPOG00000008681
Naked mole-rat female	MODERN SPECIES	4	HMX2 (ENSHGLG00000042092)	BUB3 (ENSHGLG00000012641) #7	GPR26 (ENSHGLG00000032021) #9	CPXM2 (ENSHGLG00000013494) #10	CHST15 (ENSHGLG00000010199) #12	OAT (ENSHGLG00000009823) #13	NKX1-2 (ENSHGLG00000014909) #14	LHPP (ENSHGLG00000037777) #15	ENSHGLG00000036038	FAM53B (ENSHGLG00000045048) #16	EEF1AKMT2 (ENSHGLG00000036735) #17	ENSHGLG00000042876 #18	ZRANB1 (ENSHGLG00000013127) #19	ENSHGLG00000010849 ##20	TEX36 (ENSHGLG00000046213) #21	EDRF1 (ENSHGLG00000012871) #22	UROS (ENSHGLG00000016055) #24	BCCIP (ENSHGLG00000043442) #25	DHX32 (ENSHGLG00000013097) #26	FANK1 (ENSHGLG00000009806) #27	ENSHGLG00000043454	ADAM12 (ENSHGLG00000014915) #28	ENSHGLG00000004128	ENSHGLG00000017225 #29	ENSHGLG00000043292 #29	ENSHGLG00000015801	ENSHGLG00000017202	ENSHGLG00000046538 #31	NPS (ENSHGLG00000011458) #32	FOXI2 (ENSHGLG00000010615) #33	CLRN3 (ENSHGLG00000010190) #34
Rodentia_B	ANCESTRAL SPECIES	10	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Muroidea	ANCESTRAL SPECIES	1	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Muroidea_A	ANCESTRAL SPECIES		ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00940000154430.e.b ##20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Chinese hamster chok1gshd	MODERN SPECIES	401	Hmx2 (ENSCGRG00001013576)	Bub3 (ENSCGRG00001014854) #7	ENSCGRG00001022673	Gpr26 (ENSCGRG00001000638) #9	Cpxm2 (ENSCGRG00001010429) #10	Chst15 (ENSCGRG00001015965) #12	Oat (ENSCGRG00001013711) #13	Nkx1-2 (ENSCGRG00001018225) #14	Lhpp (ENSCGRG00001021039) #15	Fam53b (ENSCGRG00001015896) #16	Eef1akmt2 (ENSCGRG00001018428) #17	Abraxas2 (ENSCGRG00001020558) #18	Zranb1 (ENSCGRG00001024189) #19	Ctbp2 (ENSCGRG00001017809) #20	Tex36 (ENSCGRG00001008694) #21	Edrf1 (ENSCGRG00001011728) #22	Mmp21 (ENSCGRG00001021076) #23	Uros (ENSCGRG00001022739) #24	Bccip (ENSCGRG00001013505) #25	Dhx32 (ENSCGRG00001016739) #26	Fank1 (ENSCGRG00001019346) #27	Adam12 (ENSCGRG00001019498) #28	D7Ertd443e (ENSCGRG00001009985) #29	Dock1 (ENSCGRG00001021352) #31	Insyn2a (ENSCGRG00001015996) #30	Nps (ENSCGRG00001019970) #32	Foxi2 (ENSCGRG00001007522) #33	Clrn3 (ENSCGRG00001019690) #34	Ptpre (ENSCGRG00001012914) #35	Mki67 (ENSCGRG00001017463)	Mgmt (ENSCGRG00001004521) #36
Golden Hamster	MODERN SPECIES	617	Hmx2 (ENSMAUG00000006087)	Gpr26 (ENSMAUG00000004635) #9	Cpxm2 (ENSMAUG00000009447) #10	Chst15 (ENSMAUG00000008576) #12	ENSMAUG00000004967	Oat (ENSMAUG00000006454) #13	Nkx1-2 (ENSMAUG00000005005) #14	Lhpp (ENSMAUG00000008910) #15	Fam53b (ENSMAUG00000003890) #16	Eef1akmt2 (ENSMAUG00000004683) #17	Abraxas2 (ENSMAUG00000004496) #18	Zranb1 (ENSMAUG00000004316) #19	ENSMAUG00000004260 ##20	ENSMAUG00000001848	Tex36 (ENSMAUG00000003543) #21	Edrf1 (ENSMAUG00000006045) #22	Mmp21 (ENSMAUG00000003750) #23	Uros (ENSMAUG00000003631) #24	Bccip (ENSMAUG00000004747) #25	Dhx32 (ENSMAUG00000003238) #26	Fank1 (ENSMAUG00000009677) #27	Adam12 (ENSMAUG00000006532) #28	D7Ertd443e (ENSMAUG00000006262) #29	ENSMAUG00000003941 #31	Insyn2a (ENSMAUG00000004802) #30	Nps (ENSMAUG00000003085) #32	Foxi2 (ENSMAUG00000002075) #33	Clrn3 (ENSMAUG00000003679) #34	Ptpre (ENSMAUG00000006895) #35	Mki67 (ENSMAUG00000004207)	Mgmt (ENSMAUG00000003180) #36
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00940000154430.e.b ##20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Northern American deer mouse	MODERN SPECIES		Hmx2 (ENSPEMG00000020567)	Bub3 (ENSPEMG00000022008) #7	Gpr26 (ENSPEMG00000021661) #9	Cpxm2 (ENSPEMG00000010409) #10	Chst15 (ENSPEMG00000025384) #12	Oat (ENSPEMG00000000214) #13	Nkx1-2 (ENSPEMG00000029119) #14	Lhpp (ENSPEMG00000025159) #15	Fam53b (ENSPEMG00000021254) #16	Eef1akmt2 (ENSPEMG00000012513) #17	Abraxas2 (ENSPEMG00000000943) #18	Zranb1 (ENSPEMG00000021601) #19	Ctbp2 (ENSPEMG00000016006) #20	ENSPEMG00000025858	Tex36 (ENSPEMG00000028129) #21	Edrf1 (ENSPEMG00000020993) #22	Mmp21 (ENSPEMG00000022056) #23	Uros (ENSPEMG00000000385) #24	Bccip (ENSPEMG00000020996) #25	Dhx32 (ENSPEMG00000020674) #26	Fank1 (ENSPEMG00000020393) #27	Adam12 (ENSPEMG00000020560) #28	D7Ertd443e (ENSPEMG00000011783) #29	Dock1 (ENSPEMG00000022081) #31	Insyn2a (ENSPEMG00000024251) #30	ENSPEMG00000022297	Nps (ENSPEMG00000020990) #32	Foxi2 (ENSPEMG00000021475) #33	Clrn3 (ENSPEMG00000029776) #34	Ptpre (ENSPEMG00000013794) #35	Mgmt (ENSPEMG00000023565) #36
Prairie vole	MODERN SPECIES	16	Hmx3 (ENSMOCG00000017634)	Hmx2 (ENSMOCG00000019525)	Bub3 (ENSMOCG00000022149) #7	Gpr26 (ENSMOCG00000010123) #9	Cpxm2 (ENSMOCG00000016240) #10	Chst15 (ENSMOCG00000000598) #12	Oat (ENSMOCG00000020929) #13	Nkx1-2 (ENSMOCG00000000486) #14	Lhpp (ENSMOCG00000011963) #15	Fam53b (ENSMOCG00000021588) #16	Eef1akmt2 (ENSMOCG00000015688) #17	Abraxas2 (ENSMOCG00000001436) #18	Zranb1 (ENSMOCG00000013623) #19	ENSMOCG00000001972 ##20	Tex36 (ENSMOCG00000009219) #21	Edrf1 (ENSMOCG00000018530) #22	Mmp21 (ENSMOCG00000010101) #23	Uros (ENSMOCG00000013059) #24	Bccip (ENSMOCG00000001214) #25	Dhx32 (ENSMOCG00000009862) #26	Fank1 (ENSMOCG00000004647) #27	Adam12 (ENSMOCG00000006212) #28	D7Ertd443e (ENSMOCG00000019523) #29	Dock1 (ENSMOCG00000015324) #31	Insyn2a (ENSMOCG00000018294) #30	Nps (ENSMOCG00000021758) #32	Foxi2 (ENSMOCG00000021677) #33	Clrn3 (ENSMOCG00000002635) #34	Ptpre (ENSMOCG00000017071) #35	Mki67 (ENSMOCG00000003924)	ENSMOCG00000001433
Murinae	ANCESTRAL SPECIES		ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Mus	ANCESTRAL SPECIES		ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00900000143289	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B
Mus_A	ANCESTRAL SPECIES	1	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00900000143289	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B
Mus_B	ANCESTRAL SPECIES		ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00900000143289	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B
Mouse	MODERN SPECIES	16	Hmx3 (ENSMUSG00000040148)	Hmx2 (ENSMUSG00000050100)	Bub3 (ENSMUSG00000066979) #7	Gpr26 (ENSMUSG00000040125) #9	Cpxm2 (ENSMUSG00000030862) #10	Chst15 (ENSMUSG00000030930) #12	Oat (ENSMUSG00000030934) #13	Nkx1-2 (ENSMUSG00000048528) #14	Lhpp (ENSMUSG00000030946) #15	Fam53b (ENSMUSG00000030956) #16	Eef1akmt2 (ENSMUSG00000030960) #17	Abraxas2 (ENSMUSG00000030965) #18	Zranb1 (ENSMUSG00000030967) #19	Ctbp2 (ENSMUSG00000030970) #20	Tex36 (ENSMUSG00000030976) #21	Edrf1 (ENSMUSG00000039990) #22	Mmp21 (ENSMUSG00000030981) #23	Uros (ENSMUSG00000030979) #24	Bccip (ENSMUSG00000030983) #25	Dhx32 (ENSMUSG00000030986) #26	Fank1 (ENSMUSG00000053111) #27	Adam12 (ENSMUSG00000054555) #28	D7Ertd443e (ENSMUSG00000030994) #29	Dock1 (ENSMUSG00000058325) #31	Insyn2a (ENSMUSG00000073805) #30	Nps (ENSMUSG00000073804) #32	Foxi2 (ENSMUSG00000048377) #33	Clrn3 (ENSMUSG00000050866) #34	Ptpre (ENSMUSG00000041836) #35	Mki67 (ENSMUSG00000031004)	Mgmt (ENSMUSG00000054612) #36
Mus_C	ANCESTRAL SPECIES	14	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00900000143289	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B
Steppe mouse	MODERN SPECIES	3376	Bub3 (ENSMSIG00000023396) #7	ENSMSIG00000023462	Gpr26 (ENSMSIG00000023472) #9	Cpxm2 (ENSMSIG00000023477) #10	Chst15 (ENSMSIG00000023493) #12	ENSMSIG00000023527	ENSMSIG00000023534 #13	Nkx1-2 (ENSMSIG00000023549) #14	Lhpp (ENSMSIG00000023563) #15	Fam53b (ENSMSIG00000023591) #16	Eef1akmt2 (ENSMSIG00000023639) #17	Abraxas2 (ENSMSIG00000023665) #18	Zranb1 (ENSMSIG00000023686) #19	Ctbp2 (ENSMSIG00000023710) #20	Tex36 (ENSMSIG00000023776) #21	Edrf1 (ENSMSIG00000023786) #22	Mmp21 (ENSMSIG00000023891) #23	Uros (ENSMSIG00000023927) #24	Bccip (ENSMSIG00000023985) #25	Dhx32 (ENSMSIG00000024001) #26	Fank1 (ENSMSIG00000024019) #27	Adam12 (ENSMSIG00000024107) #28	D7Ertd443e (ENSMSIG00000024194) #29	ENSMSIG00000024284	Dock1 (ENSMSIG00000024295) #31	Insyn2a (ENSMSIG00000024536) #30	Nps (ENSMSIG00000024560) #32	Foxi2 (ENSMSIG00000024570) #33	Clrn3 (ENSMSIG00000024584) #34	Ptpre (ENSMSIG00000024604) #35	Mki67 (ENSMSIG00000024930)
spretus	MODERN SPECIES	16	Hmx3 (MGP_SPRETEiJ_G0031685)	Hmx2 (MGP_SPRETEiJ_G0031686)	Bub3 (MGP_SPRETEiJ_G0031687) #7	Gpr26 (MGP_SPRETEiJ_G0031688) #9	Cpxm2 (MGP_SPRETEiJ_G0031689) #10	Chst15 (MGP_SPRETEiJ_G0031690) #12	Oat (MGP_SPRETEiJ_G0031691) #13	Nkx1-2 (MGP_SPRETEiJ_G0031692) #14	Lhpp (MGP_SPRETEiJ_G0031693) #15	Fam53b (MGP_SPRETEiJ_G0031694) #16	Eef1akmt2 (MGP_SPRETEiJ_G0031695) #17	Abraxas2 (MGP_SPRETEiJ_G0031696) #18	Zranb1 (MGP_SPRETEiJ_G0031697) #19	Ctbp2 (MGP_SPRETEiJ_G0031698) #20	Tex36 (MGP_SPRETEiJ_G0031699) #21	Edrf1 (MGP_SPRETEiJ_G0031700) #22	Mmp21 (MGP_SPRETEiJ_G0031701) #23	Uros (MGP_SPRETEiJ_G0031702) #24	Bccip (MGP_SPRETEiJ_G0031703) #25	Dhx32 (MGP_SPRETEiJ_G0031704) #26	Fank1 (MGP_SPRETEiJ_G0031705) #27	Adam12 (MGP_SPRETEiJ_G0031706) #28	D7Ertd443e (MGP_SPRETEiJ_G0031707) #29	MGP_SPRETEiJ_G0031708 #31	Insyn2a (MGP_SPRETEiJ_G0031709) #30	Nps (MGP_SPRETEiJ_G0031710) #32	MGP_SPRETEiJ_G0031711	Foxi2 (MGP_SPRETEiJ_G0031712) #33	Clrn3 (MGP_SPRETEiJ_G0031713) #34	Ptpre (MGP_SPRETEiJ_G0031714) #35	Mgmt (MGP_SPRETEiJ_G0031715) #36
Ryukyu mouse	MODERN SPECIES	16	Hmx3 (MGP_CAROLIEiJ_G0030571)	Hmx2 (MGP_CAROLIEiJ_G0030572)	Bub3 (MGP_CAROLIEiJ_G0030573) #7	Gpr26 (MGP_CAROLIEiJ_G0030574) #9	Cpxm2 (MGP_CAROLIEiJ_G0030575) #10	Chst15 (MGP_CAROLIEiJ_G0030576) #12	Oat (MGP_CAROLIEiJ_G0030577) #13	Nkx1-2 (MGP_CAROLIEiJ_G0030578) #14	Lhpp (MGP_CAROLIEiJ_G0030579) #15	Fam53b (MGP_CAROLIEiJ_G0030580) #16	Eef1akmt2 (MGP_CAROLIEiJ_G0030581) #17	Abraxas2 (MGP_CAROLIEiJ_G0030582) #18	Zranb1 (MGP_CAROLIEiJ_G0030583) #19	Ctbp2 (MGP_CAROLIEiJ_G0030584) #20	Tex36 (MGP_CAROLIEiJ_G0030585) #21	Edrf1 (MGP_CAROLIEiJ_G0030586) #22	Mmp21 (MGP_CAROLIEiJ_G0030587) #23	Uros (MGP_CAROLIEiJ_G0030588) #24	Bccip (MGP_CAROLIEiJ_G0030589) #25	Dhx32 (MGP_CAROLIEiJ_G0030590) #26	Fank1 (MGP_CAROLIEiJ_G0030591) #27	Adam12 (MGP_CAROLIEiJ_G0030592) #28	D7Ertd443e (MGP_CAROLIEiJ_G0030593) #29	MGP_CAROLIEiJ_G0030594	MGP_CAROLIEiJ_G0030595	Dock1 (MGP_CAROLIEiJ_G0030596) #31	Insyn2a (MGP_CAROLIEiJ_G0030597) #30	Nps (MGP_CAROLIEiJ_G0030598) #32	MGP_CAROLIEiJ_G0030599	Foxi2 (MGP_CAROLIEiJ_G0030600) #33	Clrn3 (MGP_CAROLIEiJ_G0030601) #34
Shrew mouse	MODERN SPECIES		Hmx3 (MGP_PahariEiJ_G0013778)	Hmx2 (MGP_PahariEiJ_G0013779)	Bub3 (MGP_PahariEiJ_G0013780) #7	Gpr26 (MGP_PahariEiJ_G0013781) #9	Cpxm2 (MGP_PahariEiJ_G0013782) #10	Chst15 (MGP_PahariEiJ_G0013783) #12	Oat (MGP_PahariEiJ_G0013784) #13	Nkx1-2 (MGP_PahariEiJ_G0013785) #14	Lhpp (MGP_PahariEiJ_G0013786) #15	Fam53b (MGP_PahariEiJ_G0013787) #16	MGP_PahariEiJ_G0013788	Abraxas2 (MGP_PahariEiJ_G0013789) #18	Zranb1 (MGP_PahariEiJ_G0013790) #19	Ctbp2 (MGP_PahariEiJ_G0013791) #20	Tex36 (MGP_PahariEiJ_G0013792) #21	Edrf1 (MGP_PahariEiJ_G0013793) #22	Mmp21 (MGP_PahariEiJ_G0013794) #23	MGP_PahariEiJ_G0013795	Bccip (MGP_PahariEiJ_G0013796) #25	Dhx32 (MGP_PahariEiJ_G0013797) #26	Fank1 (MGP_PahariEiJ_G0013798) #27	Adam12 (MGP_PahariEiJ_G0013799) #28	D7Ertd443e (MGP_PahariEiJ_G0013800) #29	Dock1 (MGP_PahariEiJ_G0013801) #31	Insyn2a (MGP_PahariEiJ_G0013802) #30	Nps (MGP_PahariEiJ_G0013803) #32	MGP_PahariEiJ_G0013804	Foxi2 (MGP_PahariEiJ_G0013805) #33	Clrn3 (MGP_PahariEiJ_G0013806) #34	Ptpre (MGP_PahariEiJ_G0013807) #35	MGP_PahariEiJ_G0013808
Rat	MODERN SPECIES		Cpxm2 (ENSRNOG00000015902) #10	AABR07005886.1 (ENSRNOG00000053539)	Chst15 (ENSRNOG00000016267) #12	ENSRNOG00000070567	Oat (ENSRNOG00000016807) #13	Nkx1-2 (ENSRNOG00000017006) #14	Lhpp (ENSRNOG00000017097) #15	Fam53b (ENSRNOG00000061348) #16	Eef1akmt2 (ENSRNOG00000017137) #17	Abraxas2 (ENSRNOG00000017222) #18	ENSRNOG00000064132	Zranb1 (ENSRNOG00000017294) #19	Ctbp2 (ENSRNOG00000017326) #20	ENSRNOG00000063891	Tex36 (ENSRNOG00000026848) #21	Edrf1 (ENSRNOG00000017728) #22	Mmp21 (ENSRNOG00000017756) #23	Uros (ENSRNOG00000017810) #24	Bccip (ENSRNOG00000018066) #25	Dhx32 (ENSRNOG00000018119) #26	Fank1 (ENSRNOG00000018327) #27	Adam12 (ENSRNOG00000018384) #28	LOC100302465 (ENSRNOG00000027542) #29	Insyn2a (ENSRNOG00000033881) #30	Nps (ENSRNOG00000036653) #32	Foxi2 (ENSRNOG00000018917) #33	Clrn3 (ENSRNOG00000028288) #34	Ptpre (ENSRNOG00000015717) #35	Mki67 (ENSRNOG00000028137)	Mgmt (ENSRNOG00000016038) #36	Ebf3 (ENSRNOG00000016102) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1308							Oat (ENSNGAG00000010885) #13	Nkx1-2 (ENSNGAG00000017726) #14	Lhpp (ENSNGAG00000022247) #15	Fam53b (ENSNGAG00000006778) #16	Eef1akmt2 (ENSNGAG00000006986) #17	Abraxas2 (ENSNGAG00000012432) #18	Zranb1 (ENSNGAG00000023760) #19	ENSNGAG00000005443 ##20	Tex36 (ENSNGAG00000022368) #21	Edrf1 (ENSNGAG00000023651) #22	Mmp21 (ENSNGAG00000014910) #23	Uros (ENSNGAG00000008613) #24	Bccip (ENSNGAG00000011487) #25	Dhx32 (ENSNGAG00000016908) #26	Fank1 (ENSNGAG00000022049) #27	Adam12 (ENSNGAG00000020011) #28	D7Ertd443e (ENSNGAG00000010535) #29	ENSNGAG00000015824 #31
Lesser Egyptian jerboa	MODERN SPECIES	70	Hmx2 (ENSJJAG00000021150)	ENSJJAG00000019122 #7	Gpr26 (ENSJJAG00000024093) #9	Cpxm2 (ENSJJAG00000024326) #10	Chst15 (ENSJJAG00000020736) #12	ENSJJAG00000013687 #13	ENSJJAG00000006526	Lhpp (ENSJJAG00000019644) #15	Fam53b (ENSJJAG00000017105) #16	Eef1akmt2 (ENSJJAG00000010893) #17	Abraxas2 (ENSJJAG00000012646) #18	ENSJJAG00000018536	Zranb1 (ENSJJAG00000009904) #19	ENSJJAG00000022075 ##20	Tex36 (ENSJJAG00000020679) #21	Edrf1 (ENSJJAG00000015613) #22	Mmp21 (ENSJJAG00000017716) #23	Uros (ENSJJAG00000005821) #24	ENSJJAG00000018836 #25	Dhx32 (ENSJJAG00000000393) #26	Fank1 (ENSJJAG00000017415) #27	Adam12 (ENSJJAG00000019560) #28	D7Ertd443e (ENSJJAG00000020919) #29	ENSJJAG00000023445 #31	Insyn2a (ENSJJAG00000015004) #30	Nps (ENSJJAG00000022443) #32	ENSJJAG00000015645	ENSJJAG00000018337 #33
Kangaroo rat	MODERN SPECIES	377	Acadsb (ENSDORG00000001496)	Hmx3 (ENSDORG00000002862)	Hmx2 (ENSDORG00000028020)	Bub3 (ENSDORG00000002864) #7	Gpr26 (ENSDORG00000013184) #9	Cpxm2 (ENSDORG00000013185) #10	Chst15 (ENSDORG00000025969) #12	Oat (ENSDORG00000013083) #13	Lhpp (ENSDORG00000009409) #15	Fam53b (ENSDORG00000029982) #16	Eef1akmt2 (ENSDORG00000016286) #17	Abraxas2 (ENSDORG00000015413) #18	Zranb1 (ENSDORG00000010679) #19	ENSDORG00000026871 ##20	Tex36 (ENSDORG00000012145) #21	Edrf1 (ENSDORG00000012147) #22	Mmp21 (ENSDORG00000012150) #23	Uros (ENSDORG00000012151) #24	Bccip (ENSDORG00000008005) #25	Dhx32 (ENSDORG00000008006) #26	Fank1 (ENSDORG00000005607) #27	Adam12 (ENSDORG00000005609) #28	ENSDORG00000024720 #29	Insyn2a (ENSDORG00000003447) #30	Dock1 (ENSDORG00000003440) #31	Nps (ENSDORG00000013294) #32	Clrn3 (ENSDORG00000026991) #34	Ptpre (ENSDORG00000010146) #35	Ebf3 (ENSDORG00000012111) #37	ENSDORG00000014163	Tcerg1l (ENSDORG00000013471)
Lagomorpha	ANCESTRAL SPECIES	174														ENSGT00390000012491 #21	ENSGT00940000168312	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.b ##35	ENSGT00940000156570.a #35	ENSGT00940000154352.B
Rabbit	MODERN SPECIES	459															TEX36 (ENSOCUG00000003579) #21	EDRF1 (ENSOCUG00000003588) #22	MMP21 (ENSOCUG00000001680) #23	ENSOCUG00000004572 #24	ENSOCUG00000008761 #25	DHX32 (ENSOCUG00000008767) #26	FANK1 (ENSOCUG00000008772) #27	ADAM12 (ENSOCUG00000008781) #28	ENSOCUG00000026222 #29	DOCK1 (ENSOCUG00000001447) #31	INSYN2A (ENSOCUG00000001462) #30	NPS (ENSOCUG00000028102) #32	ENSOCUG00000024632 #33	CLRN3 (ENSOCUG00000008445) #34	ENSOCUG00000034874 ##35	PTPRE (ENSOCUG00000038550) #35	ENSOCUG00000005133
Pika	MODERN SPECIES	4243														TEX36 (ENSOPRG00000007277) #21	ENSOPRG00000007286	EDRF1 (ENSOPRG00000007294) #22	MMP21 (ENSOPRG00000007314) #23	UROS (ENSOPRG00000007323) #24	BCCIP (ENSOPRG00000007334) #25	DHX32 (ENSOPRG00000007344) #26
Tree shrew	MODERN SPECIES	4344														ENSTBEG00000008066	ENSTBEG00000008546	EDRF1 (ENSTBEG00000008777) #22	MMP21 (ENSTBEG00000001220) #23	UROS (ENSTBEG00000002005) #24	ENSTBEG00000002570 #25	DHX32 (ENSTBEG00000003178) #26
Primates	ANCESTRAL SPECIES	16	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00390000012491 #21	ENSGT00940000168312	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00980000201701	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B
Haplorrhini	ANCESTRAL SPECIES	11	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00390000012491 #21	ENSGT00940000168312	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Simiiformes	ANCESTRAL SPECIES	17	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895.w #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00390000012491 #21	ENSGT00940000168312	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00960000187700	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B
Catarrhini	ANCESTRAL SPECIES	18	ENSGT00950000183001.a.a #9	ENSGT00910000147603	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895.w #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00500000045038.y.a.a	ENSGT00390000012491 #21	ENSGT00940000168312	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696.ab #25	ENSGT00940000157227 #26	ENSGT00960000187700	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00910000147135
Hominoidea	ANCESTRAL SPECIES	11	ENSGT00910000147603	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895.w #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00500000045038.y.a.a	ENSGT00390000012491 #21	ENSGT00950000182987.c.a.a.db.b	ENSGT00940000168312	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696.ab #25	ENSGT00940000157227 #26	ENSGT00960000187700	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00910000147135
Hominidae	ANCESTRAL SPECIES	13	ENSGT00950000183001.a.a #9	ENSGT00910000147603	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895.w #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00500000045038.y.a.a	ENSGT00390000012491 #21	ENSGT00950000182987.c.a.a.db.b	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696.ab #25	ENSGT00940000157227 #26	ENSGT00960000187700	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	17	ENSGT00950000183001.a.a #9	ENSGT00910000147603	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895.w #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00500000045038.y.a.a	ENSGT00390000012491 #21	ENSGT00950000182987.c.a.a.db.b	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696.ab #25	ENSGT00940000157227 #26	ENSGT00960000187700	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B
Homo/Pan group	ANCESTRAL SPECIES	18	ENSGT00950000183001.a.a #9	ENSGT00910000147603	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895.w #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00500000045038.y.a.a	ENSGT00390000012491 #21	ENSGT00950000182987.c.a.a.db.b	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696.ab #25	ENSGT00940000157227 #26	ENSGT00960000187700	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B
Pan	ANCESTRAL SPECIES	16	ENSGT00950000183001.a.a #9	ENSGT00910000147603	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895.w #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00500000045038.y.a.a	ENSGT00390000012491 #21	ENSGT00950000182987.c.a.a.db.b	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696.ab #25	ENSGT00940000157227 #26	ENSGT00960000187700	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B
Bonobo	MODERN SPECIES	1	ENSPPAG00000043570	BUB3 (ENSPPAG00000030058) #7	ENSPPAG00000040773 #9	ENSPPAG00000024928	CPXM2 (ENSPPAG00000037917) #10	CHST15 (ENSPPAG00000037921) #12	OAT (ENSPPAG00000034558) #13	ENSPPAG00000037855 #14	LHPP (ENSPPAG00000041898) #15	FAM53B (ENSPPAG00000027228) #16	EEF1AKMT2 (ENSPPAG00000034943) #17	ABRAXAS2 (ENSPPAG00000031972) #18	ZRANB1 (ENSPPAG00000036455) #19	CTBP2 (ENSPPAG00000032942) #20	TEX36 (ENSPPAG00000034284) #21	EDRF1 (ENSPPAG00000028277) #22	MMP21 (ENSPPAG00000043548) #23	UROS (ENSPPAG00000029805) #24	ENSPPAG00000021151 #25	DHX32 (ENSPPAG00000034148) #26	FANK1 (ENSPPAG00000027396) #27	ENSPPAG00000035905	ADAM12 (ENSPPAG00000028636) #28	C10orf90 (ENSPPAG00000040831) #29	DOCK1 (ENSPPAG00000040838) #31	INSYN2A (ENSPPAG00000035245) #30	NPS (ENSPPAG00000028558) #32	FOXI2 (ENSPPAG00000039312) #33	CLRN3 (ENSPPAG00000040282) #34	PTPRE (ENSPPAG00000009555) #35	MKI67 (ENSPPAG00000037634)
Chimpanzee	MODERN SPECIES	1	GPR26 (ENSPTRG00000045403) #9	ENSPTRG00000043279	CPXM2 (ENSPTRG00000003027) #10	CHST15 (ENSPTRG00000023167) #12	OAT (ENSPTRG00000003028) #13	NKX1-2 (ENSPTRG00000046548) #14	LHPP (ENSPTRG00000003030) #15	FAM53B (ENSPTRG00000003031) #16	EEF1AKMT2 (ENSPTRG00000032571) #17	ABRAXAS2 (ENSPTRG00000003033) #18	ZRANB1 (ENSPTRG00000003034) #19	CTBP2 (ENSPTRG00000003035) #20	ENSPTRG00000050946	TEX36 (ENSPTRG00000003037) #21	ENSPTRG00000052584	EDRF1 (ENSPTRG00000003040) #22	MMP21 (ENSPTRG00000003041) #23	UROS (ENSPTRG00000003042) #24	BCCIP (ENSPTRG00000003043) #25	DHX32 (ENSPTRG00000003044) #26	FANK1 (ENSPTRG00000029661) #27	ENSPTRG00000043029	ADAM12 (ENSPTRG00000003046) #28	C10H10orf90 (ENSPTRG00000003047) #29	DOCK1 (ENSPTRG00000003048) #31	INSYN2A (ENSPTRG00000003050) #30	NPS (ENSPTRG00000033882) #32	FOXI2 (ENSPTRG00000003052) #33	CLRN3 (ENSPTRG00000043819) #34	PTPRE (ENSPTRG00000003054) #35	MKI67 (ENSPTRG00000003055)
Human	MODERN SPECIES	1	HMX3 (ENSG00000188620)	HMX2 (ENSG00000188816)	BUB3 (ENSG00000154473) #7	GPR26 (ENSG00000154478) #9	CPXM2 (ENSG00000121898) #10	CHST15 (ENSG00000182022) #12	OAT (ENSG00000065154) #13	NKX1-2 (ENSG00000229544) #14	LHPP (ENSG00000107902) #15	FAM53B (ENSG00000189319) #16	EEF1AKMT2 (ENSG00000203791) #17	ABRAXAS2 (ENSG00000165660) #18	ZRANB1 (ENSG00000019995) #19	CTBP2 (ENSG00000175029) #20	TEX36 (ENSG00000175018) #21	EDRF1 (ENSG00000107938) #22	MMP21 (ENSG00000154485) #23	UROS (ENSG00000188690) #24	BCCIP (ENSG00000107949) #25	DHX32 (ENSG00000089876) #26	FANK1 (ENSG00000203780) #27	ADAM12 (ENSG00000148848) #28	C10orf90 (ENSG00000154493) #29	DOCK1 (ENSG00000150760) #31	INSYN2A (ENSG00000188916) #30	NPS (ENSG00000214285) #32	FOXI2 (ENSG00000186766) #33	CLRN3 (ENSG00000180745) #34	PTPRE (ENSG00000132334) #35	MKI67 (ENSG00000148773)	MGMT (ENSG00000170430) #36
Gorilla	MODERN SPECIES	1	ENSGGOG00000037837 #9	ENSGGOG00000038946	CPXM2 (ENSGGOG00000007111) #10	CHST15 (ENSGGOG00000009734) #12	OAT (ENSGGOG00000000848) #13	NKX1-2 (ENSGGOG00000042370) #14	ENSGGOG00000009416 #15	FAM53B (ENSGGOG00000001653) #16	EEF1AKMT2 (ENSGGOG00000024976) #17	ABRAXAS2 (ENSGGOG00000014025) #18	ZRANB1 (ENSGGOG00000016848) #19	ENSGGOG00000036916 ##20	CTBP2 (ENSGGOG00000007304) #20	TEX36 (ENSGGOG00000007492) #21	ENSGGOG00000038821	EDRF1 (ENSGGOG00000027465) #22	MMP21 (ENSGGOG00000011410) #23	UROS (ENSGGOG00000011415) #24	ENSGGOG00000010629 #25	DHX32 (ENSGGOG00000010637) #26	FANK1 (ENSGGOG00000005594) #27	ADAM12 (ENSGGOG00000000750) #28	C10orf90 (ENSGGOG00000003162) #29	DOCK1 (ENSGGOG00000015094) #31	INSYN2A (ENSGGOG00000006492) #30	NPS (ENSGGOG00000025181) #32	FOXI2 (ENSGGOG00000006743) #33	CLRN3 (ENSGGOG00000013278) #34	PTPRE (ENSGGOG00000004177) #35	MKI67 (ENSGGOG00000004189)	ENSGGOG00000028344
Orangutan	MODERN SPECIES	1	HMX2 (ENSPPYG00000033793)	BUB3 (ENSPPYG00000002731) #7	GPR26 (ENSPPYG00000002734) #9	CPXM2 (ENSPPYG00000002735) #10	CHST15 (ENSPPYG00000002736) #12	OAT (ENSPPYG00000002737) #13	NKX1-2 (ENSPPYG00000039436) #14	LHPP (ENSPPYG00000002740) #15	FAM53B (ENSPPYG00000002741) #16	EEF1AKMT2 (ENSPPYG00000002742) #17	ABRAXAS2 (ENSPPYG00000033191) #18	ZRANB1 (ENSPPYG00000002745) #19	CTBP2 (ENSPPYG00000002746) #20	TEX36 (ENSPPYG00000002747) #21	ENSPPYG00000035256	EDRF1 (ENSPPYG00000002749) #22	MMP21 (ENSPPYG00000002750) #23	UROS (ENSPPYG00000002751) #24	BCCIP (ENSPPYG00000002752) #25	DHX32 (ENSPPYG00000002753) #26	FANK1 (ENSPPYG00000002754) #27	ADAM12 (ENSPPYG00000002755) #28	C10orf90 (ENSPPYG00000002756) #29	DOCK1 (ENSPPYG00000002757) #31	INSYN2A (ENSPPYG00000002758) #30	NPS (ENSPPYG00000002759) #32	ENSPPYG00000002760	FOXI2 (ENSPPYG00000002837) #33	CLRN3 (ENSPPYG00000002761) #34	PTPRE (ENSPPYG00000002762) #35	MKI67 (ENSPPYG00000002763)
Gibbon	MODERN SPECIES	18	HMX2 (ENSNLEG00000033504)	BUB3 (ENSNLEG00000030093) #7	GPR26 (ENSNLEG00000030894) #9	ENSNLEG00000027584	CPXM2 (ENSNLEG00000017056) #10	ENSNLEG00000029527	CHST15 (ENSNLEG00000027714) #12	OAT (ENSNLEG00000000482) #13	LHPP (ENSNLEG00000000521) #15	FAM53B (ENSNLEG00000000535) #16	EEF1AKMT2 (ENSNLEG00000000539) #17	ABRAXAS2 (ENSNLEG00000000563) #18	ZRANB1 (ENSNLEG00000000584) #19	CTBP2 (ENSNLEG00000000608) #20	ENSNLEG00000035995	EDRF1 (ENSNLEG00000000623) #22	MMP21 (ENSNLEG00000000684) #23	UROS (ENSNLEG00000000688) #24	ENSNLEG00000000725 #25	DHX32 (ENSNLEG00000000755) #26	FANK1 (ENSNLEG00000000831) #27	ADAM12 (ENSNLEG00000000851) #28	C10orf90 (ENSNLEG00000000894) #29	INSYN2A (ENSNLEG00000000568) #30	DOCK1 (ENSNLEG00000000434) #31	NPS (ENSNLEG00000000575) #32	FOXI2 (ENSNLEG00000000577) #33	CLRN3 (ENSNLEG00000000581) #34	ENSNLEG00000031469	PTPRE (ENSNLEG00000001341) #35	MKI67 (ENSNLEG00000001417)
Cercopithecidae	ANCESTRAL SPECIES	15	ENSGT00950000183001.a.a #9	ENSGT00910000147603	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895.w #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00910000147026	ENSGT00500000045038.y.a.a	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696.ab #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00910000147969	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00910000147135
Cercopithecinae	ANCESTRAL SPECIES	15	ENSGT00950000183001.a.a #9	ENSGT00910000147603	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895.w #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00910000147026	ENSGT00500000045038.y.a.a	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696.ab #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00910000147969	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00910000147135
Cercopithecinae_a	ANCESTRAL SPECIES	14	ENSGT00950000183001.a.a #9	ENSGT00910000147603	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895.w #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00910000147026	ENSGT00500000045038.y.a.a	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696.ab #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00910000147969	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00910000147135
Cercopithecinae_b	ANCESTRAL SPECIES	14	ENSGT00950000183001.a.a #9	ENSGT00910000147603	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895.w #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00910000147026	ENSGT00500000045038.y.a.a	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696.ab #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00910000147969	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00910000147135
Olive baboon	MODERN SPECIES	2	ENSPANG00000039743	CHST15 (ENSPANG00000020324) #12	ENSPANG00000041423	OAT (ENSPANG00000020327) #13	NKX1-2 (ENSPANG00000020330) #14	LHPP (ENSPANG00000020332) #15	FAM53B (ENSPANG00000045793) #16	EEF1AKMT2 (ENSPANG00000020335) #17	ABRAXAS2 (ENSPANG00000020336) #18	ENSPANG00000037231	ZRANB1 (ENSPANG00000020320) #19	CTBP2 (ENSPANG00000020276) #20	ENSPANG00000040973	ENSPANG00000046387	TEX36 (ENSPANG00000020277) #21	EDRF1 (ENSPANG00000020279) #22	MMP21 (ENSPANG00000020288) #23	UROS (ENSPANG00000020291) #24	ENSPANG00000020319 #25	DHX32 (ENSPANG00000020318) #26	FANK1 (ENSPANG00000020263) #27	ADAM12 (ENSPANG00000020265) #28	ENSPANG00000043403	C10orf90 (ENSPANG00000020261) #29	INSYN2A (ENSPANG00000020241) #30	DOCK1 (ENSPANG00000020237) #31	NPS (ENSPANG00000020243) #32	FOXI2 (ENSPANG00000020235) #33	ENSPANG00000050452	CLRN3 (ENSPANG00000020194) #34	PTPRE (ENSPANG00000020198) #35
Cercopithecinae_d	ANCESTRAL SPECIES	64	ENSGT00950000183001.a.a #9	ENSGT00910000147603	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895.w #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00910000147026	ENSGT00500000045038.y.a.a	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696.ab #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00910000147969	ENSGT00940000154974 #31	ENSGT00530000063787.B #30
Sooty mangabey	MODERN SPECIES	527	GPR26 (ENSCATG00000033714) #9	ENSCATG00000008393	CPXM2 (ENSCATG00000023297) #10	CHST15 (ENSCATG00000035207) #12	OAT (ENSCATG00000044088) #13	NKX1-2 (ENSCATG00000044548) #14	LHPP (ENSCATG00000045044) #15	FAM53B (ENSCATG00000038702) #16	EEF1AKMT2 (ENSCATG00000030673) #17	ABRAXAS2 (ENSCATG00000014044) #18	ZRANB1 (ENSCATG00000035796) #19	CTBP2 (ENSCATG00000043867) #20	ENSCATG00000029412	ENSCATG00000033653	TEX36 (ENSCATG00000033369) #21	EDRF1 (ENSCATG00000038534) #22	MMP21 (ENSCATG00000038141) #23	UROS (ENSCATG00000033517) #24	ENSCATG00000023435 #25	DHX32 (ENSCATG00000035202) #26	FANK1 (ENSCATG00000033319) #27	ADAM12 (ENSCATG00000044424) #28	C10orf90 (ENSCATG00000034236) #29	ENSCATG00000008502	DOCK1 (ENSCATG00000035320) #31	INSYN2A (ENSCATG00000039561) #30
Drill	MODERN SPECIES	940	GPR26 (ENSMLEG00000038180) #9	ENSMLEG00000022267	CPXM2 (ENSMLEG00000033633) #10	CHST15 (ENSMLEG00000036608) #12	OAT (ENSMLEG00000032966) #13	NKX1-2 (ENSMLEG00000032679) #14	LHPP (ENSMLEG00000027663) #15	FAM53B (ENSMLEG00000035214) #16	EEF1AKMT2 (ENSMLEG00000036372) #17	ABRAXAS2 (ENSMLEG00000008136) #18	ZRANB1 (ENSMLEG00000039002) #19	CTBP2 (ENSMLEG00000044401) #20	ENSMLEG00000007460	ENSMLEG00000002979	TEX36 (ENSMLEG00000027814) #21	EDRF1 (ENSMLEG00000028508) #22	MMP21 (ENSMLEG00000028989) #23	UROS (ENSMLEG00000033870) #24	ENSMLEG00000043362 #25	DHX32 (ENSMLEG00000036456) #26	FANK1 (ENSMLEG00000031951) #27	ADAM12 (ENSMLEG00000037033) #28	C10orf90 (ENSMLEG00000040455) #29	ENSMLEG00000021109
Macaca	ANCESTRAL SPECIES	11	ENSGT00950000183001.a.a #9	ENSGT00910000147603	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895.w #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00910000147026	ENSGT00500000045038.y.a.a	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696.ab #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00910000147135	ENSGT00940000154352.B
Pig-tailed macaque	MODERN SPECIES	92	ENSMNEG00000012185	CPXM2 (ENSMNEG00000042070) #10	CHST15 (ENSMNEG00000036317) #12	OAT (ENSMNEG00000044251) #13	NKX1-2 (ENSMNEG00000036634) #14	LHPP (ENSMNEG00000028552) #15	FAM53B (ENSMNEG00000044479) #16	ENSMNEG00000024668	EEF1AKMT2 (ENSMNEG00000029600) #17	ABRAXAS2 (ENSMNEG00000040445) #18	ZRANB1 (ENSMNEG00000030081) #19	CTBP2 (ENSMNEG00000043278) #20	ENSMNEG00000020291	ENSMNEG00000045518	TEX36 (ENSMNEG00000036041) #21	EDRF1 (ENSMNEG00000030177) #22	MMP21 (ENSMNEG00000044609) #23	UROS (ENSMNEG00000035411) #24	ENSMNEG00000032819 #25	DHX32 (ENSMNEG00000044757) #26	FANK1 (ENSMNEG00000029956) #27	ADAM12 (ENSMNEG00000038213) #28	C10orf90 (ENSMNEG00000036885) #29	DOCK1 (ENSMNEG00000034603) #31	INSYN2A (ENSMNEG00000026944) #30	NPS (ENSMNEG00000027536) #32	FOXI2 (ENSMNEG00000029819) #33	CLRN3 (ENSMNEG00000042511) #34	PTPRE (ENSMNEG00000032259) #35	ENSMNEG00000039868	MKI67 (ENSMNEG00000032752)
Macaca_a	ANCESTRAL SPECIES	13	ENSGT00940000160392	ENSGT00950000183091.A.a.i.a #7	ENSGT00950000183001.a.a #9	ENSGT00910000147603	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895.w #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696.ab #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00940000163244.d.b.b.a.b.a.a
Crab-eating macaque	MODERN SPECIES	19	BUB3 (ENSMFAG00000044849) #7	ENSMFAG00000053162	GPR26 (ENSMFAG00000056569) #9	CPXM2 (ENSMFAG00000002567) #10	ENSMFAG00000049060	CHST15 (ENSMFAG00000032966) #12	ENSMFAG00000038400 #13	NKX1-2 (ENSMFAG00000061403) #14	LHPP (ENSMFAG00000039017) #15	FAM53B (ENSMFAG00000030017) #16	ENSMFAG00000002265 #17	ABRAXAS2 (ENSMFAG00000035172) #18	ZRANB1 (ENSMFAG00000031080) #19	CTBP2 (ENSMFAG00000045892) #20	TEX36 (ENSMFAG00000000897) #21	EDRF1 (ENSMFAG00000003945) #22	MMP21 (ENSMFAG00000001603) #23	UROS (ENSMFAG00000043500) #24	ENSMFAG00000041850 #25	DHX32 (ENSMFAG00000045315) #26	FANK1 (ENSMFAG00000032085) #27	ADAM12 (ENSMFAG00000039461) #28	C10orf90 (ENSMFAG00000041837) #29	DOCK1 (ENSMFAG00000045941) #31	INSYN2A (ENSMFAG00000036937) #30	NPS (ENSMFAG00000050665) #32	FOXI2 (ENSMFAG00000057445) #33	CLRN3 (ENSMFAG00000003701) #34	PTPRE (ENSMFAG00000003527) #35	MKI67 (ENSMFAG00000037072)	ENSMFAG00000053394
Rhesus	MODERN SPECIES	19	BUB3 (ENSMMUG00000003092) #7	GPR26 (ENSMMUG00000053995) #9	CPXM2 (ENSMMUG00000020346) #10	ENSMMUG00000056443	ENSMMUG00000046183	CHST15 (ENSMMUG00000010115) #12	OAT (ENSMMUG00000010485) #13	NKX1-2 (ENSMMUG00000054006) #14	LHPP (ENSMMUG00000015215) #15	FAM53B (ENSMMUG00000015216) #16	EEF1AKMT2 (ENSMMUG00000015217) #17	ABRAXAS2 (ENSMMUG00000012501) #18	ZRANB1 (ENSMMUG00000022028) #19	CTBP2 (ENSMMUG00000022032) #20	TEX36 (ENSMMUG00000021270) #21	EDRF1 (ENSMMUG00000008535) #22	MMP21 (ENSMMUG00000008537) #23	UROS (ENSMMUG00000008539) #24	BCCIP (ENSMMUG00000008541) #25	DHX32 (ENSMMUG00000008542) #26	FANK1 (ENSMMUG00000009655) #27	ADAM12 (ENSMMUG00000009661) #28	C9H10orf90 (ENSMMUG00000009663) #29	DOCK1 (ENSMMUG00000018547) #31	INSYN2A (ENSMMUG00000018550) #30	NPS (ENSMMUG00000059060) #32	FOXI2 (ENSMMUG00000052332) #33	CLRN3 (ENSMMUG00000057106) #34	PTPRE (ENSMMUG00000005383) #35	MKI67 (ENSMMUG00000044121)	ENSMMUG00000063244
Vervet Monkey	MODERN SPECIES	28	HMX3 (ENSCSAG00000004552)	HMX2 (ENSCSAG00000004550)	BUB3 (ENSCSAG00000004547) #7	GPR26 (ENSCSAG00000004541) #9	CPXM2 (ENSCSAG00000004539) #10	CHST15 (ENSCSAG00000004534) #12	OAT (ENSCSAG00000004531) #13	NKX1-2 (ENSCSAG00000004528) #14	LHPP (ENSCSAG00000004526) #15	FAM53B (ENSCSAG00000004523) #16	EEF1AKMT2 (ENSCSAG00000004519) #17	ABRAXAS2 (ENSCSAG00000004517) #18	ZRANB1 (ENSCSAG00000004507) #19	ENSCSAG00000004503 #20	TEX36 (ENSCSAG00000004500) #21	EDRF1 (ENSCSAG00000004498) #22	MMP21 (ENSCSAG00000004494) #23	UROS (ENSCSAG00000004491) #24	ENSCSAG00000004489 #25	DHX32 (ENSCSAG00000004486) #26	FANK1 (ENSCSAG00000004483) #27	ADAM12 (ENSCSAG00000004479) #28	C10orf90 (ENSCSAG00000004473) #29	DOCK1 (ENSCSAG00000004464) #31	INSYN2A (ENSCSAG00000004457) #30	NPS (ENSCSAG00000004454) #32	FOXI2 (ENSCSAG00000004451) #33	CLRN3 (ENSCSAG00000004448) #34	PTPRE (ENSCSAG00000004446) #35	MKI67 (ENSCSAG00000004442)	MGMT (ENSCSAG00000004436) #36
Rhinopithecus	ANCESTRAL SPECIES	34	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895.w #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00910000147026	ENSGT00500000045038.y.a.a	ENSGT00390000012491 #21	ENSGT00950000182987.c.a.a.w	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696.ab #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00910000148575	ENSGT00910000147969	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35
Golden snub-nosed monkey	MODERN SPECIES	813	CPXM2 (ENSRROG00000034798) #10	CHST15 (ENSRROG00000036235) #12	OAT (ENSRROG00000031943) #13	NKX1-2 (ENSRROG00000040338) #14	LHPP (ENSRROG00000042763) #15	FAM53B (ENSRROG00000038434) #16	EEF1AKMT2 (ENSRROG00000044657) #17	ABRAXAS2 (ENSRROG00000041463) #18	ZRANB1 (ENSRROG00000039732) #19	ENSRROG00000012768	CTBP2 (ENSRROG00000041660) #20	ENSRROG00000028949	ENSRROG00000031792	TEX36 (ENSRROG00000037669) #21	ENSRROG00000035404	EDRF1 (ENSRROG00000030749) #22	MMP21 (ENSRROG00000042566) #23	UROS (ENSRROG00000044070) #24	ENSRROG00000031223 #25	DHX32 (ENSRROG00000033782) #26	FANK1 (ENSRROG00000038660) #27	ADAM12 (ENSRROG00000033634) #28	C10orf90 (ENSRROG00000032189) #29	ENSRROG00000003561	ENSRROG00000035275	DOCK1 (ENSRROG00000011857) #31	INSYN2A (ENSRROG00000041877) #30	NPS (ENSRROG00000039269) #32	FOXI2 (ENSRROG00000040158) #33	CLRN3 (ENSRROG00000004625) #34	PTPRE (ENSRROG00000031851) #35
Black snub-nosed monkey	MODERN SPECIES	1932	GPR26 (ENSRBIG00000014711) #9	CPXM2 (ENSRBIG00000028836) #10	CHST15 (ENSRBIG00000042844) #12	OAT (ENSRBIG00000020634) #13	NKX1-2 (ENSRBIG00000035041) #14	LHPP (ENSRBIG00000029121) #15	FAM53B (ENSRBIG00000035026) #16	EEF1AKMT2 (ENSRBIG00000032554) #17	ABRAXAS2 (ENSRBIG00000039178) #18	ENSRBIG00000028822	ZRANB1 (ENSRBIG00000012257) #19	CTBP2 (ENSRBIG00000041430) #20	ENSRBIG00000029543	ENSRBIG00000028389	TEX36 (ENSRBIG00000033525) #21	EDRF1 (ENSRBIG00000028127) #22	MMP21 (ENSRBIG00000029325) #23	UROS (ENSRBIG00000030447) #24	ENSRBIG00000043221 #25	DHX32 (ENSRBIG00000044894) #26	FANK1 (ENSRBIG00000029396) #27	ADAM12 (ENSRBIG00000036110) #28	ENSRBIG00000036137	C10orf90 (ENSRBIG00000028818) #29	INSYN2A (ENSRBIG00000030585) #30	DOCK1 (ENSRBIG00000043711) #31	NPS (ENSRBIG00000038974) #32	FOXI2 (ENSRBIG00000035968) #33	CLRN3 (ENSRBIG00000033005) #34	ENSRBIG00000029903	PTPRE (ENSRBIG00000038138) #35
Platyrrhini	ANCESTRAL SPECIES	14	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895.w #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696.bb.a #25	ENSGT00940000157227 #26	ENSGT00960000187700	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B
Cebidae	ANCESTRAL SPECIES	17	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895.w #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696.cb #25	ENSGT00940000157227 #26	ENSGT00960000187700	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00530000063787.B #30	ENSGT00940000154974 #31	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B
Cebidae_a	ANCESTRAL SPECIES	13	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895.w #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696.cb #25	ENSGT00940000157227 #26	ENSGT00960000187700	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00530000063787.B #30	ENSGT00940000154974 #31	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B
Bolivian squirrel monkey	MODERN SPECIES	47	HMX3 (ENSSBOG00000023320)	HMX2 (ENSSBOG00000021232)	BUB3 (ENSSBOG00000025883) #7	GPR26 (ENSSBOG00000029415) #9	CPXM2 (ENSSBOG00000036010) #10	CHST15 (ENSSBOG00000027985) #12	OAT (ENSSBOG00000020910) #13	NKX1-2 (ENSSBOG00000018166) #14	LHPP (ENSSBOG00000030027) #15	FAM53B (ENSSBOG00000025047) #16	EEF1AKMT2 (ENSSBOG00000023032) #17	ABRAXAS2 (ENSSBOG00000034509) #18	ZRANB1 (ENSSBOG00000034635) #19	CTBP2 (ENSSBOG00000033291) #20	TEX36 (ENSSBOG00000022299) #21	EDRF1 (ENSSBOG00000011981) #22	MMP21 (ENSSBOG00000020252) #23	UROS (ENSSBOG00000032791) #24	ENSSBOG00000020651 #25	DHX32 (ENSSBOG00000034546) #26	ENSSBOG00000029082	FANK1 (ENSSBOG00000021643) #27	ADAM12 (ENSSBOG00000031448) #28	C10orf90 (ENSSBOG00000034014) #29	INSYN2A (ENSSBOG00000025092) #30	DOCK1 (ENSSBOG00000020583) #31	NPS (ENSSBOG00000031161) #32	FOXI2 (ENSSBOG00000016469) #33	CLRN3 (ENSSBOG00000035712) #34	ENSSBOG00000019430	PTPRE (ENSSBOG00000029233) #35
Capuchin	MODERN SPECIES	107															TEX36 (ENSCCAG00000021776) #21	EDRF1 (ENSCCAG00000028724) #22	MMP21 (ENSCCAG00000024649) #23	UROS (ENSCCAG00000033376) #24	BCCIP (ENSCCAG00000028010) #25	DHX32 (ENSCCAG00000023341) #26	ENSCCAG00000015509	FANK1 (ENSCCAG00000021326) #27	ADAM12 (ENSCCAG00000026413) #28	C10orf90 (ENSCCAG00000033735) #29	ENSCCAG00000028392	INSYN2A (ENSCCAG00000030151) #30	DOCK1 (ENSCCAG00000034899) #31	NPS (ENSCCAG00000027458) #32	FOXI2 (ENSCCAG00000030117) #33	CLRN3 (ENSCCAG00000031649) #34	PTPRE (ENSCCAG00000024277) #35
Marmoset	MODERN SPECIES	3	GPR26 (ENSCJAG00000008190) #9	CPXM2 (ENSCJAG00000046273) #10	ENSCJAG00000082547	CHST15 (ENSCJAG00000010285) #12	ENSCJAG00000012633 #13	NKX1-2 (ENSCJAG00000068730) #14	LHPP (ENSCJAG00000012614) #15	FAM53B (ENSCJAG00000012593) #16	EEF1AKMT2 (ENSCJAG00000078355) #17	ABRAXAS2 (ENSCJAG00000068604) #18	ZRANB1 (ENSCJAG00000012573) #19	CTBP2 (ENSCJAG00000012539) #20	ENSCJAG00000074181	ENSCJAG00000079705	TEX36 (ENSCJAG00000071416) #21	EDRF1 (ENSCJAG00000012481) #22	MMP21 (ENSCJAG00000012475) #23	UROS (ENSCJAG00000012453) #24	BCCIP (ENSCJAG00000012411) #25	DHX32 (ENSCJAG00000012356) #26	FANK1 (ENSCJAG00000012335) #27	ADAM12 (ENSCJAG00000012314) #28	ENSCJAG00000084717	C10orf90 (ENSCJAG00000012285) #29	DOCK1 (ENSCJAG00000014082) #31	INSYN2A (ENSCJAG00000014231) #30	NPS (ENSCJAG00000059482) #32	FOXI2 (ENSCJAG00000014240) #33	CLRN3 (ENSCJAG00000014242) #34	PTPRE (ENSCJAG00000014247) #35	MKI67 (ENSCJAG00000014323)
Mas night monkey	MODERN SPECIES	802	HMX3 (ENSANAG00000024547)	HMX2 (ENSANAG00000036077)	BUB3 (ENSANAG00000034868) #7	GPR26 (ENSANAG00000025234) #9	CPXM2 (ENSANAG00000033303) #10	CHST15 (ENSANAG00000036170) #12	OAT (ENSANAG00000027976) #13	NKX1-2 (ENSANAG00000027849) #14	LHPP (ENSANAG00000030254) #15	FAM53B (ENSANAG00000023364) #16	EEF1AKMT2 (ENSANAG00000020212) #17	ABRAXAS2 (ENSANAG00000036240) #18	ZRANB1 (ENSANAG00000028845) #19	CTBP2 (ENSANAG00000023803) #20	TEX36 (ENSANAG00000020229) #21	EDRF1 (ENSANAG00000029305) #22	MMP21 (ENSANAG00000034665) #23	UROS (ENSANAG00000022312) #24	ENSANAG00000024168 #25	DHX32 (ENSANAG00000021728) #26	ENSANAG00000019289 #27
Tarsier	MODERN SPECIES	4362															TEX36 (ENSTSYG00000001467) #21	EDRF1 (ENSTSYG00000012171) #22	MMP21 (ENSTSYG00000012175) #23	UROS (ENSTSYG00000004160) #24	BCCIP (ENSTSYG00000008568) #25	DHX32 (ENSTSYG00000008572) #26	FANK1 (ENSTSYG00000000829) #27	ADAM12 (ENSTSYG00000000830) #28
Strepsirrhini	ANCESTRAL SPECIES	11	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00980000201701	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B
Lemuriformes	ANCESTRAL SPECIES	7	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00980000201701	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B
Lemuriformes_a	ANCESTRAL SPECIES	42	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.f #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00980000201701	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00390000015799 #36
Greater bamboo lemur	MODERN SPECIES	335											ENSPSMG00000003017 #17	ABRAXAS2 (ENSPSMG00000003031) #18	ZRANB1 (ENSPSMG00000003040) #19	CTBP2 (ENSPSMG00000003104) #20	TEX36 (ENSPSMG00000003113) #21	EDRF1 (ENSPSMG00000003196) #22	MMP21 (ENSPSMG00000003262) #23	UROS (ENSPSMG00000003340) #24	BCCIP (ENSPSMG00000003404) #25	DHX32 (ENSPSMG00000003428) #26	FANK1 (ENSPSMG00000003450) #27	ADAM12 (ENSPSMG00000003557) #28	ENSPSMG00000003686 #29	ENSPSMG00000003688	DOCK1 (ENSPSMG00000003931) #31	INSYN2A (ENSPSMG00000004094) #30	NPS (ENSPSMG00000004108) #32	ENSPSMG00000004118 #33	CLRN3 (ENSPSMG00000004128) #34	PTPRE (ENSPSMG00000004258) #35	MGMT (ENSPSMG00000004282) #36
Coquerels sifaka	MODERN SPECIES	625													ZRANB1 (ENSPCOG00000020131) #19	CTBP2 (ENSPCOG00000020711) #20	TEX36 (ENSPCOG00000014325) #21	EDRF1 (ENSPCOG00000026572) #22	MMP21 (ENSPCOG00000024257) #23	UROS (ENSPCOG00000021066) #24	BCCIP (ENSPCOG00000012392) #25	DHX32 (ENSPCOG00000023363) #26	FANK1 (ENSPCOG00000015541) #27	ADAM12 (ENSPCOG00000020813) #28	ENSPCOG00000017455 #29	INSYN2A (ENSPCOG00000020756) #30	DOCK1 (ENSPCOG00000022132) #31	NPS (ENSPCOG00000016832) #32	FOXI2 (ENSPCOG00000015092) #33	CLRN3 (ENSPCOG00000016328) #34	PTPRE (ENSPCOG00000021883) #35
Mouse lemur	MODERN SPECIES	6	HMX3 (ENSMICG00000000467)	HMX2 (ENSMICG00000000468)	BUB3 (ENSMICG00000000469) #7	GPR26 (ENSMICG00000045590) #9	CPXM2 (ENSMICG00000008842) #10	CHST15 (ENSMICG00000008853) #12	OAT (ENSMICG00000003894) #13	NKX1-2 (ENSMICG00000046032) #14	LHPP (ENSMICG00000003900) #15	FAM53B (ENSMICG00000003907) #16	EEF1AKMT2 (ENSMICG00000029191) #17	ABRAXAS2 (ENSMICG00000031916) #18	ZRANB1 (ENSMICG00000000273) #19	CTBP2 (ENSMICG00000000275) #20	TEX36 (ENSMICG00000026931) #21	EDRF1 (ENSMICG00000006179) #22	MMP21 (ENSMICG00000006186) #23	UROS (ENSMICG00000006188) #24	BCCIP (ENSMICG00000006191) #25	DHX32 (ENSMICG00000006199) #26	FANK1 (ENSMICG00000006206) #27	ADAM12 (ENSMICG00000006210) #28	C10orf90 (ENSMICG00000006223) #29	DOCK1 (ENSMICG00000006454) #31	INSYN2A (ENSMICG00000034810) #30	NPS (ENSMICG00000031912) #32	FOXI2 (ENSMICG00000012926) #33	CLRN3 (ENSMICG00000012930) #34	PTPRE (ENSMICG00000044779) #35	MKI67 (ENSMICG00000042135)	MGMT (ENSMICG00000044094) #36
Bushbaby	MODERN SPECIES	190	ACADSB (ENSOGAG00000008715)	HMX3 (ENSOGAG00000033826)	HMX2 (ENSOGAG00000011247)	BUB3 (ENSOGAG00000011249) #7	GPR26 (ENSOGAG00000015968) #9	CPXM2 (ENSOGAG00000015976) #10	CHST15 (ENSOGAG00000004496) #12	OAT (ENSOGAG00000011006) #13	LHPP (ENSOGAG00000011008) #15	FAM53B (ENSOGAG00000033416) #16	ENSOGAG00000011015 #17	ABRAXAS2 (ENSOGAG00000011022) #18	ZRANB1 (ENSOGAG00000008345) #19	ENSOGAG00000024152 ##20	TEX36 (ENSOGAG00000010883) #21	EDRF1 (ENSOGAG00000010889) #22	MMP21 (ENSOGAG00000010897) #23	UROS (ENSOGAG00000010900) #24	BCCIP (ENSOGAG00000010901) #25	DHX32 (ENSOGAG00000010905) #26	FANK1 (ENSOGAG00000015521) #27	ADAM12 (ENSOGAG00000015525) #28	C10orf90 (ENSOGAG00000015528) #29	INSYN2A (ENSOGAG00000025156) #30	DOCK1 (ENSOGAG00000007521) #31	FOXI2 (ENSOGAG00000005361) #33	ENSOGAG00000027739	CLRN3 (ENSOGAG00000007530) #34	PTPRE (ENSOGAG00000012722) #35	ENSOGAG00000032564	EBF3 (ENSOGAG00000007572) #37
Laurasiatheria	ANCESTRAL SPECIES	14	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00980000201701	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000014797 #22
Hedgehog	MODERN SPECIES	1082																EDRF1 (ENSEEUG00000008209) #22
Laurasiatheria_a	ANCESTRAL SPECIES	15	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00980000201701	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B
Artiodactyla	ANCESTRAL SPECIES	14	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00980000201701	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Suina	ANCESTRAL SPECIES	6	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399.e #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37
Chacoan peccary	MODERN SPECIES	955	ACADSB (ENSCWAG00000018050)	HMX3 (ENSCWAG00000018030)	HMX2 (ENSCWAG00000018003)	BUB3 (ENSCWAG00000017831) #7	CPXM2 (ENSCWAG00000017772) #10	CHST15 (ENSCWAG00000017720) #12	OAT (ENSCWAG00000017679) #13	NKX1-2 (ENSCWAG00000017640) #14	LHPP (ENSCWAG00000017585) #15	FAM53B (ENSCWAG00000017561) #16	ENSCWAG00000017539 #17	ENSCWAG00000017360 #18	ZRANB1 (ENSCWAG00000017307) #19	CTBP2 (ENSCWAG00000017203) #20	TEX36 (ENSCWAG00000017160) #21	EDRF1 (ENSCWAG00000017083) #22	UROS (ENSCWAG00000017033) #24	BCCIP (ENSCWAG00000017003) #25	DHX32 (ENSCWAG00000016967) #26	FANK1 (ENSCWAG00000016853) #27	ADAM12 (ENSCWAG00000016814) #28	C10orf90 (ENSCWAG00000016711) #29	INSYN2A (ENSCWAG00000016657) #30	DOCK1 (ENSCWAG00000016450) #31	NPS (ENSCWAG00000016401) #32	FOXI2 (ENSCWAG00000016377) #33	CLRN3 (ENSCWAG00000016340) #34	PTPRE (ENSCWAG00000016042) #35	MGMT (ENSCWAG00000015990) #36	EBF3 (ENSCWAG00000015830) #37	ENSCWAG00000015800
Pig	MODERN SPECIES	5	BUB3 (ENSSSCG00000010726) #7	GPR26 (ENSSSCG00000010727) #9	CPXM2 (ENSSSCG00000010728) #10	ENSSSCG00000042079	CHST15 (ENSSSCG00000029482) #12	ENSSSCG00000010734 #13	NKX1-2 (ENSSSCG00000010733) #14	LHPP (ENSSSCG00000010735) #15	FAM53B (ENSSSCG00000010732) #16	EEF1AKMT2 (ENSSSCG00000056519) #17	ABRAXAS2 (ENSSSCG00000010737) #18	ZRANB1 (ENSSSCG00000010738) #19	CTBP2 (ENSSSCG00000010739) #20	ENSSSCG00000045428	TEX36 (ENSSSCG00000032832) #21	EDRF1 (ENSSSCG00000010741) #22	UROS (ENSSSCG00000010742) #24	BCCIP (ENSSSCG00000010743) #25	DHX32 (ENSSSCG00000010744) #26	FANK1 (ENSSSCG00000010745) #27	ADAM12 (ENSSSCG00000010746) #28	C10orf90 (ENSSSCG00000010747) #29	DOCK1 (ENSSSCG00000035045) #31	INSYN2A (ENSSSCG00000031345) #30	NPS (ENSSSCG00000053344) #32	FOXI2 (ENSSSCG00000010752) #33	CLRN3 (ENSSSCG00000010753) #34	PTPRE (ENSSSCG00000010755) #35	ENSSSCG00000026302	MGMT (ENSSSCG00000010756) #36	ENSSSCG00000049746
Artiodactyla_a	ANCESTRAL SPECIES	14	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00980000201701	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Artiodactyla_b	ANCESTRAL SPECIES	13	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00980000201701	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Cetacea	ANCESTRAL SPECIES	15	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00940000154277.a.b.b.m.a.b	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37
Odontoceti	ANCESTRAL SPECIES	14	ENSGT00390000005104.j.b	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00390000006865.j.b	ENSGT00940000154277.a.b.b.m.a.b	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37
Odontoceti_a	ANCESTRAL SPECIES	11	ENSGT00390000005104.j.b	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00390000006865.j.b	ENSGT00940000154277.a.b.b.m.a.b	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37
Odontoceti_b	ANCESTRAL SPECIES	14	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00390000006865.j.b	ENSGT00940000154277.a.b.b.m.a.b	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.g.b #20	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37
Monodontidae	ANCESTRAL SPECIES	14	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00390000006865.j.b	ENSGT00940000154277.a.b.b.m.a.b	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.g.b #20	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37
Beluga whale	MODERN SPECIES	65	GPR26 (ENSDLEG00000019758) #9	CPXM2 (ENSDLEG00000019749) #10	CHST15 (ENSDLEG00000019744) #12	ENSDLEG00000019741	ENSDLEG00000019738	OAT (ENSDLEG00000019701) #13	NKX1-2 (ENSDLEG00000019691) #14	LHPP (ENSDLEG00000019685) #15	FAM53B (ENSDLEG00000019682) #16	ENSDLEG00000019676 #17	ABRAXAS2 (ENSDLEG00000019673) #18	ENSDLEG00000019671	ZRANB1 (ENSDLEG00000019649) #19	CTBP2 (ENSDLEG00000019641) #20	ENSDLEG00000019627 #21	EDRF1 (ENSDLEG00000019607) #22	UROS (ENSDLEG00000019535) #24	BCCIP (ENSDLEG00000019523) #25	DHX32 (ENSDLEG00000019517) #26	ENSDLEG00000019506 #27	ADAM12 (ENSDLEG00000019463) #28	FAM196A (ENSDLEG00000019456) #30	DOCK1 (ENSDLEG00000011005) #31	FOXI2 (ENSDLEG00000010310) #33	CLRN3 (ENSDLEG00000010291) #34	PTPRE (ENSDLEG00000010238) #35	ENSDLEG00000010179	MGMT (ENSDLEG00000010162) #36	EBF3 (ENSDLEG00000010101) #37	ENSDLEG00000010080	GLRX3 (ENSDLEG00000010019)
Narwhal	MODERN SPECIES	311	GPR26 (ENSMMNG00015021467) #9	CPXM2 (ENSMMNG00015021491) #10	CHST15 (ENSMMNG00015021516) #12	ENSMMNG00015021529	ENSMMNG00015021538	OAT (ENSMMNG00015021545) #13	NKX1-2 (ENSMMNG00015021558) #14	LHPP (ENSMMNG00015021572) #15	FAM53B (ENSMMNG00015021592) #16	EEF1AKMT2 (ENSMMNG00015021603) #17	ABRAXAS2 (ENSMMNG00015021615) #18	ZRANB1 (ENSMMNG00015021633) #19	ENSMMNG00015021648	CTBP2 (ENSMMNG00015021659) #20	TEX36 (ENSMMNG00015013691) #21	EDRF1 (ENSMMNG00015013719) #22	ENSMMNG00015013747 #24	BCCIP (ENSMMNG00015013777) #25	DHX32 (ENSMMNG00015013805) #26	FANK1 (ENSMMNG00015013830) #27	ADAM12 (ENSMMNG00015013858) #28	C10orf90 (ENSMMNG00015013894) #29	DOCK1 (ENSMMNG00015013945) #31	INSYN2A (ENSMMNG00015014035) #30	NPS (ENSMMNG00015014047) #32	FOXI2 (ENSMMNG00015014054) #33	CLRN3 (ENSMMNG00015014067) #34	PTPRE (ENSMMNG00015014091) #35	ENSMMNG00015014154	ENSMMNG00015014185 #36	EBF3 (ENSMMNG00015014202) #37
Vaquita	MODERN SPECIES	7	ENSPSNG00000004804	GPR26 (ENSPSNG00000004875) #9	CPXM2 (ENSPSNG00000004901) #10	CHST15 (ENSPSNG00000004925) #12	ENSPSNG00000004944	OAT (ENSPSNG00000004965) #13	NKX1-2 (ENSPSNG00000004996) #14	LHPP (ENSPSNG00000005018) #15	FAM53B (ENSPSNG00000005072) #16	EEF1AKMT2 (ENSPSNG00000005092) #17	ABRAXAS2 (ENSPSNG00000005107) #18	ZRANB1 (ENSPSNG00000005126) #19	ENSPSNG00000005152	CTBP2 (ENSPSNG00000005179) #20	TEX36 (ENSPSNG00000005233) #21	EDRF1 (ENSPSNG00000005270) #22	ENSPSNG00000005318 #24	BCCIP (ENSPSNG00000005355) #25	DHX32 (ENSPSNG00000005385) #26	FANK1 (ENSPSNG00000005421) #27	ADAM12 (ENSPSNG00000005500) #28	C10orf90 (ENSPSNG00000005546) #29	DOCK1 (ENSPSNG00000006308) #31	INSYN2A (ENSPSNG00000008515) #30	NPS (ENSPSNG00000008571) #32	FOXI2 (ENSPSNG00000008601) #33	CLRN3 (ENSPSNG00000008648) #34	PTPRE (ENSPSNG00000008721) #35	ENSPSNG00000008949	MGMT (ENSPSNG00000008978) #36	EBF3 (ENSPSNG00000009038) #37
Dolphin	MODERN SPECIES	2035															TEX36 (ENSTTRG00000003169) #21	EDRF1 (ENSTTRG00000003170) #22	UROS (ENSTTRG00000003172) #24	BCCIP (ENSTTRG00000003173) #25	DHX32 (ENSTTRG00000003175) #26
Sperm whale	MODERN SPECIES	12	ACADSB (ENSPCTG00005004501)	HMX3 (ENSPCTG00005004538)	HMX2 (ENSPCTG00005004556)	BUB3 (ENSPCTG00005004599) #7	ENSPCTG00005004662	GPR26 (ENSPCTG00005004687) #9	CPXM2 (ENSPCTG00005004720) #10	CHST15 (ENSPCTG00005004768) #12	ENSPCTG00005004794	FAM53B (ENSPCTG00005004807) #16	EEF1AKMT2 (ENSPCTG00005004829) #17	ABRAXAS2 (ENSPCTG00005004863) #18	ZRANB1 (ENSPCTG00005004892) #19	CTBP2 (ENSPCTG00005004973) #20	TEX36 (ENSPCTG00005005162) #21	EDRF1 (ENSPCTG00005005201) #22	UROS (ENSPCTG00005005361) #24	BCCIP (ENSPCTG00005005607) #25	DHX32 (ENSPCTG00005005668) #26	FANK1 (ENSPCTG00005005751) #27	ENSPCTG00005005820	ADAM12 (ENSPCTG00005005893) #28	C10orf90 (ENSPCTG00005006168) #29	ENSPCTG00005006686 #31	INSYN2A (ENSPCTG00005012937) #30	ENSPCTG00005013009	NPS (ENSPCTG00005013108) #32	FOXI2 (ENSPCTG00005013187) #33	CLRN3 (ENSPCTG00005013268) #34	ENSPCTG00005013336	PTPRE (ENSPCTG00005013394) #35
Blue whale	MODERN SPECIES	7	GPR26 (ENSBMSG00010014443) #9	CPXM2 (ENSBMSG00010014404) #10	CHST15 (ENSBMSG00010014379) #12	ENSBMSG00010014351	ENSBMSG00010014326	OAT (ENSBMSG00010014300) #13	NKX1-2 (ENSBMSG00010014273) #14	ENSBMSG00010014254	LHPP (ENSBMSG00010014228) #15	FAM53B (ENSBMSG00010014196) #16	EEF1AKMT2 (ENSBMSG00010014167) #17	ABRAXAS2 (ENSBMSG00010014139) #18	ZRANB1 (ENSBMSG00010014072) #19	CTBP2 (ENSBMSG00010013957) #20	TEX36 (ENSBMSG00010013896) #21	EDRF1 (ENSBMSG00010013766) #22	ENSBMSG00010013691 #24	BCCIP (ENSBMSG00010013666) #25	DHX32 (ENSBMSG00010013653) #26	FANK1 (ENSBMSG00010013642) #27	ADAM12 (ENSBMSG00010013613) #28	C10orf90 (ENSBMSG00010013589) #29	INSYN2A (ENSBMSG00010013574) #30	ENSBMSG00010013567	DOCK1 (ENSBMSG00010013502) #31	NPS (ENSBMSG00010013450) #32	FOXI2 (ENSBMSG00010013441) #33	CLRN3 (ENSBMSG00010013416) #34	ENSBMSG00010013407	PTPRE (ENSBMSG00010013338) #35	MGMT (ENSBMSG00010013292) #36
Pecora	ANCESTRAL SPECIES	12	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00980000201701	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Percora_a	ANCESTRAL SPECIES	14	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00980000201701	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Bovidae	ANCESTRAL SPECIES	24	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00980000201701	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Bovinae	ANCESTRAL SPECIES	22	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00440000038430.j.b	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00980000201701	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B
Bos	ANCESTRAL SPECIES	23	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00440000038430.j.b	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00980000201701	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B
Bos_a	ANCESTRAL SPECIES	17	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00440000038430.j.b	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00980000201701	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B
Domestic yak	MODERN SPECIES	17	HMX2 (ENSBGRG00000025503)	BUB3 (ENSBGRG00000025518) #7	GPR26 (ENSBGRG00000025595) #9	CPXM2 (ENSBGRG00000025616) #10	CHST15 (ENSBGRG00000025644) #12	OAT (ENSBGRG00000025665) #13	ENSBGRG00000025674	NKX1-2 (ENSBGRG00000006952) #14	LHPP (ENSBGRG00000007063) #15	FAM53B (ENSBGRG00000007368) #16	EEF1AKMT2 (ENSBGRG00000007473) #17	ABRAXAS2 (ENSBGRG00000007533) #18	ZRANB1 (ENSBGRG00000007598) #19	CTBP2 (ENSBGRG00000007663) #20	TEX36 (ENSBGRG00000008012) #21	EDRF1 (ENSBGRG00000008073) #22	UROS (ENSBGRG00000008669) #24	BCCIP (ENSBGRG00000008827) #25	DHX32 (ENSBGRG00000008932) #26	FANK1 (ENSBGRG00000009041) #27	ADAM12 (ENSBGRG00000009261) #28	ENSBGRG00000009507 #29	ENSBGRG00000009554	DOCK1 (ENSBGRG00000009636) #31	INSYN2A (ENSBGRG00000010474) #30	NPS (ENSBGRG00000010509) #32	FOXI2 (ENSBGRG00000010559) #33	CLRN3 (ENSBGRG00000010595) #34	PTPRE (ENSBGRG00000010693) #35	ENSBGRG00000011844 #36	EBF3 (ENSBGRG00000012066) #37
Wild yak	MODERN SPECIES	1474							CHST15 (ENSBMUG00000011289) #12	OAT (ENSBMUG00000011306) #13	LHPP (ENSBMUG00000011324) #15	FAM53B (ENSBMUG00000011352) #16	EEF1AKMT2 (ENSBMUG00000011370) #17	ABRAXAS2 (ENSBMUG00000011385) #18	ZRANB1 (ENSBMUG00000011392) #19	CTBP2 (ENSBMUG00000011437) #20	TEX36 (ENSBMUG00000011471) #21	EDRF1 (ENSBMUG00000011517) #22	UROS (ENSBMUG00000011555) #24	BCCIP (ENSBMUG00000011573) #25	DHX32 (ENSBMUG00000011587) #26	ENSBMUG00000011608	FANK1 (ENSBMUG00000011628) #27	ADAM12 (ENSBMUG00000011732) #28
Bos_b	ANCESTRAL SPECIES	23	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37
Hybrid Bos Indicus	MODERN SPECIES	18	HMX3 (ENSBIXG00005022277)	HMX2 (ENSBIXG00005003794)	BUB3 (ENSBIXG00005022455) #7	GPR26 (ENSBIXG00005022493) #9	CPXM2 (ENSBIXG00005007228) #10	CHST15 (ENSBIXG00005022629) #12	OAT (ENSBIXG00005022673) #13	NKX1-2 (ENSBIXG00005022692) #14	LHPP (ENSBIXG00005022732) #15	FAM53B (ENSBIXG00005022783) #16	EEF1AKMT2 (ENSBIXG00005022799) #17	ABRAXAS2 (ENSBIXG00005022811) #18	ENSBIXG00005022855 #19	CTBP2 (ENSBIXG00005022970) #20	TEX36 (ENSBIXG00005023048) #21	EDRF1 (ENSBIXG00005023100) #22	UROS (ENSBIXG00005003948) #24	BCCIP (ENSBIXG00005023242) #25	DHX32 (ENSBIXG00005023271) #26	FANK1 (ENSBIXG00005023337) #27	ADAM12 (ENSBIXG00005023445) #28	C10orf90 (ENSBIXG00005023511) #29	INSYN2A (ENSBIXG00005023556) #30	DOCK1 (ENSBIXG00005006170) #31	NPS (ENSBIXG00005004046) #32	FOXI2 (ENSBIXG00005023664) #33	CLRN3 (ENSBIXG00005004054) #34	PTPRE (ENSBIXG00005023896) #35	ENSBIXG00005023966	ENSBIXG00005024025	ENSBIXG00005024056 #36
Cow	MODERN SPECIES	18	HMX3 (ENSBTAG00000001006)	HMX2 (ENSBTAG00000017911)	BUB3 (ENSBTAG00000017913) #7	GPR26 (ENSBTAG00000051105) #9	CPXM2 (ENSBTAG00000018941) #10	CHST15 (ENSBTAG00000003312) #12	OAT (ENSBTAG00000006928) #13	NKX1-2 (ENSBTAG00000020918) #14	LHPP (ENSBTAG00000010957) #15	FAM53B (ENSBTAG00000012970) #16	EEF1AKMT2 (ENSBTAG00000050151) #17	ABRAXAS2 (ENSBTAG00000023840) #18	ZRANB1 (ENSBTAG00000003395) #19	CTBP2 (ENSBTAG00000003397) #20	TEX36 (ENSBTAG00000007011) #21	EDRF1 (ENSBTAG00000009439) #22	UROS (ENSBTAG00000005791) #24	BCCIP (ENSBTAG00000005792) #25	DHX32 (ENSBTAG00000005795) #26	FANK1 (ENSBTAG00000022917) #27	ADAM12 (ENSBTAG00000012444) #28	C26H10orf90 (ENSBTAG00000011587) #29	DOCK1 (ENSBTAG00000031890) #31	INSYN2A (ENSBTAG00000021015) #30	NPS (ENSBTAG00000054311) #32	FOXI2 (ENSBTAG00000006218) #33	CLRN3 (ENSBTAG00000047054) #34	PTPRE (ENSBTAG00000002435) #35	MKI67 (ENSBTAG00000002444)	MGMT (ENSBTAG00000050386) #36	EBF3 (ENSBTAG00000008272) #37
American bison	MODERN SPECIES	3316	IKZF5 (ENSBBBG00000011060)	ACADSB (ENSBBBG00000011078)	HMX3 (ENSBBBG00000011087)	HMX2 (ENSBBBG00000001996)	BUB3 (ENSBBBG00000002000) #7	CPXM2 (ENSBBBG00000011180) #10	CHST15 (ENSBBBG00000011197) #12	OAT (ENSBBBG00000011212) #13	LHPP (ENSBBBG00000002042) #15	FAM53B (ENSBBBG00000011239) #16	EEF1AKMT2 (ENSBBBG00000011272) #17	ABRAXAS2 (ENSBBBG00000002054) #18	ZRANB1 (ENSBBBG00000011300) #19	ENSBBBG00000011321 #20	TEX36 (ENSBBBG00000006933) #21	EDRF1 (ENSBBBG00000011381) #22	UROS (ENSBBBG00000007119) #24	BCCIP (ENSBBBG00000011417) #25	DHX32 (ENSBBBG00000011428) #26	ENSBBBG00000011431	FANK1 (ENSBBBG00000011445) #27	ADAM12 (ENSBBBG00000011479) #28	C10orf90 (ENSBBBG00000011501) #29	INSYN2A (ENSBBBG00000002111) #30	DOCK1 (ENSBBBG00000002133) #31	NPS (ENSBBBG00000011609) #32	FOXI2 (ENSBBBG00000011620) #33	CLRN3 (ENSBBBG00000002139) #34	PTPRE (ENSBBBG00000008730) #35	ENSBBBG00000007445	ENSBBBG00000011695 #36
Caprinae	ANCESTRAL SPECIES	19	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399.i #17	ENSGT00530000063424.a.j #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00530000063787.B #30	ENSGT00940000154974 #31	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37
Rambouillet Sheep	MODERN SPECIES	14	HMX2 (ENSOARG00020022828)	BUB3 (ENSOARG00020022850) #7	ENSOARG00020022917	GPR26 (ENSOARG00020022931) #9	CPXM2 (ENSOARG00020022962) #10	CHST15 (ENSOARG00020023005) #12	OAT (ENSOARG00020023046) #13	NKX1-2 (ENSOARG00020023086) #14	LHPP (ENSOARG00020023115) #15	FAM53B (ENSOARG00020023134) #16	EEF1AKMT2 (ENSOARG00020023184) #17	ENSOARG00020023207 #18	ZRANB1 (ENSOARG00020023239) #19	CTBP2 (ENSOARG00020023317) #20	TEX36 (ENSOARG00020023414) #21	EDRF1 (ENSOARG00020023473) #22	UROS (ENSOARG00020023759) #24	ENSOARG00020023799 #25	DHX32 (ENSOARG00020023821) #26	FANK1 (ENSOARG00020023878) #27	ADAM12 (ENSOARG00020023949) #28	DOCK1 (ENSOARG00020024201) #31	ENSOARG00020024984 #18	NPS (ENSOARG00020025028) #32	FOXI2 (ENSOARG00020025039) #33	CLRN3 (ENSOARG00020025052) #34	PTPRE (ENSOARG00020025091) #35	ENSOARG00020025247	EBF3 (ENSOARG00020025277) #37	C10orf143 (ENSOARG00020025310)	GLRX3 (ENSOARG00020025315)
Goat	MODERN SPECIES	18	HMX3 (ENSCHIG00000010956)	HMX2 (ENSCHIG00000026470)	BUB3 (ENSCHIG00000021092) #7	GPR26 (ENSCHIG00000011580) #9	CPXM2 (ENSCHIG00000019349) #10	CHST15 (ENSCHIG00000024216) #12	ENSCHIG00000014280 #13	NKX1-2 (ENSCHIG00000009179) #14	LHPP (ENSCHIG00000016913) #15	ENSCHIG00000012818 #16	ENSCHIG00000004811 #17	ENSCHIG00000021679 #18	ZRANB1 (ENSCHIG00000023041) #19	ENSCHIG00000020240 #20	TEX36 (ENSCHIG00000011668) #21	EDRF1 (ENSCHIG00000011117) #22	UROS (ENSCHIG00000022204) #24	ENSCHIG00000016594 #25	DHX32 (ENSCHIG00000000489) #26	FANK1 (ENSCHIG00000015691) #27	ADAM12 (ENSCHIG00000011552) #28	C10orf90 (ENSCHIG00000018126) #29	INSYN2A (ENSCHIG00000010868) #30	DOCK1 (ENSCHIG00000019621) #31	NPS (ENSCHIG00000027111) #32	FOXI2 (ENSCHIG00000010172) #33	CLRN3 (ENSCHIG00000013085) #34	PTPRE (ENSCHIG00000019502) #35	ENSCHIG00000023816	MGMT (ENSCHIG00000015723) #36	EBF3 (ENSCHIG00000019232) #37
Siberian musk deer	MODERN SPECIES	1161	HMX2 (ENSMMSG00000013191)	BUB3 (ENSMMSG00000013050) #7	GPR26 (ENSMMSG00000012996) #9	CPXM2 (ENSMMSG00000012925) #10	CHST15 (ENSMMSG00000012879) #12	OAT (ENSMMSG00000012853) #13	NKX1-2 (ENSMMSG00000012827) #14	LHPP (ENSMMSG00000012785) #15	FAM53B (ENSMMSG00000012745) #16	ENSMMSG00000012701 #17	ABRAXAS2 (ENSMMSG00000012681) #18	ENSMMSG00000012649	ZRANB1 (ENSMMSG00000012620) #19	CTBP2 (ENSMMSG00000012540) #20	TEX36 (ENSMMSG00000012502) #21	EDRF1 (ENSMMSG00000012377) #22	UROS (ENSMMSG00000012288) #24	ENSMMSG00000012243 #25	DHX32 (ENSMMSG00000012210) #26	FANK1 (ENSMMSG00000012169) #27	ENSMMSG00000012153	ADAM12 (ENSMMSG00000012083) #28	C10orf90 (ENSMMSG00000012019) #29	INSYN2A (ENSMMSG00000011995) #30	DOCK1 (ENSMMSG00000011948) #31	NPS (ENSMMSG00000011905) #32	FOXI2 (ENSMMSG00000011887) #33	CLRN3 (ENSMMSG00000011863) #34	PTPRE (ENSMMSG00000011664) #35	ENSMMSG00000011615	MGMT (ENSMMSG00000011595) #36
Yarkand deer	MODERN SPECIES	6	HMX2 (ENSCHYG00000013483)	BUB3 (ENSCHYG00000013530) #7	GPR26 (ENSCHYG00000013748) #9	CPXM2 (ENSCHYG00000013812) #10	CHST15 (ENSCHYG00000014028) #12	OAT (ENSCHYG00000014322) #13	ENSCHYG00000014425 #14	LHPP (ENSCHYG00000014469) #15	FAM53B (ENSCHYG00000014703) #16	EEF1AKMT2 (ENSCHYG00000014822) #17	ENSCHYG00000014873	ABRAXAS2 (ENSCHYG00000014923) #18	ZRANB1 (ENSCHYG00000015039) #19	ENSCHYG00000015319 #20	TEX36 (ENSCHYG00000015522) #21	EDRF1 (ENSCHYG00000015642) #22	UROS (ENSCHYG00000016089) #24	BCCIP (ENSCHYG00000016427) #25	DHX32 (ENSCHYG00000016539) #26	FANK1 (ENSCHYG00000016654) #27	ADAM12 (ENSCHYG00000016986) #28	C10orf90 (ENSCHYG00000017370) #29	DOCK1 (ENSCHYG00000017579) #31	INSYN2A (ENSCHYG00000018674) #30	NPS (ENSCHYG00000018729) #32	FOXI2 (ENSCHYG00000018763) #33	CLRN3 (ENSCHYG00000018803) #34	PTPRE (ENSCHYG00000018913) #35	ENSCHYG00000019405	MGMT (ENSCHYG00000019691) #36	EBF3 (ENSCHYG00000019883) #37
Camelidae	ANCESTRAL SPECIES	86	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00530000063787.B #30	ENSGT00940000154974 #31	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT01030000234750
Alpaca	MODERN SPECIES	3473																EDRF1 (ENSVPAG00000003025) #22
Arabian camel	MODERN SPECIES	2	HMX3 (ENSCDRG00005007324)	HMX2 (ENSCDRG00005007291)	BUB3 (ENSCDRG00005007065) #7	GPR26 (ENSCDRG00005006985) #9	CPXM2 (ENSCDRG00005006920) #10	CHST15 (ENSCDRG00005006860) #12	OAT (ENSCDRG00005006770) #13	NKX1-2 (ENSCDRG00005006736) #14	LHPP (ENSCDRG00005006641) #15	FAM53B (ENSCDRG00005006593) #16	EEF1AKMT2 (ENSCDRG00005007107) #17	ABRAXAS2 (ENSCDRG00005007040) #18	ZRANB1 (ENSCDRG00005006967) #19	CTBP2 (ENSCDRG00005006779) #20	TEX36 (ENSCDRG00005006718) #21	EDRF1 (ENSCDRG00005006537) #22	UROS (ENSCDRG00005006451) #24	BCCIP (ENSCDRG00005006346) #25	DHX32 (ENSCDRG00005006268) #26	FANK1 (ENSCDRG00005006185) #27	ADAM12 (ENSCDRG00005004626) #28	C10orf90 (ENSCDRG00005004532) #29	INSYN2A (ENSCDRG00005004466) #30	DOCK1 (ENSCDRG00005004338) #31	NPS (ENSCDRG00005004297) #32	FOXI2 (ENSCDRG00005004278) #33	CLRN3 (ENSCDRG00005004265) #34	PTPRE (ENSCDRG00005004037) #35	MGMT (ENSCDRG00005003964) #36	EBF3 (ENSCDRG00005003771) #37	C10orf143 (ENSCDRG00005003714)
Laurasiatheria_b	ANCESTRAL SPECIES	15	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Carnivora	ANCESTRAL SPECIES	16	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Caniformia	ANCESTRAL SPECIES	13	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Caniformia_b	ANCESTRAL SPECIES	10	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Ursidae	ANCESTRAL SPECIES	5	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Ursus	ANCESTRAL SPECIES	7	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399.d #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00390000015799 #36	ENSGT00950000182859.A.b.f #37	ENSGT00550000075030
American black bear	MODERN SPECIES	1709															TEX36 (ENSUAMG00000001556) #21	EDRF1 (ENSUAMG00000001614) #22	MMP21 (ENSUAMG00000002596) #23	UROS (ENSUAMG00000002620) #24	BCCIP (ENSUAMG00000002630) #25	DHX32 (ENSUAMG00000002640) #26
Polar bear	MODERN SPECIES	92	ENSUMAG00000005180	PSTK (ENSUMAG00000005193)	IKZF5 (ENSUMAG00000005198)	ACADSB (ENSUMAG00000005207)	BUB3 (ENSUMAG00000005215) #7	CPXM2 (ENSUMAG00000005241) #10	CHST15 (ENSUMAG00000005326) #12	OAT (ENSUMAG00000005337) #13	LHPP (ENSUMAG00000005342) #15	FAM53B (ENSUMAG00000005371) #16	ENSUMAG00000005375 #17	ABRAXAS2 (ENSUMAG00000005388) #18	ZRANB1 (ENSUMAG00000005395) #19	ENSUMAG00000005406 #20	TEX36 (ENSUMAG00000005429) #21	EDRF1 (ENSUMAG00000005462) #22	UROS (ENSUMAG00000005692) #24	BCCIP (ENSUMAG00000005698) #25	DHX32 (ENSUMAG00000005702) #26	FANK1 (ENSUMAG00000005705) #27	ADAM12 (ENSUMAG00000005776) #28	C10orf90 (ENSUMAG00000006231) #29	DOCK1 (ENSUMAG00000006567) #31	INSYN2A (ENSUMAG00000009173) #30	NPS (ENSUMAG00000009175) #32	CLRN3 (ENSUMAG00000009182) #34	PTPRE (ENSUMAG00000009225) #35	MGMT (ENSUMAG00000009436) #36	EBF3 (ENSUMAG00000009444) #37	GLRX3 (ENSUMAG00000009512)	TCERG1L (ENSUMAG00000009552)
Giant Panda	MODERN SPECIES	16	BUB3 (ENSAMEG00000009521) #7	GPR26 (ENSAMEG00000009542) #9	CPXM2 (ENSAMEG00000009550) #10	CHST15 (ENSAMEG00000010183) #12	OAT (ENSAMEG00000010160) #13	LHPP (ENSAMEG00000010149) #15	FAM53B (ENSAMEG00000004200) #16	EEF1AKMT2 (ENSAMEG00000004197) #17	ABRAXAS2 (ENSAMEG00000004177) #18	ZRANB1 (ENSAMEG00000004155) #19	ENSAMEG00000004118 #20	ENSAMEG00000007609	ENSAMEG00000007551	CCN4 (ENSAMEG00000029921)	ENSAMEG00000007531 #21	ENSAMEG00000007492 #22	MMP21 (ENSAMEG00000007482) #23	UROS (ENSAMEG00000007447) #24	BCCIP (ENSAMEG00000007425) #25	ENSAMEG00000026388	DHX32 (ENSAMEG00000007401) #26	ENSAMEG00000024389 #27	ENSAMEG00000025962 #27	ADAM12 (ENSAMEG00000007320) #28	ENSAMEG00000007314 #29	ENSAMEG00000030009 #29	DOCK1 (ENSAMEG00000007297) #31	INSYN2A (ENSAMEG00000007293) #30	NPS (ENSAMEG00000025718) #32	FOXI2 (ENSAMEG00000023894) #33	CLRN3 (ENSAMEG00000000246) #34
Mustelinae	ANCESTRAL SPECIES	40	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Ferret	MODERN SPECIES	193	GPR26 (ENSMPUG00000002767) #9	CPXM2 (ENSMPUG00000002760) #10	CHST15 (ENSMPUG00000002754) #12	OAT (ENSMPUG00000002748) #13	NKX1-2 (ENSMPUG00000002742) #14	LHPP (ENSMPUG00000002737) #15	FAM53B (ENSMPUG00000002735) #16	EEF1AKMT2 (ENSMPUG00000002730) #17	ABRAXAS2 (ENSMPUG00000002713) #18	ZRANB1 (ENSMPUG00000002701) #19	ENSMPUG00000002691 #20	ENSMPUG00000002687	ENSMPUG00000002664	ENSMPUG00000002661	TEX36 (ENSMPUG00000002655) #21	EDRF1 (ENSMPUG00000002649) #22	MMP21 (ENSMPUG00000002630) #23	UROS (ENSMPUG00000002627) #24	BCCIP (ENSMPUG00000002624) #25	DHX32 (ENSMPUG00000002615) #26	FANK1 (ENSMPUG00000002564) #27	ADAM12 (ENSMPUG00000002554) #28	C10orf90 (ENSMPUG00000002530) #29	ENSMPUG00000002525	INSYN2A (ENSMPUG00000002522) #30	DOCK1 (ENSMPUG00000002512) #31	NPS (ENSMPUG00000002509) #32	FOXI2 (ENSMPUG00000002504) #33	ENSMPUG00000002500	CLRN3 (ENSMPUG00000002497) #34	PTPRE (ENSMPUG00000002492) #35
American mink	MODERN SPECIES	35	HMX2 (ENSNVIG00000007861)	BUB3 (ENSNVIG00000007873) #7	GPR26 (ENSNVIG00000007954) #9	CPXM2 (ENSNVIG00000007971) #10	CHSTF (ENSNVIG00000008037) #12	OAT (ENSNVIG00000008116) #13	NKX1-2 (ENSNVIG00000008189) #14	LHPP (ENSNVIG00000008217) #15	ENSNVIG00000008251	FAM53B (ENSNVIG00000008261) #16	EEF1AKMT2 (ENSNVIG00000008297) #17	ABRAXAS2 (ENSNVIG00000008316) #18	ZRANB1 (ENSNVIG00000008361) #19	CTBP2 (ENSNVIG00000008393) #20	TEX36 (ENSNVIG00000008467) #21	EDRF1 (ENSNVIG00000008487) #22	MMP21 (ENSNVIG00000008553) #23	UROS (ENSNVIG00000008590) #24	ENSNVIG00000008620 #25	DHX32 (ENSNVIG00000008638) #26	FANK1 (ENSNVIG00000008651) #27	ADAM12 (ENSNVIG00000008712) #28	C10orf90 (ENSNVIG00000008805) #29	DOCK1 (ENSNVIG00000008864) #31	INSYN2A (ENSNVIG00000008917) #30	NPS (ENSNVIG00000008930) #32	ENSNVIG00000008936	FOXI2 (ENSNVIG00000008944) #33	CLRN3 (ENSNVIG00000008954) #34	PTPRE (ENSNVIG00000008962) #35	MGMT (ENSNVIG00000009056) #36
Canidae	ANCESTRAL SPECIES	16	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Canis_lupus	ANCESTRAL SPECIES	20	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00390000015889.o.a.b	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Dog	MODERN SPECIES	20	HMX2 (ENSCAFG00845024515)	PSTK (ENSCAFG00845024586) #7	GPR26 (ENSCAFG00845024706) #9	CHST15 (ENSCAFG00845024829) #10	ENSCAFG00845025131 #13	ENSCAFG00845025203	NKX1-2 (ENSCAFG00845025233) #14	LHPP (ENSCAFG00845025309) #15	ENSCAFG00845025467	FAM53B (ENSCAFG00845025520) #16	EEF1AKMT2 (ENSCAFG00845025641) #17	ABRAXAS2 (ENSCAFG00845025738) #18	ZRANB1 (ENSCAFG00845025822) #19	CTBP2 (ENSCAFG00845025974) #20	TEX36 (ENSCAFG00845026329) #21	EDRF1 (ENSCAFG00845026396) #22	MMP21 (ENSCAFG00845026645) #23	UROS (ENSCAFG00845026709) #24	BCCIP (ENSCAFG00845026810) #25	DHX32 (ENSCAFG00845026856) #26	ENSCAFG00845026942 #27	ADAM12 (ENSCAFG00845027056) #28	C10orf90 (ENSCAFG00845027244) #29	DOCK1 (ENSCAFG00845027604) #31	INSYN2A (ENSCAFG00845027750) #30	NPS (ENSCAFG00845027796) #32	FOXI2 (ENSCAFG00845027825) #33	CLRN3 (ENSCAFG00845027851) #34	PTPRE (ENSCAFG00845027906) #35	ENSCAFG00845028130	MGMT (ENSCAFG00845028222) #36
Dingo	MODERN SPECIES	165	BUB3 (ENSCAFG00020015234) #7	GPR26 (ENSCAFG00020015240) #9	CPXM2 (ENSCAFG00020015264) #10	CHST15 (ENSCAFG00020015364) #12	OAT (ENSCAFG00020015369) #13	ENSCAFG00020015371	NKX1-2 (ENSCAFG00020015374) #14	LHPP (ENSCAFG00020015380) #15	ENSCAFG00020015383	FAM53B (ENSCAFG00020015385) #16	EEF1AKMT2 (ENSCAFG00020015392) #17	ABRAXAS2 (ENSCAFG00020015395) #18	ZRANB1 (ENSCAFG00020015397) #19	ENSCAFG00020015405 #20	TEX36 (ENSCAFG00020015411) #21	EDRF1 (ENSCAFG00020015424) #22	MMP21 (ENSCAFG00020015646) #23	UROS (ENSCAFG00020015647) #24	BCCIP (ENSCAFG00020015652) #25	DHX32 (ENSCAFG00020015661) #26	FANK1 (ENSCAFG00020015665) #27	ADAM12 (ENSCAFG00020015691) #28	ENSCAFG00020015741 #29	DOCK1 (ENSCAFG00020015843) #31	INSYN2A (ENSCAFG00020019523) #30	NPS (ENSCAFG00020019529) #32	FOXI2 (ENSCAFG00020019530) #33	CLRN3 (ENSCAFG00020019536) #34	PTPRE (ENSCAFG00020019540) #35	ENSCAFG00020019563	MGMT (ENSCAFG00020019566) #36
Red fox	MODERN SPECIES	82	HMX2 (ENSVVUG00000006525)	BUB3 (ENSVVUG00000006513) #7	GPR26 (ENSVVUG00000006494) #9	CPXM2 (ENSVVUG00000006126) #10	CHST15 (ENSVVUG00000006046) #12	ENSVVUG00000006028	OAT (ENSVVUG00000006021) #13	ENSVVUG00000006014	LHPP (ENSVVUG00000006010) #15	FAM53B (ENSVVUG00000006005) #16	EEF1AKMT2 (ENSVVUG00000005997) #17	ABRAXAS2 (ENSVVUG00000005991) #18	ZRANB1 (ENSVVUG00000005988) #19	CTBP2 (ENSVVUG00000005975) #20	TEX36 (ENSVVUG00000005956) #21	EDRF1 (ENSVVUG00000005942) #22	ENSVVUG00000005832 #23	UROS (ENSVVUG00000005801) #24	BCCIP (ENSVVUG00000005796) #25	DHX32 (ENSVVUG00000005783) #26	FANK1 (ENSVVUG00000005751) #27	ADAM12 (ENSVVUG00000005741) #28	C10orf90 (ENSVVUG00000005698) #29	DOCK1 (ENSVVUG00000005643) #31	NPS (ENSVVUG00000005633) #32	FOXI2 (ENSVVUG00000005629) #33	CLRN3 (ENSVVUG00000005625) #34	PTPRE (ENSVVUG00000005552) #35	ENSVVUG00000005509	MGMT (ENSVVUG00000005481) #36	EBF3 (ENSVVUG00000002545) #37
Felidae	ANCESTRAL SPECIES	14	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00990000214258	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B
Panthera	ANCESTRAL SPECIES	8	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696.m #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00530000063787.B #30	ENSGT00940000154974 #31	ENSGT00400000024769 #32	ENSGT00990000214258	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B
Panthera_a	ANCESTRAL SPECIES	9	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696.m #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00530000063787.B #30	ENSGT00940000154974 #31	ENSGT00400000024769 #32	ENSGT00990000214258	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B
leopard	MODERN SPECIES	99	HMX3 (ENSPPRG00000014702)	HMX2 (ENSPPRG00000014728)	BUB3 (ENSPPRG00000014829) #7	GPR26 (ENSPPRG00000014881) #9	CPXM2 (ENSPPRG00000014912) #10	CHST15 (ENSPPRG00000015072) #12	OAT (ENSPPRG00000016061) #13	NKX1-2 (ENSPPRG00000016141) #14	LHPP (ENSPPRG00000016378) #15	FAM53B (ENSPPRG00000016742) #16	EEF1AKMT2 (ENSPPRG00000017084) #17	ABRAXAS2 (ENSPPRG00000017184) #18	ZRANB1 (ENSPPRG00000017274) #19	CTBP2 (ENSPPRG00000017423) #20	TEX36 (ENSPPRG00000017465) #21	EDRF1 (ENSPPRG00000018983) #22	MMP21 (ENSPPRG00000019186) #23	UROS (ENSPPRG00000019516) #24	BCCIP (ENSPPRG00000019653) #25	DHX32 (ENSPPRG00000019772) #26	FANK1 (ENSPPRG00000020283) #27	ADAM12 (ENSPPRG00000021750) #28	ENSPPRG00000021967 #29	ENSPPRG00000022049 #29	INSYN2A (ENSPPRG00000022432) #30	DOCK1 (ENSPPRG00000001334) #31	NPS (ENSPPRG00000001364) #32	FOXI2 (ENSPPRG00000001369) #33	CLRN3 (ENSPPRG00000001404) #34	PTPRE (ENSPPRG00000001519) #35	MGMT (ENSPPRG00000001583) #36
lion	MODERN SPECIES	11	HMX3 (ENSPLOG00000016360)	HMX2 (ENSPLOG00000016327)	BUB3 (ENSPLOG00000016227) #7	GPR26 (ENSPLOG00000016174) #9	CPXM2 (ENSPLOG00000016053) #10	CHST15 (ENSPLOG00000016014) #12	OAT (ENSPLOG00000015937) #13	NKX1-2 (ENSPLOG00000015903) #14	LHPP (ENSPLOG00000015773) #15	FAM53B (ENSPLOG00000015728) #16	EEF1AKMT2 (ENSPLOG00000015654) #17	ABRAXAS2 (ENSPLOG00000015611) #18	ZRANB1 (ENSPLOG00000015546) #19	CTBP2 (ENSPLOG00000015403) #20	TEX36 (ENSPLOG00000015239) #21	EDRF1 (ENSPLOG00000015097) #22	MMP21 (ENSPLOG00000014993) #23	UROS (ENSPLOG00000014815) #24	BCCIP (ENSPLOG00000014708) #25	DHX32 (ENSPLOG00000014637) #26	FANK1 (ENSPLOG00000014351) #27	ADAM12 (ENSPLOG00000014123) #28	C10orf90 (ENSPLOG00000013967) #29	INSYN2A (ENSPLOG00000013885) #30	DOCK1 (ENSPLOG00000013132) #31	NPS (ENSPLOG00000013023) #32	ENSPLOG00000012975	FOXI2 (ENSPLOG00000012910) #33	CLRN3 (ENSPLOG00000012875) #34	PTPRE (ENSPLOG00000012703) #35	ENSPLOG00000012624
Tiger	MODERN SPECIES	132							CHST15 (ENSPTIG00000015561) #12	OAT (ENSPTIG00000015942) #13	LHPP (ENSPTIG00000016392) #15	FAM53B (ENSPTIG00000016832) #16	EEF1AKMT2 (ENSPTIG00000017308) #17	ABRAXAS2 (ENSPTIG00000018285) #18	ZRANB1 (ENSPTIG00000018595) #19	ENSPTIG00000019618 #20	TEX36 (ENSPTIG00000020315) #21	EDRF1 (ENSPTIG00000020488) #22	MMP21 (ENSPTIG00000007488) #23	ENSPTIG00000009493 #24	ENSPTIG00000009943 #25	DHX32 (ENSPTIG00000010553) #26	FANK1 (ENSPTIG00000011870) #27	ADAM12 (ENSPTIG00000012955) #28	ENSPTIG00000016245 #29	ENSPTIG00000016357 #29	DOCK1 (ENSPTIG00000017191) #31	INSYN2A (ENSPTIG00000020478) #30	NPS (ENSPTIG00000020614) #32	CLRN3 (ENSPTIG00000020809) #34	PTPRE (ENSPTIG00000021211) #35	ENSPTIG00000005065 #36	ENSPTIG00000006024
Cat	MODERN SPECIES	242	ENSFCAG00000048422	HMX3 (ENSFCAG00000041528)	HMX2 (ENSFCAG00000042782)	BUB3 (ENSFCAG00000024986) #7	ENSFCAG00000045983 #9	CPXM2 (ENSFCAG00000013258) #10	CHST15 (ENSFCAG00000010458) #12	OAT (ENSFCAG00000013847) #13	NKX1-2 (ENSFCAG00000042371) #14	LHPP (ENSFCAG00000001827) #15	FAM53B (ENSFCAG00000015458) #16	ABRAXAS2 (ENSFCAG00000022333) #18	ZRANB1 (ENSFCAG00000002438) #19	CTBP2 (ENSFCAG00000002441) #20	TEX36 (ENSFCAG00000012986) #21	EDRF1 (ENSFCAG00000009548) #22	MMP21 (ENSFCAG00000012987) #23	UROS (ENSFCAG00000009550) #24	BCCIP (ENSFCAG00000024151) #25	DHX32 (ENSFCAG00000009555) #26	FANK1 (ENSFCAG00000024207) #27	ADAM12 (ENSFCAG00000000813) #28	C10orf90 (ENSFCAG00000040514) #29	DOCK1 (ENSFCAG00000008372) #31	INSYN2A (ENSFCAG00000007355) #30	NPS (ENSFCAG00000032950) #32	ENSFCAG00000051430	FOXI2 (ENSFCAG00000042347) #33	CLRN3 (ENSFCAG00000037549) #34	PTPRE (ENSFCAG00000009676) #35	ENSFCAG00000050995
Laurasiatheria_c	ANCESTRAL SPECIES	15	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00530000063787.B #30	ENSGT00940000154974 #31	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Chiroptera	ANCESTRAL SPECIES	6	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00940000154430.g.b #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00530000063787.B #30	ENSGT00940000154974 #31	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Microchiroptera	ANCESTRAL SPECIES	5	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.g.b #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00530000063787.B #30	ENSGT00940000154974 #31	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Greater horseshoe bat	MODERN SPECIES	7	HMX2 (ENSRFEG00010009282)	BUB3 (ENSRFEG00010009105) #7	GPR26 (ENSRFEG00010009057) #9	CPXM2 (ENSRFEG00010009013) #10	CHST15 (ENSRFEG00010008970) #12	ENSRFEG00010008862 #13	NKX1-2 (ENSRFEG00010008843) #14	LHPP (ENSRFEG00010008786) #15	FAM53B (ENSRFEG00010008714) #16	EEF1AKMT2 (ENSRFEG00010008621) #17	ENSRFEG00010008598 #18	ZRANB1 (ENSRFEG00010008551) #19	ENSRFEG00010008512 #20	ENSRFEG00010008497	TEX36 (ENSRFEG00010008422) #21	EDRF1 (ENSRFEG00010008318) #22	MMP21 (ENSRFEG00010008092) #23	UROS (ENSRFEG00010008009) #24	BCCIP (ENSRFEG00010007976) #25	DHX32 (ENSRFEG00010007894) #26	FANK1 (ENSRFEG00010007706) #27	ADAM12 (ENSRFEG00010007460) #28	C10orf90 (ENSRFEG00010007318) #29	INSYN2A (ENSRFEG00010007237) #30	DOCK1 (ENSRFEG00010007054) #31	NPS (ENSRFEG00010006976) #32	FOXI2 (ENSRFEG00010006944) #33	CLRN3 (ENSRFEG00010006914) #34	PTPRE (ENSRFEG00010006840) #35	ENSRFEG00010006777	ENSRFEG00010006747
Microbat	MODERN SPECIES	1459											EEF1AKMT2 (ENSMLUG00000026925) #17	ABRAXAS2 (ENSMLUG00000017111) #18	ZRANB1 (ENSMLUG00000000711) #19	ENSMLUG00000000712 #20	TEX36 (ENSMLUG00000017054) #21	EDRF1 (ENSMLUG00000014397) #22	MMP21 (ENSMLUG00000014417) #23	ENSMLUG00000030100 #24	ENSMLUG00000001026 #25
Megabat	MODERN SPECIES	2423															TEX36 (ENSPVAG00000009127) #21	EDRF1 (ENSPVAG00000009128) #22	MMP21 (ENSPVAG00000009129) #23	UROS (ENSPVAG00000009131) #24	BCCIP (ENSPVAG00000009133) #25	DHX32 (ENSPVAG00000009135) #26
Equus	ANCESTRAL SPECIES	9	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430.h #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00530000063787.B #30	ENSGT00940000154974 #31	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Donkey	MODERN SPECIES	11	HMX3 (ENSEASG00005013491)	HMX2 (ENSEASG00005033822)	BUB3 (ENSEASG00005013498) #7	GPR26 (ENSEASG00005013501) #9	CPXM2 (ENSEASG00005013580) #10	CHST15 (ENSEASG00005013977) #12	OAT (ENSEASG00005013980) #13	NKX1-2 (ENSEASG00005013984) #14	LHPP (ENSEASG00005013985) #15	FAM53B (ENSEASG00005013989) #16	EEF1AKMT2 (ENSEASG00005013990) #17	ABRAXAS2 (ENSEASG00005034209) #18	ZRANB1 (ENSEASG00005013996) #19	CTBP2 (ENSEASG00005014001) #20	TEX36 (ENSEASG00005030922) #21	EDRF1 (ENSEASG00005014012) #22	MMP21 (ENSEASG00005014020) #23	UROS (ENSEASG00005014025) #24	BCCIP (ENSEASG00005014028) #25	DHX32 (ENSEASG00005014032) #26	FANK1 (ENSEASG00005014037) #27	ADAM12 (ENSEASG00005014093) #28	C10orf90 (ENSEASG00005014276) #29	INSYN2A (ENSEASG00005014880) #30	DOCK1 (ENSEASG00005014300) #31	NPS (ENSEASG00005014882) #32	FOXI2 (ENSEASG00005014885) #33	CLRN3 (ENSEASG00005014889) #34	PTPRE (ENSEASG00005014898) #35	ENSEASG00005036754	ENSEASG00005014920 #36
Horse	MODERN SPECIES		HMX3 (ENSECAG00000037274)	HMX2 (ENSECAG00000012690)	BUB3 (ENSECAG00000010047) #7	GPR26 (ENSECAG00000008245) #9	CPXM2 (ENSECAG00000024631) #10	CHST15 (ENSECAG00000022078) #12	OAT (ENSECAG00000014873) #13	NKX1-2 (ENSECAG00000039629) #14	LHPP (ENSECAG00000037483) #15	FAM53B (ENSECAG00000035894) #16	ENSECAG00000007838 #17	ABRAXAS2 (ENSECAG00000023340) #18	ZRANB1 (ENSECAG00000017587) #19	CTBP2 (ENSECAG00000022504) #20	TEX36 (ENSECAG00000020373) #21	EDRF1 (ENSECAG00000000346) #22	MMP21 (ENSECAG00000000156) #23	UROS (ENSECAG00000017285) #24	BCCIP (ENSECAG00000012266) #25	DHX32 (ENSECAG00000014298) #26	FANK1 (ENSECAG00000006524) #27	ADAM12 (ENSECAG00000012744) #28	C1H10orf90 (ENSECAG00000010056) #29	INSYN2A (ENSECAG00000005053) #30	DOCK1 (ENSECAG00000023813) #31	NPS (ENSECAG00000034244) #32	FOXI2 (ENSECAG00000029047) #33	CLRN3 (ENSECAG00000023786) #34	PTPRE (ENSECAG00000008876) #35	ENSECAG00000036105	MGMT (ENSECAG00000026858) #36
Atlantogenata	ANCESTRAL SPECIES	76	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00550000075030
Xenarthra	ANCESTRAL SPECIES	162				ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28
Sloth	MODERN SPECIES	852																EDRF1 (ENSCHOG00000009625) #22
Armadillo	MODERN SPECIES	295			ENSDNOG00000042732	GPR26 (ENSDNOG00000038460) #9	CPXM2 (ENSDNOG00000013028) #10	CHST15 (ENSDNOG00000043470) #12	ENSDNOG00000006180 #13	ENSDNOG00000038394 #14	LHPP (ENSDNOG00000040784) #15	ENSDNOG00000030957 #16	EEF1AKMT2 (ENSDNOG00000049387) #17	ABRAXAS2 (ENSDNOG00000032786) #18	ZRANB1 (ENSDNOG00000044807) #19	CTBP2 (ENSDNOG00000038675) #20	TEX36 (ENSDNOG00000004199) #21	EDRF1 (ENSDNOG00000006908) #22	MMP21 (ENSDNOG00000046951) #23	UROS (ENSDNOG00000035840) #24	BCCIP (ENSDNOG00000002939) #25	DHX32 (ENSDNOG00000002940) #26	FANK1 (ENSDNOG00000048371) #27	ADAM12 (ENSDNOG00000012992) #28
Afrotheria	ANCESTRAL SPECIES	88	ENSGT00940000156525	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00550000075030	ENSGT00940000160593
Tenrec	MODERN SPECIES	1063																ENSETEG00000000800 #22	ENSETEG00000000806	MMP21 (ENSETEG00000000808) #23
Afrotheria_a	ANCESTRAL SPECIES	92	ENSGT00940000156525	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.B	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00550000075030	ENSGT00940000160593
Elephant	MODERN SPECIES	537	HMX3 (ENSLAFG00000021892)	HMX2 (ENSLAFG00000012760)	BUB3 (ENSLAFG00000012753) #7	GPR26 (ENSLAFG00000008737) #9	CPXM2 (ENSLAFG00000011034) #10	CHST15 (ENSLAFG00000006570) #12	OAT (ENSLAFG00000006793) #13	ENSLAFG00000027784	LHPP (ENSLAFG00000013934) #15	FAM53B (ENSLAFG00000006874) #16	EEF1AKMT2 (ENSLAFG00000007509) #17	ABRAXAS2 (ENSLAFG00000007513) #18	ZRANB1 (ENSLAFG00000015221) #19	ENSLAFG00000015229 #20	TEX36 (ENSLAFG00000013261) #21	EDRF1 (ENSLAFG00000013265) #22	MMP21 (ENSLAFG00000013270) #23	UROS (ENSLAFG00000013271) #24	BCCIP (ENSLAFG00000032298) #25	DHX32 (ENSLAFG00000013280) #26	FANK1 (ENSLAFG00000011303) #27	ADAM12 (ENSLAFG00000011309) #28	ENSLAFG00000011321 #29	DOCK1 (ENSLAFG00000003237) #31	INSYN2A (ENSLAFG00000003245) #30	FOXI2 (ENSLAFG00000002801) #33	CLRN3 (ENSLAFG00000017600) #34	PTPRE (ENSLAFG00000008470) #35	ENSLAFG00000027411	MGMT (ENSLAFG00000022317) #36	EBF3 (ENSLAFG00000006912) #37
Hyrax	MODERN SPECIES	793																EDRF1 (ENSPCAG00000014774) #22	MMP21 (ENSPCAG00000014879) #23	UROS (ENSPCAG00000014968) #24
Marsupialia	ANCESTRAL SPECIES	38								ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00530000063787.B #30	ENSGT00940000154974 #31	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a.p #35	ENSGT00940000156570.a.o #35	ENSGT00940000154352.B
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00940000153710.b	ENSGT00940000154148.a.a	ENSGT00950000183126.b.b	ENSGT00940000162142	ENSGT00940000154696	ENSGT00950000182946.c.b	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT01020000233442	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00530000063787.B #30	ENSGT00940000154974 #31	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a.o #35	ENSGT00940000154352.B	ENSGT00390000015799 #36
Diprotodontia	ANCESTRAL SPECIES	87							ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT01020000233442	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00530000063787.B #30	ENSGT00940000154974 #31	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a.p #35
Diprotodontia_a	ANCESTRAL SPECIES	77	ENSGT00940000153710.b	ENSGT00940000154148.a.a	ENSGT00950000183126.b.b	ENSGT00940000162142	ENSGT00940000154696	ENSGT00950000182946.c.b	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT01020000233442	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00530000063787.B #30	ENSGT00940000154974 #31	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a.p #35
koala	MODERN SPECIES	244	ENSPCIG00000016460	CH25H (ENSPCIG00000023128)	ENSPCIG00000023123	LIPA (ENSPCIG00000023124)	OAT (ENSPCIG00000014184) #13	NKX1-2 (ENSPCIG00000023121) #14	LHPP (ENSPCIG00000023115) #15	FAM53B (ENSPCIG00000032462) #16	ENSPCIG00000023109 #7	EEF1AKMT2 (ENSPCIG00000023106) #17	ABRAXAS2 (ENSPCIG00000023103) #18	ENSPCIG00000023097	ZRANB1 (ENSPCIG00000023095) #19	ENSPCIG00000023084 #20	ENSPCIG00000023079	EDRF1 (ENSPCIG00000023062) #22	MMP21 (ENSPCIG00000022891) #23	UROS (ENSPCIG00000022887) #24	BCCIP (ENSPCIG00000022885) #25	DHX32 (ENSPCIG00000022881) #26	FANK1 (ENSPCIG00000022878) #27	ADAM12 (ENSPCIG00000022814) #28	ENSPCIG00000019059 #29	INSYN2A (ENSPCIG00000011681) #30	DOCK1 (ENSPCIG00000011695) #31	NPS (ENSPCIG00000011208) #32
Common wonbat	MODERN SPECIES	712	ANKRD22 (ENSVURG00010024431)	STAMBPL1 (ENSVURG00010024429)	ACTA2 (ENSVURG00010024427)	ENSVURG00010024425	CH25H (ENSVURG00010024423)	LIPA (ENSVURG00010024421)	ENSVURG00010024417	OAT (ENSVURG00010024415) #13	LHPP (ENSVURG00010024409) #15	FAM53B (ENSVURG00010024406) #16	ENSVURG00010024401 #17	ABRAXAS2 (ENSVURG00010024397) #18	ZRANB1 (ENSVURG00010024391) #19	ENSVURG00010024386 #20	ENSVURG00010024381	EDRF1 (ENSVURG00010024375) #22	MMP21 (ENSVURG00010024369) #23	UROS (ENSVURG00010024364) #24	BCCIP (ENSVURG00010024361) #25	DHX32 (ENSVURG00010024354) #26	FANK1 (ENSVURG00010024350) #27	ADAM12 (ENSVURG00010024308) #28	ENSVURG00010024297 #29	INSYN2A (ENSVURG00010024294) #30	DOCK1 (ENSVURG00010024282) #31	NPS (ENSVURG00010024279) #32	ENSVURG00010024277 #33	ENSVURG00010024274	CLRN3 (ENSVURG00010024273) #34	ENSVURG00010024268 #35
Wallaby	MODERN SPECIES	1713																EDRF1 (ENSMEUG00000010743) #22	MMP21 (ENSMEUG00000010789) #23
Tasmanian devil	MODERN SPECIES	1	ANKRD22 (ENSSHAG00000029983)	STAMBPL1 (ENSSHAG00000002001)	ACTA2 (ENSSHAG00000000685)	ENSSHAG00000027300	CH25H (ENSSHAG00000002866)	ENSSHAG00000021168	ENSSHAG00000004628 #13	ENSSHAG00000024220 #14	LHPP (ENSSHAG00000005733) #15	FAM53B (ENSSHAG00000023228) #16	EEF1AKMT2 (ENSSHAG00000030367) #17	ABRAXAS2 (ENSSHAG00000001728) #18	ZRANB1 (ENSSHAG00000005534) #19	CTBP2 (ENSSHAG00000029146) #20	ENSSHAG00000027978	EDRF1 (ENSSHAG00000010162) #22	MMP21 (ENSSHAG00000010384) #23	UROS (ENSSHAG00000010468) #24	BCCIP (ENSSHAG00000010600) #25	DHX32 (ENSSHAG00000010635) #26	FANK1 (ENSSHAG00000011252) #27	ADAM12 (ENSSHAG00000011484) #28	ENSSHAG00000013645 #29	ENSSHAG00000029926	DOCK1 (ENSSHAG00000015107) #31	INSYN2A (ENSSHAG00000026318) #30	ENSSHAG00000025114 #32	ENSSHAG00000006952 #33	CLRN3 (ENSSHAG00000028413) #34	ENSSHAG00000023519 #35	ENSSHAG00000000360 #35
Opossum	MODERN SPECIES		IMP3 (ENSMODG00000025193)	SNX33 (ENSMODG00000008837)	CSPG4 (ENSMODG00000008830)	ODF3L1 (ENSMODG00000008815)	SGPL1 (ENSMODG00000008784)	PCBD1 (ENSMODG00000008769)	ENSMODG00000013009	UNC5B (ENSMODG00000008754)	SLC29A3 (ENSMODG00000008718)	ENSMODG00000046225	ENSMODG00000010203 #16	EEF1AKMT2 (ENSMODG00000010207) #17	ABRAXAS2 (ENSMODG00000044079) #18	ZRANB1 (ENSMODG00000010224) #19	ENSMODG00000010255 #20	EDRF1 (ENSMODG00000010414) #22	MMP21 (ENSMODG00000010419) #23	UROS (ENSMODG00000010434) #24	BCCIP (ENSMODG00000010449) #25	DHX32 (ENSMODG00000010478) #26	FANK1 (ENSMODG00000010518) #27	ADAM12 (ENSMODG00000010538) #28	ENSMODG00000010557 #29	ENSMODG00000010562 #31	CCAR1 (ENSMODG00000017358)	ENSMODG00000017310	SLC25A16 (ENSMODG00000017305)	DNA2 (ENSMODG00000017302)	RUFY2 (ENSMODG00000017293)	HNRNPH3 (ENSMODG00000017283)	ENSMODG00000025155
Platypus	MODERN SPECIES	14						CHST15 (ENSOANG00000032177) #12	OAT (ENSOANG00000036094) #13	ENSOANG00000043404 #14	LHPP (ENSOANG00000031321) #15	ENSOANG00000048111 #16	ENSOANG00000039965 #17	ABRAXAS2 (ENSOANG00000042653) #18	ZRANB1 (ENSOANG00000048778) #19	ENSOANG00000000612 #20	ENSOANG00000047953	EDRF1 (ENSOANG00000014188) #22	MMP21 (ENSOANG00000005237) #23	UROS (ENSOANG00000042305) #24	BCCIP (ENSOANG00000002143) #25	DHX32 (ENSOANG00000041449) #26	ENSOANG00000041965 #27	ENSOANG00000013089 #28	ENSOANG00000051023 #29	ENSOANG00000046973 #30	DOCK1 (ENSOANG00000039339) #31	ENSOANG00000040902 #32	CLRN3 (ENSOANG00000042939) #34	PTPRE (ENSOANG00000046456) #35	ENSOANG00000031651	ENSOANG00000028957 #36	EBF3 (ENSOANG00000037915) #37
Sauria	ANCESTRAL SPECIES	8	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00550000075030
Archelosauria	ANCESTRAL SPECIES	10	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00550000075030
Archosauria	ANCESTRAL SPECIES	7	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00550000075030
Aves	ANCESTRAL SPECIES	6	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00550000075030	ENSGT00940000160593
Neognathae	ANCESTRAL SPECIES	7	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00550000075030	ENSGT00940000160593
Galloanserae	ANCESTRAL SPECIES	6	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00550000075030	ENSGT00940000160593
Phasianidae	ANCESTRAL SPECIES	6	ENSGT00940000156525	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a
Japanese quail	MODERN SPECIES	24	HMX3 (ENSCJPG00005020174)	HMX2 (ENSCJPG00005020175)	BUB3 (ENSCJPG00005020176) #7	GPR26 (ENSCJPG00005020183) #9	CPXM2 (ENSCJPG00005020184) #10	CHST15 (ENSCJPG00005000893) #12	OAT (ENSCJPG00005000924) #13	ENSCJPG00005000989	LHPP (ENSCJPG00005001010) #15	FAM53B (ENSCJPG00005001041) #16	ENSCJPG00005001056 #17	ABRAXAS2 (ENSCJPG00005001064) #18	ZRANB1 (ENSCJPG00005001074) #19	CTBP2 (ENSCJPG00005001082) #20	TEX36 (ENSCJPG00005001093) #21	EDRF1 (ENSCJPG00005001118) #22	UROS (ENSCJPG00005001169) #24	BCCIP (ENSCJPG00005001184) #25	DHX32 (ENSCJPG00005001188) #26	ADAM12 (ENSCJPG00005001198) #28	C10orf90 (ENSCJPG00005001219) #29	DOCK1 (ENSCJPG00005001240) #31	INSYN2A (ENSCJPG00005001268) #30	NPS (ENSCJPG00005001270) #32	CLRN3 (ENSCJPG00005001282) #34	PTPRE (ENSCJPG00005001286) #35	ENSCJPG00005001294	MGMT (ENSCJPG00005001320) #36	EBF3 (ENSCJPG00005001333) #37	GLRX3 (ENSCJPG00005001349)	TCERG1L (ENSCJPG00005001381)
Phasianidae_b	ANCESTRAL SPECIES	6	ENSGT00940000156525	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a
Turkey	DUPLICATION
Turkey	MODERN SPECIES	28	ENSMGAG00000011015	ENSMGAG00000020245	DCLRE1A (ENSMGAG00000011032)	HABP2 (ENSMGAG00000010954)	ENSMGAG00000020624	ENSMGAG00000011786 #35	ENSMGAG00000011785 #34	ENSMGAG00000011784 #32	ENSMGAG00000011756 #31	ENSMGAG00000011753 #29	ENSMGAG00000011743 #28	DHX32 (ENSMGAG00000011735) #26	ENSMGAG00000011712 #22	UROS (ENSMGAG00000011725) #24	TEX36 (ENSMGAG00000017663) #21	ENSMGAG00000021006 #22	ZRANB1 (ENSMGAG00000011701) #19	ENSMGAG00000011703 #20	ABRAXAS2 (ENSMGAG00000011692) #18	ENSMGAG00000011686 #17	ENSMGAG00000011677 #15	ENSMGAG00000011675 #13	ENSMGAG00000011673 #12	ENSMGAG00000011662 #10	GPR26 (ENSMGAG00000011624) #9	ENSMGAG00000011617	ENSMGAG00000011619 #7	HMX3 (ENSMGAG00000011613)	ACADSB (ENSMGAG00000011603)	ENSMGAG00000017710	ENSMGAG00000011599
Turkey	MODERN SPECIES	28	ADRB1 (ENSMGAG00000011048)	ENSMGAG00000011053	NHLRC2 (ENSMGAG00000011040)	ENSMGAG00000011015	ENSMGAG00000020245	DCLRE1A (ENSMGAG00000011032)	HABP2 (ENSMGAG00000010954)	ENSMGAG00000020624	ENSMGAG00000011786 #35	ENSMGAG00000011785 #34	ENSMGAG00000011784 #32	ENSMGAG00000011756 #31	ENSMGAG00000011753 #29	ENSMGAG00000011743 #28	DHX32 (ENSMGAG00000011735) #26	ENSMGAG00000011712 #22	UROS (ENSMGAG00000011725) #24	TEX36 (ENSMGAG00000017663) #21	ENSMGAG00000021006 #22	ZRANB1 (ENSMGAG00000011701) #19	ENSMGAG00000011703 #20	ABRAXAS2 (ENSMGAG00000011692) #18	ENSMGAG00000011686 #17	ENSMGAG00000011677 #15	ENSMGAG00000011675 #13	ENSMGAG00000011673 #12	ENSMGAG00000011662 #10	GPR26 (ENSMGAG00000011624) #9	ENSMGAG00000011617	ENSMGAG00000011619 #7	HMX3 (ENSMGAG00000011613)
Chicken	MODERN SPECIES	35	HMX3 (ENSGALG00010001815)	HMX2 (ENSGALG00010001821)	BUB3 (ENSGALG00010001832) #7	GPR26 (ENSGALG00010001842) #9	CPXM2 (ENSGALG00010001852) #10	CHST15 (ENSGALG00010001856) #12	OAT (ENSGALG00010001877) #13	ENSGALG00010001884	LHPP (ENSGALG00010001898) #15	FAM53B (ENSGALG00010001910) #16	EEF1AKMT2 (ENSGALG00010001915) #17	FAM175B (ENSGALG00010001935) #18	ZRANB1 (ENSGALG00010002401) #19	CTBP2 (ENSGALG00010002419) #20	TEX36 (ENSGALG00010002426) #21	EDRF1 (ENSGALG00010002445) #22	UROS (ENSGALG00010002466) #24	BCCIP (ENSGALG00010002487) #25	DHX32 (ENSGALG00010002497) #26	ADAM12 (ENSGALG00010002570) #28	ENSGALG00010002582 #29	ENSGALG00010003206 #29	DOCK1 (ENSGALG00010002587) #31	INSYN2A (ENSGALG00010002603) #30	NPS (ENSGALG00010002611) #32	CLRN3 (ENSGALG00010002617) #34	PTPRE (ENSGALG00010002712) #35	ENSGALG00010002750	MGMT (ENSGALG00010001308) #36	EBF3 (ENSGALG00010001334) #37	GLRX3 (ENSGALG00010001353)
Anatidae	ANCESTRAL SPECIES	4	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00550000075030	ENSGT00940000160593
Pink-footed goose	MODERN SPECIES	74	HMX2 (ENSABRG00000006606)	BUB3 (ENSABRG00000006598) #7	GPR26 (ENSABRG00000006566) #9	CPXM2 (ENSABRG00000006558) #10	CHST15 (ENSABRG00000006544) #12	OAT (ENSABRG00000006520) #13	NKX1-2 (ENSABRG00000006517) #14	ENSABRG00000006514	LHPP (ENSABRG00000006505) #15	FAM53B (ENSABRG00000006493) #16	EEF1AKMT2 (ENSABRG00000006480) #17	ABRAXAS2 (ENSABRG00000006469) #18	ZRANB1 (ENSABRG00000006463) #19	CTBP2 (ENSABRG00000006461) #20	TEX36 (ENSABRG00000006456) #21	EDRF1 (ENSABRG00000006414) #22	UROS (ENSABRG00000006392) #24	BCCIP (ENSABRG00000006379) #25	DHX32 (ENSABRG00000006292) #26	ADAM12 (ENSABRG00000006234) #28	C10orf90 (ENSABRG00000006215) #29	INSYN2A (ENSABRG00000006160) #30	DOCK1 (ENSABRG00000006103) #31	NPS (ENSABRG00000006088) #32	CLRN3 (ENSABRG00000006071) #34	PTPRE (ENSABRG00000006050) #35	ENSABRG00000005981	MGMT (ENSABRG00000005930) #36	EBF3 (ENSABRG00000005880) #37	ENSABRG00000005867	GLRX3 (ENSABRG00000005859)
Duck	MODERN SPECIES	24	ACADSB (ENSAPLG00000015129)	HMX3 (ENSAPLG00000025450)	BUB3 (ENSAPLG00000014959) #7	GPR26 (ENSAPLG00000014879) #9	ENSAPLG00000029693 #10	ENSAPLG00000014617 #10	OAT (ENSAPLG00000015424) #13	NKX1-2 (ENSAPLG00000018196) #14	LHPP (ENSAPLG00000015176) #15	FAM53B (ENSAPLG00000015172) #16	EEF1AKMT2 (ENSAPLG00000015137) #17	ABRAXAS2 (ENSAPLG00000014971) #18	ZRANB1 (ENSAPLG00000014747) #19	CTBP2 (ENSAPLG00000014447) #20	TEX36 (ENSAPLG00000013143) #21	EDRF1 (ENSAPLG00000012708) #22	UROS (ENSAPLG00000012701) #24	BCCIP (ENSAPLG00000012566) #25	DHX32 (ENSAPLG00000012133) #26	ADAM12 (ENSAPLG00000011037) #28	C10orf90 (ENSAPLG00000010978) #29	DOCK1 (ENSAPLG00000010685) #31	INSYN2A (ENSAPLG00000017772) #30	NPS (ENSAPLG00000029354) #32	FOXI2 (ENSAPLG00000027337) #33	CLRN3 (ENSAPLG00000023018) #34	PTPRE (ENSAPLG00000009861) #35	MGMT (ENSAPLG00000030688) #36	ENSAPLG00000012647 #37	GLRX3 (ENSAPLG00000012790)	TCERG1L (ENSAPLG00000012399)
Neognathae_b	ANCESTRAL SPECIES	8	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00550000075030	ENSGT00940000160593
Passeriformes	ANCESTRAL SPECIES	10	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00950000182865.b.b.b.c.b	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00950000183683	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00940000170313	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a
Great tit	MODERN SPECIES	26	HMX3 (ENSPMJG00000005758)	HMX2 (ENSPMJG00000005760)	BUB3 (ENSPMJG00000005761) #7	GPR26 (ENSPMJG00000005767) #9	CPXM2 (ENSPMJG00000005769) #10	CHST15 (ENSPMJG00000005775) #12	ENSPMJG00000005788	OAT (ENSPMJG00000005814) #13	LHPP (ENSPMJG00000005818) #15	FAM53B (ENSPMJG00000005835) #16	EEF1AKMT2 (ENSPMJG00000005841) #17	ABRAXAS2 (ENSPMJG00000005844) #18	ZRANB1 (ENSPMJG00000005856) #19	CTBP2 (ENSPMJG00000005884) #20	ENSPMJG00000005905	EDRF1 (ENSPMJG00000005907) #22	UROS (ENSPMJG00000005911) #24	BCCIP (ENSPMJG00000005912) #25	DHX32 (ENSPMJG00000005913) #26	ADAM12 (ENSPMJG00000005918) #28	C10orf90 (ENSPMJG00000005922) #29	DOCK1 (ENSPMJG00000005930) #31	INSYN2A (ENSPMJG00000005937) #30	ENSPMJG00000005938	CLRN3 (ENSPMJG00000005939) #34	PTPRE (ENSPMJG00000005940) #35	MGMT (ENSPMJG00000005964) #36	EBF3 (ENSPMJG00000005976) #37	ENSPMJG00000005982	TCERG1L (ENSPMJG00000005986)	ENSPMJG00000005989
Passeriformes_d	ANCESTRAL SPECIES	7	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00950000182865.b.b.b.c.b	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00950000183683	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00940000170313	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a
Passeriformes_g	ANCESTRAL SPECIES	8	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00950000182865.b.b.b.c.b	ENSGT00630000089895 #13	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00950000183683	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00940000170313	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a
Passeroidea	ANCESTRAL SPECIES	7	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00950000182865.b.b.b.c.b	ENSGT00630000089895 #13	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00950000183683	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00940000170313	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a
Zebra finch	MODERN SPECIES	28	HMX2 (ENSTGUG00000011380)	BUB3 (ENSTGUG00000011382) #7	GPR26 (ENSTGUG00000019570) #9	CPXM2 (ENSTGUG00000011397) #10	CHST15 (ENSTGUG00000011423) #12	ENSTGUG00000011432	OAT (ENSTGUG00000011436) #13	ENSTGUG00000022969	LHPP (ENSTGUG00000011442) #15	FAM53B (ENSTGUG00000011449) #16	EEF1AKMT2 (ENSTGUG00000011451) #17	ABRAXAS2 (ENSTGUG00000011455) #18	ZRANB1 (ENSTGUG00000011458) #19	CTBP2 (ENSTGUG00000011466) #20	ENSTGUG00000016414	EDRF1 (ENSTGUG00000011472) #22	UROS (ENSTGUG00000011481) #24	BCCIP (ENSTGUG00000011485) #25	ENSTGUG00000011491 #26	ENSTGUG00000011493 #26	ADAM12 (ENSTGUG00000011498) #28	C10orf90 (ENSTGUG00000024288) #29	DOCK1 (ENSTGUG00000011514) #31	INSYN2A (ENSTGUG00000011540) #30	ENSTGUG00000011554	CLRN3 (ENSTGUG00000011555) #34	PTPRE (ENSTGUG00000011558) #35	ENSTGUG00000021193	MGMT (ENSTGUG00000023939) #36	EBF3 (ENSTGUG00000011600) #37	GLRX3 (ENSTGUG00000011623)
Common canary	MODERN SPECIES	7	PSTK (ENSSCAG00000013588)	IKZF5 (ENSSCAG00000013584)	ACADSB (ENSSCAG00000013578)	BUB3 (ENSSCAG00000013570) #7	GPR26 (ENSSCAG00000013565) #9	CPXM2 (ENSSCAG00000013552) #10	CHST15 (ENSSCAG00000013544) #12	ENSSCAG00000013531	OAT (ENSSCAG00000013523) #13	LHPP (ENSSCAG00000013513) #15	EEF1AKMT2 (ENSSCAG00000013502) #17	ABRAXAS2 (ENSSCAG00000013495) #18	ZRANB1 (ENSSCAG00000013492) #19	CTBP2 (ENSSCAG00000013485) #20	ENSSCAG00000013479	EDRF1 (ENSSCAG00000013392) #22	UROS (ENSSCAG00000013356) #24	BCCIP (ENSSCAG00000013344) #25	DHX32 (ENSSCAG00000013331) #26	ADAM12 (ENSSCAG00000013286) #28	INSYN2A (ENSSCAG00000013261) #30	DOCK1 (ENSSCAG00000011158) #31	C10orf90 (ENSSCAG00000010706) #29	ENSSCAG00000010691	ENSSCAG00000010686	CLRN3 (ENSSCAG00000010680) #34	PTPRE (ENSSCAG00000010632) #35	ENSSCAG00000010606	ENSSCAG00000010598	MGMT (ENSSCAG00000010591) #36	EBF3 (ENSSCAG00000010428) #37
Medium ground finch	MODERN SPECIES	72	ENSGFOG00000013826	PSTK (ENSGFOG00000013828)	IKZF5 (ENSGFOG00000013829)	ACADSB (ENSGFOG00000013830)	HMX2 (ENSGFOG00000013831)	BUB3 (ENSGFOG00000013834) #7	GPR26 (ENSGFOG00000013835) #9	CPXM2 (ENSGFOG00000013837) #10	CHST15 (ENSGFOG00000013840) #12	OAT (ENSGFOG00000013842) #13	LHPP (ENSGFOG00000013844) #15	EEF1AKMT2 (ENSGFOG00000013845) #17	ABRAXAS2 (ENSGFOG00000013846) #18	ZRANB1 (ENSGFOG00000006329) #19	CTBP2 (ENSGFOG00000006333) #20	EDRF1 (ENSGFOG00000006339) #22	UROS (ENSGFOG00000006355) #24	BCCIP (ENSGFOG00000006370) #25	DHX32 (ENSGFOG00000006380) #26	ADAM12 (ENSGFOG00000006402) #28	C10orf90 (ENSGFOG00000006514) #29	DOCK1 (ENSGFOG00000006527) #31	ENSGFOG00000006582	CLRN3 (ENSGFOG00000006590) #34	PTPRE (ENSGFOG00000006603) #35	ENSGFOG00000006615	MGMT (ENSGFOG00000006627) #36	EBF3 (ENSGFOG00000006630) #37
Flycatcher	MODERN SPECIES	25	BUB3 (ENSFALG00000004735) #7	ENSFALG00000028168	GPR26 (ENSFALG00000004740) #9	CPXM2 (ENSFALG00000004744) #10	CHST15 (ENSFALG00000004749) #12	ENSFALG00000004758	OAT (ENSFALG00000004768) #13	NKX1-2 (ENSFALG00000004783) #14	LHPP (ENSFALG00000004799) #15	FAM53B (ENSFALG00000004809) #16	EEF1AKMT2 (ENSFALG00000024735) #17	ABRAXAS2 (ENSFALG00000025047) #18	ZRANB1 (ENSFALG00000004837) #19	CTBP2 (ENSFALG00000004849) #20	ENSFALG00000024991	EDRF1 (ENSFALG00000001018) #22	UROS (ENSFALG00000001024) #24	BCCIP (ENSFALG00000001029) #25	DHX32 (ENSFALG00000001048) #26	ADAM12 (ENSFALG00000001070) #28	C10orf90 (ENSFALG00000001074) #29	DOCK1 (ENSFALG00000001117) #31	INSYN2A (ENSFALG00000001196) #30	ENSFALG00000023045	ENSFALG00000014812	CLRN3 (ENSFALG00000023614) #34	PTPRE (ENSFALG00000001201) #35	ENSFALG00000001204	ENSFALG00000023643	ENSFALG00000026486	MGMT (ENSFALG00000001209) #36
Neognathae_c	ANCESTRAL SPECIES	8	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00550000075030	ENSGT00940000160593
Golden eagle	MODERN SPECIES	2	HMX3 (ENSACCG00020006513)	HMX2 (ENSACCG00020006506)	BUB3 (ENSACCG00020006497) #7	GPR26 (ENSACCG00020006486) #9	CPXM2 (ENSACCG00020006462) #10	CHST15 (ENSACCG00020006444) #12	OAT (ENSACCG00020006431) #13	NKX1-2 (ENSACCG00020006421) #14	LHPP (ENSACCG00020006411) #15	FAM53B (ENSACCG00020006378) #16	EEF1AKMT2 (ENSACCG00020006356) #17	ABRAXAS2 (ENSACCG00020006346) #18	ZRANB1 (ENSACCG00020006333) #19	CTBP2 (ENSACCG00020006318) #20	TEX36 (ENSACCG00020006300) #21	EDRF1 (ENSACCG00020006265) #22	UROS (ENSACCG00020006244) #24	BCCIP (ENSACCG00020006208) #25	ENSACCG00020006168 #26	ENSACCG00020006158 #26	ADAM12 (ENSACCG00020006113) #28	C10orf90 (ENSACCG00020006070) #29	INSYN2A (ENSACCG00020006055) #30	DOCK1 (ENSACCG00020006016) #31	NPS (ENSACCG00020005979) #32	FOXI2 (ENSACCG00020005964) #33	CLRN3 (ENSACCG00020005951) #34	PTPRE (ENSACCG00020005933) #35	MGMT (ENSACCG00020005905) #36	EBF3 (ENSACCG00020005883) #37	GLRX3 (ENSACCG00020005849)
Kakapo	MODERN SPECIES	22	HMX3 (ENSSHBG00005004243)	HMX2 (ENSSHBG00005004253)	BUB3 (ENSSHBG00005004261) #7	GPR26 (ENSSHBG00005004264) #9	CPXM2 (ENSSHBG00005004275) #10	CHST15 (ENSSHBG00005004287) #12	OAT (ENSSHBG00005004295) #13	NKX1-2 (ENSSHBG00005004300) #14	LHPP (ENSSHBG00005004303) #15	FAM53B (ENSSHBG00005004307) #16	EEF1AKMT2 (ENSSHBG00005004312) #17	ABRAXAS2 (ENSSHBG00005004319) #18	ZRANB1 (ENSSHBG00005004326) #19	CTBP2 (ENSSHBG00005004333) #20	ENSSHBG00005004341	EDRF1 (ENSSHBG00005004438) #22	UROS (ENSSHBG00005004544) #24	BCCIP (ENSSHBG00005004551) #25	ENSSHBG00005004565 #26	ENSSHBG00005004575 #26	ADAM12 (ENSSHBG00005004698) #28	C10orf90 (ENSSHBG00005005082) #29	DOCK1 (ENSSHBG00005005385) #31	INSYN2A (ENSSHBG00005007484) #30	NPS (ENSSHBG00005007496) #32	FOXI2 (ENSSHBG00005007503) #33	CLRN3 (ENSSHBG00005007508) #34	ENSSHBG00005007521 #35	ENSSHBG00005007545 #35	ENSSHBG00005007566	MGMT (ENSSHBG00005007589) #36
African ostrich	MODERN SPECIES	463	PSTK (ENSSCUG00000007836)	IKZF5 (ENSSCUG00000007835)	ACADSB (ENSSCUG00000007834)	BUB3 (ENSSCUG00000007830) #7	GPR26 (ENSSCUG00000007827) #9	CPXM2 (ENSSCUG00000007823) #10	CHST15 (ENSSCUG00000007819) #12	OAT (ENSSCUG00000007810) #13	LHPP (ENSSCUG00000007807) #15	FAM53B (ENSSCUG00000007804) #16	EEF1AKMT2 (ENSSCUG00000007801) #17	ABRAXAS2 (ENSSCUG00000007799) #18	ZRANB1 (ENSSCUG00000007796) #19	ENSSCUG00000007795	ENSSCUG00000007793	ENSSCUG00000007792 #22	UROS (ENSSCUG00000007791) #24	BCCIP (ENSSCUG00000007788) #25	DHX32 (ENSSCUG00000007786) #26	ADAM12 (ENSSCUG00000007780) #28	C10orf90 (ENSSCUG00000007778) #29	DOCK1 (ENSSCUG00000007775) #31	NPS (ENSSCUG00000007770) #32	CLRN3 (ENSSCUG00000007769) #34	PTPRE (ENSSCUG00000007735) #35	ENSSCUG00000007692	MGMT (ENSSCUG00000007684) #36	ENSSCUG00000007680 #37	ENSSCUG00000007676 #37	GLRX3 (ENSSCUG00000007671)	TCERG1L (ENSSCUG00000007664)
Australian saltwater crocodile	MODERN SPECIES	68	HMX3 (ENSCPRG00005009925)	HMX2 (ENSCPRG00005009921)	BUB3 (ENSCPRG00005009920) #7	GPR26 (ENSCPRG00005009894) #9	CPXM2 (ENSCPRG00005009835) #10	ENSCPRG00005009822	CHST15 (ENSCPRG00005009813) #12	OAT (ENSCPRG00005009806) #13	LHPP (ENSCPRG00005009804) #15	FAM53B (ENSCPRG00005009799) #16	EEF1AKMT2 (ENSCPRG00005009789) #17	ABRAXAS2 (ENSCPRG00005009783) #18	ZRANB1 (ENSCPRG00005009776) #19	CTBP2 (ENSCPRG00005009769) #20	TEX36 (ENSCPRG00005009741) #21	EDRF1 (ENSCPRG00005009723) #22	UROS (ENSCPRG00005009716) #24	BCCIP (ENSCPRG00005009713) #25	DHX32 (ENSCPRG00005009704) #26	FANK1 (ENSCPRG00005009698) #27	ADAM12 (ENSCPRG00005009683) #28	C10orf90 (ENSCPRG00005009670) #29	INSYN2A (ENSCPRG00005009660) #30	DOCK1 (ENSCPRG00005009650) #31	NPS (ENSCPRG00005009610) #32	ENSCPRG00005009606	CLRN3 (ENSCPRG00005009600) #34	PTPRE (ENSCPRG00005009590) #35	ENSCPRG00005009575	MGMT (ENSCPRG00005009563) #36	EBF3 (ENSCPRG00005009556) #37
Cryptodira	ANCESTRAL SPECIES	6	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00550000075030	ENSGT00940000160593
Testudinoidea	ANCESTRAL SPECIES	2	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C.q #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a.k #35	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00550000075030	ENSGT00940000160593
Emydidae	ANCESTRAL SPECIES	6	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C.q #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a.k #35	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00550000075030	ENSGT00940000160593
Three-toed box turtle	MODERN SPECIES	39	HMX2 (ENSTMTG00000019363)	BUB3 (ENSTMTG00000019371) #7	GPR26 (ENSTMTG00000019385) #9	ENSTMTG00000019402 #10	ENSTMTG00000019417 #10	CHST15 (ENSTMTG00000019442) #12	OAT (ENSTMTG00000019462) #13	NKX1-2 (ENSTMTG00000019477) #14	LHPP (ENSTMTG00000019511) #15	FAM53B (ENSTMTG00000019517) #16	EEF1AKMT2 (ENSTMTG00000019525) #17	ABRAXAS2 (ENSTMTG00000019534) #18	ZRANB1 (ENSTMTG00000019546) #19	CTBP2 (ENSTMTG00000019568) #20	TEX36 (ENSTMTG00000019599) #21	EDRF1 (ENSTMTG00000019646) #22	UROS (ENSTMTG00000019712) #24	BCCIP (ENSTMTG00000019719) #25	FANK1 (ENSTMTG00000019738) #27	ADAM12 (ENSTMTG00000019826) #28	C10orf90 (ENSTMTG00000020251) #29	DOCK1 (ENSTMTG00000020264) #31	INSYN2A (ENSTMTG00000020307) #30	NPS (ENSTMTG00000020318) #32	ENSTMTG00000020323 #33	CLRN3 (ENSTMTG00000020325) #34	ENSTMTG00000020331 #35	ENSTMTG00000014237 #35	ENSTMTG00000014255	MGMT (ENSTMTG00000014270) #36	EBF3 (ENSTMTG00000014291) #37
painted turtle	MODERN SPECIES	15	HMX3 (ENSCPBG00000028093)	HMX2 (ENSCPBG00000028090)	BUB3 (ENSCPBG00000028089) #7	GPR26 (ENSCPBG00000028085) #9	CPXM2 (ENSCPBG00000028082) #10	CHST15 (ENSCPBG00000028078) #12	OAT (ENSCPBG00000028074) #13	NKX1-2 (ENSCPBG00000028073) #14	LHPP (ENSCPBG00000028072) #15	FAM53B (ENSCPBG00000028070) #16	EEF1AKMT2 (ENSCPBG00000028069) #17	ABRAXAS2 (ENSCPBG00000028067) #18	ZRANB1 (ENSCPBG00000028065) #19	CTBP2 (ENSCPBG00000028062) #20	ENSCPBG00000028058	EDRF1 (ENSCPBG00000028056) #22	UROS (ENSCPBG00000028054) #24	BCCIP (ENSCPBG00000028052) #25	FANK1 (ENSCPBG00000028050) #27	ADAM12 (ENSCPBG00000028042) #28	C10orf90 (ENSCPBG00000028031) #29	ENSCPBG00000028029	BBOX1 (ENSCPBG00000028028)	FIBIN (ENSCPBG00000028026)	SLC5A12 (ENSCPBG00000028025)	MUC15 (ENSCPBG00000028023)	ANO3 (ENSCPBG00000028019)	LUZP2 (ENSCPBG00000028015)	GAS2 (ENSCPBG00000028013)	FANCF (ENSCPBG00000028012)	SLC17A6 (ENSCPBG00000028011)
Testudinidae	ANCESTRAL SPECIES	9	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C.q #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a.l #35	ENSGT00940000154352.A	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00550000075030
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	1039															TEX36 (ENSCABG00000005981) #21	ENSCABG00000005983 #22
Abingdon island giant tortoise	MODERN SPECIES	1205																ENSCABG00000015278 #22	UROS (ENSCABG00000015360) #24	BCCIP (ENSCABG00000015369) #25	FANK1 (ENSCABG00000015371) #27
Goode s thornscrub tortoise	MODERN SPECIES	21	HMX3 (ENSGEVG00005011045)	HMX2 (ENSGEVG00005011080)	BUB3 (ENSGEVG00005011128) #7	GPR26 (ENSGEVG00005011147) #9	CPXM2 (ENSGEVG00005011196) #10	CHST15 (ENSGEVG00005011451) #12	OAT (ENSGEVG00005011512) #13	NKX1-2 (ENSGEVG00005011543) #14	LHPP (ENSGEVG00005011572) #15	FAM53B (ENSGEVG00005011589) #16	EEF1AKMT2 (ENSGEVG00005011617) #17	ABRAXAS2 (ENSGEVG00005011649) #18	ZRANB1 (ENSGEVG00005011667) #19	CTBP2 (ENSGEVG00005011743) #20	TEX36 (ENSGEVG00005011932) #21	EDRF1 (ENSGEVG00005012029) #22	UROS (ENSGEVG00005012099) #24	BCCIP (ENSGEVG00005012179) #25	FANK1 (ENSGEVG00005012339) #27	ADAM12 (ENSGEVG00005012611) #28	C10orf90 (ENSGEVG00005012981) #29	DOCK1 (ENSGEVG00005013649) #31	INSYN2A (ENSGEVG00005017297) #30	NPS (ENSGEVG00005017336) #32	ENSGEVG00005017357 #33	CLRN3 (ENSGEVG00005017382) #34	PTPRE (ENSGEVG00005017413) #35	ENSGEVG00005017481	MGMT (ENSGEVG00005017500) #36	EBF3 (ENSGEVG00005017519) #37	ENSGEVG00005017678
Chinese turtle	MODERN SPECIES	2099	ENSPSIG00000001208	HMX3 (ENSPSIG00000008269)	HMX2 (ENSPSIG00000008282)	BUB3 (ENSPSIG00000008291) #7	GPR26 (ENSPSIG00000008465) #9	CPXM2 (ENSPSIG00000008503) #10	CHST15 (ENSPSIG00000008647) #12	OAT (ENSPSIG00000008761) #13	LHPP (ENSPSIG00000009629) #15	FAM53B (ENSPSIG00000009711) #16	EEF1AKMT2 (ENSPSIG00000009720) #17	ABRAXAS2 (ENSPSIG00000010008) #18	ENSPSIG00000010014	CTBP2 (ENSPSIG00000010025) #20	ENSPSIG00000001220	EDRF1 (ENSPSIG00000010245) #22	UROS (ENSPSIG00000011315) #24	BCCIP (ENSPSIG00000011321) #25	ENSPSIG00000011522
Lepidosauria	ANCESTRAL SPECIES	8	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.A	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37
tuatara	DUPLICATION
tuatara	MODERN SPECIES	1301	ENSSPUG00000013098	ENSSPUG00000013091	ENSSPUG00000013087	ENSSPUG00000013078	ENSSPUG00000013072	ENSSPUG00000013067	ENSSPUG00000013057	CHST15 (ENSSPUG00000013047) #12	OAT (ENSSPUG00000013033) #13	LHPP (ENSSPUG00000013007) #15	FAM53B (ENSSPUG00000013002) #16	EEF1AKMT2 (ENSSPUG00000012992) #17	ABRAXAS2 (ENSSPUG00000012979) #18	ZRANB1 (ENSSPUG00000012970) #19	CTBP2 (ENSSPUG00000012966) #20	ENSSPUG00000012952 #22	ENSSPUG00000012940 #22	UROS (ENSSPUG00000012923) #24	BCCIP (ENSSPUG00000012906) #25	DHX32 (ENSSPUG00000012893) #26	FANK1 (ENSSPUG00000012819) #27	ADAM12 (ENSSPUG00000012753) #28	ENSSPUG00000012728 #29	ENSSPUG00000012654 #31	ENSSPUG00000012626 #31	ENSSPUG00000012605 #31	ENSSPUG00000012597 #31	ENSSPUG00000012591
tuatara	MODERN SPECIES	1301	ENSSPUG00000013091	ENSSPUG00000013087	ENSSPUG00000013078	ENSSPUG00000013072	ENSSPUG00000013067	ENSSPUG00000013057	CHST15 (ENSSPUG00000013047) #12	OAT (ENSSPUG00000013033) #13	LHPP (ENSSPUG00000013007) #15	FAM53B (ENSSPUG00000013002) #16	EEF1AKMT2 (ENSSPUG00000012992) #17	ABRAXAS2 (ENSSPUG00000012979) #18	ZRANB1 (ENSSPUG00000012970) #19	CTBP2 (ENSSPUG00000012966) #20	ENSSPUG00000012952 #22	ENSSPUG00000012940 #22	UROS (ENSSPUG00000012923) #24	BCCIP (ENSSPUG00000012906) #25	DHX32 (ENSSPUG00000012893) #26	FANK1 (ENSSPUG00000012819) #27	ADAM12 (ENSSPUG00000012753) #28	ENSSPUG00000012728 #29	ENSSPUG00000012654 #31	ENSSPUG00000012626 #31	ENSSPUG00000012605 #31	ENSSPUG00000012597 #31	ENSSPUG00000012591
Episquamata	ANCESTRAL SPECIES	2	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.A	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37
Toxicofera	ANCESTRAL SPECIES	2	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.A	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00550000075030	ENSGT00940000160593
Elapidae	ANCESTRAL SPECIES	4	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a.b #9	ENSGT00950000183001.a.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00530000063787.B #30	ENSGT00940000154974 #31	ENSGT00990000209592	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.A	ENSGT00390000015799 #36	ENSGT00950000182859.A.b.u #37	ENSGT00550000075030
Elapidae_a	ANCESTRAL SPECIES		ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00990000209592	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.A	ENSGT00390000015799 #36	ENSGT00950000182859.A.b.u #37	ENSGT00550000075030
Acanthophiinae	ANCESTRAL SPECIES	1	ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00990000209592	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00390000015799 #36	ENSGT00950000182859.A.b.u #37	ENSGT00550000075030	ENSGT00940000160593
Eastern brown snake	MODERN SPECIES	25	HMX2 (ENSPTXG00000011908)	BUB3 (ENSPTXG00000011909) #7	ENSPTXG00000011910	GPR26 (ENSPTXG00000011911) #9	CPXM2 (ENSPTXG00000011912) #10	CHST15 (ENSPTXG00000011913) #12	OAT (ENSPTXG00000011914) #13	NKX1-2 (ENSPTXG00000011915) #14	LHPP (ENSPTXG00000011916) #15	FAM53B (ENSPTXG00000011917) #16	EEF1AKMT2 (ENSPTXG00000011918) #17	ABRAXAS2 (ENSPTXG00000011919) #18	ZRANB1 (ENSPTXG00000011920) #19	CTBP2 (ENSPTXG00000011921) #20	TEX36 (ENSPTXG00000011922) #21	EDRF1 (ENSPTXG00000011923) #22	UROS (ENSPTXG00000011924) #24	BCCIP (ENSPTXG00000011927) #25	ENSPTXG00000011929 #27	ADAM12 (ENSPTXG00000011931) #28	C10orf90 (ENSPTXG00000011968) #29	ENSPTXG00000011969	DOCK1 (ENSPTXG00000011970) #31	INSYN2A (ENSPTXG00000011971) #30	ENSPTXG00000011972	ENSPTXG00000011973 #33	CLRN3 (ENSPTXG00000011974) #34
Mainland tiger snake	MODERN SPECIES		IKZF5 (ENSNSUG00000000891)	ACADSB (ENSNSUG00000000887)	HMX3 (ENSNSUG00000000884)	HMX2 (ENSNSUG00000000883)	BUB3 (ENSNSUG00000000878) #7	GPR26 (ENSNSUG00000000874) #9	CPXM2 (ENSNSUG00000000866) #10	CHST15 (ENSNSUG00000000864) #12	OAT (ENSNSUG00000000859) #13	LHPP (ENSNSUG00000000857) #15	FAM53B (ENSNSUG00000000856) #16	EEF1AKMT2 (ENSNSUG00000000854) #17	ABRAXAS2 (ENSNSUG00000000823) #18	ZRANB1 (ENSNSUG00000000817) #19	CTBP2 (ENSNSUG00000000680) #20	EDRF1 (ENSNSUG00000000562) #22	UROS (ENSNSUG00000000411) #24	BCCIP (ENSNSUG00000000404) #25	FANK1 (ENSNSUG00000000334) #27	ADAM12 (ENSNSUG00000000295) #28	ENSNSUG00000000283	C10orf90 (ENSNSUG00000000254) #29	INSYN2A (ENSNSUG00000000040) #30	DOCK1 (ENSNSUG00000000002) #31
Blue-lipped sea krait	MODERN SPECIES	3888																EDRF1 (ENSLLTG00000015102) #22	UROS (ENSLLTG00000015114) #24	BCCIP (ENSLLTG00000015125) #25
Indian cobra	MODERN SPECIES	3	ENSNNAG00000003714	ENSNNAG00000003699 #9	ENSNNAG00000003675 #9	CPXM2 (ENSNNAG00000003642) #10	CHST15 (ENSNNAG00000003620) #12	ENSNNAG00000003603	OAT (ENSNNAG00000003584) #13	ENSNNAG00000003572	LHPP (ENSNNAG00000003472) #15	FAM53B (ENSNNAG00000003446) #16	EEF1AKMT2 (ENSNNAG00000003438) #17	ABRAXAS2 (ENSNNAG00000003424) #18	ZRANB1 (ENSNNAG00000003411) #19	CTBP2 (ENSNNAG00000003385) #20	ENSNNAG00000003361	EDRF1 (ENSNNAG00000003301) #22	UROS (ENSNNAG00000003279) #24	BCCIP (ENSNNAG00000003261) #25	FANK1 (ENSNNAG00000003240) #27	ADAM12 (ENSNNAG00000003205) #28	C10orf90 (ENSNNAG00000003185) #29	ENSNNAG00000003178	INSYN2A (ENSNNAG00000003160) #30	DOCK1 (ENSNNAG00000003118) #31	ENSNNAG00000003028	ENSNNAG00000018479 #33	CLRN3 (ENSNNAG00000018476) #34	PTPRE (ENSNNAG00000018466) #35	ENSNNAG00000018459	ENSNNAG00000018458	MGMT (ENSNNAG00000018454) #36
Lizard	MODERN SPECIES	2	CHST15 (ENSACAG00000017532) #12	ENSACAG00000040555	ENSACAG00000039920	ENSACAG00000040270	OAT (ENSACAG00000017543) #13	ENSACAG00000022361	LHPP (ENSACAG00000017564) #15	ENSACAG00000043228	ENSACAG00000044309	FAM53B (ENSACAG00000014398) #16	eef1akmt2 (ENSACAG00000038120) #17	ABRAXAS2 (ENSACAG00000014423) #18	ZRANB1 (ENSACAG00000014485) #19	CTBP2 (ENSACAG00000014547) #20	TEX36 (ENSACAG00000001232) #21	EDRF1 (ENSACAG00000000994) #22	UROS (ENSACAG00000000920) #24	BCCIP (ENSACAG00000000886) #25	FANK1 (ENSACAG00000000847) #27	ADAM12 (ENSACAG00000000456) #28	ENSACAG00000038201	ENSACAG00000017425	ENSACAG00000045427	ENSACAG00000037899	HTRA1 (ENSACAG00000041971)	ENSACAG00000034636	PLEKHA1 (ENSACAG00000043979)	BTBD16 (ENSACAG00000029070)	ENSACAG00000018553	ENSACAG00000017293	NSMCE4A (ENSACAG00000017278)
Laterata	ANCESTRAL SPECIES		ENSGT00940000158286	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.A	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37
Common wall lizard	MODERN SPECIES	13	BUB3 (ENSPMRG00000006076) #7	GPR26 (ENSPMRG00000006065) #9	CPXM2 (ENSPMRG00000006029) #10	CHST15 (ENSPMRG00000006004) #12	OAT (ENSPMRG00000005967) #13	ENSPMRG00000005952	LHPP (ENSPMRG00000005937) #15	FAM53B (ENSPMRG00000005920) #16	EEF1AKMT2 (ENSPMRG00000005908) #17	ENSPMRG00000005902	ABRAXAS2 (ENSPMRG00000005892) #18	ZRANB1 (ENSPMRG00000005886) #19	CTBP2 (ENSPMRG00000005876) #20	ENSPMRG00000005869	TEX36 (ENSPMRG00000005865) #21	EDRF1 (ENSPMRG00000005859) #22	UROS (ENSPMRG00000005850) #24	BCCIP (ENSPMRG00000005844) #25	DHX32 (ENSPMRG00000005833) #26	FANK1 (ENSPMRG00000005824) #27	ADAM12 (ENSPMRG00000005786) #28	C10orf90 (ENSPMRG00000005758) #29	INSYN2A (ENSPMRG00000005741) #30	DOCK1 (ENSPMRG00000005984) #31	ENSPMRG00000005790 #33	CLRN3 (ENSPMRG00000005779) #34	PTPRE (ENSPMRG00000005760) #35	ENSPMRG00000005744	ENSPMRG00000005736	ENSPMRG00000005729	MGMT (ENSPMRG00000005719) #36
Argentine black and white tegu	MODERN SPECIES	58	BUB3 (ENSSMRG00000004592) #7	ENSSMRG00000004627	GPR26 (ENSSMRG00000004632) #9	CPXM2 (ENSSMRG00000004643) #10	CHST15 (ENSSMRG00000004684) #12	OAT (ENSSMRG00000004707) #13	NKX1-2 (ENSSMRG00000004710) #14	LHPP (ENSSMRG00000004798) #15	FAM53B (ENSSMRG00000004817) #16	EEF1AKMT2 (ENSSMRG00000004821) #17	ABRAXAS2 (ENSSMRG00000004833) #18	ZRANB1 (ENSSMRG00000004853) #19	CTBP2 (ENSSMRG00000004886) #20	ENSSMRG00000004947	ENSSMRG00000004954	EDRF1 (ENSSMRG00000004996) #22	UROS (ENSSMRG00000005003) #24	BCCIP (ENSSMRG00000005023) #25	FANK1 (ENSSMRG00000005028) #27	ADAM12 (ENSSMRG00000005049) #28	C10orf90 (ENSSMRG00000005097) #29	DOCK1 (ENSSMRG00000005128) #31	INSYN2A (ENSSMRG00000005178) #30	NPS (ENSSMRG00000005186) #32	ENSSMRG00000005191 #33	ENSSMRG00000005195	CLRN3 (ENSSMRG00000005207) #34	PTPRE (ENSSMRG00000005213) #35	ENSSMRG00000005235	MGMT (ENSSMRG00000005256) #36	ENSSMRG00000005262
Anura	ANCESTRAL SPECIES	130															ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00400000024769 #32	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000171499	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37
Frog	MODERN SPECIES	7	btaf1 (ENSXETG00000012188)	cpeb3 (ENSXETG00000012190)	ENSXETG00000044591	ENSXETG00000042407	marchf5 (ENSXETG00000038834)	ide (ENSXETG00000030851)	kif11 (ENSXETG00000012213)	hhex (ENSXETG00000012215)	exoc6 (ENSXETG00000018180)	cyp26c1 (ENSXETG00000027748)	cyp26a1 (ENSXETG00000018184)	ENSXETG00000045725	aldh18a1 (ENSXETG00000022613)	mrpl51 (ENSXETG00000022612)	tex36 (ENSXETG00000031659)	edrf1 (ENSXETG00000022608) #22	uros (ENSXETG00000025196) #24	mmp21 (ENSXETG00000022588) #23	bccip (ENSXETG00000025198) #25	dhx32 (ENSXETG00000022554) #26	fank1 (ENSXETG00000022551) #27	adam12 (ENSXETG00000022538) #28	c10orf90 (ENSXETG00000036473) #29	ENSXETG00000048958	insyn2a (ENSXETG00000005213) #30	dock1 (ENSXETG00000005204) #31	NPS (ENSXETG00000045080) #32	foxi2 (ENSXETG00000044570) #33	ENSXETG00000044270	clrn3 (ENSXETG00000046844) #34	ptpre (ENSXETG00000005190) #35
Leishan spiny toad	MODERN SPECIES	9	ENSLLEG00000024278	ENSLLEG00000024314	ENSLLEG00000024359	SLC25A28 (ENSLLEG00000024415)	ENTPD7 (ENSLLEG00000024551)	ENSLLEG00000024655	ATP6V0E2 (ENSLLEG00000024672)	COX15 (ENSLLEG00000024720)	CUTC (ENSLLEG00000024824)	ENSLLEG00000015069	DNMBP (ENSLLEG00000015304)	CPN1 (ENSLLEG00000016076)	ENTPD1 (ENSLLEG00000016172)	ALDH18A1 (ENSLLEG00000016471)	TEX36 (ENSLLEG00000016765) #21	EDRF1 (ENSLLEG00000016850) #22	MMP21 (ENSLLEG00000017767) #23	UROS (ENSLLEG00000018283) #24	BCCIP (ENSLLEG00000018565) #25	DHX32 (ENSLLEG00000018646) #26	ENSLLEG00000018754	FANK1 (ENSLLEG00000018784) #27	ADAM12 (ENSLLEG00000018984) #28	ENSLLEG00000019520 #29	ENSLLEG00000019812	DOCK1 (ENSLLEG00000019899) #31	INSYN2A (ENSLLEG00000021802) #30	NPS (ENSLLEG00000021867) #32	CLRN3 (ENSLLEG00000021898) #34	PTPRE (ENSLLEG00000021953) #35	ENSLLEG00000022358
Coelacanth	MODERN SPECIES	434		CPXM2 (ENSLACG00000016580) #10	ENSLACG00000016383	CHST15 (ENSLACG00000016138) #12	OAT (ENSLACG00000015419) #13	ENSLACG00000015234	ENSLACG00000022201	LHPP (ENSLACG00000014675) #15	FAM53B (ENSLACG00000014181) #16	EEF1AKMT2 (ENSLACG00000013816) #17	ABRAXAS2 (ENSLACG00000013589) #18	hpdl (ENSLACG00000013418)	ZRANB1 (ENSLACG00000012712) #19	CTBP2 (ENSLACG00000011865) #20	ENSLACG00000006595	EDRF1 (ENSLACG00000005167) #22	MMP21 (ENSLACG00000004864) #23	UROS (ENSLACG00000004062) #24	BCCIP (ENSLACG00000003776) #25	ENSLACG00000003605 #26
Actinopterygii	ANCESTRAL SPECIES	7	ENSGT00940000160392	ENSGT00950000183091.A.a #7	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00530000063474.A	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00940000161176 #33	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.A	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37
Neopterygii	ANCESTRAL SPECIES	10	ENSGT00950000183091.A.a #7	ENSGT00730000114509	ENSGT00950000183001.a.a #9	ENSGT00940000156414 #10	ENSGT00390000004719 #12	ENSGT00630000089895 #13	ENSGT00940000162535 #14	ENSGT00940000159002 #15	ENSGT00530000063371.B #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00530000063474.A	ENSGT00940000158045 #19	ENSGT00940000154430 #20	ENSGT00390000012491 #21	ENSGT00390000014797 #22	ENSGT00940000159140.d #23	ENSGT00390000009853 #24	ENSGT00390000000696 #25	ENSGT00940000157227 #26	ENSGT00940000160878 #27	ENSGT00940000155495.C #28	ENSGT00940000153123.C #29	ENSGT00940000154974 #31	ENSGT00530000063787.B #30	ENSGT00940000161176 #33	ENSGT00940000164576.a	ENSGT00850000132319.b #34	ENSGT00940000156570.a #35	ENSGT00940000154352.A	ENSGT00390000015799 #36
Osteoglossocephalai	ANCESTRAL SPECIES	282									ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000171352	ENSGT00940000175884	ENSGT00390000014797 #22	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.A	ENSGT01030000234527.A.a.b.a.b
Clupeocephala	ANCESTRAL SPECIES	120	ENSGT00940000155157.a	ENSGT00940000163882	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000154430.c.b #20	ENSGT00940000175884	ENSGT00390000014797 #22	ENSGT00940000156570.b ##35	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000153713.A	ENSGT01030000234527.A.a.b.a.b	ENSGT00970000193390.c.b.b.b.b.b	ENSGT00940000155021	ENSGT01030000234635.a.a.a.b
Euteleosteomorpha	ANCESTRAL SPECIES	84	ENSGT00940000155157.a	ENSGT00940000163882	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000154430.c.b #20	ENSGT00940000175884	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000160878.e #27	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00550000075030	ENSGT00940000160593	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b
Protacanthopterygii	DUPLICATION
Protacanthopterygii	ANCESTRAL SPECIES	323														ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00390000014797.g #22
Salmoninae	ANCESTRAL SPECIES	381	ENSGT00940000156955.a.a.a	ENSGT00940000154525.a	ENSGT00940000155035.n.a.d	ENSGT00940000158286.e.a.c	ENSGT00940000160392.c.b	ENSGT00950000183001.a.a.d.b.f #9	ENSGT00390000004719.a.c #12	ENSGT00940000162535.c #14	ENSGT00530000063371.B.f.c #16	ENSGT00390000013399.s #17	ENSGT00530000063424.a.p #18	ENSGT00940000158045.b.b #19	ENSGT00940000154430.c.b.b #20	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00390000014797.g #22	ENSGT00940000157227.h.a #26	ENSGT00940000155495.C.a.b.d #28
Salmoninae_a	ANCESTRAL SPECIES	16	ENSGT00390000015768.i.a.e	ENSGT00940000156955.a.a.a	ENSGT00940000165331	ENSGT00940000155035.n.a.d	ENSGT00940000158286.e.a.c	ENSGT00940000160392.c.b	ENSGT00950000183001.a.a.d.b.f #9	ENSGT00390000004719.a.c #12	ENSGT00940000162535.c #14	ENSGT00530000063371.B.f.c #16	ENSGT00390000013399.s #17	ENSGT00530000063424.a.p #18	ENSGT00940000158045.b.b #19	ENSGT00940000154430.c.b.b #20	ENSGT00940000175884	ENSGT00390000014797.g #22	ENSGT00940000157227.h.a #26	ENSGT00940000155495.C.a.b.d #28	ENSGT00530000063787.B.d.b.d #30	ENSGT00940000156570.b.h ##35	ENSGT00390000009274.d	ENSGT00990000211460	ENSGT00950000182859.A.b.eb.b.a #37	ENSGT00950000182864.a.a.s.b.b	ENSGT00940000161451.a.b.b	ENSGT00940000153352.B.r	ENSGT00940000155809.p.a	ENSGT00940000155257.b.b.b	ENSGT01030000234563.b.a.b.a.a.c.b.b	ENSGT01030000234563.b.a.b.a.b.b.c	ENSGT00940000156696.A.b
Oncorhynchus	ANCESTRAL SPECIES	17	ENSGT00390000015768.i.a.e	ENSGT00940000156955.a.a.a	ENSGT00940000165331	ENSGT00940000155035.n.a.d	ENSGT00940000158286.e.a.c	ENSGT00940000160392.c.b	ENSGT00950000183001.a.a.d.b.f #9	ENSGT00390000004719.a.c #12	ENSGT00940000162535.c #14	ENSGT00530000063371.B.f.c #16	ENSGT00390000013399.s #17	ENSGT00530000063424.a.p #18	ENSGT00940000158045.b.b #19	ENSGT00940000154430.c.b.b #20	ENSGT00940000175884	ENSGT00390000014797.g #22	ENSGT00940000157227.h.a #26	ENSGT00940000155495.C.a.b.d #28	ENSGT00530000063787.B.d.b.d #30	ENSGT00940000156570.b.h ##35	ENSGT00390000009274.d	ENSGT00990000211460	ENSGT00950000182859.A.b.eb.b.a #37	ENSGT00950000182864.a.a.s.b.b	ENSGT00940000161451.a.b.b	ENSGT00940000153352.B.r	ENSGT00940000155809.p.a	ENSGT00940000155257.b.b.b	ENSGT01030000234563.b.a.b.a.a.c.b.b	ENSGT01030000234563.b.a.b.a.b.b.c	ENSGT00940000156696.A.b
Oncorhynchus_a	ANCESTRAL SPECIES	13	ENSGT00390000015768.i.a.e	ENSGT00940000156955.a.a.a	ENSGT00940000165331	ENSGT00940000155035.n.a.d	ENSGT00940000158286.e.a.c	ENSGT00940000160392.c.b	ENSGT00950000183001.a.a.d.b.f #9	ENSGT00390000004719.a.c #12	ENSGT00940000162535.c #14	ENSGT00530000063371.B.f.c #16	ENSGT00390000013399.s #17	ENSGT00530000063424.a.p #18	ENSGT00940000158045.b.b #19	ENSGT00940000154430.c.b.b #20	ENSGT00940000175884	ENSGT00390000014797.g #22	ENSGT00940000157227.h.a #26	ENSGT00940000155495.C.a.b.d #28	ENSGT00530000063787.B.d.b.d #30	ENSGT00940000156570.b.h ##35	ENSGT00390000009274.d	ENSGT00990000211460	ENSGT00950000182859.A.b.eb.b.a #37	ENSGT00950000182864.a.a.s.b.b	ENSGT00940000161451.a.b.b	ENSGT00940000153352.B.r	ENSGT00940000155809.p.a	ENSGT00940000155257.b.b.b	ENSGT01030000234563.b.a.b.a.a.c.b.b	ENSGT01030000234563.b.a.b.a.b.b.c	ENSGT00940000156696.A.b
Chinook salmon	MODERN SPECIES		WAPL (ENSOTSG00005011850)	htra1a (ENSOTSG00005011801)	ENSOTSG00005011793	ikzf5 (ENSOTSG00005011790)	hmx3a (ENSOTSG00005011787)	hmx2 (ENSOTSG00005011785)	GPR26 (ENSOTSG00005011783) #9	CHST15 (ENSOTSG00005011780) #12	nkx1.2la (ENSOTSG00005011777) #14	FAM53B (ENSOTSG00005011774) #16	eef1akmt2 (ENSOTSG00005011772) #17	abraxas2 (ENSOTSG00005011767) #18	ZRANB1 (ENSOTSG00005011482) #19	ctbp2a (ENSOTSG00005011479) #20	tex36 (ENSOTSG00005011475)	ENSOTSG00005011473 #22	DHX32 (ENSOTSG00005011470) #26	ADAM12 (ENSOTSG00005009293) #28	INSYN2A (ENSOTSG00005009289) #30	ptpreb (ENSOTSG00005001675) ##35	ENSOTSG00005001624	ENSOTSG00005001622	ebf3a (ENSOTSG00005000694) #37	PPP2R2D (ENSOTSG00005000684)	ADRA2A (ENSOTSG00005000681)	smndc1 (ENSOTSG00005000677)	MXI1 (ENSOTSG00005000676)	add3b (ENSOTSG00005000666)	ENSOTSG00005000305	ENSOTSG00005000295	ENSOTSG00005000292
Rainbow trout	MODERN SPECIES	15	ikzf5 (ENSOMYG00000035786)	ENSOMYG00000063033	hmx3a (ENSOMYG00000035780)	hmx2 (ENSOMYG00000035774)	GPR26 (ENSOMYG00000035765) #9	CHST15 (ENSOMYG00000035759) #12	NKX1-2 (ENSOMYG00000045730) #14	FAM53B (ENSOMYG00000045724) #16	EEF1AKMT2 (ENSOMYG00000045721) #17	ABRAXAS2 (ENSOMYG00000045712) #18	ENSOMYG00000066217	ENSOMYG00000045707	ZRANB1 (ENSOMYG00000045704) #19	ctbp2a (ENSOMYG00000045584) #20	ENSOMYG00000045559	ENSOMYG00000045549 #22	ENSOMYG00000045488 #26	ENSOMYG00000044847 #28	ENSOMYG00000044779 #30	ENSOMYG00000042237 ##35	gnrh1 (ENSOMYG00000071433)	ENSOMYG00000051603	ENSOMYG00000041951	ENSOMYG00000041391 #37	ENSOMYG00000068190	ENSOMYG00000041345	ENSOMYG00000060239	ENSOMYG00000041340	ENSOMYG00000052062	smndc1 (ENSOMYG00000041334)	MXI1 (ENSOMYG00000041329)
Huchen	MODERN SPECIES	1192														ENSHHUG00000023735	tex36 (ENSHHUG00000023736)	ENSHHUG00000023740 #22	DHX32 (ENSHHUG00000023747) #26	ADAM12 (ENSHHUG00000023755) #28	ENSHHUG00000023841 #28	ENSHHUG00000023843
Protacanthopterygii	ANCESTRAL SPECIES	85	ENSGT00390000015768.i.a	ENSGT00940000156955.a.a	ENSGT00940000155157.a	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000154430.c.b #20	ENSGT00390000014797.h #22	ENSGT00940000157227.h #26	ENSGT00940000160878.e #27	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b.eb.b #37	ENSGT00950000182864.a.a.s.b	ENSGT00390000013415.a.a.b	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p
Salmoninae	ANCESTRAL SPECIES	74					ENSGT00940000155035.n.a.c	ENSGT00940000158286.e.a.d	ENSGT00940000160392.c.a	ENSGT00950000183001.a.a.d.b.e #9	ENSGT00390000004719.a.d #12	ENSGT00940000162535.d #14	ENSGT00530000063371.B.f.d #16	ENSGT00390000013399.t #17	ENSGT00530000063424.a.o #18	ENSGT00940000158045.b.a #19	ENSGT00940000154430.c.b.a #20	ENSGT00390000014797.h #22	ENSGT00940000157227.h.b #26	ENSGT00940000160878.e #27	ENSGT00940000155495.C.a.b.c #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b.c #30	ENSGT00940000156570.b.g ##35	ENSGT00390000009274.c	ENSGT00390000015799 #36	ENSGT00950000182859.A.b.eb.b.b #37	ENSGT00950000182864.a.a.s.b.a	ENSGT00390000013415.a.a.b	ENSGT00940000161451.a.b.a	ENSGT00940000153352.B.q	ENSGT00940000155809.p.b
Salmoninae_a	ANCESTRAL SPECIES	11	ENSGT00940000156955.a.a.b	ENSGT00940000155157.a	ENSGT00940000157421	ENSGT00940000163009.b.a.a.b.a.e	ENSGT00940000155035.n.a.c	ENSGT00940000158286.e.a.d	ENSGT00940000160392.c.a	ENSGT00950000183001.a.a.d.b.e #9	ENSGT00390000004719.a.d #12	ENSGT00940000162535.d #14	ENSGT00530000063371.B.f.d #16	ENSGT00390000013399.t #17	ENSGT00530000063424.a.o #18	ENSGT00940000158045.b.a #19	ENSGT00940000154430.c.b.a #20	ENSGT00390000014797.h #22	ENSGT00940000157227.h.b #26	ENSGT00940000160878.e #27	ENSGT00940000155495.C.a.b.c #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b.c #30	ENSGT00390000006939.i.b.b	ENSGT00940000156570.b.g ##35	ENSGT00390000009274.c	ENSGT00390000015799 #36	ENSGT00950000182859.A.b.eb.b.b #37	ENSGT00950000182864.a.a.s.b.a	ENSGT00390000013415.a.a.b	ENSGT00940000161451.a.b.a	ENSGT00940000153352.B.q
Salmo	ANCESTRAL SPECIES	29	ENSGT00940000156955.a.a.b	ENSGT00940000155157.a.a	ENSGT00940000157421	ENSGT00940000163009.b.a.a.b.a.e	ENSGT00940000155035.n.a.c	ENSGT00940000158286.e.a.d	ENSGT00940000160392.c.a	ENSGT00950000183001.a.a.d.b.e #9	ENSGT00390000004719.a.d #12	ENSGT00940000162535.d #14	ENSGT00530000063371.B.f.d #16	ENSGT00990000213923	ENSGT00530000063424.a.o #18	ENSGT00940000158045.b.a #19	ENSGT00940000154430.c.b.a #20	ENSGT00390000014797.h #22	ENSGT00940000157227.h.b #26	ENSGT00940000160878.e #27	ENSGT00940000155495.C.a.b.c #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b.c #30	ENSGT00390000006939.i.b.b	ENSGT00940000156570.b.g ##35	ENSGT00390000009274.c	ENSGT00390000015799 #36	ENSGT00950000182859.A.b.eb.b.b #37	ENSGT00950000182864.a.a.s.b.a	ENSGT00390000013415.a.a.b	ENSGT00940000161451.a.b.a	ENSGT00940000153352.B.q
River trout	MODERN SPECIES	35	plekha1a (ENSSTUG00000030123)	vkorc1 (ENSSTUG00000030207)	ENSSTUG00000030216	ENSSTUG00000011849	ikzf5 (ENSSTUG00000011878)	hmx3a (ENSSTUG00000011884)	hmx2 (ENSSTUG00000011897)	GPR26 (ENSSTUG00000011904) #9	CHST15 (ENSSTUG00000011915) #12	nkx1.2la (ENSSTUG00000011919) #14	ENSSTUG00000011926	FAM53B (ENSSTUG00000011932) #16	abraxas2 (ENSSTUG00000011938) #18	zranb1b (ENSSTUG00000011961) #19	ctbp2a (ENSSTUG00000012157) #20	EDRF1 (ENSSTUG00000012509) #22	DHX32 (ENSSTUG00000013348) #26	FANK1 (ENSSTUG00000013457) #27	ADAM12 (ENSSTUG00000013638) #28	ENSSTUG00000015196 #29	ENSSTUG00000015220	INSYN2A (ENSSTUG00000015229) #30	DCAF7 (ENSSTUG00000015241)	ptpreb (ENSSTUG00000015316) ##35	gnrh3 (ENSSTUG00000017052)	MGMT (ENSSTUG00000017064) #36	ebf3a (ENSSTUG00000017088) #37	ENSSTUG00000017239	ENSSTUG00000017274	ADRA2A (ENSSTUG00000017289)	smndc1 (ENSSTUG00000017291)
Atlantic salmon	MODERN SPECIES	9	plekha1a (ENSSSAG00000045944)	ENSSSAG00000113048	ENSSSAG00000066989	ENSSSAG00000112472	ikzf5 (ENSSSAG00000094291)	hmx3a (ENSSSAG00000121773)	hmx2 (ENSSSAG00000045897)	GPR26 (ENSSSAG00000045895) #9	CHST15 (ENSSSAG00000045876) #12	NKX1-2 (ENSSSAG00000045868) #14	FAM53B (ENSSSAG00000045862) #16	ENSSSAG00000045849	ABRAXAS2 (ENSSSAG00000045561) #18	ZRANB1 (ENSSSAG00000045442) #19	CTBP2 (ENSSSAG00000080162) #20	EDRF1 (ENSSSAG00000041556) #22	DHX32 (ENSSSAG00000041385) #26	FANK1 (ENSSSAG00000040835) #27	ADAM12 (ENSSSAG00000040059) #28	cssa18h10orf90 (ENSSSAG00000039977) #29	ENSSSAG00000080323	fam196a (ENSSSAG00000106239) #30	ENSSSAG00000080320	ptpre (ENSSSAG00000080155) ##35	gnrh3 (ENSSSAG00000080135)	ENSSSAG00000080132 #36	ENSSSAG00000085044	ENSSSAG00000080028 #37	ENSSSAG00000084612	ENSSSAG00000079901	ENSSSAG00000079895
Oncorhynchus	ANCESTRAL SPECIES	2	ENSGT00940000156955.a.a.b	ENSGT00940000155157.a	ENSGT00940000157421	ENSGT00940000163009.b.a.a.b.a.e	ENSGT00940000155035.n.a.c	ENSGT00940000158286.e.a.d	ENSGT00940000160392.c.a	ENSGT00950000183001.a.a.d.b.e #9	ENSGT00390000004719.a.d #12	ENSGT00940000162535.d #14	ENSGT00530000063371.B.f.d #16	ENSGT00390000013399.t #17	ENSGT00530000063424.a.o #18	ENSGT00940000158045.b.a #19	ENSGT00940000154430.c.b.a #20	ENSGT00390000014797.h #22	ENSGT00940000157227.h.b #26	ENSGT00940000160878.e #27	ENSGT00940000155495.C.a.b.c #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b.c #30	ENSGT00390000006939.i.b.b	ENSGT00940000156570.b.g ##35	ENSGT00390000009274.c	ENSGT00390000015799 #36	ENSGT00950000182859.A.b.eb.b.b #37	ENSGT00950000182864.a.a.s.b.a	ENSGT00390000013415.a.a.b	ENSGT00940000161451.a.b.a	ENSGT00940000153352.B.q
Oncorhynchus_a	ANCESTRAL SPECIES	1	ENSGT00940000156955.a.a.b	ENSGT00940000155157.a	ENSGT00940000157421	ENSGT00940000163009.b.a.a.b.a.e	ENSGT00940000155035.n.a.c	ENSGT00940000158286.e.a.d	ENSGT00940000160392.c.a	ENSGT00950000183001.a.a.d.b.e #9	ENSGT00390000004719.a.d #12	ENSGT00940000162535.d #14	ENSGT00530000063371.B.f.d #16	ENSGT00390000013399.t #17	ENSGT00530000063424.a.o #18	ENSGT00940000158045.b.a #19	ENSGT00940000154430.c.b.a #20	ENSGT00390000014797.h #22	ENSGT00940000157227.h.b #26	ENSGT00940000160878.e #27	ENSGT00940000155495.C.a.b.c #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b.c #30	ENSGT00940000156570.b.g ##35	ENSGT00390000009274.c	ENSGT00390000015799 #36	ENSGT00950000182859.A.b.eb.b.b #37	ENSGT00950000182864.a.a.s.b.a	ENSGT00390000013415.a.a.b	ENSGT00940000161451.a.b.a	ENSGT00940000153352.B.q	ENSGT00940000155809.p.b
Chinook salmon	MODERN SPECIES	30	htra1a (ENSOTSG00005015173)	plekha1a (ENSOTSG00005015168)	vkorc1 (ENSOTSG00005015166)	ENSOTSG00005015129	ikzf5 (ENSOTSG00005015128)	hmx3a (ENSOTSG00005015127)	hmx2 (ENSOTSG00005015126)	GPR26 (ENSOTSG00005015125) #9	CHST15 (ENSOTSG00005015124) #12	nkx1.2la (ENSOTSG00005015123) #14	FAM53B (ENSOTSG00005015122) #16	eef1akmt2 (ENSOTSG00005015121) #17	abraxas2 (ENSOTSG00005015118) #18	zranb1b (ENSOTSG00005015103) #19	CTBP2 (ENSOTSG00005015059) #20	EDRF1 (ENSOTSG00005014797) #22	DHX32 (ENSOTSG00005014759) #26	FANK1 (ENSOTSG00005014756) #27	ADAM12 (ENSOTSG00005014752) #28	ENSOTSG00005014744 #29	ENSOTSG00005014743	INSYN2A (ENSOTSG00005014742) #30	ptpreb (ENSOTSG00005010717) ##35	mgmt (ENSOTSG00005010708) #36	ebf3a (ENSOTSG00005010274) #37	PPP2R2D (ENSOTSG00005010273)	BNIP3 (ENSOTSG00005010272)	ADRA2A (ENSOTSG00005010271)	smndc1 (ENSOTSG00005010270)	MXI1 (ENSOTSG00005010269)	add3b (ENSOTSG00005008116)
Coho salmon	MODERN SPECIES	24	vkorc1 (ENSOKIG00005030782)	ENSOKIG00005030588	ikzf5 (ENSOKIG00005030566)	hmx3a (ENSOKIG00005030533)	hmx2 (ENSOKIG00005030519)	GPR26 (ENSOKIG00005030504) #9	ENSOKIG00005030492	CHST15 (ENSOKIG00005030463) #12	ENSOKIG00005030454	NKX1-2 (ENSOKIG00005030448) #14	FAM53B (ENSOKIG00005030432) #16	ENSOKIG00005030394 #17	ABRAXAS2 (ENSOKIG00005030039) #18	zranb1b (ENSOKIG00005029861) #19	ENSOKIG00005029252	EDRF1 (ENSOKIG00005028763) #22	DHX32 (ENSOKIG00005028676) #26	FANK1 (ENSOKIG00005028623) #27	ADAM12 (ENSOKIG00005049628) #28	ENSOKIG00005049602 #29	ENSOKIG00005049600	INSYN2A (ENSOKIG00005049598) #30	ptpreb (ENSOKIG00005049523) ##35	ENSOKIG00005049478	mgmt (ENSOKIG00005049460) #36	ebf3a (ENSOKIG00005049203) #37	PPP2R2D (ENSOKIG00005049155)	ENSOKIG00005049148	ADRA2A (ENSOKIG00005049141)	smndc1 (ENSOKIG00005049134)	MXI1 (ENSOKIG00005049130)
Rainbow trout	MODERN SPECIES		ENSOMYG00000027442	ENSOMYG00000027402	ENSOMYG00000027397	ENSOMYG00000027388	ikzf5 (ENSOMYG00000027377)	hmx3a (ENSOMYG00000027361)	hmx2 (ENSOMYG00000077695)	ENSOMYG00000060375	GPR26 (ENSOMYG00000027350) #9	CHST15 (ENSOMYG00000027294) #12	NKX1-2 (ENSOMYG00000027268) #14	FAM53B (ENSOMYG00000027251) #16	ABRAXAS2 (ENSOMYG00000027121) #18	zranb1b (ENSOMYG00000027010) #19	CTBP2 (ENSOMYG00000026523) #20	EDRF1 (ENSOMYG00000026199) #22	DHX32 (ENSOMYG00000026057) #26	FANK1 (ENSOMYG00000026035) #27	ADAM12 (ENSOMYG00000024666) #28	ENSOMYG00000024296	ENSOMYG00000024261 #29	ENSOMYG00000071507	ENSOMYG00000024224	INSYN2A (ENSOMYG00000024213) #30	ENSOMYG00000024208	ENSOMYG00000019968 ##35	ENSOMYG00000041955	ENSOMYG00000019708 #36	ENSOMYG00000019581 #37	ENSOMYG00000019439	bnip3 (ENSOMYG00000019362)
Huchen	MODERN SPECIES	876								GPR26 (ENSHHUG00000017032) #9	CHST15 (ENSHHUG00000017022) #12	nkx1.2la (ENSHHUG00000017018) #14	FAM53B (ENSHHUG00000017014) #16	ENSHHUG00000017004	abraxas2 (ENSHHUG00000017002) #18	zranb1b (ENSHHUG00000016916) #19	CTBP2 (ENSHHUG00000016851) #20	EDRF1 (ENSHHUG00000016670) #22	DHX32 (ENSHHUG00000016652) #26	FANK1 (ENSHHUG00000016593) #27	ADAM12 (ENSHHUG00000016566) #28
Northern pike	MODERN SPECIES	5	ENSELUG00000005983	ENSELUG00000006009	GRID1 (ENSELUG00000006093)	WAPL (ENSELUG00000006185)	htra1a (ENSELUG00000006224)	plekha1a (ENSELUG00000006285)	ikzf5 (ENSELUG00000006321)	hmx3a (ENSELUG00000006336)	hmx2 (ENSELUG00000006349)	nkx1.2la (ENSELUG00000006359) #14	FAM53B (ENSELUG00000006379) #16	eef1akmt2 (ENSELUG00000000203) #17	abraxas2 (ENSELUG00000006421) #18	zranb1b (ENSELUG00000006442) #19	ctbp2a (ENSELUG00000006494) #20	EDRF1 (ENSELUG00000006602) #22	DHX32 (ENSELUG00000006659) #26	FANK1 (ENSELUG00000006677) #27	ADAM12 (ENSELUG00000006707) #28	ENSELUG00000006721 #29	ENSELUG00000001324	INSYN2A (ENSELUG00000006780) #30	gnrh3 (ENSELUG00000006783)	ENSELUG00000028686	mgmt (ENSELUG00000006809) #36	ebf3a (ENSELUG00000001507) #37	PPP2R2D (ENSELUG00000006894)	smndc1 (ENSELUG00000025724)	MXI1 (ENSELUG00000000233)	add3b (ENSELUG00000007003)	ENSELUG00000007063
Acanthomorphata	ANCESTRAL SPECIES	24	ENSGT00510000047893	ENSGT00390000012040	ENSGT00890000139531	ENSGT00940000154525.a	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000154430.c.b #20	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000160878.e #27	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p
Cod	MODERN SPECIES	6	nt5c2a (ENSGMOG00000016201)	ENSGMOG00000011257	borcs7 (ENSGMOG00000011250)	cyp17a1 (ENSGMOG00000011243)	ENSGMOG00000004318	fbxw4 (ENSGMOG00000015043)	fgf8a (ENSGMOG00000015070)	slc2a15a (ENSGMOG00000016589)	ENSGMOG00000016612	tlx1 (ENSGMOG00000014671)	ENSGMOG00000027921	cep68 (ENSGMOG00000032092)	ENSGMOG00000004888	zgc:153169 (ENSGMOG00000036949)	ENSGMOG00000036040	EDRF1 (ENSGMOG00000004831) #22	DHX32 (ENSGMOG00000029453) #26	ENSGMOG00000037183	ENSGMOG00000019873	ADAM12 (ENSGMOG00000002539) #28	ENSGMOG00000033058 #29	ENSGMOG00000009032	INSYN2A (ENSGMOG00000032885) #30	ENSGMOG00000016693 ##35	GnRH3 (ENSGMOG00000016680)	ENSGMOG00000016672 #36	ENSGMOG00000016636 #37	ENSGMOG00000016614	ENSGMOG00000016595	smndc1 (ENSGMOG00000016585)	ENSGMOG00000016547
Euacanthomorphacea	ANCESTRAL SPECIES	6	ENSGT00390000012040	ENSGT00890000139531	ENSGT00940000163882	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000154430.c.b #20	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000160878.e #27	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p
Pinecone sodierfish	MODERN SPECIES	6	pgbd5 (ENSMMDG00005006859)	cog2 (ENSMMDG00005006865)	agt (ENSMMDG00005006903)	ENSMMDG00005006910	ikzf5 (ENSMMDG00005006922)	hmx3a (ENSMMDG00005006926)	hmx2 (ENSMMDG00005006928)	GPR26 (ENSMMDG00005006932) #9	CHST15 (ENSMMDG00005006940) #12	nkx1.2la (ENSMMDG00005006945) #14	FAM53B (ENSMMDG00005006946) #16	eef1akmt2 (ENSMMDG00005006948) #17	abraxas2 (ENSMMDG00005006953) #18	zranb1b (ENSMMDG00005006962) #19	ctbp2a (ENSMMDG00005006978) #20	EDRF1 (ENSMMDG00005007034) #22	DHX32 (ENSMMDG00005009573) #26	FANK1 (ENSMMDG00005009593) #27	ADAM12 (ENSMMDG00005009602) #28	ENSMMDG00005009609	ENSMMDG00005009626	INSYN2A (ENSMMDG00005009980) #30	ptpreb (ENSMMDG00005010002) ##35	ENSMMDG00005010020	mgmt (ENSMMDG00005010022) #36	ebf3a (ENSMMDG00005010024) #37	ppp2r2d (ENSMMDG00005010034)	bnip3 (ENSMMDG00005010409)	ADRA2A (ENSMMDG00005010413)	smndc1 (ENSMMDG00005010414)	ENSMMDG00005010415
Percomorphaceae	ANCESTRAL SPECIES	5	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000154430.c.b #20	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Percomorphaceae_B	ANCESTRAL SPECIES	4	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000154430.c.b #20	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Percomorphaceae_C	ANCESTRAL SPECIES	18	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000154430.c.b #20	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Eupercaria	ANCESTRAL SPECIES	15	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00940000154430.c.b #20	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Eupecaria_A	ANCESTRAL SPECIES	1	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00940000154430.c.b #20	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Ballan wrasse	MODERN SPECIES	126	pgbd5 (ENSLBEG00000021851)	cog2 (ENSLBEG00000021885)	agt (ENSLBEG00000021945)	ENSLBEG00000022098	ikzf5 (ENSLBEG00000022347)	hmx3a (ENSLBEG00000022358)	hmx2 (ENSLBEG00000022371)	GPR26 (ENSLBEG00000022389) #9	CHST15 (ENSLBEG00000022406) #12	nkx1.2la (ENSLBEG00000022421) #14	FAM53B (ENSLBEG00000022435) #16	eef1akmt2 (ENSLBEG00000022458) #17	abraxas2 (ENSLBEG00000022481) #18	zranb1b (ENSLBEG00000022522) #19	ENSLBEG00000022591	EDRF1 (ENSLBEG00000022672) #22	DHX32 (ENSLBEG00000022769) #26	ADAM12 (ENSLBEG00000022800) #28	ENSLBEG00000022834 #29	ENSLBEG00000022848	INSYN2A (ENSLBEG00000022874) #30
Eupecaria_B	ANCESTRAL SPECIES	3	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00940000154430.c.b #20	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Perciformes	ANCESTRAL SPECIES	17	ENSGT00390000012040	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000154430.c.b #20	ENSGT00940000166669.a	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Cottioidei	ANCESTRAL SPECIES	17	ENSGT00510000047893	ENSGT00390000012040	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000154430.c.b #20	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Lumpfish	MODERN SPECIES	6	pgbd5 (ENSCLMG00005020592)	cog2 (ENSCLMG00005020593)	agt (ENSCLMG00005020596)	ENSCLMG00005020599	ikzf5 (ENSCLMG00005020619)	hmx3a (ENSCLMG00005020621)	hmx2 (ENSCLMG00005020622)	GPR26 (ENSCLMG00005020623) #9	CHST15 (ENSCLMG00005020624) #12	nkx1.2la (ENSCLMG00005020626) #14	FAM53B (ENSCLMG00005020627) #16	eef1akmt2 (ENSCLMG00005020628) #17	abraxas2 (ENSCLMG00005020630) #18	zranb1b (ENSCLMG00005020632) #19	ctbp2a (ENSCLMG00005020689) #20	EDRF1 (ENSCLMG00005020733) #22	DHX32 (ENSCLMG00005021096) #26	ADAM12 (ENSCLMG00005021115) #28	ENSCLMG00005021116 #29	ENSCLMG00005021117	INSYN2A (ENSCLMG00005021119) #30	ptpreb (ENSCLMG00005021122) ##35	gnrh3 (ENSCLMG00005021123)	mgmt (ENSCLMG00005021124) #36	ebf3a (ENSCLMG00005021128) #37	ppp2r2d (ENSCLMG00005021158)	bnip3 (ENSCLMG00005021300)	ADRA2A (ENSCLMG00005021301)	smndc1 (ENSCLMG00005021303)	ENSCLMG00005021304	add3b (ENSCLMG00005021305)
Stickleback	MODERN SPECIES	6	cog2 (ENSGACG00000009756)	agt (ENSGACG00000009742)	ENSGACG00000009735	ENSGACG00000009734	ikzf5 (ENSGACG00000009720)	hmx3a (ENSGACG00000009716)	hmx2 (ENSGACG00000009712)	GPR26 (ENSGACG00000009708) #9	CHST15 (ENSGACG00000009700) #12	nkx1.2la (ENSGACG00000009698) #14	FAM53B (ENSGACG00000009695) #16	eef1akmt2 (ENSGACG00000009677) #17	abraxas2 (ENSGACG00000009665) #18	zranb1b (ENSGACG00000009658) #19	ENSGACG00000009651	EDRF1 (ENSGACG00000009631) #22	ADAM12 (ENSGACG00000009617) #28	ENSGACG00000009613 #29	INSYN2A (ENSGACG00000009611) #30	ptpreb (ENSGACG00000009597) ##35	gnrh3 (ENSGACG00000009582)	mgmt (ENSGACG00000009577) #36	ebf3a (ENSGACG00000009548) #37	ppp2r2d (ENSGACG00000009543)	bnip3 (ENSGACG00000009527)	ADRA2A (ENSGACG00000009518)	smndc1 (ENSGACG00000009468)	MXI1 (ENSGACG00000009461)	add3b (ENSGACG00000009438)	ENSGACG00000009419	ENSGACG00000009390
Perciformes_a	ANCESTRAL SPECIES	16	ENSGT00510000047893	ENSGT00390000012040	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000166669.a	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b	ENSGT01030000234563.b.a.b.a.a.c.b
Pike perch	MODERN SPECIES	10	pgbd5 (ENSSLUG00000024191)	cog2 (ENSSLUG00000024180)	agt (ENSSLUG00000024166)	ENSSLUG00000024149	ikzf5 (ENSSLUG00000024144)	hmx3a (ENSSLUG00000024143)	hmx2 (ENSSLUG00000024142)	GPR26 (ENSSLUG00000024137) #9	CHST15 (ENSSLUG00000024130) #12	nkx1.2la (ENSSLUG00000024124) #14	FAM53B (ENSSLUG00000024119) #16	eef1akmt2 (ENSSLUG00000024110) #17	abraxas2 (ENSSLUG00000024101) #18	zranb1b (ENSSLUG00000024064) #19	ENSSLUG00000024016	EDRF1 (ENSSLUG00000023739) #22	DHX32 (ENSSLUG00000023632) #26	ENSSLUG00000023095	INSYN2A (ENSSLUG00000023073) #30	ENSSLUG00000023070	ENSSLUG00000023067	ptpreb (ENSSLUG00000021492) ##35	gnrh3 (ENSSLUG00000021338)	mgmt (ENSSLUG00000021335) #36	ebf3a (ENSSLUG00000021239) #37	ppp2r2d (ENSSLUG00000021191)	bnip3 (ENSSLUG00000021172)	ADRA2A (ENSSLUG00000021167)	smndc1 (ENSSLUG00000021165)	MXI1 (ENSSLUG00000021161)	add3b (ENSSLUG00000019883)
Channel bull blenny	MODERN SPECIES	6	pgbd5 (ENSCGOG00000023358)	cog2 (ENSCGOG00000023189)	agt (ENSCGOG00000023185)	ENSCGOG00000023176	ikzf5 (ENSCGOG00000023175)	hmx3a (ENSCGOG00000023174)	hmx2 (ENSCGOG00000023172)	GPR26 (ENSCGOG00000023169) #9	CHST15 (ENSCGOG00000023167) #12	nkx1.2la (ENSCGOG00000023165) #14	FAM53B (ENSCGOG00000023164) #16	eef1akmt2 (ENSCGOG00000023163) #17	abraxas2 (ENSCGOG00000023153) #18	zranb1b (ENSCGOG00000023103) #19	ENSCGOG00000022992	EDRF1 (ENSCGOG00000022860) #22	DHX32 (ENSCGOG00000022833) #26	ADAM12 (ENSCGOG00000022763) #28	ENSCGOG00000022751	INSYN2A (ENSCGOG00000022750) #30	ptpreb (ENSCGOG00000021401) ##35	gnrh3 (ENSCGOG00000021323)	mgmt (ENSCGOG00000021318) #36	ebf3a (ENSCGOG00000020565) #37	ppp2r2d (ENSCGOG00000019341)	bnip3 (ENSCGOG00000020541)	ADRA2A (ENSCGOG00000019305)	smndc1 (ENSCGOG00000019299)	MXI1 (ENSCGOG00000019295)	add3b (ENSCGOG00000019210)	ENSCGOG00000018838
Eupecaria_C	ANCESTRAL SPECIES	1	ENSGT00390000012040	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	1	ENSGT00390000012040	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
European seabass	MODERN SPECIES	1	PIBF1 (ENSDLAG00005005373)	KLF5 (ENSDLAG00005026528)	pgbd5 (ENSDLAG00005033310)	ENSDLAG00005005047	agt (ENSDLAG00005005006)	ikzf5 (ENSDLAG00005004889)	hmx3a (ENSDLAG00005029890)	hmx2 (ENSDLAG00005004872)	GPR26 (ENSDLAG00005004869) #9	CHST15 (ENSDLAG00005004859) #12	NKX1-2 (ENSDLAG00005004853) #14	FAM53B (ENSDLAG00005004845) #16	EEF1AKMT2 (ENSDLAG00005004836) #17	ZRANB1 (ENSDLAG00005032089) #19	ENSDLAG00005004083	EDRF1 (ENSDLAG00005002093) #22	DHX32 (ENSDLAG00005002026) #26	ADAM12 (ENSDLAG00005001879) #28	ENSDLAG00005031375 #29	ENSDLAG00005001842	INSYN2A (ENSDLAG00005001838) #30	ENSDLAG00005000663 ##35	ENSDLAG00005000513 #36	ENSDLAG00005000240 #37	ENSDLAG00005000084	ENSDLAG00005034636	ENSDLAG00005000074	smndc1 (ENSDLAG00005000071)	MXI1 (ENSDLAG00005027479)	ADD3 (ENSDLAG00005021997)	ENSDLAG00005021484
Large yellow croaker	MODERN SPECIES	2	cog2 (ENSLCRG00005020941)	agt (ENSLCRG00005020940)	ENSLCRG00005020939	ikzf5 (ENSLCRG00005020938)	hmx3a (ENSLCRG00005020937)	hmx2 (ENSLCRG00005020935)	GPR26 (ENSLCRG00005020932) #9	GPR26 (ENSLCRG00005020930) #9	CHST15 (ENSLCRG00005020928) #12	FAM53B (ENSLCRG00005020926) #16	eef1akmt2 (ENSLCRG00005020924) #17	abraxas2 (ENSLCRG00005020922) #18	zranb1b (ENSLCRG00005020911) #19	ENSLCRG00005020897	tex36 (ENSLCRG00005020892)	EDRF1 (ENSLCRG00005020346) #22	DHX32 (ENSLCRG00005020332) #26	ADAM12 (ENSLCRG00005020258) #28	ENSLCRG00005020254 #29	ENSLCRG00005020253	INSYN2A (ENSLCRG00005020250) #30	ptpreb (ENSLCRG00005017800) ##35	gnrh3 (ENSLCRG00005017745)	mgmt (ENSLCRG00005017741) #36	ebf3a (ENSLCRG00005017724) #37	ppp2r2d (ENSLCRG00005017277)	bnip3 (ENSLCRG00005017265)	ADRA2A (ENSLCRG00005017263)	smndc1 (ENSLCRG00005017261)	MXI1 (ENSLCRG00005017259)	add3b (ENSLCRG00005016619)
Gilthead seabream	MODERN SPECIES	6	cog2 (ENSSAUG00010002296)	agt (ENSSAUG00010002305)	ENSSAUG00010002311	ikzf5 (ENSSAUG00010002319)	hmx3a (ENSSAUG00010002324)	hmx2 (ENSSAUG00010002329)	GPR26 (ENSSAUG00010002331) #9	CHST15 (ENSSAUG00010002337) #12	nkx1.2la (ENSSAUG00010002344) #14	FAM53B (ENSSAUG00010002351) #16	eef1akmt2 (ENSSAUG00010002354) #17	abraxas2 (ENSSAUG00010002361) #18	zranb1b (ENSSAUG00010002370) #19	ENSSAUG00010002526	tex36 (ENSSAUG00010002920)	EDRF1 (ENSSAUG00010003005) #22	DHX32 (ENSSAUG00010005172) #26	ADAM12 (ENSSAUG00010005289) #28	ENSSAUG00010007274 #29	ENSSAUG00010007279	INSYN2A (ENSSAUG00010007283) #30	ptpreb (ENSSAUG00010007329) ##35	mgmt (ENSSAUG00010008621) #36	ebf3a (ENSSAUG00010008633) #37	ppp2r2d (ENSSAUG00010008658)	bnip3 (ENSSAUG00010008755)	ADRA2A (ENSSAUG00010008758)	smndc1 (ENSSAUG00010008762)	MXI1 (ENSSAUG00010008765)	add3b (ENSSAUG00010008801)	ENSSAUG00010011063
Tetraodontidae	ANCESTRAL SPECIES	7	ENSGT00390000000854.c.b	ENSGT00390000003133	ENSGT00950000183175.A.c	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000166669.a	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b	ENSGT01030000234563.b.a.b.a.a.c.b
Fugu	MODERN SPECIES	16	ENSTRUG00000029372	glud1a (ENSTRUG00000003861)	shld2 (ENSTRUG00000003826)	sncga (ENSTRUG00000003569)	RTN4 (ENSTRUG00000003060)	hmx3a (ENSTRUG00000001117)	hmx2 (ENSTRUG00000022942)	GPR26 (ENSTRUG00000001163) #9	CHST15 (ENSTRUG00000001214) #12	nkx1.2la (ENSTRUG00000001257) #14	FAM53B (ENSTRUG00000001282) #16	eef1akmt2 (ENSTRUG00000001336) #17	abraxas2 (ENSTRUG00000025835) #18	zranb1b (ENSTRUG00000001497) #19	ENSTRUG00000025392	EDRF1 (ENSTRUG00000001948) #22	DHX32 (ENSTRUG00000002834) #26	ADAM12 (ENSTRUG00000003817) #28	ENSTRUG00000031598 #29	INSYN2A (ENSTRUG00000031929) #30	ptpreb (ENSTRUG00000004436) ##35	gnrh3 (ENSTRUG00000005572)	mgmt (ENSTRUG00000023887) #36	ebf3a (ENSTRUG00000005721) #37	ENSTRUG00000008351	SH3PXD2A (ENSTRUG00000008431)	slka (ENSTRUG00000008662)	ENSTRUG00000024473	ENSTRUG00000024457	ENSTRUG00000023728	ENSTRUG00000009851
Tetraodon	MODERN SPECIES	9	ENSTNIG00000013356	ENSTNIG00000013355	rtn4a (ENSTNIG00000013354)	ENSTNIG00000013353	ikzf5 (ENSTNIG00000013352)	hmx3a (ENSTNIG00000013351)	hmx2 (ENSTNIG00000013350)	GPR26 (ENSTNIG00000013349) #9	CHST15 (ENSTNIG00000013348) #12	nkx1.2la (ENSTNIG00000013347) #14	FAM53B (ENSTNIG00000013346) #16	eef1akmt2 (ENSTNIG00000013345) #17	abraxas2 (ENSTNIG00000013344) #18	zranb1b (ENSTNIG00000000061) #19	ENSTNIG00000013343	EDRF1 (ENSTNIG00000013342) #22	DHX32 (ENSTNIG00000013341) #26	ADAM12 (ENSTNIG00000013340) #28	INSYN2A (ENSTNIG00000013339) #30	ptpreb (ENSTNIG00000013338) ##35	ENSTNIG00000013337	MGMT (ENSTNIG00000013336) #36	ENSTNIG00000013335 #37	ppp2r2d (ENSTNIG00000013334)	bnip3 (ENSTNIG00000013333)	ADRA2A (ENSTNIG00000013332)	smndc1 (ENSTNIG00000013331)	MXI1 (ENSTNIG00000013330)	add3b (ENSTNIG00000013329)	ENSTNIG00000013328	ENSTNIG00000013327
Percomorphaceae_D	ANCESTRAL SPECIES	19	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000154430.c.b #20	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Anabantaria	ANCESTRAL SPECIES	17	ENSGT00390000012040	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Zig-zag eel	MODERN SPECIES	6	ENSMAMG00000016952	agt (ENSMAMG00000017000)	ENSMAMG00000027794	IKZF5 (ENSMAMG00000025611)	hmx3a (ENSMAMG00000017045)	hmx2 (ENSMAMG00000017056)	GPR26 (ENSMAMG00000017081) #9	CHST15 (ENSMAMG00000017099) #12	NKX1-2 (ENSMAMG00000017118) #14	FAM53B (ENSMAMG00000017131) #16	EEF1AKMT2 (ENSMAMG00000017142) #17	ABRAXAS2 (ENSMAMG00000017165) #18	ZRANB1 (ENSMAMG00000017186) #19	ENSMAMG00000017225	ENSMAMG00000017264	EDRF1 (ENSMAMG00000017278) #22	DHX32 (ENSMAMG00000017334) #26	ADAM12 (ENSMAMG00000017378) #28	ENSMAMG00000017395 #29	ENSMAMG00000017408	INSYN2A (ENSMAMG00000017411) #30	ENSMAMG00000017435 ##35	ENSMAMG00000017760	MGMT (ENSMAMG00000018143) #36	ebf3a (ENSMAMG00000018163) #37	PPP2R2D (ENSMAMG00000018190)	bnip3 (ENSMAMG00000018204)	ENSMAMG00000018222	smndc1 (ENSMAMG00000018233)	ENSMAMG00000018259	ADD3 (ENSMAMG00000018273)
Anabantoidei	ANCESTRAL SPECIES	17	ENSGT00390000012040	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Climbing perch	MODERN SPECIES	6	ENSATEG00000008055	agt (ENSATEG00000008022)	ENSATEG00000007980	ikzf5 (ENSATEG00000007949)	hmx3a (ENSATEG00000007934)	hmx2 (ENSATEG00000007924)	GPR26 (ENSATEG00000007904) #9	CHST15 (ENSATEG00000007890) #12	NKX1-2 (ENSATEG00000007877) #14	FAM53B (ENSATEG00000007864) #16	EEF1AKMT2 (ENSATEG00000007817) #17	ABRAXAS2 (ENSATEG00000007763) #18	ZRANB1 (ENSATEG00000007705) #19	ENSATEG00000007648	ENSATEG00000026049	EDRF1 (ENSATEG00000007531) #22	DHX32 (ENSATEG00000007501) #26	ADAM12 (ENSATEG00000007492) #28	ENSATEG00000007485 #29	ENSATEG00000007472	INSYN2A (ENSATEG00000007454) #30	ENSATEG00000007392 ##35	ENSATEG00000007047	MGMT (ENSATEG00000007031) #36	ebf3a (ENSATEG00000006975) #37	PPP2R2D (ENSATEG00000026322)	bnip3 (ENSATEG00000025756)	ENSATEG00000006876	smndc1 (ENSATEG00000006830)	MXI1 (ENSATEG00000006823)	ADD3 (ENSATEG00000006773)
Siamese fighting fish	MODERN SPECIES	6	pgbd5 (ENSBSLG00000025600)	cog2 (ENSBSLG00000025459)	agt (ENSBSLG00000025374)	ENSBSLG00000025373	ikzf5 (ENSBSLG00000025372)	hmx3a (ENSBSLG00000025371)	hmx2 (ENSBSLG00000025370)	GPR26 (ENSBSLG00000025369) #9	CHST15 (ENSBSLG00000025368) #12	nkx1.2la (ENSBSLG00000025365) #14	FAM53B (ENSBSLG00000025363) #16	eef1akmt2 (ENSBSLG00000025361) #17	abraxas2 (ENSBSLG00000025359) #18	zranb1b (ENSBSLG00000025350) #19	ENSBSLG00000025348	EDRF1 (ENSBSLG00000025341) #22	DHX32 (ENSBSLG00000025333) #26	ADAM12 (ENSBSLG00000025331) #28	ENSBSLG00000025323 #29	ENSBSLG00000025321	INSYN2A (ENSBSLG00000025319) #30	ENSBSLG00000025318	INSYN2A (ENSBSLG00000025316) #30	ptpreb (ENSBSLG00000025291) ##35	ENSBSLG00000025258	mgmt (ENSBSLG00000025255) #36	ebf3a (ENSBSLG00000025213) #37	ppp2r2d (ENSBSLG00000025168)	bnip3 (ENSBSLG00000025160)	smndc1 (ENSBSLG00000025158)	MXI1 (ENSBSLG00000025156)
Carangaria	ANCESTRAL SPECIES	19	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000154430.c.b #20	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Carangaria_A	ANCESTRAL SPECIES	25	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000154430.c.b #20	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Seriola	ANCESTRAL SPECIES	17	ENSGT00390000012040	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Greater amberjack	MODERN SPECIES	147	cog2 (ENSSDUG00000016415)	agt (ENSSDUG00000016338)	ENSSDUG00000016263	ikzf5 (ENSSDUG00000016246)	hmx3a (ENSSDUG00000016239)	hmx2 (ENSSDUG00000016233)	GPR26 (ENSSDUG00000016224) #9	CHST15 (ENSSDUG00000016215) #12	nkx1.2la (ENSSDUG00000016204) #14	FAM53B (ENSSDUG00000016195) #16	eef1akmt2 (ENSSDUG00000016179) #17	abraxas2 (ENSSDUG00000016141) #18	ZRANB1 (ENSSDUG00000016090) #19	ENSSDUG00000016025	tex36 (ENSSDUG00000016010)	EDRF1 (ENSSDUG00000015911) #22	DHX32 (ENSSDUG00000015874) #26	ADAM12 (ENSSDUG00000015848) #28	ENSSDUG00000015800	INSYN2A (ENSSDUG00000015783) #30	ptpreb (ENSSDUG00000015498) ##35	gnrh3 (ENSSDUG00000015470)	mgmt (ENSSDUG00000015462) #36	ebf3a (ENSSDUG00000015426) #37	ppp2r2d (ENSSDUG00000015401)	ENSSDUG00000015389	bnip3 (ENSSDUG00000015359)	ADRA2A (ENSSDUG00000015352)	smndc1 (ENSSDUG00000015330)	MXI1 (ENSSDUG00000015315)	add3b (ENSSDUG00000015218)
Yellowtail amberjack	MODERN SPECIES	2972	cog2 (ENSSLDG00000016487)	agt (ENSSLDG00000016535)	ENSSLDG00000016560	ikzf5 (ENSSLDG00000016583)	hmx3a (ENSSLDG00000016599)	hmx2 (ENSSLDG00000016612)	GPR26 (ENSSLDG00000016641) #9	CHST15 (ENSSLDG00000016662) #12	nkx1.2la (ENSSLDG00000016675) #14	FAM53B (ENSSLDG00000016683) #16	eef1akmt2 (ENSSLDG00000016698) #17	abraxas2 (ENSSLDG00000016731) #18	ZRANB1 (ENSSLDG00000016768) #19	ENSSLDG00000016816	tex36 (ENSSLDG00000016864)	EDRF1 (ENSSLDG00000016919) #22	DHX32 (ENSSLDG00000017045) #26	ADAM12 (ENSSLDG00000017074) #28
Barramundi perch	MODERN SPECIES	137	pgbd5 (ENSLCAG00010012329)	cog2 (ENSLCAG00010012296)	agt (ENSLCAG00010012277)	ENSLCAG00010012272	ikzf5 (ENSLCAG00010012265)	hmx3a (ENSLCAG00010012259)	hmx2 (ENSLCAG00010012256)	GPR26 (ENSLCAG00010012254) #9	CHST15 (ENSLCAG00010012246) #12	nkx1.2la (ENSLCAG00010012238) #14	FAM53B (ENSLCAG00010012235) #16	eef1akmt2 (ENSLCAG00010012230) #17	abraxas2 (ENSLCAG00010012225) #18	zranb1b (ENSLCAG00010012220) #19	ctbp2a (ENSLCAG00010012196) #20	EDRF1 (ENSLCAG00010011995) #22	DHX32 (ENSLCAG00010011925) #26	ADAM12 (ENSLCAG00010011859) #28	ENSLCAG00010011835 #29	ENSLCAG00010011833	INSYN2A (ENSLCAG00010011826) #30	ptpreb (ENSLCAG00010010517) ##35	ENSLCAG00010010221	mgmt (ENSLCAG00010010214) #36	ebf3a (ENSLCAG00010009962) #37	ppp2r2d (ENSLCAG00010009854)	bnip3 (ENSLCAG00010009847)	ADRA2A (ENSLCAG00010009829)	smndc1 (ENSLCAG00010009821)	MXI1 (ENSLCAG00010009819)	add3b (ENSLCAG00010009780)
Pleuronectoidei	ANCESTRAL SPECIES	25	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000154430.c.b #20	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Tongue sole	MODERN SPECIES	3	ablim1a (ENSCSEG00000015045)	ENSCSEG00000015079	SPTBN1 (ENSCSEG00000015085)	ENSCSEG00000015114	ENSCSEG00000015118	ENSCSEG00000015124	ENSCSEG00000015131	slc30a6 (ENSCSEG00000015148)	ENSCSEG00000015195	kif11 (ENSCSEG00000015215)	FAM53B (ENSCSEG00000015267) #16	eef1akmt2 (ENSCSEG00000015275) #17	abraxas2 (ENSCSEG00000015283) #18	zranb1b (ENSCSEG00000015297) #19	ctbp2a (ENSCSEG00000015340) #20	EDRF1 (ENSCSEG00000015382) #22	ADAM12 (ENSCSEG00000015418) #28	ENSCSEG00000015440 #29	ENSCSEG00000015449	INSYN2A (ENSCSEG00000015481) #30	ptpreb (ENSCSEG00000015501) ##35	gnrh3 (ENSCSEG00000015559)	mgmt (ENSCSEG00000015563) #36	ebf3a (ENSCSEG00000015565) #37	ppp2r2d (ENSCSEG00000015594)	bnip3 (ENSCSEG00000015609)	ADRA2A (ENSCSEG00000015615)	smndc1 (ENSCSEG00000015621)	MXI1 (ENSCSEG00000015639)	add3b (ENSCSEG00000015656)	ENSCSEG00000015700
Turbot	MODERN SPECIES	6	agt (ENSSMAG00000019554)	ENSSMAG00000019567	IKZF5 (ENSSMAG00000019608)	hmx3a (ENSSMAG00000019613)	hmx2 (ENSSMAG00000019618)	GPR26 (ENSSMAG00000019622) #9	CHST15 (ENSSMAG00000019628) #12	NKX1-2 (ENSSMAG00000019701) #14	ENSSMAG00000027214	FAM53B (ENSSMAG00000019707) #16	EEF1AKMT2 (ENSSMAG00000019714) #17	ABRAXAS2 (ENSSMAG00000034542) #18	ZRANB1 (ENSSMAG00000019731) #19	ENSSMAG00000019758	ENSSMAG00000025545	EDRF1 (ENSSMAG00000019847) #22	DHX32 (ENSSMAG00000019943) #26	ADAM12 (ENSSMAG00000019948) #28	ENSSMAG00000019973 #29	ENSSMAG00000019981	ENSSMAG00000020013	INSYN2A (ENSSMAG00000020022) #30	ENSSMAG00000020028 ##35	sGnRH (ENSSMAG00000020043)	MGMT (ENSSMAG00000020050) #36	ebf3a (ENSSMAG00000020066) #37	PPP2R2D (ENSSMAG00000020085)	bnip3 (ENSSMAG00000020100)	ENSSMAG00000020115	smndc1 (ENSSMAG00000020118)	ENSSMAG00000020129
Ovalentaria	ANCESTRAL SPECIES	18	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00940000154430.c.b #20	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Ovalentaria_B	ANCESTRAL SPECIES	7	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00730000113701	ENSGT00940000154430.c.b #20	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Pomacentridae	ANCESTRAL SPECIES	9	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00730000113701	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Pomacentridae_A	ANCESTRAL SPECIES	7	ENSGT00510000047893	ENSGT00390000012040	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000166669.a	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Amphiprion	ANCESTRAL SPECIES	13	ENSGT00510000047893	ENSGT00390000012040	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000166669.a	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Clown anemonefish	MODERN SPECIES	1743													tbc1d22a (ENSAOCG00000016063)	cerk (ENSAOCG00000016077)	GRAMD4 (ENSAOCG00000016183)	EDRF1 (ENSAOCG00000016300) #22	DHX32 (ENSAOCG00000016349) #26
Orange clownfish	MODERN SPECIES	12	pgbd5 (ENSAPEG00000006722)	cog2 (ENSAPEG00000006760)	agt (ENSAPEG00000006797)	ENSAPEG00000006828	ikzf5 (ENSAPEG00000006886)	hmx3a (ENSAPEG00000006942)	hmx2 (ENSAPEG00000006981)	GPR26 (ENSAPEG00000006996) #9	CHST15 (ENSAPEG00000007016) #12	nkx1.2la (ENSAPEG00000007027) #14	FAM53B (ENSAPEG00000007071) #16	eef1akmt2 (ENSAPEG00000007081) #17	abraxas2 (ENSAPEG00000007096) #18	zranb1b (ENSAPEG00000007138) #19	ENSAPEG00000007210	EDRF1 (ENSAPEG00000007285) #22	DHX32 (ENSAPEG00000007387) #26	ADAM12 (ENSAPEG00000007403) #28	ENSAPEG00000007480	ENSAPEG00000007489	INSYN2A (ENSAPEG00000007509) #30	ptpreb (ENSAPEG00000007529) ##35	gnrh3 (ENSAPEG00000007592)	mgmt (ENSAPEG00000007606) #36	ebf3a (ENSAPEG00000007624) #37	ppp2r2d (ENSAPEG00000007679)	bnip3 (ENSAPEG00000007717)	ADRA2A (ENSAPEG00000007744)	smndc1 (ENSAPEG00000007752)	ENSAPEG00000007785	add3b (ENSAPEG00000007803)
Spiny chromis	MODERN SPECIES	1427														ENSAPOG00000014462	si:ch1073-143l10.2 (ENSAPOG00000014479)	EDRF1 (ENSAPOG00000014625) #22	DHX32 (ENSAPOG00000014677) #26	ADAM12 (ENSAPOG00000014743) #28
Bicolor damselfish	MODERN SPECIES	503													ENSSPAG00000001026	tex36 (ENSSPAG00000001011)	si:ch1073-143l10.2 (ENSSPAG00000000987)	EDRF1 (ENSSPAG00000000864) #22	DHX32 (ENSSPAG00000000764) #26	ADAM12 (ENSSPAG00000000680) #28	ENSSPAG00000000659 #29	ENSSPAG00000000644	INSYN2A (ENSSPAG00000000634) #30	ptpreb (ENSSPAG00000000536) ##35	gnrh3 (ENSSPAG00000000512)	mgmt (ENSSPAG00000000502) #36	ebf3a (ENSSPAG00000000434) #37	ppp2r2d (ENSSPAG00000000393)	bnip3 (ENSSPAG00000000375)	ADRA2A (ENSSPAG00000000369)	smndc1 (ENSSPAG00000000338)	MXI1 (ENSSPAG00000000324)	add3b (ENSSPAG00000000259)
Cichlidae	ANCESTRAL SPECIES	13	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00730000113701	ENSGT00940000154430.c.b #20	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	16	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00730000113701	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Nile tilapia	MODERN SPECIES	4	ENSONIG00000040689	cog2 (ENSONIG00000000541)	agt (ENSONIG00000000537)	ENSONIG00000030151	ikzf5 (ENSONIG00000000533)	hmx3a (ENSONIG00000028016)	hmx2 (ENSONIG00000000530)	GPR26 (ENSONIG00000000528) #9	CHST15 (ENSONIG00000000527) #12	nkx1.2la (ENSONIG00000000526) #14	FAM53B (ENSONIG00000035072) #16	eef1akmt2 (ENSONIG00000000522) #17	abraxas2 (ENSONIG00000027601) #18	ZRANB1 (ENSONIG00000000515) #19	ENSONIG00000000510	EDRF1 (ENSONIG00000000507) #22	DHX32 (ENSONIG00000000506) #26	ADAM12 (ENSONIG00000000492) #28	ENSONIG00000033335 #29	ENSONIG00000000487	INSYN2A (ENSONIG00000000485) #30	ptpreb (ENSONIG00000000471) ##35	gnrh3 (ENSONIG00000041147)	MGMT (ENSONIG00000000470) #36	ebf3a (ENSONIG00000000451) #37	ppp2r2d (ENSONIG00000039942)	bnip3 (ENSONIG00000000438)	ADRA2A (ENSONIG00000020723)	ENSONIG00000039182	smndc1 (ENSONIG00000000434)	ENSONIG00000040263
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	11	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00730000113701	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b	ENSGT01030000234563.b.a.b.a.a.c.b
Haplochromini	ANCESTRAL SPECIES	10	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00730000113701	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b	ENSGT01030000234563.b.a.b.a.a.c.b
Burton s mouthbrooder	MODERN SPECIES	275	agt (ENSHBUG00000016718)	ENSHBUG00000016798	ikzf5 (ENSHBUG00000016828)	hmx3a (ENSHBUG00000016862)	hmx2 (ENSHBUG00000016870)	GPR26 (ENSHBUG00000016892) #9	CHST15 (ENSHBUG00000016919) #12	nkx1.2la (ENSHBUG00000016936) #14	FAM53B (ENSHBUG00000016941) #16	eef1akmt2 (ENSHBUG00000016969) #17	abraxas2 (ENSHBUG00000017003) #18	ZRANB1 (ENSHBUG00000017048) #19	ENSHBUG00000017157	tex36 (ENSHBUG00000017186)	si:ch1073-143l10.2 (ENSHBUG00000017191)	EDRF1 (ENSHBUG00000017302) #22	DHX32 (ENSHBUG00000017313) #26	ADAM12 (ENSHBUG00000017329) #28	ENSHBUG00000017353	INSYN2A (ENSHBUG00000017370) #30	ptpreb (ENSHBUG00000017449) ##35	PreproGnRH (ENSHBUG00000017482)	MGMT (ENSHBUG00000017490) #36	ebf3a (ENSHBUG00000017528) #37	ppp2r2d (ENSHBUG00000017557)	bnip3 (ENSHBUG00000017572)	ADRA2A (ENSHBUG00000017578)	smndc1 (ENSHBUG00000017596)	MXI1 (ENSHBUG00000000525)	add3b (ENSHBUG00000017711)	ENSHBUG00000017730
Haplochromini_A	ANCESTRAL SPECIES	8	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00730000113701	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b	ENSGT01030000234563.b.a.b.a.a.c.b
P. nyererei	MODERN SPECIES	319	agt (ENSPNYG00000003725)	ENSPNYG00000003740	ikzf5 (ENSPNYG00000003786)	hmx3a (ENSPNYG00000003802)	hmx2 (ENSPNYG00000003823)	GPR26 (ENSPNYG00000003859) #9	CHST15 (ENSPNYG00000003888) #12	nkx1.2la (ENSPNYG00000003905) #14	FAM53B (ENSPNYG00000003921) #16	eef1akmt2 (ENSPNYG00000003960) #17	abraxas2 (ENSPNYG00000003987) #18	ZRANB1 (ENSPNYG00000004021) #19	ENSPNYG00000004075	tex36 (ENSPNYG00000004102)	si:ch1073-143l10.2 (ENSPNYG00000004120)	EDRF1 (ENSPNYG00000004153) #22	DHX32 (ENSPNYG00000004257) #26	ADAM12 (ENSPNYG00000004320) #28	ENSPNYG00000004398	INSYN2A (ENSPNYG00000004446) #30	ptpreb (ENSPNYG00000004467) ##35	gnrh3 (ENSPNYG00000004515)	MGMT (ENSPNYG00000004664) #36	ebf3a (ENSPNYG00000004682) #37	ppp2r2d (ENSPNYG00000004735)	bnip3 (ENSPNYG00000004777)	ADRA2A (ENSPNYG00000004800)	ENSPNYG00000004821	add3b (ENSPNYG00000004921)	ENSPNYG00000005026	ENSPNYG00000005443
Haplochromini_B	ANCESTRAL SPECIES	5	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00730000113701	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b	ENSGT01030000234563.b.a.b.a.a.c.b
Zebra mbuna	MODERN SPECIES	1095	agt (ENSMZEG00005027446)	ENSMZEG00005027447	ikzf5 (ENSMZEG00005027448)	hmx3a (ENSMZEG00005027449)	hmx2 (ENSMZEG00005027450)	GPR26 (ENSMZEG00005027451) #9	CHST15 (ENSMZEG00005027452) #12	nkx1.2la (ENSMZEG00005027453) #14	FAM53B (ENSMZEG00005027454) #16	eef1akmt2 (ENSMZEG00005027455) #17	abraxas2 (ENSMZEG00005027456) #18	ZRANB1 (ENSMZEG00005027460) #19	ENSMZEG00005027463	tex36 (ENSMZEG00005027465)	si:ch1073-143l10.2 (ENSMZEG00005027466)	EDRF1 (ENSMZEG00005027468) #22	DHX32 (ENSMZEG00005027474) #26	ADAM12 (ENSMZEG00005027476) #28	ENSMZEG00005027478	ENSMZEG00005027479	INSYN2A (ENSMZEG00005027481) #30	ptpreb (ENSMZEG00005027483) ##35	gnrh3 (ENSMZEG00005027490)	MGMT (ENSMZEG00005027499) #36	ebf3a (ENSMZEG00005027501) #37	ppp2r2d (ENSMZEG00005027504)	bnip3 (ENSMZEG00005027506)	ADRA2A (ENSMZEG00005027507)	ENSMZEG00005027508	smndc1 (ENSMZEG00005027510)	ENSMZEG00005027512
Eastern happy	MODERN SPECIES	4	hmx2 (ENSACLG00000017580)	GPR26 (ENSACLG00000017565) #9	CHST15 (ENSACLG00000017549) #12	nkx1.2la (ENSACLG00000017537) #14	FAM53B (ENSACLG00000017529) #16	eef1akmt2 (ENSACLG00000017498) #17	abraxas2 (ENSACLG00000017454) #18	ZRANB1 (ENSACLG00000017385) #19	ENSACLG00000017270	tex36 (ENSACLG00000017245)	ENSACLG00000017241	si:ch1073-143l10.2 (ENSACLG00000017224)	DHX32 (ENSACLG00000017177) #26	ADAM12 (ENSACLG00000017084) #28	ENSACLG00000017045	EDRF1 (ENSACLG00000016840) #22	INSYN2A (ENSACLG00000016808) #30	ptpreb (ENSACLG00000016674) ##35	ENSACLG00000016797	MGMT (ENSACLG00000016655) #36	ebf3a (ENSACLG00000016534) #37	ppp2r2d (ENSACLG00000016449)	bnip3 (ENSACLG00000016400)	ADRA2A (ENSACLG00000016393)	smndc1 (ENSACLG00000016360)	MXI1 (ENSACLG00000016347)	add3b (ENSACLG00000016265)	ENSACLG00000016194	ENSACLG00000016080	ENSACLG00000016051	ENSACLG00000015999
Lyretail cichlid	MODERN SPECIES	295	agt (ENSNBRG00000015961)	ENSNBRG00000015973	ikzf5 (ENSNBRG00000015990)	hmx3a (ENSNBRG00000016010)	hmx2 (ENSNBRG00000016033)	GPR26 (ENSNBRG00000016048) #9	CHST15 (ENSNBRG00000016068) #12	nkx1.2la (ENSNBRG00000016130) #14	FAM53B (ENSNBRG00000016144) #16	eef1akmt2 (ENSNBRG00000016151) #17	abraxas2 (ENSNBRG00000016174) #18	ZRANB1 (ENSNBRG00000016218) #19	ENSNBRG00000016260	tex36 (ENSNBRG00000016287)	si:ch1073-143l10.2 (ENSNBRG00000016302)	EDRF1 (ENSNBRG00000016329) #22	DHX32 (ENSNBRG00000016396) #26	ADAM12 (ENSNBRG00000016478) #28	ENSNBRG00000016561	INSYN2A (ENSNBRG00000016598) #30	ptpreb (ENSNBRG00000016627) ##35	ENSNBRG00000016708	MGMT (ENSNBRG00000016969) #36	ebf3a (ENSNBRG00000016990) #37	ppp2r2d (ENSNBRG00000017033)	bnip3 (ENSNBRG00000017061)	ADRA2A (ENSNBRG00000017081)	smndc1 (ENSNBRG00000017089)	ENSNBRG00000017109	add3b (ENSNBRG00000017141)	ENSNBRG00000017200
Midas cichlid	MODERN SPECIES	230	pgbd5 (ENSACIG00000005886)	cog2 (ENSACIG00000005711)	agt (ENSACIG00000005686)	ENSACIG00000005644	ikzf5 (ENSACIG00000005632)	hmx3a (ENSACIG00000005600)	hmx2 (ENSACIG00000005580)	GPR26 (ENSACIG00000005571) #9	CHST15 (ENSACIG00000005529) #12	nkx1.2la (ENSACIG00000005515) #14	FAM53B (ENSACIG00000005500) #16	eef1akmt2 (ENSACIG00000005482) #17	abraxas2 (ENSACIG00000005458) #18	zranb1b (ENSACIG00000005436) #19	ctbp2a (ENSACIG00000005409) #20	EDRF1 (ENSACIG00000005350) #22	DHX32 (ENSACIG00000005306) #26	ADAM12 (ENSACIG00000005251) #28	ENSACIG00000005235	INSYN2A (ENSACIG00000005220) #30	ptpreb (ENSACIG00000005183) ##35	ENSACIG00000004931	mgmt (ENSACIG00000004917) #36	ebf3a (ENSACIG00000004875) #37	ppp2r2d (ENSACIG00000004849)	bnip3 (ENSACIG00000004835)	ADRA2A (ENSACIG00000004832)	smndc1 (ENSACIG00000004819)	MXI1 (ENSACIG00000004774)	add3b (ENSACIG00000004743)	ENSACIG00000004687
Atherinomorphae	ANCESTRAL SPECIES	16	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00940000154430.c.b #20	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Cyprinodontiformes	ANCESTRAL SPECIES	17	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00940000154430.c.b #20	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Aplocheiloidei	ANCESTRAL SPECIES	22	ENSGT00390000012040	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000166669.a	ENSGT00940000175884	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Mangrove rivulus	MODERN SPECIES	3	agt (ENSKMAG00000020960)	cog2 (ENSKMAG00000020925)	ENSKMAG00000020869	ikzf5 (ENSKMAG00000020842)	hmx3a (ENSKMAG00000020830)	hmx2 (ENSKMAG00000020827)	GPR26 (ENSKMAG00000020816) #9	CHST15 (ENSKMAG00000020803) #12	nkx1.2la (ENSKMAG00000020796) #14	FAM53B (ENSKMAG00000020791) #16	eef1akmt2 (ENSKMAG00000020780) #17	abraxas2 (ENSKMAG00000020748) #18	zranb1b (ENSKMAG00000020697) #19	ENSKMAG00000020633	tex36 (ENSKMAG00000020590)	EDRF1 (ENSKMAG00000020507) #22	DHX32 (ENSKMAG00000020436) #26	ADAM12 (ENSKMAG00000020371) #28	ENSKMAG00000020337 #29	ENSKMAG00000020311	INSYN2A (ENSKMAG00000020299) #30	ptpreb (ENSKMAG00000020283) ##35	gnrh3 (ENSKMAG00000020272)	mgmt (ENSKMAG00000020237) #36	ebf3a (ENSKMAG00000020208) #37	ppp2r2d (ENSKMAG00000020182)	bnip3 (ENSKMAG00000020164)	ENSKMAG00000020150	smndc1 (ENSKMAG00000020134)	MXI1 (ENSKMAG00000020122)	add3b (ENSKMAG00000020087)
Turquoise killifish	MODERN SPECIES	1612	agt (ENSNFUG00015024877)	ENSNFUG00015024882	ikzf5 (ENSNFUG00015024884)	ENSNFUG00015024885	HMX3 (ENSNFUG00015024886)	HMX2 (ENSNFUG00015024889)	GPR26 (ENSNFUG00015024890) #9	ENSNFUG00015024891	CHST15 (ENSNFUG00015024893) #12	nkx1.2la (ENSNFUG00015024895) #14	FAM53B (ENSNFUG00015024896) #16	METTL10 (ENSNFUG00015024898) #17	abraxas2 (ENSNFUG00015024899) #18	ZRANB1 (ENSNFUG00015024903) #19	ENSNFUG00015024925	EDRF1 (ENSNFUG00015005837) #22	DHX32 (ENSNFUG00015005945) #26	ADAM12 (ENSNFUG00015006044) #28	ENSNFUG00015006121	IDO1 (ENSNFUG00015006125)	FAM196A (ENSNFUG00015006144) #30	ptpreb (ENSNFUG00015006301) ##35	ENSNFUG00015007359	MGMT (ENSNFUG00015007365) #36	EBF3 (ENSNFUG00015007404) #37	ppp2r2d (ENSNFUG00015007580)	BNIP4 (ENSNFUG00015007839)	NEURL (ENSNFUG00015007846)	SORCS1 (ENSNFUG00015007967)	SORCS3 (ENSNFUG00015009165)	ENSNFUG00015011342
Cyprinodontoidei	ANCESTRAL SPECIES	14	ENSGT00940000165627.a.a	ENSGT00390000012040	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000166669.a	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Poeciliinae	ANCESTRAL SPECIES	16	ENSGT00390000012040	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000154430.c.b #20	ENSGT00940000166669.a	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Poecilia	ANCESTRAL SPECIES	11	ENSGT00390000012040	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000154430.c.b #20	ENSGT00940000166669.a	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
NAME_6	ANCESTRAL SPECIES	34	ENSGT00390000012040	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000154430.c.b #20	ENSGT00940000166669.a	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Sailfin molly	MODERN SPECIES	359																EDRF1 (ENSPLAG00000011203) #22	DHX32 (ENSPLAG00000011229) #26	ADAM12 (ENSPLAG00000011295) #28	ENSPLAG00000011306	INSYN2A (ENSPLAG00000011325) #30	ENSPLAG00000011344 ##35
Amazon molly	MODERN SPECIES	264	cog2 (ENSPFOG00000017961)	agt (ENSPFOG00000017935)	ENSPFOG00000017921	ikzf5 (ENSPFOG00000017916)	hmx3a (ENSPFOG00000017915)	hmx2 (ENSPFOG00000017912)	GPR26 (ENSPFOG00000017907) #9	CHST15 (ENSPFOG00000017890) #12	nkx1.2la (ENSPFOG00000017884) #14	FAM53B (ENSPFOG00000017873) #16	eef1akmt2 (ENSPFOG00000017870) #17	abraxas2 (ENSPFOG00000017841) #18	zranb1b (ENSPFOG00000017835) #19	ENSPFOG00000023871	ctbp2a (ENSPFOG00000017800) #20	EDRF1 (ENSPFOG00000017678) #22	DHX32 (ENSPFOG00000017636) #26	ADAM12 (ENSPFOG00000017518) #28	ENSPFOG00000017511 #29	ENSPFOG00000017475	INSYN2A (ENSPFOG00000017465) #30	ptpreb (ENSPFOG00000017323) ##35	gnrh3 (ENSPFOG00000017305)	mgmt (ENSPFOG00000017298) #36	ebf3a (ENSPFOG00000017183) #37	ppp2r2d (ENSPFOG00000017131)	bnip3 (ENSPFOG00000017122)	ADRA2A (ENSPFOG00000020919)	smndc1 (ENSPFOG00000017113)	MXI1 (ENSPFOG00000017086)	add3b (ENSPFOG00000016965)
Guppy	MODERN SPECIES	445	ENSPREG00000011292	cog2 (ENSPREG00000011315)	agt (ENSPREG00000011360)	ENSPREG00000011373	ikzf5 (ENSPREG00000011382)	hmx3a (ENSPREG00000011391)	hmx2 (ENSPREG00000011399)	GPR26 (ENSPREG00000011418) #9	CHST15 (ENSPREG00000011433) #12	nkx1.2la (ENSPREG00000011441) #14	FAM53B (ENSPREG00000011454) #16	eef1akmt2 (ENSPREG00000011465) #17	abraxas2 (ENSPREG00000011492) #18	zranb1b (ENSPREG00000011524) #19	ENSPREG00000011568	EDRF1 (ENSPREG00000011628) #22	DHX32 (ENSPREG00000011733) #26	ADAM12 (ENSPREG00000011754) #28	ENSPREG00000011783 #29	ENSPREG00000011795	INSYN2A (ENSPREG00000011813) #30	ptpreb (ENSPREG00000011843) ##35	gnrh3 (ENSPREG00000011902)	mgmt (ENSPREG00000012155) #36	ebf3a (ENSPREG00000012168) #37	ppp2r2d (ENSPREG00000012209)	bnip3 (ENSPREG00000012252)	ADRA2A (ENSPREG00000012269)	smndc1 (ENSPREG00000012279)	MXI1 (ENSPREG00000012294)	add3b (ENSPREG00000012320)
Platyfish	MODERN SPECIES	14	ENSXMAG00000018266	cog2 (ENSXMAG00000018269)	agt (ENSXMAG00000025686)	ENSXMAG00000002895	ikzf5 (ENSXMAG00000018311)	hmx3a (ENSXMAG00000027461)	hmx2 (ENSXMAG00000022619)	GPR26 (ENSXMAG00000012524) #9	CHST15 (ENSXMAG00000012526) #12	NKX1-2 (ENSXMAG00000019481) #14	FAM53B (ENSXMAG00000029687) #16	eef1akmt2 (ENSXMAG00000012537) #17	abraxas2 (ENSXMAG00000021481) #18	zranb1b (ENSXMAG00000012557) #19	ENSXMAG00000020904	EDRF1 (ENSXMAG00000012589) #22	DHX32 (ENSXMAG00000012613) #26	ADAM12 (ENSXMAG00000012632) #28	ENSXMAG00000023066 #29	ENSXMAG00000012648	INSYN2A (ENSXMAG00000012672) #30	ptpreb (ENSXMAG00000012673) ##35	gnrh3 (ENSXMAG00000012710)	ebf3a (ENSXMAG00000012715) #37	mgmt (ENSXMAG00000012712) #36	ppp2r2d (ENSXMAG00000012743)	bnip3 (ENSXMAG00000012753)	ADRA2A (ENSXMAG00000019483)	smndc1 (ENSXMAG00000012755)	MXI1 (ENSXMAG00000012758)	add3b (ENSXMAG00000012762)
NAME_4	ANCESTRAL SPECIES	2	ENSGT00940000165627.a.a	ENSGT00390000012040	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000166669.a	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b.d
Mummichog	MODERN SPECIES	2208	cog2 (ENSFHEG00000021340)	agt (ENSFHEG00000021275)	ENSFHEG00000021256	ikzf5 (ENSFHEG00000021231)	hmx3a (ENSFHEG00000021207)	hmx2 (ENSFHEG00000021199)	GPR26 (ENSFHEG00000021178) #9	CHST15 (ENSFHEG00000000522) #12	nkx1.2la (ENSFHEG00000021139) #14	ENSFHEG00000021128	FAM53B (ENSFHEG00000021122) #16	eef1akmt2 (ENSFHEG00000021112) #17	abraxas2 (ENSFHEG00000021091) #18	zranb1b (ENSFHEG00000021079) #19	ENSFHEG00000021013	EDRF1 (ENSFHEG00000020906) #22	DHX32 (ENSFHEG00000020715) #26	ENSFHEG00000020596 #28	ENSFHEG00000020564 #29	ENSFHEG00000020554	INSYN2A (ENSFHEG00000000512) #30	ptpreb (ENSFHEG00000020467) ##35	ENSFHEG00000020405	mgmt (ENSFHEG00000020384) #36	ebf3a (ENSFHEG00000020374) #37	ppp2r2d (ENSFHEG00000020279)	bnip3 (ENSFHEG00000020214)	ADRA2A (ENSFHEG00000020159)	smndc1 (ENSFHEG00000020150)	ENSFHEG00000020126	add3b (ENSFHEG00000020058)
Sheepshead minnow	MODERN SPECIES	544																EDRF1 (ENSCVAG00000000517) #22	DHX32 (ENSCVAG00000020077) #26	ADAM12 (ENSCVAG00000020135) #28	ENSCVAG00000020172	INSYN2A (ENSCVAG00000020187) #30	ptpreb (ENSCVAG00000020251) ##35	gnrh3 (ENSCVAG00000020258)	mgmt (ENSCVAG00000020266) #36	ebf3a (ENSCVAG00000020362) #37	ppp2r2d (ENSCVAG00000020392)	bnip3 (ENSCVAG00000020401)	ADRA2A (ENSCVAG00000020410)	smndc1 (ENSCVAG00000020432)	MXI1 (ENSCVAG00000020440)	add3b (ENSCVAG00000020511)
Oryzias	ANCESTRAL SPECIES	6	ENSGT00390000012040	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000154430.c.b #20	ENSGT00940000166669.a	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Oryzias_b	ANCESTRAL SPECIES	7	ENSGT00510000047893	ENSGT00390000012040	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000166669.a	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Javanese ricefish	MODERN SPECIES	6	cog2 (ENSOJAG00000009569)	agt (ENSOJAG00000009685)	ENSOJAG00000009710	ikzf5 (ENSOJAG00000009826)	ENSOJAG00000009836	hmx3a (ENSOJAG00000009855)	hmx2 (ENSOJAG00000009876)	GPR26 (ENSOJAG00000009898) #9	CHST15 (ENSOJAG00000009911) #12	nkx1.2la (ENSOJAG00000009937) #14	FAM53B (ENSOJAG00000009959) #16	eef1akmt2 (ENSOJAG00000009995) #17	abraxas2 (ENSOJAG00000010009) #18	zranb1b (ENSOJAG00000010040) #19	ENSOJAG00000010318	EDRF1 (ENSOJAG00000010764) #22	DHX32 (ENSOJAG00000012119) #26	ENSOJAG00000012173	ADAM12 (ENSOJAG00000012298) #28	ENSOJAG00000013398 #29	ENSOJAG00000013404	INSYN2A (ENSOJAG00000013422) #30	ptpreb (ENSOJAG00000013576) ##35	ENSOJAG00000015389	MGMT (ENSOJAG00000015424) #36	ebf3a (ENSOJAG00000015483) #37	ppp2r2d (ENSOJAG00000015857)	bnip3 (ENSOJAG00000016235)	ADRA2A (ENSOJAG00000016250)	smndc1 (ENSOJAG00000016276)	MXI1 (ENSOJAG00000016289)
Indian medaka	MODERN SPECIES	27	ENSOMEG00000008974	ENSOMEG00000008949	ENSOMEG00000008914	ikzf5 (ENSOMEG00000008864)	ENSOMEG00000008850	hmx3a (ENSOMEG00000008823)	hmx2 (ENSOMEG00000008815)	GPR26 (ENSOMEG00000008789) #9	CHST15 (ENSOMEG00000008758) #12	nkx1.2la (ENSOMEG00000008699) #14	FAM53B (ENSOMEG00000008668) #16	eef1akmt2 (ENSOMEG00000008648) #17	abraxas2 (ENSOMEG00000008608) #18	zranb1b (ENSOMEG00000000652) #19	ENSOMEG00000008468	EDRF1 (ENSOMEG00000008343) #22	DHX32 (ENSOMEG00000008273) #26	ADAM12 (ENSOMEG00000008244) #28	ENSOMEG00000008203 #29	ENSOMEG00000008173	INSYN2A (ENSOMEG00000000199) #30	ptpreb (ENSOMEG00000008113) ##35	ENSOMEG00000008001	MGMT (ENSOMEG00000007760) #36	ebf3a (ENSOMEG00000007721) #37	ppp2r2d (ENSOMEG00000007643)	bnip3 (ENSOMEG00000007623)	ADRA2A (ENSOMEG00000007601)	smndc1 (ENSOMEG00000007590)	ENSOMEG00000007548	add3b (ENSOMEG00000007497)
Oryzias_a	ANCESTRAL SPECIES	4	ENSGT00510000047893	ENSGT00390000012040	ENSGT00890000139531	ENSGT00940000165331	ENSGT00940000155035.n.a	ENSGT00940000158286.e.a	ENSGT00940000160392	ENSGT00950000183001.a.a.d.b #9	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a #18	ENSGT00940000158045.b #19	ENSGT00940000154430.c.b #20	ENSGT00390000014797 #22	ENSGT00940000157227.h #26	ENSGT00940000155495.C.a.b #28	ENSGT00940000153123.C.a #29	ENSGT00940000164380.b	ENSGT00530000063787.B.d.b #30	ENSGT00940000156570.b ##35	ENSGT00390000009274	ENSGT00390000015799 #36	ENSGT00950000182859.A.b #37	ENSGT00950000182864.a.a	ENSGT00390000013415.a.a	ENSGT00940000161451.a.b	ENSGT00940000153352.B	ENSGT00940000155809.p	ENSGT00940000155257.b.b
Japanese Medaka HdrR	MODERN SPECIES	6	cog2 (ENSORLG00000005545)	agt (ENSORLG00000005554)	ENSORLG00000005563	ikzf5 (ENSORLG00000005569)	hmx3a (ENSORLG00000027287)	hmx2 (ENSORLG00000005586)	GPR26 (ENSORLG00000005595) #9	CHST15 (ENSORLG00000005610) #12	nkx1.2la (ENSORLG00000005612) #14	ENSORLG00000028088	FAM53B (ENSORLG00000005619) #16	eef1akmt2 (ENSORLG00000005635) #17	abraxas2 (ENSORLG00000005647) #18	zranb1b (ENSORLG00000005663) #19	CTBP2 (ENSORLG00000005671) #20	EDRF1 (ENSORLG00000005690) #22	DHX32 (ENSORLG00000005725) #26	ADAM12 (ENSORLG00000005739) #28	ENSORLG00000024313 #29	ENSORLG00000005762	INSYN2A (ENSORLG00000005765) #30	ptpe (ENSORLG00000005810) ##35	gnrh3 (ENSORLG00000005824)	mgmt (ENSORLG00000022656) #36	ebf3a (ENSORLG00000005870) #37	ppp2r2d (ENSORLG00000005885)	bnip3 (ENSORLG00000005914)	ENSORLG00000030653	ENSORLG00000005919	smndc1 (ENSORLG00000005934)	MXI1 (ENSORLG00000005955)
Chinese medaka	MODERN SPECIES	182	pgbd5 (ENSOSIG00000019746)	cog2 (ENSOSIG00000019418)	agt (ENSOSIG00000019406)	ENSOSIG00000019400	ikzf5 (ENSOSIG00000019398)	hmx3a (ENSOSIG00000019394)	hmx2 (ENSOSIG00000019392)	GPR26 (ENSOSIG00000019391) #9	CHST15 (ENSOSIG00000019389) #12	nkx1.2la (ENSOSIG00000019386) #14	FAM53B (ENSOSIG00000019385) #16	eef1akmt2 (ENSOSIG00000019384) #17	abraxas2 (ENSOSIG00000019380) #18	zranb1b (ENSOSIG00000019359) #19	ENSOSIG00000019321	EDRF1 (ENSOSIG00000019029) #22	DHX32 (ENSOSIG00000018956) #26	ADAM12 (ENSOSIG00000017339) #28	ENSOSIG00000017294 #29	ENSOSIG00000017286	INSYN2A (ENSOSIG00000017285) #30
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	MODERN SPECIES	512	ENSHCOG00000016628	agt (ENSHCOG00000016618)	ENSHCOG00000016599	ENSHCOG00000016586	hmx3a (ENSHCOG00000016577)	hmx2 (ENSHCOG00000016574)	GPR26 (ENSHCOG00000016561) #9	CHST15 (ENSHCOG00000016549) #12	nkx1.2la (ENSHCOG00000016527) #14	FAM53B (ENSHCOG00000016518) #16	eef1akmt2 (ENSHCOG00000016501) #17	abraxas2 (ENSHCOG00000016490) #18	ZRANB1 (ENSHCOG00000016466) #19	ENSHCOG00000016434	ENSHCOG00000016390 #22	EDRF1 (ENSHCOG00000016375) #22	ENSHCOG00000016342 #28	INSYN2A (ENSHCOG00000016298) #30	ptpreb (ENSHCOG00000016250) ##35	ENSHCOG00000015887	MGMT (ENSHCOG00000015878) #36	ebf3a (ENSHCOG00000015863) #37	ppp2r2d (ENSHCOG00000015851)	bnip3 (ENSHCOG00000015833)	ADRA2A (ENSHCOG00000015819)	smndc1 (ENSHCOG00000000783)	ENSHCOG00000015794	add3b (ENSHCOG00000015759)	ENSHCOG00000015365	ENSHCOG00000015346	ENSHCOG00000000600
Tiger tail seahorse	MODERN SPECIES	512	MAP3K21 (ENSHCOG00000016633)	ENSHCOG00000016628	agt (ENSHCOG00000016618)	ENSHCOG00000016599	ENSHCOG00000016586	hmx3a (ENSHCOG00000016577)	hmx2 (ENSHCOG00000016574)	GPR26 (ENSHCOG00000016561) #9	CHST15 (ENSHCOG00000016549) #12	nkx1.2la (ENSHCOG00000016527) #14	FAM53B (ENSHCOG00000016518) #16	eef1akmt2 (ENSHCOG00000016501) #17	abraxas2 (ENSHCOG00000016490) #18	ZRANB1 (ENSHCOG00000016466) #19	ENSHCOG00000016434	ENSHCOG00000016390 #22	EDRF1 (ENSHCOG00000016375) #22	ENSHCOG00000016342 #28	INSYN2A (ENSHCOG00000016298) #30	ptpreb (ENSHCOG00000016250) ##35	ENSHCOG00000015887	MGMT (ENSHCOG00000015878) #36	ebf3a (ENSHCOG00000015863) #37	ppp2r2d (ENSHCOG00000015851)	bnip3 (ENSHCOG00000015833)	ADRA2A (ENSHCOG00000015819)	smndc1 (ENSHCOG00000000783)	ENSHCOG00000015794	add3b (ENSHCOG00000015759)	ENSHCOG00000015365	ENSHCOG00000015346
Otomorpha	ANCESTRAL SPECIES	702														ENSGT00940000154430.c.b #20	ENSGT00940000175884	ENSGT00390000014797 #22
Otophysi	ANCESTRAL SPECIES	21														ENSGT00940000154430.c.b #20	ENSGT00940000175884	ENSGT00390000014797 #22	ENSGT00940000160188	ENSGT00510000050935	ENSGT01020000230346.C.q.b	ENSGT00940000158045.b #19	ENSGT00810000125473.B	ENSGT00940000158051	ENSGT00940000158745	ENSGT00940000155704	ENSGT00940000157388.b.b	ENSGT00530000064271	ENSGT00390000003866.a.a.f	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00940000154940	ENSGT00950000183000.c.b
Characiphysae	ANCESTRAL SPECIES	4	ENSGT00530000063596.B	ENSGT00940000158846	ENSGT00940000156005	ENSGT00390000014318	ENSGT00940000159112.a	ENSGT00390000003316.c.b.b.b	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655.a	ENSGT00510000048283.d	ENSGT00940000176979	ENSGT00940000159075.C	ENSGT00390000001610.d.h.a	ENSGT00940000156593.pc.a	ENSGT00940000157135	ENSGT00940000175884	ENSGT00390000014797 #22	ENSGT00940000160188	ENSGT00510000050935.c	ENSGT01020000230346.C.q.b	ENSGT00940000158045.b #19	ENSGT00810000125473.B	ENSGT00940000158051	ENSGT00940000158745	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00940000154940	ENSGT00950000183000.c.b	ENSGT00940000158135	ENSGT00390000012799	ENSGT00550000074824	ENSGT00390000006916.d.b
Channel catfish	MODERN SPECIES	28	numb (ENSIPUG00000000525)	exd2 (ENSIPUG00000000560)	ENSIPUG00000000575	ENSIPUG00000000584	ERH (ENSIPUG00000000598)	ubr1 (ENSIPUG00000000615)	ENSIPUG00000000642	tmem179 (ENSIPUG00000000666)	ENSIPUG00000000674	KIF26A (ENSIPUG00000000684)	aspg (ENSIPUG00000000734)	ENSIPUG00000000807	VCPKMT (ENSIPUG00000000816)	tex36 (ENSIPUG00000000825)	CKB (ENSIPUG00000000834)	edrf1 (ENSIPUG00000000846) #22	tonsl (ENSIPUG00000000901)	ENSIPUG00000000912	ENSIPUG00000000924	ENSIPUG00000000937	ENSIPUG00000000939	Psmc1 (ENSIPUG00000000956)	zranb1b (ENSIPUG00000000984) #19	AKAP6 (ENSIPUG00000001037)	npas3 (ENSIPUG00000001060)	egln3 (ENSIPUG00000001099)	sptssa (ENSIPUG00000001121)	eapp (ENSIPUG00000001140)	SNX6 (ENSIPUG00000001204)	CFL2 (ENSIPUG00000001293)	baz1a (ENSIPUG00000001305)
Characiphysae_b	ANCESTRAL SPECIES	13	ENSGT00530000063596.B	ENSGT00940000158846	ENSGT00940000156005	ENSGT00390000014318	ENSGT00940000159112.a	ENSGT00390000003316.c.b.b.b	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655.a	ENSGT00510000048283.d	ENSGT00940000176979	ENSGT00940000159075.C	ENSGT00390000001610.d.h.a	ENSGT00940000156593.pc.a	ENSGT00940000157135	ENSGT00940000175884	ENSGT00390000014797 #22	ENSGT00940000160188	ENSGT00510000050935.c.a	ENSGT00510000050935.d	ENSGT01020000230346.C.q.b	ENSGT00940000158045.b #19	ENSGT00810000125473.B	ENSGT00940000158051	ENSGT00940000158745	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00940000154940	ENSGT00950000183000.c.b	ENSGT00940000158135	ENSGT00390000012799	ENSGT00550000074824
Characoidei	ANCESTRAL SPECIES	57	ENSGT00530000063596.B	ENSGT00940000158846	ENSGT00940000156005	ENSGT00390000014318	ENSGT00940000159112.a	ENSGT00390000003316.c.b.b.b	ENSGT00950000183075.a.a.a.b	ENSGT00940000163655.a	ENSGT00510000048283.d	ENSGT00940000176979	ENSGT00940000159075.C	ENSGT00390000001610.d.h.a	ENSGT00940000156593.pc.a	ENSGT00940000157135	ENSGT00940000175884	ENSGT00390000014797 #22	ENSGT00940000160188	ENSGT00510000050935.c.a	ENSGT00510000050935.d	ENSGT01020000230346.C.q.b	ENSGT00940000158045.b #19	ENSGT00810000125473.B	ENSGT00940000158051	ENSGT00940000158745	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00940000154940	ENSGT00950000183000.c.b	ENSGT00940000166431	ENSGT00390000012799	ENSGT00550000074824
Red-bellied piranha	MODERN SPECIES	64	GALNT16 (ENSPNAG00000009570)	numb (ENSPNAG00000009531)	exd2 (ENSPNAG00000009476)	ENSPNAG00000009461	ERH (ENSPNAG00000009441)	ENSPNAG00000009410	UBR1 (ENSPNAG00000009375)	ENSPNAG00000009244	TMEM179 (ENSPNAG00000009231)	ENSPNAG00000009221	KIF26A (ENSPNAG00000009185)	aspg (ENSPNAG00000001296)	arf6b (ENSPNAG00000008989)	vcpkmt (ENSPNAG00000001259)	tex36 (ENSPNAG00000008934)	EDRF1 (ENSPNAG00000008907) #22	tonsl (ENSPNAG00000008839)	ENSPNAG00000008764	ENSPNAG00000008758	ENSPNAG00000001179	ENSPNAG00000008747	psmc1a (ENSPNAG00000008732)	zranb1b (ENSPNAG00000008717) #19	AKAP6 (ENSPNAG00000001159)	NPAS3 (ENSPNAG00000008664)	egln3 (ENSPNAG00000008631)	sptssa (ENSPNAG00000001126)	eapp (ENSPNAG00000008614)	snx6 (ENSPNAG00000008607)	cfl2 (ENSPNAG00000005324)	ENSPNAG00000005544
Mexicana tetra	MODERN SPECIES	24	GALNT16 (ENSAMXG00000038639)	numb (ENSAMXG00000008219)	exd2 (ENSAMXG00000043700)	ENSAMXG00000008202	ERH (ENSAMXG00000043841)	UBR1 (ENSAMXG00000008188)	ENSAMXG00000008176	TMEM179 (ENSAMXG00000008152)	ENSAMXG00000042330	ENSAMXG00000029598	KIF26A (ENSAMXG00000008141)	aspg (ENSAMXG00000008130)	arf6b (ENSAMXG00000025904)	vcpkmt (ENSAMXG00000008118)	tex36 (ENSAMXG00000038344)	ENSAMXG00000031618 #22	tonsl (ENSAMXG00000008066)	ENSAMXG00000042375	ENSAMXG00000008038	psmc1a (ENSAMXG00000008023)	zranb1b (ENSAMXG00000008009) #19	ENSAMXG00000007996	NPAS3 (ENSAMXG00000007972)	egln3 (ENSAMXG00000002702)	sptssa (ENSAMXG00000039032)	eapp (ENSAMXG00000032957)	snx6 (ENSAMXG00000002762)	cfl2 (ENSAMXG00000038329)	ENSAMXG00000002816	zgc:109986 (ENSAMXG00000002860)	srp54 (ENSAMXG00000032669)
Electric eel	MODERN SPECIES	41	add3b (ENSEEEG00000021418)	ENSEEEG00000021405	ENSEEEG00000021402	ENSEEEG00000021400	samd8 (ENSEEEG00000021397)	ENSEEEG00000021396	UBR1 (ENSEEEG00000021226)	ENSEEEG00000021192	ENSEEEG00000021191	TMEM179 (ENSEEEG00000021189)	ENSEEEG00000021186	KIF26A (ENSEEEG00000021162)	aspg (ENSEEEG00000021154)	arf6b (ENSEEEG00000021151)	vcpkmt (ENSEEEG00000021150)	EDRF1 (ENSEEEG00000021088) #22	tonsl (ENSEEEG00000021045)	ENSEEEG00000021035	ENSEEEG00000021034	ENSEEEG00000021033	psmc1a (ENSEEEG00000020993)	zranb1b (ENSEEEG00000020973) #19	ENSEEEG00000020970
Cyprinoidei	ANCESTRAL SPECIES	24	ENSGT00940000158401.h	ENSGT00390000013337	ENSGT00390000012924.a	ENSGT00940000154481.a.a	ENSGT00390000011642.f	ENSGT00940000155913.c	ENSGT00940000156674	ENSGT00940000156509	ENSGT00390000010056.a	ENSGT01030000234517.H.b.l	ENSGT00940000156491.a.c	ENSGT00390000004700.b	ENSGT00940000171352	ENSGT00940000154430.c.b #20	ENSGT00940000175884	ENSGT00390000014797 #22	ENSGT00940000160188	ENSGT00510000050935.a	ENSGT00510000050935.b	ENSGT01020000230346.C.q.b	ENSGT00940000158045.b #19	ENSGT00810000125473.B	ENSGT00940000158051	ENSGT00940000158745	ENSGT00940000155704	ENSGT00940000157388.b.b	ENSGT00940000170208	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00940000154940	ENSGT00950000183000.c.b
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES																	ENSGT00390000014797.k.a #22
Goldfish	MODERN SPECIES	8	fbxo30a (ENSCARG00000062981)	stx11a (ENSCARG00000062964)	ENSCARG00000062958	rmnd1 (ENSCARG00000062793)	ENSCARG00000062776	ENSCARG00000060470	TULP4 (ENSCARG00000059874)	slc18b1 (ENSCARG00000059687)	ahi1 (ENSCARG00000059659)	ENSCARG00000059639	lft2 (ENSCARG00000059633)	ENSCARG00000040915	fzd3b (ENSCARG00000040029)	ENSCARG00000040000	ctbp2a (ENSCARG00000039685) #20	EDRF1 (ENSCARG00000039593) #22	ENSCARG00000039568	ENSCARG00000039559	ENSCARG00000039539	ENSCARG00000039532	ENSCARG00000039524	nkl.2 (ENSCARG00000039519)	nkl.2 (ENSCARG00000039502)	ENSCARG00000039498	psmc1a (ENSCARG00000039024)	zranb1b (ENSCARG00000038942) #19	AKAP6 (ENSCARG00000038897)	NPAS3 (ENSCARG00000038321)	egln3 (ENSCARG00000038218)	eapp (ENSCARG00000038191)	snx6 (ENSCARG00000036262)
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00390000014797.k.a #22
Common carp reference	MODERN SPECIES	30	ENSCCRG00000066398	zbtb2a (ENSCCRG00000067105)	rmnd1 (ENSCCRG00000008300)	CCDC170 (ENSCCRG00000008363)	ENSCCRG00000008344	ENSCCRG00000008370	ENSCCRG00000060005	slc18b1 (ENSCCRG00000001494)	ahi1 (ENSCCRG00000041268)	lft2 (ENSCCRG00000068825)	ENSCCRG00000005981	fzd3b (ENSCCRG00000029980)	ENSCCRG00000005871	ENSCCRG00000063832	tex36 (ENSCCRG00000039127)	ENSCCRG00000005827 #22	ENSCCRG00000057207	nkl.2 (ENSCCRG00000025414)	ENSCCRG00000035978	ENSCCRG00000074338	ENSCCRG00000069426	ENSCCRG00000036841	nkl.2 (ENSCCRG00000075616)	psmc1a (ENSCCRG00000025380)	zranb1b (ENSCCRG00000025422) #19	AKAP6 (ENSCCRG00000058966)	NPAS3 (ENSCCRG00000023602)	egln3 (ENSCCRG00000021591)	eapp (ENSCCRG00000066018)	snx6 (ENSCCRG00000038863)	cfl2 (ENSCCRG00000078087)
Cyprininae	ANCESTRAL SPECIES	626				ENSGT00940000154481.a.a.k.a	ENSGT00390000011642.f.b	ENSGT00940000155913.c.a	ENSGT00940000156674.i.a	ENSGT00940000156674.j	ENSGT00940000156509.j	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.b.a.b.b.b.a.b.a.a.b.b	ENSGT00390000010056.a.b	ENSGT01030000234517.H.b.l.a	ENSGT00940000156491.a.c.a.a	ENSGT00390000004700.b.c	ENSGT00940000154430.c.b #20	ENSGT00390000014797.k.b #22	ENSGT00940000160188.e	ENSGT00510000050935.a.a.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	36	ENSCARG00000019733	KLHL10 (ENSCARG00000019739)	SHPRH (ENSCARG00000019753)	fbxo30a (ENSCARG00000019797)	stx11a (ENSCARG00000019801)	zbtb2a (ENSCARG00000019804)	rmnd1 (ENSCARG00000019817)	ENSCARG00000022797	TULP4 (ENSCARG00000022820)	slc18b1 (ENSCARG00000023119)	lft2 (ENSCARG00000023312)	ENSCARG00000023967	fzd3b (ENSCARG00000043671)	ENSCARG00000043701	ctbp2a (ENSCARG00000043816) #20	EDRF1 (ENSCARG00000044779) #22	tonsl (ENSCARG00000044851)	ENSCARG00000045266	ENSCARG00000045319	ENSCARG00000045398	ENSCARG00000045411	nkl.2 (ENSCARG00000045430)	zranb1b (ENSCARG00000045457) #19	AKAP6 (ENSCARG00000045574)	hao1 (ENSCARG00000046129)	tmx4 (ENSCARG00000046176)	efcab2 (ENSCARG00000046217)	HNRNPU (ENSCARG00000046309)	ENSCARG00000047219	psma3 (ENSCARG00000047256)	ENSCARG00000047354
Goldfish	MODERN SPECIES	36	ENSCARG00000045398	ENSCARG00000045411	nkl.2 (ENSCARG00000045430)	zranb1b (ENSCARG00000045457) #19	AKAP6 (ENSCARG00000045574)	hao1 (ENSCARG00000046129)	tmx4 (ENSCARG00000046176)	efcab2 (ENSCARG00000046217)	HNRNPU (ENSCARG00000046309)	ENSCARG00000047219	psma3 (ENSCARG00000047256)	ENSCARG00000047354	fzd3b (ENSCARG00000047557)	ENSCARG00000047587	ctbp2a (ENSCARG00000047656) #20	EDRF1 (ENSCARG00000048779) #22	tonsl (ENSCARG00000049958)	ENSCARG00000050339	nkl.2 (ENSCARG00000050424)	zranb1b (ENSCARG00000050435) #19	clec14a (ENSCARG00000050488)	SSTR1 (ENSCARG00000050498)	foxa1 (ENSCARG00000050517)	gpn1 (ENSCARG00000050537)	ENSCARG00000050677	khk (ENSCARG00000050736)	NPAS3 (ENSCARG00000050748)	ENSCARG00000050809	sptssa (ENSCARG00000050830)	eapp (ENSCARG00000050839)	snx6 (ENSCARG00000050955)
Cyprininae_a	ANCESTRAL SPECIES	24				ENSGT00940000154481.a.a.k.a	ENSGT00390000011642.f.b	ENSGT00940000155913.c.a	ENSGT00940000156674.i.a	ENSGT00940000156674.j	ENSGT00940000156509.j	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.b.a.b.b.b.a.b.a.a.b.b	ENSGT00390000010056.a.b	ENSGT01030000234517.H.b.l.a	ENSGT00940000156491.a.c.a.a	ENSGT00390000004700.b.c	ENSGT00940000154430.c.b #20	ENSGT00390000014797.k.b #22	ENSGT00940000160188.e	ENSGT00510000050935.a.a.a	ENSGT00510000050935.a.b.b	ENSGT00510000050935.b.b	ENSGT01020000230346.C.q.b.a	ENSGT00940000158045.b.d #19	ENSGT00810000125473.B.e	ENSGT00940000158051.c	ENSGT00940000158745.k.a	ENSGT00390000002766.b.b	ENSGT00940000154940.a	ENSGT00950000183000.c.b.h.b	ENSGT00940000166431.a	ENSGT00390000012799.b	ENSGT00550000074824.q
Common carp reference	MODERN SPECIES	4	ENSCCRG00000052950	zbtb2a (ENSCCRG00000081653)	rmnd1 (ENSCCRG00000017837)	ENSCCRG00000018231	ENSCCRG00000007993	ENSCCRG00000009327	ENSCCRG00000009332	slc18b1 (ENSCCRG00000009370)	ahi1 (ENSCCRG00000009378)	ENSCCRG00000075118	lft2 (ENSCCRG00000077178)	ENSCCRG00000008877	fzd3b (ENSCCRG00000005883)	ENSCCRG00000069331	ctbp2a (ENSCCRG00000067035) #20	ENSCCRG00000036587 #22	tonsl (ENSCCRG00000036565)	ENSCCRG00000074393	ENSCCRG00000067120	ENSCCRG00000028984	ENSCCRG00000073254	nkl.2 (ENSCCRG00000028988)	ENSCCRG00000060192	ENSCCRG00000062747	zranb1b (ENSCCRG00000036676) #19	AKAP6 (ENSCCRG00000025431)	NPAS3 (ENSCCRG00000021602)	EGLN3 (ENSCCRG00000073675)	snx6 (ENSCCRG00000005125)	cfl2 (ENSCCRG00000022914)	ENSCCRG00000022868
Cyprininae	ANCESTRAL SPECIES	42	ENSGT00730000111244.a.a.a	ENSGT00940000158401.h.c.a	ENSGT00390000013337.b	ENSGT00940000154481.a.a.k.b	ENSGT00390000011642.f.a	ENSGT00940000155913.c.b	ENSGT00940000156674.i.b	ENSGT00940000156509.i	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.b.a.b.b.b.a.b.a.a.a.a.b.a.b	ENSGT00390000010056.a.a	ENSGT01030000234517.H.b.l.b	ENSGT00940000156491.a.c.a.b	ENSGT00390000004700.b.d	ENSGT00940000171352.e	ENSGT00940000175884	ENSGT00390000014797.l #22	ENSGT00940000160188.f	ENSGT00510000050935.a.a.b	ENSGT00510000050935.a.b.a.b	ENSGT01000000220214	ENSGT00940000158045.b.c #19	ENSGT00810000125473.B.f	ENSGT00940000158051.d	ENSGT00940000158745.k.b	ENSGT00940000155704.jb	ENSGT00940000158745.k.a	ENSGT00390000002766.b.b	ENSGT00390000001332	ENSGT00940000154940.b	ENSGT00950000183000.c.b.h.b	ENSGT00940000166431.a
Cyprininae_a	ANCESTRAL SPECIES	108	ENSGT01050000244948.c.b.b.g	ENSGT00730000111244.a.a.a	ENSGT00940000158401.h.c.a	ENSGT00390000013337.b	ENSGT00940000154481.a.a.k.b	ENSGT00390000011642.f.a	ENSGT00940000155913.c.b	ENSGT00940000156674.i.b	ENSGT00940000156509.i	ENSGT00390000010056.a.a	ENSGT01030000234517.H.b.l.b	ENSGT00940000156491.a.c.a.b	ENSGT00390000004700.b.d	ENSGT00940000171352.e	ENSGT00940000175884	ENSGT00390000014797.l #22	ENSGT00940000160188.f	ENSGT00510000050935.a.a.b	ENSGT00510000050935.a.b.a.b	ENSGT01000000220214	ENSGT00510000050935.b.a.a.a	ENSGT01020000230346.C.q.b.b	ENSGT00940000158045.b.c #19	ENSGT00810000125473.B.f	ENSGT00940000158051.d	ENSGT00940000158745.k.b	ENSGT00390000001332	ENSGT00940000154940.b	ENSGT00950000183000.c.b.h.a	ENSGT00940000166431.b	ENSGT00390000012799.a
Golden-line barbel	MODERN SPECIES	83	ENSSGRG00000048606	ENSSGRG00000048607	stx11a (ENSSGRG00000048609)	ENSSGRG00000048610	zbtb2a (ENSSGRG00000048613)	rmnd1 (ENSSGRG00000048616)	ENSSGRG00000048651	TULP4 (ENSSGRG00000048655)	ahi1 (ENSSGRG00000048726)	lft2 (ENSSGRG00000048740)	ENSSGRG00000048747	fzd3b (ENSSGRG00000048760)	ENSSGRG00000048761	ENSSGRG00000048762	tex36 (ENSSGRG00000048763)	EDRF1 (ENSSGRG00000048764) #22	tonsl (ENSSGRG00000048809)	ENSSGRG00000048810	ENSSGRG00000048811	ENSSGRG00000048812	nkl.2 (ENSSGRG00000048813)	psmc1a (ENSSGRG00000048815)	zranb1b (ENSSGRG00000048996) #19	ENSSGRG00000049054	NPAS3 (ENSSGRG00000049055)	NPAS3 (ENSSGRG00000049056)	egln3 (ENSSGRG00000049057)	ENSSGRG00000049058	sptssa (ENSSGRG00000049060)	snx6 (ENSSGRG00000049070)	cfl2 (ENSSGRG00000049139)
Zebrafish	MODERN SPECIES	8	ENSDARG00000016161	ENSDARG00000063068	ENSDARG00000088546	TULP4 (ENSDARG00000063056)	slc18b1 (ENSDARG00000044047)	ahi1 (ENSDARG00000044056)	ENSDARG00000086256	ENSDARG00000086418	lft2 (ENSDARG00000044059)	CDC42BPA (ENSDARG00000104283)	fzd3b (ENSDARG00000058692)	ENSDARG00000103562	ENSDARG00000090072	ctbp2a (ENSDARG00000044062) #20	tex36 (ENSDARG00000097920)	EDRF1 (ENSDARG00000019834) #22	tonsl (ENSDARG00000071294)	nkl.4 (ENSDARG00000044023)	nkl.3 (ENSDARG00000089202)	nkl.2 (ENSDARG00000058673)	psmc1a (ENSDARG00000030537)	zranb1b (ENSDARG00000063190) #19	AKAP6 (ENSDARG00000077295)	NPAS3 (ENSDARG00000109820)	egln3 (ENSDARG00000032553)	sptssa (ENSDARG00000071203)	eapp (ENSDARG00000017272)	snx6 (ENSDARG00000058444)	cfl2 (ENSDARG00000014106)	ENSDARG00000063233	ENSDARG00000099745
Clupeiformes	ANCESTRAL SPECIES	411																ENSGT00390000014797 #22	ENSGT00940000160878.e #27	ENSGT00940000156570.b ##35	ENSGT00390000015799 #36	ENSGT00940000153352.B	ENSGT00940000155257.b.b	ENSGT01030000234563.b.a.b.a.b.b	ENSGT00940000153335.a.b	ENSGT00940000154939.e.b	ENSGT00390000013594	ENSGT00940000156416.d
Denticle herring	MODERN SPECIES	11	polr3a (ENSDCDG00000015024)	ZMIZ1 (ENSDCDG00000014468)	ppifb (ENSDCDG00000014430)	ZCCHC24 (ENSDCDG00000014425)	ENSDCDG00000014420	wbp2 (ENSDCDG00000014416)	ENSDCDG00000014411	mrpl38 (ENSDCDG00000014405)	ENSDCDG00000013942	ENSDCDG00000013882	znf281b (ENSDCDG00000013762)	muc13b (ENSDCDG00000013757)	ENSDCDG00000013752	ENSDCDG00000013748	cbln10 (ENSDCDG00000013745)	EDRF1 (ENSDCDG00000011530) #22	ENSDCDG00000011109	add3b (ENSDCDG00000008587)	smndc1 (ENSDCDG00000008525)	ENSDCDG00000006257	ENSDCDG00000005938 ##37	ENSDCDG00000012577 #36	ptpreb (ENSDCDG00000012425) ##35	ENSDCDG00000012347 #30	ENSDCDG00000012341	ENSDCDG00000010923	ENSDCDG00000010858	ENSDCDG00000010849 #29	ENSDCDG00000010842	zgc:123217 (ENSDCDG00000010746)	ENSDCDG00000010720
Atlantic herring	MODERN SPECIES	4	CRTAC1 (ENSCHAG00000008481)	LOXL4 (ENSCHAG00000008097)	zgc:123010 (ENSCHAG00000008078)	pyroxd2 (ENSCHAG00000007272)	slc25a28 (ENSCHAG00000007238)	ENSCHAG00000007211	got1 (ENSCHAG00000007159)	nkx2.3 (ENSCHAG00000007059)	ENSCHAG00000007034	got1 (ENSCHAG00000006994)	CNNM1 (ENSCHAG00000006990)	HPSE2 (ENSCHAG00000006872)	hps1 (ENSCHAG00000006731)	st3gal7 (ENSCHAG00000006723)	ENSCHAG00000006713	ENSCHAG00000003211 #22	ENSCHAG00000003045 #27	ENSCHAG00000003010	ENSCHAG00000002982	smndc1 (ENSCHAG00000002928)	ADD3 (ENSCHAG00000002808)	ENSCHAG00000002762	ENSCHAG00000002359	ENSCHAG00000024852	ENSCHAG00000024846	ENSCHAG00000024832	cdk1 (ENSCHAG00000024822)	ANK3 (ENSCHAG00000022990)	ccdc6a (ENSCHAG00000022856)	slc16a9a (ENSCHAG00000022849)	ENSCHAG00000022844
Osteoglossiformes	ANCESTRAL SPECIES	10	ENSGT00390000015768.i.a.m	ENSGT00940000155157.a	ENSGT00940000156955.a.a	ENSGT00940000163882	ENSGT00940000160392.p	ENSGT00950000183001.a.a.d #9	ENSGT00940000156414.q #10	ENSGT00390000004719.a #12	ENSGT00940000162535 #14	ENSGT00530000063371.B.f #16	ENSGT00390000013399 #17	ENSGT00530000063424.a.r #18	ENSGT00940000158045.b #19	ENSGT00940000154430.b #20	ENSGT00940000175884	ENSGT00390000014797 #22	ENSGT00940000155495.C.a.b.a #28	ENSGT00940000153123.C #29	ENSGT00530000063787.B.a #30	ENSGT00940000182570	ENSGT00390000015799 #36	ENSGT00950000182859.A.b.y #37
Asian bonytongue	MODERN SPECIES	19	htra1a (ENSSFOG00015027465)	ENSSFOG00015009695	hmx3a (ENSSFOG00015009713)	hmx2 (ENSSFOG00015009722)	GPR26 (ENSSFOG00015009171) #9	CPXM2 (ENSSFOG00015009746) #10	CHST15 (ENSSFOG00015009807) #12	ENSSFOG00015009823	ENSSFOG00015029254	nkx1.2la (ENSSFOG00015009852) #14	eef1akmt2 (ENSSFOG00015009906) #17	ABRAXAS2 (ENSSFOG00015009945) #18	ZRANB1 (ENSSFOG00015009991) #19	ctbp2a (ENSSFOG00015010041) #20	tex36 (ENSSFOG00015010088)	EDRF1 (ENSSFOG00015010132) #22	FANK1 (ENSSFOG00015010178) #27	ENSSFOG00015010224	ADAM12 (ENSSFOG00015010203) #28	ENSSFOG00015010239 #29	INSYN2A (ENSSFOG00015010265) #30	PTPRE (ENSSFOG00015010297) #35	ENSSFOG00015010385	MGMT (ENSSFOG00015010411) #36	EBF3 (ENSSFOG00015010434) #37	ALDH18A1 (ENSSFOG00015010509)	ENSSFOG00015010624	SORBS1 (ENSSFOG00015029914)	pdlim1 (ENSSFOG00015010881)	neurog3 (ENSSFOG00015010925)	sgpl1 (ENSSFOG00015010952)
P. kingsleyae	MODERN SPECIES	11	ENSPKIG00000000746	ENSPKIG00000000769	plekha1a (ENSPKIG00000000810)	htra1a (ENSPKIG00000000868)	ENSPKIG00000000897	hmx3a (ENSPKIG00000000912)	hmx2 (ENSPKIG00000000925)	GPR26 (ENSPKIG00000000932) #9	CPXM2 (ENSPKIG00000000947) #10	nkx1.2la (ENSPKIG00000001014) #14	FAM53B (ENSPKIG00000001032) #16	eef1akmt2 (ENSPKIG00000001059) #17	ABRAXAS2 (ENSPKIG00000001088) #18	ZRANB1 (ENSPKIG00000001121) #19	CTBP2 (ENSPKIG00000001178) #20	EDRF1 (ENSPKIG00000001321) #22	tex36 (ENSPKIG00000001448)	ADAM12 (ENSPKIG00000001470) #28	ENSPKIG00000001535 #29	INSYN2A (ENSPKIG00000001600) #30	SLK (ENSPKIG00000001638)	ENSPKIG00000001737	sfr1 (ENSPKIG00000001887)	ENSPKIG00000001908	ENSPKIG00000001925	gsto2 (ENSPKIG00000001946)	itprip (ENSPKIG00000001965)	CALHM3 (ENSPKIG00000001981)	CALHM1 (ENSPKIG00000002001)	calhm2.1 (ENSPKIG00000002024)	ENSPKIG00000002038
Spotted gar	MODERN SPECIES	671	bub3 (ENSLOCG00000008177) #7	ENSLOCG00000008167	GPR26 (ENSLOCG00000008153) #9	CPXM2 (ENSLOCG00000008139) #10	CHST15 (ENSLOCG00000008128) #12	oat (ENSLOCG00000008099) #13	nkx1.2la (ENSLOCG00000008089) #14	lhpp (ENSLOCG00000008067) #15	fam53b (ENSLOCG00000008053) #16	eef1akmt2 (ENSLOCG00000008027) #17	abraxas2 (ENSLOCG00000008016) #18	hpdl (ENSLOCG00000008001)	zranb1b (ENSLOCG00000007990) #19	ctbp2a (ENSLOCG00000007959) #20	TEX36 (ENSLOCG00000007946) #21	EDRF1 (ENSLOCG00000007911) #22	mmp21 (ENSLOCG00000007899) #23	uros (ENSLOCG00000007886) #24	bccip (ENSLOCG00000007872) #25	dhx32a (ENSLOCG00000007851) #26	FANK1 (ENSLOCG00000007819) #27	ADAM12 (ENSLOCG00000007799) #28	ENSLOCG00000007788 #29	INSYN2A (ENSLOCG00000007774) #30	dock1 (ENSLOCG00000007697) #31	foxi1 (ENSLOCG00000007685)	ENSLOCG00000007677 #34	PTPRE (ENSLOCG00000007653) #35	ENSLOCG00000007643	MGMT (ENSLOCG00000007632) #36	ebf3a (ENSLOCG00000007615) #37
Reedfish	MODERN SPECIES	10	GPR26 (ENSECRG00000009127) #9	CPXM2 (ENSECRG00000009153) #10	CHST15 (ENSECRG00000009214) #12	ENSECRG00000009226	oat (ENSECRG00000009240) #13	nkx1.2la (ENSECRG00000009252) #14	lhpp (ENSECRG00000009271) #15	fam53b (ENSECRG00000009292) #16	eef1akmt2 (ENSECRG00000009306) #17	abraxas2 (ENSECRG00000009317) #18	hpdl (ENSECRG00000009330)	zranb1b (ENSECRG00000009349) #19	ctbp2a (ENSECRG00000009364) #20	ENSECRG00000009392	ENSECRG00000009399	EDRF1 (ENSECRG00000009413) #22	mmp21 (ENSECRG00000009446) #23	bccip (ENSECRG00000009476) #25	dhx32a (ENSECRG00000009499) #26	FANK1 (ENSECRG00000009536) #27	ENSECRG00000009577 #28	ENSECRG00000009591 #29	INSYN2A (ENSECRG00000009609) #30	ENSECRG00000009622 #31	foxi1 (ENSECRG00000009638)	CLRN3 (ENSECRG00000009659) #34	PTPRE (ENSECRG00000009682) #35	ENSECRG00000009728	MGMT (ENSECRG00000009749) #36	ebf3a (ENSECRG00000009768) #37	glrx3 (ENSECRG00000009843)
Elephant shark	MODERN SPECIES	1600	ACADSB (ENSCMIG00000007641)	hmx3a (ENSCMIG00000007663)	bub3 (ENSCMIG00000007668) #7	GPR26 (ENSCMIG00000007672) #9	CPXM2 (ENSCMIG00000007686) #10	CHST15 (ENSCMIG00000007713) #12	oat (ENSCMIG00000007767) #13	ENSCMIG00000007805	abraxas2 (ENSCMIG00000007814) #18	fam53b (ENSCMIG00000007827) #16	eef1akmt2 (ENSCMIG00000007830) #17	hpdl (ENSCMIG00000007834)	zranb1b (ENSCMIG00000007841) #19	ENSCMIG00000007855 #20	ENSCMIG00000007866	EDRF1 (ENSCMIG00000007899) #22	mmp21 (ENSCMIG00000007995) #23	UROS (ENSCMIG00000008000) #24	bccip (ENSCMIG00000008006) #25	dhx32a (ENSCMIG00000008009) #26	ADAM12 (ENSCMIG00000008027) #28	ENSCMIG00000008056	ENSCMIG00000008060 #29	DOCK1 (ENSCMIG00000008075) #31	ENSCMIG00000008102 #31
Cyclostomata	ANCESTRAL SPECIES	253																ENSGT00390000014797 #22	ENSGT00940000159140 #23	ENSGT00390000009853 #24
Hagfish	MODERN SPECIES	1067				ENSEBUG00000003652	ENSEBUG00000009952	ENSEBUG00000004771	ENSEBUG00000003113	ENSEBUG00000010087	ENSEBUG00000010774	ENSEBUG00000011920	ENSEBUG00000002989	ENSEBUG00000008481	ENSEBUG00000015282	ENSEBUG00000005791	nefmb (ENSEBUG00000002753)	ENSEBUG00000009702 #22	mmp21 (ENSEBUG00000015063) #23	ENSEBUG00000001250 #24	ENSEBUG00000015755	ENSEBUG00000015500	smc3 (ENSEBUG00000015527)	dhx15 (ENSEBUG00000004428)
Ciona	ANCESTRAL SPECIES	1326																ENSGT00390000014797 #22	ENSGT00940000159140 #23
Ciona savignyi	MODERN SPECIES	236	ENSCSAVG00000010798	ENSCSAVG00000010802	ENSCSAVG00000010803	ENSCSAVG00000010805	ENSCSAVG00000010807	ENSCSAVG00000010808	ENSCSAVG00000010810	ENSCSAVG00000010843	ENSCSAVG00000010844	ENSCSAVG00000010847	ENSCSAVG00000010848	ENSCSAVG00000010850	ENSCSAVG00000010851	ENSCSAVG00000010859	ENSCSAVG00000010863	ENSCSAVG00000010867 #22	ENSCSAVG00000010871	ENSCSAVG00000010873 #23	ENSCSAVG00000010875	ENSCSAVG00000010876	ENSCSAVG00000010877	ENSCSAVG00000010881	ENSCSAVG00000010892	ENSCSAVG00000010893	ENSCSAVG00000010898	ENSCSAVG00000010904	ENSCSAVG00000010923	ENSCSAVG00000010926	ENSCSAVG00000010928	ENSCSAVG00000010929	ENSCSAVG00000010930
Ciona intestinalis	MODERN SPECIES	9	ENSCING00000012165	ENSCING00000020667	arnt (ENSCING00000008102)	ENSCING00000008100	ENSCING00000018904	ENSCING00000008107	ENSCING00000008108	ENSCING00000008112	ENSCING00000008111	ENSCING00000008110	tk (ENSCING00000008109)	ENSCING00000022715	ENSCING00000008113	ENSCING00000012159	ENSCING00000018477	ENSCING00000012158 #22	ENSCING00000012157 #23	ENSCING00000016996	ENSCING00000009906	ENSCING00000012156	ENSCING00000008117	ENSCING00000019931	ENSCING00000008118	ENSCING00000024611	ENSCING00000008120	ENSCING00000022011	ENSCING00000019611	ENSCING00000009742	ENSCING00000018077	ENSCING00000008122	ENSCING00000012153
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00390000014797 #22
Fruitfly	MODERN SPECIES	18	RpL14 (FBgn0017579)	CG5989 (FBgn0017429)	CG6282 (FBgn0035914)	S-Lap1 (FBgn0035915)	S-Lap2 (FBgn0052351)	GAPsec (FBgn0035916)	Zasp66 (FBgn0035917)	Cdc6 (FBgn0035918)	Cpr66D (FBgn0052029)	CG13305 (FBgn0035921)	Pex7 (FBgn0035922)	Arr2 (FBgn0000121)	h (FBgn0001168)	SrpRbeta (FBgn0011509)	CG32022 (FBgn0052022)	CG6511 (FBgn0035923) #22	CG43965 (FBgn0264696)	Cp18 (FBgn0000357)	Cp15 (FBgn0000355)	Cp19 (FBgn0000358)	Cp16 (FBgn0000356)	Prm (FBgn0003149)	CG13306 (FBgn0040828)	Fhos (FBgn0266084)	CG6576 (FBgn0035924)	Acbp5 (FBgn0035926)	CG13310 (FBgn0035928)	CG13311 (FBgn0035929)	CG34426 (FBgn0085455)	CG32023 (FBgn0052023)	CG34427 (FBgn0085456)