Fungi/Metazoa group ANCESTRAL SPECIES ENSGT00950000182960 #22 Bilateria ANCESTRAL SPECIES ENSGT00950000182960 #22 Chordata DUPLICATION Chordata DUPLICATION Chordata ANCESTRAL SPECIES 178 ENSGT00950000182960.a.b ##22 ENSGT00950000182960.a.a #22 Vertebrata ANCESTRAL SPECIES 90 ENSGT00950000182960.a.b ##22 ENSGT00950000182960.a.a #22 ENSGT00390000015109 ENSGT00940000157099 Gnathostomata ANCESTRAL SPECIES 172 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182960.a.a #22 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 Euteleostomi DUPLICATION Euteleostomi DUPLICATION Euteleostomi ANCESTRAL SPECIES 63 ENSGT01050000244891.B ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00950000182960.a.a.a.b #22 ENSGT00950000182960.a.a.b ##22 ENSGT00390000015109 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00550000074913 ENSGT00940000163734 ENSGT00940000156614.b ENSGT01070000253744.a.a.a.b.a.a ENSGT00940000162164 Sarcopterygii ANCESTRAL SPECIES 76 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000160705.C.b ENSGT01050000244891.B ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00950000182960.a.a.a.b #22 ENSGT00390000015109 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00550000074913 ENSGT00940000163734 ENSGT00940000156614.b ENSGT01070000253744.a.a.a.b.a.a ENSGT00940000162164 ENSGT00940000158717 Tetrapoda ANCESTRAL SPECIES 75 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000160705.C.b ENSGT01050000244891.B ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00950000182960.a.a.a.b #22 ENSGT00390000015109 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000163679 ENSGT00950000183060.a.a ENSGT00940000158717 ENSGT00940000162164 ENSGT01070000253744.a.a.a.b.a.a ENSGT00940000156614.b Amniota ANCESTRAL SPECIES 11 ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000160705.C.b ENSGT01050000244891.B ENSGT00940000158690 ENSGT00940000156819.a.b ENSGT00940000157017.a.b.a ENSGT01090000260051.b.a.b ENSGT00390000013965 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Mammalia ANCESTRAL SPECIES 21 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT01000000214817 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT00940000166332 Theria ANCESTRAL SPECIES 9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT00940000166332 Eutheria ANCESTRAL SPECIES 22 ENSGT00390000014547.c ENSGT00960000187139 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.A ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b Boreoeutheria ANCESTRAL SPECIES 12 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Euarchontoglires ANCESTRAL SPECIES 12 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Primates ANCESTRAL SPECIES 3 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00910000147524 #36 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C Haplorrhini ANCESTRAL SPECIES 6 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00910000147524 #36 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C Simiiformes DUPLICATION Simiiformes ANCESTRAL SPECIES 7 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.`b #22 ENSGT00940000160116 #23 ENSGT00390000008572 #24 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00910000147524 #36 ENSGT00900000143604 #37 ENSGT00390000011880 Catarrhini ANCESTRAL SPECIES 8 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169.a #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.`b #22 ENSGT00940000160116 #23 ENSGT00390000008572 #24 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00910000147524 #36 ENSGT00900000143604 #37 ENSGT00390000011880 Hominoidea ANCESTRAL SPECIES 13 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169.a #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.`b #22 ENSGT00940000160116 #23 ENSGT00390000008572 #24 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00910000147524 #36 ENSGT00900000143604 #37 ENSGT00390000011880 Hominidae ANCESTRAL SPECIES 16 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169.a #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.`b #22 ENSGT00940000160116 #23 ENSGT00390000008572 #24 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00910000147524 #36 ENSGT00900000143604 #37 ENSGT00390000011880 Homo/Pan/Gorilla group ANCESTRAL SPECIES 1 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169.a #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.`b #22 ENSGT00940000160116 #23 ENSGT00390000008572 #24 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00910000147524 #36 ENSGT00900000143604 #37 ENSGT00390000011880 Gorilla MODERN SPECIES 18 ALYREF (ENSGGOG00000013935) #7 ENSGGOG00000011564 #8 P4HB (ENSGGOG00000023842) #9 PPP1R27 (ENSGGOG00000006880) #10 ENSGGOG00000003494 #11 MRPL12 (ENSGGOG00000009356) #12 HGS (ENSGGOG00000009345) #13 ARL16 (ENSGGOG00000009339) #14 CCDC137 (ENSGGOG00000009333) #15 OXLD1 (ENSGGOG00000009332) #16 ENSGGOG00000015384 #17 TSPAN10 (ENSGGOG00000015380) #18 NPLOC4 (ENSGGOG00000004220) #19 FAAP100 (ENSGGOG00000004214) #20 ENSGGOG00000027785 #21 ACTG1 (ENSGGOG00000014043) #22 BAHCC1 (ENSGGOG00000006265) #23 ENSGGOG00000040343 #24 SLC38A10 (ENSGGOG00000008525) #25 NDUFAF8 (ENSGGOG00000026824) #26 TEPSIN (ENSGGOG00000008517) #27 CEP131 (ENSGGOG00000016352) #28 PVALEF (ENSGGOG00000042224) #29 AATK (ENSGGOG00000014076) #30 BAIAP2 (ENSGGOG00000014064) #31 ENSGGOG00000001708 #32 RPTOR (ENSGGOG00000006841) #33 ENSGGOG00000028585 #34 NPTX1 (ENSGGOG00000009709) #35 ENSGGOG00000042496 #36 ENSGGOG00000041112 #37 Homo/Pan group ANCESTRAL SPECIES 2 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169.a #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.`b #22 ENSGT00940000160116 #23 ENSGT00390000008572 #24 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00910000147524 #36 ENSGT00900000143604 #37 ENSGT00390000011880 Human MODERN SPECIES 8 PPP1R27 (ENSG00000182676) #10 MCRIP1 (ENSG00000225663) GCGR (ENSG00000215644) SLC25A10 (ENSG00000183048) #11 ENSG00000262660 MRPL12 (ENSG00000262814) #12 HGS (ENSG00000185359) #13 ARL16 (ENSG00000214087) #14 CCDC137 (ENSG00000185298) #15 OXLD1 (ENSG00000204237) #16 PDE6G (ENSG00000185527) #17 TSPAN10 (ENSG00000182612) #18 NPLOC4 (ENSG00000182446) #19 FAAP100 (ENSG00000185504) #20 FSCN2 (ENSG00000186765) #21 ACTG1 (ENSG00000184009) #22 BAHCC1 (ENSG00000266074) #23 SLC38A10 (ENSG00000157637) #25 NDUFAF8 (ENSG00000224877) #26 TEPSIN (ENSG00000167302) #27 CEP131 (ENSG00000141577) #28 PVALEF (ENSG00000225180) #29 AATK (ENSG00000181409) #30 BAIAP2 (ENSG00000175866) #31 CHMP6 (ENSG00000176108) #32 ENSG00000289764 RPTOR (ENSG00000141564) #33 NPTX1 (ENSG00000171246) #35 ENDOV (ENSG00000173818) RNF213 (ENSG00000173821) SLC26A11 (ENSG00000181045) Pan ANCESTRAL SPECIES 3 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00950000185883 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169.a #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.`b #22 ENSGT00940000160116 #23 ENSGT00390000008572 #24 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00910000147524 #36 ENSGT00900000143604 #37 ENSGT00390000011880 Chimpanzee DUPLICATION Chimpanzee DUPLICATION Chimpanzee DUPLICATION Chimpanzee DUPLICATION Chimpanzee DUPLICATION Chimpanzee DUPLICATION Chimpanzee MODERN SPECIES 973 ENSPTRG00000050854 ENSPTRG00000049675 ENSPTRG00000048181 ENSPTRG00000049508 ENSPTRG00000023120 ENSPTRG00000028811 ENSPTRG00000048305 ENSPTRG00000046410 ENSPTRG00000046991 ENSPTRG00000047470 ENSPTRG00000050895 #22 ENSPTRG00000046577 ENSPTRG00000047754 ENSPTRG00000047271 ENSPTRG00000048294 ENSPTRG00000049593 #22 ENSPTRG00000050266 ENSPTRG00000044684 ENSPTRG00000034101 ENSPTRG00000050564 ENSPTRG00000043157 ENSPTRG00000045105 ENSPTRG00000046311 ENSPTRG00000051395 ENSPTRG00000047951 ENSPTRG00000050914 ENSPTRG00000044405 ENSPTRG00000051366 ENSPTRG00000050675 ENSPTRG00000043772 ENSPTRG00000050911 Chimpanzee MODERN SPECIES 973 ENSPTRG00000050675 ENSPTRG00000043772 ENSPTRG00000050911 ENSPTRG00000047592 ENSPTRG00000047292 ENSPTRG00000049565 ENSPTRG00000050343 ENSPTRG00000047116 ENSPTRG00000046061 ENSPTRG00000050054 ENSPTRG00000052554 #22 ENSPTRG00000046839 ENSPTRG00000050036 ENSPTRG00000046971 ENSPTRG00000047735 ENSPTRG00000043749 #22 ENSPTRG00000052104 ENSPTRG00000049088 ENSPTRG00000046270 ENSPTRG00000045853 ENSPTRG00000049123 ENSPTRG00000048471 ENSPTRG00000052074 ENSPTRG00000046879 ENSPTRG00000050748 ENSPTRG00000050742 ENSPTRG00000049142 ENSPTRG00000047385 ENSPTRG00000051022 ENSPTRG00000046285 ENSPTRG00000017053 Chimpanzee MODERN SPECIES 973 ENSPTRG00000031338 ENSPTRG00000047409 ENSPTRG00000042298 ENSPTRG00000006812 ENSPTRG00000047530 ENSPTRG00000051781 ENSPTRG00000049908 #22 ENSPTRG00000052644 ENSPTRG00000042791 ENSPTRG00000052575 ENSPTRG00000043529 ENSPTRG00000051154 ENSPTRG00000046062 ENSPTRG00000050854 ENSPTRG00000049675 ENSPTRG00000048181 ENSPTRG00000049508 ENSPTRG00000023120 ENSPTRG00000028811 ENSPTRG00000048305 ENSPTRG00000046410 ENSPTRG00000046991 Chimpanzee MODERN SPECIES 973 ENSPTRG00000050742 ENSPTRG00000050748 ENSPTRG00000046879 ENSPTRG00000052074 ENSPTRG00000048471 ENSPTRG00000049123 ENSPTRG00000045853 ENSPTRG00000046270 ENSPTRG00000049088 ENSPTRG00000052104 ENSPTRG00000043749 #22 ENSPTRG00000047735 ENSPTRG00000046971 ENSPTRG00000050036 ENSPTRG00000046839 ENSPTRG00000052554 #22 ENSPTRG00000050054 ENSPTRG00000046061 ENSPTRG00000047116 ENSPTRG00000050343 ENSPTRG00000049565 ENSPTRG00000047292 ENSPTRG00000047592 ENSPTRG00000050911 ENSPTRG00000043772 ENSPTRG00000050675 ENSPTRG00000051366 ENSPTRG00000044405 ENSPTRG00000050914 ENSPTRG00000047951 ENSPTRG00000051395 Chimpanzee MODERN SPECIES 973 ENSPTRG00000050914 ENSPTRG00000047951 ENSPTRG00000051395 ENSPTRG00000046311 ENSPTRG00000045105 ENSPTRG00000043157 ENSPTRG00000050564 ENSPTRG00000034101 ENSPTRG00000044684 ENSPTRG00000050266 ENSPTRG00000049593 #22 ENSPTRG00000048294 ENSPTRG00000047271 ENSPTRG00000047754 ENSPTRG00000046577 ENSPTRG00000050895 #22 ENSPTRG00000047470 ENSPTRG00000046991 ENSPTRG00000046410 ENSPTRG00000048305 ENSPTRG00000028811 ENSPTRG00000023120 ENSPTRG00000049508 ENSPTRG00000048181 ENSPTRG00000049675 ENSPTRG00000050854 ENSPTRG00000046062 ENSPTRG00000051154 ENSPTRG00000043529 ENSPTRG00000052575 ENSPTRG00000042791 Chimpanzee MODERN SPECIES 889 ENSPTRG00000047474 ENSPTRG00000047155 #22 Chimpanzee MODERN SPECIES 8 P4HB (ENSPTRG00000009772) #9 PPP1R27 (ENSPTRG00000009771) #10 MCRIP1 (ENSPTRG00000041870) GCGR (ENSPTRG00000034006) ENSPTRG00000046873 SLC25A10 (ENSPTRG00000009770) #11 MRPL12 (ENSPTRG00000043438) #12 HGS (ENSPTRG00000009768) #13 ARL16 (ENSPTRG00000030016) #14 CCDC137 (ENSPTRG00000009767) #15 OXLD1 (ENSPTRG00000030740) #16 PDE6G (ENSPTRG00000045047) #17 NPLOC4 (ENSPTRG00000009764) #19 FAAP100 (ENSPTRG00000009763) #20 FSCN2 (ENSPTRG00000030742) #21 ACTG1 (ENSPTRG00000048969) #22 BAHCC1 (ENSPTRG00000034171) #23 TMEM105 (ENSPTRG00000009759) #24 SLC38A10 (ENSPTRG00000043854) #25 NDUFAF8 (ENSPTRG00000041224) #26 TEPSIN (ENSPTRG00000009755) #27 CEP131 (ENSPTRG00000009754) #28 PVALEF (ENSPTRG00000051969) #29 AATK (ENSPTRG00000009752) #30 BAIAP2 (ENSPTRG00000009750) #31 ENSPTRG00000040368 CHMP6 (ENSPTRG00000009748) RPTOR (ENSPTRG00000009747) #33 ENSPTRG00000045797 #36 NPTX1 (ENSPTRG00000009746) #35 ENDOV (ENSPTRG00000009745) Bonobo DUPLICATION Bonobo MODERN SPECIES 18 GABRP (ENSPPAG00000016335) KCNIP1 (ENSPPAG00000033996) KCNMB1 (ENSPPAG00000038648) LCP2 (ENSPPAG00000035616) FOXI1 (ENSPPAG00000024818) ENSPPAG00000010876 INSYN2B (ENSPPAG00000040832) DOCK2 (ENSPPAG00000029305) SPDL1 (ENSPPAG00000036469) SLIT3 (ENSPPAG00000033489) PANK3 (ENSPPAG00000038115) ENSPPAG00000015519 RARS1 (ENSPPAG00000043505) WWC1 (ENSPPAG00000015956) TENM2 (ENSPPAG00000035829) ENSPPAG00000035297 #22 MAT2B (ENSPPAG00000044053) HMMR (ENSPPAG00000032652) NUDCD2 (ENSPPAG00000038833) CCNG1 (ENSPPAG00000029620) GABRG2 (ENSPPAG00000044076) GABRA1 (ENSPPAG00000032313) ENSPPAG00000041258 GABRA6 (ENSPPAG00000024473) ENSPPAG00000040795 ENSPPAG00000037893 GABRB2 (ENSPPAG00000041745) ATP10B (ENSPPAG00000040058) PTTG1 (ENSPPAG00000030326) SLU7 (ENSPPAG00000032717) FAM200C (ENSPPAG00000009361) Bonobo MODERN SPECIES 8 PPP1R27 (ENSPPAG00000043740) #10 ENSPPAG00000038894 GCGR (ENSPPAG00000034213) ENSPPAG00000025843 ENSPPAG00000033525 #11 MRPL12 (ENSPPAG00000042009) #12 HGS (ENSPPAG00000042127) #13 ARL16 (ENSPPAG00000027260) #14 CCDC137 (ENSPPAG00000041503) #15 OXLD1 (ENSPPAG00000027500) #16 ENSPPAG00000029079 #17 TSPAN10 (ENSPPAG00000042359) #18 NPLOC4 (ENSPPAG00000027853) #19 FAAP100 (ENSPPAG00000037798) #20 FSCN2 (ENSPPAG00000041749) #21 ACTG1 (ENSPPAG00000037318) #22 BAHCC1 (ENSPPAG00000029233) #23 ENSPPAG00000028723 #24 SLC38A10 (ENSPPAG00000037259) #25 ENSPPAG00000031669 #26 TEPSIN (ENSPPAG00000038689) #27 CEP131 (ENSPPAG00000041781) #28 PVALEF (ENSPPAG00000029292) #29 AATK (ENSPPAG00000000212) #30 BAIAP2 (ENSPPAG00000027353) #31 ENSPPAG00000030551 #32 RPTOR (ENSPPAG00000042241) #33 ENSPPAG00000008690 #35 ENSPPAG00000043310 #36 ENSPPAG00000000477 #37 ENDOV (ENSPPAG00000034689) Orangutan MODERN SPECIES 8 ENSPPYG00000008748 #8 P4HB (ENSPPYG00000008747) #9 PPP1R27 (ENSPPYG00000008746) #10 MCRIP1 (ENSPPYG00000035026) ENSPPYG00000029603 SLC25A10 (ENSPPYG00000008745) #11 MRPL12 (ENSPPYG00000008744) #12 HGS (ENSPPYG00000008743) #13 CCDC137 (ENSPPYG00000039503) #15 OXLD1 (ENSPPYG00000008740) #16 PDE6G (ENSPPYG00000008739) #17 TSPAN10 (ENSPPYG00000008738) #18 NPLOC4 (ENSPPYG00000008737) #19 FAAP100 (ENSPPYG00000008736) #20 FSCN2 (ENSPPYG00000037969) #21 ACTG1 (ENSPPYG00000008735) #22 BAHCC1 (ENSPPYG00000008734) #23 SLC38A10 (ENSPPYG00000008731) #25 NDUFAF8 (ENSPPYG00000041448) #26 TEPSIN (ENSPPYG00000008730) #27 CEP131 (ENSPPYG00000008729) #28 PVALEF (ENSPPYG00000040719) #29 AATK (ENSPPYG00000008728) #30 BAIAP2 (ENSPPYG00000008727) #31 ENSPPYG00000031260 CHMP6 (ENSPPYG00000008725) #32 RPTOR (ENSPPYG00000029703) #33 NPTX1 (ENSPPYG00000008723) #35 ENSPPYG00000008721 RNF213 (ENSPPYG00000008719) SLC26A11 (ENSPPYG00000008717) Gibbon DUPLICATION Gibbon MODERN SPECIES 14 PHOSPHO2 (ENSNLEG00000004942) CFAP210 (ENSNLEG00000004927) PPIG (ENSNLEG00000027463) FASTKD1 (ENSNLEG00000004866) KLHL41 (ENSNLEG00000004835) BBS5 (ENSNLEG00000026730) LRP2 (ENSNLEG00000004701) DHRS9 (ENSNLEG00000004673) ENSNLEG00000004595 G6PC2 (ENSNLEG00000030485) SPC25 (ENSNLEG00000004657) NOSTRIN (ENSNLEG00000004621) ENSNLEG00000033906 ENSNLEG00000028914 CERS6 (ENSNLEG00000004584) ENSNLEG00000032461 #22 RCAN2 (ENSNLEG00000004574) CYP39A1 (ENSNLEG00000004540) SLC25A27 (ENSNLEG00000004519) TDRD6 (ENSNLEG00000004513) PLA2G7 (ENSNLEG00000004467) ENSNLEG00000004460 MEP1A (ENSNLEG00000004415) ADGRF5 (ENSNLEG00000004314) ENSNLEG00000004304 ENSNLEG00000033865 TNFRSF21 (ENSNLEG00000004300) CD2AP (ENSNLEG00000004259) ENSNLEG00000004235 ADGRF4 (ENSNLEG00000004220) OPN5 (ENSNLEG00000004202) Gibbon MODERN SPECIES 4 RAC3 (ENSNLEG00000028590) LRRC45 (ENSNLEG00000013927) ENSNLEG00000033192 ENSNLEG00000027619 ENSNLEG00000036032 ENSNLEG00000028861 #11 MRPL12 (ENSNLEG00000035133) #12 HGS (ENSNLEG00000013843) #13 ARL16 (ENSNLEG00000013831) #14 ENSNLEG00000013830 #15 OXLD1 (ENSNLEG00000027533) #16 ENSNLEG00000013827 #18 NPLOC4 (ENSNLEG00000013771) #19 FAAP100 (ENSNLEG00000013759) #20 ENSNLEG00000035531 #21 ACTG1 (ENSNLEG00000013385) #22 ENSNLEG00000013379 #23 ENSNLEG00000013378 #24 SLC38A10 (ENSNLEG00000013374) #25 NDUFAF8 (ENSNLEG00000013367) #26 TEPSIN (ENSNLEG00000013329) #27 CEP131 (ENSNLEG00000015918) #28 PVALEF (ENSNLEG00000029635) #29 AATK (ENSNLEG00000015904) #30 BAIAP2 (ENSNLEG00000015872) #31 ENSNLEG00000015870 ENSNLEG00000015868 #32 RPTOR (ENSNLEG00000015777) #33 NPTX1 (ENSNLEG00000015771) #35 ENSNLEG00000027453 #36 ENDOV (ENSNLEG00000015754) Cercopithecidae ANCESTRAL SPECIES 6 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169.a #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.`b #22 ENSGT00910000147003 ENSGT00940000160116 #23 ENSGT00390000008572 #24 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00940000176115 ENSGT00940000168473 Cercopithecinae ANCESTRAL SPECIES 4 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169.a #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.`b #22 ENSGT00910000147003 ENSGT00940000160116 #23 ENSGT00390000008572 #24 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00940000176115 ENSGT00940000168473 Cercopithecinae_a ANCESTRAL SPECIES 4 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169.a #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.`b #22 ENSGT00910000147003 ENSGT00940000160116 #23 ENSGT00390000008572 #24 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00940000176115 ENSGT00940000168473 Macaca ANCESTRAL SPECIES 4 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169.a #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.`b #22 ENSGT00910000147003 ENSGT00940000160116 #23 ENSGT00390000008572 #24 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C Pig-tailed macaque MODERN SPECIES 432 P4HB (ENSMNEG00000041915) #9 PPP1R27 (ENSMNEG00000039255) #10 MCRIP1 (ENSMNEG00000041387) GCGR (ENSMNEG00000044954) SLC25A10 (ENSMNEG00000037946) #11 MRPL12 (ENSMNEG00000016503) #12 HGS (ENSMNEG00000037102) #13 ARL16 (ENSMNEG00000045381) #14 CCDC137 (ENSMNEG00000044934) #15 OXLD1 (ENSMNEG00000044064) #16 PDE6G (ENSMNEG00000044656) #17 TSPAN10 (ENSMNEG00000042284) #18 NPLOC4 (ENSMNEG00000039349) #19 FAAP100 (ENSMNEG00000041842) #20 FSCN2 (ENSMNEG00000043892) #21 ACTG1 (ENSMNEG00000010642) #22 ENSMNEG00000038211 BAHCC1 (ENSMNEG00000040618) #23 ENSMNEG00000043367 #24 SLC38A10 (ENSMNEG00000031117) #25 NDUFAF8 (ENSMNEG00000039036) #26 TEPSIN (ENSMNEG00000042713) #27 CEP131 (ENSMNEG00000038783) #28 PVALEF (ENSMNEG00000035686) #29 AATK (ENSMNEG00000040787) #30 BAIAP2 (ENSMNEG00000041437) #31 CHMP6 (ENSMNEG00000037408) #32 RPTOR (ENSMNEG00000019585) #33 NPTX1 (ENSMNEG00000040285) #35 ENDOV (ENSMNEG00000020009) RNF213 (ENSMNEG00000030107) Macaca_a ANCESTRAL SPECIES 4 ENSGT00410000025615 #7 ENSGT00390000006233.c.b #8 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169.a #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.`b #22 ENSGT00910000147003 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000161627.a.a.a.b.b.b.b.a.a.b.a.b.a.b ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT01000000221884 Rhesus DUPLICATION Rhesus MODERN SPECIES 11 ENSMMUG00000031947 ENSMMUG00000057502 ENSMMUG00000065004 EDEM1 (ENSMMUG00000065088) ARL8B (ENSMMUG00000008810) BHLHE40 (ENSMMUG00000056699) ITPR1 (ENSMMUG00000012574) SUMF1 (ENSMMUG00000004734) SETMAR (ENSMMUG00000017828) LRRN1 (ENSMMUG00000049373) CRBN (ENSMMUG00000017986) TRNT1 (ENSMMUG00000017983) IL5RA (ENSMMUG00000001849) CNTN4 (ENSMMUG00000001847) ENSMMUG00000056158 ENSMMUG00000009425 #22 ENSMMUG00000051943 CNTN6 (ENSMMUG00000008549) CHL1 (ENSMMUG00000001349) CNTN3 (ENSMMUG00000021241) ENSMMUG00000051810 PDZRN3 (ENSMMUG00000012661) ENSMMUG00000064384 PPP4R2 (ENSMMUG00000016959) GXYLT2 (ENSMMUG00000022507) SHQ1 (ENSMMUG00000009571) RYBP (ENSMMUG00000042444) PROK2 (ENSMMUG00000018494) GPR27 (ENSMMUG00000040565) EIF4E3 (ENSMMUG00000007780) FOXP1 (ENSMMUG00000002889) Rhesus MODERN SPECIES 7 ALYREF (ENSMMUG00000012884) #7 ARHGDIA (ENSMMUG00000009949) #8 P4HB (ENSMMUG00000009242) #9 PPP1R27 (ENSMMUG00000009243) #10 GCGR (ENSMMUG00000000256) SLC25A10 (ENSMMUG00000004457) #11 HGS (ENSMMUG00000008833) #13 ARL16 (ENSMMUG00000045575) #14 CCDC137 (ENSMMUG00000008831) #15 OXLD1 (ENSMMUG00000061636) #16 PDE6G (ENSMMUG00000047080) #17 TSPAN10 (ENSMMUG00000001589) #18 NPLOC4 (ENSMMUG00000001586) #19 FAAP100 (ENSMMUG00000001585) #20 FSCN2 (ENSMMUG00000001583) #21 ACTG1 (ENSMMUG00000012054) #22 ENSMMUG00000060280 ENSMMUG00000054036 BAHCC1 (ENSMMUG00000018984) #23 SLC38A10 (ENSMMUG00000003292) #25 NDUFAF8 (ENSMMUG00000037732) #26 TEPSIN (ENSMMUG00000003291) #27 ENSMMUG00000053331 CEP131 (ENSMMUG00000021096) #28 PVALEF (ENSMMUG00000040377) #29 ENSMMUG00000056700 AATK (ENSMMUG00000015514) #30 BAIAP2 (ENSMMUG00000015512) #31 CHMP6 (ENSMMUG00000060324) #32 ENSMMUG00000062775 RPTOR (ENSMMUG00000006761) #33 Crab-eating macaque DUPLICATION Crab-eating macaque MODERN SPECIES 1 TRIB3 (ENSMFAG00000040519) RBCK1 (ENSMFAG00000042138) TBC1D20 (ENSMFAG00000012722) ENSMFAG00000064485 ENSMFAG00000039007 TCF15 (ENSMFAG00000044282) SRXN1 (ENSMFAG00000055717) ENSMFAG00000038011 ENSMFAG00000062067 ENSMFAG00000058502 ENSMFAG00000062953 SLC52A3 (ENSMFAG00000042037) FAM110A (ENSMFAG00000060881) ANGPT4 (ENSMFAG00000041964) RSPO4 (ENSMFAG00000034095) ENSMFAG00000060259 #22 PSMF1 (ENSMFAG00000002683) TMEM74B (ENSMFAG00000037644) C20orf202 (ENSMFAG00000031425) RAD21L1 (ENSMFAG00000032243) SDCBP2 (ENSMFAG00000031687) FKBP1A (ENSMFAG00000042021) NSFL1C (ENSMFAG00000043986) SIRPB2 (ENSMFAG00000042221) ENSMFAG00000057379 ENSMFAG00000030737 ENSMFAG00000057652 ENSMFAG00000041667 ENSMFAG00000040668 RPL29 (ENSMFAG00000065377) ENSMFAG00000000677 Crab-eating macaque MODERN SPECIES 7 PYCR1 (ENSMFAG00000040932) MAFG (ENSMFAG00000050292) ENSMFAG00000057977 PCYT2 (ENSMFAG00000000478) NPB (ENSMFAG00000061505) ENSMFAG00000052859 ENSMFAG00000043931 ALYREF (ENSMFAG00000001394) #7 CCDC137 (ENSMFAG00000036416) #15 OXLD1 (ENSMFAG00000043539) #16 ENSMFAG00000049013 #17 TSPAN10 (ENSMFAG00000030900) #18 NPLOC4 (ENSMFAG00000033200) #19 FAAP100 (ENSMFAG00000042241) #20 FSCN2 (ENSMFAG00000053754) #21 ACTG1 (ENSMFAG00000030086) #22 ENSMFAG00000047631 SLC38A10 (ENSMFAG00000040675) #25 NDUFAF8 (ENSMFAG00000045199) #26 TEPSIN (ENSMFAG00000045078) #27 ENSMFAG00000031225 CEP131 (ENSMFAG00000041952) #28 PVALEF (ENSMFAG00000030454) #29 ENSMFAG00000057012 BAIAP2 (ENSMFAG00000043088) #31 ENSMFAG00000003684 #32 RPTOR (ENSMFAG00000000138) #33 NPTX1 (ENSMFAG00000040743) #35 ENSMFAG00000060641 ENDOV (ENSMFAG00000044601) ENSMFAG00000062798 Cercopithecinae_b ANCESTRAL SPECIES 19 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169.a #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.`b #22 ENSGT00910000147003 ENSGT00940000160116 #23 ENSGT00390000008572 #24 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00910000147524 #36 ENSGT00900000143604 #37 Olive baboon MODERN SPECIES 8 ARHGDIA (ENSPANG00000019264) #8 P4HB (ENSPANG00000019308) #9 PPP1R27 (ENSPANG00000019316) #10 ENSPANG00000035212 SLC25A10 (ENSPANG00000019332) #11 MRPL12 (ENSPANG00000019331) #12 HGS (ENSPANG00000019330) #13 ARL16 (ENSPANG00000019328) #14 CCDC137 (ENSPANG00000019327) #15 OXLD1 (ENSPANG00000035091) #16 PDE6G (ENSPANG00000019325) #17 TSPAN10 (ENSPANG00000019340) #18 NPLOC4 (ENSPANG00000019382) #19 FAAP100 (ENSPANG00000019407) #20 FSCN2 (ENSPANG00000019424) #21 ACTG1 (ENSPANG00000003965) #22 BAHCC1 (ENSPANG00000019486) #23 SLC38A10 (ENSPANG00000019487) #25 NDUFAF8 (ENSPANG00000019491) #26 TEPSIN (ENSPANG00000019509) #27 CEP131 (ENSPANG00000019507) #28 PVALEF (ENSPANG00000035727) #29 AATK (ENSPANG00000019503) #30 BAIAP2 (ENSPANG00000019604) #31 CHMP6 (ENSPANG00000019601) #32 RPTOR (ENSPANG00000019598) #33 NPTX1 (ENSPANG00000043224) #35 ENDOV (ENSPANG00000019621) RNF213 (ENSPANG00000019655) SLC26A11 (ENSPANG00000019669) SGSH (ENSPANG00000019668) Cercopithecinae_d ANCESTRAL SPECIES 15 ENSGT00940000159603 #10 ENSGT00960000187388 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169.a #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.`b #22 ENSGT00910000147003 ENSGT00940000160116 #23 ENSGT00390000008572 #24 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00910000147524 #36 ENSGT00900000143604 #37 Sooty mangabey DUPLICATION Sooty mangabey MODERN SPECIES 415 TMEM89 (ENSCATG00000043281) UQCRC1 (ENSCATG00000038381) COL7A1 (ENSCATG00000042701) PFKFB4 (ENSCATG00000038306) SHISA5 (ENSCATG00000002962) ATRIP (ENSCATG00000035021) TMA7 (ENSCATG00000043756) CCDC51 (ENSCATG00000039399) PLXNB1 (ENSCATG00000044029) FBXW12 (ENSCATG00000039647) SPINK8 (ENSCATG00000013332) NME6 (ENSCATG00000013771) ENSCATG00000029886 ZNF589 (ENSCATG00000035420) CAMP (ENSCATG00000024897) ENSCATG00000043341 #22 ENSCATG00000015380 CDC25A (ENSCATG00000032942) ENSCATG00000041037 MAP4 (ENSCATG00000032929) DHX30 (ENSCATG00000043684) SMARCC1 (ENSCATG00000036207) CSPG5 (ENSCATG00000006491) ELP6 (ENSCATG00000041567) SCAP (ENSCATG00000043713) PTPN23 (ENSCATG00000036276) KLHL18 (ENSCATG00000006242) KIF9 (ENSCATG00000042158) SETD2 (ENSCATG00000043683) NBEAL2 (ENSCATG00000030307) CCDC12 (ENSCATG00000033681) Sooty mangabey MODERN SPECIES 137 PPP1R27 (ENSCATG00000040109) #10 ENSCATG00000020735 MCRIP1 (ENSCATG00000031830) GCGR (ENSCATG00000039442) SLC25A10 (ENSCATG00000039444) #11 MRPL12 (ENSCATG00000045041) #12 HGS (ENSCATG00000040899) #13 ARL16 (ENSCATG00000031623) #14 CCDC137 (ENSCATG00000042817) #15 OXLD1 (ENSCATG00000016584) #16 PDE6G (ENSCATG00000039855) #17 TSPAN10 (ENSCATG00000001443) #18 NPLOC4 (ENSCATG00000036603) #19 FAAP100 (ENSCATG00000027144) #20 FSCN2 (ENSCATG00000031882) #21 ENSCATG00000006142 #22 ENSCATG00000034514 BAHCC1 (ENSCATG00000031480) #23 ENSCATG00000035891 #24 SLC38A10 (ENSCATG00000040753) #25 NDUFAF8 (ENSCATG00000041787) #26 TEPSIN (ENSCATG00000044950) #27 CEP131 (ENSCATG00000034939) #28 PVALEF (ENSCATG00000021631) #29 AATK (ENSCATG00000035929) #30 BAIAP2 (ENSCATG00000042000) #31 CHMP6 (ENSCATG00000013293) #32 RPTOR (ENSCATG00000020355) #33 NPTX1 (ENSCATG00000044571) #35 ENDOV (ENSCATG00000042834) RNF213 (ENSCATG00000042518) Drill DUPLICATION Drill MODERN SPECIES 806 TMEM89 (ENSMLEG00000030848) UQCRC1 (ENSMLEG00000030358) ENSMLEG00000034673 PFKFB4 (ENSMLEG00000036770) SHISA5 (ENSMLEG00000044205) ATRIP (ENSMLEG00000041280) TMA7 (ENSMLEG00000013301) CCDC51 (ENSMLEG00000043149) PLXNB1 (ENSMLEG00000041769) FBXW12 (ENSMLEG00000043342) SPINK8 (ENSMLEG00000041095) NME6 (ENSMLEG00000032866) ZNF589 (ENSMLEG00000028173) ENSMLEG00000032415 CAMP (ENSMLEG00000037421) ENSMLEG00000034080 #22 CDC25A (ENSMLEG00000041783) ENSMLEG00000003302 MAP4 (ENSMLEG00000021775) ENSMLEG00000004461 DHX30 (ENSMLEG00000023203) SMARCC1 (ENSMLEG00000002974) CSPG5 (ENSMLEG00000042730) ELP6 (ENSMLEG00000042220) SCAP (ENSMLEG00000042717) PTPN23 (ENSMLEG00000029015) KLHL18 (ENSMLEG00000033926) KIF9 (ENSMLEG00000030077) SETD2 (ENSMLEG00000035263) NBEAL2 (ENSMLEG00000041035) CCDC12 (ENSMLEG00000038060) Drill MODERN SPECIES 65 PPP1R27 (ENSMLEG00000036063) #10 ENSMLEG00000000088 MCRIP1 (ENSMLEG00000043926) GCGR (ENSMLEG00000037442) ENSMLEG00000000540 #11 MRPL12 (ENSMLEG00000041715) #12 HGS (ENSMLEG00000028514) #13 ARL16 (ENSMLEG00000028751) #14 CCDC137 (ENSMLEG00000043566) #15 OXLD1 (ENSMLEG00000032289) #16 PDE6G (ENSMLEG00000043011) #17 TSPAN10 (ENSMLEG00000039685) #18 NPLOC4 (ENSMLEG00000033303) #19 FAAP100 (ENSMLEG00000036321) #20 FSCN2 (ENSMLEG00000035395) #21 ENSMLEG00000042380 #22 ENSMLEG00000033350 BAHCC1 (ENSMLEG00000034871) #23 ENSMLEG00000035879 #24 SLC38A10 (ENSMLEG00000012627) #25 NDUFAF8 (ENSMLEG00000041077) #26 TEPSIN (ENSMLEG00000031191) #27 CEP131 (ENSMLEG00000033360) #28 PVALEF (ENSMLEG00000033317) #29 AATK (ENSMLEG00000010556) #30 BAIAP2 (ENSMLEG00000028973) #31 CHMP6 (ENSMLEG00000041587) #32 RPTOR (ENSMLEG00000040013) #33 NPTX1 (ENSMLEG00000042009) #35 ENSMLEG00000001002 #36 ENSMLEG00000003338 #37 Rhinopithecus ANCESTRAL SPECIES 18 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169.a #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.`b #22 ENSGT00910000147003 ENSGT00940000160116 #23 ENSGT00390000008572 #24 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00910000147047 Black snub-nosed monkey DUPLICATION Black snub-nosed monkey MODERN SPECIES 573 ENSRBIG00000027913 ENSRBIG00000044597 ENSRBIG00000019460 ST6GALNAC5 (ENSRBIG00000026022) PIGK (ENSRBIG00000034118) ENSRBIG00000009902 ENSRBIG00000036281 #22 AK5 (ENSRBIG00000033937) ZZZ3 (ENSRBIG00000042574) USP33 (ENSRBIG00000041156) ENSRBIG00000029018 MIGA1 (ENSRBIG00000026094) NEXN (ENSRBIG00000032042) FUBP1 (ENSRBIG00000042950) Black snub-nosed monkey MODERN SPECIES 1629 ENSRBIG00000038245 #22 OR10AD1 (ENSRBIG00000028936) ENSRBIG00000032502 CCDC184 (ENSRBIG00000020435) ASB8 (ENSRBIG00000043401) ENSRBIG00000038885 SENP1 (ENSRBIG00000041356) COL2A1 (ENSRBIG00000008860) TMEM106C (ENSRBIG00000039284) VDR (ENSRBIG00000032268) HDAC7 (ENSRBIG00000041373) SLC48A1 (ENSRBIG00000037103) ENSRBIG00000033157 ENDOU (ENSRBIG00000017516) RPAP3 (ENSRBIG00000032745) Black snub-nosed monkey MODERN SPECIES 621 P4HB (ENSRBIG00000036977) #9 PPP1R27 (ENSRBIG00000041442) #10 MCRIP1 (ENSRBIG00000042904) GCGR (ENSRBIG00000032497) ENSRBIG00000030378 #11 MRPL12 (ENSRBIG00000029573) #12 HGS (ENSRBIG00000024761) #13 ARL16 (ENSRBIG00000039807) #14 CCDC137 (ENSRBIG00000044616) #15 OXLD1 (ENSRBIG00000029624) #16 PDE6G (ENSRBIG00000033214) #17 TSPAN10 (ENSRBIG00000041732) #18 NPLOC4 (ENSRBIG00000036817) #19 FAAP100 (ENSRBIG00000038343) #20 FSCN2 (ENSRBIG00000007902) #21 ENSRBIG00000040203 #22 ENSRBIG00000040156 BAHCC1 (ENSRBIG00000032244) #23 ENSRBIG00000043600 #24 SLC38A10 (ENSRBIG00000039161) #25 NDUFAF8 (ENSRBIG00000037247) #26 TEPSIN (ENSRBIG00000041247) #27 CEP131 (ENSRBIG00000025778) #28 PVALEF (ENSRBIG00000042298) #29 AATK (ENSRBIG00000029109) #30 BAIAP2 (ENSRBIG00000035573) #31 CHMP6 (ENSRBIG00000039011) #32 RPTOR (ENSRBIG00000029534) #33 NPTX1 (ENSRBIG00000014765) #35 ENDOV (ENSRBIG00000042566) RNF213 (ENSRBIG00000030616) Golden snub-nosed monkey DUPLICATION Golden snub-nosed monkey MODERN SPECIES 2291 VPS54 (ENSRROG00000036114) ENSRROG00000035217 #22 UGP2 (ENSRROG00000043535) Golden snub-nosed monkey MODERN SPECIES 757 ENSRROG00000036798 #22 Golden snub-nosed monkey MODERN SPECIES 2916 P4HB (ENSRROG00000027663) #9 PPP1R27 (ENSRROG00000038895) #10 MCRIP1 (ENSRROG00000044595) GCGR (ENSRROG00000041144) SLC25A10 (ENSRROG00000034947) #11 MRPL12 (ENSRROG00000010180) #12 HGS (ENSRROG00000041145) #13 ARL16 (ENSRROG00000029050) #14 CCDC137 (ENSRROG00000034730) #15 OXLD1 (ENSRROG00000031044) #16 ENSRROG00000041249 #17 TSPAN10 (ENSRROG00000032742) #18 NPLOC4 (ENSRROG00000014304) #19 FAAP100 (ENSRROG00000044773) #20 FSCN2 (ENSRROG00000034748) #21 ACTG1 (ENSRROG00000029288) #22 ENSRROG00000030763 BAHCC1 (ENSRROG00000041039) #23 ENSRROG00000029569 #24 SLC38A10 (ENSRROG00000042478) #25 NDUFAF8 (ENSRROG00000034416) #26 TEPSIN (ENSRROG00000029890) #27 CEP131 (ENSRROG00000029891) #28 PVALEF (ENSRROG00000038021) #29 AATK (ENSRROG00000042900) #30 BAIAP2 (ENSRROG00000043664) #31 CHMP6 (ENSRROG00000045136) #32 ENSRROG00000036506 RPTOR (ENSRROG00000037595) #33 NPTX1 (ENSRROG00000020834) #35 ENDOV (ENSRROG00000037314) Golden snub-nosed monkey MODERN SPECIES 3340 ENSRROG00000035205 #22 ENSRROG00000029088 Platyrrhini DUPLICATION Platyrrhini DUPLICATION Platyrrhini ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.`b.a.a #22 Mas night monkey DUPLICATION Mas night monkey MODERN SPECIES 287 NXF3 (ENSANAG00000027929) ENSANAG00000031389 ENSANAG00000023872 TCEAL7 (ENSANAG00000031024) BEX3 (ENSANAG00000020665) ENSANAG00000020471 #22 RAB40A (ENSANAG00000019831) ENSANAG00000029717 TCEAL1 (ENSANAG00000030936) ENSANAG00000031384 TMEM31 (ENSANAG00000026176) ENSANAG00000024801 PLP1 (ENSANAG00000023695) RAB9B (ENSANAG00000031345) Mas night monkey MODERN SPECIES 658 ENSANAG00000027437 PCGF6 (ENSANAG00000028199) TAF5 (ENSANAG00000033631) ATP5MK (ENSANAG00000033958) PDCD11 (ENSANAG00000034576) CALHM2 (ENSANAG00000027035) CALHM1 (ENSANAG00000032120) CALHM3 (ENSANAG00000032187) NEURL1 (ENSANAG00000037067) SH3PXD2A (ENSANAG00000037670) STN1 (ENSANAG00000038147) ENSANAG00000038444 SLK (ENSANAG00000020590) ENSANAG00000026163 COL17A1 (ENSANAG00000027237) ENSANAG00000030939 #22 SFR1 (ENSANAG00000031275) CFAP43 (ENSANAG00000032094) GSTO1 (ENSANAG00000033006) GSTO2 (ENSANAG00000034517) ITPRIP (ENSANAG00000034870) ENSANAG00000035279 CFAP58 (ENSANAG00000028104) Cebidae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.`b.a.a #22 Cebidae_a ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.`b.a.a #22 Capuchin MODERN SPECIES 98 AKAP9 (ENSCCAG00000022030) MTERF1 (ENSCCAG00000026587) CDK14 (ENSCCAG00000028845) CLDN12 (ENSCCAG00000018810) GTPBP10 (ENSCCAG00000025362) CFAP69 (ENSCCAG00000018686) STEAP2 (ENSCCAG00000025217) ENSCCAG00000033073 ZNF804B (ENSCCAG00000019667) STEAP4 (ENSCCAG00000026373) SRI (ENSCCAG00000026477) ADAM22 (ENSCCAG00000026545) ENSCCAG00000037793 SLC25A40 (ENSCCAG00000036682) RUNDC3B (ENSCCAG00000036650) ENSCCAG00000014316 #22 ABCB1 (ENSCCAG00000035513) ABCB4 (ENSCCAG00000021743) Platyrrhini ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.`b.a.b #22 Cebidae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.`b.a.b #22 Marmoset DUPLICATION Marmoset MODERN SPECIES 6 FLNB (ENSCJAG00000019764) DNASE1L3 (ENSCJAG00000019760) PXK (ENSCJAG00000019744) ENSCJAG00000019739 KCTD6 (ENSCJAG00000077075) ACOX2 (ENSCJAG00000019727) FAM107A (ENSCJAG00000019725) FAM3D (ENSCJAG00000019719) CFAP20DC (ENSCJAG00000019711) FHIT (ENSCJAG00000019708) PTPRG (ENSCJAG00000019680) FEZF2 (ENSCJAG00000079813) C3orf14 (ENSCJAG00000068672) ENSCJAG00000019620 ENSCJAG00000077198 ENSCJAG00000086397 #22 SYNPR (ENSCJAG00000019605) SNTN (ENSCJAG00000041591) C3orf49 (ENSCJAG00000019599) THOC7 (ENSCJAG00000034899) ENSCJAG00000081411 ATXN7 (ENSCJAG00000019570) PSMD6 (ENSCJAG00000019540) ENSCJAG00000071158 PRICKLE2 (ENSCJAG00000019532) ADAMTS9 (ENSCJAG00000019487) ENSCJAG00000066923 MAGI1 (ENSCJAG00000019439) ENSCJAG00000079349 ENSCJAG00000072067 SLC25A26 (ENSCJAG00000013660) Marmoset MODERN SPECIES 5 TMEM17 (ENSCJAG00000045778) ENSCJAG00000077815 EHBP1 (ENSCJAG00000008586) OTX1 (ENSCJAG00000083222) ENSCJAG00000075756 WDPCP (ENSCJAG00000007061) ENSCJAG00000007018 UGP2 (ENSCJAG00000006960) VPS54 (ENSCJAG00000006914) PELI1 (ENSCJAG00000006889) ENSCJAG00000070703 ENSCJAG00000006878 ENSCJAG00000046867 AFTPH (ENSCJAG00000006819) SERTAD2 (ENSCJAG00000006818) ENSCJAG00000074553 #22 ENSCJAG00000074052 SLC1A4 (ENSCJAG00000006795) CEP68 (ENSCJAG00000006788) ENSCJAG00000072263 ENSCJAG00000074307 ENSCJAG00000046275 ACTR2 (ENSCJAG00000006722) SPRED2 (ENSCJAG00000006693) ENSCJAG00000080598 ENSCJAG00000079193 ENSCJAG00000067866 ENSCJAG00000073899 MEIS1 (ENSCJAG00000006613) ETAA1 (ENSCJAG00000006604) ENSCJAG00000083243 Mas night monkey MODERN SPECIES 416 ZNF207 (ENSANAG00000033773) PSMD11 (ENSANAG00000021703) CDK5R1 (ENSANAG00000012728) MYO1D (ENSANAG00000036261) ENSANAG00000037868 TMEM98 (ENSANAG00000038126) SPACA3 (ENSANAG00000035068) ASIC2 (ENSANAG00000001281) CCL2 (ENSANAG00000037893) CCL7 (ENSANAG00000022972) CCL11 (ENSANAG00000025265) CCL8 (ENSANAG00000023316) ENSANAG00000034079 CCL1 (ENSANAG00000023858) TMEM132E (ENSANAG00000029169) ENSANAG00000006396 #22 ENSANAG00000034074 CCT6B (ENSANAG00000036626) Platyrrhini ANCESTRAL SPECIES 1 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190.b #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.`b.b #22 ENSGT00940000160116 #23 ENSGT00390000008572 #24 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C Cebidae ANCESTRAL SPECIES 25 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190.b #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.`b.b #22 ENSGT00940000160116 #23 ENSGT00390000008572 #24 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Marmoset DUPLICATION Marmoset MODERN SPECIES 78 ENSCJAG00000070166 BMP15 (ENSCJAG00000073925) SHROOM4 (ENSCJAG00000008300) DGKK (ENSCJAG00000003016) CCNB3 (ENSCJAG00000056643) AKAP4 (ENSCJAG00000048404) CLCN5 (ENSCJAG00000002945) USP27X (ENSCJAG00000002942) ENSCJAG00000079549 PAGE4 (ENSCJAG00000002935) PAGE1 (ENSCJAG00000002926) ENSCJAG00000044748 ENSCJAG00000085129 ENSCJAG00000071901 ENSCJAG00000002889 ENSCJAG00000077893 #22 PPP1R3F (ENSCJAG00000002866) FOXP3 (ENSCJAG00000002813) CCDC22 (ENSCJAG00000002771) CACNA1F (ENSCJAG00000002728) PRICKLE3 (ENSCJAG00000040589) PLP2 (ENSCJAG00000002681) MAGIX (ENSCJAG00000002679) GPKOW (ENSCJAG00000002656) WDR45 (ENSCJAG00000002633) PRAF2 (ENSCJAG00000078035) CCDC120 (ENSCJAG00000002605) ENSCJAG00000084243 GRIPAP1 (ENSCJAG00000002531) KCND1 (ENSCJAG00000002523) OTUD5 (ENSCJAG00000002507) Marmoset MODERN SPECIES 9 NECTIN4 (ENSCJAG00000005452) ARHGAP30 (ENSCJAG00000005467) USF1 (ENSCJAG00000005396) TSTD1 (ENSCJAG00000005513) F11R (ENSCJAG00000005522) ITLN1 (ENSCJAG00000005561) CD244 (ENSCJAG00000005583) LY9 (ENSCJAG00000005606) SLAMF7 (ENSCJAG00000005659) ENSCJAG00000005681 ENSCJAG00000080448 SLAMF1 (ENSCJAG00000005699) ENSCJAG00000070646 CD84 (ENSCJAG00000005734) SLAMF6 (ENSCJAG00000080867) ENSCJAG00000069817 #22 VANGL2 (ENSCJAG00000005758) NCSTN (ENSCJAG00000005777) COPA (ENSCJAG00000005837) PEX19 (ENSCJAG00000005879) DCAF8 (ENSCJAG00000005913) PEA15 (ENSCJAG00000082639) CASQ1 (ENSCJAG00000073940) ENSCJAG00000079945 IGSF8 (ENSCJAG00000041164) KCNJ9 (ENSCJAG00000006092) ENSCJAG00000074194 ENSCJAG00000044098 ATP1A2 (ENSCJAG00000006022) SLAMF9 (ENSCJAG00000006099) IGSF9 (ENSCJAG00000006107) Marmoset MODERN SPECIES 17 P4HB (ENSCJAG00000002940) #9 PPP1R27 (ENSCJAG00000002956) #10 ENSCJAG00000002959 GCGR (ENSCJAG00000002966) SLC25A10 (ENSCJAG00000001659) #11 MRPL12 (ENSCJAG00000001652) #12 HGS (ENSCJAG00000001631) #13 ARL16 (ENSCJAG00000001596) #14 CCDC137 (ENSCJAG00000001630) #15 OXLD1 (ENSCJAG00000001620) #16 PDE6G (ENSCJAG00000044903) #17 TSPAN10 (ENSCJAG00000001598) #18 NPLOC4 (ENSCJAG00000001569) #19 FAAP100 (ENSCJAG00000001556) #20 FSCN2 (ENSCJAG00000001539) #21 ACTG1 (ENSCJAG00000002885) #22 ENSCJAG00000071087 BAHCC1 (ENSCJAG00000007971) #23 SLC38A10 (ENSCJAG00000078733) #25 NDUFAF8 (ENSCJAG00000055989) #26 TEPSIN (ENSCJAG00000000052) #27 CEP131 (ENSCJAG00000013483) #28 PVALEF (ENSCJAG00000045869) #29 AATK (ENSCJAG00000003209) #30 BAIAP2 (ENSCJAG00000003222) #31 CHMP6 (ENSCJAG00000003261) #32 ENSCJAG00000086349 RPTOR (ENSCJAG00000003276) #33 NPTX1 (ENSCJAG00000047217) #35 ENDOV (ENSCJAG00000003329) ENSCJAG00000071703 Cebidae_a ANCESTRAL SPECIES 17 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190.b #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.`b.b #22 ENSGT00940000160116 #23 ENSGT00390000008572 #24 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Capuchin MODERN SPECIES 36 P4HB (ENSCCAG00000036326) #9 PPP1R27 (ENSCCAG00000029731) #10 MCRIP1 (ENSCCAG00000021803) GCGR (ENSCCAG00000029495) SLC25A10 (ENSCCAG00000023086) #11 MRPL12 (ENSCCAG00000026887) #12 HGS (ENSCCAG00000031186) #13 ARL16 (ENSCCAG00000022659) #14 CCDC137 (ENSCCAG00000036148) #15 OXLD1 (ENSCCAG00000028315) #16 PDE6G (ENSCCAG00000029657) #17 TSPAN10 (ENSCCAG00000022262) #18 NPLOC4 (ENSCCAG00000025242) #19 FAAP100 (ENSCCAG00000038034) #20 FSCN2 (ENSCCAG00000023280) #21 ACTG1 (ENSCCAG00000027615) #22 BAHCC1 (ENSCCAG00000021146) #23 ENSCCAG00000029923 SLC38A10 (ENSCCAG00000015754) #25 NDUFAF8 (ENSCCAG00000037935) #26 TEPSIN (ENSCCAG00000005772) #27 CEP131 (ENSCCAG00000027742) #28 PVALEF (ENSCCAG00000035632) #29 AATK (ENSCCAG00000025536) #30 BAIAP2 (ENSCCAG00000021113) #31 CHMP6 (ENSCCAG00000031018) #32 RPTOR (ENSCCAG00000036370) #33 NPTX1 (ENSCCAG00000022846) #35 ENDOV (ENSCCAG00000035297) RNF213 (ENSCCAG00000036667) ENSCCAG00000023651 Bolivian squirrel monkey DUPLICATION Bolivian squirrel monkey MODERN SPECIES 198 ENSSBOG00000025039 KCNRG (ENSSBOG00000023070) TRIM13 (ENSSBOG00000020064) SPRYD7 (ENSSBOG00000031956) ENSSBOG00000030646 #22 KPNA3 (ENSSBOG00000030689) EBPL (ENSSBOG00000028545) RCBTB1 (ENSSBOG00000017490) PHF11 (ENSSBOG00000034363) SETDB2 (ENSSBOG00000023249) CAB39L (ENSSBOG00000027469) CDADC1 (ENSSBOG00000025762) MLNR (ENSSBOG00000035313) FNDC3A (ENSSBOG00000026737) CYSLTR2 (ENSSBOG00000025475) ENSSBOG00000019051 RCBTB2 (ENSSBOG00000026825) LPAR6 (ENSSBOG00000036320) ENSSBOG00000026221 RB1 (ENSSBOG00000027893) Bolivian squirrel monkey MODERN SPECIES 165 ENSSBOG00000027541 ENSSBOG00000025816 PCDH19 (ENSSBOG00000016103) TNMD (ENSSBOG00000025329) TSPAN6 (ENSSBOG00000035182) SRPX2 (ENSSBOG00000027490) SYTL4 (ENSSBOG00000001847) ENSSBOG00000027919 #22 CSTF2 (ENSSBOG00000021649) NOX1 (ENSSBOG00000026785) XKRX (ENSSBOG00000022190) ARL13A (ENSSBOG00000024611) TRMT2B (ENSSBOG00000020336) TMEM35A (ENSSBOG00000022548) CENPI (ENSSBOG00000010675) DRP2 (ENSSBOG00000023966) TAF7L (ENSSBOG00000023870) ENSSBOG00000029851 BTK (ENSSBOG00000028229) ENSSBOG00000018776 ENSSBOG00000033998 GLA (ENSSBOG00000035213) ARMCX4 (ENSSBOG00000033782) Bolivian squirrel monkey MODERN SPECIES 44 CDK14 (ENSSBOG00000033241) ENSSBOG00000018560 GTPBP10 (ENSSBOG00000034053) CFAP69 (ENSSBOG00000028540) STEAP2 (ENSSBOG00000031505) ENSSBOG00000030075 ZNF804B (ENSSBOG00000018086) ENSSBOG00000006326 STEAP4 (ENSSBOG00000034157) SRI (ENSSBOG00000012640) ENSSBOG00000010968 ENSSBOG00000033141 ADAM22 (ENSSBOG00000034841) ENSSBOG00000033659 SLC25A40 (ENSSBOG00000033766) ENSSBOG00000021846 #22 RUNDC3B (ENSSBOG00000019448) ENSSBOG00000029172 ABCB4 (ENSSBOG00000004485) CROT (ENSSBOG00000031669) TMEM243 (ENSSBOG00000024652) DMTF1 (ENSSBOG00000033329) ELAPOR2 (ENSSBOG00000021701) GRM3 (ENSSBOG00000030858) ENSSBOG00000029504 ENSSBOG00000026350 SEMA3D (ENSSBOG00000030636) SEMA3A (ENSSBOG00000031691) SEMA3E (ENSSBOG00000000413) ENSSBOG00000032952 ENSSBOG00000035675 Mas night monkey DUPLICATION Mas night monkey MODERN SPECIES 776 CDK14 (ENSANAG00000034381) CLDN12 (ENSANAG00000019188) GTPBP10 (ENSANAG00000020267) CFAP69 (ENSANAG00000026248) STEAP2 (ENSANAG00000029220) ENSANAG00000022768 ENSANAG00000023207 ENSANAG00000019602 ZNF804B (ENSANAG00000035191) STEAP4 (ENSANAG00000037956) ENSANAG00000022466 ADAM22 (ENSANAG00000034950) ENSANAG00000035490 SLC25A40 (ENSANAG00000033214) RUNDC3B (ENSANAG00000026218) ENSANAG00000028505 #22 ABCB4 (ENSANAG00000022051) CROT (ENSANAG00000028065) Mas night monkey MODERN SPECIES 219 ENSANAG00000031548 #22 Mas night monkey MODERN SPECIES 1059 ENSANAG00000029411 #9 PPP1R27 (ENSANAG00000037087) #10 MCRIP1 (ENSANAG00000023764) GCGR (ENSANAG00000034898) SLC25A10 (ENSANAG00000021908) #11 ENSANAG00000037237 #12 HGS (ENSANAG00000021392) #13 ARL16 (ENSANAG00000029434) #14 CCDC137 (ENSANAG00000028812) #15 OXLD1 (ENSANAG00000031803) #16 PDE6G (ENSANAG00000031926) #17 TSPAN10 (ENSANAG00000022946) #18 NPLOC4 (ENSANAG00000035556) #19 FAAP100 (ENSANAG00000038098) #20 FSCN2 (ENSANAG00000024711) #21 ENSANAG00000027813 #22 BAHCC1 (ENSANAG00000035276) #23 SLC38A10 (ENSANAG00000032488) #25 NDUFAF8 (ENSANAG00000038177) #26 TEPSIN (ENSANAG00000034844) #27 CEP131 (ENSANAG00000032982) #28 PVALEF (ENSANAG00000031955) #29 AATK (ENSANAG00000033263) #30 BAIAP2 (ENSANAG00000033877) #31 CHMP6 (ENSANAG00000026709) #32 RPTOR (ENSANAG00000029459) #33 NPTX1 (ENSANAG00000001615) #35 ENSANAG00000019606 #37 ENDOV (ENSANAG00000029466) RNF213 (ENSANAG00000034538) SLC26A11 (ENSANAG00000036151) Simiiformes DUPLICATION Simiiformes DUPLICATION Simiiformes ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.z.a.a ##22 Platyrrhini ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.z.a.a ##22 Mas night monkey MODERN SPECIES 1029 LYZ (ENSANAG00000019339) CPSF6 (ENSANAG00000019240) CPM (ENSANAG00000038366) ENSANAG00000038209 ZNF641 (ENSANAG00000036405) C12orf54 (ENSANAG00000035791) LALBA (ENSANAG00000027355) KANSL2 (ENSANAG00000029846) CCNT1 (ENSANAG00000019549) TEX49 (ENSANAG00000024703) ADCY6 (ENSANAG00000030000) CACNB3 (ENSANAG00000023621) DDX23 (ENSANAG00000018663) RND1 (ENSANAG00000032196) CCDC65 (ENSANAG00000025259) ENSANAG00000036811 ##22 FKBP11 (ENSANAG00000032791) ENSANAG00000030850 ARF3 (ENSANAG00000025111) ENSANAG00000020636 WNT10B (ENSANAG00000031838) WNT1 (ENSANAG00000026167) DDN (ENSANAG00000027078) PRKAG1 (ENSANAG00000029035) KMT2D (ENSANAG00000024519) RHEBL1 (ENSANAG00000025035) DHH (ENSANAG00000023041) LMBR1L (ENSANAG00000038013) ENSANAG00000028464 TUBA1A (ENSANAG00000034955) TUBA1C (ENSANAG00000031279) Catarrhini ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.z.a.a ##22 Cercopithecidae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.z.a.a ##22 Cercopithecinae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.z.a.a ##22 Cercopithecinae_a ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.z.a.a ##22 Cercopithecinae_b ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.z.a.a ##22 Cercopithecinae_d ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.z.a.a ##22 Sooty mangabey MODERN SPECIES 103 DESI1 (ENSCATG00000000926) PMM1 (ENSCATG00000041928) CSDC2 (ENSCATG00000035356) POLR3H (ENSCATG00000018316) ACO2 (ENSCATG00000030437) PHF5A (ENSCATG00000012251) TOB2 (ENSCATG00000021391) ENSCATG00000022368 TEF (ENSCATG00000034168) ZC3H7B (ENSCATG00000037774) RANGAP1 (ENSCATG00000001985) CHADL (ENSCATG00000040617) L3MBTL2 (ENSCATG00000037314) EP300 (ENSCATG00000043641) ENSCATG00000044606 ENSCATG00000033630 ##22 RBX1 (ENSCATG00000036288) XPNPEP3 (ENSCATG00000035961) ENSCATG00000041540 ENSCATG00000013183 ENSCATG00000043953 MCHR1 (ENSCATG00000025929) MRTFA (ENSCATG00000044298) SGSM3 (ENSCATG00000037436) ADSL (ENSCATG00000039632) TNRC6B (ENSCATG00000029291) FAM83F (ENSCATG00000035519) GRAP2 (ENSCATG00000030826) ENTHD1 (ENSCATG00000037159) CACNA1I (ENSCATG00000044010) RPS19BP1 (ENSCATG00000029854) Simiiformes ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.z.a.b ##22 Platyrrhini ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.z.a.b ##22 Mas night monkey MODERN SPECIES 472 ENSANAG00000029424 DYRK1B (ENSANAG00000027313) ENSANAG00000021806 ##22 LEUTX (ENSANAG00000021681) ENSANAG00000019359 ENSANAG00000033366 ENSANAG00000030788 CLC (ENSANAG00000030743) ENSANAG00000035743 ENSANAG00000035165 EID2 (ENSANAG00000020213) SELENOV (ENSANAG00000024587) PSMC4 (ENSANAG00000032302) ENSANAG00000027258 ZNF546 (ENSANAG00000020598) ZNF780B (ENSANAG00000036094) ZNF780A (ENSANAG00000026313) MAP3K10 (ENSANAG00000038142) Cebidae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.z.a.b ##22 Cebidae_a ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.z.a.b ##22 Capuchin MODERN SPECIES 8 WNT5A (ENSCCAG00000026473) LRTM1 (ENSCCAG00000023708) CACNA2D3 (ENSCCAG00000031035) ENSCCAG00000021665 LHX5 (ENSCCAG00000020560) SDSL (ENSCCAG00000031519) ENSCCAG00000023459 ##22 SDS (ENSCCAG00000027682) PLBD2 (ENSCCAG00000019538) SLC8B1 (ENSCCAG00000025451) TPCN1 (ENSCCAG00000018033) IQCD (ENSCCAG00000031044) RITA1 (ENSCCAG00000035806) DDX54 (ENSCCAG00000022625) CFAP73 (ENSCCAG00000012732) RASAL1 (ENSCCAG00000037050) DTX1 (ENSCCAG00000018591) OAS2 (ENSCCAG00000023534) ENSCCAG00000018803 OAS1 (ENSCCAG00000018223) RPH3A (ENSCCAG00000033364) ENSCCAG00000034238 Simiiformes ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.z.b ##22 Platyrrhini ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.z.b ##22 Cebidae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.z.b ##22 Cebidae_a ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.z.b ##22 Capuchin MODERN SPECIES 166 ENSCCAG00000023172 ZNF326 (ENSCCAG00000029464) ENSCCAG00000027777 BARHL2 (ENSCCAG00000032703) ZNF644 (ENSCCAG00000028733) HFM1 (ENSCCAG00000033206) CDC7 (ENSCCAG00000035924) ENSCCAG00000023085 TGFBR3 (ENSCCAG00000029516) ENSCCAG00000022756 ##22 BRDT (ENSCCAG00000031906) ENSCCAG00000025258 EPHX4 (ENSCCAG00000029678) ENSCCAG00000038015 ENSCCAG00000027791 ENSCCAG00000033925 ENSCCAG00000036616 ENSCCAG00000029619 BTBD8 (ENSCCAG00000031364) C1orf146 (ENSCCAG00000032973) GLMN (ENSCCAG00000038123) RPAP2 (ENSCCAG00000024859) GFI1 (ENSCCAG00000036072) EVI5 (ENSCCAG00000034070) ENSCCAG00000021472 Tarsier DUPLICATION Tarsier MODERN SPECIES 7134 ENSTSYG00000037017 MIS18BP1 (ENSTSYG00000012488) ENSTSYG00000036497 ENSTSYG00000033140 #22 Tarsier MODERN SPECIES 3168 ENSTSYG00000014006 #22 Tarsier MODERN SPECIES 3887 ENSTSYG00000025520 #22 Strepsirrhini ANCESTRAL SPECIES 4 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Bushbaby MODERN SPECIES 133 P4HB (ENSOGAG00000002373) #9 PPP1R27 (ENSOGAG00000002372) #10 MCRIP1 (ENSOGAG00000025695) GCGR (ENSOGAG00000031238) SLC25A10 (ENSOGAG00000003671) #11 MRPL12 (ENSOGAG00000005297) #12 HGS (ENSOGAG00000005291) #13 ARL16 (ENSOGAG00000025368) #14 CCDC137 (ENSOGAG00000011125) #15 OXLD1 (ENSOGAG00000011121) #16 PDE6G (ENSOGAG00000011117) #17 TSPAN10 (ENSOGAG00000028807) #18 NPLOC4 (ENSOGAG00000015173) #19 FAAP100 (ENSOGAG00000007492) #20 FSCN2 (ENSOGAG00000028396) #21 ACTG1 (ENSOGAG00000008040) #22 BAHCC1 (ENSOGAG00000030207) #23 SLC38A10 (ENSOGAG00000013779) #25 NDUFAF8 (ENSOGAG00000028896) #26 TEPSIN (ENSOGAG00000013775) #27 CEP131 (ENSOGAG00000031821) #28 BAIAP2 (ENSOGAG00000009247) #31 CHMP6 (ENSOGAG00000010539) #32 RPTOR (ENSOGAG00000010520) #33 ENSOGAG00000025634 NPTX1 (ENSOGAG00000030439) #35 ENDOV (ENSOGAG00000027594) ENSOGAG00000006001 ENSOGAG00000005987 SLC26A11 (ENSOGAG00000007512) SGSH (ENSOGAG00000007511) Lemuriformes ANCESTRAL SPECIES 2 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Mouse lemur MODERN SPECIES 7 P4HB (ENSMICG00000001144) #9 PPP1R27 (ENSMICG00000044822) #10 MCRIP1 (ENSMICG00000028892) GCGR (ENSMICG00000028550) SLC25A10 (ENSMICG00000008678) #11 MRPL12 (ENSMICG00000047418) #12 HGS (ENSMICG00000008647) #13 ARL16 (ENSMICG00000036087) #14 CCDC137 (ENSMICG00000008641) #15 OXLD1 (ENSMICG00000008636) #16 PDE6G (ENSMICG00000008627) #17 TSPAN10 (ENSMICG00000008615) #18 NPLOC4 (ENSMICG00000008580) #19 FAAP100 (ENSMICG00000008568) #20 FSCN2 (ENSMICG00000031762) #21 ACTG1 (ENSMICG00000014863) #22 BAHCC1 (ENSMICG00000010598) #23 SLC38A10 (ENSMICG00000010970) #25 NDUFAF8 (ENSMICG00000026980) #26 TEPSIN (ENSMICG00000043654) #27 CEP131 (ENSMICG00000030567) #28 PVALEF (ENSMICG00000027447) #29 BAIAP2 (ENSMICG00000011082) #31 AATK (ENSMICG00000027120) #30 CHMP6 (ENSMICG00000011074) #32 RPTOR (ENSMICG00000011051) #33 NPTX1 (ENSMICG00000035956) #35 ENSMICG00000038041 #37 ENDOV (ENSMICG00000037907) ENGASE (ENSMICG00000014875) RBFOX3 (ENSMICG00000014898) Lemuriformes_a ANCESTRAL SPECIES 18 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Coquerels sifaka MODERN SPECIES 656 P4HB (ENSPCOG00000018728) #9 PPP1R27 (ENSPCOG00000024253) #10 MCRIP1 (ENSPCOG00000021144) GCGR (ENSPCOG00000028818) SLC25A10 (ENSPCOG00000020713) #11 MRPL12 (ENSPCOG00000016998) #12 HGS (ENSPCOG00000016292) #13 ARL16 (ENSPCOG00000015012) #14 CCDC137 (ENSPCOG00000028431) #15 OXLD1 (ENSPCOG00000028305) #16 PDE6G (ENSPCOG00000008591) #17 TSPAN10 (ENSPCOG00000027460) #18 NPLOC4 (ENSPCOG00000014788) #19 FAAP100 (ENSPCOG00000028605) #20 FSCN2 (ENSPCOG00000027028) #21 ACTG1 (ENSPCOG00000023063) #22 BAHCC1 (ENSPCOG00000013232) #23 Greater bamboo lemur DUPLICATION Greater bamboo lemur MODERN SPECIES 703 ENSPSMG00000006097 ENSPSMG00000006084 #22 ENSPSMG00000006078 Greater bamboo lemur MODERN SPECIES 596 ACTG1 (ENSPSMG00000004138) #22 BAHCC1 (ENSPSMG00000004169) #23 SLC38A10 (ENSPSMG00000004181) #25 NDUFAF8 (ENSPSMG00000004208) #26 TEPSIN (ENSPSMG00000004239) #27 CEP131 (ENSPSMG00000004314) #28 AATK (ENSPSMG00000004343) #30 BAIAP2 (ENSPSMG00000004748) #31 CHMP6 (ENSPSMG00000005118) #32 RPTOR (ENSPSMG00000005171) #33 NPTX1 (ENSPSMG00000005181) #35 ENDOV (ENSPSMG00000005184) RNF213 (ENSPSMG00000005247) SLC26A11 (ENSPSMG00000005289) SGSH (ENSPSMG00000005317) CARD14 (ENSPSMG00000005372) Greater bamboo lemur MODERN SPECIES 776 ADGRG5 (ENSPSMG00000016923) CCDC102A (ENSPSMG00000016890) DOK4 (ENSPSMG00000016877) POLR2C (ENSPSMG00000016841) COQ9 (ENSPSMG00000016828) CIAPIN1 (ENSPSMG00000016786) CCL17 (ENSPSMG00000016730) ENSPSMG00000016727 CCL22 (ENSPSMG00000016720) PLLP (ENSPSMG00000016714) ENSPSMG00000016686 RSPRY1 (ENSPSMG00000016638) PSME3IP1 (ENSPSMG00000016579) CPNE2 (ENSPSMG00000016561) NLRC5 (ENSPSMG00000016490) ENSPSMG00000016410 #22 HERPUD1 (ENSPSMG00000016372) SLC12A3 (ENSPSMG00000016276) NUP93 (ENSPSMG00000016171) ENSPSMG00000016120 ENSPSMG00000016098 MT3 (ENSPSMG00000016087) MT4 (ENSPSMG00000016069) BBS2 (ENSPSMG00000016019) OGFOD1 (ENSPSMG00000015889) ENSPSMG00000015812 AMFR (ENSPSMG00000015776) ENSPSMG00000015697 CES5A (ENSPSMG00000015669) ENSPSMG00000015652 KCNG4 (ENSPSMG00000015596) Euarchontoglires_A ANCESTRAL SPECIES 12 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Glires ANCESTRAL SPECIES 11 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000164307 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000163679 Rodentia DUPLICATION Rodentia DUPLICATION Rodentia ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.db.a #22 Rodentia_A ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.db.a #22 Sciuridae ANCESTRAL SPECIES 4 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.db.a #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541.j #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Marmotini ANCESTRAL SPECIES 36 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.db.a #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541.j #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C.r ENSGT01070000253775.b ENSGT00390000013080 Marmotini_b ANCESTRAL SPECIES 20 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.db.a #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541.j #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C.r ENSGT01070000253775.b ENSGT00390000013080 Squirrel MODERN SPECIES 194 ARHGDIA (ENSSTOG00000015756) #8 P4HB (ENSSTOG00000026026) #9 PPP1R27 (ENSSTOG00000028022) #10 MCRIP1 (ENSSTOG00000025718) GCGR (ENSSTOG00000027046) SLC25A10 (ENSSTOG00000029677) #11 MRPL12 (ENSSTOG00000031761) #12 HGS (ENSSTOG00000000091) #13 ARL16 (ENSSTOG00000025354) #14 CCDC137 (ENSSTOG00000000089) #15 PDE6G (ENSSTOG00000000085) #17 TSPAN10 (ENSSTOG00000000083) #18 NPLOC4 (ENSSTOG00000000080) #19 FAAP100 (ENSSTOG00000000078) #20 FSCN2 (ENSSTOG00000028223) #21 ENSSTOG00000006868 #22 BAHCC1 (ENSSTOG00000021534) #23 ENSSTOG00000001364 #25 NDUFAF8 (ENSSTOG00000024124) #26 TEPSIN (ENSSTOG00000001357) #27 CEP131 (ENSSTOG00000004884) #28 AATK (ENSSTOG00000021093) #30 ENSSTOG00000032682 BAIAP2 (ENSSTOG00000005731) #31 CHMP6 (ENSSTOG00000020405) #32 RPTOR (ENSSTOG00000002905) #33 NPTX1 (ENSSTOG00000025715) #35 ENDOV (ENSSTOG00000027436) RNF213 (ENSSTOG00000020237) SLC26A11 (ENSSTOG00000014833) SGSH (ENSSTOG00000005466) Alpin marmot MODERN SPECIES 90 ANAPC11 (ENSMMMG00000005453) ARHGDIA (ENSMMMG00000005480) #8 P4HB (ENSMMMG00000005494) #9 MCRIP1 (ENSMMMG00000005529) SLC25A10 (ENSMMMG00000005551) #11 MRPL12 (ENSMMMG00000005577) #12 HGS (ENSMMMG00000005586) #13 ARL16 (ENSMMMG00000005609) #14 CCDC137 (ENSMMMG00000005620) #15 ENSMMMG00000005731 #16 TSPAN10 (ENSMMMG00000005734) #18 PDE6G (ENSMMMG00000005769) #17 NPLOC4 (ENSMMMG00000005787) #19 FAAP100 (ENSMMMG00000005853) #20 FSCN2 (ENSMMMG00000006216) #21 ACTG1 (ENSMMMG00000006224) #22 SLC38A10 (ENSMMMG00000006531) #25 TEPSIN (ENSMMMG00000006619) #27 PVALEF (ENSMMMG00000006668) #29 AATK (ENSMMMG00000006676) #30 BAIAP2 (ENSMMMG00000006754) #31 CHMP6 (ENSMMMG00000007088) #32 RPTOR (ENSMMMG00000007095) #33 ENSMMMG00000007165 NPTX1 (ENSMMMG00000007172) #35 ENSMMMG00000007185 ENSMMMG00000007189 SLC26A11 (ENSMMMG00000007226) SGSH (ENSMMMG00000007250) CARD14 (ENSMMMG00000007269) ENSMMMG00000007309 Eurasian red squirrel MODERN SPECIES 12 ARHGDIA (ENSSVLG00005018349) #8 P4HB (ENSSVLG00005018406) #9 PPP1R27 (ENSSVLG00005018481) #10 MCRIP1 (ENSSVLG00005018541) GCGR (ENSSVLG00005018678) SLC25A10 (ENSSVLG00005018780) #11 MRPL12 (ENSSVLG00005018826) #12 ARL16 (ENSSVLG00005018922) #14 CCDC137 (ENSSVLG00005019032) #15 OXLD1 (ENSSVLG00005019115) #16 PDE6G (ENSSVLG00005019138) #17 TSPAN10 (ENSSVLG00005019196) #18 NPLOC4 (ENSSVLG00005019392) #19 FAAP100 (ENSSVLG00005019478) #20 FSCN2 (ENSSVLG00005019552) #21 ENSSVLG00005019596 #22 BAHCC1 (ENSSVLG00005019700) #23 ENSSVLG00005019763 NDUFAF8 (ENSSVLG00005010765) #26 TEPSIN (ENSSVLG00005010808) #27 CEP131 (ENSSVLG00005010888) #28 PVALEF (ENSSVLG00005011634) #29 AATK (ENSSVLG00005011785) #30 BAIAP2 (ENSSVLG00005012471) #31 ENSSVLG00005012656 #32 ENSSVLG00005012709 #33 NPTX1 (ENSSVLG00005012817) #35 ENSSVLG00005012888 #37 ENDOV (ENSSVLG00005012915) RNF213 (ENSSVLG00005014189) SLC26A11 (ENSSVLG00005016606) Rodentia_B ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.db.a #22 Myomorpha ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.db.a #22 Muroidea ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.db.a #22 Upper Galilee mountains blind mole rat MODERN SPECIES 392 Arhgdia (ENSNGAG00000001460) #8 ENSNGAG00000022248 #9 Ppp1r27 (ENSNGAG00000024333) #10 Mcrip1 (ENSNGAG00000009636) Gcgr (ENSNGAG00000022508) Slc25a10 (ENSNGAG00000024310) #11 Mrpl12 (ENSNGAG00000010189) #12 Hgs (ENSNGAG00000018310) #13 Arl16 (ENSNGAG00000010707) #14 Ccdc137 (ENSNGAG00000021904) #15 ENSNGAG00000022974 #16 Pde6g (ENSNGAG00000024140) #17 Tspan10 (ENSNGAG00000010462) #18 Nploc4 (ENSNGAG00000013406) #19 Faap100 (ENSNGAG00000016742) #20 ENSNGAG00000012084 #22 Bahcc1 (ENSNGAG00000014344) #23 Slc38a10 (ENSNGAG00000011784) #25 Ndufaf8 (ENSNGAG00000020112) #26 Tepsin (ENSNGAG00000023521) #27 Cep131 (ENSNGAG00000017280) #28 Aatk (ENSNGAG00000022847) #30 Baiap2 (ENSNGAG00000001272) #31 Chmp6 (ENSNGAG00000021679) #32 Rptor (ENSNGAG00000012846) #33 Nptx1 (ENSNGAG00000021863) #35 ENSNGAG00000021532 ENSNGAG00000001026 Slc26a11 (ENSNGAG00000024050) Sgsh (ENSNGAG00000023587) Card14 (ENSNGAG00000021431) Rodentia ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.db.b #22 Rodentia_A ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.db.b #22 Sciuridae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.db.b #22 Eurasian red squirrel MODERN SPECIES 4 ENSSVLG00005008531 ENSSVLG00005008588 ENSSVLG00005008604 ENSSVLG00005008627 ENSSVLG00005008638 ENSSVLG00005008672 ENSSVLG00005008687 ENSSVLG00005008707 ENSSVLG00005008729 ENSSVLG00005008840 ENSSVLG00005008967 FAM240B (ENSSVLG00005009079) ENSSVLG00005009296 ZNF658 (ENSSVLG00005010264) ZNF484 (ENSSVLG00005010330) ENSSVLG00005010501 #22 MFSD14B (ENSSVLG00005010541) ENSSVLG00005010596 IARS1 (ENSSVLG00005010679) NOL8 (ENSSVLG00005010795) CENPP (ENSSVLG00005010886) OGN (ENSSVLG00005011020) OMD (ENSSVLG00005011068) ASPN (ENSSVLG00005011113) ECM2 (ENSSVLG00005011184) IPPK (ENSSVLG00005011238) BICD2 (ENSSVLG00005011289) FGD3 (ENSSVLG00005011363) SUSD3 (ENSSVLG00005011771) CARD19 (ENSSVLG00005011962) NINJ1 (ENSSVLG00005011989) Marmotini ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.db.b #22 Marmotini_b ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.db.b #22 Squirrel MODERN SPECIES 419 ENSSTOG00000026134 ENSSTOG00000019559 ENSSTOG00000025630 ENSSTOG00000033408 ENSSTOG00000020423 ENSSTOG00000030343 NBDY (ENSSTOG00000033489) ENSSTOG00000024953 UBQLN2 (ENSSTOG00000014053) KLF8 (ENSSTOG00000012012) ENSSTOG00000031660 #22 RRAGB (ENSSTOG00000004660) ENSSTOG00000019963 FOXR2 (ENSSTOG00000014071) ENSSTOG00000028849 USP51 (ENSSTOG00000016321) ENSSTOG00000030531 Rodentia_B ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.db.b #22 Myomorpha ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.db.b #22 Muroidea ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.db.b #22 Upper Galilee mountains blind mole rat MODERN SPECIES 485 Fbxw17 (ENSNGAG00000010163) Slc12a1 (ENSNGAG00000019829) Ctxn2 (ENSNGAG00000017667) ENSNGAG00000010756 Slc24a5 (ENSNGAG00000000925) Sema6d (ENSNGAG00000008187) Sqor (ENSNGAG00000016277) Bloc1s6 (ENSNGAG00000000881) Slc30a4 (ENSNGAG00000019503) AA467197 (ENSNGAG00000019050) ENSNGAG00000018215 Gatm (ENSNGAG00000020438) ENSNGAG00000019081 ENSNGAG00000016110 #22 Shf (ENSNGAG00000014190) Duox1 (ENSNGAG00000020793) Duoxa1 (ENSNGAG00000001141) Duoxa2 (ENSNGAG00000010918) Duox2 (ENSNGAG00000014762) Sord (ENSNGAG00000011504) Terb2 (ENSNGAG00000000628) Trim69 (ENSNGAG00000017042) ENSNGAG00000013079 B2m (ENSNGAG00000011440) Patl2 (ENSNGAG00000020368) Spg11 (ENSNGAG00000006405) ENSNGAG00000017917 Ctdspl2 (ENSNGAG00000011548) Rodentia ANCESTRAL SPECIES 4 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.eb #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Rodentia_A ANCESTRAL SPECIES 3 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.eb #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Hystricomorpha ANCESTRAL SPECIES 24 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.eb #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 Naked mole-rat female MODERN SPECIES 12 P4HB (ENSHGLG00000006261) #9 PPP1R27 (ENSHGLG00000005910) #10 ENSHGLG00000005222 GCGR (ENSHGLG00000004371) SLC25A10 (ENSHGLG00000010287) #11 MRPL12 (ENSHGLG00000009470) #12 HGS (ENSHGLG00000008394) #13 ARL16 (ENSHGLG00000033015) #14 CCDC137 (ENSHGLG00000044667) #15 OXLD1 (ENSHGLG00000040014) #16 PDE6G (ENSHGLG00000008357) #17 TSPAN10 (ENSHGLG00000013685) #18 ENSHGLG00000015156 #19 FAAP100 (ENSHGLG00000012377) #20 FSCN2 (ENSHGLG00000012271) #21 ACTG1 (ENSHGLG00000009170) #22 BAHCC1 (ENSHGLG00000006440) #23 SLC38A10 (ENSHGLG00000004919) #25 NDUFAF8 (ENSHGLG00000009200) #26 TEPSIN (ENSHGLG00000008179) #27 CEP131 (ENSHGLG00000005455) #28 AATK (ENSHGLG00000004598) #30 BAIAP2 (ENSHGLG00000004417) #31 CHMP6 (ENSHGLG00000009561) #32 ENSHGLG00000008858 RPTOR (ENSHGLG00000006474) #33 NPTX1 (ENSHGLG00000048442) #35 ENSHGLG00000034473 #37 ENDOV (ENSHGLG00000004976) ENSHGLG00000009957 ENSHGLG00000046238 Hystricomorpha_a ANCESTRAL SPECIES 19 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.eb #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 ENSGT00940000160777 Guinea pig MODERN SPECIES 76 P4HB (ENSCPOG00000012247) #9 PPP1R27 (ENSCPOG00000015239) #10 MCRIP1 (ENSCPOG00000040444) GCGR (ENSCPOG00000025298) SLC25A10 (ENSCPOG00000037669) #11 MRPL12 (ENSCPOG00000035389) #12 HGS (ENSCPOG00000020715) #13 ARL16 (ENSCPOG00000034122) #14 CCDC137 (ENSCPOG00000012535) #15 ENSCPOG00000012543 #16 PDE6G (ENSCPOG00000022389) #17 TSPAN10 (ENSCPOG00000022223) #18 NPLOC4 (ENSCPOG00000007800) #19 FAAP100 (ENSCPOG00000001797) #20 FSCN2 (ENSCPOG00000007000) #21 ACTG1 (ENSCPOG00000012101) #22 BAHCC1 (ENSCPOG00000007113) #23 SLC38A10 (ENSCPOG00000009528) #25 NDUFAF8 (ENSCPOG00000036649) #26 TEPSIN (ENSCPOG00000009236) #27 CEP131 (ENSCPOG00000009516) #28 AATK (ENSCPOG00000000078) #30 BAIAP2 (ENSCPOG00000000076) #31 CHMP6 (ENSCPOG00000008245) #32 RPTOR (ENSCPOG00000012991) #33 NPTX1 (ENSCPOG00000035765) #35 ENDOV (ENSCPOG00000005529) ENSCPOG00000030755 SLC26A11 (ENSCPOG00000005217) SGSH (ENSCPOG00000005198) CARD14 (ENSCPOG00000005182) Hystricomorpha_b ANCESTRAL SPECIES 12 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.eb #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00940000169906 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 Long-tailed chinchilla MODERN SPECIES 213 P4HB (ENSCLAG00000007202) #9 PPP1R27 (ENSCLAG00000007730) #10 MCRIP1 (ENSCLAG00000007829) GCGR (ENSCLAG00000015161) SLC25A10 (ENSCLAG00000014262) #11 MRPL12 (ENSCLAG00000012764) #12 HGS (ENSCLAG00000013050) #13 ARL16 (ENSCLAG00000013425) #14 CCDC137 (ENSCLAG00000013900) #15 OXLD1 (ENSCLAG00000012707) #16 PDE6G (ENSCLAG00000005896) #17 TSPAN10 (ENSCLAG00000006657) #18 NPLOC4 (ENSCLAG00000007199) #19 FAAP100 (ENSCLAG00000012330) #20 FSCN2 (ENSCLAG00000014531) #21 ACTG1 (ENSCLAG00000008725) #22 BAHCC1 (ENSCLAG00000008910) #23 SLC38A10 (ENSCLAG00000006098) #25 NDUFAF8 (ENSCLAG00000005497) #26 TEPSIN (ENSCLAG00000009300) #27 CEP131 (ENSCLAG00000006611) #28 AATK (ENSCLAG00000004972) #30 BAIAP2 (ENSCLAG00000007010) #31 ENSCLAG00000010945 CHMP6 (ENSCLAG00000011436) #32 RPTOR (ENSCLAG00000008668) #33 NPTX1 (ENSCLAG00000005688) #35 ENDOV (ENSCLAG00000006305) RNF213 (ENSCLAG00000005957) SLC26A11 (ENSCLAG00000011253) SGSH (ENSCLAG00000013470) Degu DUPLICATION Degu MODERN SPECIES 88 DYRK2 (ENSODEG00000008824) ENSODEG00000008629 ENSODEG00000019564 CAND1 (ENSODEG00000006531) ENSODEG00000006471 GRIP1 (ENSODEG00000004813) HELB (ENSODEG00000004542) IRAK3 (ENSODEG00000004353) TMBIM4 (ENSODEG00000004306) ENSODEG00000004268 HMGA2 (ENSODEG00000004075) MSRB3 (ENSODEG00000004460) LEMD3 (ENSODEG00000004132) WIF1 (ENSODEG00000004030) ENSODEG00000006260 ENSODEG00000006151 #22 TBC1D30 (ENSODEG00000006065) ENSODEG00000019272 GNS (ENSODEG00000004924) RASSF3 (ENSODEG00000004894) TBK1 (ENSODEG00000004876) XPOT (ENSODEG00000004607) ENSODEG00000019051 C12orf56 (ENSODEG00000004449) KICS2 (ENSODEG00000004419) SRGAP1 (ENSODEG00000004511) RXYLT1 (ENSODEG00000004285) ENSODEG00000004274 ENSODEG00000004249 Degu MODERN SPECIES 182 ZFP62 (ENSODEG00000002735) ENSODEG00000002695 ENSODEG00000002686 ENSODEG00000002669 ENSODEG00000002655 ENSODEG00000018859 ENSODEG00000018905 TRIM7 (ENSODEG00000002621) ENSODEG00000018805 ENSODEG00000002285 ENSODEG00000002272 ENSODEG00000002257 RACK1 (ENSODEG00000002250) ENSODEG00000002234 ENSODEG00000002223 ENSODEG00000003108 #22 KIF5B (ENSODEG00000003045) ARHGAP12 (ENSODEG00000002709) ENSODEG00000002565 ZEB1 (ENSODEG00000002458) ZNF438 (ENSODEG00000002404) SVIL (ENSODEG00000004290) JCAD (ENSODEG00000003790) ENSODEG00000003767 ENSODEG00000003722 ENSODEG00000003690 BAMBI (ENSODEG00000003677) ENSODEG00000003656 ENSODEG00000004040 ENSODEG00000003912 ENSODEG00000003796 Degu MODERN SPECIES 93 MAL (ENSODEG00000006405) MRPS5 (ENSODEG00000006937) ZNF2 (ENSODEG00000005837) PROM2 (ENSODEG00000006749) KCNIP3 (ENSODEG00000007993) FAHD2A (ENSODEG00000006155) GPAT2 (ENSODEG00000006540) ASTL (ENSODEG00000006674) DUSP2 (ENSODEG00000006605) STARD7 (ENSODEG00000008185) TMEM127 (ENSODEG00000007316) CIAO1 (ENSODEG00000010429) SNRNP200 (ENSODEG00000008366) ENSODEG00000019261 ENSODEG00000006239 ##22 ENSODEG00000009431 #22 ITPRIPL1 (ENSODEG00000019718) NCAPH (ENSODEG00000007119) NEURL3 (ENSODEG00000006502) ARID5A (ENSODEG00000007125) KANSL3 (ENSODEG00000009383) ENSODEG00000006964 FER1L5 (ENSODEG00000007379) LMAN2L (ENSODEG00000007336) CNNM4 (ENSODEG00000008343) ENSODEG00000007080 ANKRD23 (ENSODEG00000007390) ANKRD39 (ENSODEG00000008651) SEMA4C (ENSODEG00000007356) ENSODEG00000007357 ACTR1B (ENSODEG00000006779) Sciuridae ANCESTRAL SPECIES 21 ENSGT00940000159064 ENSGT00520000055570.A.a ENSGT00940000161451 ENSGT00940000156270 ENSGT00390000009265 ENSGT00390000015948.b ENSGT01030000234642.a.a ENSGT00580000081628 ENSGT00940000159529 ENSGT00940000153352.B ENSGT00400000024767 ENSGT00940000155809 ENSGT00940000155257 ENSGT00940000154259.l.k.b ENSGT00940000157716 ENSGT00950000182960.a.a.a.b.eb #22 ENSGT01030000234563.b.a.b.b.a ENSGT01030000234563.b.a.b.b.b ENSGT00530000063534.b ENSGT01050000244827.D.b.b ENSGT00940000162030 ENSGT00940000155351 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000161242 ENSGT00940000156184 ENSGT00390000000909 ENSGT00940000157732 ENSGT00940000156696.B ENSGT01030000234610.b.a.b.b ENSGT01030000234610.b.a.b.a Eurasian red squirrel MODERN SPECIES 13 ADRA2A (ENSSVLG00005001340) ENSSVLG00005001373 BBIP1 (ENSSVLG00005001421) PDCD4 (ENSSVLG00005001456) RBM20 (ENSSVLG00005001496) ENSSVLG00005001542 SMC3 (ENSSVLG00005001560) DUSP5 (ENSSVLG00005001612) SMNDC1 (ENSSVLG00005001630) ENSSVLG00005001699 ENSSVLG00005001750 ADD3 (ENSSVLG00005001778) ENSSVLG00005001815 XPNPEP1 (ENSSVLG00005001845) ENSSVLG00005001899 ENSSVLG00005001943 #22 SORCS1 (ENSSVLG00005002050) SORCS3 (ENSSVLG00005002348) CFAP58 (ENSSVLG00005002434) ITPRIP (ENSSVLG00005002474) CFAP43 (ENSSVLG00005002510) ENSSVLG00005002622 COL17A1 (ENSSVLG00005002694) SLK (ENSSVLG00005002929) STN1 (ENSSVLG00005002979) ENSSVLG00005003038 NEURL1 (ENSSVLG00005003109) CALHM3 (ENSSVLG00005003127) CALHM1 (ENSSVLG00005003146) CALHM2 (ENSSVLG00005003154) PDCD11 (ENSSVLG00005003201) Marmotini ANCESTRAL SPECIES 16 ENSGT00940000161451 ENSGT00940000156270.i ENSGT01030000235307 ENSGT00940000156270.j ENSGT00390000009265 ENSGT00390000015948.b ENSGT01030000234642.a.a ENSGT00580000081628 ENSGT00940000159529 ENSGT00940000153352.B ENSGT00400000024767 ENSGT00940000155809 ENSGT00940000155257 ENSGT00940000154259.l.k.b ENSGT00940000157716 ENSGT00950000182960.a.a.a.b.eb #22 ENSGT01030000234563.b.a.b.b.a ENSGT01030000234563.b.a.b.b.b ENSGT00530000063534.b ENSGT01050000244827.D.b.b ENSGT00940000162030 ENSGT00940000155351 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000161242 ENSGT00940000156184 ENSGT00390000000909 ENSGT00940000157732 ENSGT00940000156696.B ENSGT01030000234610.b.a.b.b ENSGT01030000234610.b.a.b.a Alpin marmot MODERN SPECIES 39 ENSMMMG00000002171 ENSMMMG00000002162 PDCD4 (ENSMMMG00000002133) ENSMMMG00000002115 RBM20 (ENSMMMG00000002043) SMC3 (ENSMMMG00000002004) DUSP5 (ENSMMMG00000001986) ENSMMMG00000001972 SMNDC1 (ENSMMMG00000001963) ENSMMMG00000001959 MXI1 (ENSMMMG00000001946) ADD3 (ENSMMMG00000001707) ENSMMMG00000001684 XPNPEP1 (ENSMMMG00000001605) ENSMMMG00000001594 ENSMMMG00000001588 #22 SORCS1 (ENSMMMG00000001325) SORCS3 (ENSMMMG00000001241) CFAP58 (ENSMMMG00000001204) ITPRIP (ENSMMMG00000001191) GSTO2 (ENSMMMG00000001167) GSTO1 (ENSMMMG00000001145) ENSMMMG00000001103 CFAP43 (ENSMMMG00000000749) SFR1 (ENSMMMG00000000727) COL17A1 (ENSMMMG00000000492) SLK (ENSMMMG00000000361) STN1 (ENSMMMG00000000299) SH3PXD2A (ENSMMMG00000000203) NEURL1 (ENSMMMG00000000158) CALHM3 (ENSMMMG00000000131) Marmotini_b ANCESTRAL SPECIES 416 ENSGT00950000182960.a.a.a.b.eb #22 ENSGT01030000234563.b.a.b.b.a Squirrel DUPLICATION Squirrel MODERN SPECIES 376 ENSSTOG00000027012 #22 SORCS1 (ENSSTOG00000015654) Squirrel MODERN SPECIES 89 RMND1 (ENSSTOG00000013141) ARMT1 (ENSSTOG00000013153) CCDC170 (ENSSTOG00000013161) ESR1 (ENSSTOG00000006748) ENSSTOG00000030302 ENSSTOG00000006796 ENSSTOG00000034176 MYCT1 (ENSSTOG00000010644) VIP (ENSSTOG00000007656) FBXO5 (ENSSTOG00000029069) MTRF1L (ENSSTOG00000009980) RGS17 (ENSSTOG00000009988) OPRM1 (ENSSTOG00000000418) IPCEF1 (ENSSTOG00000000419) CNKSR3 (ENSSTOG00000029212) ENSSTOG00000025472 #22 ENSSTOG00000029860 SCAF8 (ENSSTOG00000026043) TIAM2 (ENSSTOG00000000784) TFB1M (ENSSTOG00000026264) CLDN20 (ENSSTOG00000000795) NOX3 (ENSSTOG00000000798) ENSSTOG00000031965 ARID1B (ENSSTOG00000015979) TMEM242 (ENSSTOG00000021519) ZDHHC14 (ENSSTOG00000024545) SNX9 (ENSSTOG00000010620) SYNJ2 (ENSSTOG00000016474) SERAC1 (ENSSTOG00000016478) GTF2H5 (ENSSTOG00000003476) TULP4 (ENSSTOG00000006169) Squirrel MODERN SPECIES 185 BET1 (ENSSTOG00000028826) COL1A2 (ENSSTOG00000010792) CASD1 (ENSSTOG00000010829) SGCE (ENSSTOG00000001868) PEG10 (ENSSTOG00000022801) ENSSTOG00000026064 #22 ENSSTOG00000030680 ENSSTOG00000029077 PON1 (ENSSTOG00000011900) PON3 (ENSSTOG00000025896) PON2 (ENSSTOG00000011912) ASB4 (ENSSTOG00000026077) Pdk4 (ENSSTOG00000021060) DYNC1I1 (ENSSTOG00000008078) SLC25A13 (ENSSTOG00000008106) SEM1 (ENSSTOG00000011501) DLX6 (ENSSTOG00000020785) DLX5 (ENSSTOG00000005162) ENSSTOG00000034315 ENSSTOG00000034550 TAC1 (ENSSTOG00000005410) Rodentia_B ANCESTRAL SPECIES 1 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.eb #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 Myomorpha ANCESTRAL SPECIES ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.eb #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 Muroidea ANCESTRAL SPECIES ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.eb #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 Muroidea_A ANCESTRAL SPECIES 1 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.eb #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 Murinae ANCESTRAL SPECIES 6 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.eb #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 ENSGT00940000160777 Mus ANCESTRAL SPECIES 2 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.eb #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 ENSGT00940000160777 Shrew mouse MODERN SPECIES 5 Ppp1r27 (MGP_PahariEiJ_G0018652) #10 Mcrip1 (MGP_PahariEiJ_G0018651) Gcgr (MGP_PahariEiJ_G0018650) Slc25a10 (MGP_PahariEiJ_G0018649) #11 Mrpl12 (MGP_PahariEiJ_G0018648) #12 Hgs (MGP_PahariEiJ_G0018647) #13 Arl16 (MGP_PahariEiJ_G0018646) #14 Ccdc137 (MGP_PahariEiJ_G0018645) #15 Oxld1 (MGP_PahariEiJ_G0018644) #16 Pde6g (MGP_PahariEiJ_G0018643) #17 Tspan10 (MGP_PahariEiJ_G0018642) #18 Nploc4 (MGP_PahariEiJ_G0018641) #19 Faap100 (MGP_PahariEiJ_G0018640) #20 Fscn2 (MGP_PahariEiJ_G0018639) #21 MGP_PahariEiJ_G0018638 MGP_PahariEiJ_G0018637 #22 Bahcc1 (MGP_PahariEiJ_G0018636) #23 Slc38a10 (MGP_PahariEiJ_G0018635) #25 Tepsin (MGP_PahariEiJ_G0018634) #27 Cep131 (MGP_PahariEiJ_G0018633) #28 Aatk (MGP_PahariEiJ_G0018632) #30 Baiap2 (MGP_PahariEiJ_G0018631) #31 Chmp6 (MGP_PahariEiJ_G0018630) #32 Rptor (MGP_PahariEiJ_G0018629) #33 Nptx1 (MGP_PahariEiJ_G0018628) #35 Endov (MGP_PahariEiJ_G0018627) Rnf213 (MGP_PahariEiJ_G0018626) Slc26a11 (MGP_PahariEiJ_G0018625) Sgsh (MGP_PahariEiJ_G0018624) Card14 (MGP_PahariEiJ_G0018623) MGP_PahariEiJ_G0018622 Mus_A ANCESTRAL SPECIES 2 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.eb #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 ENSGT00940000160777 Ryukyu mouse MODERN SPECIES 2 Ppp1r27 (MGP_CAROLIEiJ_G0017526) #10 Mcrip1 (MGP_CAROLIEiJ_G0017525) Gcgr (MGP_CAROLIEiJ_G0017524) Slc25a10 (MGP_CAROLIEiJ_G0017523) #11 Mrpl12 (MGP_CAROLIEiJ_G0017522) #12 Hgs (MGP_CAROLIEiJ_G0017521) #13 Arl16 (MGP_CAROLIEiJ_G0017520) #14 Ccdc137 (MGP_CAROLIEiJ_G0017519) #15 Oxld1 (MGP_CAROLIEiJ_G0017518) #16 Pde6g (MGP_CAROLIEiJ_G0017517) #17 Tspan10 (MGP_CAROLIEiJ_G0017516) #18 Nploc4 (MGP_CAROLIEiJ_G0017515) #19 Faap100 (MGP_CAROLIEiJ_G0017514) #20 Fscn2 (MGP_CAROLIEiJ_G0017513) #21 MGP_CAROLIEiJ_G0017512 Actg1 (MGP_CAROLIEiJ_G0017511) #22 Bahcc1 (MGP_CAROLIEiJ_G0017510) #23 Slc38a10 (MGP_CAROLIEiJ_G0017509) #25 Ndufaf8 (MGP_CAROLIEiJ_G0017508) #26 Tepsin (MGP_CAROLIEiJ_G0017507) #27 Cep131 (MGP_CAROLIEiJ_G0017506) #28 Aatk (MGP_CAROLIEiJ_G0017505) #30 Baiap2 (MGP_CAROLIEiJ_G0017504) #31 Chmp6 (MGP_CAROLIEiJ_G0017503) #32 Rptor (MGP_CAROLIEiJ_G0017502) #33 Nptx1 (MGP_CAROLIEiJ_G0017501) #35 Endov (MGP_CAROLIEiJ_G0017500) MGP_CAROLIEiJ_G0017499 Slc26a11 (MGP_CAROLIEiJ_G0017498) Sgsh (MGP_CAROLIEiJ_G0017497) Card14 (MGP_CAROLIEiJ_G0017496) Mus_B ANCESTRAL SPECIES 2 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.eb #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 ENSGT00940000160777 Mouse MODERN SPECIES 2 P4hb (ENSMUSG00000025130) #9 Ppp1r27 (ENSMUSG00000025129) #10 Mcrip1 (ENSMUSG00000061111) Gcgr (ENSMUSG00000025127) Slc25a10 (ENSMUSG00000025792) #11 Mrpl12 (ENSMUSG00000039640) #12 Hgs (ENSMUSG00000025793) #13 Arl16 (ENSMUSG00000057594) #14 Ccdc137 (ENSMUSG00000049957) #15 Oxld1 (ENSMUSG00000039670) #16 Pde6g (ENSMUSG00000025386) #17 Tspan10 (ENSMUSG00000039691) #18 Nploc4 (ENSMUSG00000039703) #19 Faap100 (ENSMUSG00000025384) #20 Fscn2 (ENSMUSG00000025380) #21 Actg1 (ENSMUSG00000062825) #22 Bahcc1 (ENSMUSG00000039741) #23 Slc38a10 (ENSMUSG00000061306) #25 Ndufaf8 (ENSMUSG00000078572) #26 Tepsin (ENSMUSG00000025377) #27 Cep131 (ENSMUSG00000039781) #28 Aatk (ENSMUSG00000025375) #30 Baiap2 (ENSMUSG00000025372) #31 Chmp6 (ENSMUSG00000025371) #32 ENSMUSG00000121577 Rptor (ENSMUSG00000025583) #33 Nptx1 (ENSMUSG00000025582) #35 Endov (ENSMUSG00000039850) Rnf213 (ENSMUSG00000070327) Slc26a11 (ENSMUSG00000039908) Sgsh (ENSMUSG00000005043) Mus_C ANCESTRAL SPECIES 21 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.eb #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 ENSGT00940000160777 Steppe mouse DUPLICATION Steppe mouse DUPLICATION Steppe mouse MODERN SPECIES 483 ENSMSIG00000003617 #22 Steppe mouse MODERN SPECIES 455 ENSMSIG00000003086 #22 Steppe mouse MODERN SPECIES 3195 P4hb (ENSMSIG00000014074) #9 Ppp1r27 (ENSMSIG00000014115) #10 ENSMSIG00000014124 Gcgr (ENSMSIG00000014132) Slc25a10 (ENSMSIG00000014201) #11 Mrpl12 (ENSMSIG00000014251) #12 Hgs (ENSMSIG00000014278) #13 Arl16 (ENSMSIG00000014355) #14 ENSMSIG00000014376 #15 Oxld1 (ENSMSIG00000014392) #16 Pde6g (ENSMSIG00000014399) #17 Tspan10 (ENSMSIG00000014412) #18 Nploc4 (ENSMSIG00000014422) #19 Faap100 (ENSMSIG00000014480) #20 Fscn2 (ENSMSIG00000014526) #21 ENSMSIG00000014544 #22 Bahcc1 (ENSMSIG00000014611) #23 Slc38a10 (ENSMSIG00000014731) #25 Ndufaf8 (ENSMSIG00000015188) #26 Tepsin (ENSMSIG00000015205) #27 Cep131 (ENSMSIG00000015338) #28 Aatk (ENSMSIG00000015476) #30 Baiap2 (ENSMSIG00000015527) #31 Chmp6 (ENSMSIG00000015649) #32 Rptor (ENSMSIG00000015682) #33 Nptx1 (ENSMSIG00000016091) #35 Endov (ENSMSIG00000016120) Rnf213 (ENSMSIG00000016192) Slc26a11 (ENSMSIG00000016447) Sgsh (ENSMSIG00000016471) Card14 (ENSMSIG00000016494) Rat DUPLICATION Rat MODERN SPECIES 4 Mrps14 (ENSRNOG00000002569) Cacybp (ENSRNOG00000002572) Rabgap1l (ENSRNOG00000002736) AABR07007905.2 (ENSRNOG00000053229) Gpr52 (ENSRNOG00000055673) Rc3h1 (ENSRNOG00000002750) Serpinc1 (ENSRNOG00000002783) Zbtb37 (ENSRNOG00000026907) Dars2 (ENSRNOG00000002813) Cenpl (ENSRNOG00000038789) Klhl20 (ENSRNOG00000002875) Slc9c2 (ENSRNOG00000002890) Tex50 (ENSRNOG00000038786) Slc9c2 (ENSRNOG00000026797) Prdx6 (ENSRNOG00000066585) AABR07021573.2 (ENSRNOG00000026917) #22 Tnfsf4 (ENSRNOG00000002968) Tnfsf18 (ENSRNOG00000026607) ENSRNOG00000070334 Faslg (ENSRNOG00000002978) Suco (ENSRNOG00000026542) Pigc (ENSRNOG00000026497) RGD1309106 (ENSRNOG00000026523) Dnm3 (ENSRNOG00000026490) AABR07021591.1 (ENSRNOG00000029459) Mettl13 (ENSRNOG00000003042) Vamp4 (ENSRNOG00000003071) Myoc (ENSRNOG00000003221) ENSRNOG00000066215 Prrc2c (ENSRNOG00000068743) Fmo4 (ENSRNOG00000003400) Rat MODERN SPECIES 14 Tmf1 (ENSRNOG00000056462) Uba3 (ENSRNOG00000006221) Arl6ip5 (ENSRNOG00000006818) Lmod3 (ENSRNOG00000032443) Frmd4b (ENSRNOG00000007764) Mitf (ENSRNOG00000008658) Mdfic2 (ENSRNOG00000064294) Foxp1 (ENSRNOG00000009184) Eif4e3 (ENSRNOG00000010301) Gpr27 (ENSRNOG00000010880) Ier3ip1-ps1 (ENSRNOG00000030004) Prok2 (ENSRNOG00000010898) LOC120102174 (ENSRNOG00000033673) LOC120102351 (ENSRNOG00000005353) Shq1 (ENSRNOG00000005433) Actg1-ps9 (ENSRNOG00000062691) #22 Gxylt2 (ENSRNOG00000005621) Ppp4r2 (ENSRNOG00000024647) Pdzrn3 (ENSRNOG00000057556) Cntn3 (ENSRNOG00000006144) Chl1 (ENSRNOG00000045771) ENSRNOG00000065903 AABR07061614.1 (ENSRNOG00000032820) Cntn6 (ENSRNOG00000032517) Cntn4 (ENSRNOG00000005652) Il5ra (ENSRNOG00000005954) Trnt1 (ENSRNOG00000006432) Crbn (ENSRNOG00000006534) Lrrn1 (ENSRNOG00000006802) Setmar (ENSRNOG00000006806) Sumf1 (ENSRNOG00000006813) Rat MODERN SPECIES 1 P4hb (ENSRNOG00000036689) #9 Ppp1r27 (ENSRNOG00000036690) #10 Mcrip1 (ENSRNOG00000036691) Gcgr (ENSRNOG00000036692) Slc25a10 (ENSRNOG00000036693) #11 Mrpl12 (ENSRNOG00000036695) #12 Hgs (ENSRNOG00000036696) #13 Arl16 (ENSRNOG00000049235) #14 Ccdc137 (ENSRNOG00000048712) #15 Oxld1 (ENSRNOG00000047517) #16 Pde6g (ENSRNOG00000069361) #17 Tspan10 (ENSRNOG00000046076) #18 Nploc4 (ENSRNOG00000036698) #19 Faap100 (ENSRNOG00000036699) #20 Fscn2 (ENSRNOG00000036700) #21 Actg1 (ENSRNOG00000036701) #22 Bahcc1 (ENSRNOG00000043102) #23 ENSRNOG00000065844 Slc38a10 (ENSRNOG00000004604) #25 Tepsin (ENSRNOG00000028161) #27 Cep131 (ENSRNOG00000004430) #28 Aatk (ENSRNOG00000004392) #30 Baiap2 (ENSRNOG00000004049) #31 Chmp6 (ENSRNOG00000004014) #32 Rptor (ENSRNOG00000003821) #33 AABR07030911.1 (ENSRNOG00000032442) Nptx1 (ENSRNOG00000003741) #35 Endov (ENSRNOG00000003699) Rnf213 (ENSRNOG00000029658) Slc26a11 (ENSRNOG00000030537) Sgsh (ENSRNOG00000064880) Cricetidae ANCESTRAL SPECIES ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.eb #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 Cricetinae ANCESTRAL SPECIES ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.eb #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 ENSGT00940000160777 Chinese hamster chok1gshd DUPLICATION Chinese hamster chok1gshd MODERN SPECIES 316 Cyp26b1 (ENSCGRG00001020337) Dysf (ENSCGRG00001019260) Zfp638 (ENSCGRG00001021120) Paip2b (ENSCGRG00001023477) Nagk (ENSCGRG00001000133) Tex261 (ENSCGRG00001000762) Ankrd53 (ENSCGRG00001001279) Atp6v1b1 (ENSCGRG00001003157) Vax2 (ENSCGRG00001004470) Cd207 (ENSCGRG00001005653) Clec4f (ENSCGRG00001006612) Figla (ENSCGRG00001006982) Add2 (ENSCGRG00001009137) ENSCGRG00001014385 Tgfa (ENSCGRG00001011267) ENSCGRG00001015506 #22 Fam136a (ENSCGRG00001011562) ENSCGRG00001011831 Pcyox1 (ENSCGRG00001012244) Tia1 (ENSCGRG00001013417) C87436 (ENSCGRG00001015385) Pcbp1 (ENSCGRG00001015078) Asprv1 (ENSCGRG00001015269) Mxd1 (ENSCGRG00001004148) ENSCGRG00001006039 Gmcl1 (ENSCGRG00001009405) Anxa4 (ENSCGRG00001010596) Aak1 (ENSCGRG00001013936) Nfu1 (ENSCGRG00001016144) ENSCGRG00001016926 Chinese hamster chok1gshd MODERN SPECIES 33 P4hb (ENSCGRG00001013338) #9 Ppp1r27 (ENSCGRG00001017436) #10 Mcrip1 (ENSCGRG00001015558) Gcgr (ENSCGRG00001002021) Slc25a10 (ENSCGRG00001011885) #11 Mrpl12 (ENSCGRG00001005393) #12 Hgs (ENSCGRG00001012073) #13 Arl16 (ENSCGRG00001019590) #14 Ccdc137 (ENSCGRG00001014661) #15 Oxld1 (ENSCGRG00001011365) #16 Pde6g (ENSCGRG00001020369) #17 Tspan10 (ENSCGRG00001016047) #18 Nploc4 (ENSCGRG00001002455) #19 Faap100 (ENSCGRG00001019784) #20 Fscn2 (ENSCGRG00001025013) #21 ENSCGRG00001018151 #22 Bahcc1 (ENSCGRG00001007507) #23 Slc38a10 (ENSCGRG00001010022) #25 Ndufaf8 (ENSCGRG00001013223) #26 Tepsin (ENSCGRG00001013742) #27 Cep131 (ENSCGRG00001001607) #28 Aatk (ENSCGRG00001024210) #30 BAIAP2 (ENSCGRG00001000617) #31 ENSCGRG00001023222 #32 Rptor (ENSCGRG00001011960) #33 Nptx1 (ENSCGRG00001024269) #35 Endov (ENSCGRG00001000788) Rnf213 (ENSCGRG00001011097) Slc26a11 (ENSCGRG00001011926) Sgsh (ENSCGRG00001023288) Card14 (ENSCGRG00001012254) Cricetidae_B ANCESTRAL SPECIES ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b.eb #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 Northern American deer mouse MODERN SPECIES 21 Ppp1r27 (ENSPEMG00000009995) #10 Mcrip1 (ENSPEMG00000030186) Gcgr (ENSPEMG00000018876) Slc25a10 (ENSPEMG00000013208) #11 Mrpl12 (ENSPEMG00000005848) #12 Hgs (ENSPEMG00000017135) #13 Arl16 (ENSPEMG00000030750) #14 Ccdc137 (ENSPEMG00000019141) #15 Oxld1 (ENSPEMG00000012364) #16 Pde6g (ENSPEMG00000030931) #17 Tspan10 (ENSPEMG00000013391) #18 ENSPEMG00000027189 Nploc4 (ENSPEMG00000018717) #19 Faap100 (ENSPEMG00000017629) #20 Fscn2 (ENSPEMG00000028380) #21 Actg1 (ENSPEMG00000014871) #22 Bahcc1 (ENSPEMG00000010228) #23 Slc38a10 (ENSPEMG00000008379) #25 Ndufaf8 (ENSPEMG00000019251) #26 Tepsin (ENSPEMG00000017939) #27 Cep131 (ENSPEMG00000017173) #28 Aatk (ENSPEMG00000010287) #30 Baiap2 (ENSPEMG00000017989) #31 Chmp6 (ENSPEMG00000011607) #32 Rptor (ENSPEMG00000017853) #33 Nptx1 (ENSPEMG00000029988) #35 ENSPEMG00000027286 #37 Endov (ENSPEMG00000009075) Prairie vole DUPLICATION Prairie vole MODERN SPECIES 148 P2ry10b (ENSMOCG00000012027) P2ry10 (ENSMOCG00000014359) Lpar4 (ENSMOCG00000015702) Rtl3 (ENSMOCG00000017247) Cysltr1 (ENSMOCG00000001518) ENSMOCG00000011961 ENSMOCG00000015345 ENSMOCG00000017397 ENSMOCG00000000983 ENSMOCG00000010730 Atp7a (ENSMOCG00000002028) Cox7b (ENSMOCG00000000328) Magt1 (ENSMOCG00000005129) ENSMOCG00000015369 #22 ENSMOCG00000016097 ENSMOCG00000000200 ENSMOCG00000003086 Fgf16 (ENSMOCG00000015918) ENSMOCG00000016424 Prairie vole MODERN SPECIES 15 P4hb (ENSMOCG00000016072) #9 Ppp1r27 (ENSMOCG00000015295) #10 Mcrip1 (ENSMOCG00000016260) Gcgr (ENSMOCG00000021695) Slc25a10 (ENSMOCG00000018423) #11 Mrpl12 (ENSMOCG00000019919) #12 Hgs (ENSMOCG00000018462) #13 Arl16 (ENSMOCG00000019090) #14 Ccdc137 (ENSMOCG00000017204) #15 Oxld1 (ENSMOCG00000015599) #16 Pde6g (ENSMOCG00000020679) #17 Tspan10 (ENSMOCG00000021367) #18 Nploc4 (ENSMOCG00000017904) #19 Faap100 (ENSMOCG00000020709) #20 Fscn2 (ENSMOCG00000018078) #21 Actg1 (ENSMOCG00000014482) #22 Bahcc1 (ENSMOCG00000021502) #23 Slc38a10 (ENSMOCG00000022252) #25 Ndufaf8 (ENSMOCG00000016844) #26 Tepsin (ENSMOCG00000021768) #27 Cep131 (ENSMOCG00000020255) #28 Aatk (ENSMOCG00000015429) #30 Baiap2 (ENSMOCG00000020159) #31 Chmp6 (ENSMOCG00000021631) #32 Rptor (ENSMOCG00000016741) #33 Nptx1 (ENSMOCG00000014439) #35 Endov (ENSMOCG00000019008) ENSMOCG00000019834 Slc26a11 (ENSMOCG00000020062) Sgsh (ENSMOCG00000015561) Card14 (ENSMOCG00000019143) Lesser Egyptian jerboa DUPLICATION Lesser Egyptian jerboa MODERN SPECIES 67 Ing3 (ENSJJAG00000007662) Tspan12 (ENSJJAG00000006214) Kcnd2 (ENSJJAG00000000160) ENSJJAG00000019540 ENSJJAG00000016745 ENSJJAG00000011628 Lsm8 (ENSJJAG00000009031) ENSJJAG00000003447 Cttnbp2 (ENSJJAG00000013148) ENSJJAG00000022583 Asz1 (ENSJJAG00000022495) Wnt2 (ENSJJAG00000017203) St7 (ENSJJAG00000004440) ENSJJAG00000021128 Met (ENSJJAG00000012125) ENSJJAG00000000187 #22 Cav1 (ENSJJAG00000021423) Cav2 (ENSJJAG00000020789) ENSJJAG00000019082 Tfec (ENSJJAG00000015649) ENSJJAG00000012867 Mdfic (ENSJJAG00000012683) ENSJJAG00000016852 Ppp1r3a (ENSJJAG00000014929) ENSJJAG00000012600 ENSJJAG00000011795 Grid2 (ENSJJAG00000010736) Atoh1 (ENSJJAG00000001013) ENSJJAG00000023468 Smarcad1 (ENSJJAG00000022342) Hpgds (ENSJJAG00000020796) Lesser Egyptian jerboa MODERN SPECIES 56 Sost (ENSJJAG00000015417) Meox1 (ENSJJAG00000016085) Etv4 (ENSJJAG00000016456) Dhx8 (ENSJJAG00000017249) Slc25a10 (ENSJJAG00000016619) #11 Mrpl12 (ENSJJAG00000018729) #12 Hgs (ENSJJAG00000016995) #13 Arl16 (ENSJJAG00000017274) #14 Ccdc137 (ENSJJAG00000015673) #15 Oxld1 (ENSJJAG00000017091) #16 Pde6g (ENSJJAG00000015938) #17 Tspan10 (ENSJJAG00000022102) #18 Nploc4 (ENSJJAG00000017733) #19 Faap100 (ENSJJAG00000015909) #20 Fscn2 (ENSJJAG00000015122) #21 Actg1 (ENSJJAG00000015963) #22 Bahcc1 (ENSJJAG00000018500) #23 ENSJJAG00000015310 #25 Ndufaf8 (ENSJJAG00000015894) #26 Tepsin (ENSJJAG00000019267) #27 Cep131 (ENSJJAG00000017120) #28 Aatk (ENSJJAG00000014858) #30 Baiap2 (ENSJJAG00000015834) #31 ENSJJAG00000016138 Rptor (ENSJJAG00000016104) #33 Nptx1 (ENSJJAG00000015858) #35 ENSJJAG00000014912 ENSJJAG00000015329 Slc26a11 (ENSJJAG00000016429) Sgsh (ENSJJAG00000017841) Card14 (ENSJJAG00000021113) Lagomorpha ANCESTRAL SPECIES 173 ENSGT00390000014547.c ENSGT00960000187139 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00950000183157.a.a.b ##21 ENSGT00510000048032 ENSGT00950000182960.a.a.a.b #22 ENSGT00390000015109 ENSGT00940000157099 Pika MODERN SPECIES 5565 ENSOPRG00000009232 #22 Rabbit DUPLICATION Rabbit MODERN SPECIES 611 ZNF853 (ENSOCUG00000032099) ZNF316 (ENSOCUG00000029271) ENSOCUG00000029406 ZNF12 (ENSOCUG00000008958) ENSOCUG00000024978 RBAK (ENSOCUG00000016907) ENSOCUG00000027378 ##21 RNF216 (ENSOCUG00000015794) ENSOCUG00000005867 #22 FBXL18 (ENSOCUG00000006567) TNRC18 (ENSOCUG00000000980) Rabbit MODERN SPECIES 18 ENSOCUG00000032587 ENSOCUG00000038204 LRP1B (ENSOCUG00000017165) ENSOCUG00000032003 ENSOCUG00000024326 KYNU (ENSOCUG00000006194) ARHGAP15 (ENSOCUG00000000471) GTDC1 (ENSOCUG00000002102) ENSOCUG00000038697 ZEB2 (ENSOCUG00000027880) ENSOCUG00000030462 ACVR2A (ENSOCUG00000016398) ORC4 (ENSOCUG00000016412) MBD5 (ENSOCUG00000010432) ENSOCUG00000033587 ENSOCUG00000034178 #22 EPC2 (ENSOCUG00000012712) KIF5C (ENSOCUG00000009699) LYPD6B (ENSOCUG00000008346) ENSOCUG00000030777 LYPD6 (ENSOCUG00000008118) MMADHC (ENSOCUG00000008124) RND3 (ENSOCUG00000001751) ENSOCUG00000036417 ENSOCUG00000025786 RBM43 (ENSOCUG00000026185) NMI (ENSOCUG00000001001) ENSOCUG00000038635 TNFAIP6 (ENSOCUG00000013688) RIF1 (ENSOCUG00000017435) ENSOCUG00000035924 Rabbit MODERN SPECIES 8 MIPOL1 (ENSOCUG00000003198) ENSOCUG00000035224 TTC6 (ENSOCUG00000015486) ENSOCUG00000030860 SSTR1 (ENSOCUG00000008670) CLEC14A (ENSOCUG00000008676) ENSOCUG00000038820 SEC23A (ENSOCUG00000009925) GEMIN2 (ENSOCUG00000000673) TRAPPC6B (ENSOCUG00000002171) ENSOCUG00000027948 PNN (ENSOCUG00000002176) ENSOCUG00000004700 FBXO33 (ENSOCUG00000002494) ENSOCUG00000038774 ACTG1 (ENSOCUG00000010443) #22 LRFN5 (ENSOCUG00000006290) ENSOCUG00000036762 ENSOCUG00000038158 ENSOCUG00000010014 ENSOCUG00000031408 ENSOCUG00000008733 KLHL28 (ENSOCUG00000006372) TOGARAM1 (ENSOCUG00000006378) PRPF39 (ENSOCUG00000007531) ENSOCUG00000007535 FANCM (ENSOCUG00000007539) MIS18BP1 (ENSOCUG00000007550) ENSOCUG00000007451 ENSOCUG00000035475 ENSOCUG00000027427 Laurasiatheria ANCESTRAL SPECIES 4 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00910000147524 #36 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C Eulipotyphla ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b #22 Common shrew MODERN SPECIES 13487 ENSSARG00000012197 #22 Laurasiatheria_a ANCESTRAL SPECIES 4 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00910000147524 #36 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C Artiodactyla ANCESTRAL SPECIES 74 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 Suina ANCESTRAL SPECIES ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927.f.a #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Chacoan peccary MODERN SPECIES 824 SLC25A10 (ENSCWAG00000019418) #11 MRPL12 (ENSCWAG00000019479) #12 HGS (ENSCWAG00000019513) #13 ARL16 (ENSCWAG00000019551) #14 CCDC137 (ENSCWAG00000019573) #15 OXLD1 (ENSCWAG00000019586) #16 PDE6G (ENSCWAG00000019599) #17 TSPAN10 (ENSCWAG00000019614) #18 NPLOC4 (ENSCWAG00000019639) #19 FAAP100 (ENSCWAG00000019681) #20 FSCN2 (ENSCWAG00000019701) #21 ACTG1 (ENSCWAG00000019722) #22 BAHCC1 (ENSCWAG00000019765) #23 Pig MODERN SPECIES 3 P4HB (ENSSSCG00000039148) #9 PPP1R27 (ENSSSCG00000037039) #10 MCRIP1 (ENSSSCG00000039424) GCGR (ENSSSCG00000034891) SLC25A10 (ENSSSCG00000033620) #11 MRPL12 (ENSSSCG00000033148) #12 HGS (ENSSSCG00000033082) #13 ARL16 (ENSSSCG00000053661) #14 CCDC137 (ENSSSCG00000034716) #15 OXLD1 (ENSSSCG00000033788) #16 PDE6G (ENSSSCG00000053315) #17 TSPAN10 (ENSSSCG00000031531) #18 NPLOC4 (ENSSSCG00000024235) #19 FAAP100 (ENSSSCG00000029616) #20 FSCN2 (ENSSSCG00000052003) #21 ACTG1 (ENSSSCG00000028355) #22 BAHCC1 (ENSSSCG00000023045) #23 SLC38A10 (ENSSSCG00000022317) #25 NDUFAF8 (ENSSSCG00000039183) #26 TEPSIN (ENSSSCG00000028593) #27 CEP131 (ENSSSCG00000017143) #28 PVALEF (ENSSSCG00000039849) #29 AATK (ENSSSCG00000017141) #30 BAIAP2 (ENSSSCG00000017142) #31 CHMP6 (ENSSSCG00000017140) #32 RPTOR (ENSSSCG00000017139) #33 NPTX1 (ENSSSCG00000017144) #35 ENDOV (ENSSSCG00000030277) ENSSSCG00000055162 ENSSSCG00000044501 ENSSSCG00000017146 Artiodactyla_a ANCESTRAL SPECIES 77 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 Camelidae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b #22 Alpaca MODERN SPECIES 4448 ENSVPAG00000002951 #22 Arabian camel MODERN SPECIES 2 C10orf120 (ENSCDRG00005008312) ENSCDRG00005008358 ENSCDRG00005008386 ENSCDRG00005008442 ENSCDRG00005008546 ENSCDRG00005008578 HTRA1 (ENSCDRG00005008605) ENSCDRG00005008651 PLEKHA1 (ENSCDRG00005008676) BTBD16 (ENSCDRG00005008822) TACC2 (ENSCDRG00005009143) NSMCE4A (ENSCDRG00005013236) ENSCDRG00005013283 ATE1 (ENSCDRG00005013374) FGFR2 (ENSCDRG00005014046) ENSCDRG00005014853 #22 WDR11 (ENSCDRG00005014918) PLPP4 (ENSCDRG00005015079) SEC23IP (ENSCDRG00005015175) MCMBP (ENSCDRG00005015289) INPP5F (ENSCDRG00005015415) ENSCDRG00005015966 BAG3 (ENSCDRG00005016010) TIAL1 (ENSCDRG00005016058) RGS10 (ENSCDRG00005016243) GRK5 (ENSCDRG00005016297) PRDX3 (ENSCDRG00005016447) SFXN4 (ENSCDRG00005016498) DENND10 (ENSCDRG00005016616) EIF3A (ENSCDRG00005016694) CACUL1 (ENSCDRG00005016843) Artiodactyla_b ANCESTRAL SPECIES 3 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927.e #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00910000147524 #36 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C Cetacea ANCESTRAL SPECIES 5 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327.a #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927.f.a #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 Blue whale MODERN SPECIES 12 P4HB (ENSBMSG00010017152) #9 PPP1R27 (ENSBMSG00010017128) #10 ENSBMSG00010017059 GCGR (ENSBMSG00010016997) SLC25A10 (ENSBMSG00010016936) #11 MRPL12 (ENSBMSG00010016896) #12 HGS (ENSBMSG00010016791) #13 ARL16 (ENSBMSG00010016743) #14 CCDC137 (ENSBMSG00010016685) #15 ENSBMSG00010016649 #16 PDE6G (ENSBMSG00010016623) #17 TSPAN10 (ENSBMSG00010016370) #18 NPLOC4 (ENSBMSG00010016260) #19 FAAP100 (ENSBMSG00010016216) #20 FSCN2 (ENSBMSG00010016184) #21 ACTG1 (ENSBMSG00010016154) #22 BAHCC1 (ENSBMSG00010016109) #23 SLC38A10 (ENSBMSG00010015979) #25 ENSBMSG00010015950 #26 TEPSIN (ENSBMSG00010015895) #27 CEP131 (ENSBMSG00010015760) #28 PVALEF (ENSBMSG00010015690) #29 AATK (ENSBMSG00010015075) #30 BAIAP2 (ENSBMSG00010014770) #31 CHMP6 (ENSBMSG00010014665) #32 RPTOR (ENSBMSG00010014591) #33 NPTX1 (ENSBMSG00010014454) #35 ENDOV (ENSBMSG00010021630) RNF213 (ENSBMSG00010021575) SLC26A11 (ENSBMSG00010021555) SGSH (ENSBMSG00010021525) Odontoceti ANCESTRAL SPECIES 16 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327.a #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927.f.a #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 Sperm whale MODERN SPECIES 122 OXLD1 (ENSPCTG00005021526) #16 PDE6G (ENSPCTG00005021535) #17 TSPAN10 (ENSPCTG00005021551) #18 NPLOC4 (ENSPCTG00005021563) #19 ENSPCTG00005021608 #20 FAAP100 (ENSPCTG00005021622) #20 FSCN2 (ENSPCTG00005021638) #21 ACTG1 (ENSPCTG00005021661) #22 Odontoceti_a ANCESTRAL SPECIES 14 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327.a #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927.f.a #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 Dolphin MODERN SPECIES 2322 NPLOC4 (ENSTTRG00000006439) #19 FAAP100 (ENSTTRG00000006437) #20 FSCN2 (ENSTTRG00000006435) #21 ACTG1 (ENSTTRG00000006433) #22 Odontoceti_b ANCESTRAL SPECIES 16 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000154268.e.a.w.b ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327.a #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927.f.a #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880.c ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 Vaquita MODERN SPECIES 12 PPP1R27 (ENSPSNG00000014100) #10 MCRIP1 (ENSPSNG00000014195) GCGR (ENSPSNG00000014383) ENSPSNG00000014572 SLC25A10 (ENSPSNG00000014601) #11 MRPL12 (ENSPSNG00000014673) #12 HGS (ENSPSNG00000014734) #13 ENSPSNG00000014786 #14 CCDC137 (ENSPSNG00000014847) #15 OXLD1 (ENSPSNG00000014909) #16 PDE6G (ENSPSNG00000014939) #17 TSPAN10 (ENSPSNG00000015042) #18 NPLOC4 (ENSPSNG00000015436) #19 FAAP100 (ENSPSNG00000015599) #20 FSCN2 (ENSPSNG00000015630) #21 ACTG1 (ENSPSNG00000015703) #22 BAHCC1 (ENSPSNG00000015818) #23 SLC38A10 (ENSPSNG00000016962) #25 ENSPSNG00000017052 TEPSIN (ENSPSNG00000017112) #27 CEP131 (ENSPSNG00000017201) #28 PVALEF (ENSPSNG00000017256) #29 AATK (ENSPSNG00000017380) #30 BAIAP2 (ENSPSNG00000017998) #31 ENSPSNG00000018244 CHMP6 (ENSPSNG00000018270) #32 RPTOR (ENSPSNG00000018324) #33 NPTX1 (ENSPSNG00000018520) #35 ENSPSNG00000018602 RNF213 (ENSPSNG00000018940) SLC26A11 (ENSPSNG00000020026) Monodontidae ANCESTRAL SPECIES 16 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000154268.e.a.w.b ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327.a #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927.f.a #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880.c ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 Beluga whale MODERN SPECIES 26 PPP1R27 (ENSDLEG00000003347) #10 ENSDLEG00000003358 GCGR (ENSDLEG00000003371) ENSDLEG00000003375 SLC25A10 (ENSDLEG00000003389) #11 MRPL12 (ENSDLEG00000003392) #12 HGS (ENSDLEG00000003399) #13 ARL16 (ENSDLEG00000003423) #14 CCDC137 (ENSDLEG00000003427) #15 ENSDLEG00000003430 #16 PDE6G (ENSDLEG00000003433) #17 TSPAN10 (ENSDLEG00000003436) #18 NPLOC4 (ENSDLEG00000003440) #19 FAAP100 (ENSDLEG00000003454) #20 FSCN2 (ENSDLEG00000003461) #21 ACTG1 (ENSDLEG00000003467) #22 BAHCC1 (ENSDLEG00000003483) #23 SLC38A10 (ENSDLEG00000003527) #25 NDUFAF8 (ENSDLEG00000003551) #26 TEPSIN (ENSDLEG00000003559) #27 CEP131 (ENSDLEG00000003577) #28 PVALEF (ENSDLEG00000003600) #29 AATK (ENSDLEG00000003613) #30 BAIAP2 (ENSDLEG00000003640) #31 CHMP6 (ENSDLEG00000003668) #32 RPTOR (ENSDLEG00000003717) #33 NPTX1 (ENSDLEG00000004039) #35 ENDOV (ENSDLEG00000004046) RNF213 (ENSDLEG00000004275) SLC26A11 (ENSDLEG00000005532) SGSH (ENSDLEG00000005709) Narwhal MODERN SPECIES 316 PPP1R27 (ENSMMNG00015019423) #10 ENSMMNG00015019450 GCGR (ENSMMNG00015019507) ENSMMNG00015019554 SLC25A10 (ENSMMNG00015019574) #11 MRPL12 (ENSMMNG00015019602) #12 HGS (ENSMMNG00015019629) #13 ENSMMNG00015019647 #14 CCDC137 (ENSMMNG00015019664) #15 ENSMMNG00015019695 #16 PDE6G (ENSMMNG00015019707) #17 ENSMMNG00015019722 #18 NPLOC4 (ENSMMNG00015019752) #19 FAAP100 (ENSMMNG00015019858) #20 FSCN2 (ENSMMNG00015019897) #21 ACTG1 (ENSMMNG00015019925) #22 BAHCC1 (ENSMMNG00015019961) #23 SLC38A10 (ENSMMNG00015020036) #25 NDUFAF8 (ENSMMNG00015020093) #26 TEPSIN (ENSMMNG00015020123) #27 CEP131 (ENSMMNG00015020216) #28 PVALEF (ENSMMNG00015020281) #29 AATK (ENSMMNG00015020344) #30 BAIAP2 (ENSMMNG00015020576) #31 CHMP6 (ENSMMNG00015020662) #32 RPTOR (ENSMMNG00015020731) #33 NPTX1 (ENSMMNG00015020920) #35 ENDOV (ENSMMNG00015020948) RNF213 (ENSMMNG00015021344) SLC26A11 (ENSMMNG00015021882) SGSH (ENSMMNG00015021892) Pecora ANCESTRAL SPECIES 1 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927.e #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00910000147524 #36 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C Yarkand deer MODERN SPECIES 28 MCRIP1 (ENSCHYG00000024250) GCGR (ENSCHYG00000024352) SLC25A10 (ENSCHYG00000024415) #11 MRPL12 (ENSCHYG00000024470) #12 HGS (ENSCHYG00000024504) #13 ARL16 (ENSCHYG00000024567) #14 CCDC137 (ENSCHYG00000024590) #15 OXLD1 (ENSCHYG00000005913) #16 ENSCHYG00000005931 #17 TSPAN10 (ENSCHYG00000006021) #18 ENSCHYG00000006202 NPLOC4 (ENSCHYG00000006240) #19 ENSCHYG00000006321 FAAP100 (ENSCHYG00000006343) #20 FSCN2 (ENSCHYG00000006437) #21 ACTG1 (ENSCHYG00000006481) #22 BAHCC1 (ENSCHYG00000006566) #23 SLC38A10 (ENSCHYG00000006821) #25 NDUFAF8 (ENSCHYG00000006983) #26 TEPSIN (ENSCHYG00000007009) #27 CEP131 (ENSCHYG00000007067) #28 PVALEF (ENSCHYG00000007265) #29 AATK (ENSCHYG00000007314) #30 BAIAP2 (ENSCHYG00000007498) #31 CHMP6 (ENSCHYG00000007924) #32 RPTOR (ENSCHYG00000008045) #33 NPTX1 (ENSCHYG00000009763) #35 ENSCHYG00000009829 #37 ENSCHYG00000009931 SLC26A11 (ENSCHYG00000010064) SGSH (ENSCHYG00000010175) Percora_a ANCESTRAL SPECIES 2 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927.e #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00910000147524 #36 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT00940000166332 Siberian musk deer MODERN SPECIES 1210 P4HB (ENSMMSG00000023476) #9 PPP1R27 (ENSMMSG00000023485) #10 MCRIP1 (ENSMMSG00000023490) GCGR (ENSMMSG00000023503) SLC25A10 (ENSMMSG00000023511) #11 MRPL12 (ENSMMSG00000023519) #12 HGS (ENSMMSG00000023527) #13 ARL16 (ENSMMSG00000023540) #14 CCDC137 (ENSMMSG00000023544) #15 OXLD1 (ENSMMSG00000023555) #16 PDE6G (ENSMMSG00000023559) #17 TSPAN10 (ENSMMSG00000023568) #18 NPLOC4 (ENSMMSG00000023588) #19 FAAP100 (ENSMMSG00000023613) #20 FSCN2 (ENSMMSG00000023620) #21 ACTG1 (ENSMMSG00000023630) #22 BAHCC1 (ENSMMSG00000023656) #23 SLC38A10 (ENSMMSG00000023720) #25 NDUFAF8 (ENSMMSG00000023735) #26 TEPSIN (ENSMMSG00000023741) #27 CEP131 (ENSMMSG00000023759) #28 AATK (ENSMMSG00000019600) #30 BAIAP2 (ENSMMSG00000019653) #31 CHMP6 (ENSMMSG00000019799) #32 RPTOR (ENSMMSG00000019851) #33 NPTX1 (ENSMMSG00000019962) #35 ENSMMSG00000019998 RNF213 (ENSMMSG00000020416) SLC26A11 (ENSMMSG00000022822) SGSH (ENSMMSG00000022845) CARD14 (ENSMMSG00000022859) Bovidae ANCESTRAL SPECIES 2 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927.e #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00910000147524 #36 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT00940000166332 Bovinae ANCESTRAL SPECIES ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927.e #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C.w ENSGT01070000253775.b ENSGT00390000013080 American bison MODERN SPECIES 3285 P4HB (ENSBBBG00000015684) #9 PPP1R27 (ENSBBBG00000015692) #10 MCRIP1 (ENSBBBG00000015740) GCGR (ENSBBBG00000015780) SLC25A10 (ENSBBBG00000015815) #11 MRPL12 (ENSBBBG00000008550) #12 HGS (ENSBBBG00000015853) #13 ARL16 (ENSBBBG00000015867) #14 CCDC137 (ENSBBBG00000015881) #15 OXLD1 (ENSBBBG00000015885) #16 PDE6G (ENSBBBG00000000775) #17 TSPAN10 (ENSBBBG00000015968) #18 NPLOC4 (ENSBBBG00000016001) #19 FAAP100 (ENSBBBG00000016021) #20 FSCN2 (ENSBBBG00000016029) #21 ACTG1 (ENSBBBG00000016050) #22 BAHCC1 (ENSBBBG00000004029) #23 SLC38A10 (ENSBBBG00000004104) #25 NDUFAF8 (ENSBBBG00000006887) #26 TEPSIN (ENSBBBG00000016643) #27 CEP131 (ENSBBBG00000016985) #28 AATK (ENSBBBG00000017125) #30 BAIAP2 (ENSBBBG00000007909) #31 CHMP6 (ENSBBBG00000017320) #32 RPTOR (ENSBBBG00000004328) #33 NPTX1 (ENSBBBG00000017513) #35 ENSBBBG00000017515 #37 ENDOV (ENSBBBG00000017557) ENSBBBG00000017961 SLC26A11 (ENSBBBG00000018043) SGSH (ENSBBBG00000018053) Bos ANCESTRAL SPECIES 1 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850.c.a ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927.e #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C.w ENSGT00630000089884.C.x ENSGT00940000166332 Bos_a ANCESTRAL SPECIES ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850.c.a ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927.e #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C.w ENSGT00630000089884.C.x ENSGT00940000166332 Wild yak MODERN SPECIES 1772 P4HB (ENSBMUG00000026384) #9 PPP1R27 (ENSBMUG00000026385) #10 ENSBMUG00000026386 GCGR (ENSBMUG00000026387) SLC25A10 (ENSBMUG00000026389) #11 MRPL12 (ENSBMUG00000026391) #12 HGS (ENSBMUG00000026393) #13 ARL16 (ENSBMUG00000026396) #14 CCDC137 (ENSBMUG00000026398) #15 OXLD1 (ENSBMUG00000026400) #16 TSPAN10 (ENSBMUG00000026403) #18 PDE6G (ENSBMUG00000026404) #17 NPLOC4 (ENSBMUG00000026408) #19 FAAP100 (ENSBMUG00000026413) #20 FSCN2 (ENSBMUG00000026416) #21 ACTG1 (ENSBMUG00000026419) #22 BAHCC1 (ENSBMUG00000026431) #23 SLC38A10 (ENSBMUG00000026434) #25 NDUFAF8 (ENSBMUG00000026435) #26 TEPSIN (ENSBMUG00000026436) #27 CEP131 (ENSBMUG00000026454) #28 Domestic yak MODERN SPECIES 10 P4HB (ENSBGRG00000003814) #9 PPP1R27 (ENSBGRG00000025657) #10 ENSBGRG00000025624 GCGR (ENSBGRG00000025609) SLC25A10 (ENSBGRG00000025566) #11 MRPL12 (ENSBGRG00000025552) #12 HGS (ENSBGRG00000025508) #13 ARL16 (ENSBGRG00000025489) #14 CCDC137 (ENSBGRG00000025468) #15 OXLD1 (ENSBGRG00000025463) #16 ENSBGRG00000025444 #17 TSPAN10 (ENSBGRG00000025439) #18 NPLOC4 (ENSBGRG00000025394) #19 FAAP100 (ENSBGRG00000025378) #20 FSCN2 (ENSBGRG00000025362) #21 ACTG1 (ENSBGRG00000025349) #22 BAHCC1 (ENSBGRG00000025318) #23 SLC38A10 (ENSBGRG00000025230) #25 NDUFAF8 (ENSBGRG00000025201) #26 TEPSIN (ENSBGRG00000025170) #27 CEP131 (ENSBGRG00000025011) #28 AATK (ENSBGRG00000024937) #30 BAIAP2 (ENSBGRG00000024535) #31 ENSBGRG00000024440 #32 RPTOR (ENSBGRG00000023886) #33 NPTX1 (ENSBGRG00000023812) #35 ENSBGRG00000023791 #37 ENDOV (ENSBGRG00000023631) SLC26A11 (ENSBGRG00000022237) SGSH (ENSBGRG00000022066) CARD14 (ENSBGRG00000021993) Bos_b ANCESTRAL SPECIES 21 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850.c.a ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927.e #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C.w ENSGT00630000089884.C.x ENSGT00940000166332 Hybrid Bos Indicus MODERN SPECIES 10 P4HB (ENSBIXG00005002214) #9 PPP1R27 (ENSBIXG00005006926) #10 MCRIP1 (ENSBIXG00005015031) GCGR (ENSBIXG00005014961) SLC25A10 (ENSBIXG00005014928) #11 MRPL12 (ENSBIXG00005005498) #12 HGS (ENSBIXG00005007754) #13 ARL16 (ENSBIXG00005007457) #14 CCDC137 (ENSBIXG00005014820) #15 OXLD1 (ENSBIXG00005014805) #16 PDE6G (ENSBIXG00005014790) #17 TSPAN10 (ENSBIXG00005014757) #18 FAAP100 (ENSBIXG00005014736) #20 ENSBIXG00005014667 #19 FSCN2 (ENSBIXG00005014641) #21 ACTG1 (ENSBIXG00005014617) #22 BAHCC1 (ENSBIXG00005014547) #23 SLC38A10 (ENSBIXG00005001981) #25 NDUFAF8 (ENSBIXG00005014478) #26 TEPSIN (ENSBIXG00005007273) #27 CEP131 (ENSBIXG00005001925) #28 AATK (ENSBIXG00005014360) #30 BAIAP2 (ENSBIXG00005014307) #31 CHMP6 (ENSBIXG00005014234) #32 RPTOR (ENSBIXG00005014201) #33 ENSBIXG00005014160 NPTX1 (ENSBIXG00005014152) #35 ENDOV (ENSBIXG00005014113) ENSBIXG00005013789 ENSBIXG00005011186 SLC26A11 (ENSBIXG00005009552) Cow MODERN SPECIES 10 P4HB (ENSBTAG00000006045) #9 PPP1R27 (ENSBTAG00000024929) #10 MCRIP1 (ENSBTAG00000019812) GCGR (ENSBTAG00000003786) SLC25A10 (ENSBTAG00000055145) #11 MRPL12 (ENSBTAG00000000417) #12 HGS (ENSBTAG00000000411) #13 ARL16 (ENSBTAG00000053129) #14 CCDC137 (ENSBTAG00000000356) #15 OXLD1 (ENSBTAG00000000355) #16 PDE6G (ENSBTAG00000000354) #17 TSPAN10 (ENSBTAG00000040573) #18 NPLOC4 (ENSBTAG00000019105) #19 FAAP100 (ENSBTAG00000019104) #20 FSCN2 (ENSBTAG00000024932) #21 ACTG1 (ENSBTAG00000006189) #22 BAHCC1 (ENSBTAG00000016776) #23 SLC38A10 (ENSBTAG00000018271) #25 NDUFAF8 (ENSBTAG00000053886) #26 TEPSIN (ENSBTAG00000019972) #27 CEP131 (ENSBTAG00000000875) #28 AATK (ENSBTAG00000019049) #30 BAIAP2 (ENSBTAG00000019044) #31 CHMP6 (ENSBTAG00000038745) #32 RPTOR (ENSBTAG00000002883) #33 ENDOV (ENSBTAG00000015339) NPTX1 (ENSBTAG00000008940) #35 ENSBTAG00000050737 #37 ENSBTAG00000022489 ENSBTAG00000053071 ENSBTAG00000017233 Caprinae ANCESTRAL SPECIES 1 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927.e #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00910000147524 #36 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Rambouillet Sheep MODERN SPECIES 2 P4HB (ENSOARG00020025236) #9 PPP1R27 (ENSOARG00020025219) #10 MCRIP1 (ENSOARG00020025199) GCGR (ENSOARG00020025179) SLC25A10 (ENSOARG00020025141) #11 MRPL12 (ENSOARG00020025126) #12 HGS (ENSOARG00020025119) #13 ARL16 (ENSOARG00020025114) #14 CCDC137 (ENSOARG00020025104) #15 OXLD1 (ENSOARG00020025092) #16 PDE6G (ENSOARG00020025080) #17 TSPAN10 (ENSOARG00020025073) #18 NPLOC4 (ENSOARG00020025045) #19 FAAP100 (ENSOARG00020025026) #20 FSCN2 (ENSOARG00020025011) #21 ACTG1 (ENSOARG00020025000) #22 BAHCC1 (ENSOARG00020024787) #23 SLC38A10 (ENSOARG00020023671) #25 NDUFAF8 (ENSOARG00020023592) #26 TEPSIN (ENSOARG00020023542) #27 CEP131 (ENSOARG00020023259) #28 AATK (ENSOARG00020022940) #30 BAIAP2 (ENSOARG00020022811) #31 CHMP6 (ENSOARG00020022758) #32 RPTOR (ENSOARG00020022253) #33 NPTX1 (ENSOARG00020022187) #35 ENSOARG00020022167 #36 ENSOARG00020022147 #37 ENDOV (ENSOARG00020022076) RNF213 (ENSOARG00020015618) SLC26A11 (ENSOARG00020015363) Goat DUPLICATION Goat MODERN SPECIES TFF2 (ENSCHIG00000026146) TFF3 (ENSCHIG00000016300) ABCG1 (ENSCHIG00000007254) ENSCHIG00000016072 ZBTB21 (ENSCHIG00000022184) C2CD2 (ENSCHIG00000012559) PRDM15 (ENSCHIG00000016222) RIPK4 (ENSCHIG00000012268) ENSCHIG00000008117 ENSCHIG00000011563 ENSCHIG00000007612 TMPRSS2 (ENSCHIG00000024477) MX1 (ENSCHIG00000001865) MX2 (ENSCHIG00000014150) FAM3B (ENSCHIG00000017490) ENSCHIG00000016035 #22 BACE2 (ENSCHIG00000019839) ENSCHIG00000015454 ENSCHIG00000025338 DSCAM (ENSCHIG00000010917) PCP4 (ENSCHIG00000026748) ENSCHIG00000010437 B3GALT5 (ENSCHIG00000003423) SH3BGR (ENSCHIG00000018188) LCA5L (ENSCHIG00000013759) GET1 (ENSCHIG00000008859) ENSCHIG00000000879 ENSCHIG00000008037 BRWD1 (ENSCHIG00000013528) ENSCHIG00000022501 PSMG1 (ENSCHIG00000005726) Goat MODERN SPECIES 10 P4HB (ENSCHIG00000026541) #9 PPP1R27 (ENSCHIG00000013059) #10 MCRIP1 (ENSCHIG00000026672) GCGR (ENSCHIG00000011335) SLC25A10 (ENSCHIG00000014615) #11 MRPL12 (ENSCHIG00000027210) #12 HGS (ENSCHIG00000025208) #13 ARL16 (ENSCHIG00000017946) #14 CCDC137 (ENSCHIG00000011693) #15 OXLD1 (ENSCHIG00000016238) #16 TSPAN10 (ENSCHIG00000026861) #18 PDE6G (ENSCHIG00000016232) #17 NPLOC4 (ENSCHIG00000008794) #19 FAAP100 (ENSCHIG00000019046) #20 FSCN2 (ENSCHIG00000010058) #21 ACTG1 (ENSCHIG00000026676) #22 BAHCC1 (ENSCHIG00000002854) #23 SLC38A10 (ENSCHIG00000014662) #25 NDUFAF8 (ENSCHIG00000022280) #26 TEPSIN (ENSCHIG00000016910) #27 CEP131 (ENSCHIG00000012216) #28 AATK (ENSCHIG00000025506) #30 BAIAP2 (ENSCHIG00000017258) #31 CHMP6 (ENSCHIG00000002880) #32 RPTOR (ENSCHIG00000020861) #33 NPTX1 (ENSCHIG00000013832) #35 ENSCHIG00000025171 #36 ENSCHIG00000014861 #37 ENDOV (ENSCHIG00000021238) RNF213 (ENSCHIG00000017136) SLC26A11 (ENSCHIG00000014026) Laurasiatheria_b ANCESTRAL SPECIES 4 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Laurasiatheria_c ANCESTRAL SPECIES 3 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Equus ANCESTRAL SPECIES ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Donkey MODERN SPECIES 4 P4HB (ENSEASG00005005814) #9 PPP1R27 (ENSEASG00005005812) #10 ENSEASG00005029020 GCGR (ENSEASG00005005791) SLC25A10 (ENSEASG00005005784) #11 MRPL12 (ENSEASG00005005780) #12 HGS (ENSEASG00005005773) #13 ARL16 (ENSEASG00005033082) #14 CCDC137 (ENSEASG00005033605) #15 OXLD1 (ENSEASG00005032509) #16 PDE6G (ENSEASG00005035748) #17 ENSEASG00005005762 #18 NPLOC4 (ENSEASG00005005741) #19 FAAP100 (ENSEASG00005005738) #20 FSCN2 (ENSEASG00005005735) #21 ACTG1 (ENSEASG00005005734) #22 BAHCC1 (ENSEASG00005005710) #23 SLC38A10 (ENSEASG00005005687) #25 NDUFAF8 (ENSEASG00005033068) #26 TEPSIN (ENSEASG00005005682) #27 CEP131 (ENSEASG00005005660) #28 PVALEF (ENSEASG00005038627) #29 ENSEASG00005037082 AATK (ENSEASG00005005630) #30 BAIAP2 (ENSEASG00005005614) #31 CHMP6 (ENSEASG00005036678) #32 RPTOR (ENSEASG00005005534) #33 NPTX1 (ENSEASG00005005487) #35 ENSEASG00005005485 #37 ENDOV (ENSEASG00005005482) RNF213 (ENSEASG00005005259) Horse MODERN SPECIES 2 PPP1R27 (ENSECAG00000008044) #10 MCRIP1 (ENSECAG00000008867) GCGR (ENSECAG00000009806) SLC25A10 (ENSECAG00000023250) #11 MRPL12 (ENSECAG00000044806) #12 HGS (ENSECAG00000010874) #13 ARL16 (ENSECAG00000026875) #14 CCDC137 (ENSECAG00000026974) #15 OXLD1 (ENSECAG00000011732) #16 PDE6G (ENSECAG00000011977) #17 TSPAN10 (ENSECAG00000011990) #18 NPLOC4 (ENSECAG00000012622) #19 ENSECAG00000060210 FAAP100 (ENSECAG00000002876) #20 FSCN2 (ENSECAG00000012565) #21 ACTG1 (ENSECAG00000018600) #22 BAHCC1 (ENSECAG00000021325) #23 SLC38A10 (ENSECAG00000013118) #25 TEPSIN (ENSECAG00000024720) #27 CEP131 (ENSECAG00000007579) #28 PVALEF (ENSECAG00000043309) #29 AATK (ENSECAG00000021405) #30 BAIAP2 (ENSECAG00000022150) #31 CHMP6 (ENSECAG00000012902) #32 RPTOR (ENSECAG00000017757) #33 NPTX1 (ENSECAG00000011663) #35 ENSECAG00000035602 #37 ENDOV (ENSECAG00000012208) RNF213 (ENSECAG00000016217) SLC26A11 (ENSECAG00000010099) SGSH (ENSECAG00000004844) Chiroptera ANCESTRAL SPECIES 2 ENSGT00390000006233.c.b #8 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 Megabat MODERN SPECIES 2264 FSCN2 (ENSPVAG00000013158) #21 ACTG1 (ENSPVAG00000013155) #22 ENSPVAG00000013152 #23 Microchiroptera ANCESTRAL SPECIES ENSGT00390000006233.c.b #8 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 Greater horseshoe bat DUPLICATION Greater horseshoe bat MODERN SPECIES EFNB1 (ENSRFEG00010000075) PJA1 (ENSRFEG00010000073) NALF2 (ENSRFEG00010000072) EDA (ENSRFEG00010000071) AWAT2 (ENSRFEG00010000070) OTUD6A (ENSRFEG00010000069) ENSRFEG00010000068 DGAT2L6 (ENSRFEG00010000067) AWAT1 (ENSRFEG00010000066) P2RY4 (ENSRFEG00010000065) PDZD11 (ENSRFEG00010000064) KIF4A (ENSRFEG00010000063) ENSRFEG00010000062 GDPD2 (ENSRFEG00010000061) DLG3 (ENSRFEG00010000060) ENSRFEG00010000057 #22 SLC7A3 (ENSRFEG00010000056) ENSRFEG00010000055 SNX12 (ENSRFEG00010000054) FOXO4 (ENSRFEG00010000053) CXorf65 (ENSRFEG00010000052) IL2RG (ENSRFEG00010000051) MED12 (ENSRFEG00010000050) NLGN3 (ENSRFEG00010000049) GJB1 (ENSRFEG00010000048) ZMYM3 (ENSRFEG00010000047) ENSRFEG00010000046 ITGB1BP2 (ENSRFEG00010000045) ENSRFEG00010000043 ENSRFEG00010000042 ENSRFEG00010000041 Greater horseshoe bat MODERN SPECIES 13 ARHGDIA (ENSRFEG00010005502) #8 P4HB (ENSRFEG00010005441) #9 ENSRFEG00010021998 #10 MCRIP1 (ENSRFEG00010021995) SLC25A10 (ENSRFEG00010021978) #11 MRPL12 (ENSRFEG00010021977) #12 HGS (ENSRFEG00010021971) #13 ARL16 (ENSRFEG00010021964) #14 CCDC137 (ENSRFEG00010021956) #15 ENSRFEG00010021949 #16 PDE6G (ENSRFEG00010021945) #17 TSPAN10 (ENSRFEG00010021940) #18 NPLOC4 (ENSRFEG00010021924) #19 FAAP100 (ENSRFEG00010021911) #20 FSCN2 (ENSRFEG00010021901) #21 ACTG1 (ENSRFEG00010021899) #22 BAHCC1 (ENSRFEG00010021891) #23 SLC38A10 (ENSRFEG00010021867) #25 NDUFAF8 (ENSRFEG00010021860) #26 TEPSIN (ENSRFEG00010021842) #27 CEP131 (ENSRFEG00010021824) #28 PVALEF (ENSRFEG00010021815) #29 AATK (ENSRFEG00010021802) #30 BAIAP2 (ENSRFEG00010021767) #31 CHMP6 (ENSRFEG00010021749) #32 RPTOR (ENSRFEG00010021654) #33 NPTX1 (ENSRFEG00010021602) #35 ENDOV (ENSRFEG00010021573) RNF213 (ENSRFEG00010020737) SLC26A11 (ENSRFEG00010020351) SGSH (ENSRFEG00010020286) Carnivora ANCESTRAL SPECIES 9 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Felidae ANCESTRAL SPECIES 8 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927.c #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Cat MODERN SPECIES 245 P4HB (ENSFCAG00000029560) #9 PPP1R27 (ENSFCAG00000026641) #10 MCRIP1 (ENSFCAG00000029556) GCGR (ENSFCAG00000016364) SLC25A10 (ENSFCAG00000012935) #11 MRPL12 (ENSFCAG00000047843) #12 HGS (ENSFCAG00000012926) #13 ARL16 (ENSFCAG00000018816) #14 CCDC137 (ENSFCAG00000012925) #15 OXLD1 (ENSFCAG00000043955) #16 PDE6G (ENSFCAG00000012923) #17 TSPAN10 (ENSFCAG00000012921) #18 NPLOC4 (ENSFCAG00000012919) #19 FAAP100 (ENSFCAG00000012918) #20 FSCN2 (ENSFCAG00000012915) #21 ACTG1 (ENSFCAG00000032144) #22 BAHCC1 (ENSFCAG00000006020) #23 SLC38A10 (ENSFCAG00000007576) #25 ENSFCAG00000043649 #26 TEPSIN (ENSFCAG00000007574) #27 CEP131 (ENSFCAG00000014679) #28 PVALEF (ENSFCAG00000036823) #29 AATK (ENSFCAG00000025513) #30 BAIAP2 (ENSFCAG00000011461) #31 CHMP6 (ENSFCAG00000033191) #32 RPTOR (ENSFCAG00000011453) #33 NPTX1 (ENSFCAG00000046243) #35 ENSFCAG00000053657 #37 ENDOV (ENSFCAG00000031769) RNF213 (ENSFCAG00000000945) SLC26A11 (ENSFCAG00000000943) Panthera ANCESTRAL SPECIES 22 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927.c #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Panthera_a ANCESTRAL SPECIES 25 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927.c #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b lion MODERN SPECIES 14 ARHGDIA (ENSPLOG00000014933) #8 P4HB (ENSPLOG00000014997) #9 PPP1R27 (ENSPLOG00000015125) #10 MCRIP1 (ENSPLOG00000015210) SLC25A10 (ENSPLOG00000015507) #11 MRPL12 (ENSPLOG00000015549) #12 HGS (ENSPLOG00000015616) #13 ARL16 (ENSPLOG00000015796) #14 CCDC137 (ENSPLOG00000015853) #15 OXLD1 (ENSPLOG00000015912) #16 PDE6G (ENSPLOG00000015931) #17 TSPAN10 (ENSPLOG00000015971) #18 NPLOC4 (ENSPLOG00000016061) #19 FAAP100 (ENSPLOG00000016258) #20 FSCN2 (ENSPLOG00000016301) #21 ACTG1 (ENSPLOG00000016355) #22 BAHCC1 (ENSPLOG00000016457) #23 SLC38A10 (ENSPLOG00000017092) #25 NDUFAF8 (ENSPLOG00000017286) #26 TEPSIN (ENSPLOG00000017408) #27 CEP131 (ENSPLOG00000018196) #28 PVALEF (ENSPLOG00000018901) #29 AATK (ENSPLOG00000018980) #30 BAIAP2 (ENSPLOG00000019355) #31 CHMP6 (ENSPLOG00000019531) #32 RPTOR (ENSPLOG00000019635) #33 NPTX1 (ENSPLOG00000020091) #35 ENSPLOG00000020124 #37 ENDOV (ENSPLOG00000020145) RNF213 (ENSPLOG00000020885) SLC26A11 (ENSPLOG00000022329) leopard MODERN SPECIES 48 P4HB (ENSPPRG00000009805) #9 PPP1R27 (ENSPPRG00000007209) #10 MCRIP1 (ENSPPRG00000007085) GCGR (ENSPPRG00000005699) SLC25A10 (ENSPPRG00000004508) #11 MRPL12 (ENSPPRG00000002570) #12 HGS (ENSPPRG00000001891) #13 ARL16 (ENSPPRG00000000581) #14 CCDC137 (ENSPPRG00000000164) #15 OXLD1 (ENSPPRG00000022989) #16 PDE6G (ENSPPRG00000023200) #17 TSPAN10 (ENSPPRG00000023544) #18 NPLOC4 (ENSPPRG00000024069) #19 FAAP100 (ENSPPRG00000024560) #20 FSCN2 (ENSPPRG00000024836) #21 ACTG1 (ENSPPRG00000024869) #22 SLC38A10 (ENSPPRG00000013156) #25 NDUFAF8 (ENSPPRG00000010976) #26 TEPSIN (ENSPPRG00000010611) #27 CEP131 (ENSPPRG00000009756) #28 PVALEF (ENSPPRG00000003294) #29 BAIAP2 (ENSPPRG00000001572) #31 CHMP6 (ENSPPRG00000021959) #32 RPTOR (ENSPPRG00000020252) #33 ENSPPRG00000013533 NPTX1 (ENSPPRG00000013165) #35 ENSPPRG00000020605 #37 ENSPPRG00000020592 #37 ENDOV (ENSPPRG00000011602) SLC26A11 (ENSPPRG00000002900) SGSH (ENSPPRG00000022618) Tiger DUPLICATION Tiger MODERN SPECIES 357 ARL16 (ENSPTIG00000011455) #14 CCDC137 (ENSPTIG00000011450) #15 OXLD1 (ENSPTIG00000011444) #16 PDE6G (ENSPTIG00000011438) #17 TSPAN10 (ENSPTIG00000011412) #18 NPLOC4 (ENSPTIG00000011395) #19 ENSPTIG00000011357 #20 ACTG1 (ENSPTIG00000011343) #22 ENSPTIG00000011271 #25 PVALEF (ENSPTIG00000011257) #29 BAIAP2 (ENSPTIG00000011089) #31 ENSPTIG00000011058 #33 ENSPTIG00000009237 #37 ENSPTIG00000011041 ENSPTIG00000011022 SLC26A11 (ENSPTIG00000009900) SGSH (ENSPTIG00000009830) CARD14 (ENSPTIG00000009743) EIF4A3 (ENSPTIG00000009646) GAA (ENSPTIG00000009596) CCDC40 (ENSPTIG00000009561) TBC1D16 (ENSPTIG00000009432) CBX8 (ENSPTIG00000009412) Tiger MODERN SPECIES 155 EIF2AK1 (ENSPTIG00000019095) ANKRD61 (ENSPTIG00000021190) ENSPTIG00000021548 FAM220A (ENSPTIG00000007251) RAC1 (ENSPTIG00000002902) DAGLB (ENSPTIG00000007110) KDELR2 (ENSPTIG00000009649) GRID2IP (ENSPTIG00000010978) ZDHHC4 (ENSPTIG00000017464) INTS15 (ENSPTIG00000017840) ZNF12 (ENSPTIG00000019096) ENSPTIG00000020644 RBAK (ENSPTIG00000020755) RNF216 (ENSPTIG00000021179) ENSPTIG00000021755 ##21 ENSPTIG00000021797 #22 ENSPTIG00000021870 ENSPTIG00000021940 WIPI2 (ENSPTIG00000021994) ENSPTIG00000000233 MMD2 (ENSPTIG00000008440) RADIL (ENSPTIG00000011810) ENSPTIG00000013045 SDK1 (ENSPTIG00000016082) CARD11 (ENSPTIG00000011071) Caniformia ANCESTRAL SPECIES 6 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Canidae ANCESTRAL SPECIES 28 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 Red fox DUPLICATION Red fox MODERN SPECIES 74 TMEM215 (ENSVVUG00000021135) ENSVVUG00000021133 APTX (ENSVVUG00000021130) DNAJA1 (ENSVVUG00000021125) SMU1 (ENSVVUG00000021123) B4GALT1 (ENSVVUG00000021120) ENSVVUG00000021116 BAG1 (ENSVVUG00000021112) CHMP5 (ENSVVUG00000021108) NFX1 (ENSVVUG00000021100) ENSVVUG00000021097 AQP3 (ENSVVUG00000021093) NOL6 (ENSVVUG00000021087) UBE2R2 (ENSVVUG00000021082) UBAP2 (ENSVVUG00000021072) ENSVVUG00000021028 #22 DCAF12 (ENSVVUG00000021024) ENSVVUG00000021022 KIF24 (ENSVVUG00000021017) NUDT2 (ENSVVUG00000021013) MYORG (ENSVVUG00000021012) C9orf24 (ENSVVUG00000021011) FAM219A (ENSVVUG00000020990) ENSVVUG00000020985 DNAI1 (ENSVVUG00000020975) CNTFR (ENSVVUG00000020970) RPP25L (ENSVVUG00000020969) DCTN3 (ENSVVUG00000020968) ARID3C (ENSVVUG00000020967) SIGMAR1 (ENSVVUG00000020965) CCL27 (ENSVVUG00000020964) Red fox MODERN SPECIES 31 P4HB (ENSVVUG00000020076) #9 PPP1R27 (ENSVVUG00000020072) #10 MCRIP1 (ENSVVUG00000020069) GCGR (ENSVVUG00000020015) SLC25A10 (ENSVVUG00000020003) #11 MRPL12 (ENSVVUG00000020000) #12 HGS (ENSVVUG00000019977) #13 ARL16 (ENSVVUG00000019959) #14 CCDC137 (ENSVVUG00000019951) #15 OXLD1 (ENSVVUG00000019946) #16 PDE6G (ENSVVUG00000019936) #17 TSPAN10 (ENSVVUG00000019926) #18 NPLOC4 (ENSVVUG00000019455) #19 FAAP100 (ENSVVUG00000019385) #20 FSCN2 (ENSVVUG00000019375) #21 ENSVVUG00000019045 #22 BAHCC1 (ENSVVUG00000018955) #23 SLC38A10 (ENSVVUG00000018930) #25 NDUFAF8 (ENSVVUG00000018922) #26 ENSVVUG00000018920 #27 CEP131 (ENSVVUG00000018606) #28 PVALEF (ENSVVUG00000018578) #29 AATK (ENSVVUG00000018567) #30 BAIAP2 (ENSVVUG00000018559) #31 CHMP6 (ENSVVUG00000018552) #32 RPTOR (ENSVVUG00000018516) #33 NPTX1 (ENSVVUG00000018500) #35 ENDOV (ENSVVUG00000018497) RNF213 (ENSVVUG00000018142) SLC26A11 (ENSVVUG00000018062) SGSH (ENSVVUG00000018037) Red fox MODERN SPECIES 85 RBAK (ENSVVUG00000006406) ENSVVUG00000006401 RNF216 (ENSVVUG00000006387) FSCN1 (ENSVVUG00000006354) ##21 ENSVVUG00000006351 ##22 ENSVVUG00000006348 #22 FBXL18 (ENSVVUG00000006340) TNRC18 (ENSVVUG00000006202) SLC29A4 (ENSVVUG00000006184) WIPI2 (ENSVVUG00000006176) ENSVVUG00000006170 RADIL (ENSVVUG00000006124) AP5Z1 (ENSVVUG00000006080) FOXK1 (ENSVVUG00000006072) SDK1 (ENSVVUG00000005985) CARD11 (ENSVVUG00000005644) GNA12 (ENSVVUG00000005611) AMZ1 (ENSVVUG00000005606) BRAT1 (ENSVVUG00000005583) IQCE (ENSVVUG00000005475) TTYH3 (ENSVVUG00000005448) Canis_lupus ANCESTRAL SPECIES 34 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 Dog MODERN SPECIES 37 PPP1R27 (ENSCAFG00845009360) #10 ENSCAFG00845009427 ENSCAFG00845009591 SLC25A10 (ENSCAFG00845009761) #11 MRPL12 (ENSCAFG00845009823) #12 HGS (ENSCAFG00845009894) #13 CCDC137 (ENSCAFG00845010019) #15 ARL16 (ENSCAFG00845010117) #14 OXLD1 (ENSCAFG00845010153) #16 PDE6G (ENSCAFG00845010186) #17 ENSCAFG00845010214 #18 NPLOC4 (ENSCAFG00845010263) #19 ENSCAFG00845010378 FAAP100 (ENSCAFG00845010424) #20 FSCN2 (ENSCAFG00845010506) #21 ACTG1 (ENSCAFG00845010637) #22 BAHCC1 (ENSCAFG00845010723) #23 SLC38A10 (ENSCAFG00845010883) #25 NDUFAF8 (ENSCAFG00845010978) #26 TEPSIN (ENSCAFG00845011009) #27 CEP131 (ENSCAFG00845011198) #28 PVALEF (ENSCAFG00845011627) #29 BAIAP2 (ENSCAFG00845011762) #31 AATK (ENSCAFG00845012065) #30 RPTOR (ENSCAFG00845012286) #33 NPTX1 (ENSCAFG00845012691) #35 ENDOV (ENSCAFG00845012751) RNF213 (ENSCAFG00845012863) SLC26A11 (ENSCAFG00845013151) SGSH (ENSCAFG00845013218) CARD14 (ENSCAFG00845013259) Dingo DUPLICATION Dingo MODERN SPECIES 138 LETM1 (ENSCAFG00020012352) FGFR3 (ENSCAFG00020012349) TACC3 (ENSCAFG00020012340) TMEM129 (ENSCAFG00020012337) SLBP (ENSCAFG00020012334) FAM53A (ENSCAFG00020012319) NKX1-1 (ENSCAFG00020012312) UVSSA (ENSCAFG00020012302) MAEA (ENSCAFG00020012285) ENSCAFG00020012281 FAM184B (ENSCAFG00020012270) MED28 (ENSCAFG00020012266) LAP3 (ENSCAFG00020012262) CLRN2 (ENSCAFG00020012251) QDPR (ENSCAFG00020012248) ENSCAFG00020012245 #22 ENSCAFG00020012229 LDB2 (ENSCAFG00020012223) TAPT1 (ENSCAFG00020012130) PROM1 (ENSCAFG00020011597) ENSCAFG00020011578 FGFBP1 (ENSCAFG00020011576) CD38 (ENSCAFG00020011563) BST1 (ENSCAFG00020011559) FAM200B (ENSCAFG00020011557) FBXL5 (ENSCAFG00020011555) ENSCAFG00020011553 CC2D2A (ENSCAFG00020011458) C1QTNF7 (ENSCAFG00020011417) CPEB2 (ENSCAFG00020011244) ENSCAFG00020011215 Dingo MODERN SPECIES 68 P4HB (ENSCAFG00020009784) #9 PPP1R27 (ENSCAFG00020009781) #10 ENSCAFG00020009774 ENSCAFG00020009754 SLC25A10 (ENSCAFG00020009743) #11 HGS (ENSCAFG00020009730) #13 ARL16 (ENSCAFG00020009724) #14 CCDC137 (ENSCAFG00020009718) #15 OXLD1 (ENSCAFG00020009713) #16 PDE6G (ENSCAFG00020009698) #17 TSPAN10 (ENSCAFG00020009674) #18 ENSCAFG00020009672 NPLOC4 (ENSCAFG00020009257) #19 FAAP100 (ENSCAFG00020009233) #20 FSCN2 (ENSCAFG00020009227) #21 ACTG1 (ENSCAFG00020009054) #22 BAHCC1 (ENSCAFG00020008941) #23 SLC38A10 (ENSCAFG00020008919) #25 NDUFAF8 (ENSCAFG00020008911) #26 TEPSIN (ENSCAFG00020008901) #27 CEP131 (ENSCAFG00020008734) #28 PVALEF (ENSCAFG00020008717) #29 AATK (ENSCAFG00020008710) #30 BAIAP2 (ENSCAFG00020008698) #31 CHMP6 (ENSCAFG00020008693) #32 RPTOR (ENSCAFG00020008688) #33 NPTX1 (ENSCAFG00020008681) #35 ENDOV (ENSCAFG00020008671) ENSCAFG00020008614 SLC26A11 (ENSCAFG00020008347) SGSH (ENSCAFG00020008312) Caniformia_b ANCESTRAL SPECIES 20 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B.b #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Mustelinae ANCESTRAL SPECIES 1 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B.b #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b American mink MODERN SPECIES 27 P4HB (ENSNVIG00000016345) #9 PPP1R27 (ENSNVIG00000016333) #10 MCRIP1 (ENSNVIG00000016259) GCGR (ENSNVIG00000016239) SLC25A10 (ENSNVIG00000016191) #11 MRPL12 (ENSNVIG00000016176) #12 HGS (ENSNVIG00000016154) #13 ENSNVIG00000016145 #14 CCDC137 (ENSNVIG00000016133) #15 OXLD1 (ENSNVIG00000016123) #16 PDE6G (ENSNVIG00000016105) #17 TSPAN10 (ENSNVIG00000016100) #18 NPLOC4 (ENSNVIG00000016063) #19 FAAP100 (ENSNVIG00000015999) #20 FSCN2 (ENSNVIG00000015970) #21 ACTG1 (ENSNVIG00000015943) #22 BAHCC1 (ENSNVIG00000015840) #23 SLC38A10 (ENSNVIG00000015824) #25 NDUFAF8 (ENSNVIG00000015813) #26 TEPSIN (ENSNVIG00000015787) #27 CEP131 (ENSNVIG00000015721) #28 PVALEF (ENSNVIG00000015706) #29 AATK (ENSNVIG00000015651) #30 BAIAP2 (ENSNVIG00000015599) #31 CHMP6 (ENSNVIG00000015572) #32 RPTOR (ENSNVIG00000015501) #33 NPTX1 (ENSNVIG00000015482) #35 ENSNVIG00000015478 #37 ENDOV (ENSNVIG00000015415) RNF213 (ENSNVIG00000014968) SLC26A11 (ENSNVIG00000014923) Ferret DUPLICATION Ferret DUPLICATION Ferret DUPLICATION Ferret MODERN SPECIES 64 ENSMPUG00000002367 #22 Ferret MODERN SPECIES 266 YTHDC1 (ENSMPUG00000001743) TMPRSS11E (ENSMPUG00000001737) TMPRSS11B (ENSMPUG00000001723) ENSMPUG00000001711 ENSMPUG00000001701 TMPRSS11F (ENSMPUG00000001691) ENSMPUG00000001688 TMPRSS11A (ENSMPUG00000001680) TMPRSS11D (ENSMPUG00000001673) ENSMPUG00000001649 UBA6 (ENSMPUG00000001636) STAP1 (ENSMPUG00000001601) CENPC (ENSMPUG00000001554) ENSMPUG00000001550 ENSMPUG00000001546 ENSMPUG00000001522 #22 EPHA5 (ENSMPUG00000001506) ENSMPUG00000001481 TECRL (ENSMPUG00000001474) ADGRL3 (ENSMPUG00000001363) Ferret MODERN SPECIES 678 ACTRT1 (ENSMPUG00000019772) ENSMPUG00000015870 #22 Ferret MODERN SPECIES 186 NOTUM (ENSMPUG00000011245) PCYT2 (ENSMPUG00000011252) ANAPC11 (ENSMPUG00000011339) GCGR (ENSMPUG00000011352) ENSMPUG00000011424 SLC25A10 (ENSMPUG00000011432) #11 ENSMPUG00000011438 #12 HGS (ENSMPUG00000011441) #13 CCDC137 (ENSMPUG00000011449) #15 OXLD1 (ENSMPUG00000011461) #16 PDE6G (ENSMPUG00000011466) #17 TSPAN10 (ENSMPUG00000011476) #18 NPLOC4 (ENSMPUG00000011483) #19 FAAP100 (ENSMPUG00000011549) #20 FSCN2 (ENSMPUG00000011553) #21 ACTG1 (ENSMPUG00000011610) #22 BAHCC1 (ENSMPUG00000011616) #23 SLC38A10 (ENSMPUG00000011685) #25 ENSMPUG00000011768 #27 CEP131 (ENSMPUG00000011775) #28 CHMP6 (ENSMPUG00000011889) #32 ENSMPUG00000019902 AATK (ENSMPUG00000011912) #30 BAIAP2 (ENSMPUG00000011938) #31 ENSMPUG00000019904 RPTOR (ENSMPUG00000011950) #33 ENSMPUG00000012076 #35 ENDOV (ENSMPUG00000012082) RNF213 (ENSMPUG00000012087) ENSMPUG00000012155 SLC26A11 (ENSMPUG00000012160) Ferret MODERN SPECIES 173 SLC38A11 (ENSMPUG00000000666) COBLL1 (ENSMPUG00000000663) GRB14 (ENSMPUG00000000662) FIGN (ENSMPUG00000000661) ENSMPUG00000000659 KCNH7 (ENSMPUG00000000645) GCA (ENSMPUG00000000641) IFIH1 (ENSMPUG00000000564) FAP (ENSMPUG00000000563) GCG (ENSMPUG00000000562) DPP4 (ENSMPUG00000000555) SLC4A10 (ENSMPUG00000000554) TBR1 (ENSMPUG00000000551) PSMD14 (ENSMPUG00000000548) TANK (ENSMPUG00000000545) ENSMPUG00000000542 #22 ENSMPUG00000019435 RBMS1 (ENSMPUG00000000539) ITGB6 (ENSMPUG00000000535) PLA2R1 (ENSMPUG00000000529) LY75 (ENSMPUG00000000504) CD302 (ENSMPUG00000000503) MARCHF7 (ENSMPUG00000000501) BAZ2B (ENSMPUG00000000490) WDSUB1 (ENSMPUG00000000486) TANC1 (ENSMPUG00000000482) DAPL1 (ENSMPUG00000000479) PKP4 (ENSMPUG00000000474) ENSMPUG00000019434 CCDC148 (ENSMPUG00000000469) ACVR1 (ENSMPUG00000000465) Ursidae ANCESTRAL SPECIES 19 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B.b #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Ursus ANCESTRAL SPECIES 32 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT00950000182890.A.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000164307 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B ENSGT00950000183060.a.a ENSGT00940000158717 American black bear MODERN SPECIES 328 SLC25A10 (ENSUAMG00000016770) #11 MRPL12 (ENSUAMG00000016771) #12 HGS (ENSUAMG00000016775) #13 ARL16 (ENSUAMG00000016783) #14 CCDC137 (ENSUAMG00000016785) #15 ENSUAMG00000016788 #16 PDE6G (ENSUAMG00000016791) #17 TSPAN10 (ENSUAMG00000016796) #18 NPLOC4 (ENSUAMG00000016805) #19 FAAP100 (ENSUAMG00000016873) #20 FSCN2 (ENSUAMG00000016877) #21 ACTG1 (ENSUAMG00000016879) #22 BAHCC1 (ENSUAMG00000016887) #23 Polar bear DUPLICATION Polar bear MODERN SPECIES 212 ENSUMAG00000008783 ENSUMAG00000008780 ENSUMAG00000008775 RAC1 (ENSUMAG00000008742) DAGLB (ENSUMAG00000008562) KDELR2 (ENSUMAG00000008508) ZDHHC4 (ENSUMAG00000008503) INTS15 (ENSUMAG00000008492) ZNF12 (ENSUMAG00000008484) ENSUMAG00000008479 ENSUMAG00000008474 RBAK (ENSUMAG00000008468) ENSUMAG00000008446 RNF216 (ENSUMAG00000008432) ENSUMAG00000008422 ##21 ENSUMAG00000007902 #22 WIPI2 (ENSUMAG00000007655) MMD2 (ENSUMAG00000007636) PAPOLB (ENSUMAG00000007631) ENSUMAG00000007627 ENSUMAG00000007613 FOXK1 (ENSUMAG00000007608) SDK1 (ENSUMAG00000007587) CARD11 (ENSUMAG00000007449) GNA12 (ENSUMAG00000007425) BRAT1 (ENSUMAG00000007379) IQCE (ENSUMAG00000007369) ENSUMAG00000007362 CHST12 (ENSUMAG00000007360) EIF3B (ENSUMAG00000007200) SNX8 (ENSUMAG00000007109) Polar bear MODERN SPECIES 185 ANAPC11 (ENSUMAG00000016388) ALYREF (ENSUMAG00000016384) #7 ARHGDIA (ENSUMAG00000016378) #8 P4HB (ENSUMAG00000016360) #9 PPP1R27 (ENSUMAG00000016353) #10 MCRIP1 (ENSUMAG00000016343) SLC25A10 (ENSUMAG00000016336) #11 MRPL12 (ENSUMAG00000016332) #12 HGS (ENSUMAG00000016322) #13 ARL16 (ENSUMAG00000016315) #14 CCDC137 (ENSUMAG00000016311) #15 ENSUMAG00000016309 #16 ENSUMAG00000016303 #18 NPLOC4 (ENSUMAG00000015627) #19 ENSUMAG00000015521 #20 ACTG1 (ENSUMAG00000015490) #22 SLC38A10 (ENSUMAG00000015428) #25 TEPSIN (ENSUMAG00000015404) #27 ENSUMAG00000015384 #28 PVALEF (ENSUMAG00000015376) #29 BAIAP2 (ENSUMAG00000015292) #31 CHMP6 (ENSUMAG00000015266) #32 RPTOR (ENSUMAG00000015257) #33 ENSUMAG00000015221 #37 ENDOV (ENSUMAG00000015201) ENSUMAG00000015029 ENSUMAG00000014992 SLC26A11 (ENSUMAG00000014986) SGSH (ENSUMAG00000014976) CARD14 (ENSUMAG00000014945) EIF4A3 (ENSUMAG00000014617) Giant Panda DUPLICATION Giant Panda DUPLICATION Giant Panda MODERN SPECIES 1871 ENSAMEG00000030194 #22 Giant Panda MODERN SPECIES 1954 ENSAMEG00000023594 #22 Giant Panda MODERN SPECIES 4 PPP1R27 (ENSAMEG00000017493) #10 MCRIP1 (ENSAMEG00000017494) GCGR (ENSAMEG00000017496) ENSAMEG00000023919 #11 MRPL12 (ENSAMEG00000017519) #12 HGS (ENSAMEG00000017535) #13 ARL16 (ENSAMEG00000017559) #14 ENSAMEG00000024545 #15 OXLD1 (ENSAMEG00000024263) #16 PDE6G (ENSAMEG00000017568) #17 TSPAN10 (ENSAMEG00000017574) #18 NPLOC4 (ENSAMEG00000017577) #19 ENSAMEG00000029610 FAAP100 (ENSAMEG00000016032) #20 FSCN2 (ENSAMEG00000024221) #21 ACTG1 (ENSAMEG00000016015) #22 BAHCC1 (ENSAMEG00000015499) #23 SLC38A10 (ENSAMEG00000015434) #25 NDUFAF8 (ENSAMEG00000026679) #26 TEPSIN (ENSAMEG00000015488) #27 CEP131 (ENSAMEG00000015453) #28 ENSAMEG00000025600 #29 AATK (ENSAMEG00000024195) #30 BAIAP2 (ENSAMEG00000015385) #31 CHMP6 (ENSAMEG00000015362) #32 RPTOR (ENSAMEG00000015318) #33 NPTX1 (ENSAMEG00000015312) #35 ENSAMEG00000026588 #37 ENDOV (ENSAMEG00000015304) RNF213 (ENSAMEG00000015281) SLC26A11 (ENSAMEG00000015248) Giant Panda DUPLICATION Giant Panda MODERN SPECIES 1524 ENSAMEG00000029331 #22 Giant Panda MODERN SPECIES 1305 ENSAMEG00000027216 #22 Giant Panda MODERN SPECIES 1961 ENSAMEG00000025753 #22 Atlantogenata ANCESTRAL SPECIES 21 ENSGT00940000154596.b ENSGT00950000184989 ENSGT00940000155825 ENSGT00390000014156 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000162728 ENSGT00940000154303.A ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Xenarthra ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b #22 Armadillo DUPLICATION Armadillo MODERN SPECIES 110 ENSDNOG00000030680 #22 Armadillo MODERN SPECIES 811 ITGA11 (ENSDNOG00000012822) ENSDNOG00000045706 CORO2B (ENSDNOG00000035953) ENSDNOG00000037960 ENSDNOG00000045325 NOX5 (ENSDNOG00000005365) GLCE (ENSDNOG00000042897) PAQR5 (ENSDNOG00000044935) KIF23 (ENSDNOG00000014185) ENSDNOG00000030825 TLE3 (ENSDNOG00000019320) UACA (ENSDNOG00000017227) LARP6 (ENSDNOG00000042993) LRRC49 (ENSDNOG00000010610) ENSDNOG00000031020 ENSDNOG00000011894 #22 THSD4 (ENSDNOG00000002153) NR2E3 (ENSDNOG00000045485) MYO9A (ENSDNOG00000004799) ENSDNOG00000039118 ENSDNOG00000044600 ENSDNOG00000036130 PCNX2 (ENSDNOG00000001976) ENSDNOG00000036436 MAP3K21 (ENSDNOG00000040670) KCNK1 (ENSDNOG00000010152) ENSDNOG00000031013 Armadillo MODERN SPECIES 1964 ENSDNOG00000047901 #22 ENSDNOG00000041042 Sloth DUPLICATION Sloth MODERN SPECIES 12315 ENSCHOG00000005050 #22 Sloth MODERN SPECIES 11545 ENSCHOG00000010621 #22 Afrotheria ANCESTRAL SPECIES 18 ENSGT00940000154596.b ENSGT00950000184989 ENSGT00940000155825 ENSGT00390000014156 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000162728 ENSGT00940000154303.A ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015109 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 Tenrec DUPLICATION Tenrec MODERN SPECIES 13452 ENSETEG00000020346 #22 Tenrec DUPLICATION Tenrec DUPLICATION Tenrec MODERN SPECIES 18770 ENSETEG00000015607 #22 Tenrec MODERN SPECIES 10121 ENSETEG00000002210 #22 Tenrec MODERN SPECIES 14955 ENSETEG00000019494 #22 ENSETEG00000019496 ENSETEG00000019498 Tenrec MODERN SPECIES 13445 ENSETEG00000018370 #22 Tenrec DUPLICATION Tenrec MODERN SPECIES 5899 WBP1L (ENSETEG00000008940) ENSETEG00000008942 #22 Tenrec MODERN SPECIES 8997 ENSETEG00000019805 PLXNC1 (ENSETEG00000019798) ENSETEG00000019795 #22 Afrotheria_a ANCESTRAL SPECIES 25 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 ENSGT00940000160777 Elephant DUPLICATION Elephant MODERN SPECIES 424 PPP1R27 (ENSLAFG00000020936) #10 MCRIP1 (ENSLAFG00000027566) GCGR (ENSLAFG00000029773) SLC25A10 (ENSLAFG00000028721) #11 MRPL12 (ENSLAFG00000004594) #12 HGS (ENSLAFG00000004589) #13 ENSLAFG00000020767 #14 OXLD1 (ENSLAFG00000030315) #16 CCDC137 (ENSLAFG00000015867) #15 ENSLAFG00000032568 #14 PDE6G (ENSLAFG00000030364) #17 ENSLAFG00000013545 #18 NPLOC4 (ENSLAFG00000015865) #19 FAAP100 (ENSLAFG00000032189) #20 ENSLAFG00000029816 #21 ENSLAFG00000009167 #22 ENSLAFG00000005800 #23 SLC38A10 (ENSLAFG00000021889) #25 NDUFAF8 (ENSLAFG00000032321) #26 TEPSIN (ENSLAFG00000001546) #27 CEP131 (ENSLAFG00000017080) #28 AATK (ENSLAFG00000004746) #30 BAIAP2 (ENSLAFG00000028916) #31 CHMP6 (ENSLAFG00000001720) #32 ENSLAFG00000030633 #33 ENSLAFG00000014929 #33 NPTX1 (ENSLAFG00000025581) #35 ENDOV (ENSLAFG00000026661) ENSLAFG00000011835 ENSLAFG00000028616 ENSLAFG00000011828 Elephant MODERN SPECIES 403 USP42 (ENSLAFG00000013305) ENSLAFG00000028040 CYTH3 (ENSLAFG00000010832) ENSLAFG00000003150 RAC1 (ENSLAFG00000012844) ENSLAFG00000004986 KDELR2 (ENSLAFG00000004992) GRID2IP (ENSLAFG00000020636) ZDHHC4 (ENSLAFG00000010790) INTS15 (ENSLAFG00000010793) ZNF316 (ENSLAFG00000016201) RBAK (ENSLAFG00000008833) ENSLAFG00000030133 RNF216 (ENSLAFG00000017088) FSCN1 (ENSLAFG00000031431) ##21 ENSLAFG00000001268 #22 FBXL18 (ENSLAFG00000001983) ENSLAFG00000004819 SLC29A4 (ENSLAFG00000014371) WIPI2 (ENSLAFG00000001086) MMD2 (ENSLAFG00000006633) RADIL (ENSLAFG00000006627) AP5Z1 (ENSLAFG00000026556) FOXK1 (ENSLAFG00000003036) ENSLAFG00000025597 ENSLAFG00000032479 ENSLAFG00000029731 ENSLAFG00000028866 ENSLAFG00000026973 SDK1 (ENSLAFG00000001272) CARD11 (ENSLAFG00000004647) Hyrax DUPLICATION Hyrax MODERN SPECIES 8686 ENSPCAG00000002190 #22 Hyrax MODERN SPECIES 5472 FAAP100 (ENSPCAG00000000917) #20 FSCN2 (ENSPCAG00000000879) #21 ACTG1 (ENSPCAG00000000854) #22 ENSPCAG00000000759 #23 Marsupialia ANCESTRAL SPECIES 13 ENSGT00940000157351.i #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Marsupialia_b ANCESTRAL SPECIES 16 ENSGT00940000157351.i #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Tasmanian devil DUPLICATION Tasmanian devil MODERN SPECIES 2 GPR82 (ENSSHAG00000006459) GPR34 (ENSSHAG00000025728) NYX (ENSSHAG00000024777) ENSSHAG00000007623 ENSSHAG00000008762 MED14 (ENSSHAG00000003470) ENSSHAG00000031563 ATP6AP2 (ENSSHAG00000005689) ENSSHAG00000028827 BCOR (ENSSHAG00000010865) ENSSHAG00000022083 MID1IP1 (ENSSHAG00000031170) TSPAN7 (ENSSHAG00000012655) OTC (ENSSHAG00000013760) ENSSHAG00000026580 ENSSHAG00000000010 #22 SRPX (ENSSHAG00000001996) SYTL5 (ENSSHAG00000005032) DYNLT3 (ENSSHAG00000024546) CYBB (ENSSHAG00000008469) XK (ENSSHAG00000028050) LANCL3 (ENSSHAG00000024649) PRRG1 (ENSSHAG00000021020) ENSSHAG00000012460 ENSSHAG00000021064 TMEM47 (ENSSHAG00000026216) DMD (ENSSHAG00000012110) TAB3 (ENSSHAG00000017602) ENSSHAG00000017813 ENSSHAG00000006470 TASL (ENSSHAG00000021619) Tasmanian devil MODERN SPECIES 3 ARHGDIA (ENSSHAG00000027581) #8 ENSSHAG00000031066 #9 PPP1R27 (ENSSHAG00000011363) #10 GCGR (ENSSHAG00000011733) SLC25A10 (ENSSHAG00000024906) #11 ENSSHAG00000012486 #11 HGS (ENSSHAG00000012570) #13 ARL16 (ENSSHAG00000012708) #14 CCDC137 (ENSSHAG00000029821) #15 ENSSHAG00000029815 #16 PDE6G (ENSSHAG00000013112) #17 ENSSHAG00000013145 #18 NPLOC4 (ENSSHAG00000013303) #19 FAAP100 (ENSSHAG00000013761) #20 FSCN2 (ENSSHAG00000013996) #21 ACTG1 (ENSSHAG00000027849) #22 BAHCC1 (ENSSHAG00000014704) #23 SLC38A10 (ENSSHAG00000015864) #25 ENSSHAG00000021413 #26 TEPSIN (ENSSHAG00000016077) #27 CEP131 (ENSSHAG00000016121) #28 PVALEF (ENSSHAG00000023652) #29 ENSSHAG00000002454 #30 BAIAP2 (ENSSHAG00000003845) #31 CHMP6 (ENSSHAG00000025676) #32 RPTOR (ENSSHAG00000008522) #33 NPTX1 (ENSSHAG00000006795) #35 ENDOV (ENSSHAG00000008416) RNF213 (ENSSHAG00000008617) SLC26A11 (ENSSHAG00000001366) SGSH (ENSSHAG00000003322) Diprotodontia ANCESTRAL SPECIES 9 ENSGT00940000157351.i #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Wallaby DUPLICATION Wallaby MODERN SPECIES 12016 ACTG1 (ENSMEUG00000016247) #22 Wallaby MODERN SPECIES 11888 ENSMEUG00000004831 #22 Diprotodontia_a ANCESTRAL SPECIES 11 ENSGT00940000157351.i #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Common wonbat MODERN SPECIES 571 MCRIP1 (ENSVURG00010008735) GCGR (ENSVURG00010008760) SLC25A10 (ENSVURG00010008775) #11 MRPL12 (ENSVURG00010008783) #12 ENSVURG00010008789 #11 HGS (ENSVURG00010008826) #13 ARL16 (ENSVURG00010008932) #14 CCDC137 (ENSVURG00010008950) #15 ENSVURG00010008979 #16 PDE6G (ENSVURG00010008961) #17 ENSVURG00010008987 ENSVURG00010008989 #18 NPLOC4 (ENSVURG00010008996) #19 FAAP100 (ENSVURG00010009045) #20 FSCN2 (ENSVURG00010009064) #21 ACTG1 (ENSVURG00010009071) #22 BAHCC1 (ENSVURG00010009097) #23 ENSVURG00010009265 SLC38A10 (ENSVURG00010009273) #25 ENSVURG00010009283 #26 TEPSIN (ENSVURG00010009288) #27 CEP131 (ENSVURG00010009309) #28 PVALEF (ENSVURG00010009376) #29 ENSVURG00010009390 #30 BAIAP2 (ENSVURG00010009441) #31 CHMP6 (ENSVURG00010009481) #32 RPTOR (ENSVURG00010009518) #33 NPTX1 (ENSVURG00010009574) #35 ENDOV (ENSVURG00010009587) SLC26A11 (ENSVURG00010009827) SGSH (ENSVURG00010009840) koala DUPLICATION koala MODERN SPECIES 22 CCDC127 (ENSPCIG00000016979) LRRC14B (ENSPCIG00000016978) ENSPCIG00000016974 INO80C (ENSPCIG00000016968) GALNT1 (ENSPCIG00000016959) C18orf21 (ENSPCIG00000016953) RPRD1A (ENSPCIG00000036063) SLC39A6 (ENSPCIG00000016952) ELP2 (ENSPCIG00000016951) MOCOS (ENSPCIG00000016950) FHOD3 (ENSPCIG00000022667) ENSPCIG00000022644 ENSPCIG00000022640 ENSPCIG00000022637 CELF4 (ENSPCIG00000034373) ENSPCIG00000033306 #22 ENSPCIG00000002505 ENSPCIG00000002523 ENSPCIG00000034284 PIK3C3 (ENSPCIG00000013229) RIT2 (ENSPCIG00000003034) SYT4 (ENSPCIG00000003048) SETBP1 (ENSPCIG00000011757) ENSPCIG00000011742 ENSPCIG00000019335 SLC14A2 (ENSPCIG00000019330) SLC14A1 (ENSPCIG00000019326) ENSPCIG00000019325 EPG5 (ENSPCIG00000019029) PSTPIP2 (ENSPCIG00000026564) ENSPCIG00000006831 koala MODERN SPECIES 87 PPP1R27 (ENSPCIG00000029575) #10 MCRIP1 (ENSPCIG00000029579) GCGR (ENSPCIG00000029581) SLC25A10 (ENSPCIG00000029584) #11 MRPL12 (ENSPCIG00000029585) #12 ENSPCIG00000036258 #11 HGS (ENSPCIG00000029590) #13 ARL16 (ENSPCIG00000029595) #14 CCDC137 (ENSPCIG00000029597) #15 ENSPCIG00000029601 PDE6G (ENSPCIG00000036613) #17 ENSPCIG00000029603 #18 NPLOC4 (ENSPCIG00000029604) #19 FAAP100 (ENSPCIG00000029607) #20 FSCN2 (ENSPCIG00000029609) #21 ACTG1 (ENSPCIG00000029614) #22 ENSPCIG00000037123 SLC38A10 (ENSPCIG00000029633) #25 ENSPCIG00000033416 #26 TEPSIN (ENSPCIG00000029639) #27 CEP131 (ENSPCIG00000029644) #28 ENSPCIG00000029651 ENSPCIG00000029654 #30 BAIAP2 (ENSPCIG00000029661) #31 CHMP6 (ENSPCIG00000029666) #32 RPTOR (ENSPCIG00000027281) #33 NPTX1 (ENSPCIG00000026953) #35 ENSPCIG00000026952 #37 ENDOV (ENSPCIG00000029110) RNF213 (ENSPCIG00000029111) SLC26A11 (ENSPCIG00000029112) Opossum DUPLICATION Opossum MODERN SPECIES 3 ENSMODG00000041931 ENSMODG00000023302 AZIN2 (ENSMODG00000017357) AK2 (ENSMODG00000017363) RNF19B (ENSMODG00000017373) TMEM54 (ENSMODG00000017380) HPCA (ENSMODG00000017388) FNDC5 (ENSMODG00000017392) ENSMODG00000017396 YARS1 (ENSMODG00000017404) KIAA1522 (ENSMODG00000017408) SYNC (ENSMODG00000017411) ENSMODG00000017415 ENSMODG00000017419 ENSMODG00000023306 ENSMODG00000017422 #22 ZBTB8A (ENSMODG00000017424) ZBTB8B (ENSMODG00000017428) TSSK3 (ENSMODG00000017432) FAM229A (ENSMODG00000017440) MARCKSL1 (ENSMODG00000040676) HDAC1 (ENSMODG00000017455) BSDC1 (ENSMODG00000017430) LCK (ENSMODG00000017464) FAM167B (ENSMODG00000017470) ENSMODG00000017474 EIF3I (ENSMODG00000017481) TMEM234 (ENSMODG00000017483) CCDC28B (ENSMODG00000017487) TXLNA (ENSMODG00000017491) KPNA6 (ENSMODG00000017528) Opossum MODERN SPECIES 1 ENSMODG00000002923 GCGR (ENSMODG00000002961) SLC25A10 (ENSMODG00000002920) #11 MRPL12 (ENSMODG00000002902) #12 ENSMODG00000025675 #11 HGS (ENSMODG00000002800) #13 ARL16 (ENSMODG00000042918) #14 CCDC137 (ENSMODG00000002713) #15 ENSMODG00000048791 #16 PDE6G (ENSMODG00000002709) #17 ENSMODG00000002699 #18 ENSMODG00000002690 #19 ENSMODG00000044508 FAAP100 (ENSMODG00000002672) #20 FSCN2 (ENSMODG00000002662) #21 ACTG1 (ENSMODG00000047420) #22 ENSMODG00000042503 SLC38A10 (ENSMODG00000002629) #25 NDUFAF8 (ENSMODG00000038456) #26 TEPSIN (ENSMODG00000002599) #27 ENSMODG00000027919 CEP131 (ENSMODG00000002589) #28 PVALEF (ENSMODG00000029228) #29 ENSMODG00000002559 #30 BAIAP2 (ENSMODG00000002521) #31 CHMP6 (ENSMODG00000051418) #32 RPTOR (ENSMODG00000002436) #33 ENSMODG00000023902 NPTX1 (ENSMODG00000044342) #35 ENDOV (ENSMODG00000002372) RNF213 (ENSMODG00000002357) Platypus MODERN SPECIES 45 ARHGDIA (ENSOANG00000043105) #8 P4HB (ENSOANG00000006117) #9 PPP1R27 (ENSOANG00000047327) #10 MCRIP1 (ENSOANG00000047679) GCGR (ENSOANG00000050606) ENSOANG00000022362 #11 MRPL12 (ENSOANG00000035985) #12 ENSOANG00000044154 #11 HGS (ENSOANG00000013033) #13 ENSOANG00000041410 #14 ENSOANG00000029084 #15 PDE6G (ENSOANG00000039095) #17 NPLOC4 (ENSOANG00000010555) #19 FAAP100 (ENSOANG00000041730) #20 FSCN2 (ENSOANG00000050676) #21 ACTG1 (ENSOANG00000048512) #22 BAHCC1 (ENSOANG00000042968) #23 ENSOANG00000005997 #25 NDUFAF8 (ENSOANG00000036287) #26 ENSOANG00000001675 #27 PVALEF (ENSOANG00000044313) #29 TRMT1 (ENSOANG00000045119) BAIAP2 (ENSOANG00000008319) #31 CHMP6 (ENSOANG00000008354) #32 RPTOR (ENSOANG00000039086) #33 NPTX1 (ENSOANG00000046964) #35 ENDOV (ENSOANG00000047965) ENSOANG00000045803 SLC26A11 (ENSOANG00000006546) SGSH (ENSOANG00000040684) CARD14 (ENSOANG00000005231) Sauria ANCESTRAL SPECIES 29 ENSGT00390000003718 ENSGT00950000183060.a.b.a ENSGT00940000163996 ENSGT00940000160989 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a.a ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00410000026495.C ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000164863 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT00940000166332 Archelosauria ANCESTRAL SPECIES 19 ENSGT00390000003718 ENSGT00950000183060.a.b.a ENSGT00940000163996 ENSGT00940000160989 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a.a ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00410000026495.C ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000164863 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Cryptodira ANCESTRAL SPECIES 21 ENSGT00390000003718 ENSGT00950000183060.a.b.a ENSGT00940000163996 ENSGT00940000160989 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a.a ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00410000026495.C ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000164863 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT00940000176115 Chinese turtle MODERN SPECIES 2017 ACTG1 (ENSPSIG00000002102) #22 Testudinoidea ANCESTRAL SPECIES 14 ENSGT00390000003718 ENSGT00950000183060.a.b.a ENSGT00940000163996 ENSGT00940000160989 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a.a ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00410000026495.C ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000164863 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Testudinidae ANCESTRAL SPECIES 18 ENSGT00940000155761 ENSGT00390000003718 ENSGT00950000183060.a.b.a ENSGT00940000163996 ENSGT00940000160989 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a.a ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000164863 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Goode s thornscrub tortoise MODERN SPECIES 6 SDK2 (ENSGEVG00005006134) ENSGEVG00005006280 TTYH2 (ENSGEVG00005006304) ENSGEVG00005006419 KIF19 (ENSGEVG00005006458) BTBD17 (ENSGEVG00005006577) GPR142 (ENSGEVG00005006600) GPRC5C (ENSGEVG00005006616) CCDC137 (ENSGEVG00005006627) #15 OXLD1 (ENSGEVG00005006642) #16 PDE6G (ENSGEVG00005006670) #17 TSPAN10 (ENSGEVG00005006706) #18 NPLOC4 (ENSGEVG00005006868) #19 FAAP100 (ENSGEVG00005006954) #20 FSCN2 (ENSGEVG00005006970) #21 ACTG1 (ENSGEVG00005006995) #22 BAHCC1 (ENSGEVG00005007067) #23 SLC38A10 (ENSGEVG00005007501) #25 NDUFAF8 (ENSGEVG00005007526) #26 TEPSIN (ENSGEVG00005007553) #27 CEP131 (ENSGEVG00005007648) #28 ENSGEVG00005007703 PVALEF (ENSGEVG00005007724) #29 AATK (ENSGEVG00005007785) #30 BAIAP2 (ENSGEVG00005008081) #31 CHMP6 (ENSGEVG00005008145) #32 RPTOR (ENSGEVG00005008258) #33 NPTX1 (ENSGEVG00005008576) #35 ENDOV (ENSGEVG00005008611) RNF213 (ENSGEVG00005008682) SLC26A11 (ENSGEVG00005008916) Abingdon island giant tortoise DUPLICATION Abingdon island giant tortoise MODERN SPECIES 1991 SDK2 (ENSCABG00000011804) RPL38 (ENSCABG00000011815) TTYH2 (ENSCABG00000011817) ENSCABG00000011837 KIF19 (ENSCABG00000011844) BTBD17 (ENSCABG00000011881) GPR142 (ENSCABG00000011892) GPRC5C (ENSCABG00000011895) CCDC137 (ENSCABG00000011897) #15 PDE6G (ENSCABG00000011899) #17 TSPAN10 (ENSCABG00000011902) #18 NPLOC4 (ENSCABG00000011932) #19 FAAP100 (ENSCABG00000012989) #20 ENSCABG00000012991 FSCN2 (ENSCABG00000012992) #21 ACTG1 (ENSCABG00000012993) #22 BAHCC1 (ENSCABG00000012995) #23 SLC38A10 (ENSCABG00000013002) #25 NDUFAF8 (ENSCABG00000013005) #26 TEPSIN (ENSCABG00000013007) #27 CEP131 (ENSCABG00000013012) #28 ENSCABG00000013024 PVALEF (ENSCABG00000013036) #29 AATK (ENSCABG00000013044) #30 BAIAP2 (ENSCABG00000013066) #31 ENSCABG00000013069 #32 RPTOR (ENSCABG00000013112) #33 NPTX1 (ENSCABG00000013920) #35 ENSCABG00000013956 ENSCABG00000013958 RNF213 (ENSCABG00000013979) Abingdon island giant tortoise MODERN SPECIES 2823 ENSCABG00000015117 #22 Emydidae ANCESTRAL SPECIES 17 ENSGT00390000003718 ENSGT00950000183060.a.b.a ENSGT00940000163996 ENSGT00940000160989 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a.a ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00410000026495.C ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000164863 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Three-toed box turtle MODERN SPECIES 90 ENSTMTG00000018493 SDK2 (ENSTMTG00000017996) RPL38 (ENSTMTG00000017943) TTYH2 (ENSTMTG00000017873) ENSTMTG00000017774 KIF19 (ENSTMTG00000017731) BTBD17 (ENSTMTG00000017702) GPR142 (ENSTMTG00000017687) GPRC5C (ENSTMTG00000017680) CCDC137 (ENSTMTG00000017662) #15 PDE6G (ENSTMTG00000017647) #17 TSPAN10 (ENSTMTG00000017442) #18 NPLOC4 (ENSTMTG00000016869) #19 ENSTMTG00000016815 FSCN2 (ENSTMTG00000016811) #21 ACTG1 (ENSTMTG00000016804) #22 ENSTMTG00000016790 BAHCC1 (ENSTMTG00000016732) #23 SLC38A10 (ENSTMTG00000016699) #25 NDUFAF8 (ENSTMTG00000016687) #26 TEPSIN (ENSTMTG00000016548) #27 CEP131 (ENSTMTG00000016521) #28 ENSTMTG00000016491 PVALEF (ENSTMTG00000016475) #29 AATK (ENSTMTG00000015694) #30 BAIAP2 (ENSTMTG00000015568) #31 CHMP6 (ENSTMTG00000015530) #32 RPTOR (ENSTMTG00000015477) #33 NPTX1 (ENSTMTG00000015455) #35 ENDOV (ENSTMTG00000015420) RNF213 (ENSTMTG00000014162) painted turtle DUPLICATION painted turtle MODERN SPECIES 663 ENSCPBG00000004627 #22 painted turtle MODERN SPECIES 696 RPL38 (ENSCPBG00000010293) TTYH2 (ENSCPBG00000010298) ENSCPBG00000010302 KIF19 (ENSCPBG00000010319) BTBD17 (ENSCPBG00000010366) GPR142 (ENSCPBG00000010367) GPRC5C (ENSCPBG00000010371) CCDC137 (ENSCPBG00000010378) #15 OXLD1 (ENSCPBG00000010380) #16 PDE6G (ENSCPBG00000010382) #17 TSPAN10 (ENSCPBG00000010385) #18 NPLOC4 (ENSCPBG00000010388) #19 ENSCPBG00000010394 FAAP100 (ENSCPBG00000010399) #20 FSCN2 (ENSCPBG00000010404) #21 ACTG1 (ENSCPBG00000010407) #22 BAHCC1 (ENSCPBG00000010417) #23 SLC38A10 (ENSCPBG00000010435) #25 NDUFAF8 (ENSCPBG00000010445) #26 TEPSIN (ENSCPBG00000010446) #27 CEP131 (ENSCPBG00000010453) #28 ENSCPBG00000010470 AATK (ENSCPBG00000010476) #30 BAIAP2 (ENSCPBG00000010487) #31 CHMP6 (ENSCPBG00000010494) #32 RPTOR (ENSCPBG00000010503) #33 NPTX1 (ENSCPBG00000010522) #35 ENDOV (ENSCPBG00000010525) RNF213 (ENSCPBG00000010607) SLC26A11 (ENSCPBG00000010815) SGSH (ENSCPBG00000010832) Archosauria ANCESTRAL SPECIES 12 ENSGT00950000183060.a.b.a ENSGT00940000163996 ENSGT00940000161939 ENSGT00940000160989 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a.a ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00410000026495.C ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000164863 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b Australian saltwater crocodile MODERN SPECIES 47 SDK2 (ENSCPRG00005018431) RPL38 (ENSCPRG00005018419) TTYH2 (ENSCPRG00005018414) DNAI2 (ENSCPRG00005018412) KIF19 (ENSCPRG00005018407) BTBD17 (ENSCPRG00005018405) GPR142 (ENSCPRG00005018403) GPRC5C (ENSCPRG00005018401) CCDC137 (ENSCPRG00005018398) #15 ENSCPRG00005018396 #16 PDE6G (ENSCPRG00005018393) #17 TSPAN10 (ENSCPRG00005018392) #18 NPLOC4 (ENSCPRG00005018390) #19 FAAP100 (ENSCPRG00005018387) #20 FSCN2 (ENSCPRG00005018383) #21 ACTG1 (ENSCPRG00005018381) #22 BAHCC1 (ENSCPRG00005018363) #23 SLC38A10 (ENSCPRG00005018357) #25 NDUFAF8 (ENSCPRG00005018355) #26 TEPSIN (ENSCPRG00005018351) #27 CEP131 (ENSCPRG00005018343) #28 ENSCPRG00005018338 PVALEF (ENSCPRG00005018330) #29 AATK (ENSCPRG00005018324) #30 BAIAP2 (ENSCPRG00005018316) #31 CHMP6 (ENSCPRG00005018314) #32 RPTOR (ENSCPRG00005018247) #33 NPTX1 (ENSCPRG00005018220) #35 ENDOV (ENSCPRG00005018217) ENSCPRG00005018216 RNF213 (ENSCPRG00005018139) Aves ANCESTRAL SPECIES 17 ENSGT00950000183060.a.b.a ENSGT00940000163996 ENSGT00940000161939 ENSGT00940000160989 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a.a ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00410000026495.C ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000164863 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 African ostrich MODERN SPECIES 554 CCDC137 (ENSSCUG00000007480) #15 OXLD1 (ENSSCUG00000007482) #16 NPLOC4 (ENSSCUG00000007496) #19 FAAP100 (ENSSCUG00000007524) #20 ACTG1 (ENSSCUG00000007527) #22 Neognathae ANCESTRAL SPECIES 17 ENSGT00950000183060.a.b.a ENSGT00940000163996 ENSGT00940000161939 ENSGT00940000160989 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a.a ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00410000026495.C ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000164863 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 Galloanserae ANCESTRAL SPECIES 19 ENSGT00390000003718 ENSGT00950000183060.a.b.a ENSGT00940000163996 ENSGT00940000161939 ENSGT00940000160989 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a.a ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000164863 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541.h #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 Anatidae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b #22 Duck MODERN SPECIES 1456 ENSAPLG00000020856 #22 Phasianidae ANCESTRAL SPECIES 18 ENSGT00940000155761 ENSGT00390000003718 ENSGT00950000183060.a.b.a ENSGT00940000163996 ENSGT00940000160989 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a.a ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000164863 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541.h #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 Phasianidae_b ANCESTRAL SPECIES 25 ENSGT00390000003718 ENSGT00950000183060.a.b.a ENSGT00940000163996 ENSGT00940000160989 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a.a ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00940000178574 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000164863 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541.h #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT00960000189412 ENSGT01070000253775.b ENSGT00390000013080 Chicken MODERN SPECIES 9 RPL38 (ENSGALG00010029495) TTYH2 (ENSGALG00010029496) DNAI2 (ENSGALG00010029497) KIF19 (ENSGALG00010029499) BTBD17 (ENSGALG00010029502) GPR142 (ENSGALG00010029504) GPRC5C (ENSGALG00010030106) OXLD1 (ENSGALG00010029506) #16 ENSGALG00010029508 PDE6G (ENSGALG00010029510) #17 TSPAN10 (ENSGALG00010029512) #18 NPLOC4 (ENSGALG00010029515) #19 ENSGALG00010029516 FAAP100 (ENSGALG00010029518) #20 FSCN2 (ENSGALG00010029523) #21 ACTG1 (ENSGALG00010029521) #22 SLC38A10 (ENSGALG00010029525) #25 NDUFAF8 (ENSGALG00010029527) #26 TEPSIN (ENSGALG00010029529) #27 CEP131 (ENSGALG00010029531) #28 ENSGALG00010029541 AATK (ENSGALG00010029542) #30 BAIAP2 (ENSGALG00010029548) #31 CHMP6 (ENSGALG00010029550) #32 RPTOR (ENSGALG00010030107) #33 NPTX1 (ENSGALG00010029556) #35 ENDOV (ENSGALG00010029298) RNF213 (ENSGALG00010029301) ENSGALG00010029302 SLC26A11 (ENSGALG00010029303) SGSH (ENSGALG00010029307) Japanese quail DUPLICATION Japanese quail MODERN SPECIES 14 PCNA (ENSCJPG00005011978) CDS2 (ENSCJPG00005011977) ARHGAP25 (ENSCJPG00005011976) BMP10 (ENSCJPG00005011975) GKN2 (ENSCJPG00005011974) ENSCJPG00005011972 ANTXR1 (ENSCJPG00005011971) GFPT1 (ENSCJPG00005011966) NFU1 (ENSCJPG00005011959) ENSCJPG00005011958 ENSCJPG00005011957 AAK1 (ENSCJPG00005011953) NCAPH (ENSCJPG00005011952) ENSCJPG00005011951 STAMBP (ENSCJPG00005011948) ENSCJPG00005011946 #22 ENSCJPG00005011945 TET3 (ENSCJPG00005011943) ENSCJPG00005011942 MOB1A (ENSCJPG00005011941) ENSCJPG00005011940 SLC4A5 (ENSCJPG00005011938) ENSCJPG00005011937 TACR1 (ENSCJPG00005011936) ARID5A (ENSCJPG00005011934) KANSL3 (ENSCJPG00005011882) LMAN2L (ENSCJPG00005011858) ENSCJPG00005011855 ENSCJPG00005011852 ANKRD39 (ENSCJPG00005011851) SEMA4C (ENSCJPG00005011849) Japanese quail MODERN SPECIES 9 ENSCJPG00005021261 CDC42EP4 (ENSCJPG00005021259) SDK2 (ENSCJPG00005021258) TTYH2 (ENSCJPG00005021257) ENSCJPG00005021256 BTBD17 (ENSCJPG00005021254) GPR142 (ENSCJPG00005021253) GPRC5C (ENSCJPG00005021252) CCDC137 (ENSCJPG00005021251) #15 OXLD1 (ENSCJPG00005021250) #16 PDE6G (ENSCJPG00005021249) #17 TSPAN10 (ENSCJPG00005021248) #18 NPLOC4 (ENSCJPG00005021247) #19 FAAP100 (ENSCJPG00005021246) #20 FSCN2 (ENSCJPG00005021245) #21 ACTG1 (ENSCJPG00005021244) #22 BAHCC1 (ENSCJPG00005021242) #23 SLC38A10 (ENSCJPG00005021240) #25 NDUFAF8 (ENSCJPG00005021239) #26 TEPSIN (ENSCJPG00005021238) #27 CEP131 (ENSCJPG00005021237) #28 ENSCJPG00005021236 AATK (ENSCJPG00005021234) #30 BAIAP2 (ENSCJPG00005021233) #31 CHMP6 (ENSCJPG00005021232) #32 RPTOR (ENSCJPG00005021221) #33 NPTX1 (ENSCJPG00005021200) #35 ENDOV (ENSCJPG00005021197) RNF213 (ENSCJPG00005021196) SLC26A11 (ENSCJPG00005021195) SGSH (ENSCJPG00005021194) Neognathae_b ANCESTRAL SPECIES 19 ENSGT00940000155761 ENSGT00390000003718 ENSGT00950000183060.a.b.a ENSGT00940000163996 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a.a ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00410000026495.C ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 ENSGT00940000159355 Passeriformes ANCESTRAL SPECIES 17 ENSGT00940000155761 ENSGT00390000003718 ENSGT00950000183060.a.b.a ENSGT00940000163996 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a.a ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00410000026495.C ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 ENSGT00940000159355 Passeriformes_d ANCESTRAL SPECIES 17 ENSGT00940000161435.b ENSGT00940000155761 ENSGT00390000003718 ENSGT00950000183060.a.b.a ENSGT00940000163996 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a.a ENSGT00390000004169 #15 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00410000026495.C ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 ENSGT00940000159355 ENSGT00440000035688 Passeriformes_g ANCESTRAL SPECIES 20 ENSGT00940000155761 ENSGT00940000162882 ENSGT00940000161435.b ENSGT00390000003718 ENSGT00950000183060.a.b.a ENSGT00940000163996 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a.a ENSGT00390000004169 #15 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C.c ENSGT01070000253775.b ENSGT00390000013080 ENSGT00940000159355 ENSGT00440000035688 Passeroidea ANCESTRAL SPECIES 19 ENSGT00940000155761 ENSGT00940000162882 ENSGT00940000161435.b ENSGT00390000003718 ENSGT00950000183060.a.b.a ENSGT00940000163996 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a.a ENSGT00390000004169 #15 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C.c ENSGT01070000253775.b ENSGT00390000013080 ENSGT00940000159355 ENSGT00440000035688 Zebra finch MODERN SPECIES 9 ENSTGUG00000002918 ENSTGUG00000022100 CDC42EP4 (ENSTGUG00000022526) RPL38 (ENSTGUG00000028267) TTYH2 (ENSTGUG00000002939) ENSTGUG00000021226 BTBD17 (ENSTGUG00000002937) GPR142 (ENSTGUG00000027421) GPRC5C (ENSTGUG00000002949) CCDC137 (ENSTGUG00000002950) #15 PDE6G (ENSTGUG00000023137) #17 TSPAN10 (ENSTGUG00000002947) #18 NPLOC4 (ENSTGUG00000002958) #19 FAAP100 (ENSTGUG00000017013) #20 FSCN2 (ENSTGUG00000014701) #21 ACTG1 (ENSTGUG00000023431) #22 BAHCC1 (ENSTGUG00000019540) #23 SLC38A10 (ENSTGUG00000002960) #25 TEPSIN (ENSTGUG00000002968) #27 CEP131 (ENSTGUG00000002972) #28 AATK (ENSTGUG00000022357) #30 BAIAP2 (ENSTGUG00000002986) #31 CHMP6 (ENSTGUG00000003019) #32 RPTOR (ENSTGUG00000003028) #33 ENSTGUG00000020930 ENSTGUG00000025432 ENSTGUG00000026155 NPTX1 (ENSTGUG00000025297) #35 ENDOV (ENSTGUG00000022138) RNF213 (ENSTGUG00000003069) SLC26A11 (ENSTGUG00000003079) Great tit MODERN SPECIES 8 ENSPMJG00000017053 ENSPMJG00000017052 RPL38 (ENSPMJG00000017050) TTYH2 (ENSPMJG00000017049) ENSPMJG00000017048 GPR142 (ENSPMJG00000017047) BTBD17 (ENSPMJG00000017046) GPRC5C (ENSPMJG00000017045) CCDC137 (ENSPMJG00000017044) #15 OXLD1 (ENSPMJG00000017043) #16 TSPAN10 (ENSPMJG00000017042) #18 NPLOC4 (ENSPMJG00000017041) #19 ENSPMJG00000017040 FAAP100 (ENSPMJG00000017039) #20 FSCN2 (ENSPMJG00000017038) #21 ACTG1 (ENSPMJG00000017037) #22 BAHCC1 (ENSPMJG00000017036) #23 SLC38A10 (ENSPMJG00000017034) #25 NDUFAF8 (ENSPMJG00000017033) #26 CEP131 (ENSPMJG00000017032) #28 AATK (ENSPMJG00000017031) #30 BAIAP2 (ENSPMJG00000017030) #31 CHMP6 (ENSPMJG00000017029) #32 RPTOR (ENSPMJG00000016723) #33 NPTX1 (ENSPMJG00000016712) #35 ENDOV (ENSPMJG00000016711) RNF213 (ENSPMJG00000016710) SLC26A11 (ENSPMJG00000016640) SGSH (ENSPMJG00000016639) GAA (ENSPMJG00000016638) CCDC40 (ENSPMJG00000016637) Neognathae_c ANCESTRAL SPECIES 23 ENSGT00940000161435.b ENSGT00390000003718 ENSGT00950000183060.a.b.a ENSGT00940000163996 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a.a ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00410000026495.C ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 ENSGT00940000159355 Kakapo MODERN SPECIES 8 FAM104B (ENSSHBG00005014724) ENSSHBG00005014727 CPSF4L (ENSSHBG00005014734) CDC42EP4 (ENSSHBG00005014740) ENSSHBG00005014818 BTBD17 (ENSSHBG00005014828) GPR142 (ENSSHBG00005014833) GPRC5C (ENSSHBG00005014842) CCDC137 (ENSSHBG00005014847) #15 OXLD1 (ENSSHBG00005014852) #16 TSPAN10 (ENSSHBG00005014871) #18 ENSSHBG00005014945 ##17 NPLOC4 (ENSSHBG00005014954) #19 FAAP100 (ENSSHBG00005014957) #20 FSCN2 (ENSSHBG00005014968) #21 ACTG1 (ENSSHBG00005014976) #22 BAHCC1 (ENSSHBG00005014985) #23 SLC38A10 (ENSSHBG00005015005) #25 NDUFAF8 (ENSSHBG00005015023) #26 TEPSIN (ENSSHBG00005015035) #27 CEP131 (ENSSHBG00005015057) #28 AATK (ENSSHBG00005015074) #30 BAIAP2 (ENSSHBG00005015093) #31 CHMP6 (ENSSHBG00005015111) #32 RPTOR (ENSSHBG00005015146) #33 NPTX1 (ENSSHBG00005015241) #35 ENDOV (ENSSHBG00005015251) ENSSHBG00005015263 SLC26A11 (ENSSHBG00005015273) SGSH (ENSSHBG00005015281) GAA (ENSSHBG00005015294) Golden eagle MODERN SPECIES 21 ENSACCG00020006974 RPL38 (ENSACCG00020007266) TTYH2 (ENSACCG00020007296) ENSACCG00020007341 BTBD17 (ENSACCG00020007357) GPR142 (ENSACCG00020007362) GPRC5C (ENSACCG00020007373) CCDC137 (ENSACCG00020007386) #15 OXLD1 (ENSACCG00020007434) #16 PDE6G (ENSACCG00020007441) #17 TSPAN10 (ENSACCG00020007461) #18 NPLOC4 (ENSACCG00020007475) #19 ENSACCG00020007489 FAAP100 (ENSACCG00020007501) #20 FSCN2 (ENSACCG00020007517) #21 ACTG1 (ENSACCG00020007529) #22 SLC38A10 (ENSACCG00020007579) #25 ENSACCG00020007590 CEP131 (ENSACCG00020007618) #28 AATK (ENSACCG00020007683) #30 BAIAP2 (ENSACCG00020007721) #31 CHMP6 (ENSACCG00020007755) #32 RPTOR (ENSACCG00020007798) #33 NPTX1 (ENSACCG00020007840) #35 ENDOV (ENSACCG00020007852) RNF213 (ENSACCG00020007962) SLC26A11 (ENSACCG00020008054) SGSH (ENSACCG00020008072) GAA (ENSACCG00020008084) CCDC40 (ENSACCG00020008103) TBC1D16 (ENSACCG00020008128) Lepidosauria ANCESTRAL SPECIES 28 ENSGT00390000003718 ENSGT00950000183060.a.b.a ENSGT00940000163996 ENSGT00940000160989 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a.a ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00410000026495.C ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000164863 ENSGT00930000151136 #29 ENSGT01000000214817 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT00940000166332 tuatara MODERN SPECIES 1429 SDK2 (ENSSPUG00000014704) RPL38 (ENSSPUG00000014689) ENSSPUG00000014674 ENSSPUG00000014667 ENSSPUG00000014525 KIF19 (ENSSPUG00000014465) BTBD17 (ENSSPUG00000014452) GPR142 (ENSSPUG00000014444) GPRC5C (ENSSPUG00000014438) ENSSPUG00000014428 OXLD1 (ENSSPUG00000014424) #16 PDE6G (ENSSPUG00000014412) #17 NPLOC4 (ENSSPUG00000014398) #19 FAAP100 (ENSSPUG00000014384) #20 FSCN2 (ENSSPUG00000014373) #21 ACTG1 (ENSSPUG00000014350) #22 SLC38A10 (ENSSPUG00000014138) #25 NDUFAF8 (ENSSPUG00000014125) #26 TEPSIN (ENSSPUG00000014097) #27 CEP131 (ENSSPUG00000013812) #28 ENSSPUG00000013729 PVALEF (ENSSPUG00000013713) #29 AATK (ENSSPUG00000013670) #30 BAIAP2 (ENSSPUG00000013638) #31 CHMP6 (ENSSPUG00000013628) #32 RPTOR (ENSSPUG00000013588) #33 NPTX1 (ENSSPUG00000013566) #35 ENSSPUG00000013560 ENSSPUG00000013553 RNF213 (ENSSPUG00000012583) SLC26A11 (ENSSPUG00000012245) Episquamata ANCESTRAL SPECIES 4 ENSGT00390000003718 ENSGT00950000183060.a.b.a ENSGT00940000163996 ENSGT00940000160989 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a.a ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00410000026495.C ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT01000000214817 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00940000176115 ENSGT00940000168473 ENSGT00940000173590 Laterata ANCESTRAL SPECIES 1 ENSGT00390000003718 ENSGT00950000183060.a.b.a ENSGT00940000163996 ENSGT00940000160989 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a.a ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00410000026495.C ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT01000000214817 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT00940000166332 ENSGT01070000253775.b Common wall lizard MODERN SPECIES 10 RPL38 (ENSPMRG00000001563) TTYH2 (ENSPMRG00000001593) ENSPMRG00000001633 KIF19 (ENSPMRG00000001657) BTBD17 (ENSPMRG00000001687) GPR142 (ENSPMRG00000001702) GPRC5C (ENSPMRG00000001711) CCDC137 (ENSPMRG00000001720) #15 OXLD1 (ENSPMRG00000001733) #16 PDE6G (ENSPMRG00000001738) #17 TSPAN10 (ENSPMRG00000001748) #18 NPLOC4 (ENSPMRG00000001757) #19 ENSPMRG00000001770 FAAP100 (ENSPMRG00000001774) #20 FSCN2 (ENSPMRG00000001780) #21 ACTG1 (ENSPMRG00000001793) #22 ENSPMRG00000001804 BAHCC1 (ENSPMRG00000001809) #23 SLC38A10 (ENSPMRG00000001828) #25 NDUFAF8 (ENSPMRG00000001833) #26 TEPSIN (ENSPMRG00000001835) #27 CEP131 (ENSPMRG00000001857) #28 ENSPMRG00000001909 AATK (ENSPMRG00000001916) #30 ENSPMRG00000001929 BAIAP2 (ENSPMRG00000001940) #31 ENSPMRG00000001985 #32 ENSPMRG00000002009 #33 ENSPMRG00000002016 ENSPMRG00000002022 ENSPMRG00000002026 Argentine black and white tegu MODERN SPECIES 40 RPL38 (ENSSMRG00000004873) TTYH2 (ENSSMRG00000004854) ENSSMRG00000004837 KIF19 (ENSSMRG00000004810) BTBD17 (ENSSMRG00000004794) GPR142 (ENSSMRG00000004708) GPRC5C (ENSSMRG00000004706) CCDC137 (ENSSMRG00000004705) #15 OXLD1 (ENSSMRG00000004704) #16 PDE6G (ENSSMRG00000004701) #17 TSPAN10 (ENSSMRG00000004699) #18 NPLOC4 (ENSSMRG00000004695) #19 ENSSMRG00000004694 FAAP100 (ENSSMRG00000004686) #20 FSCN2 (ENSSMRG00000004642) #21 ACTG1 (ENSSMRG00000004633) #22 BAHCC1 (ENSSMRG00000004594) #23 SLC38A10 (ENSSMRG00000004545) #25 NDUFAF8 (ENSSMRG00000004543) #26 TEPSIN (ENSSMRG00000004541) #27 CEP131 (ENSSMRG00000003923) #28 ENSSMRG00000003914 AATK (ENSSMRG00000003901) #30 BAIAP2 (ENSSMRG00000003884) #31 CHMP6 (ENSSMRG00000003879) #32 RPTOR (ENSSMRG00000003815) #33 NPTX1 (ENSSMRG00000003716) #35 ENSSMRG00000003701 ENDOV (ENSSMRG00000003696) ENSSMRG00000003671 ENSSMRG00000003668 Toxicofera ANCESTRAL SPECIES 3 ENSGT00390000003718 ENSGT00950000183060.a.b.a ENSGT00940000163996 ENSGT00940000160989 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a.a ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00410000026495.C ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT01000000214817 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00940000176115 ENSGT00940000168473 ENSGT00940000173590 Lizard MODERN SPECIES 1 RPL38 (ENSACAG00000014849) TTYH2 (ENSACAG00000014858) ENSACAG00000014959 KIF19 (ENSACAG00000015003) BTBD17 (ENSACAG00000040690) GPR142 (ENSACAG00000015064) ENSACAG00000015071 CCDC137 (ENSACAG00000015090) #15 OXLD1 (ENSACAG00000025450) #16 PDE6G (ENSACAG00000015103) #17 TSPAN10 (ENSACAG00000015105) #18 NPLOC4 (ENSACAG00000015119) #19 FAAP100 (ENSACAG00000015174) #20 FSCN2 (ENSACAG00000015216) #21 ENSACAG00000036955 ACTG1 (ENSACAG00000015238) #22 ENSACAG00000015255 #23 SLC38A10 (ENSACAG00000015300) #25 ENSACAG00000045452 TEPSIN (ENSACAG00000015343) #27 CEP131 (ENSACAG00000015365) #28 ENSACAG00000040755 AATK (ENSACAG00000015391) #30 BAIAP2 (ENSACAG00000015422) #31 CHMP6 (ENSACAG00000015507) #32 ENSACAG00000015535 #33 ENSACAG00000045146 ENSACAG00000037459 ENSACAG00000044743 #33 ENSACAG00000039976 ENSACAG00000015624 #35 Elapidae ANCESTRAL SPECIES 2 ENSGT00390000003718 ENSGT00950000183060.a.b.a ENSGT00940000163996 ENSGT00940000160989 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a.a ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00410000026495.C ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT01000000214817 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a.d #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00940000176115 ENSGT00940000168473 ENSGT00940000173590 Indian cobra MODERN SPECIES 1 RPL38 (ENSNNAG00000001952) TTYH2 (ENSNNAG00000001799) ENSNNAG00000001706 KIF19 (ENSNNAG00000001661) BTBD17 (ENSNNAG00000001638) GPR142 (ENSNNAG00000001631) GPRC5C (ENSNNAG00000001605) CCDC137 (ENSNNAG00000001587) #15 OXLD1 (ENSNNAG00000001579) #16 PDE6G (ENSNNAG00000001570) #17 TSPAN10 (ENSNNAG00000001534) #18 NPLOC4 (ENSNNAG00000001495) #19 ENSNNAG00000001481 FAAP100 (ENSNNAG00000001438) #20 FSCN2 (ENSNNAG00000001400) #21 ACTG1 (ENSNNAG00000001371) #22 BAHCC1 (ENSNNAG00000001331) #23 SLC38A10 (ENSNNAG00000001280) #25 ENSNNAG00000001255 TEPSIN (ENSNNAG00000001091) #27 CEP131 (ENSNNAG00000000897) #28 ENSNNAG00000000797 AATK (ENSNNAG00000000777) #30 BAIAP2 (ENSNNAG00000000704) #31 CHMP6 (ENSNNAG00000000671) #32 RPTOR (ENSNNAG00000000654) #33 NPTX1 (ENSNNAG00000000632) #35 ENSNNAG00000000620 ENSNNAG00000000610 ENSNNAG00000000599 RNF213 (ENSNNAG00000000531) Elapidae_a ANCESTRAL SPECIES 18 ENSGT00390000003718 ENSGT00950000183060.a.b.a ENSGT00940000163996 ENSGT00940000160989 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a.a ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00410000026495.C ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT01000000214817 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a.d #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00940000173590 ENSGT00630000089884.C ENSGT01070000253775.b Blue-lipped sea krait MODERN SPECIES 1500 ACTG1 (ENSLLTG00000001326) #22 Acanthophiinae ANCESTRAL SPECIES 18 ENSGT00390000003718 ENSGT00950000183060.a.b.a ENSGT00940000163996 ENSGT00940000160989 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a.a ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00410000026495.C ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT01000000214817 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a.d #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00940000173590 ENSGT00630000089884.C ENSGT01070000253775.b Eastern brown snake MODERN SPECIES 17 SDK2 (ENSPTXG00000005262) RPL38 (ENSPTXG00000005267) TTYH2 (ENSPTXG00000005269) ENSPTXG00000005272 KIF19 (ENSPTXG00000005276) BTBD17 (ENSPTXG00000005278) GPR142 (ENSPTXG00000005279) GPRC5C (ENSPTXG00000005280) CCDC137 (ENSPTXG00000005281) #15 PDE6G (ENSPTXG00000005282) #17 TSPAN10 (ENSPTXG00000005283) #18 NPLOC4 (ENSPTXG00000005292) #19 ENSPTXG00000005295 FAAP100 (ENSPTXG00000005297) #20 FSCN2 (ENSPTXG00000005299) #21 ACTG1 (ENSPTXG00000005301) #22 BAHCC1 (ENSPTXG00000005303) #23 SLC38A10 (ENSPTXG00000002739) #25 NDUFAF8 (ENSPTXG00000002743) #26 TEPSIN (ENSPTXG00000002744) #27 CEP131 (ENSPTXG00000002746) #28 ENSPTXG00000002748 AATK (ENSPTXG00000002750) #30 BAIAP2 (ENSPTXG00000002757) #31 CHMP6 (ENSPTXG00000002759) #32 RPTOR (ENSPTXG00000002760) #33 NPTX1 (ENSPTXG00000002771) #35 ENDOV (ENSPTXG00000002776) ENSPTXG00000002778 RNF213 (ENSPTXG00000002807) ENSPTXG00000003206 Mainland tiger snake MODERN SPECIES 77 SDK2 (ENSNSUG00000009908) RPL38 (ENSNSUG00000009906) TTYH2 (ENSNSUG00000009897) ENSNSUG00000009895 KIF19 (ENSNSUG00000009894) BTBD17 (ENSNSUG00000009893) GPR142 (ENSNSUG00000009892) GPRC5C (ENSNSUG00000009891) CCDC137 (ENSNSUG00000009890) #15 OXLD1 (ENSNSUG00000009889) #16 PDE6G (ENSNSUG00000009888) #17 TSPAN10 (ENSNSUG00000009887) #18 NPLOC4 (ENSNSUG00000009751) #19 FAAP100 (ENSNSUG00000009749) #20 FSCN2 (ENSNSUG00000009748) #21 ACTG1 (ENSNSUG00000009747) #22 BAHCC1 (ENSNSUG00000009745) #23 SLC38A10 (ENSNSUG00000009606) #25 NDUFAF8 (ENSNSUG00000009605) #26 TEPSIN (ENSNSUG00000009555) #27 CEP131 (ENSNSUG00000009547) #28 ENSNSUG00000009544 AATK (ENSNSUG00000009461) #30 ENSNSUG00000009457 #31 ENSNSUG00000009456 #31 Anura ANCESTRAL SPECIES 73 ENSGT00390000003718 ENSGT00950000183060.a.b.a ENSGT00940000163996 ENSGT00940000160989 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a.b.b ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00410000026495.C ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000164863 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 Leishan spiny toad MODERN SPECIES 3 TTYH2 (ENSLLEG00000030260) ENSLLEG00000030307 KIF19 (ENSLLEG00000030339) BTBD17 (ENSLLEG00000030376) GPR142 (ENSLLEG00000030384) ENSLLEG00000030390 ENSLLEG00000030395 CCDC137 (ENSLLEG00000030398) #15 ENSLLEG00000030405 PDE6G (ENSLLEG00000030413) #17 TSPAN10 (ENSLLEG00000030419) #18 NPLOC4 (ENSLLEG00000030428) #19 ENSLLEG00000030442 FAAP100 (ENSLLEG00000030450) #20 FSCN2 (ENSLLEG00000030457) #21 ACTG1 (ENSLLEG00000030465) #22 ENSLLEG00000030473 ENSLLEG00000030477 ENSLLEG00000030482 BAHCC1 (ENSLLEG00000030501) #23 ENSLLEG00000030542 SLC38A10 (ENSLLEG00000030549) #25 ENSLLEG00000030565 TEPSIN (ENSLLEG00000030595) #27 CEP131 (ENSLLEG00000030646) #28 ENSLLEG00000030662 AATK (ENSLLEG00000030671) #30 BAIAP2 (ENSLLEG00000030688) #31 ENSLLEG00000030711 TBC1D16 (ENSLLEG00000030725) ENSLLEG00000030736 Coelacanth MODERN SPECIES 257 SGSH (ENSLACG00000017726) CARD14 (ENSLACG00000017738) GAA (ENSLACG00000017791) CCDC40 (ENSLACG00000017837) TBC1D16 (ENSLACG00000017883) CBX4 (ENSLACG00000017972) CBX8 (ENSLACG00000018000) CBX2 (ENSLACG00000018020) ENPP7 (ENSLACG00000018032) RBFOX3 (ENSLACG00000018409) ENGASE (ENSLACG00000018454) NPLOC4 (ENSLACG00000018468) #19 si:dkey-282h22.5 (ENSLACG00000018490) FAAP100 (ENSLACG00000018494) #20 FSCN2 (ENSLACG00000018521) #21 ACTG1 (ENSLACG00000018533) #22 Actinopterygii ANCESTRAL SPECIES 138 ENSGT01050000244891.B ENSGT00940000158690 ENSGT00940000165400 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00950000182960.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00390000002762.a.b ENSGT00390000010052.a ENSGT00940000156701 ENSGT00390000013127.b ENSGT00940000156643 ENSGT00950000182906.a.a.a Neopterygii ANCESTRAL SPECIES 6 ENSGT00940000162543 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000160705.C.b ENSGT00390000002752 ENSGT00940000158127 ENSGT01050000244891.B ENSGT00940000158690 ENSGT00940000165400 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00950000182960.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00390000002762.a.b ENSGT00400000022459 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00390000013127.b ENSGT00940000156643 Osteoglossocephalai ANCESTRAL SPECIES 186 ENSGT00940000158690 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00950000182960.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00390000002762.a.b ENSGT00400000022459 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00390000013127.b ENSGT00940000156643 Clupeocephala ANCESTRAL SPECIES 122 ENSGT00940000157636 ENSGT00940000158573 ENSGT00940000157747 ENSGT00950000182958.b.a.b ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000158690 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.b ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A ENSGT00940000167865 ENSGT00950000182935.B.b.d.b ENSGT00940000156666 Otomorpha ANCESTRAL SPECIES 307 ENSGT00530000064157.a ENSGT00550000075029 ENSGT00940000167465 ENSGT00940000165262 ENSGT00940000157752 ENSGT00390000014423 ENSGT00390000002127.b ENSGT00950000182960.a.a.a.b #22 ENSGT00390000015109 ENSGT00950000182898.a.b.p ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.e ENSGT00940000167865 ENSGT00950000182935.B.b.d.b ENSGT00940000156666 ENSGT00940000159416 ENSGT00940000156254.o.a ENSGT00940000157932.m.b ENSGT00940000158025.a.b Otophysi ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b #22 Cyprinoidei ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b #22 Cyprininae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b #22 Cyprininae_a ANCESTRAL SPECIES 21 ENSGT00940000156614.b.g ENSGT00550000074913.i.c ENSGT00940000157636.c.d ENSGT00940000158573.l ENSGT00940000157747.y.b ENSGT00950000182958.b.a.b.c.b.a ENSGT00940000159507.d ENSGT00390000017592.i ENSGT00940000157972.c.b ENSGT00940000155537.g ENSGT00950000183183.b.b.c ENSGT00940000158690.e.a ENSGT01030000234534.C ENSGT00510000048032.k ENSGT00950000183157.a.a.b.o.b.a ##21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000157099.t ENSGT00950000182898.a.b.o.b ENSGT00940000165557.i ENSGT00940000155520.wb ENSGT00390000014300.m ENSGT00390000018509.a.r ENSGT00390000002762.a.b.m ENSGT00390000010052.a.a ENSGT00940000156701.a ENSGT00940000156643.a ENSGT00390000014178.a ENSGT00950000182935.B.b.d.a.a ENSGT00390000001979.e.a ENSGT00940000153340.A.l ENSGT00940000155335.t.a Golden-line barbel MODERN SPECIES 36 eif3ba (ENSSGRG00000021723) gna12a (ENSSGRG00000021746) CARD11 (ENSSGRG00000021748) SDK1 (ENSSGRG00000022161) cyp3c4 (ENSSGRG00000022236) foxk1 (ENSSGRG00000022494) ap5z1 (ENSSGRG00000022504) mmd2a (ENSSGRG00000022508) wipi2 (ENSSGRG00000022548) arpc1b (ENSSGRG00000023235) arpc1b (ENSSGRG00000023237) arpc1a (ENSSGRG00000023238) smurf1 (ENSSGRG00000023320) ENSSGRG00000024121 fscn1a (ENSSGRG00000024122) ##21 ENSSGRG00000024123 #22 TNRC18 (ENSSGRG00000024124) slc29a4a (ENSSGRG00000024125) bud31 (ENSSGRG00000024126) shmt1 (ENSSGRG00000024138) smcr8a (ENSSGRG00000024304) TOP3A (ENSSGRG00000024311) flii (ENSSGRG00000024630) znf598 (ENSSGRG00000025187) syngr3a (ENSSGRG00000025188) gfer (ENSSGRG00000025189) drg2 (ENSSGRG00000025197) MYO15A (ENSSGRG00000025371) llgl1 (ENSSGRG00000025389) ENSSGRG00000026192 ENSSGRG00000026194 Characiphysae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b #22 Channel catfish MODERN SPECIES 6 ENSIPUG00000004351 camta2 (ENSIPUG00000004357) zgc:85858 (ENSIPUG00000004408) ENSIPUG00000004417 eno3 (ENSIPUG00000004425) pfn1 (ENSIPUG00000004437) Trappc1 (ENSIPUG00000004447) ENSIPUG00000004472 KIF1C (ENSIPUG00000004488) actl6b (ENSIPUG00000004516) ATP1B2 (ENSIPUG00000004548) ENSIPUG00000004585 plod3 (ENSIPUG00000004617) ENSIPUG00000004698 ENSIPUG00000004716 ENSIPUG00000004735 #22 ENSIPUG00000004740 spo11 (ENSIPUG00000004757) ENSIPUG00000004790 baz2a (ENSIPUG00000004817) edem2 (ENSIPUG00000004869) prpf6 (ENSIPUG00000004912) ENSIPUG00000004965 uckl1 (ENSIPUG00000004997) zbtb46 (ENSIPUG00000005116) ENSIPUG00000005139 lmod3 (ENSIPUG00000005162) naa10 (ENSIPUG00000005190) DDX23 (ENSIPUG00000005247) birc7 (ENSIPUG00000005286) ENSIPUG00000005321 Clupeiformes ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b #22 Denticle herring MODERN SPECIES 13 ENSDCDG00000001561 ENSDCDG00000001559 SLC5A10 (ENSDCDG00000001521) syngr3b (ENSDCDG00000001509) ENSDCDG00000001502 ENSDCDG00000001500 ENSDCDG00000001499 smcr8b (ENSDCDG00000001498) mief2 (ENSDCDG00000001495) alkbh5 (ENSDCDG00000001494) ybx1 (ENSDCDG00000001491) ENSDCDG00000001490 ENSDCDG00000001482 ENSDCDG00000001478 ##21 ACTG1 (ENSDCDG00000001471) #22 fbxl18 (ENSDCDG00000001465) hapstr1b (ENSDCDG00000001463) ENSDCDG00000001462 ENSDCDG00000001461 ENSDCDG00000003778 ENSDCDG00000003766 ENSDCDG00000003764 ENSDCDG00000003760 ENSDCDG00000003759 socs1b (ENSDCDG00000003757) ENSDCDG00000003753 ENSDCDG00000003749 prkcba (ENSDCDG00000002783) socs1b (ENSDCDG00000002716) ENSDCDG00000002703 Euteleosteomorpha ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b #22 Acanthomorphata ANCESTRAL SPECIES 39 ENSGT00940000157752 ENSGT00940000166918 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00950000183249 ENSGT00940000162394 ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00990000204057 ENSGT00950000182960.a.a.a.b #22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000167865 ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a ENSGT00950000183183.b.b Euacanthomorphacea ANCESTRAL SPECIES 3 ENSGT00940000154535.B ENSGT00950000183249 ENSGT00940000162394 ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00990000204057 ENSGT00940000164100.A.c.a ENSGT01100000263483.D.d ENSGT00950000182960.a.b ##22 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000167865 ENSGT00940000182552 ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a Percomorphaceae ANCESTRAL SPECIES 112 ENSGT00940000154960 ENSGT00940000156081.i ENSGT00950000182925.B.a ENSGT00390000012859 ENSGT00950000182850.a.b.b.a ENSGT00500000044989 ENSGT00390000004950 ENSGT00550000074618.b ENSGT00530000065159 ENSGT00940000155553.e.b ENSGT00940000164100.A.c.a ENSGT01100000263483.D.d ENSGT00950000182960.a.b ##22 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 Tiger tail seahorse MODERN SPECIES 262 mief1 (ENSHCOG00000006873) ENSHCOG00000006884 mpst (ENSHCOG00000006897) mpst (ENSHCOG00000006906) ENSHCOG00000006919 ENSHCOG00000006940 ENSHCOG00000000207 chst12a (ENSHCOG00000006968) CARD11 (ENSHCOG00000007033) ap5z1 (ENSHCOG00000007072) mmd2a (ENSHCOG00000007105) wipi2 (ENSHCOG00000007134) smurf1 (ENSHCOG00000007183) ENSHCOG00000007204 FSCN1 (ENSHCOG00000007218) ##21 ENSHCOG00000007233 #22 ENSHCOG00000007252 ##22 TNRC18 (ENSHCOG00000000247) Percomorphaceae_B ANCESTRAL SPECIES 178 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 Ovalentaria ANCESTRAL SPECIES ENSGT00940000178300 ENSGT00950000183249 ENSGT00940000159148.b ENSGT01060000248589.A.d ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00990000204057 ENSGT00530000063725.p.f.d ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00950000182960.a.a.b.f ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a Ovalentaria_B ANCESTRAL SPECIES 100 ENSGT00530000063725.p.f.c.b ENSGT01100000263598 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 Cichlidae ANCESTRAL SPECIES 270 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 Pseudocrenilabrinae ANCESTRAL SPECIES 3 ENSGT00950000183157.a.a.b.d ##21 ENSGT00940000163566.a.a ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f.d ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00530000063725.p.f.c.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00990000204818.a ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 Nile tilapia DUPLICATION Nile tilapia MODERN SPECIES 18 OLFM2 (ENSONIG00000000204) MFAP4 (ENSONIG00000000210) TRIP10 (ENSONIG00000000213) ENSONIG00000000220 VAV1 (ENSONIG00000000226) UBL5 (ENSONIG00000000251) pin1 (ENSONIG00000027273) ENSONIG00000000258 ENSONIG00000036434 ENSONIG00000040827 ENSONIG00000031994 ENSONIG00000033301 ENSONIG00000031015 ACTB (ENSONIG00000003148) ##22 ACTG1 (ENSONIG00000033329) #22 ENSONIG00000036066 #22 ENSONIG00000003153 ENSONIG00000025166 fbxl18 (ENSONIG00000003165) PTCD1 (ENSONIG00000003168) zgc:112980 (ENSONIG00000003172) ENSONIG00000032900 smcr8b (ENSONIG00000003176) mief2 (ENSONIG00000003179) alkbh5 (ENSONIG00000003181) MYO15A (ENSONIG00000003182) ENSONIG00000003190 ENSONIG00000030100 hapstr1b (ENSONIG00000003202) abcg2b (ENSONIG00000003204) ENSONIG00000039403 Nile tilapia MODERN SPECIES 18 rdh8b (ENSONIG00000000184) OLFM2 (ENSONIG00000000204) MFAP4 (ENSONIG00000000210) TRIP10 (ENSONIG00000000213) ENSONIG00000000220 VAV1 (ENSONIG00000000226) UBL5 (ENSONIG00000000251) pin1 (ENSONIG00000027273) ENSONIG00000000258 ENSONIG00000036434 ENSONIG00000040827 ENSONIG00000031994 ENSONIG00000033301 ENSONIG00000031015 ACTB (ENSONIG00000003148) ##22 ACTG1 (ENSONIG00000033329) #22 ENSONIG00000036066 #22 ENSONIG00000003153 ENSONIG00000025166 fbxl18 (ENSONIG00000003165) PTCD1 (ENSONIG00000003168) zgc:112980 (ENSONIG00000003172) ENSONIG00000032900 smcr8b (ENSONIG00000003176) mief2 (ENSONIG00000003179) alkbh5 (ENSONIG00000003181) MYO15A (ENSONIG00000003182) ENSONIG00000003190 ENSONIG00000030100 hapstr1b (ENSONIG00000003202) abcg2b (ENSONIG00000003204) Pseudocrenilabrinae_A DUPLICATION Pseudocrenilabrinae_A ANCESTRAL SPECIES 5 ENSGT00940000163566.a.a ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f.d.h ENSGT00530000063725.p.f.c.a ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b.c #22 ENSGT00530000063725.p.f.c.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b.a ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00990000204818.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 Haplochromini ANCESTRAL SPECIES 3 ENSGT00940000163566.a.a ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f.d.h ENSGT00530000063725.p.f.c.a ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b.c #22 ENSGT00530000063725.p.f.c.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b.a ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00990000204818.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 Haplochromini_A ANCESTRAL SPECIES 2 ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f.d.h ENSGT00530000063725.p.f.c.a ENSGT00530000063725.p.f.d.g.b ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b.c #22 ENSGT00530000063725.p.f.c.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b.a ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00990000204818.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000162658.b P. nyererei MODERN SPECIES 560 ENSPNYG00000019869 ##22 ACTG1 (ENSPNYG00000019880) #22 ENSPNYG00000019906 ENSPNYG00000019919 ENSPNYG00000019942 ##22 fbxl18 (ENSPNYG00000019957) PTCD1 (ENSPNYG00000019993) ENSPNYG00000020019 smcr8b (ENSPNYG00000020109) mief2 (ENSPNYG00000020121) alkbh5 (ENSPNYG00000020156) MYO15A (ENSPNYG00000020186) ENSPNYG00000020316 ENSPNYG00000020364 hapstr1b (ENSPNYG00000020374) abcg2c (ENSPNYG00000020405) ENSPNYG00000020481 Haplochromini_B ANCESTRAL SPECIES 8 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f.d.h ENSGT00530000063725.p.f.c.a ENSGT00530000063725.p.f.d.g.b ENSGT00950000182996.b.b.c.b.b.a.b.c ENSGT00940000154664.h.n.c.e.d.a.b ENSGT00950000182960.a.a.a.b.c #22 ENSGT00530000063725.p.f.c.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b.a ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00990000204818.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000162658.b ENSGT00390000002164.b Zebra mbuna MODERN SPECIES 1109 ENSMZEG00005013366 OLFM2 (ENSMZEG00005013310) MFAP4 (ENSMZEG00005013304) TRIP10 (ENSMZEG00005013280) ENSMZEG00005013242 VAV1 (ENSMZEG00005013190) UBL5 (ENSMZEG00005013172) pin1 (ENSMZEG00005013165) pin1 (ENSMZEG00005013158) ENSMZEG00005013149 ENSMZEG00005013139 ENSMZEG00005013075 ENSMZEG00005013062 ENSMZEG00005013027 KLHL10 (ENSMZEG00005013011) ENSMZEG00005012969 #22 ENSMZEG00005012869 ENSMZEG00005012824 ENSMZEG00005012791 ##22 ACTB (ENSMZEG00005012760) ##22 PTCD1 (ENSMZEG00005012722) zgc:112980 (ENSMZEG00005012703) smcr8b (ENSMZEG00005012693) mief2 (ENSMZEG00005012679) alkbh5 (ENSMZEG00005012673) MYO15A (ENSMZEG00005012550) ENSMZEG00005012502 ENSMZEG00005012457 hapstr1b (ENSMZEG00005012443) abcg2b (ENSMZEG00005012411) ENSMZEG00005012398 Eastern happy MODERN SPECIES 18 ENSACLG00000003350 VAV1 (ENSACLG00000003292) UBL5 (ENSACLG00000003272) pin1 (ENSACLG00000003231) ENSACLG00000003207 ENSACLG00000003192 ENSACLG00000003185 ENSACLG00000003171 ENSACLG00000003165 ENSACLG00000003149 ENSACLG00000003106 ENSACLG00000003066 ENSACLG00000003013 KLHL10 (ENSACLG00000002998) ENSACLG00000002975 ##22 ACTG1 (ENSACLG00000002912) #22 ENSACLG00000002873 ENSACLG00000002863 ENSACLG00000002849 ##22 fbxl18 (ENSACLG00000002840) PTCD1 (ENSACLG00000002824) zgc:112980 (ENSACLG00000002791) smcr8b (ENSACLG00000002784) mief2 (ENSACLG00000002732) alkbh5 (ENSACLG00000002713) ENSACLG00000002632 ENSACLG00000002598 ENSACLG00000002548 hapstr1b (ENSACLG00000002543) abcg2b (ENSACLG00000002540) ENSACLG00000002538 Pseudocrenilabrinae_A DUPLICATION Pseudocrenilabrinae_A DUPLICATION Pseudocrenilabrinae_A ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.d.a.a #22 Lyretail cichlid MODERN SPECIES 332 ENSNBRG00000010403 ENSNBRG00000010368 ##22 ENSNBRG00000010286 #22 ENSNBRG00000010238 ENSNBRG00000010223 ENSNBRG00000010199 ##22 fbxl18 (ENSNBRG00000010149) PTCD1 (ENSNBRG00000010079) ENSNBRG00000010048 ENSNBRG00000009990 smcr8b (ENSNBRG00000009980) mief2 (ENSNBRG00000009954) alkbh5 (ENSNBRG00000009936) ENSNBRG00000009919 ENSNBRG00000009910 ENSNBRG00000009863 hapstr1b (ENSNBRG00000009844) abcg2c (ENSNBRG00000009655) Haplochromini ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.d.a.a #22 Burton s mouthbrooder MODERN SPECIES 1647 ENSHBUG00000013685 #22 Pseudocrenilabrinae_A ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.d.a.b #22 Haplochromini ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.d.a.b #22 Burton s mouthbrooder MODERN SPECIES 1392 ENSHBUG00000000402 #22 ENSHBUG00000013503 Pseudocrenilabrinae_A ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b.d.b #22 Lyretail cichlid MODERN SPECIES 196 ENSNBRG00000001143 #22 Atherinomorphae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b #22 Cyprinodontiformes ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b #22 Cyprinodontoidei ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b #22 NAME_4 ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b #22 Mummichog MODERN SPECIES 1537 ENSFHEG00000011177 #22 Oryzias ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b #22 Oryzias_b ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b #22 Javanese ricefish MODERN SPECIES ENSOJAG00000011496 ttyh3b (ENSOJAG00000011786) ENSOJAG00000011852 ENSOJAG00000011861 ##21 PLK1 (ENSOJAG00000011874) rdh8b (ENSOJAG00000011956) OLFM2 (ENSOJAG00000014220) MFAP4 (ENSOJAG00000014225) TRIP10 (ENSOJAG00000014238) ENSOJAG00000014365 VAV1 (ENSOJAG00000014407) UBL5 (ENSOJAG00000014456) pin1 (ENSOJAG00000014472) ENSOJAG00000014496 ENSOJAG00000014504 ACTG1 (ENSOJAG00000014512) #22 fbxl18 (ENSOJAG00000014573) PTCD1 (ENSOJAG00000014663) ENSOJAG00000014711 ENSOJAG00000014734 mief2 (ENSOJAG00000014808) alkbh5 (ENSOJAG00000014815) ENSOJAG00000014819 ENSOJAG00000014874 hapstr1b (ENSOJAG00000015004) abcg2c (ENSOJAG00000015025) ENSOJAG00000015322 ENSOJAG00000015330 arpc1a (ENSOJAG00000015354) arpc1b (ENSOJAG00000015421) MMD2 (ENSOJAG00000015528) Protacanthopterygii ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b #22 Salmoninae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.b #22 Huchen DUPLICATION Huchen DUPLICATION Huchen MODERN SPECIES 10760 ENSHHUG00000017365 #22 Huchen MODERN SPECIES 12679 ENSHHUG00000017419 #22 Huchen MODERN SPECIES 9365 ENSHHUG00000038731 #22 Reedfish DUPLICATION Reedfish MODERN SPECIES 13 ENSECRG00000003199 HPGDS (ENSECRG00000003206) atoh1a (ENSECRG00000003216) grid2 (ENSECRG00000003242) ENSECRG00000003274 cldne (ENSECRG00000003282) ENSECRG00000003291 ENSECRG00000003301 ENSECRG00000003313 SNCA (ENSECRG00000003319) ENSECRG00000003329 smim20 (ENSECRG00000003341) SEL1L3 (ENSECRG00000003357) ENSECRG00000003423 ENSECRG00000009537 ENSECRG00000009556 #22 ENSECRG00000009563 prdm5 (ENSECRG00000009578) ndnf (ENSECRG00000009593) QRFPR (ENSECRG00000009606) anxa5b (ENSECRG00000009620) exosc9 (ENSECRG00000009639) ccna2 (ENSECRG00000009664) ENSECRG00000009678 CLCN3 (ENSECRG00000009709) hpf1 (ENSECRG00000009760) ENSECRG00000009775 sh3rf1 (ENSECRG00000009805) cbr4 (ENSECRG00000009888) PALLD (ENSECRG00000009993) ENSECRG00000010621 Reedfish MODERN SPECIES 6 MARK1 (ENSECRG00000016901) mrpl57 (ENSECRG00000016852) ENSECRG00000016222 TRAF5 (ENSECRG00000016179) rcor3 (ENSECRG00000016101) KCNH1 (ENSECRG00000015774) hhat (ENSECRG00000015287) ENSECRG00000015128 ENSECRG00000015057 ENSECRG00000014987 slc22a7a (ENSECRG00000014814) ENSECRG00000014683 ##22 ENSECRG00000014668 atl3 (ENSECRG00000014627) ENSECRG00000014585 ENSECRG00000017550 #22 ENSECRG00000017534 ENSECRG00000017522 ENSECRG00000017502 ENSECRG00000017487 ENSECRG00000017469 cript (ENSECRG00000017433) pigf (ENSECRG00000017397) rhoq (ENSECRG00000017378) epas1b (ENSECRG00000017335) PRKCE (ENSECRG00000017293) SRBD1 (ENSECRG00000017244) six2a (ENSECRG00000017213) six3a (ENSECRG00000017189) ENSECRG00000017176 prepl (ENSECRG00000017112) Reedfish MODERN SPECIES 5 ENSECRG00000017704 ttyh2l (ENSECRG00000017658) RPL38 (ENSECRG00000017630) SDK2 (ENSECRG00000017574) CDC42EP4 (ENSECRG00000017535) ENSECRG00000017466 ENSECRG00000017416 cyth1b (ENSECRG00000016701) PGS1 (ENSECRG00000016505) socs3b (ENSECRG00000016487) tha1 (ENSECRG00000016457) TMEM235 (ENSECRG00000016413) birc5a (ENSECRG00000016393) FAAP100 (ENSECRG00000016359) #20 fscn2b (ENSECRG00000016263) #21 ENSECRG00000016211 #22 SLC38A10 (ENSECRG00000016093) #25 ndufaf8 (ENSECRG00000016031) #26 TEPSIN (ENSECRG00000015992) #27 USP36 (ENSECRG00000015940) ENSECRG00000015918 timp2b (ENSECRG00000015896) ENSECRG00000015830 FDXR (ENSECRG00000015691) ENSECRG00000015613 atp5pd (ENSECRG00000015582) ENSECRG00000015567 ENSECRG00000015551 SLC16A5 (ENSECRG00000015524) NT5C (ENSECRG00000015494) armc7 (ENSECRG00000015479) Euteleostomi ANCESTRAL SPECIES 63 ENSGT01050000244891.B ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00950000182960.a.a.a.b #22 ENSGT00950000182960.a.a.b ##22 ENSGT00390000015109 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Sarcopterygii ANCESTRAL SPECIES 76 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000160705.C.b ENSGT01050000244891.B ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00950000182960.a.a.a.b #22 ENSGT00390000015109 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00550000074913 Tetrapoda DUPLICATION Tetrapoda DUPLICATION Tetrapoda ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.a.a ##22 Anura ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.a.a ##22 Leishan spiny toad MODERN SPECIES 7 ENSLLEG00000010738 ENSLLEG00000010758 ENSLLEG00000010840 ENSLLEG00000010979 ENSLLEG00000011003 ENSLLEG00000011073 ENSLLEG00000011603 ENSLLEG00000011628 ENSLLEG00000011690 MSH2 (ENSLLEG00000011713) ENSLLEG00000011874 KCNK12 (ENSLLEG00000011897) CAPN14 (ENSLLEG00000011974) EHD3 (ENSLLEG00000012406) ENSLLEG00000012536 ENSLLEG00000012568 ##22 XDH (ENSLLEG00000012626) CIAO2B (ENSLLEG00000013103) CDC42BPA (ENSLLEG00000013288) COQ8A (ENSLLEG00000015209) ITPKB (ENSLLEG00000015339) STUM (ENSLLEG00000015570) PARP1 (ENSLLEG00000015662) ENSLLEG00000015804 LIN9 (ENSLLEG00000015844) ACBD3 (ENSLLEG00000016048) ENSLLEG00000016183 ENSLLEG00000016221 ENSLLEG00000016356 SDE2 (ENSLLEG00000016419) ENSLLEG00000016508 Amniota ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.a.a ##22 Sauria ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.a.a ##22 Archelosauria ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.a.a ##22 Archosauria ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.a.a ##22 Aves ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.a.a ##22 Neognathae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.a.a ##22 Galloanserae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.a.a ##22 Phasianidae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.a.a ##22 Japanese quail MODERN SPECIES 5 MAP2K3 (ENSCJPG00005001368) ENSCJPG00005001360 ATP5MF (ENSCJPG00005001357) CPSF4 (ENSCJPG00005001353) PTCD1 (ENSCJPG00005001347) BUD31 (ENSCJPG00005001343) PDAP1 (ENSCJPG00005001340) ARPC1B (ENSCJPG00005001338) ARPC1A (ENSCJPG00005001335) KPNA7 (ENSCJPG00005001331) ENSCJPG00005001328 SMURF1 (ENSCJPG00005001326) ENSCJPG00005001323 RNF216 (ENSCJPG00005000414) FSCN1 (ENSCJPG00005000395) ##21 ACTB (ENSCJPG00005000336) ##22 FBXL18 (ENSCJPG00005000327) TNRC18 (ENSCJPG00005000297) SLC29A4 (ENSCJPG00005000281) WIPI2 (ENSCJPG00005000267) MMD2 (ENSCJPG00005000255) RADIL (ENSCJPG00005000245) AP5Z1 (ENSCJPG00005000241) FOXK1 (ENSCJPG00005000229) ENSCJPG00005000081 ENSCJPG00005000052 SDK1 (ENSCJPG00005014282) CARD11 (ENSCJPG00005014281) GNA12 (ENSCJPG00005014279) AMZ1 (ENSCJPG00005014211) BRAT1 (ENSCJPG00005014210) Mammalia ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.a.a ##22 Theria ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.a.a ##22 Eutheria ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.a.a ##22 Boreoeutheria ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.a.a ##22 Laurasiatheria ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.a.a ##22 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.a.a ##22 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.a.a ##22 Carnivora ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.a.a ##22 Caniformia ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.a.a ##22 Caniformia_b ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.a.a ##22 Ursidae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.a.a ##22 Giant Panda MODERN SPECIES 2077 ENSAMEG00000027651 ##22 Tetrapoda ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.a.b ##22 Anura ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.a.b ##22 Leishan spiny toad DUPLICATION Leishan spiny toad DUPLICATION Leishan spiny toad MODERN SPECIES 11 ENSLLEG00000015754 ENSLLEG00000015865 FMO3 (ENSLLEG00000015978) ENSLLEG00000016120 ENSLLEG00000016231 ENSLLEG00000016553 ENSLLEG00000016645 ENSLLEG00000016826 UAP1 (ENSLLEG00000017087) ENSLLEG00000017449 ENSLLEG00000017639 RGS4 (ENSLLEG00000017672) RGS5 (ENSLLEG00000017729) NUF2 (ENSLLEG00000017847) PBX1 (ENSLLEG00000017987) ENSLLEG00000018211 ##22 LMX1A (ENSLLEG00000018232) ENSLLEG00000018418 AGL (ENSLLEG00000018588) ENSLLEG00000021945 ENSLLEG00000022008 ENSLLEG00000022049 ENSLLEG00000022322 ENSLLEG00000022452 ENSLLEG00000022518 ENSLLEG00000022535 ENSLLEG00000022593 DAG1 (ENSLLEG00000022659) ENSLLEG00000022696 F13B (ENSLLEG00000022763) HENMT1 (ENSLLEG00000022961) Leishan spiny toad MODERN SPECIES 1 ENSLLEG00000015567 ENSLLEG00000015888 ENSLLEG00000015974 ENSLLEG00000016045 ENSLLEG00000016065 ENSLLEG00000016178 ENSLLEG00000016261 ENSLLEG00000016341 BBS2 (ENSLLEG00000016420) OGFOD1 (ENSLLEG00000016920) NUDT21 (ENSLLEG00000017159) AMFR (ENSLLEG00000017376) GNAO1 (ENSLLEG00000017781) ENSLLEG00000018028 ENSLLEG00000018054 ENSLLEG00000018075 ##22 CBFB (ENSLLEG00000018137) ENSLLEG00000018241 B3GNT9 (ENSLLEG00000018489) TRADD (ENSLLEG00000018513) ENSLLEG00000018557 ENSLLEG00000018625 ENSLLEG00000018669 HSF4 (ENSLLEG00000018756) ENSLLEG00000019111 ENSLLEG00000019205 NUP93 (ENSLLEG00000019228) SLC12A3 (ENSLLEG00000019410) HERPUD1 (ENSLLEG00000019676) CETP (ENSLLEG00000019915) NLRC5 (ENSLLEG00000020097) Leishan spiny toad MODERN SPECIES 10 ZC3H15 (ENSLLEG00000028373) ENSLLEG00000028588 SMURF1 (ENSLLEG00000028621) WIPI2 (ENSLLEG00000016159) SLC29A4 (ENSLLEG00000016445) ENSLLEG00000016640 ENSLLEG00000016662 FOXK1 (ENSLLEG00000016690) CARD11 (ENSLLEG00000016801) ITGAV (ENSLLEG00000017273) DNASE1L3 (ENSLLEG00000017824) ENSLLEG00000017910 ENSLLEG00000017934 ENSLLEG00000018302 ENSLLEG00000018003 ENSLLEG00000018629 ##22 ENSLLEG00000018904 FBXL18 (ENSLLEG00000018952) FSCN1 (ENSLLEG00000019010) ##21 RNF216 (ENSLLEG00000019172) ENSLLEG00000019386 CALCRL (ENSLLEG00000019529) ENSLLEG00000020101 GTF3C3 (ENSLLEG00000020452) ENSLLEG00000020752 ETV5 (ENSLLEG00000020770) PFKL (ENSLLEG00000021027) DNAJB11 (ENSLLEG00000021973) ENSLLEG00000022365 TBCCD1 (ENSLLEG00000022414) VPS16 (ENSLLEG00000022652) Frog MODERN SPECIES 9 mstn.2 (ENSXETG00000043668) mstn.1 (ENSXETG00000048016) ptcd1 (ENSXETG00000009891) cpsf4 (ENSXETG00000009892) kcnj12 (ENSXETG00000046715) atp5mf (ENSXETG00000043524) kpna7 (ENSXETG00000007497) ENSXETG00000034868 ENSXETG00000041441 smurf1 (ENSXETG00000007498) rnf216 (ENSXETG00000044685) fscn1 (ENSXETG00000007501) ##21 fbxl18 (ENSXETG00000007502) ENSXETG00000047797 tnrc18 (ENSXETG00000007504) actb (ENSXETG00000025116) ##22 ENSXETG00000046251 hspe1 (ENSXETG00000007510) hspd1 (ENSXETG00000007509) tra2b (ENSXETG00000007511) mob4 (ENSXETG00000025118) ENSXETG00000045791 calcrl (ENSXETG00000013895) itgav (ENSXETG00000013317) zc3h15 (ENSXETG00000013336) ENSXETG00000046487 sf3b1 (ENSXETG00000013339) ENSXETG00000042545 ENSXETG00000047626 tbccd1 (ENSXETG00000013351) gls (ENSXETG00000024709) Tetrapoda ANCESTRAL SPECIES 75 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000160705.C.b ENSGT01050000244891.B ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00950000182960.a.a.a.b #22 ENSGT00390000015109 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000163679 Amniota ANCESTRAL SPECIES 11 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000160705.C.b ENSGT01050000244891.B ENSGT00940000158690 ENSGT00940000156819.a.b ENSGT00940000157017.a.b.a ENSGT01090000260051.b.a.b ENSGT00390000013965 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b Sauria ANCESTRAL SPECIES 12 ENSGT00940000160875 ENSGT01030000234586.A.a.b ENSGT00510000046986 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000160705.C.b ENSGT01050000244891.B ENSGT00940000158690 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.b ENSGT00950000182958.a.b.b.a ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b Lepidosauria ANCESTRAL SPECIES 22 ENSGT00940000160875 ENSGT01030000234586.A.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000160705.C.b ENSGT01050000244891.B ENSGT00940000158690 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.b ENSGT00950000182958.a.b.b.a ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b Episquamata ANCESTRAL SPECIES 8 ENSGT00940000160875 ENSGT01030000234586.A.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000160705.C.b ENSGT01050000244891.B ENSGT00940000158690 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.b ENSGT00950000182958.a.b.b.a ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573.a ENSGT00940000157636 ENSGT00530000063996.b Toxicofera ANCESTRAL SPECIES 14 ENSGT00940000160875 ENSGT01030000234586.A.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000160705.C.b ENSGT01050000244891.B ENSGT00940000158690 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.b ENSGT00950000182958.a.b.b.a ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573.a ENSGT00940000157636 ENSGT00530000063996.b Elapidae ANCESTRAL SPECIES 1 ENSGT00940000160875.a ENSGT01030000234586.A.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000160705.C.b ENSGT01050000244891.B ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.bb ##21 ENSGT00950000183157.a.a.b.cb ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.b ENSGT00950000182958.a.b.b.a ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573.a ENSGT00940000157636 ENSGT00530000063996.b Indian cobra DUPLICATION Indian cobra MODERN SPECIES 15 NATD1 (ENSNNAG00000016053) MAP2K3 (ENSNNAG00000016061) ENSNNAG00000016085 CPSF4 (ENSNNAG00000016093) PTCD1 (ENSNNAG00000016099) BUD31 (ENSNNAG00000016111) PDAP1 (ENSNNAG00000016121) ARPC1B (ENSNNAG00000016131) ARPC1A (ENSNNAG00000016149) ENSNNAG00000016182 KPNA7 (ENSNNAG00000016223) SMURF1 (ENSNNAG00000016275) RNF216 (ENSNNAG00000016285) ENSNNAG00000016312 ##21 ENSNNAG00000016321 ##21 ACTB (ENSNNAG00000007940) ##22 FBXL18 (ENSNNAG00000007962) TNRC18 (ENSNNAG00000007985) SLC29A4 (ENSNNAG00000008031) WIPI2 (ENSNNAG00000008185) MMD2 (ENSNNAG00000008226) RADIL (ENSNNAG00000008297) AP5Z1 (ENSNNAG00000008991) FOXK1 (ENSNNAG00000009066) ENSNNAG00000009103 ENSNNAG00000009204 ENSNNAG00000010331 SDK1 (ENSNNAG00000010369) ENSNNAG00000010658 ENSNNAG00000010684 GNA12 (ENSNNAG00000010706) Indian cobra MODERN SPECIES 2 ENSNNAG00000006581 ENSNNAG00000006588 ENSNNAG00000007542 KCNT2 (ENSNNAG00000007787) CDC73 (ENSNNAG00000010774) B3GALT2 (ENSNNAG00000010889) GLRX2 (ENSNNAG00000010901) RO60 (ENSNNAG00000010921) UCHL5 (ENSNNAG00000010968) RGS2 (ENSNNAG00000011045) RGS13 (ENSNNAG00000011068) RGS1 (ENSNNAG00000011142) RGS21 (ENSNNAG00000011168) RGS18 (ENSNNAG00000011185) BRINP3 (ENSNNAG00000011202) ENSNNAG00000011275 ##22 PLA2G4A (ENSNNAG00000011291) PTGS2 (ENSNNAG00000011472) PDC (ENSNNAG00000011528) ODR4 (ENSNNAG00000011565) TPR (ENSNNAG00000011690) ENSNNAG00000013631 IVNS1ABP (ENSNNAG00000014370) SWT1 (ENSNNAG00000014403) TRMT1L (ENSNNAG00000014421) RNF2 (ENSNNAG00000014464) NIBAN1 (ENSNNAG00000014490) EDEM3 (ENSNNAG00000014545) C1orf21 (ENSNNAG00000014636) ENSNNAG00000014665 COLGALT2 (ENSNNAG00000014679) Elapidae_a ANCESTRAL SPECIES 3 ENSGT00940000160875.a ENSGT01030000234586.A.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000160705.C.b ENSGT01050000244891.B ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.bb ##21 ENSGT00950000183157.a.a.b.cb ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.b ENSGT00950000182958.a.b.b.a ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573.a ENSGT00940000157636 ENSGT00530000063996.b Blue-lipped sea krait MODERN SPECIES 6930 ACTB (ENSLLTG00000011302) ##22 FBXL18 (ENSLLTG00000011543) Acanthophiinae ANCESTRAL SPECIES 2 ENSGT00390000014840.a ENSGT00940000160875.a ENSGT01030000234586.A.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000160705.C.b ENSGT01050000244891.B ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.bb ##21 ENSGT00950000183157.a.a.b.cb ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.b ENSGT00950000182958.a.b.b.a ENSGT00950000182958.a.b.a.f ENSGT00940000157747 ENSGT00940000158573.a ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Mainland tiger snake MODERN SPECIES 1327 ACTB (ENSNSUG00000011460) ##22 FBXL18 (ENSNSUG00000011440) Eastern brown snake MODERN SPECIES 24 NATD1 (ENSPTXG00000006626) ENSPTXG00000006628 ENSPTXG00000006631 ENSPTXG00000006632 CPSF4 (ENSPTXG00000006634) PTCD1 (ENSPTXG00000006635) BUD31 (ENSPTXG00000006636) ARPC1B (ENSPTXG00000006637) ARPC1A (ENSPTXG00000006639) ENSPTXG00000006641 KPNA7 (ENSPTXG00000006643) SMURF1 (ENSPTXG00000006645) ENSPTXG00000006646 ENSPTXG00000006647 ##21 ENSPTXG00000006648 ##21 ACTB (ENSPTXG00000006649) ##22 FBXL18 (ENSPTXG00000006650) ENSPTXG00000006651 ENSPTXG00000006652 SLC29A4 (ENSPTXG00000006654) RADIL (ENSPTXG00000006655) AP5Z1 (ENSPTXG00000006766) FOXK1 (ENSPTXG00000006769) ENSPTXG00000006776 ENSPTXG00000006809 ENSPTXG00000007271 SDK1 (ENSPTXG00000007273) CARD11 (ENSPTXG00000007391) GNA12 (ENSPTXG00000007409) AMZ1 (ENSPTXG00000007410) TTYH3 (ENSPTXG00000007411) Lizard DUPLICATION Lizard MODERN SPECIES 1323 ENSACAG00000014477 ENSACAG00000014636 ENSACAG00000038480 ENSACAG00000014872 CLK3 (ENSACAG00000015089) ENSACAG00000023116 ENSACAG00000015146 ENSACAG00000025900 ENSACAG00000015163 ##22 UBL7 (ENSACAG00000015166) Lizard DUPLICATION Lizard MODERN SPECIES 1625 ENSACAG00000045177 ##22 ENSACAG00000043118 ##22 ENSACAG00000001175 Lizard MODERN SPECIES 1625 ENSACAG00000045177 ##22 ENSACAG00000043118 ##22 ENSACAG00000001175 Lizard MODERN SPECIES 930 RAPGEF4 (ENSACAG00000006250) MAP3K20 (ENSACAG00000006292) CDCA7 (ENSACAG00000006323) ENSACAG00000006349 ENSACAG00000039593 ##22 ENSACAG00000037087 ENSACAG00000012210 SP3 (ENSACAG00000017061) ENSACAG00000036865 OLA1 (ENSACAG00000017018) ENSACAG00000013943 ENSACAG00000034735 Laterata ANCESTRAL SPECIES 22 ENSGT00940000160875 ENSGT01030000234586.A.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000160705.C.b ENSGT01050000244891.B ENSGT00940000158690 ENSGT00940000156819.a.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.b ENSGT00950000182958.a.b.b.a ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573.a ENSGT00940000157636 ENSGT00530000063996.b Argentine black and white tegu MODERN SPECIES 103 MAP2K3 (ENSSMRG00000020114) ENSSMRG00000020115 ENSSMRG00000020116 CPSF4 (ENSSMRG00000020117) PTCD1 (ENSSMRG00000020118) BUD31 (ENSSMRG00000020120) PDAP1 (ENSSMRG00000020122) ARPC1B (ENSSMRG00000020124) ARPC1A (ENSSMRG00000020127) ENSSMRG00000020128 KPNA7 (ENSSMRG00000020136) SMURF1 (ENSSMRG00000020244) ENSSMRG00000020246 RNF216 (ENSSMRG00000020248) FSCN1 (ENSSMRG00000020250) ##21 ACTB (ENSSMRG00000020253) ##22 FBXL18 (ENSSMRG00000020254) TNRC18 (ENSSMRG00000020258) SLC29A4 (ENSSMRG00000020264) WIPI2 (ENSSMRG00000020266) MMD2 (ENSSMRG00000020268) RADIL (ENSSMRG00000020270) AP5Z1 (ENSSMRG00000020271) FOXK1 (ENSSMRG00000020272) ENSSMRG00000020274 ENSSMRG00000020277 ENSSMRG00000020278 SDK1 (ENSSMRG00000020282) CARD11 (ENSSMRG00000020289) GNA12 (ENSSMRG00000020290) AMZ1 (ENSSMRG00000020292) Common wall lizard MODERN SPECIES 5 DNAJA3 (ENSPMRG00000015091) NMRAL1 (ENSPMRG00000015078) HMOX2 (ENSPMRG00000015069) CDIP1 (ENSPMRG00000015063) ENSPMRG00000015058 MGRN1 (ENSPMRG00000015031) ENSPMRG00000015017 NUDT16L1 (ENSPMRG00000015005) NAA60 (ENSPMRG00000014997) INTS15 (ENSPMRG00000014988) DNASE1 (ENSPMRG00000014979) SMURF1 (ENSPMRG00000014955) ENSPMRG00000014944 RNF216 (ENSPMRG00000014937) FSCN1 (ENSPMRG00000014927) ##21 ACTB (ENSPMRG00000014896) ##22 FBXL18 (ENSPMRG00000014889) TNRC18 (ENSPMRG00000014823) SLC29A4 (ENSPMRG00000014802) WIPI2 (ENSPMRG00000014768) MMD2 (ENSPMRG00000014749) ENSPMRG00000014738 ENSPMRG00000014725 AP5Z1 (ENSPMRG00000014693) ENSPMRG00000014683 ENSPMRG00000014680 ENSPMRG00000014671 ENSPMRG00000019804 ENSPMRG00000019733 ENSPMRG00000019694 ENSPMRG00000019677 tuatara DUPLICATION tuatara MODERN SPECIES 1883 CYP11A1 (ENSSPUG00000007955) SEMA7A (ENSSPUG00000008047) UBL7 (ENSSPUG00000008178) ENSSPUG00000008186 ##22 ACTBL2 (ENSSPUG00000008188) ARID3B (ENSSPUG00000008193) ENSSPUG00000008203 CLK3 (ENSSPUG00000008218) EDC3 (ENSSPUG00000008232) ENSSPUG00000008258 CYP1A18 (ENSSPUG00000008398) CYP1A19 (ENSSPUG00000008533) tuatara MODERN SPECIES 1383 ENSSPUG00000003583 ENSSPUG00000003555 CPSF4 (ENSSPUG00000003549) PTCD1 (ENSSPUG00000003540) BUD31 (ENSSPUG00000003523) PDAP1 (ENSSPUG00000003518) ARPC1B (ENSSPUG00000003501) ARPC1A (ENSSPUG00000003489) ENSSPUG00000003424 KPNA7 (ENSSPUG00000003169) SMURF1 (ENSSPUG00000002982) ENSSPUG00000002956 ENSSPUG00000002931 ENSSPUG00000002901 FSCN1 (ENSSPUG00000002887) ##21 ACTB (ENSSPUG00000002859) ##22 FBXL18 (ENSSPUG00000002840) TNRC18 (ENSSPUG00000002773) SLC29A4 (ENSSPUG00000002730) WIPI2 (ENSSPUG00000002705) MMD2 (ENSSPUG00000002669) RADIL (ENSSPUG00000002651) AP5Z1 (ENSSPUG00000002637) FOXK1 (ENSSPUG00000002586) CYP3A237 (ENSSPUG00000002560) CYP3A236 (ENSSPUG00000002482) CYP3A234 (ENSSPUG00000002466) SDK1 (ENSSPUG00000002401) ENSSPUG00000002383 CARD11 (ENSSPUG00000002342) GNA12 (ENSSPUG00000002321) Archelosauria ANCESTRAL SPECIES 12 ENSGT00940000160875 ENSGT01030000234586.A.a.b ENSGT00510000046986 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000160705.C.b ENSGT01050000244891.B ENSGT00940000158690 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.b ENSGT00950000182958.a.b.b.a ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b Cryptodira ANCESTRAL SPECIES 12 ENSGT00940000160875 ENSGT01030000234586.A.a.b ENSGT00510000046986 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000160705.C.b ENSGT01050000244891.B ENSGT00940000158690 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.b ENSGT00950000182958.a.b.b.a ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b Testudinoidea ANCESTRAL SPECIES 6 ENSGT01030000234586.A.a.b ENSGT00940000165557 ENSGT00510000046986 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000160705.C.b ENSGT01050000244891.B ENSGT00940000158690 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.b ENSGT00950000182958.a.b.b.a ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b Emydidae ANCESTRAL SPECIES 12 ENSGT00940000160875 ENSGT01030000234586.A.a.b ENSGT00510000046986 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000160705.C.b ENSGT01050000244891.B ENSGT00940000158690 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.b ENSGT00950000182958.a.b.b.a ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b Three-toed box turtle MODERN SPECIES 37 MAP2K3 (ENSTMTG00000018672) ENSTMTG00000018727 ATP5MF (ENSTMTG00000018744) CPSF4 (ENSTMTG00000013163) PTCD1 (ENSTMTG00000013170) BUD31 (ENSTMTG00000013181) PDAP1 (ENSTMTG00000013184) ARPC1B (ENSTMTG00000013193) ARPC1A (ENSTMTG00000013201) ENSTMTG00000013213 KPNA7 (ENSTMTG00000013331) SMURF1 (ENSTMTG00000013503) ENSTMTG00000013912 RNF216 (ENSTMTG00000013919) FSCN1 (ENSTMTG00000013932) ##21 ACTB (ENSTMTG00000013939) ##22 FBXL18 (ENSTMTG00000013950) TNRC18 (ENSTMTG00000013974) SLC29A4 (ENSTMTG00000014089) WIPI2 (ENSTMTG00000014221) MMD2 (ENSTMTG00000014249) RADIL (ENSTMTG00000014332) AP5Z1 (ENSTMTG00000014674) FOXK1 (ENSTMTG00000014689) ENSTMTG00000014716 ENSTMTG00000014788 SDK1 (ENSTMTG00000014861) CARD11 (ENSTMTG00000015497) GNA12 (ENSTMTG00000015674) AMZ1 (ENSTMTG00000015691) BRAT1 (ENSTMTG00000015782) painted turtle DUPLICATION painted turtle MODERN SPECIES 2421 NATD1 (ENSCPBG00000020883) MAP2K3 (ENSCPBG00000020879) ATP5MF (ENSCPBG00000020871) CPSF4 (ENSCPBG00000020869) PTCD1 (ENSCPBG00000020866) BUD31 (ENSCPBG00000020864) PDAP1 (ENSCPBG00000020862) ARPC1B (ENSCPBG00000020858) ARPC1A (ENSCPBG00000020854) ENSCPBG00000020844 KPNA7 (ENSCPBG00000020833) SMURF1 (ENSCPBG00000020821) ENSCPBG00000020819 RNF216 (ENSCPBG00000020812) FSCN1 (ENSCPBG00000020810) ##21 ACTB (ENSCPBG00000020809) ##22 FBXL18 (ENSCPBG00000020806) TNRC18 (ENSCPBG00000020786) SLC29A4 (ENSCPBG00000020775) WIPI2 (ENSCPBG00000020771) MMD2 (ENSCPBG00000020769) RADIL (ENSCPBG00000020765) AP5Z1 (ENSCPBG00000020762) FOXK1 (ENSCPBG00000020759) ENSCPBG00000020756 ENSCPBG00000020752 ENSCPBG00000020745 SDK1 (ENSCPBG00000020738) CARD11 (ENSCPBG00000020734) GNA12 (ENSCPBG00000020731) AMZ1 (ENSCPBG00000020728) painted turtle MODERN SPECIES 901 ENSCPBG00000024252 ENSCPBG00000024250 CPLX3 (ENSCPBG00000024248) CSK (ENSCPBG00000024245) ENSCPBG00000024243 ENSCPBG00000024242 ENSCPBG00000024240 EDC3 (ENSCPBG00000024239) CLK3 (ENSCPBG00000024233) ENSCPBG00000024223 ARID3B (ENSCPBG00000024217) ENSCPBG00000024214 ##22 ENSCPBG00000024213 ##22 UBL7 (ENSCPBG00000024212) SEMA7A (ENSCPBG00000024206) ENSCPBG00000024203 SHF (ENSCPBG00000024201) ENSCPBG00000024200 painted turtle MODERN SPECIES 901 ENSCPBG00000024200 SHF (ENSCPBG00000024201) ENSCPBG00000024203 SEMA7A (ENSCPBG00000024206) UBL7 (ENSCPBG00000024212) ENSCPBG00000024213 ##22 ENSCPBG00000024214 ##22 ARID3B (ENSCPBG00000024217) ENSCPBG00000024223 CLK3 (ENSCPBG00000024233) EDC3 (ENSCPBG00000024239) ENSCPBG00000024240 ENSCPBG00000024242 ENSCPBG00000024243 CSK (ENSCPBG00000024245) CPLX3 (ENSCPBG00000024248) ENSCPBG00000024250 ENSCPBG00000024252 Testudinidae ANCESTRAL SPECIES 13 ENSGT00940000160875 ENSGT01030000234586.A.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000160705.C.b ENSGT01050000244891.B ENSGT00940000158690 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.b ENSGT00950000182958.a.b.b.a ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b Goode s thornscrub tortoise DUPLICATION Goode s thornscrub tortoise MODERN SPECIES 1 SORD (ENSGEVG00005015601) DUOX2 (ENSGEVG00005015380) ENSGEVG00005015304 ENSGEVG00005015254 ENSGEVG00005015220 SEC11A (ENSGEVG00005015197) ZNF592 (ENSGEVG00005015174) ENSGEVG00005015136 ENSGEVG00005015083 ENSGEVG00005014788 ENSGEVG00005014728 SHF (ENSGEVG00005014677) ENSGEVG00005014651 SEMA7A (ENSGEVG00005014606) UBL7 (ENSGEVG00005014570) ENSGEVG00005014555 ##22 ENSGEVG00005014533 ##22 ARID3B (ENSGEVG00005014514) CLK3 (ENSGEVG00005014252) EDC3 (ENSGEVG00005014199) ENSGEVG00005014095 ENSGEVG00005013951 ENSGEVG00005013877 ENSGEVG00005013837 ENSGEVG00005013802 CSK (ENSGEVG00005013768) CPLX3 (ENSGEVG00005013724) ULK3 (ENSGEVG00005013676) SCAMP2 (ENSGEVG00005013646) MPI (ENSGEVG00005013619) FAM219B (ENSGEVG00005013593) Goode s thornscrub tortoise MODERN SPECIES 1 ENSGEVG00005013552 FAM219B (ENSGEVG00005013593) MPI (ENSGEVG00005013619) SCAMP2 (ENSGEVG00005013646) ULK3 (ENSGEVG00005013676) CPLX3 (ENSGEVG00005013724) CSK (ENSGEVG00005013768) ENSGEVG00005013802 ENSGEVG00005013837 ENSGEVG00005013877 ENSGEVG00005013951 ENSGEVG00005014095 EDC3 (ENSGEVG00005014199) CLK3 (ENSGEVG00005014252) ARID3B (ENSGEVG00005014514) ENSGEVG00005014533 ##22 ENSGEVG00005014555 ##22 UBL7 (ENSGEVG00005014570) SEMA7A (ENSGEVG00005014606) ENSGEVG00005014651 SHF (ENSGEVG00005014677) ENSGEVG00005014728 ENSGEVG00005014788 ENSGEVG00005015083 ENSGEVG00005015136 ZNF592 (ENSGEVG00005015174) SEC11A (ENSGEVG00005015197) ENSGEVG00005015220 ENSGEVG00005015254 ENSGEVG00005015304 DUOX2 (ENSGEVG00005015380) Goode s thornscrub tortoise MODERN SPECIES 1 MAP2K3 (ENSGEVG00005008697) ENSGEVG00005008686 ENSGEVG00005008673 CPSF4 (ENSGEVG00005008657) PTCD1 (ENSGEVG00005008641) BUD31 (ENSGEVG00005008621) PDAP1 (ENSGEVG00005008608) ARPC1B (ENSGEVG00005008587) ARPC1A (ENSGEVG00005008567) ENSGEVG00005008415 KPNA7 (ENSGEVG00005008225) SMURF1 (ENSGEVG00005008131) ENSGEVG00005008108 RNF216 (ENSGEVG00005008033) FSCN1 (ENSGEVG00005007997) ##21 ACTB (ENSGEVG00005007981) ##22 FBXL18 (ENSGEVG00005007947) TNRC18 (ENSGEVG00005007897) SLC29A4 (ENSGEVG00005007844) WIPI2 (ENSGEVG00005007807) MMD2 (ENSGEVG00005007758) RADIL (ENSGEVG00005007727) AP5Z1 (ENSGEVG00005007693) FOXK1 (ENSGEVG00005007667) ENSGEVG00005006677 ENSGEVG00005005895 ENSGEVG00005005359 SDK1 (ENSGEVG00005004810) CARD11 (ENSGEVG00005004474) GNA12 (ENSGEVG00005004329) AMZ1 (ENSGEVG00005004204) Abingdon island giant tortoise DUPLICATION Abingdon island giant tortoise MODERN SPECIES 2604 SMURF1 (ENSCABG00000006174) ENSCABG00000006171 RNF216 (ENSCABG00000005893) FSCN1 (ENSCABG00000005872) ##21 ACTB (ENSCABG00000005869) ##22 FBXL18 (ENSCABG00000005867) SLC29A4 (ENSCABG00000005806) WIPI2 (ENSCABG00000005798) MMD2 (ENSCABG00000005794) RADIL (ENSCABG00000005792) AP5Z1 (ENSCABG00000005718) FOXK1 (ENSCABG00000005714) ENSCABG00000005664 ENSCABG00000005553 ENSCABG00000004969 SDK1 (ENSCABG00000004895) CARD11 (ENSCABG00000004867) Abingdon island giant tortoise MODERN SPECIES 19 ENSCABG00000010091 ##22 Abingdon island giant tortoise MODERN SPECIES 2116 ENSCABG00000018176 ENSCABG00000018175 ENSCABG00000018174 ENSCABG00000018153 SHF (ENSCABG00000018149) ENSCABG00000018146 SEMA7A (ENSCABG00000018144) UBL7 (ENSCABG00000018142) ENSCABG00000018139 ##22 ENSCABG00000018138 ARID3B (ENSCABG00000018134) ENSCABG00000018131 ENSCABG00000018127 EDC3 (ENSCABG00000018124) ENSCABG00000018123 ENSCABG00000018122 ENSCABG00000018119 ENSCABG00000018116 ENSCABG00000018114 CSK (ENSCABG00000018109) CPLX3 (ENSCABG00000018105) ENSCABG00000018103 SCAMP2 (ENSCABG00000018100) MPI (ENSCABG00000018098) Chinese turtle DUPLICATION Chinese turtle MODERN SPECIES 1436 RBPMS2 (ENSPSIG00000013115) SORD (ENSPSIG00000013592) ENSPSIG00000001497 DUOX2 (ENSPSIG00000015528) ENSPSIG00000016935 ENSPSIG00000017189 SEC11A (ENSPSIG00000017436) ZNF592 (ENSPSIG00000017509) ENSPSIG00000017520 ALPK3 (ENSPSIG00000017667) ENSPSIG00000017784 SHF (ENSPSIG00000018158) COMMD4 (ENSPSIG00000018170) SEMA7A (ENSPSIG00000006471) UBL7 (ENSPSIG00000007153) ENSPSIG00000001500 ##22 ENSPSIG00000001509 ENSPSIG00000001515 Chinese turtle MODERN SPECIES 264 MAP2K3 (ENSPSIG00000011264) ENSPSIG00000001742 ATP5MF (ENSPSIG00000011253) CPSF4 (ENSPSIG00000011229) PTCD1 (ENSPSIG00000011184) BUD31 (ENSPSIG00000011153) PDAP1 (ENSPSIG00000011087) ARPC1A (ENSPSIG00000011034) ENSPSIG00000010963 SMURF1 (ENSPSIG00000010953) ENSPSIG00000001738 RNF216 (ENSPSIG00000010937) FSCN1 (ENSPSIG00000010881) ##21 ACTB (ENSPSIG00000010875) ##22 FBXL18 (ENSPSIG00000010848) TNRC18 (ENSPSIG00000010641) SLC29A4 (ENSPSIG00000010626) WIPI2 (ENSPSIG00000010520) MMD2 (ENSPSIG00000010464) RADIL (ENSPSIG00000010253) AP5Z1 (ENSPSIG00000010154) FOXK1 (ENSPSIG00000010095) ENSPSIG00000009282 ENSPSIG00000008012 SDK1 (ENSPSIG00000007622) CARD11 (ENSPSIG00000007230) GNA12 (ENSPSIG00000007203) AMZ1 (ENSPSIG00000007163) BRAT1 (ENSPSIG00000007017) Archosauria ANCESTRAL SPECIES 8 ENSGT00940000160875 ENSGT01030000234586.A.a.b ENSGT00510000046986 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000160705.C.b ENSGT01050000244891.B ENSGT00940000158690 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.b ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Australian saltwater crocodile MODERN SPECIES 46 MAP2K3 (ENSCPRG00005016043) ENSCPRG00005016049 ATP5MF (ENSCPRG00005016051) CPSF4 (ENSCPRG00005016053) PTCD1 (ENSCPRG00005016054) BUD31 (ENSCPRG00005016057) PDAP1 (ENSCPRG00005016062) ARPC1B (ENSCPRG00005016064) ARPC1A (ENSCPRG00005016070) ENSCPRG00005016109 KPNA7 (ENSCPRG00005016120) SMURF1 (ENSCPRG00005016127) ENSCPRG00005016185 RNF216 (ENSCPRG00005016190) FSCN1 (ENSCPRG00005016199) ##21 ACTB (ENSCPRG00005016203) ##22 FBXL18 (ENSCPRG00005016208) SLC29A4 (ENSCPRG00005016263) WIPI2 (ENSCPRG00005016270) MMD2 (ENSCPRG00005016281) RADIL (ENSCPRG00005016285) AP5Z1 (ENSCPRG00005016292) FOXK1 (ENSCPRG00005016315) ENSCPRG00005016322 ENSCPRG00005016326 SDK1 (ENSCPRG00005016331) CARD11 (ENSCPRG00005016359) GNA12 (ENSCPRG00005016367) AMZ1 (ENSCPRG00005016372) BRAT1 (ENSCPRG00005016378) ENSCPRG00005016381 Aves ANCESTRAL SPECIES 11 ENSGT00390000014840.a ENSGT00940000160875 ENSGT01030000234586.A.a.b ENSGT00510000046986 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT01050000244891.B ENSGT00940000158690 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.b ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 African ostrich DUPLICATION African ostrich MODERN SPECIES 880 ENSSCUG00000016568 ENSSCUG00000016570 EDC3 (ENSSCUG00000016571) CLK3 (ENSSCUG00000016574) ENSSCUG00000016576 ENSSCUG00000016578 ARID3B (ENSSCUG00000016579) ENSSCUG00000016580 ##22 SEMA7A (ENSSCUG00000016582) CYP11A1 (ENSSCUG00000016587) ENSSCUG00000016593 African ostrich MODERN SPECIES 253 ACTB (ENSSCUG00000003754) ##22 FBXL18 (ENSSCUG00000003757) TNRC18 (ENSSCUG00000003763) SLC29A4 (ENSSCUG00000003767) WIPI2 (ENSSCUG00000003780) ENSSCUG00000003832 ENSSCUG00000003835 AP5Z1 (ENSSCUG00000003840) FOXK1 (ENSSCUG00000003850) ENSSCUG00000003856 ENSSCUG00000003857 SDK1 (ENSSCUG00000003897) CARD11 (ENSSCUG00000003938) GNA12 (ENSSCUG00000003947) AMZ1 (ENSSCUG00000003950) BRAT1 (ENSSCUG00000003951) Neognathae ANCESTRAL SPECIES 10 ENSGT00390000014840.a ENSGT00940000160875 ENSGT01030000234586.A.a.b ENSGT00510000046986 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT01050000244891.B ENSGT00940000158690 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.b ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Neognathae_b ANCESTRAL SPECIES 12 ENSGT00390000006617 ENSGT00390000014840.a ENSGT00940000160875 ENSGT01030000234586.A.a.b ENSGT00510000046986 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT01050000244891.B ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.b ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Passeriformes ANCESTRAL SPECIES 11 ENSGT00390000014840.a ENSGT00940000160875 ENSGT01030000234586.A.a.b ENSGT00510000046986 ENSGT00940000165557 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300.o ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT01050000244891.B ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.b ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Great tit DUPLICATION Great tit MODERN SPECIES 1 PPCDC (ENSPMJG00000008057) SCAMP5 (ENSPMJG00000008053) RPP25 (ENSPMJG00000008051) COX5A (ENSPMJG00000008050) ENSPMJG00000008048 FAM219B (ENSPMJG00000008047) MPI (ENSPMJG00000008044) SCAMP2 (ENSPMJG00000008042) ULK3 (ENSPMJG00000008034) CPLX3 (ENSPMJG00000008030) CSK (ENSPMJG00000008026) ENSPMJG00000008022 ENSPMJG00000008019 EDC3 (ENSPMJG00000008012) CLK3 (ENSPMJG00000007705) ENSPMJG00000007704 ##22 ENSPMJG00000007703 UBL7 (ENSPMJG00000007598) SEMA7A (ENSPMJG00000007590) CYP11A1 (ENSPMJG00000007588) STRA6 (ENSPMJG00000007582) ISLR (ENSPMJG00000007581) LOXL1 (ENSPMJG00000007573) INSYN1 (ENSPMJG00000007565) CD276 (ENSPMJG00000007557) NPTN (ENSPMJG00000007548) REC114 (ENSPMJG00000007545) HCN4 (ENSPMJG00000007543) NEO1 (ENSPMJG00000007535) ADPGK (ENSPMJG00000007516) BBS4 (ENSPMJG00000007513) Great tit MODERN SPECIES 5 ENSPMJG00000017416 NATD1 (ENSPMJG00000017415) MAP2K3 (ENSPMJG00000017414) ENSPMJG00000017413 ATP5MF (ENSPMJG00000017412) CPSF4 (ENSPMJG00000017411) PTCD1 (ENSPMJG00000017410) BUD31 (ENSPMJG00000017409) PDAP1 (ENSPMJG00000017408) ARPC1B (ENSPMJG00000017407) ARPC1A (ENSPMJG00000017406) KPNA7 (ENSPMJG00000017404) SMURF1 (ENSPMJG00000017403) RNF216 (ENSPMJG00000017402) FSCN1 (ENSPMJG00000017401) ##21 ACTB (ENSPMJG00000017400) ##22 FBXL18 (ENSPMJG00000017399) TNRC18 (ENSPMJG00000017396) SLC29A4 (ENSPMJG00000017395) WIPI2 (ENSPMJG00000017394) MMD2 (ENSPMJG00000017393) RADIL (ENSPMJG00000017392) AP5Z1 (ENSPMJG00000017391) FOXK1 (ENSPMJG00000017390) ENSPMJG00000017389 ENSPMJG00000017388 ENSPMJG00000017387 SDK1 (ENSPMJG00000017386) CARD11 (ENSPMJG00000017383) GNA12 (ENSPMJG00000017381) AMZ1 (ENSPMJG00000017380) Passeriformes_d ANCESTRAL SPECIES 11 ENSGT00390000014840.a ENSGT00940000160875 ENSGT01030000234586.A.a.b ENSGT00510000046986 ENSGT00940000165557 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300.o ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT01050000244891.B ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.b ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Flycatcher DUPLICATION Flycatcher MODERN SPECIES 1 C15orf39 (ENSFALG00000026259) PPCDC (ENSFALG00000024156) RPP25 (ENSFALG00000015221) COX5A (ENSFALG00000010854) FAM219B (ENSFALG00000010860) MPI (ENSFALG00000010862) SCAMP2 (ENSFALG00000010876) ULK3 (ENSFALG00000010904) CPLX3 (ENSFALG00000010930) CSK (ENSFALG00000010945) ENSFALG00000010971 ENSFALG00000004526 EDC3 (ENSFALG00000004543) CLK3 (ENSFALG00000004563) ARID3B (ENSFALG00000004588) ENSFALG00000004593 ##22 UBL7 (ENSFALG00000004597) SEMA7A (ENSFALG00000004609) ENSFALG00000012201 STRA6 (ENSFALG00000012228) ENSFALG00000026335 ISLR2 (ENSFALG00000024473) ENSFALG00000025051 ENSFALG00000012257 CD276 (ENSFALG00000009402) NPTN (ENSFALG00000026414) REC114 (ENSFALG00000009434) HCN4 (ENSFALG00000009444) NEO1 (ENSFALG00000009473) ENSFALG00000023844 ADPGK (ENSFALG00000009511) Flycatcher MODERN SPECIES 5 TMEM11 (ENSFALG00000014240) NATD1 (ENSFALG00000023203) MAP2K3 (ENSFALG00000013796) KCNJ12 (ENSFALG00000027206) ATP5MF (ENSFALG00000013801) CPSF4 (ENSFALG00000024016) PTCD1 (ENSFALG00000013803) ENSFALG00000013804 PDAP1 (ENSFALG00000025682) ARPC1A (ENSFALG00000013815) KPNA7 (ENSFALG00000013820) SMURF1 (ENSFALG00000013824) ENSFALG00000014244 RNF216 (ENSFALG00000013825) FSCN1 (ENSFALG00000013827) ##21 ACTB (ENSFALG00000013828) ##22 FBXL18 (ENSFALG00000013829) TNRC18 (ENSFALG00000013830) SLC29A4 (ENSFALG00000013831) WIPI2 (ENSFALG00000028204) MMD2 (ENSFALG00000013836) RADIL (ENSFALG00000013838) AP5Z1 (ENSFALG00000013840) FOXK1 (ENSFALG00000013841) ENSFALG00000013844 ENSFALG00000013847 SDK1 (ENSFALG00000013859) CARD11 (ENSFALG00000013871) GNA12 (ENSFALG00000024808) AMZ1 (ENSFALG00000013880) ENSFALG00000013883 Flycatcher MODERN SPECIES 8 ENSFALG00000026539 SDK2 (ENSFALG00000012827) RPL38 (ENSFALG00000023195) TTYH2 (ENSFALG00000012787) ENSFALG00000012762 BTBD17 (ENSFALG00000012748) GPR142 (ENSFALG00000012741) GPRC5C (ENSFALG00000024995) CCDC137 (ENSFALG00000012722) #15 PDE6G (ENSFALG00000023175) #17 TSPAN10 (ENSFALG00000012693) #18 NPLOC4 (ENSFALG00000012683) #19 ENSFALG00000028648 FAAP100 (ENSFALG00000012667) #20 FSCN2 (ENSFALG00000012651) #21 ENSFALG00000012637 ##22 SLC38A10 (ENSFALG00000012607) #25 TEPSIN (ENSFALG00000012600) #27 CEP131 (ENSFALG00000012596) #28 AATK (ENSFALG00000024287) #30 BAIAP2 (ENSFALG00000012585) #31 CHMP6 (ENSFALG00000012573) #32 RPTOR (ENSFALG00000012530) #33 ENSFALG00000022886 NPTX1 (ENSFALG00000012489) #35 ENSFALG00000027958 RNF213 (ENSFALG00000012461) SLC26A11 (ENSFALG00000012437) SGSH (ENSFALG00000012425) GAA (ENSFALG00000012383) ENSFALG00000012369 Passeriformes_g ANCESTRAL SPECIES 12 ENSGT00390000006617 ENSGT00390000014840.a ENSGT00940000160875 ENSGT01030000234586.A.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300.o ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT01050000244891.B ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.b ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Passeroidea ANCESTRAL SPECIES 11 ENSGT00940000160875 ENSGT01030000234586.A.a.b ENSGT00510000046986 ENSGT00390000001055 ENSGT00940000165557 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300.o ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT01050000244891.B ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.b ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Zebra finch DUPLICATION Zebra finch MODERN SPECIES 1 ENSTGUG00000023668 ENSTGUG00000029520 ENSTGUG00000023771 ENSTGUG00000003905 ENSTGUG00000003912 ENSTGUG00000027375 ENSTGUG00000020842 ENSTGUG00000020946 ENSTGUG00000023044 ENSTGUG00000003977 ENSTGUG00000027345 ENSTGUG00000023262 ENSTGUG00000029125 ENSTGUG00000028190 ENSTGUG00000020419 ENSTGUG00000021154 ##22 ENSTGUG00000028872 ENSTGUG00000019533 ENSTGUG00000028659 ENSTGUG00000021862 ENSTGUG00000023529 ENSTGUG00000023160 ENSTGUG00000027002 ENSTGUG00000029194 ENSTGUG00000019779 ENSTGUG00000028371 ENSTGUG00000026643 ENSTGUG00000025659 ENSTGUG00000022310 ENSTGUG00000026915 ENSTGUG00000027113 Zebra finch MODERN SPECIES 5 USP22 (ENSTGUG00000007455) DHRS7B (ENSTGUG00000007489) TMEM11 (ENSTGUG00000007500) MAP2K3 (ENSTGUG00000007502) ENSTGUG00000029126 ATP5MF (ENSTGUG00000027774) CPSF4 (ENSTGUG00000007552) PTCD1 (ENSTGUG00000007563) BUD31 (ENSTGUG00000007584) PDAP1 (ENSTGUG00000007588) ARPC1B (ENSTGUG00000007594) KPNA7 (ENSTGUG00000007626) SMURF1 (ENSTGUG00000007637) RNF216 (ENSTGUG00000007658) FSCN1 (ENSTGUG00000007668) ##21 ACTB (ENSTGUG00000004138) ##22 FBXL18 (ENSTGUG00000007676) TNRC18 (ENSTGUG00000007679) SLC29A4 (ENSTGUG00000007691) WIPI2 (ENSTGUG00000007704) MMD2 (ENSTGUG00000029335) RADIL (ENSTGUG00000007743) AP5Z1 (ENSTGUG00000007760) FOXK1 (ENSTGUG00000007783) ENSTGUG00000007790 ENSTGUG00000007903 SDK1 (ENSTGUG00000007946) CARD11 (ENSTGUG00000008023) GNA12 (ENSTGUG00000026601) AMZ1 (ENSTGUG00000008055) BRAT1 (ENSTGUG00000008077) Common canary DUPLICATION Common canary MODERN SPECIES 59 PPCDC (ENSSCAG00000013287) SCAMP5 (ENSSCAG00000013296) RPP25 (ENSSCAG00000013308) COX5A (ENSSCAG00000013310) FAM219B (ENSSCAG00000013313) MPI (ENSSCAG00000013321) SCAMP2 (ENSSCAG00000013327) ULK3 (ENSSCAG00000013338) CPLX3 (ENSSCAG00000013349) CSK (ENSSCAG00000013354) ENSSCAG00000013371 ENSSCAG00000013431 ENSSCAG00000013446 CLK3 (ENSSCAG00000013462) ARID3B (ENSSCAG00000013486) ENSSCAG00000013494 ##22 UBL7 (ENSSCAG00000013498) SEMA7A (ENSSCAG00000013506) INSYN1 (ENSSCAG00000013508) CD276 (ENSSCAG00000013511) ENSSCAG00000013516 ENSSCAG00000013519 REC114 (ENSSCAG00000013522) HCN4 (ENSSCAG00000013533) ENSSCAG00000013539 Common canary MODERN SPECIES 17 TMEM11 (ENSSCAG00000008929) NATD1 (ENSSCAG00000008931) MAP2K3 (ENSSCAG00000008937) ENSSCAG00000008942 ENSSCAG00000008947 CPSF4 (ENSSCAG00000008956) PTCD1 (ENSSCAG00000008968) ENSSCAG00000008991 PDAP1 (ENSSCAG00000008999) ARPC1B (ENSSCAG00000009006) ARPC1A (ENSSCAG00000009009) KPNA7 (ENSSCAG00000009027) SMURF1 (ENSSCAG00000009043) RNF216 (ENSSCAG00000009048) FSCN1 (ENSSCAG00000009055) ##21 ACTB (ENSSCAG00000009060) ##22 FBXL18 (ENSSCAG00000009067) ENSSCAG00000009080 SLC29A4 (ENSSCAG00000009090) WIPI2 (ENSSCAG00000009100) MMD2 (ENSSCAG00000009114) RADIL (ENSSCAG00000009121) AP5Z1 (ENSSCAG00000009139) FOXK1 (ENSSCAG00000009164) ENSSCAG00000009176 ENSSCAG00000009185 ENSSCAG00000009196 SDK1 (ENSSCAG00000009227) CARD11 (ENSSCAG00000009264) GNA12 (ENSSCAG00000009272) AMZ1 (ENSSCAG00000009276) Medium ground finch DUPLICATION Medium ground finch MODERN SPECIES 293 ARID3B (ENSGFOG00000002045) ENSGFOG00000002057 ##22 UBL7 (ENSGFOG00000002063) SEMA7A (ENSGFOG00000002143) CYP11A1 (ENSGFOG00000002807) STRA6 (ENSGFOG00000003030) ENSGFOG00000003047 INSYN1 (ENSGFOG00000003068) CD276 (ENSGFOG00000003104) NPTN (ENSGFOG00000003126) REC114 (ENSGFOG00000003140) HCN4 (ENSGFOG00000003175) Medium ground finch MODERN SPECIES 339 ENSGFOG00000004950 SSTR2 (ENSGFOG00000004957) COG1 (ENSGFOG00000004968) ENSGFOG00000005081 ENSGFOG00000005087 ENSGFOG00000005091 RPL38 (ENSGFOG00000005216) ENSGFOG00000005260 BTBD17 (ENSGFOG00000005497) ENSGFOG00000005505 CCDC137 (ENSGFOG00000005514) #15 PDE6G (ENSGFOG00000005519) #17 TSPAN10 (ENSGFOG00000005524) #18 NPLOC4 (ENSGFOG00000005530) #19 FAAP100 (ENSGFOG00000005538) #20 ENSGFOG00000005551 ##22 Medium ground finch MODERN SPECIES 22 TMEM11 (ENSGFOG00000008494) NATD1 (ENSGFOG00000008499) MAP2K3 (ENSGFOG00000008502) ENSGFOG00000008509 ENSGFOG00000008510 CPSF4 (ENSGFOG00000008516) PTCD1 (ENSGFOG00000008525) ENSGFOG00000008538 PDAP1 (ENSGFOG00000008542) ARPC1A (ENSGFOG00000008549) ARPC1B (ENSGFOG00000008561) KPNA7 (ENSGFOG00000008572) SMURF1 (ENSGFOG00000008634) RNF216 (ENSGFOG00000009308) FSCN1 (ENSGFOG00000009318) ##21 ENSGFOG00000009329 ##22 FBXL18 (ENSGFOG00000009340) SLC29A4 (ENSGFOG00000009402) WIPI2 (ENSGFOG00000009409) MMD2 (ENSGFOG00000009429) RADIL (ENSGFOG00000009439) AP5Z1 (ENSGFOG00000009472) FOXK1 (ENSGFOG00000009540) ENSGFOG00000009559 ENSGFOG00000009594 SDK1 (ENSGFOG00000009659) CARD11 (ENSGFOG00000010356) GNA12 (ENSGFOG00000010526) AMZ1 (ENSGFOG00000010529) BRAT1 (ENSGFOG00000010539) ENSGFOG00000010550 Neognathae_c ANCESTRAL SPECIES 14 ENSGT00390000006617 ENSGT00390000014840.a ENSGT00940000160875 ENSGT01030000234586.A.a.b ENSGT00510000046986 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT01050000244891.B ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.b ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Golden eagle DUPLICATION Golden eagle MODERN SPECIES 21 PPCDC (ENSACCG00020000834) SCAMP5 (ENSACCG00020000806) RPP25 (ENSACCG00020000772) COX5A (ENSACCG00020000744) FAM219B (ENSACCG00020000720) MPI (ENSACCG00020000699) SCAMP2 (ENSACCG00020000682) ULK3 (ENSACCG00020000645) CPLX3 (ENSACCG00020000590) CSK (ENSACCG00020000573) ENSACCG00020000547 ENSACCG00020000531 EDC3 (ENSACCG00020000515) CLK3 (ENSACCG00020000458) ARID3B (ENSACCG00020000325) ENSACCG00020000304 ##22 UBL7 (ENSACCG00020003473) SEMA7A (ENSACCG00020003443) CYP11A1 (ENSACCG00020003410) ENSACCG00020003356 STRA6 (ENSACCG00020003200) ISLR (ENSACCG00020003096) ISLR2 (ENSACCG00020003077) ENSACCG00020003059 STOML1 (ENSACCG00020003039) ENSACCG00020003031 ENSACCG00020003021 ENSACCG00020003001 LOXL1 (ENSACCG00020002945) ENSACCG00020002905 INSYN1 (ENSACCG00020002891) Golden eagle MODERN SPECIES 17 NATD1 (ENSACCG00020012513) MAP2K3 (ENSACCG00020012553) ENSACCG00020012599 ATP5MF (ENSACCG00020012613) CPSF4 (ENSACCG00020012629) PTCD1 (ENSACCG00020012652) BUD31 (ENSACCG00020012680) PDAP1 (ENSACCG00020012701) ARPC1B (ENSACCG00020012730) ARPC1A (ENSACCG00020012791) KPNA7 (ENSACCG00020012868) SMURF1 (ENSACCG00020012938) ENSACCG00020012955 RNF216 (ENSACCG00020012969) FSCN1 (ENSACCG00020012998) ##21 ACTB (ENSACCG00020013020) ##22 FBXL18 (ENSACCG00020013037) TNRC18 (ENSACCG00020013096) SLC29A4 (ENSACCG00020013147) WIPI2 (ENSACCG00020013177) MMD2 (ENSACCG00020013196) RADIL (ENSACCG00020013236) AP5Z1 (ENSACCG00020013298) FOXK1 (ENSACCG00020013339) ENSACCG00020013358 ENSACCG00020013389 SDK1 (ENSACCG00020013688) CARD11 (ENSACCG00020013852) GNA12 (ENSACCG00020013942) AMZ1 (ENSACCG00020013958) BRAT1 (ENSACCG00020013975) Kakapo DUPLICATION Kakapo MODERN SPECIES 1 C15orf39 (ENSSHBG00005018228) PPCDC (ENSSHBG00005018235) SCAMP5 (ENSSHBG00005018238) COX5A (ENSSHBG00005018242) FAM219B (ENSSHBG00005018245) MPI (ENSSHBG00005018249) SCAMP2 (ENSSHBG00005018250) ULK3 (ENSSHBG00005018252) CPLX3 (ENSSHBG00005018258) CSK (ENSSHBG00005018262) ENSSHBG00005018266 ENSSHBG00005018271 EDC3 (ENSSHBG00005018274) CLK3 (ENSSHBG00005018277) ARID3B (ENSSHBG00005018281) ENSSHBG00005018288 ##22 UBL7 (ENSSHBG00005018292) SEMA7A (ENSSHBG00005018296) CYP11A1 (ENSSHBG00005018302) STRA6 (ENSSHBG00005018310) ISLR2 (ENSSHBG00005018316) ENSSHBG00005018319 STOML1 (ENSSHBG00005018327) ENSSHBG00005018331 ENSSHBG00005018335 ENSSHBG00005018337 LOXL1 (ENSSHBG00005018340) INSYN1 (ENSSHBG00005018345) CD276 (ENSSHBG00005018354) NPTN (ENSSHBG00005018356) ENSSHBG00005018361 Kakapo MODERN SPECIES 21 NATD1 (ENSSHBG00005009769) MAP2K3 (ENSSHBG00005009760) ENSSHBG00005009753 ATP5MF (ENSSHBG00005009739) CPSF4 (ENSSHBG00005009724) PTCD1 (ENSSHBG00005009712) BUD31 (ENSSHBG00005009702) PDAP1 (ENSSHBG00005009661) ARPC1B (ENSSHBG00005009647) ARPC1A (ENSSHBG00005009628) KPNA7 (ENSSHBG00005009584) SMURF1 (ENSSHBG00005009565) ENSSHBG00005009548 RNF216 (ENSSHBG00005009526) FSCN1 (ENSSHBG00005009511) ##21 ACTB (ENSSHBG00005009495) ##22 FBXL18 (ENSSHBG00005009478) TNRC18 (ENSSHBG00005009360) SLC29A4 (ENSSHBG00005009331) WIPI2 (ENSSHBG00005009312) MMD2 (ENSSHBG00005009293) RADIL (ENSSHBG00005009272) AP5Z1 (ENSSHBG00005009252) FOXK1 (ENSSHBG00005009241) ENSSHBG00005009224 ENSSHBG00005008963 SDK1 (ENSSHBG00005005406) CARD11 (ENSSHBG00005005085) GNA12 (ENSSHBG00005005070) AMZ1 (ENSSHBG00005005063) ENSSHBG00005005060 Galloanserae ANCESTRAL SPECIES 9 ENSGT00390000014840.a ENSGT00940000160875 ENSGT01030000234586.A.a.b ENSGT00510000046986 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT01050000244891.B ENSGT00940000158690 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.b ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Phasianidae ANCESTRAL SPECIES 10 ENSGT00390000014840.a ENSGT00940000160875 ENSGT01030000234586.A.a.b ENSGT00510000046986 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT01050000244891.B ENSGT00940000158690 ENSGT01030000234534.C ENSGT00510000048032.a ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.b ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Japanese quail MODERN SPECIES 1 SCAMP5 (ENSCJPG00005007532) RPP25 (ENSCJPG00005007533) COX5A (ENSCJPG00005007534) FAM219B (ENSCJPG00005007535) MPI (ENSCJPG00005007536) SCAMP2 (ENSCJPG00005007537) ULK3 (ENSCJPG00005007538) CPLX3 (ENSCJPG00005007539) CSK (ENSCJPG00005007540) ENSCJPG00005007541 ENSCJPG00005007542 ENSCJPG00005007543 EDC3 (ENSCJPG00005007544) CLK3 (ENSCJPG00005007545) ARID3B (ENSCJPG00005007746) ENSCJPG00005007748 ##22 UBL7 (ENSCJPG00005007754) SEMA7A (ENSCJPG00005007758) CYP11A1 (ENSCJPG00005007762) ENSCJPG00005007760 STRA6 (ENSCJPG00005007766) ISLR (ENSCJPG00005007774) ISLR2 (ENSCJPG00005007778) ENSCJPG00005007780 STOML1 (ENSCJPG00005007781) ENSCJPG00005007782 ENSCJPG00005007783 ENSCJPG00005007797 COMMD4 (ENSCJPG00005007798) NEIL1 (ENSCJPG00005007814) MAN2C1 (ENSCJPG00005007815) Phasianidae_b ANCESTRAL SPECIES 10 ENSGT00390000014840.a ENSGT00940000160875 ENSGT01030000234586.A.a.b ENSGT00510000046986 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT01050000244891.B ENSGT00940000158690 ENSGT01030000234534.C ENSGT00510000048032.a ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.b ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Chicken DUPLICATION Chicken MODERN SPECIES 1 PPCDC (ENSGALG00010023694) SCAMP5 (ENSGALG00010023720) RPP25 (ENSGALG00010023749) COX5A (ENSGALG00010023764) FAM219B (ENSGALG00010023448) MPI (ENSGALG00010023456) SCAMP2 (ENSGALG00010023476) ULK3 (ENSGALG00010023514) CPLX3 (ENSGALG00010023531) CSK (ENSGALG00010023593) CYP1A2 (ENSGALG00010021117) CYP1A1 (ENSGALG00010021122) EDC3 (ENSGALG00010021131) CLK3 (ENSGALG00010021135) ARID3B (ENSGALG00010021147) ACTG1 (ENSGALG00010021158) ##22 UBL7 (ENSGALG00010021170) SEMA7A (ENSGALG00010021187) CYP11A1 (ENSGALG00010021194) ENSGALG00010021208 STRA6 (ENSGALG00010021219) ISLR (ENSGALG00010021250) ISLR2 (ENSGALG00010021234) ENSGALG00010021256 STOML1 (ENSGALG00010021263) ENSGALG00010021272 ENSGALG00010021282 ZP3 (ENSGALG00010021314) COMMD4 (ENSGALG00010021330) NEIL1 (ENSGALG00010021345) MAN2C1 (ENSGALG00010021394) Chicken MODERN SPECIES 5 NATD1 (ENSGALG00010021573) MAP2K3 (ENSGALG00010021550) KCNJ12 (ENSGALG00010021526) ATP5J2 (ENSGALG00010021454) CPSF4 (ENSGALG00010021431) PTCD1 (ENSGALG00010021424) BUD31 (ENSGALG00010021414) PDAP1 (ENSGALG00010021401) ARPC1B (ENSGALG00010021362) ARPC1A (ENSGALG00010021325) KPNA7 (ENSGALG00010021313) SMURF1 (ENSGALG00010021301) ENSGALG00010021271 RNF216 (ENSGALG00010021251) FSCN1 (ENSGALG00010021237) ##21 ACTB (ENSGALG00010021232) ##22 FBXL18 (ENSGALG00010021214) TNRC18 (ENSGALG00010021188) SLC29A4 (ENSGALG00010021172) WIPI2 (ENSGALG00010021162) MMD2 (ENSGALG00010021159) RADIL (ENSGALG00010021155) AP5Z1 (ENSGALG00010021146) FOXK1 (ENSGALG00010021144) CYP3A5 (ENSGALG00010017603) CYP3A4 (ENSGALG00010017848) ENSGALG00010022582 SDK1 (ENSGALG00010021098) CARD11 (ENSGALG00010017184) GNA12 (ENSGALG00010020116) AMZ1 (ENSGALG00010020112) Turkey DUPLICATION Turkey MODERN SPECIES 3 C15orf39 (ENSMGAG00000002194) PPCDC (ENSMGAG00000002242) SCAMP5 (ENSMGAG00000020681) RPP25 (ENSMGAG00000002266) COX5A (ENSMGAG00000002269) FAM219B (ENSMGAG00000020389) MPI (ENSMGAG00000002282) SCAMP2 (ENSMGAG00000002302) ULK3 (ENSMGAG00000002376) CPLX3 (ENSMGAG00000002391) CSK (ENSMGAG00000002394) CYP1A5 (ENSMGAG00000002518) ENSMGAG00000002617 CLK3 (ENSMGAG00000002749) ARID3B (ENSMGAG00000002805) ENSMGAG00000016108 ##22 UBL7 (ENSMGAG00000002826) SEMA7A (ENSMGAG00000002642) CYP11A1 (ENSMGAG00000002665) ENSMGAG00000008250 ENSMGAG00000016399 ENSMGAG00000003093 STRA6 (ENSMGAG00000002915) ISLR (ENSMGAG00000017537) ISLR2 (ENSMGAG00000022236) ENSMGAG00000003039 ENSMGAG00000003021 ENSMGAG00000022191 ENSMGAG00000002965 ENSMGAG00000019624 ENSMGAG00000003065 Turkey MODERN SPECIES 7 ENSMGAG00000002959 ENSMGAG00000002952 CARD11 (ENSMGAG00000002976) ENSMGAG00000019406 ENSMGAG00000003313 CYP3A37 (ENSMGAG00000003542) FOXK1 (ENSMGAG00000003278) ENSMGAG00000003799 ENSMGAG00000003768 MMD2 (ENSMGAG00000003819) ENSMGAG00000003831 ENSMGAG00000003866 ENSMGAG00000003892 ENSMGAG00000021420 ENSMGAG00000003918 ENSMGAG00000003960 ##22 ENSMGAG00000018626 ##21 ENSMGAG00000003905 ##21 ENSMGAG00000016921 ENSMGAG00000003930 ENSMGAG00000003983 ENSMGAG00000003976 ENSMGAG00000021321 KPNA7 (ENSMGAG00000004051) PDAP1 (ENSMGAG00000004176) ENSMGAG00000004152 ENSMGAG00000004113 ENSMGAG00000004211 BUD31 (ENSMGAG00000004195) ENSMGAG00000018852 CPSF4 (ENSMGAG00000004235) Turkey MODERN SPECIES 1009 ENSMGAG00000008319 ##22 Anatidae ANCESTRAL SPECIES 7 ENSGT00390000006617 ENSGT00390000014840.a ENSGT00940000160875 ENSGT01030000234586.A.a.b ENSGT00510000046986 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT01050000244891.B ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293.c ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.b ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Pink-footed goose MODERN SPECIES 59 TMEM11 (ENSABRG00000001303) NATD1 (ENSABRG00000001319) MAP2K3 (ENSABRG00000001410) ENSABRG00000001514 ATP5MF (ENSABRG00000001534) CPSF4 (ENSABRG00000001549) PTCD1 (ENSABRG00000001568) BUD31 (ENSABRG00000001589) PDAP1 (ENSABRG00000001687) ARPC1B (ENSABRG00000001702) ARPC1A (ENSABRG00000001764) KPNA7 (ENSABRG00000001828) SMURF1 (ENSABRG00000001864) RNF216 (ENSABRG00000001919) ENSABRG00000001980 ##21 ACTB (ENSABRG00000002004) ##22 FBXL18 (ENSABRG00000002032) TNRC18 (ENSABRG00000002069) SLC29A4 (ENSABRG00000002112) WIPI2 (ENSABRG00000002125) MMD2 (ENSABRG00000002148) RADIL (ENSABRG00000002193) AP5Z1 (ENSABRG00000002241) FOXK1 (ENSABRG00000002286) ENSABRG00000002324 ENSABRG00000002537 SDK1 (ENSABRG00000002854) CARD11 (ENSABRG00000005792) GNA12 (ENSABRG00000005898) AMZ1 (ENSABRG00000005913) BRAT1 (ENSABRG00000005935) Duck DUPLICATION Duck MODERN SPECIES 2 NEO1 (ENSAPLG00000015725) HCN4 (ENSAPLG00000011270) REC114 (ENSAPLG00000015657) NPTN (ENSAPLG00000015581) CD276 (ENSAPLG00000030629) ENSAPLG00000015295 ENSAPLG00000031235 C15orf39 (ENSAPLG00000017861) PPCDC (ENSAPLG00000015222) ENSAPLG00000030869 ENSAPLG00000014902 EDC3 (ENSAPLG00000008957) ENSAPLG00000009101 ENSAPLG00000029296 ARID3B (ENSAPLG00000024634) ENSAPLG00000026526 ##22 UBL7 (ENSAPLG00000009465) SEMA7A (ENSAPLG00000011197) CYP11A1 (ENSAPLG00000031075) ENSAPLG00000023976 STRA6 (ENSAPLG00000010924) ISLR (ENSAPLG00000024884) ISLR2 (ENSAPLG00000011219) ENSAPLG00000001026 ENSAPLG00000028186 STOML1 (ENSAPLG00000011367) ENSAPLG00000019404 ENSAPLG00000011746 ENSAPLG00000012142 COMMD4 (ENSAPLG00000012146) NEIL1 (ENSAPLG00000021670) Duck MODERN SPECIES 6 DHRS7B (ENSAPLG00000007599) TMEM11 (ENSAPLG00000028416) NATD1 (ENSAPLG00000007590) ENSAPLG00000026453 ENSAPLG00000027874 ATP5MF (ENSAPLG00000007021) CPSF4 (ENSAPLG00000018571) PTCD1 (ENSAPLG00000006862) BUD31 (ENSAPLG00000006748) PDAP1 (ENSAPLG00000006542) ARPC1B (ENSAPLG00000020035) ARPC1A (ENSAPLG00000011059) KPNA7 (ENSAPLG00000010767) SMURF1 (ENSAPLG00000010476) RNF216 (ENSAPLG00000010364) ACTB (ENSAPLG00000010147) ##22 FBXL18 (ENSAPLG00000010121) TNRC18 (ENSAPLG00000028315) SLC29A4 (ENSAPLG00000010012) WIPI2 (ENSAPLG00000009715) ENSAPLG00000026450 AP5Z1 (ENSAPLG00000009165) FOXK1 (ENSAPLG00000009084) ENSAPLG00000007447 ENSAPLG00000005773 SDK1 (ENSAPLG00000004608) CARD11 (ENSAPLG00000003700) GNA12 (ENSAPLG00000003620) BRAT1 (ENSAPLG00000003300) ENSAPLG00000003199 ENSAPLG00000017182 Mammalia ANCESTRAL SPECIES 21 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT01000000214817 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C Platypus MODERN SPECIES 11 MAP2K3 (ENSOANG00000007732) ENSOANG00000007731 ATP5MF (ENSOANG00000007730) CPSF4 (ENSOANG00000007729) ENSOANG00000007728 BUD31 (ENSOANG00000007727) PDAP1 (ENSOANG00000007726) ARPC1B (ENSOANG00000007725) ARPC1A (ENSOANG00000007724) ENSOANG00000007722 KPNA7 (ENSOANG00000007721) SMURF1 (ENSOANG00000007719) ENSOANG00000007718 RNF216 (ENSOANG00000007717) FSCN1 (ENSOANG00000030243) ##21 ACTB (ENSOANG00000007716) ##22 FBXL18 (ENSOANG00000006566) TNRC18 (ENSOANG00000006567) SLC29A4 (ENSOANG00000006568) WIPI2 (ENSOANG00000006569) MMD2 (ENSOANG00000020170) RADIL (ENSOANG00000003311) AP5Z1 (ENSOANG00000003308) FOXK1 (ENSOANG00000003307) ENSOANG00000003306 ENSOANG00000003300 ENSOANG00000007309 ENSOANG00000010538 SDK1 (ENSOANG00000004329) CARD11 (ENSOANG00000004327) GNA12 (ENSOANG00000004326) Theria DUPLICATION Theria DUPLICATION Theria ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.a ##22 Eutheria ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.a ##22 Boreoeutheria ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.a ##22 Laurasiatheria ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.a ##22 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.a ##22 Artiodactyla ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.a ##22 Artiodactyla_a ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.a ##22 Artiodactyla_b ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.a ##22 Cetacea ANCESTRAL SPECIES 15 ENSGT00940000154368.k ENSGT00940000155748.b ENSGT00390000016042 ENSGT00390000017848 ENSGT00940000156914 ENSGT00940000153524.b.a.b ENSGT00390000008264 ENSGT00940000156008 ENSGT01030000234539.b.b.b ENSGT00390000000153.l.b.c.b.b ENSGT00930000151028 ENSGT00940000155303 ENSGT00940000154935 ENSGT00940000153289.a.a.a ENSGT00390000014618.a ENSGT00950000182960.a.a.a.a.b.qb.a ##22 ENSGT00390000004409 ENSGT00950000182869.e.a.a.f ENSGT00940000155540.b.b ENSGT00940000154628.B ENSGT00940000160190 ENSGT00940000157372 ENSGT00390000014320 ENSGT00940000158184 ENSGT01030000234543.D ENSGT01050000244971.C.d ENSGT00940000156481 ENSGT00470000042622 ENSGT00940000156237 ENSGT00940000156999 ENSGT00390000007683 Odontoceti ANCESTRAL SPECIES 14 ENSGT00940000154368.k ENSGT00940000155748.b ENSGT00390000016042 ENSGT00390000017848 ENSGT00940000156914 ENSGT00940000153524.b.a.b ENSGT00390000008264 ENSGT00940000156008 ENSGT01030000234539.b.b.b ENSGT00390000000153.l.b.c.b.b ENSGT00930000151028 ENSGT00940000155303 ENSGT00940000154935 ENSGT00940000153289.a.a.a ENSGT00390000014618.a ENSGT00950000182960.a.a.a.a.b.qb.a ##22 ENSGT00390000004409 ENSGT00950000182869.e.a.a.f ENSGT00940000155540.b.b ENSGT00940000154628.B ENSGT00940000160190 ENSGT00940000157372 ENSGT00390000014320 ENSGT00940000158184 ENSGT01030000234543.D ENSGT01050000244971.C.d ENSGT00940000156481 ENSGT00470000042622 ENSGT00940000156237 ENSGT00940000156999 ENSGT00390000007683 Sperm whale MODERN SPECIES 12 MBL2 (ENSPCTG00005006245) SFTPD (ENSPCTG00005006186) TMEM254 (ENSPCTG00005006162) ENSPCTG00005006115 ENSPCTG00005006100 ZMIZ1 (ENSPCTG00005006080) RPS24 (ENSPCTG00005005966) POLR3A (ENSPCTG00005005766) ENSPCTG00005005355 KCNMA1 (ENSPCTG00005004698) ENSPCTG00005004484 ENSPCTG00005004478 ENSPCTG00005004441 LRMDA (ENSPCTG00005004419) ENSPCTG00005004390 ENSPCTG00005020849 ##22 COMTD1 (ENSPCTG00005020832) VDAC2 (ENSPCTG00005020809) SAMD8 (ENSPCTG00005020782) DUSP13 (ENSPCTG00005020729) DUSP29 (ENSPCTG00005020706) KAT6B (ENSPCTG00005020615) ENSPCTG00005020588 ADK (ENSPCTG00005020477) AP3M1 (ENSPCTG00005020425) VCL (ENSPCTG00005020063) PLAU (ENSPCTG00005019863) CAMK2G (ENSPCTG00005019488) NDST2 (ENSPCTG00005019402) ZSWIM8 (ENSPCTG00005019308) CHCHD1 (ENSPCTG00005019254) Blue whale MODERN SPECIES 7 ENSBMSG00010022490 SFTPD (ENSBMSG00010022493) TMEM254 (ENSBMSG00010022495) PLAC9 (ENSBMSG00010022496) ANXA11 (ENSBMSG00010022498) ENSBMSG00010022499 ZCCHC24 (ENSBMSG00010022501) PPIF (ENSBMSG00010022502) ZMIZ1 (ENSBMSG00010022504) ENSBMSG00010022505 POLR3A (ENSBMSG00010022509) DLG5 (ENSBMSG00010022512) KCNMA1 (ENSBMSG00010022513) LRMDA (ENSBMSG00010012642) ZNF503 (ENSBMSG00010012691) ENSBMSG00010012699 ##22 COMTD1 (ENSBMSG00010012707) VDAC2 (ENSBMSG00010012729) SAMD8 (ENSBMSG00010012756) DUSP13 (ENSBMSG00010012774) DUSP29 (ENSBMSG00010012798) ENSBMSG00010012812 ADK (ENSBMSG00010012876) ENSBMSG00010012903 ENSBMSG00010012912 AP3M1 (ENSBMSG00010012921) VCL (ENSBMSG00010012946) PLAU (ENSBMSG00010012979) CAMK2G (ENSBMSG00010013090) NDST2 (ENSBMSG00010013319) ZSWIM8 (ENSBMSG00010013348) Laurasiatheria_b ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.a ##22 Laurasiatheria_c ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.a ##22 Equus ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.a ##22 Donkey MODERN SPECIES 22 PLAC8 (ENSEASG00005013345) ENSEASG00005038183 ENSEASG00005013341 COQ2 (ENSEASG00005013339) HPSE (ENSEASG00005013314) HELQ (ENSEASG00005013248) ENSEASG00005013234 ABRAXAS1 (ENSEASG00005030592) GPAT3 (ENSEASG00005013215) ENSEASG00005031620 NKX6-1 (ENSEASG00005031030) CDS1 (ENSEASG00005013203) WDFY3 (ENSEASG00005013124) ARHGAP24 (ENSEASG00005013101) MAPK10 (ENSEASG00005012811) ENSEASG00005034628 ##22 PTPN13 (ENSEASG00005012776) SLC10A6 (ENSEASG00005029221) C4orf36 (ENSEASG00005038157) AFF1 (ENSEASG00005012760) KLHL8 (ENSEASG00005012755) ENSEASG00005012752 HSD17B13 (ENSEASG00005012750) HSD17B11 (ENSEASG00005012747) NUDT9 (ENSEASG00005012745) SPARCL1 (ENSEASG00005012743) DSPP (ENSEASG00005012740) DMP1 (ENSEASG00005012738) IBSP (ENSEASG00005012734) MEPE (ENSEASG00005012732) SPP1 (ENSEASG00005012730) Euarchontoglires ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.a ##22 Primates ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.a ##22 Haplorrhini ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.a ##22 Simiiformes ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.a ##22 Catarrhini ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.a ##22 Hominoidea ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.a ##22 Hominidae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.a ##22 Homo/Pan/Gorilla group ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.a ##22 Homo/Pan group ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.a ##22 Pan ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.a ##22 Bonobo MODERN SPECIES 18 SV2C (ENSPPAG00000042256) F2RL2 (ENSPPAG00000036549) IQGAP2 (ENSPPAG00000029477) F2R (ENSPPAG00000034950) F2RL1 (ENSPPAG00000023823) S100Z (ENSPPAG00000038063) CRHBP (ENSPPAG00000041280) AGGF1 (ENSPPAG00000035969) ENSPPAG00000015926 ENSPPAG00000042326 PDE8B (ENSPPAG00000037153) ENSPPAG00000035224 WDR41 (ENSPPAG00000036126) OTP (ENSPPAG00000042915) TBCA (ENSPPAG00000037014) ENSPPAG00000044127 ##22 AP3B1 (ENSPPAG00000038854) SCAMP1 (ENSPPAG00000037862) LHFPL2 (ENSPPAG00000036923) ARSB (ENSPPAG00000040516) DMGDH (ENSPPAG00000022080) BHMT (ENSPPAG00000035095) JMY (ENSPPAG00000037761) ENSPPAG00000017260 HOMER1 (ENSPPAG00000032101) TENT2 (ENSPPAG00000035817) CMYA5 (ENSPPAG00000036589) MTX3 (ENSPPAG00000041435) THBS4 (ENSPPAG00000034900) SERINC5 (ENSPPAG00000039931) SPZ1 (ENSPPAG00000035315) Gorilla MODERN SPECIES 8 F2RL2 (ENSGGOG00000011789) IQGAP2 (ENSGGOG00000014696) F2R (ENSGGOG00000010442) F2RL1 (ENSGGOG00000007078) S100Z (ENSGGOG00000025895) CRHBP (ENSGGOG00000011139) AGGF1 (ENSGGOG00000010269) ZBED3 (ENSGGOG00000002896) ENSGGOG00000037102 ENSGGOG00000039702 PDE8B (ENSGGOG00000005317) WDR41 (ENSGGOG00000026798) ENSGGOG00000027406 OTP (ENSGGOG00000015687) ENSGGOG00000023547 ENSGGOG00000027597 ##22 AP3B1 (ENSGGOG00000001771) SCAMP1 (ENSGGOG00000015191) LHFPL2 (ENSGGOG00000003771) ARSB (ENSGGOG00000010450) DMGDH (ENSGGOG00000003203) BHMT2 (ENSGGOG00000003210) BHMT (ENSGGOG00000007558) JMY (ENSGGOG00000008560) ENSGGOG00000043244 HOMER1 (ENSGGOG00000000986) TENT2 (ENSGGOG00000023154) CMYA5 (ENSGGOG00000006288) MTX3 (ENSGGOG00000003916) THBS4 (ENSGGOG00000027002) SERINC5 (ENSGGOG00000016060) Marsupialia ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.a ##22 Opossum MODERN SPECIES 1 ENSMODG00000044859 ENSMODG00000050611 ENSMODG00000047538 ENSMODG00000049881 BEND6 (ENSMODG00000018724) ZNF451 (ENSMODG00000018722) BAG2 (ENSMODG00000018721) RAB23 (ENSMODG00000018720) PRIM2 (ENSMODG00000018715) KHDRBS2 (ENSMODG00000018714) ENSMODG00000018706 ENSMODG00000047559 ENSMODG00000048236 ENSMODG00000018701 PHF3 (ENSMODG00000018699) ENSMODG00000018689 ##22 ENSMODG00000046810 ENSMODG00000051568 ENSMODG00000046221 ENSMODG00000036499 ENSMODG00000018608 LMBRD1 (ENSMODG00000018586) COL19A1 (ENSMODG00000018584) COL9A1 (ENSMODG00000018579) ENSMODG00000045475 ENSMODG00000018567 ENSMODG00000042039 SDHAF4 (ENSMODG00000018571) SMAP1 (ENSMODG00000018563) ENSMODG00000039035 B3GAT2 (ENSMODG00000018561) Marsupialia_b ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.a ##22 Diprotodontia ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.a ##22 Diprotodontia_a ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.a ##22 koala MODERN SPECIES 106 BAZ2B (ENSPCIG00000003070) WDSUB1 (ENSPCIG00000002545) TANC1 (ENSPCIG00000002529) DAPL1 (ENSPCIG00000037017) ENSPCIG00000036633 PKP4 (ENSPCIG00000028795) ENSPCIG00000028794 UPP2 (ENSPCIG00000028123) ACVR1 (ENSPCIG00000004031) ENSPCIG00000004022 ACVR1C (ENSPCIG00000004001) CYTIP (ENSPCIG00000003994) ERMN (ENSPCIG00000003984) GALNT5 (ENSPCIG00000003972) GPD2 (ENSPCIG00000015066) ENSPCIG00000015071 ##22 NR4A2 (ENSPCIG00000015078) ENSPCIG00000023299 ENSPCIG00000023300 ENSPCIG00000032559 KCNJ3 (ENSPCIG00000028769) ENSPCIG00000009709 GALNT13 (ENSPCIG00000019129) Theria ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.b ##22 Eutheria ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.b ##22 Boreoeutheria ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.b ##22 Laurasiatheria ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.b ##22 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.b ##22 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.b ##22 Laurasiatheria_c ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.b ##22 Equus ANCESTRAL SPECIES 25 ENSGT00940000155539.a.a ENSGT00940000159163 ENSGT00390000016427 ENSGT00940000163940 ENSGT00940000157670 ENSGT00940000157705.l ENSGT00940000154616.b ENSGT00390000011708.a.k.a.a ENSGT00390000011708.a.k.b ENSGT00390000007962 ENSGT00870000136493.d ENSGT00390000009255 ENSGT00950000182866.D.c.g.c ENSGT00950000182866.D.c.h ENSGT00950000182866.D.c.g.d ENSGT00950000182960.a.a.a.a.b.qb.b ##22 ENSGT00940000156093 ENSGT00940000155458.tc ENSGT00520000058142 ENSGT00390000014500 ENSGT00390000005306 ENSGT00950000182929.D ENSGT00900000143310 ENSGT00950000182929.C ENSGT00390000015395 ENSGT00950000185356 ENSGT00950000182929.A ENSGT00940000157259.d ENSGT00950000183199.a.a ENSGT00390000010091.c ENSGT00940000155162 Donkey MODERN SPECIES 12 ANKK1 (ENSEASG00005006737) DRD2 (ENSEASG00005006735) TMPRSS5 (ENSEASG00005006720) ZW10 (ENSEASG00005006707) CLDN25 (ENSEASG00005006703) USP28 (ENSEASG00005006691) HTR3A (ENSEASG00005006687) ENSEASG00005028806 ZBTB16 (ENSEASG00005006684) C11orf71 (ENSEASG00005006678) RBM7 (ENSEASG00005031719) REXO2 (ENSEASG00005006674) NXPE1 (ENSEASG00005006668) NXPE4 (ENSEASG00005006666) ENSEASG00005006664 ENSEASG00005006660 ##22 CADM1 (ENSEASG00005006655) ENSEASG00005006652 ENSEASG00005031751 BUD13 (ENSEASG00005006650) ZPR1 (ENSEASG00005006581) APOA5 (ENSEASG00005024582) ENSEASG00005006573 APOA4 (ENSEASG00005006571) APOC3 (ENSEASG00005036051) ENSEASG00005006566 APOA1 (ENSEASG00005038098) SIK3 (ENSEASG00005006529) PAFAH1B2 (ENSEASG00005029720) SIDT2 (ENSEASG00005005820) TAGLN (ENSEASG00005005736) Horse MODERN SPECIES 28 DRD2 (ENSECAG00000013567) TMPRSS5 (ENSECAG00000023128) ZW10 (ENSECAG00000011623) CLDN25 (ENSECAG00000005722) USP28 (ENSECAG00000023344) HTR3A (ENSECAG00000020191) ZBTB16 (ENSECAG00000024358) ENSECAG00000004515 NNMT (ENSECAG00000042589) C7H11orf71 (ENSECAG00000005737) RBM7 (ENSECAG00000004636) REXO2 (ENSECAG00000005988) NXPE1 (ENSECAG00000013719) NXPE4 (ENSECAG00000012359) ENSECAG00000053989 ENSECAG00000050395 ##22 CADM1 (ENSECAG00000015144) ENSECAG00000028225 BUD13 (ENSECAG00000008863) ENSECAG00000032980 ZPR1 (ENSECAG00000010981) APOA5 (ENSECAG00000000418) APOA4 (ENSECAG00000004903) APOC3 (ENSECAG00000039785) APOA1 (ENSECAG00000009752) SIK3 (ENSECAG00000010252) ENSECAG00000058875 PAFAH1B2 (ENSECAG00000034204) SIDT2 (ENSECAG00000021466) TAGLN (ENSECAG00000056905) PCSK7 (ENSECAG00000017980) Euarchontoglires ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.b ##22 Euarchontoglires_A ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.b ##22 Tree shrew MODERN SPECIES 4300 ACTB (ENSTBEG00000012822) ##22 Marsupialia ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.b ##22 Opossum MODERN SPECIES 2 KCNG2 (ENSMODG00000011988) ENSMODG00000039089 CTDP1 (ENSMODG00000011995) NFATC1 (ENSMODG00000012018) ATP9B (ENSMODG00000012216) SALL3 (ENSMODG00000012231) GALR1 (ENSMODG00000012282) ENSMODG00000027479 MBP (ENSMODG00000012291) ZNF236 (ENSMODG00000012304) ENSMODG00000045385 ZNF516 (ENSMODG00000012315) ENSMODG00000046201 TSHZ1 (ENSMODG00000012317) PTGR3 (ENSMODG00000012320) ENSMODG00000000365 ##22 ZNF407 (ENSMODG00000012332) CNDP1 (ENSMODG00000012366) CNDP2 (ENSMODG00000012371) DIPK1C (ENSMODG00000012378) C18orf63 (ENSMODG00000012384) CYB5A (ENSMODG00000012386) TIMM21 (ENSMODG00000037747) FBXO15 (ENSMODG00000012399) NETO1 (ENSMODG00000012411) ENSMODG00000012418 ENSMODG00000048297 ENSMODG00000024691 ENSMODG00000036897 SOCS6 (ENSMODG00000021396) ENSMODG00000021397 Marsupialia_b ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.b ##22 Diprotodontia ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.b ##22 Diprotodontia_a ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.qb.b ##22 koala MODERN SPECIES 42 ENSPCIG00000015596 ENSPCIG00000015582 TEX14 (ENSPCIG00000015559) RAD51C (ENSPCIG00000015547) PPM1E (ENSPCIG00000015544) TRIM37 (ENSPCIG00000015543) ENSPCIG00000011136 ENSPCIG00000011141 SMG8 (ENSPCIG00000011142) GDPD1 (ENSPCIG00000021871) ENSPCIG00000021872 ENSPCIG00000021873 DHX40 (ENSPCIG00000021874) CLTC (ENSPCIG00000021875) PTRH2 (ENSPCIG00000021876) ENSPCIG00000021877 ##22 VMP1 (ENSPCIG00000021878) TUBD1 (ENSPCIG00000021879) RPS6KB1 (ENSPCIG00000021880) RNFT1 (ENSPCIG00000021881) MED13 (ENSPCIG00000027082) INTS2 (ENSPCIG00000027084) BRIP1 (ENSPCIG00000013168) TBX4 (ENSPCIG00000013174) TBX2 (ENSPCIG00000013176) BCAS3 (ENSPCIG00000013178) ENSPCIG00000036036 PPM1D (ENSPCIG00000013179) APPBP2 (ENSPCIG00000013180) CHCT1 (ENSPCIG00000013181) ENSPCIG00000013182 Theria ANCESTRAL SPECIES 9 ENSGT00940000157351 #9 ENSGT00940000159603 #10 ENSGT00940000161850 ENSGT00940000157969 ENSGT00940000156783 #11 ENSGT00390000000190 #12 ENSGT00940000158297 #13 ENSGT00730000111327 #14 ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00930000151136 #29 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00900000143604 #37 ENSGT00390000011880 ENSGT00630000089884.C Marsupialia ANCESTRAL SPECIES 6 ENSGT00940000160875 ENSGT01030000234586.A.a.b ENSGT00510000046986.a ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a.m ENSGT00940000160705.C.b ENSGT01050000244891.B ENSGT00940000158690 ENSGT00940000156819.a.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Opossum DUPLICATION Opossum DUPLICATION Opossum DUPLICATION Opossum MODERN SPECIES 6 DZIP1 (ENSMODG00000025001) CLDN10 (ENSMODG00000040715) ABCC4 (ENSMODG00000009315) GPR180 (ENSMODG00000009336) ENSMODG00000009373 ENSMODG00000042703 DCT (ENSMODG00000009395) ENSMODG00000044628 ENSMODG00000009404 ENSMODG00000044625 ENSMODG00000009418 ENSMODG00000028004 ENSMODG00000041121 ENSMODG00000043439 ENSMODG00000027581 ENSMODG00000024992 ##22 ENSMODG00000042016 ENSMODG00000051518 SLITRK5 (ENSMODG00000009776) ENSMODG00000051140 SLITRK6 (ENSMODG00000009929) ENSMODG00000040336 ENSMODG00000027682 SLITRK1 (ENSMODG00000024990) ENSMODG00000024989 ENSMODG00000000011 ENSMODG00000000015 ENSMODG00000028778 ENSMODG00000038690 ENSMODG00000024988 KLHL1 (ENSMODG00000000124) Opossum MODERN SPECIES ENSMODG00000040304 CSMD1 (ENSMODG00000014053) ENSMODG00000041110 ENSMODG00000042772 ENSMODG00000023192 ANGPT2 (ENSMODG00000012086) ENSMODG00000040564 AGPAT5 (ENSMODG00000012074) ENSMODG00000012060 ENSMODG00000012058 ENSMODG00000048680 ENSMODG00000046255 ENSMODG00000046925 ENSMODG00000040612 ENSMODG00000050123 ENSMODG00000012036 ##22 ENSMODG00000025765 ENSMODG00000041359 ENSMODG00000045179 CTSB (ENSMODG00000012029) FDFT1 (ENSMODG00000012022) NEIL2 (ENSMODG00000012005) GATA4 (ENSMODG00000011997) BLK (ENSMODG00000011985) FAM167A (ENSMODG00000011953) C1H2orf50 (ENSMODG00000049403) ENSMODG00000037365 ROCK2 (ENSMODG00000011938) ENSMODG00000051265 ENSMODG00000047076 ENSMODG00000048750 Opossum MODERN SPECIES 1 RASL10B (ENSMODG00000019126) ENSMODG00000019125 ENSMODG00000046981 MMP28 (ENSMODG00000019124) TAF15 (ENSMODG00000019123) ENSMODG00000019121 ENSMODG00000028688 ENSMODG00000028122 ENSMODG00000019120 ENSMODG00000019114 ENSMODG00000025694 ENSMODG00000019113 HEATR6 (ENSMODG00000019111) HNF1B (ENSMODG00000019108) ENSMODG00000047438 ENSMODG00000023202 ##22 ENSMODG00000019101 ENSMODG00000025693 ENSMODG00000019097 ENSMODG00000019012 ENSMODG00000018966 S100A11 (ENSMODG00000018920) S100A10 (ENSMODG00000046156) ENSMODG00000018917 C2CD4D (ENSMODG00000027860) RORC (ENSMODG00000018911) TDRKH (ENSMODG00000018906) OAZ3 (ENSMODG00000018904) MRPL9 (ENSMODG00000046753) RIIAD1 (ENSMODG00000039252) CELF3 (ENSMODG00000027673) Opossum MODERN SPECIES 5 MAP2K3 (ENSMODG00000042585) ENSMODG00000001377 ENSMODG00000025496 CPSF4 (ENSMODG00000001367) PTCD1 (ENSMODG00000001350) PDAP1 (ENSMODG00000001324) ARPC1B (ENSMODG00000001316) ENSMODG00000001303 ENSMODG00000001273 KPNA7 (ENSMODG00000001093) SMURF1 (ENSMODG00000001079) ENSMODG00000001061 ENSMODG00000048718 ENSMODG00000001052 FSCN1 (ENSMODG00000001028) ##21 ACTB (ENSMODG00000002647) ##22 FBXL18 (ENSMODG00000000999) TNRC18 (ENSMODG00000000994) SLC29A4 (ENSMODG00000000979) ENSMODG00000000956 MMD2 (ENSMODG00000000933) RADIL (ENSMODG00000000926) AP5Z1 (ENSMODG00000000891) FOXK1 (ENSMODG00000000866) ENSMODG00000024956 ENSMODG00000046744 ENSMODG00000044972 ENSMODG00000047860 ENSMODG00000000829 ENSMODG00000000796 ENSMODG00000000327 Opossum MODERN SPECIES 5 PSMG3 (ENSMODG00000009027) TMEM184A (ENSMODG00000009023) MAFK (ENSMODG00000047425) ENSMODG00000009003 INTS1 (ENSMODG00000008947) ENSMODG00000008843 ENSMODG00000025494 ENSMODG00000040057 ENSMODG00000008748 ENSMODG00000049348 CYP2W1 (ENSMODG00000008705) ADAP1 (ENSMODG00000008667) GET4 (ENSMODG00000008643) SUN1 (ENSMODG00000008621) DNAAF5 (ENSMODG00000008601) ENSMODG00000008582 ##22 PRKAR1B (ENSMODG00000008572) PDGFA (ENSMODG00000036514) FOXL3 (ENSMODG00000025014) FAM20C (ENSMODG00000008498) TRRAP (ENSMODG00000008449) ENSMODG00000028886 NPTX2 (ENSMODG00000008390) ##35 ENSMODG00000008380 BAIAP2L1 (ENSMODG00000008375) ##31 BRI3 (ENSMODG00000041144) TECPR1 (ENSMODG00000008338) BHLHA15 (ENSMODG00000025044) LMTK2 (ENSMODG00000008276) ENSMODG00000008249 ENSMODG00000008239 Marsupialia_b ANCESTRAL SPECIES 18 ENSGT00940000160875 ENSGT01030000234586.A.a.b ENSGT00510000046986.a ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300.q ENSGT00390000014300.r ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a.m ENSGT00940000160705.C.b ENSGT00940000158690 ENSGT00940000156819.a.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Tasmanian devil MODERN SPECIES NATD1 (ENSSHAG00000027545) MAP2K3 (ENSSHAG00000014370) ENSSHAG00000021332 ENSSHAG00000024488 CPSF4 (ENSSHAG00000011533) PTCD1 (ENSSHAG00000011376) BUD31 (ENSSHAG00000011349) PDAP1 (ENSSHAG00000028752) ARPC1B (ENSSHAG00000030346) ENSSHAG00000010673 ENSSHAG00000009967 ENSSHAG00000008364 ENSSHAG00000027219 ENSSHAG00000005785 FSCN1 (ENSSHAG00000003565) ##21 ACTB (ENSSHAG00000029431) ##22 FBXL18 (ENSSHAG00000012245) TNRC18 (ENSSHAG00000009526) ENSSHAG00000010855 SLC29A4 (ENSSHAG00000008906) ENSSHAG00000028539 WIPI2 (ENSSHAG00000007266) MMD2 (ENSSHAG00000028375) RADIL (ENSSHAG00000004658) AP5Z1 (ENSSHAG00000004111) ENSSHAG00000022233 ENSSHAG00000008242 ENSSHAG00000021530 ENSSHAG00000028448 SDK1 (ENSSHAG00000007883) CARD11 (ENSSHAG00000013958) Diprotodontia ANCESTRAL SPECIES 14 ENSGT00940000160875 ENSGT01030000234586.A.a.b ENSGT00510000046986.a ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300.q ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a.m ENSGT00950000183183.b.a.n ENSGT00940000160705.C.b ENSGT00940000158690 ENSGT00940000156819.a.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.h.b ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Wallaby MODERN SPECIES 13402 ENSMEUG00000003859 ##22 Diprotodontia_a ANCESTRAL SPECIES 13 ENSGT00940000160875 ENSGT01030000234586.A.a.b ENSGT00510000046986.a.c ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300.q ENSGT00390000018509.a ENSGT00950000183183.b.b ENSGT00950000183183.b.a.m ENSGT00950000183183.b.a.n ENSGT00940000160705.C.b ENSGT00940000158690 ENSGT00940000156819.a.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537.i ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b.h.b ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Common wonbat MODERN SPECIES 1043 ENSVURG00010018034 MAP2K3 (ENSVURG00010018041) ENSVURG00010018055 ENSVURG00010018064 ENSVURG00010018069 PTCD1 (ENSVURG00010018118) BUD31 (ENSVURG00010018125) PDAP1 (ENSVURG00010018142) ARPC1B (ENSVURG00010018155) ARPC1A (ENSVURG00010018169) ENSVURG00010018191 SMURF1 (ENSVURG00010018224) ENSVURG00010018242 RNF216 (ENSVURG00010018252) FSCN1 (ENSVURG00010018267) ##21 ACTB (ENSVURG00010018277) ##22 FBXL18 (ENSVURG00010018291) TNRC18 (ENSVURG00010018350) SLC29A4 (ENSVURG00010018431) WIPI2 (ENSVURG00010018474) MMD2 (ENSVURG00010018492) RADIL (ENSVURG00010018523) AP5Z1 (ENSVURG00010018537) FOXK1 (ENSVURG00010018549) ENSVURG00010018557 ENSVURG00010018562 ENSVURG00010018565 ENSVURG00010018571 ENSVURG00010018585 ENSVURG00010018591 ENSVURG00010018605 koala DUPLICATION koala MODERN SPECIES 130 TMEM11 (ENSPCIG00000001231) ENSPCIG00000001219 MAP2K3 (ENSPCIG00000001188) ENSPCIG00000024773 ENSPCIG00000024775 CPSF4 (ENSPCIG00000024776) PTCD1 (ENSPCIG00000024778) ENSPCIG00000024779 PDAP1 (ENSPCIG00000024781) ARPC1B (ENSPCIG00000024786) ARPC1A (ENSPCIG00000024794) SMURF1 (ENSPCIG00000019659) ENSPCIG00000019658 RNF216 (ENSPCIG00000032734) FSCN1 (ENSPCIG00000015239) ##21 ACTB (ENSPCIG00000015244) ##22 FBXL18 (ENSPCIG00000015253) SLC29A4 (ENSPCIG00000029062) ENSPCIG00000017383 MMD2 (ENSPCIG00000017376) RADIL (ENSPCIG00000017375) AP5Z1 (ENSPCIG00000017374) FOXK1 (ENSPCIG00000017373) koala MODERN SPECIES 13 ASCL1 (ENSPCIG00000009761) PAH (ENSPCIG00000009760) ENSPCIG00000009759 IGF1 (ENSPCIG00000009756) PMCH (ENSPCIG00000037018) PARPBP (ENSPCIG00000027305) NUP37 (ENSPCIG00000009752) ENSPCIG00000009749 DRAM1 (ENSPCIG00000009746) GNPTAB (ENSPCIG00000009742) CHPT1 (ENSPCIG00000009695) MYBPC1 (ENSPCIG00000026251) SPIC (ENSPCIG00000033679) ENSPCIG00000009683 UTP20 (ENSPCIG00000009298) ENSPCIG00000036133 ##22 ENSPCIG00000009029 ENSPCIG00000009014 ENSPCIG00000009010 ENSPCIG00000009002 ANO4 (ENSPCIG00000008989) GAS2L3 (ENSPCIG00000010848) NR1H4 (ENSPCIG00000010847) SLC17A8 (ENSPCIG00000031571) SCYL2 (ENSPCIG00000021110) koala MODERN SPECIES 156 NDUFB9 (ENSPCIG00000025024) TATDN1 (ENSPCIG00000025022) RNF139 (ENSPCIG00000025020) TMEM65 (ENSPCIG00000025017) FER1L6 (ENSPCIG00000018183) FAM91A1 (ENSPCIG00000014043) ANXA13 (ENSPCIG00000014033) KLHL38 (ENSPCIG00000014021) FBXO32 (ENSPCIG00000014014) NTAQ1 (ENSPCIG00000014010) ATAD2 (ENSPCIG00000013943) ZHX1 (ENSPCIG00000013933) C8orf76 (ENSPCIG00000013930) FAM83A (ENSPCIG00000013926) TBC1D31 (ENSPCIG00000013915) ENSPCIG00000032976 ##22 DERL1 (ENSPCIG00000020299) ZHX2 (ENSPCIG00000020296) HAS2 (ENSPCIG00000016493) ENSPCIG00000016492 ENSPCIG00000013546 SNTB1 (ENSPCIG00000015033) MTBP (ENSPCIG00000019484) MRPL13 (ENSPCIG00000019489) COL14A1 (ENSPCIG00000019503) koala MODERN SPECIES 35 PDE2A (ENSPCIG00000010517) ARAP1 (ENSPCIG00000010521) STARD10 (ENSPCIG00000010527) ENSPCIG00000010530 ATG16L2 (ENSPCIG00000010532) FCHSD2 (ENSPCIG00000010537) P2RY2 (ENSPCIG00000021793) ARHGEF17 (ENSPCIG00000021796) RELT (ENSPCIG00000021800) FAM168A (ENSPCIG00000021803) ENSPCIG00000021809 RAB6A (ENSPCIG00000021810) MRPL48 (ENSPCIG00000021813) COA4 (ENSPCIG00000021814) PAAF1 (ENSPCIG00000021816) ENSPCIG00000033407 ##22 DNAJB13 (ENSPCIG00000021818) ENSPCIG00000021820 UCP3 (ENSPCIG00000021821) C2CD3 (ENSPCIG00000021823) PPME1 (ENSPCIG00000021824) P4HA3 (ENSPCIG00000021825) PGM2L1 (ENSPCIG00000021827) KCNE3 (ENSPCIG00000021830) LIPT2 (ENSPCIG00000021831) ENSPCIG00000021832 CHRDL2 (ENSPCIG00000021833) ENSPCIG00000021835 SPCS2 (ENSPCIG00000021840) NEU3 (ENSPCIG00000021841) ENSPCIG00000021843 Eutheria ANCESTRAL SPECIES 22 ENSGT00390000014156 ENSGT00390000014547.c ENSGT00960000187139 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.A ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00950000182958.a.b.b ENSGT00950000182958.a.b.a ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 Boreoeutheria ANCESTRAL SPECIES 12 ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Euarchontoglires ANCESTRAL SPECIES 12 ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Euarchontoglires_A ANCESTRAL SPECIES 12 ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Tree shrew MODERN SPECIES 9180 ENSTBEG00000010781 ##22 Glires ANCESTRAL SPECIES 11 ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000164307 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Rodentia DUPLICATION Rodentia DUPLICATION Rodentia DUPLICATION Rodentia ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.a.a ##22 Rodentia_B ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.a.a ##22 Myomorpha ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.a.a ##22 Muroidea ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.a.a ##22 Upper Galilee mountains blind mole rat MODERN SPECIES 1152 Hibadh (ENSNGAG00000011196) Evx1 (ENSNGAG00000001633) Hoxa13 (ENSNGAG00000024186) Hoxa11 (ENSNGAG00000023780) ENSNGAG00000013764 ENSNGAG00000017228 Hoxa9 (ENSNGAG00000016754) Hoxa7 (ENSNGAG00000021697) Hoxa6 (ENSNGAG00000012897) Hoxa5 (ENSNGAG00000023140) Hoxa4 (ENSNGAG00000022510) Hoxa3 (ENSNGAG00000016765) Hoxa2 (ENSNGAG00000014874) Hoxa1 (ENSNGAG00000021363) Skap2 (ENSNGAG00000016991) ENSNGAG00000010519 ##22 Snx10 (ENSNGAG00000006392) ENSNGAG00000024194 Hnrnpa2b1 (ENSNGAG00000015156) Nfe2l3 (ENSNGAG00000023028) Npvf (ENSNGAG00000023484) 4921507P07Rik (ENSNGAG00000022528) ENSNGAG00000013657 ENSNGAG00000003815 ENSNGAG00000024141 ENSNGAG00000024064 Pals2 (ENSNGAG00000024039) Npy (ENSNGAG00000009749) ENSNGAG00000008884 Stk31 (ENSNGAG00000024195) Fam221a (ENSNGAG00000022352) Rodentia_A ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.a.a ##22 Sciuridae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.a.a ##22 Marmotini ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.a.a ##22 Marmotini_b ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.a.a ##22 Arctic ground squirrel MODERN SPECIES 352 ENSUPAG00010011008 KDELR2 (ENSUPAG00010011015) GRID2IP (ENSUPAG00010011026) ZDHHC4 (ENSUPAG00010011113) INTS15 (ENSUPAG00010011121) ZNF853 (ENSUPAG00010011127) ZNF316 (ENSUPAG00010011132) ENSUPAG00010011142 ZNF12 (ENSUPAG00010011271) ENSUPAG00010011282 RBAK (ENSUPAG00010011305) ENSUPAG00010011311 RNF216 (ENSUPAG00010011321) FSCN1 (ENSUPAG00010011357) ##21 ENSUPAG00010011369 ##22 FBXL18 (ENSUPAG00010011378) TNRC18 (ENSUPAG00010011390) SLC29A4 (ENSUPAG00010011500) WIPI2 (ENSUPAG00010011514) MMD2 (ENSUPAG00010011575) RADIL (ENSUPAG00010011588) ENSUPAG00010011624 AP5Z1 (ENSUPAG00010011633) FOXK1 (ENSUPAG00010011657) SDK1 (ENSUPAG00010011682) Rodentia ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.a.b ##22 Rodentia_B ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.a.b ##22 Myomorpha ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.a.b ##22 Muroidea ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.a.b ##22 Muroidea_A ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.a.b ##22 Murinae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.a.b ##22 Mus ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.a.b ##22 Mus_A ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.a.b ##22 Mus_B ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.a.b ##22 Mus_C ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.a.b ##22 spretus MODERN SPECIES 2 Ppp1r27 (MGP_SPRETEiJ_G0018370) #10 Mcrip1 (MGP_SPRETEiJ_G0018369) Gcgr (MGP_SPRETEiJ_G0018368) Slc25a10 (MGP_SPRETEiJ_G0018367) #11 Mrpl12 (MGP_SPRETEiJ_G0018366) #12 Hgs (MGP_SPRETEiJ_G0018365) #13 Arl16 (MGP_SPRETEiJ_G0018364) #14 Ccdc137 (MGP_SPRETEiJ_G0018363) #15 Oxld1 (MGP_SPRETEiJ_G0018362) #16 Pde6g (MGP_SPRETEiJ_G0018361) #17 Tspan10 (MGP_SPRETEiJ_G0018360) #18 Nploc4 (MGP_SPRETEiJ_G0018359) #19 Faap100 (MGP_SPRETEiJ_G0018358) #20 Fscn2 (MGP_SPRETEiJ_G0018357) #21 MGP_SPRETEiJ_G0018356 MGP_SPRETEiJ_G0018355 ##22 Bahcc1 (MGP_SPRETEiJ_G0018354) #23 Slc38a10 (MGP_SPRETEiJ_G0018353) #25 Ndufaf8 (MGP_SPRETEiJ_G0018352) #26 Tepsin (MGP_SPRETEiJ_G0018351) #27 Cep131 (MGP_SPRETEiJ_G0018350) #28 Aatk (MGP_SPRETEiJ_G0018349) #30 Baiap2 (MGP_SPRETEiJ_G0018348) #31 Chmp6 (MGP_SPRETEiJ_G0018347) #32 Rptor (MGP_SPRETEiJ_G0018346) #33 Nptx1 (MGP_SPRETEiJ_G0018345) #35 Endov (MGP_SPRETEiJ_G0018344) Rnf213 (MGP_SPRETEiJ_G0018343) Slc26a11 (MGP_SPRETEiJ_G0018342) Sgsh (MGP_SPRETEiJ_G0018341) Card14 (MGP_SPRETEiJ_G0018340) Rodentia_A ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.a.b ##22 Hystricomorpha ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.a.b ##22 Hystricomorpha_a ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.a.b ##22 Hystricomorpha_b ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.a.b ##22 Degu MODERN SPECIES 153 PPP1R27 (ENSODEG00000010740) #10 MCRIP1 (ENSODEG00000007940) GCGR (ENSODEG00000008460) ENSODEG00000008220 SLC25A10 (ENSODEG00000008541) #11 MRPL12 (ENSODEG00000008765) #12 HGS (ENSODEG00000007976) #13 ARL16 (ENSODEG00000008186) #14 CCDC137 (ENSODEG00000009523) #15 OXLD1 (ENSODEG00000009077) #16 PDE6G (ENSODEG00000009291) #17 TSPAN10 (ENSODEG00000009598) #18 NPLOC4 (ENSODEG00000008315) #19 ENSODEG00000008214 #20 FSCN2 (ENSODEG00000008403) #21 ENSODEG00000008412 ##22 BAHCC1 (ENSODEG00000009968) #23 ENSODEG00000009081 #25 NDUFAF8 (ENSODEG00000009889) #26 TEPSIN (ENSODEG00000008543) #27 CEP131 (ENSODEG00000009483) #28 AATK (ENSODEG00000010178) #30 BAIAP2 (ENSODEG00000008600) #31 ENSODEG00000010293 RPTOR (ENSODEG00000010789) #33 ENSODEG00000019747 NPTX1 (ENSODEG00000008962) #35 ENDOV (ENSODEG00000009857) ENSODEG00000009991 ENSODEG00000019837 SLC26A11 (ENSODEG00000009075) Sciuridae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.a.b ##22 Marmotini ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.a.b ##22 Marmotini_b ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.a.b ##22 Arctic ground squirrel MODERN SPECIES 470 ARHGDIA (ENSUPAG00010000396) #8 P4HB (ENSUPAG00010000365) #9 PPP1R27 (ENSUPAG00010000343) #10 MCRIP1 (ENSUPAG00010000327) SLC25A10 (ENSUPAG00010000161) #11 MRPL12 (ENSUPAG00010000143) #12 HGS (ENSUPAG00010000083) #13 ARL16 (ENSUPAG00010000027) #14 CCDC137 (ENSUPAG00010019712) #15 OXLD1 (ENSUPAG00010019709) #16 PDE6G (ENSUPAG00010019703) #17 TSPAN10 (ENSUPAG00010019685) #18 NPLOC4 (ENSUPAG00010019627) #19 FAAP100 (ENSUPAG00010019610) #20 FSCN2 (ENSUPAG00010019602) #21 ENSUPAG00010019594 ##22 BAHCC1 (ENSUPAG00010019471) #23 SLC38A10 (ENSUPAG00010019340) #25 NDUFAF8 (ENSUPAG00010019329) #26 TEPSIN (ENSUPAG00010019321) #27 CEP131 (ENSUPAG00010019258) #28 PVALEF (ENSUPAG00010019247) #29 AATK (ENSUPAG00010019236) #30 ENSUPAG00010019225 BAIAP2 (ENSUPAG00010019202) #31 CHMP6 (ENSUPAG00010019190) #32 RPTOR (ENSUPAG00010017210) #33 Rodentia ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.b ##22 Rodentia_A ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.b ##22 Hystricomorpha ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.b ##22 Hystricomorpha_a ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.b ##22 Hystricomorpha_b ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.h.b ##22 Degu MODERN SPECIES 58 VASH2 (ENSODEG00000014165) FLVCR1 (ENSODEG00000013456) SPATA45 (ENSODEG00000014271) TATDN3 (ENSODEG00000013799) NSL1 (ENSODEG00000014696) ENSODEG00000013720 GARIN4 (ENSODEG00000013574) ATF3 (ENSODEG00000013598) NENF (ENSODEG00000016432) PACC1 (ENSODEG00000013328) PPP2R5A (ENSODEG00000014272) DTL (ENSODEG00000016385) INTS7 (ENSODEG00000013809) LPGAT1 (ENSODEG00000013429) ENSODEG00000014021 ENSODEG00000013939 ##22 SLC30A1 (ENSODEG00000014581) PSEN2 (ENSODEG00000013898) PLD5 (ENSODEG00000013817) ENSODEG00000014152 ENSODEG00000014979 ENSODEG00000013620 ENSODEG00000016144 ENSODEG00000014847 SDCCAG8 (ENSODEG00000013437) ENSODEG00000013767 AKT3 (ENSODEG00000013255) ZBTB18 (ENSODEG00000014080) C1orf100 (ENSODEG00000012902) ADSS2 (ENSODEG00000015411) ENSODEG00000013295 Rodentia ANCESTRAL SPECIES 11 ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb.i ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000163679 Rodentia_A ANCESTRAL SPECIES 10 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb.i ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Sciuridae ANCESTRAL SPECIES 49 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A.i.b ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb.i ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 9 KDELR2 (ENSSVLG00005024008) GRID2IP (ENSSVLG00005024088) ENSSVLG00005024387 ZDHHC4 (ENSSVLG00005024406) INTS15 (ENSSVLG00005024423) ZNF853 (ENSSVLG00005024451) ENSSVLG00005024464 ENSSVLG00005024489 ENSSVLG00005024527 RBAK (ENSSVLG00005024552) ENSSVLG00005024561 ENSSVLG00005024568 ENSSVLG00005024575 ENSSVLG00005024604 FSCN1 (ENSSVLG00005024706) ##21 ACTB (ENSSVLG00005024720) ##22 FBXL18 (ENSSVLG00005024737) TNRC18 (ENSSVLG00005024777) SLC29A4 (ENSSVLG00005024899) WIPI2 (ENSSVLG00005017246) MMD2 (ENSSVLG00005017856) RADIL (ENSSVLG00005017983) ENSSVLG00005018177 AP5Z1 (ENSSVLG00005018224) FOXK1 (ENSSVLG00005018254) SDK1 (ENSSVLG00005018436) CARD11 (ENSSVLG00005019511) GNA12 (ENSSVLG00005019630) DAGLB (ENSSVLG00005019691) ENSSVLG00005019810 ENSSVLG00005019953 Eurasian red squirrel MODERN SPECIES 14 IL22 (ENSSVLG00005013922) IL26 (ENSSVLG00005013845) IFNG (ENSSVLG00005013763) DYRK2 (ENSSVLG00005013718) CAND1 (ENSSVLG00005013596) ENSSVLG00005013442 GRIP1 (ENSSVLG00005013349) HELB (ENSSVLG00005012893) IRAK3 (ENSSVLG00005012607) TMBIM4 (ENSSVLG00005012512) ENSSVLG00005012465 HMGA2 (ENSSVLG00005012191) MSRB3 (ENSSVLG00005012047) LEMD3 (ENSSVLG00005011973) WIF1 (ENSSVLG00005011932) ENSSVLG00005011893 ##22 TBC1D30 (ENSSVLG00005011647) ENSSVLG00005011581 GNS (ENSSVLG00005011208) RASSF3 (ENSSVLG00005011138) TBK1 (ENSSVLG00005011016) XPOT (ENSSVLG00005010925) C12orf56 (ENSSVLG00005020067) KICS2 (ENSSVLG00005019971) ENSSVLG00005019929 SRGAP1 (ENSSVLG00005019853) RXYLT1 (ENSSVLG00005019761) ENSSVLG00005019644 PPM1H (ENSSVLG00005019542) ENSSVLG00005019352 MON2 (ENSSVLG00005017702) Marmotini ANCESTRAL SPECIES 70 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A.i.b ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb.i ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Marmotini_b ANCESTRAL SPECIES 176 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A.i.b ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb.i ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 Arctic ground squirrel MODERN SPECIES 1349 ENSUPAG00010008642 ##22 Squirrel MODERN SPECIES 365 KDELR2 (ENSSTOG00000006820) GRID2IP (ENSSTOG00000028699) ZDHHC4 (ENSSTOG00000011605) INTS15 (ENSSTOG00000011614) ZNF853 (ENSSTOG00000019895) ZNF316 (ENSSTOG00000027773) ZNF12 (ENSSTOG00000022132) ENSSTOG00000000412 ENSSTOG00000020799 RBAK (ENSSTOG00000031749) ENSSTOG00000030067 ENSSTOG00000022953 RNF216 (ENSSTOG00000004045) FSCN1 (ENSSTOG00000020923) ##21 ACTB (ENSSTOG00000014797) ##22 FBXL18 (ENSSTOG00000028236) TNRC18 (ENSSTOG00000026995) SLC29A4 (ENSSTOG00000001393) WIPI2 (ENSSTOG00000001382) MMD2 (ENSSTOG00000023967) RADIL (ENSSTOG00000000578) AP5Z1 (ENSSTOG00000027215) FOXK1 (ENSSTOG00000000564) SDK1 (ENSSTOG00000002001) Alpin marmot DUPLICATION Alpin marmot MODERN SPECIES 77 ENSMMMG00000008099 KDELR2 (ENSMMMG00000008094) GRID2IP (ENSMMMG00000007901) ZDHHC4 (ENSMMMG00000007874) INTS15 (ENSMMMG00000007856) ZNF853 (ENSMMMG00000007842) ZNF316 (ENSMMMG00000007819) ENSMMMG00000007783 ZNF12 (ENSMMMG00000007770) ENSMMMG00000007683 RBAK (ENSMMMG00000007655) ENSMMMG00000007646 ENSMMMG00000007638 ENSMMMG00000007625 RNF216 (ENSMMMG00000007582) ACTB (ENSMMMG00000007553) ##22 FBXL18 (ENSMMMG00000007533) TNRC18 (ENSMMMG00000007352) SLC29A4 (ENSMMMG00000007333) WIPI2 (ENSMMMG00000007313) MMD2 (ENSMMMG00000007303) PAPOLB (ENSMMMG00000007296) RADIL (ENSMMMG00000007258) AP5Z1 (ENSMMMG00000007212) FOXK1 (ENSMMMG00000007197) SDK1 (ENSMMMG00000007072) CARD11 (ENSMMMG00000007041) GNA12 (ENSMMMG00000007029) ENSMMMG00000007019 DAGLB (ENSMMMG00000006987) RAC1 (ENSMMMG00000006966) Alpin marmot MODERN SPECIES 14 ENSMMMG00000005759 ENSMMMG00000005786 HERC5 (ENSMMMG00000005800) PYURF (ENSMMMG00000006108) HERC3 (ENSMMMG00000006117) NAP1L5 (ENSMMMG00000006213) ENSMMMG00000006245 ENSMMMG00000006296 TIGD2 (ENSMMMG00000006308) GPRIN3 (ENSMMMG00000006319) SNCA (ENSMMMG00000006332) MMRN1 (ENSMMMG00000006343) CCSER1 (ENSMMMG00000006370) ENSMMMG00000006400 GRID2 (ENSMMMG00000006442) ENSMMMG00000006489 ##22 ATOH1 (ENSMMMG00000006500) SMARCAD1 (ENSMMMG00000006528) ENSMMMG00000006570 HPGDS (ENSMMMG00000006575) PDLIM5 (ENSMMMG00000006599) BMPR1B (ENSMMMG00000007282) UNC5C (ENSMMMG00000007320) ENSMMMG00000007448 STPG2 (ENSMMMG00000007520) RAP1GDS1 (ENSMMMG00000007591) TSPAN5 (ENSMMMG00000007766) EIF4E (ENSMMMG00000007798) ADH5 (ENSMMMG00000007886) ADH4 (ENSMMMG00000008175) ADH6 (ENSMMMG00000008181) Alpin marmot MODERN SPECIES 95 PHYHIPL (ENSMMMG00000002443) FAM13C (ENSMMMG00000002458) SLC16A9 (ENSMMMG00000002517) MRLN (ENSMMMG00000002537) ENSMMMG00000002558 CCDC6 (ENSMMMG00000002575) ENSMMMG00000002695 CDK1 (ENSMMMG00000005249) RHOBTB1 (ENSMMMG00000005271) TMEM26 (ENSMMMG00000005375) ENSMMMG00000005379 CABCOCO1 (ENSMMMG00000005397) ARID5B (ENSMMMG00000005413) RTKN2 (ENSMMMG00000005449) ZNF365 (ENSMMMG00000005510) ENSMMMG00000005524 ##22 ADO (ENSMMMG00000005533) EGR2 (ENSMMMG00000005536) ENSMMMG00000005560 NRBF2 (ENSMMMG00000005568) JMJD1C (ENSMMMG00000005576) Hystricomorpha ANCESTRAL SPECIES 17 ENSGT00940000160222 ENSGT00390000015743 ENSGT00940000160044 ENSGT00940000153861.a ENSGT00390000000324 ENSGT00940000161391 ENSGT00390000001316 ENSGT00730000111241 ENSGT00390000000341 ENSGT00460000041594 ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb.i ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000163679 Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES INTS1 (ENSHGLG00000015162) MAFK (ENSHGLG00000044774) TMEM184A (ENSHGLG00000018951) PSMG3 (ENSHGLG00000050465) ELFN1 (ENSHGLG00000013940) MAD1L1 (ENSHGLG00000018905) FTSJ2 (ENSHGLG00000011288) NUDT1 (ENSHGLG00000045244) ENSHGLG00000008199 ENSHGLG00000048377 ENSHGLG00000015822 RNF216 (ENSHGLG00000012663) ENSHGLG00000018972 FSCN1 (ENSHGLG00000013742) ##21 ENSHGLG00000050243 ACTB (ENSHGLG00000009651) ##22 FBXL18 (ENSHGLG00000043138) SLC29A4 (ENSHGLG00000009672) WIPI2 (ENSHGLG00000006000) RADIL (ENSHGLG00000011063) AP5Z1 (ENSHGLG00000008267) FOXK1 (ENSHGLG00000015239) ENSHGLG00000033614 SDK1 (ENSHGLG00000014065) ENSHGLG00000034557 ENSHGLG00000039944 ENSHGLG00000004410 CARD11 (ENSHGLG00000015282) ENSHGLG00000048866 ENSHGLG00000049176 ENSHGLG00000039300 Naked mole-rat female MODERN SPECIES 12 ITGAE (ENSHGLG00000014496) HASPIN (ENSHGLG00000039013) P2RX5 (ENSHGLG00000012071) EMC6 (ENSHGLG00000037919) TAX1BP3 (ENSHGLG00000015618) CTNS (ENSHGLG00000011149) SHPK (ENSHGLG00000031862) TRPV1 (ENSHGLG00000011943) TRPV3 (ENSHGLG00000009350) ENSHGLG00000007032 SPATA22 (ENSHGLG00000011576) ENSHGLG00000034769 ENSHGLG00000044906 ENSHGLG00000047406 ENSHGLG00000048965 ENSHGLG00000018649 ##22 ENSHGLG00000041642 ENSHGLG00000035925 ENSHGLG00000050013 ENSHGLG00000020720 ENSHGLG00000048875 ENSHGLG00000036070 ENSHGLG00000042762 ENSHGLG00000045843 ENSHGLG00000043286 ENSHGLG00000042223 ENSHGLG00000041211 ENSHGLG00000043166 ENSHGLG00000032775 ENSHGLG00000011959 ENSHGLG00000011388 Hystricomorpha_a ANCESTRAL SPECIES 16 ENSGT00940000160222 ENSGT00390000015743 ENSGT00940000160044 ENSGT00940000153861.a ENSGT00390000000324 ENSGT00940000161391 ENSGT00390000001316 ENSGT00730000111241 ENSGT00390000000341 ENSGT00460000041594 ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00940000154173.A ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb.i ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000163679 Guinea pig MODERN SPECIES 30 MAFK (ENSCPOG00000037640) TMEM184A (ENSCPOG00000019672) PSMG3 (ENSCPOG00000031079) ELFN1 (ENSCPOG00000033969) MAD1L1 (ENSCPOG00000002556) MRM2 (ENSCPOG00000020743) NUDT1 (ENSCPOG00000014567) SNX8 (ENSCPOG00000014569) ENSCPOG00000037067 ENSCPOG00000024956 RBAK (ENSCPOG00000009230) ENSCPOG00000021697 ENSCPOG00000019998 RNF216 (ENSCPOG00000004858) FSCN1 (ENSCPOG00000008011) ##21 ACTB (ENSCPOG00000013467) ##22 FBXL18 (ENSCPOG00000009042) TNRC18 (ENSCPOG00000034730) SLC29A4 (ENSCPOG00000020448) WIPI2 (ENSCPOG00000004698) ENSCPOG00000034159 ENSCPOG00000012541 ENSCPOG00000009838 ENSCPOG00000036310 BRAT1 (ENSCPOG00000002849) AMZ1 (ENSCPOG00000008433) GNA12 (ENSCPOG00000001774) CARD11 (ENSCPOG00000003908) SDK1 (ENSCPOG00000014956) FOXK1 (ENSCPOG00000014118) AP5Z1 (ENSCPOG00000014121) Hystricomorpha_b ANCESTRAL SPECIES 55 ENSGT00940000161420 ENSGT00940000160222 ENSGT00390000015743 ENSGT00940000160044 ENSGT00940000153861.a ENSGT00390000000324 ENSGT00940000161391 ENSGT00390000001316 ENSGT00730000111241 ENSGT00390000000341 ENSGT00460000041594 ENSGT00940000154303.A.b ENSGT00940000154173.A ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb.i ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000163679 Long-tailed chinchilla MODERN SPECIES 167 BRAT1 (ENSCLAG00000006161) ENSCLAG00000008719 AMZ1 (ENSCLAG00000011572) GNA12 (ENSCLAG00000009938) CARD11 (ENSCLAG00000006718) SDK1 (ENSCLAG00000008559) FOXK1 (ENSCLAG00000007995) AP5Z1 (ENSCLAG00000006222) RADIL (ENSCLAG00000005480) MMD2 (ENSCLAG00000004912) PAPOLB (ENSCLAG00000004689) ENSCLAG00000008578 RBAK (ENSCLAG00000010914) RNF216 (ENSCLAG00000009524) FSCN1 (ENSCLAG00000013884) ##21 ACTB (ENSCLAG00000013196) ##22 FBXL18 (ENSCLAG00000008640) TNRC18 (ENSCLAG00000014952) SLC29A4 (ENSCLAG00000012460) WIPI2 (ENSCLAG00000012307) ENSCLAG00000017774 SNX8 (ENSCLAG00000009295) NUDT1 (ENSCLAG00000011039) MAD1L1 (ENSCLAG00000010531) ELFN1 (ENSCLAG00000010408) PSMG3 (ENSCLAG00000010038) TMEM184A (ENSCLAG00000008182) MAFK (ENSCLAG00000007943) INTS1 (ENSCLAG00000005829) MICALL2 (ENSCLAG00000006245) ENSCLAG00000005753 Degu DUPLICATION Degu MODERN SPECIES 121 NECTIN1 (ENSODEG00000006611) ENSODEG00000006811 THY1 (ENSODEG00000008554) ENSODEG00000008794 MFRP (ENSODEG00000007223) C1QTNF5 (ENSODEG00000006895) RNF26 (ENSODEG00000007188) MCAM (ENSODEG00000008067) ENSODEG00000007290 ENSODEG00000007893 CCDC153 (ENSODEG00000008452) NHERF4 (ENSODEG00000007000) NLRX1 (ENSODEG00000007636) ABCG4 (ENSODEG00000008192) HINFP (ENSODEG00000011292) ENSODEG00000007762 ##22 C2CD2L (ENSODEG00000008352) ENSODEG00000010500 ENSODEG00000019651 HMBS (ENSODEG00000009459) VPS11 (ENSODEG00000007999) HYOU1 (ENSODEG00000008854) SLC37A4 (ENSODEG00000008086) ENSODEG00000007434 ENSODEG00000007617 CENATAC (ENSODEG00000009222) ENSODEG00000007420 UPK2 (ENSODEG00000007788) BCL9L (ENSODEG00000008521) CXCR5 (ENSODEG00000009623) ENSODEG00000019472 Degu MODERN SPECIES 93 MALL (ENSODEG00000006386) MAL (ENSODEG00000006405) MRPS5 (ENSODEG00000006937) ZNF2 (ENSODEG00000005837) PROM2 (ENSODEG00000006749) KCNIP3 (ENSODEG00000007993) FAHD2A (ENSODEG00000006155) GPAT2 (ENSODEG00000006540) ASTL (ENSODEG00000006674) DUSP2 (ENSODEG00000006605) STARD7 (ENSODEG00000008185) TMEM127 (ENSODEG00000007316) CIAO1 (ENSODEG00000010429) SNRNP200 (ENSODEG00000008366) ENSODEG00000019261 ENSODEG00000006239 ##22 ENSODEG00000009431 #22 ITPRIPL1 (ENSODEG00000019718) NCAPH (ENSODEG00000007119) NEURL3 (ENSODEG00000006502) ARID5A (ENSODEG00000007125) KANSL3 (ENSODEG00000009383) ENSODEG00000006964 FER1L5 (ENSODEG00000007379) LMAN2L (ENSODEG00000007336) CNNM4 (ENSODEG00000008343) ENSODEG00000007080 ANKRD23 (ENSODEG00000007390) ANKRD39 (ENSODEG00000008651) SEMA4C (ENSODEG00000007356) ENSODEG00000007357 Rodentia_B ANCESTRAL SPECIES 29 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb.i ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000164307 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000163679 Kangaroo rat DUPLICATION Kangaroo rat MODERN SPECIES 387 Cyth3 (ENSDORG00000024524) ENSDORG00000028442 Rac1 (ENSDORG00000014388) Daglb (ENSDORG00000002646) Kdelr2 (ENSDORG00000012464) Grid2ip (ENSDORG00000001187) Zdhhc4 (ENSDORG00000025226) Ints15 (ENSDORG00000015054) ENSDORG00000023712 Zfp316 (ENSDORG00000023753) Zfp12 (ENSDORG00000005742) ENSDORG00000025580 Rbak (ENSDORG00000023872) Rnf216 (ENSDORG00000010835) Fscn1 (ENSDORG00000025729) ##21 Actb (ENSDORG00000010079) ##22 Fbxl18 (ENSDORG00000010081) Tnrc18 (ENSDORG00000029645) Slc29a4 (ENSDORG00000003898) Wipi2 (ENSDORG00000012212) Mmd2 (ENSDORG00000011018) Papolb (ENSDORG00000001140) Radil (ENSDORG00000011014) Ap5z1 (ENSDORG00000011010) Foxk1 (ENSDORG00000011009) Upk3b (ENSDORG00000007552) Sdk1 (ENSDORG00000003865) Card11 (ENSDORG00000005755) Gna12 (ENSDORG00000028435) Amz1 (ENSDORG00000000241) Brat1 (ENSDORG00000000822) Kangaroo rat MODERN SPECIES 482 P4hb (ENSDORG00000011795) #9 Ppp1r27 (ENSDORG00000011794) #10 Mcrip1 (ENSDORG00000026667) Gcgr (ENSDORG00000012245) Slc25a10 (ENSDORG00000008076) #11 Mrpl12 (ENSDORG00000008074) #12 Hgs (ENSDORG00000008072) #13 Arl16 (ENSDORG00000008069) #14 Ccdc137 (ENSDORG00000008068) #15 ENSDORG00000008066 #16 Pde6g (ENSDORG00000023297) #17 Tspan10 (ENSDORG00000008064) #18 Nploc4 (ENSDORG00000010288) #19 ENSDORG00000024388 #20 Fscn2 (ENSDORG00000010286) #21 ENSDORG00000028801 ##22 Bahcc1 (ENSDORG00000015459) #23 Myomorpha ANCESTRAL SPECIES 31 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb.i ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000164307 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000163679 Lesser Egyptian jerboa MODERN SPECIES 203 Rnf216 (ENSJJAG00000018571) Fscn1 (ENSJJAG00000019494) ##21 Actb (ENSJJAG00000018929) ##22 Fbxl18 (ENSJJAG00000019235) Tnrc18 (ENSJJAG00000000131) Slc29a4 (ENSJJAG00000009846) Wipi2 (ENSJJAG00000011852) Mmd2 (ENSJJAG00000013135) Radil (ENSJJAG00000018039) Papolb (ENSJJAG00000012212) Ap5z1 (ENSJJAG00000012710) Foxk1 (ENSJJAG00000013688) Sdk1 (ENSJJAG00000018030) Card11 (ENSJJAG00000023880) Gna12 (ENSJJAG00000018748) Amz1 (ENSJJAG00000019187) Brat1 (ENSJJAG00000019651) Iqce (ENSJJAG00000000506) Muroidea ANCESTRAL SPECIES 51 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb.i ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000164307 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000163679 Muroidea_A ANCESTRAL SPECIES 27 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb.i ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000164307 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000163679 Murinae ANCESTRAL SPECIES 28 ENSGT00960000187139 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb.i ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000164307 ENSGT00940000159293 ENSGT00390000017592 ENSGT00960000191491 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Rat MODERN SPECIES 3 Rac1 (ENSRNOG00000001068) Daglb (ENSRNOG00000001079) Kdelr2 (ENSRNOG00000001083) Grid2ip (ENSRNOG00000030927) Zdhhc4 (ENSRNOG00000051699) Ints15 (ENSRNOG00000024567) Zfp853 (ENSRNOG00000030579) Zfp316 (ENSRNOG00000001094) Zfp12 (ENSRNOG00000006958) Spdye4 (ENSRNOG00000058563) Rbak (ENSRNOG00000001099) AABR07072272.1 (ENSRNOG00000029560) LOC103693627 (ENSRNOG00000024527) Rnf216 (ENSRNOG00000001101) Fscn1 (ENSRNOG00000056585) ##21 Actb (ENSRNOG00000034254) ##22 Fbxl18 (ENSRNOG00000001117) Tnrc18 (ENSRNOG00000024482) Slc29a4 (ENSRNOG00000001115) Wipi2 (ENSRNOG00000001114) Mmd2 (ENSRNOG00000001113) Radil (ENSRNOG00000024456) AABR07035428.2 (ENSRNOG00000056768) AABR07035428.3 (ENSRNOG00000059768) Foxk1 (ENSRNOG00000001104) Sdk1 (ENSRNOG00000001103) ENSRNOG00000069236 Card11 (ENSRNOG00000024277) Gna12 (ENSRNOG00000001235) Amz1 (ENSRNOG00000024264) Brat1 (ENSRNOG00000001236) Mus ANCESTRAL SPECIES 17 ENSGT00390000014156 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb.i ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000164307 ENSGT00940000159293 ENSGT00390000017592 ENSGT00960000191491 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Shrew mouse DUPLICATION Shrew mouse MODERN SPECIES 13 Mrgprh (MGP_PahariEiJ_G0023362) Mas1 (MGP_PahariEiJ_G0023363) Igf2r (MGP_PahariEiJ_G0023364) Slc22a1 (MGP_PahariEiJ_G0023365) Slc22a2 (MGP_PahariEiJ_G0023366) Slc22a3 (MGP_PahariEiJ_G0023367) Plg (MGP_PahariEiJ_G0023368) Map3k4 (MGP_PahariEiJ_G0023369) Agpat4 (MGP_PahariEiJ_G0023370) Prkn (MGP_PahariEiJ_G0023371) Pacrg (MGP_PahariEiJ_G0023372) Qki (MGP_PahariEiJ_G0023373) MGP_PahariEiJ_G0023374 MGP_PahariEiJ_G0023375 Pde10a (MGP_PahariEiJ_G0023376) MGP_PahariEiJ_G0023377 ##22 T (MGP_PahariEiJ_G0023378) MGP_PahariEiJ_G0023379 Prr18 (MGP_PahariEiJ_G0023380) MGP_PahariEiJ_G0023381 MGP_PahariEiJ_G0023382 Ccr6 (MGP_PahariEiJ_G0023383) Cep43 (MGP_PahariEiJ_G0023384) MGP_PahariEiJ_G0023385 MGP_PahariEiJ_G0023386 MGP_PahariEiJ_G0023387 MGP_PahariEiJ_G0023388 Rps6ka2 (MGP_PahariEiJ_G0023389) Gpr31b (MGP_PahariEiJ_G0023390) MGP_PahariEiJ_G0023391 MGP_PahariEiJ_G0023392 Shrew mouse MODERN SPECIES 15 MGP_PahariEiJ_G0024555 Rac1 (MGP_PahariEiJ_G0024554) Daglb (MGP_PahariEiJ_G0024553) Kdelr2 (MGP_PahariEiJ_G0024552) Grid2ip (MGP_PahariEiJ_G0024551) Zdhhc4 (MGP_PahariEiJ_G0024550) Ints15 (MGP_PahariEiJ_G0024549) MGP_PahariEiJ_G0024548 Zfp316 (MGP_PahariEiJ_G0024547) Zfp12 (MGP_PahariEiJ_G0024546) MGP_PahariEiJ_G0024545 MGP_PahariEiJ_G0024544 Rbak (MGP_PahariEiJ_G0024543) Rnf216 (MGP_PahariEiJ_G0024542) Fscn1 (MGP_PahariEiJ_G0024541) ##21 MGP_PahariEiJ_G0024540 ##22 Fbxl18 (MGP_PahariEiJ_G0024539) Tnrc18 (MGP_PahariEiJ_G0024538) Slc29a4 (MGP_PahariEiJ_G0024537) Wipi2 (MGP_PahariEiJ_G0024536) Mmd2 (MGP_PahariEiJ_G0024535) Papolb (MGP_PahariEiJ_G0024534) Radil (MGP_PahariEiJ_G0024533) Ap5z1 (MGP_PahariEiJ_G0024532) Foxk1 (MGP_PahariEiJ_G0024531) Sdk1 (MGP_PahariEiJ_G0024530) Card11 (MGP_PahariEiJ_G0024529) Gna12 (MGP_PahariEiJ_G0024528) Amz1 (MGP_PahariEiJ_G0024527) Brat1 (MGP_PahariEiJ_G0024526) Iqce (MGP_PahariEiJ_G0024525) Mus_A ANCESTRAL SPECIES 6 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A.q.a ENSGT00940000154173.A.r ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb.i ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000164307 ENSGT00940000159293 ENSGT00390000017592 ENSGT00960000191491 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Mus_B ANCESTRAL SPECIES 4 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A.q.a ENSGT00940000154173.A.r ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb.i ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000164307 ENSGT00940000159293 ENSGT00390000017592 ENSGT00960000191491 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Mouse MODERN SPECIES 14 Rac1 (ENSMUSG00000001847) Daglb (ENSMUSG00000039206) Kdelr2 (ENSMUSG00000079111) Grid2ip (ENSMUSG00000010825) Zdhhc4 (ENSMUSG00000001844) Ints15 (ENSMUSG00000039244) Zfp853 (ENSMUSG00000093910) Zfp316 (ENSMUSG00000046658) Zfp12 (ENSMUSG00000029587) Spdye4a (ENSMUSG00000039296) Spdye4b (ENSMUSG00000029586) Rbak (ENSMUSG00000061898) Or10ah1-ps1 (ENSMUSG00000090981) Rnf216 (ENSMUSG00000045078) Fscn1 (ENSMUSG00000029581) ##21 Actb (ENSMUSG00000029580) ##22 Fbxl18 (ENSMUSG00000066640) Tnrc18 (ENSMUSG00000039477) Slc29a4 (ENSMUSG00000050822) Wipi2 (ENSMUSG00000029578) Mmd2 (ENSMUSG00000039533) Papolb (ENSMUSG00000074817) Radil (ENSMUSG00000029576) Ap5z1 (ENSMUSG00000039623) Foxk1 (ENSMUSG00000056493) Sdk1 (ENSMUSG00000039683) Card11 (ENSMUSG00000036526) Gna12 (ENSMUSG00000000149) Amz1 (ENSMUSG00000050022) Brat1 (ENSMUSG00000000148) Iqce (ENSMUSG00000036555) Mus_C ANCESTRAL SPECIES 4 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A.q.a ENSGT00940000154173.A.r ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb.i ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000164307 ENSGT00940000159293 ENSGT00390000017592 ENSGT00960000191491 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 spretus DUPLICATION spretus MODERN SPECIES 14 MGP_SPRETEiJ_G0028987 Rac1 (MGP_SPRETEiJ_G0028986) Daglb (MGP_SPRETEiJ_G0028985) Kdelr2 (MGP_SPRETEiJ_G0028984) Grid2ip (MGP_SPRETEiJ_G0028983) Zdhhc4 (MGP_SPRETEiJ_G0028982) Ints15 (MGP_SPRETEiJ_G0028981) MGP_SPRETEiJ_G0028980 Zfp316 (MGP_SPRETEiJ_G0028979) Zfp12 (MGP_SPRETEiJ_G0028978) Spdye4a (MGP_SPRETEiJ_G0028977) MGP_SPRETEiJ_G0028976 Rbak (MGP_SPRETEiJ_G0028975) Rnf216 (MGP_SPRETEiJ_G0028974) Fscn1 (MGP_SPRETEiJ_G0028973) ##21 MGP_SPRETEiJ_G0028972 ##22 Fbxl18 (MGP_SPRETEiJ_G0028971) Tnrc18 (MGP_SPRETEiJ_G0028970) Slc29a4 (MGP_SPRETEiJ_G0028969) Wipi2 (MGP_SPRETEiJ_G0028968) Mmd2 (MGP_SPRETEiJ_G0028967) Papolb (MGP_SPRETEiJ_G0028966) Radil (MGP_SPRETEiJ_G0028965) Ap5z1 (MGP_SPRETEiJ_G0028964) Foxk1 (MGP_SPRETEiJ_G0028963) Sdk1 (MGP_SPRETEiJ_G0028962) Card11 (MGP_SPRETEiJ_G0028961) Gna12 (MGP_SPRETEiJ_G0028960) Amz1 (MGP_SPRETEiJ_G0028959) Brat1 (MGP_SPRETEiJ_G0028958) Iqce (MGP_SPRETEiJ_G0028957) spretus MODERN SPECIES 8 Pnldc1 (MGP_SPRETEiJ_G0021975) Mrgprh (MGP_SPRETEiJ_G0021974) Mas1 (MGP_SPRETEiJ_G0021973) Igf2r (MGP_SPRETEiJ_G0021972) Slc22a1 (MGP_SPRETEiJ_G0021971) Slc22a2 (MGP_SPRETEiJ_G0021970) Slc22a3 (MGP_SPRETEiJ_G0021969) Plg (MGP_SPRETEiJ_G0021968) Map3k4 (MGP_SPRETEiJ_G0021967) Agpat4 (MGP_SPRETEiJ_G0021966) Prkn (MGP_SPRETEiJ_G0021965) Pacrg (MGP_SPRETEiJ_G0021964) Qki (MGP_SPRETEiJ_G0021963) Pabpc6 (MGP_SPRETEiJ_G0021962) Gm17728 (MGP_SPRETEiJ_G0021961) MGP_SPRETEiJ_G0021960 ##22 MGP_SPRETEiJ_G0021959 T (MGP_SPRETEiJ_G0021958) Prr18 (MGP_SPRETEiJ_G0021957) MGP_SPRETEiJ_G0021956 Sft2d1 (MGP_SPRETEiJ_G0021955) MGP_SPRETEiJ_G0021954 Ccr6 (MGP_SPRETEiJ_G0021953) Cep43 (MGP_SPRETEiJ_G0021952) MGP_SPRETEiJ_G0021951 MGP_SPRETEiJ_G0021950 MGP_SPRETEiJ_G0021949 MGP_SPRETEiJ_G0021948 Rps6ka2 (MGP_SPRETEiJ_G0021947) Gpr31b (MGP_SPRETEiJ_G0021946) MGP_SPRETEiJ_G0021945 Steppe mouse DUPLICATION Steppe mouse MODERN SPECIES 3370 ENSMSIG00000029415 ENSMSIG00000029417 Daglb (ENSMSIG00000029420) Kdelr2 (ENSMSIG00000029426) Grid2ip (ENSMSIG00000029430) ENSMSIG00000029458 ENSMSIG00000029463 ENSMSIG00000029473 Zfp316 (ENSMSIG00000029479) Zfp12 (ENSMSIG00000029485) ENSMSIG00000029492 Rbak (ENSMSIG00000029498) Or10ah1-ps1 (ENSMSIG00000029500) Rnf216 (ENSMSIG00000029504) Fscn1 (ENSMSIG00000029517) ##21 Actb (ENSMSIG00000029528) ##22 Fbxl18 (ENSMSIG00000029536) Tnrc18 (ENSMSIG00000029541) Slc29a4 (ENSMSIG00000029628) Wipi2 (ENSMSIG00000029635) ENSMSIG00000029641 Mmd2 (ENSMSIG00000029643) Radil (ENSMSIG00000029644) Ap5z1 (ENSMSIG00000029660) ENSMSIG00000029668 Foxk1 (ENSMSIG00000029669) Sdk1 (ENSMSIG00000029675) Card11 (ENSMSIG00000029725) ENSMSIG00000029746 Amz1 (ENSMSIG00000029750) Brat1 (ENSMSIG00000029757) Steppe mouse MODERN SPECIES 3279 Htr1f (ENSMSIG00000021469) ENSMSIG00000021413 ##22 Cggbp1 (ENSMSIG00000021398) Zfp654 (ENSMSIG00000021369) ENSMSIG00000021355 ENSMSIG00000021344 Csnka2ip (ENSMSIG00000021335) Epha3 (ENSMSIG00000021215) Pros1 (ENSMSIG00000021194) Stx19 (ENSMSIG00000021192) Arl13b (ENSMSIG00000021172) ENSMSIG00000021166 Nsun3 (ENSMSIG00000021155) Steppe mouse MODERN SPECIES 2430 ENSMSIG00000031369 Cfap97 (ENSMSIG00000031360) Slc25a4 (ENSMSIG00000031359) ENSMSIG00000031358 ##22 ENSMSIG00000031356 ENSMSIG00000031355 Helt (ENSMSIG00000031354) Ryukyu mouse DUPLICATION Ryukyu mouse MODERN SPECIES 17 Nae1 (MGP_CAROLIEiJ_G0031449) Terb1 (MGP_CAROLIEiJ_G0031448) Dync1li2 (MGP_CAROLIEiJ_G0031447) Cmtm4 (MGP_CAROLIEiJ_G0031446) Cmtm3 (MGP_CAROLIEiJ_G0031445) Cmtm2b (MGP_CAROLIEiJ_G0031444) MGP_CAROLIEiJ_G0031443 MGP_CAROLIEiJ_G0031442 Cklf (MGP_CAROLIEiJ_G0031441) Tk2 (MGP_CAROLIEiJ_G0031440) MGP_CAROLIEiJ_G0031439 Cdh5 (MGP_CAROLIEiJ_G0031438) MGP_CAROLIEiJ_G0031436 Cdh11 (MGP_CAROLIEiJ_G0031435) Cdh8 (MGP_CAROLIEiJ_G0031434) MGP_CAROLIEiJ_G0031433 ##22 MGP_CAROLIEiJ_G0031432 Slc38a7 (MGP_CAROLIEiJ_G0031431) Cnot1 (MGP_CAROLIEiJ_G0031430) Setd6 (MGP_CAROLIEiJ_G0031429) Ndrg4 (MGP_CAROLIEiJ_G0031428) Gins3 (MGP_CAROLIEiJ_G0031427) Prss54 (MGP_CAROLIEiJ_G0031426) Ccdc113 (MGP_CAROLIEiJ_G0031425) Csnk2a2 (MGP_CAROLIEiJ_G0031424) Cfap20 (MGP_CAROLIEiJ_G0031423) Mmp15 (MGP_CAROLIEiJ_G0031422) Usb1 (MGP_CAROLIEiJ_G0031421) Zfp319 (MGP_CAROLIEiJ_G0031420) Tepp (MGP_CAROLIEiJ_G0031419) Cngb1 (MGP_CAROLIEiJ_G0031418) Ryukyu mouse MODERN SPECIES 14 MGP_CAROLIEiJ_G0027983 Rac1 (MGP_CAROLIEiJ_G0027982) Daglb (MGP_CAROLIEiJ_G0027981) Kdelr2 (MGP_CAROLIEiJ_G0027980) Grid2ip (MGP_CAROLIEiJ_G0027979) Zdhhc4 (MGP_CAROLIEiJ_G0027978) Ints15 (MGP_CAROLIEiJ_G0027977) MGP_CAROLIEiJ_G0027976 Zfp316 (MGP_CAROLIEiJ_G0027975) Zfp12 (MGP_CAROLIEiJ_G0027974) Spdye4a (MGP_CAROLIEiJ_G0027973) MGP_CAROLIEiJ_G0027972 Rbak (MGP_CAROLIEiJ_G0027971) Rnf216 (MGP_CAROLIEiJ_G0027970) Fscn1 (MGP_CAROLIEiJ_G0027969) ##21 MGP_CAROLIEiJ_G0027968 ##22 Fbxl18 (MGP_CAROLIEiJ_G0027967) Tnrc18 (MGP_CAROLIEiJ_G0027966) Slc29a4 (MGP_CAROLIEiJ_G0027965) Wipi2 (MGP_CAROLIEiJ_G0027964) Mmd2 (MGP_CAROLIEiJ_G0027963) Papolb (MGP_CAROLIEiJ_G0027962) Radil (MGP_CAROLIEiJ_G0027961) Ap5z1 (MGP_CAROLIEiJ_G0027960) Foxk1 (MGP_CAROLIEiJ_G0027959) Sdk1 (MGP_CAROLIEiJ_G0027958) Card11 (MGP_CAROLIEiJ_G0027957) Gna12 (MGP_CAROLIEiJ_G0027956) Amz1 (MGP_CAROLIEiJ_G0027955) Brat1 (MGP_CAROLIEiJ_G0027954) Iqce (MGP_CAROLIEiJ_G0027953) Cricetidae ANCESTRAL SPECIES 27 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb.i ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592.d ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000163679 ENSGT00950000183060.a.a Cricetidae_B ANCESTRAL SPECIES 46 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb.i ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592.d ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B ENSGT00940000163679 Prairie vole MODERN SPECIES 110 ENSMOCG00000013507 Rac1 (ENSMOCG00000016374) Daglb (ENSMOCG00000000178) Kdelr2 (ENSMOCG00000013926) Grid2ip (ENSMOCG00000016662) Zdhhc4 (ENSMOCG00000015434) Ints15 (ENSMOCG00000007513) Zfp316 (ENSMOCG00000009050) Zfp12 (ENSMOCG00000011472) ENSMOCG00000014198 ENSMOCG00000016394 Rbak (ENSMOCG00000019516) Or10ah1-ps1 (ENSMOCG00000006986) Rnf216 (ENSMOCG00000011081) Fscn1 (ENSMOCG00000001115) ##21 Actb (ENSMOCG00000004137) ##22 Fbxl18 (ENSMOCG00000007883) Tnrc18 (ENSMOCG00000000202) Slc29a4 (ENSMOCG00000020208) Wipi2 (ENSMOCG00000004818) Mmd2 (ENSMOCG00000014153) Radil (ENSMOCG00000003847) Ap5z1 (ENSMOCG00000013579) Foxk1 (ENSMOCG00000005847) Sdk1 (ENSMOCG00000019992) Card11 (ENSMOCG00000012408) Gna12 (ENSMOCG00000010986) Amz1 (ENSMOCG00000011095) Brat1 (ENSMOCG00000022177) ENSMOCG00000011122 Ttyh3 (ENSMOCG00000019470) Northern American deer mouse DUPLICATION Northern American deer mouse MODERN SPECIES 15 Zfp113 (ENSPEMG00000018945) Zscan21 (ENSPEMG00000018646) Zkscan1 (ENSPEMG00000029949) ENSPEMG00000026222 ENSPEMG00000030535 Azgp1 (ENSPEMG00000000368) Gjc3 (ENSPEMG00000014103) ENSPEMG00000027825 ENSPEMG00000027943 ENSPEMG00000025053 ENSPEMG00000014657 ENSPEMG00000024220 Or10ah1-ps1 (ENSPEMG00000004666) Rnf216 (ENSPEMG00000024259) Fscn1 (ENSPEMG00000024060) ##21 Actb (ENSPEMG00000012952) ##22 Fbxl18 (ENSPEMG00000009240) Tnrc18 (ENSPEMG00000010166) Slc29a4 (ENSPEMG00000013403) Wipi2 (ENSPEMG00000023584) Mmd2 (ENSPEMG00000029470) Radil (ENSPEMG00000012299) Ap5z1 (ENSPEMG00000013937) Foxk1 (ENSPEMG00000018098) Sdk1 (ENSPEMG00000021613) Card11 (ENSPEMG00000009509) Gna12 (ENSPEMG00000030767) Amz1 (ENSPEMG00000022718) Brat1 (ENSPEMG00000023595) Iqce (ENSPEMG00000022210) Ttyh3 (ENSPEMG00000022924) Northern American deer mouse DUPLICATION Northern American deer mouse MODERN SPECIES 442 ENSPEMG00000031125 ##22 Northern American deer mouse MODERN SPECIES 14 Galnt14 (ENSPEMG00000024049) Ehd3 (ENSPEMG00000025584) Xdh (ENSPEMG00000018130) Srd5a2 (ENSPEMG00000022591) Memo1 (ENSPEMG00000022750) ENSPEMG00000022018 Spast (ENSPEMG00000023608) Slc30a6 (ENSPEMG00000020929) Nlrc4 (ENSPEMG00000021965) Yipf4 (ENSPEMG00000019265) Birc6 (ENSPEMG00000014766) Ttc27 (ENSPEMG00000000150) Ltbp1 (ENSPEMG00000020317) Rasgrp3 (ENSPEMG00000021501) ENSPEMG00000022251 ENSPEMG00000020378 ##22 Crim1 (ENSPEMG00000015940) ENSPEMG00000028358 ENSPEMG00000016038 Vit (ENSPEMG00000020780) Strn (ENSPEMG00000000282) Heatr5b (ENSPEMG00000020891) Gpatch11 (ENSPEMG00000011862) Eif2ak2 (ENSPEMG00000010269) Sult6b1 (ENSPEMG00000015093) Cebpzos (ENSPEMG00000010914) Cebpz (ENSPEMG00000017978) Ndufaf7 (ENSPEMG00000008296) Prkd3 (ENSPEMG00000010852) Qpct (ENSPEMG00000016415) Cdc42ep3 (ENSPEMG00000028006) Cricetinae ANCESTRAL SPECIES 19 ENSGT00390000014547.c ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb.i ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592.d ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000163679 ENSGT00950000183060.a.a Chinese hamster chok1gshd MODERN SPECIES 130 Rac1 (ENSCGRG00001014453) Daglb (ENSCGRG00001016453) Kdelr2 (ENSCGRG00001012223) Grid2ip (ENSCGRG00001021698) Zdhhc4 (ENSCGRG00001023712) Ints15 (ENSCGRG00001024717) Zfp853 (ENSCGRG00001024977) Zfp316 (ENSCGRG00001003920) Zfp12 (ENSCGRG00001012589) ENSCGRG00001018273 ENSCGRG00001012184 Rbak (ENSCGRG00001014657) Or10ah1-ps1 (ENSCGRG00001001645) Rnf216 (ENSCGRG00001010303) Fscn1 (ENSCGRG00001011181) ##21 Actb (ENSCGRG00001015781) ##22 Fbxl18 (ENSCGRG00001023848) Tnrc18 (ENSCGRG00001006767) Slc29a4 (ENSCGRG00001021874) Wipi2 (ENSCGRG00001022387) Mmd2 (ENSCGRG00001024751) Radil (ENSCGRG00001008101) Ap5z1 (ENSCGRG00001023835) Foxk1 (ENSCGRG00001021719) Sdk1 (ENSCGRG00001001779) Card11 (ENSCGRG00001025022) Gna12 (ENSCGRG00001004659) Amz1 (ENSCGRG00001012211) Brat1 (ENSCGRG00001016792) Iqce (ENSCGRG00001008747) Ttyh3 (ENSCGRG00001023766) Golden Hamster DUPLICATION Golden Hamster MODERN SPECIES 712 ENSMAUG00000004039 Rac1 (ENSMAUG00000017557) Daglb (ENSMAUG00000020489) Kdelr2 (ENSMAUG00000019623) Grid2ip (ENSMAUG00000014248) Zdhhc4 (ENSMAUG00000012510) Ints15 (ENSMAUG00000018145) Zfp853 (ENSMAUG00000016640) Zfp316 (ENSMAUG00000006651) Zfp12 (ENSMAUG00000009697) ENSMAUG00000014029 Rbak (ENSMAUG00000015743) Or10ah1-ps1 (ENSMAUG00000006192) Rnf216 (ENSMAUG00000009736) Fscn1 (ENSMAUG00000021320) ##21 Actb (ENSMAUG00000008763) ##22 Fbxl18 (ENSMAUG00000012173) Tnrc18 (ENSMAUG00000008219) Slc29a4 (ENSMAUG00000014648) Wipi2 (ENSMAUG00000020521) Mmd2 (ENSMAUG00000020302) Radil (ENSMAUG00000006062) Ap5z1 (ENSMAUG00000009664) Foxk1 (ENSMAUG00000013150) Sdk1 (ENSMAUG00000017857) Card11 (ENSMAUG00000018502) Gna12 (ENSMAUG00000007824) Amz1 (ENSMAUG00000019782) Brat1 (ENSMAUG00000016434) Iqce (ENSMAUG00000019981) Ttyh3 (ENSMAUG00000005102) Golden Hamster MODERN SPECIES 637 ENSMAUG00000020552 #7 Arhgdia (ENSMAUG00000008500) #8 P4hb (ENSMAUG00000018291) #9 Ppp1r27 (ENSMAUG00000016632) #10 Mcrip1 (ENSMAUG00000012088) Gcgr (ENSMAUG00000015684) Slc25a10 (ENSMAUG00000007362) #11 Mrpl12 (ENSMAUG00000002006) #12 Hgs (ENSMAUG00000016516) #13 Arl16 (ENSMAUG00000018972) #14 Ccdc137 (ENSMAUG00000004196) #15 Oxld1 (ENSMAUG00000009281) #16 Nploc4 (ENSMAUG00000021902) #19 Faap100 (ENSMAUG00000014683) #20 Fscn2 (ENSMAUG00000009857) #21 ENSMAUG00000001903 ##22 Bahcc1 (ENSMAUG00000018908) #23 Slc38a10 (ENSMAUG00000018952) #25 Ndufaf8 (ENSMAUG00000020884) #26 Tepsin (ENSMAUG00000021822) #27 Cep131 (ENSMAUG00000013433) #28 Aatk (ENSMAUG00000010876) #30 Baiap2 (ENSMAUG00000019072) #31 Chmp6 (ENSMAUG00000010421) #32 Rptor (ENSMAUG00000011027) #33 Nptx1 (ENSMAUG00000007561) #35 Endov (ENSMAUG00000021480) ENSMAUG00000007175 Slc26a11 (ENSMAUG00000010950) Sgsh (ENSMAUG00000022243) Card14 (ENSMAUG00000019695) Upper Galilee mountains blind mole rat DUPLICATION Upper Galilee mountains blind mole rat MODERN SPECIES 1579 ENSNGAG00000010950 Rbak (ENSNGAG00000000256) Or10ah1-ps1 (ENSNGAG00000004996) Rnf216 (ENSNGAG00000005654) Fscn1 (ENSNGAG00000003408) ##21 ENSNGAG00000012568 ##22 Fbxl18 (ENSNGAG00000014197) Tnrc18 (ENSNGAG00000019245) Slc29a4 (ENSNGAG00000017204) Wipi2 (ENSNGAG00000012058) Mmd2 (ENSNGAG00000001256) Radil (ENSNGAG00000011431) Ap5z1 (ENSNGAG00000014450) Foxk1 (ENSNGAG00000018478) Sdk1 (ENSNGAG00000019605) Card11 (ENSNGAG00000016362) Gna12 (ENSNGAG00000016379) Amz1 (ENSNGAG00000020374) Brat1 (ENSNGAG00000019880) ENSNGAG00000010556 Ttyh3 (ENSNGAG00000003713) Upper Galilee mountains blind mole rat MODERN SPECIES 1068 ENSNGAG00000019620 Fbxo34 (ENSNGAG00000016745) Atg14 (ENSNGAG00000021004) Tbpl2 (ENSNGAG00000002908) Ktn1 (ENSNGAG00000014640) ENSNGAG00000003555 Peli2 (ENSNGAG00000011043) Tmem260 (ENSNGAG00000001126) Otx2 (ENSNGAG00000015521) Exoc5 (ENSNGAG00000000258) Ap5m1 (ENSNGAG00000010113) Naa30 (ENSNGAG00000007396) ccdc198 (ENSNGAG00000016223) Slc35f4 (ENSNGAG00000017272) Armh4 (ENSNGAG00000008903) ENSNGAG00000019693 ##22 Actr10 (ENSNGAG00000020352) ENSNGAG00000012537 Arid4a (ENSNGAG00000015701) Timm9 (ENSNGAG00000012518) 2700049A03Rik (ENSNGAG00000018580) ENSNGAG00000008848 Dact1 (ENSNGAG00000016582) Daam1 (ENSNGAG00000011448) Gpr135 (ENSNGAG00000018914) ENSNGAG00000014758 L3hypdh (ENSNGAG00000011558) Jkamp (ENSNGAG00000011860) Ccdc175 (ENSNGAG00000017464) ENSNGAG00000007542 Lrrc9 (ENSNGAG00000000711) Primates ANCESTRAL SPECIES 11 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00910000147936 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Haplorrhini ANCESTRAL SPECIES 26 ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT00510000048032 ENSGT00910000147936 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Simiiformes ANCESTRAL SPECIES 26 ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A.a ENSGT00940000154303.A.b ENSGT00510000048032 ENSGT00910000147936 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Platyrrhini ANCESTRAL SPECIES 19 ENSGT00940000155825 ENSGT00390000014547.c ENSGT00940000153500.a.a.k.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A.a.a ENSGT00940000154303.A.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537.u ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Cebidae ANCESTRAL SPECIES 24 ENSGT00940000155825 ENSGT00390000014547.c ENSGT00940000153500.a.a.k.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A.a.a ENSGT00940000154303.A.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537.u ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Marmoset DUPLICATION Marmoset DUPLICATION Marmoset MODERN SPECIES 13 GABRR3 (ENSCJAG00000008491) RIOX2 (ENSCJAG00000043760) CRYBG3 (ENSCJAG00000008539) ENSCJAG00000083114 ##22 ARL6 (ENSCJAG00000074830) EPHA6 (ENSCJAG00000008553) ENSCJAG00000078682 NSUN3 (ENSCJAG00000008606) ARL13B (ENSCJAG00000008622) STX19 (ENSCJAG00000065164) PROS1 (ENSCJAG00000008648) EPHA3 (ENSCJAG00000008692) ENSCJAG00000058748 ENSCJAG00000067693 C3orf38 (ENSCJAG00000008780) ZNF654 (ENSCJAG00000045391) CGGBP1 (ENSCJAG00000046292) ENSCJAG00000075479 ENSCJAG00000022621 Marmoset MODERN SPECIES 11 USP42 (ENSCJAG00000015403) CYTH3 (ENSCJAG00000046741) ENSCJAG00000084892 RAC1 (ENSCJAG00000015455) DAGLB (ENSCJAG00000015461) KDELR2 (ENSCJAG00000015474) GRID2IP (ENSCJAG00000015493) ZDHHC4 (ENSCJAG00000015517) INTS15 (ENSCJAG00000015531) ZNF316 (ENSCJAG00000046914) ZNF12 (ENSCJAG00000015557) RBAK (ENSCJAG00000021500) ENSCJAG00000087020 RNF216 (ENSCJAG00000000082) FSCN1 (ENSCJAG00000009271) ##21 ENSCJAG00000074750 ##22 FBXL18 (ENSCJAG00000000010) TNRC18 (ENSCJAG00000000014) SLC29A4 (ENSCJAG00000000017) WIPI2 (ENSCJAG00000018164) MMD2 (ENSCJAG00000046225) RADIL (ENSCJAG00000018360) ENSCJAG00000056616 AP5Z1 (ENSCJAG00000018675) FOXK1 (ENSCJAG00000018682) SDK1 (ENSCJAG00000018706) CARD11 (ENSCJAG00000018725) GNA12 (ENSCJAG00000018741) AMZ1 (ENSCJAG00000018761) BRAT1 (ENSCJAG00000018772) IQCE (ENSCJAG00000018776) Marmoset MODERN SPECIES 78 PHKA1 (ENSCJAG00000004244) ENSCJAG00000000229 ENSCJAG00000079778 ENSCJAG00000069950 ENSCJAG00000073913 ENSCJAG00000081881 ENSCJAG00000074437 ENSCJAG00000084463 ENSCJAG00000071801 ENSCJAG00000073630 ENSCJAG00000070896 CDX4 (ENSCJAG00000011367) CHIC1 (ENSCJAG00000016436) ENSCJAG00000044335 ENSCJAG00000067434 ENSCJAG00000079299 ##22 ENSCJAG00000022419 ENSCJAG00000083283 SLC16A2 (ENSCJAG00000080959) ENSCJAG00000075061 ENSCJAG00000075713 RLIM (ENSCJAG00000013235) ENSCJAG00000082004 ENSCJAG00000069682 NEXMIF (ENSCJAG00000000235) ENSCJAG00000073793 ABCB7 (ENSCJAG00000016979) UPRT (ENSCJAG00000017056) ZDHHC15 (ENSCJAG00000017070) ENSCJAG00000080941 MAGEE2 (ENSCJAG00000044553) Marmoset DUPLICATION Marmoset MODERN SPECIES 4 SERPINB7 (ENSCJAG00000033719) SERPINB11 (ENSCJAG00000006731) ENSCJAG00000006825 SERPINB13 (ENSCJAG00000006802) SERPINB12 (ENSCJAG00000035996) SERPINB5 (ENSCJAG00000037297) VPS4B (ENSCJAG00000006696) KDSR (ENSCJAG00000006662) BCL2 (ENSCJAG00000042791) PHLPP1 (ENSCJAG00000003250) ZCCHC2 (ENSCJAG00000003312) ENSCJAG00000070461 TNFRSF11A (ENSCJAG00000003331) RELCH (ENSCJAG00000003333) PIGN (ENSCJAG00000003367) ENSCJAG00000077061 ##22 RNF152 (ENSCJAG00000040526) CDH20 (ENSCJAG00000003409) ENSCJAG00000087077 ENSCJAG00000085951 MC4R (ENSCJAG00000022877) ENSCJAG00000074677 ENSCJAG00000078094 PMAIP1 (ENSCJAG00000077617) ENSCJAG00000081139 CCBE1 (ENSCJAG00000003456) LMAN1 (ENSCJAG00000038558) CPLX4 (ENSCJAG00000038431) RAX (ENSCJAG00000003509) ENSCJAG00000003515 SEC11C (ENSCJAG00000003521) Marmoset MODERN SPECIES 13 ETS2 (ENSCJAG00000008102) PSMG1 (ENSCJAG00000015016) BRWD1 (ENSCJAG00000015042) ENSCJAG00000045192 ENSCJAG00000038251 LCA5L (ENSCJAG00000005693) ENSCJAG00000005687 ENSCJAG00000085074 ENSCJAG00000070994 B3GALT5 (ENSCJAG00000005667) ENSCJAG00000083298 PCP4 (ENSCJAG00000086635) DSCAM (ENSCJAG00000005540) ENSCJAG00000083017 ENSCJAG00000084691 ENSCJAG00000083619 ##22 BACE2 (ENSCJAG00000011344) FAM3B (ENSCJAG00000011329) MX2 (ENSCJAG00000011261) TMPRSS2 (ENSCJAG00000011236) ENSCJAG00000085605 RIPK4 (ENSCJAG00000011251) ENSCJAG00000085735 PRDM15 (ENSCJAG00000013815) ENSCJAG00000013827 ZBTB21 (ENSCJAG00000064368) UMODL1 (ENSCJAG00000007292) ENSCJAG00000082919 ABCG1 (ENSCJAG00000033076) TFF3 (ENSCJAG00000077292) TFF2 (ENSCJAG00000007364) Marmoset MODERN SPECIES 1 RAB11A (ENSCJAG00000042037) ENSCJAG00000083582 MEGF11 (ENSCJAG00000007353) DIS3L (ENSCJAG00000007411) ENSCJAG00000085355 MAP2K1 (ENSCJAG00000007460) SNAPC5 (ENSCJAG00000070895) ENSCJAG00000007491 ZWILCH (ENSCJAG00000007524) LCTL (ENSCJAG00000007558) SMAD6 (ENSCJAG00000044644) SMAD3 (ENSCJAG00000002088) AAGAB (ENSCJAG00000002113) IQCH (ENSCJAG00000002130) ENSCJAG00000051609 ENSCJAG00000073121 ##22 C15orf61 (ENSCJAG00000054412) MAP2K5 (ENSCJAG00000002156) SKOR1 (ENSCJAG00000002196) PIAS1 (ENSCJAG00000002224) CALML4 (ENSCJAG00000002243) ENSCJAG00000002250 ENSCJAG00000074396 FEM1B (ENSCJAG00000002264) ITGA11 (ENSCJAG00000002269) CORO2B (ENSCJAG00000002319) ENSCJAG00000086993 ENSCJAG00000002339 SPESP1 (ENSCJAG00000008560) GLCE (ENSCJAG00000007136) PAQR5 (ENSCJAG00000042293) Cebidae_a DUPLICATION Cebidae_a DUPLICATION Cebidae_a DUPLICATION Cebidae_a ANCESTRAL SPECIES 5 ENSGT00730000110905.b ENSGT00940000158580 ENSGT00940000162121 ENSGT00730000111596 ENSGT00940000162202.A ENSGT00390000014843 ENSGT00940000161726 ENSGT00940000155808 ENSGT00940000159544 ENSGT00390000010327 ENSGT00940000155687 ENSGT00950000182837.b.a ENSGT00940000155606.b ENSGT00940000158666 ENSGT00940000153804.B ENSGT00950000182960.a.a.a.a.b.rb.n.a.a ##22 ENSGT00940000159521 ENSGT00560000078683 ENSGT00950000183080.a.a ENSGT00940000160653 ENSGT00940000160329 ENSGT00390000016495 ENSGT00950000183019.f.b.a ENSGT00940000156707 ENSGT00940000161665 ENSGT00940000161132 ENSGT00390000007809.a ENSGT00950000182825.A.a.b.a.b.a.b.b ENSGT00940000154457.a.a ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.m ENSGT00940000154457.a.b Capuchin MODERN SPECIES 181 ENSCCAG00000037642 ZNF641 (ENSCCAG00000036303) H1-7 (ENSCCAG00000014081) ENSCCAG00000021143 ENSCCAG00000034809 C12orf54 (ENSCCAG00000037784) LALBA (ENSCCAG00000025269) KANSL2 (ENSCCAG00000020376) CCNT1 (ENSCCAG00000023845) TEX49 (ENSCCAG00000032188) ADCY6 (ENSCCAG00000024076) CACNB3 (ENSCCAG00000036470) DDX23 (ENSCCAG00000029177) RND1 (ENSCCAG00000034569) CCDC65 (ENSCCAG00000036201) ENSCCAG00000023694 ##22 FKBP11 (ENSCCAG00000032118) ARF3 (ENSCCAG00000037739) ENSCCAG00000033541 WNT10B (ENSCCAG00000037600) WNT1 (ENSCCAG00000031046) DDN (ENSCCAG00000030806) PRKAG1 (ENSCCAG00000017317) KMT2D (ENSCCAG00000034677) RHEBL1 (ENSCCAG00000021754) DHH (ENSCCAG00000008770) LMBR1L (ENSCCAG00000034639) ENSCCAG00000036239 ENSCCAG00000032130 ENSCCAG00000032756 PRPH (ENSCCAG00000033705) Bolivian squirrel monkey MODERN SPECIES 153 CACNB3 (ENSSBOG00000002898) DDX23 (ENSSBOG00000025799) RND1 (ENSSBOG00000001346) CCDC65 (ENSSBOG00000023064) ENSSBOG00000029649 ENSSBOG00000034756 ##22 FKBP11 (ENSSBOG00000023963) ENSSBOG00000018490 ARF3 (ENSSBOG00000021606) WNT10B (ENSSBOG00000016250) WNT1 (ENSSBOG00000023811) DDN (ENSSBOG00000021863) PRKAG1 (ENSSBOG00000021677) KMT2D (ENSSBOG00000035169) RHEBL1 (ENSSBOG00000035130) DHH (ENSSBOG00000036092) LMBR1L (ENSSBOG00000023418) ENSSBOG00000028238 TUBA1B (ENSSBOG00000022158) ENSSBOG00000005771 PRPH (ENSSBOG00000032145) Cebidae_a ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.n.a.b ##22 Capuchin MODERN SPECIES 233 TRPC3 (ENSCCAG00000026199) BBS7 (ENSCCAG00000035113) CCNA2 (ENSCCAG00000035284) EXOSC9 (ENSCCAG00000030677) ENSCCAG00000028108 ANXA5 (ENSCCAG00000032773) QRFPR (ENSCCAG00000027760) TNIP3 (ENSCCAG00000026099) NDNF (ENSCCAG00000021301) PRDM5 (ENSCCAG00000023157) ENSCCAG00000037214 MAD2L1 (ENSCCAG00000030445) PDE5A (ENSCCAG00000036352) ENSCCAG00000012470 ENSCCAG00000030693 ENSCCAG00000037219 ##22 ENSCCAG00000038103 USP53 (ENSCCAG00000032146) MYOZ2 (ENSCCAG00000020503) SYNPO2 (ENSCCAG00000034953) Cebidae_a ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.n.b ##22 Bolivian squirrel monkey MODERN SPECIES 88 ARHGDIA (ENSSBOG00000020639) #8 P4HB (ENSSBOG00000022554) #9 PPP1R27 (ENSSBOG00000014736) #10 MCRIP1 (ENSSBOG00000022922) GCGR (ENSSBOG00000034949) SLC25A10 (ENSSBOG00000021807) #11 MRPL12 (ENSSBOG00000033734) #12 HGS (ENSSBOG00000018546) #13 ARL16 (ENSSBOG00000021405) #14 CCDC137 (ENSSBOG00000022756) #15 PDE6G (ENSSBOG00000020447) #17 TSPAN10 (ENSSBOG00000028820) #18 NPLOC4 (ENSSBOG00000035967) #19 FAAP100 (ENSSBOG00000015919) #20 FSCN2 (ENSSBOG00000020093) #21 ENSSBOG00000034298 ##22 BAHCC1 (ENSSBOG00000021085) #23 ENSSBOG00000022654 #24 SLC38A10 (ENSSBOG00000024816) #25 NDUFAF8 (ENSSBOG00000023492) #26 TEPSIN (ENSSBOG00000031155) #27 CEP131 (ENSSBOG00000018748) #28 PVALEF (ENSSBOG00000034351) #29 AATK (ENSSBOG00000028918) #30 BAIAP2 (ENSSBOG00000031987) #31 CHMP6 (ENSSBOG00000028502) #32 RPTOR (ENSSBOG00000026630) #33 NPTX1 (ENSSBOG00000031912) #35 ENDOV (ENSSBOG00000020840) RNF213 (ENSSBOG00000031192) SLC26A11 (ENSSBOG00000032335) Cebidae_a ANCESTRAL SPECIES 19 ENSGT00390000014547.c ENSGT00940000153500.a.a.k.b.b ENSGT00940000153500.a.a.k.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A.a.a ENSGT00940000154303.A.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb.o ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537.u ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B ENSGT00940000154444.A Bolivian squirrel monkey MODERN SPECIES 109 ACTB (ENSSBOG00000033859) ##22 FBXL18 (ENSSBOG00000028437) TNRC18 (ENSSBOG00000022203) SLC29A4 (ENSSBOG00000028436) ENSSBOG00000017597 ENSSBOG00000018947 MMD2 (ENSSBOG00000034941) RADIL (ENSSBOG00000033717) AP5Z1 (ENSSBOG00000033396) FOXK1 (ENSSBOG00000030399) SDK1 (ENSSBOG00000017847) CARD11 (ENSSBOG00000029087) GNA12 (ENSSBOG00000021243) AMZ1 (ENSSBOG00000025339) BRAT1 (ENSSBOG00000036111) IQCE (ENSSBOG00000034465) Capuchin DUPLICATION Capuchin MODERN SPECIES 82 RAC1 (ENSCCAG00000018116) DAGLB (ENSCCAG00000026009) KDELR2 (ENSCCAG00000037966) GRID2IP (ENSCCAG00000037972) ZDHHC4 (ENSCCAG00000037975) C7orf26 (ENSCCAG00000015301) ZNF853 (ENSCCAG00000037168) ZNF316 (ENSCCAG00000024464) ZNF12 (ENSCCAG00000012689) ENSCCAG00000020987 ENSCCAG00000033746 RBAK (ENSCCAG00000021483) ENSCCAG00000036334 RNF216 (ENSCCAG00000022796) FSCN1 (ENSCCAG00000035212) ##21 ACTB (ENSCCAG00000037169) ##22 ENSCCAG00000015022 FBXL18 (ENSCCAG00000025281) TNRC18 (ENSCCAG00000021919) SLC29A4 (ENSCCAG00000024270) ENSCCAG00000020156 MMD2 (ENSCCAG00000031853) RADIL (ENSCCAG00000021240) AP5Z1 (ENSCCAG00000028403) FOXK1 (ENSCCAG00000024340) SDK1 (ENSCCAG00000020198) CARD11 (ENSCCAG00000025115) GNA12 (ENSCCAG00000029418) AMZ1 (ENSCCAG00000037745) BRAT1 (ENSCCAG00000023881) Capuchin MODERN SPECIES 885 ENSCCAG00000023949 ##22 ENSCCAG00000022194 ENSCCAG00000031750 RXYLT1 (ENSCCAG00000023071) Mas night monkey DUPLICATION Mas night monkey MODERN SPECIES 875 RNF216 (ENSANAG00000023195) FSCN1 (ENSANAG00000031214) ##21 ACTB (ENSANAG00000024575) ##22 FBXL18 (ENSANAG00000028997) TNRC18 (ENSANAG00000021109) SLC29A4 (ENSANAG00000032824) ENSANAG00000030505 MMD2 (ENSANAG00000025553) RADIL (ENSANAG00000033379) PAPOLB (ENSANAG00000033074) AP5Z1 (ENSANAG00000031607) FOXK1 (ENSANAG00000019885) ENSANAG00000036328 SDK1 (ENSANAG00000022235) ENSANAG00000015540 CARD11 (ENSANAG00000032674) GNA12 (ENSANAG00000028565) ENSANAG00000026134 Mas night monkey DUPLICATION Mas night monkey MODERN SPECIES 343 ENSANAG00000030016 ENSANAG00000030780 SPATA13 (ENSANAG00000033761) ENSANAG00000019521 ENSANAG00000021371 MIPEP (ENSANAG00000027557) TNFRSF19 (ENSANAG00000032061) ENSANAG00000022043 SACS (ENSANAG00000035314) SGCG (ENSANAG00000035637) ENSANAG00000031766 ENSANAG00000034653 ZDHHC20 (ENSANAG00000029922) ENSANAG00000031404 ATP8A2 (ENSANAG00000031539) ENSANAG00000032345 ##22 SHISA2 (ENSANAG00000035019) RNF6 (ENSANAG00000029061) CDK8 (ENSANAG00000019361) WASF3 (ENSANAG00000032101) ENSANAG00000019364 GPR12 (ENSANAG00000019460) ENSANAG00000025862 ENSANAG00000031755 ENSANAG00000033775 ENSANAG00000015017 ENSANAG00000020073 ENSANAG00000022011 ENSANAG00000031654 ENSANAG00000033204 ENSANAG00000033332 Mas night monkey MODERN SPECIES 660 ENSANAG00000021626 ESRRA (ENSANAG00000033891) CATSPERZ (ENSANAG00000033403) KCNK4 (ENSANAG00000038205) GPR137 (ENSANAG00000033992) BAD (ENSANAG00000032197) PLCB3 (ENSANAG00000032258) ENSANAG00000026105 ENSANAG00000025147 VEGFB (ENSANAG00000024046) DNAJC4 (ENSANAG00000036443) NUDT22 (ENSANAG00000024100) TRPT1 (ENSANAG00000019580) FERMT3 (ENSANAG00000030526) ENSANAG00000032349 ENSANAG00000026818 ##22 FLRT1 (ENSANAG00000019976) MACROD1 (ENSANAG00000037887) OTUB1 (ENSANAG00000020656) COX8A (ENSANAG00000038341) NAA40 (ENSANAG00000032686) RCOR2 (ENSANAG00000020576) MARK2 (ENSANAG00000033532) SPINDOC (ENSANAG00000025822) ZFTA (ENSANAG00000020678) RTN3 (ENSANAG00000028798) ATL3 (ENSANAG00000023785) PLAAT3 (ENSANAG00000033413) PLAAT2 (ENSANAG00000032718) PLAAT4 (ENSANAG00000032580) LGALS12 (ENSANAG00000029421) Mas night monkey MODERN SPECIES 964 ENSANAG00000035775 TMTC4 (ENSANAG00000033527) NALCN (ENSANAG00000002054) ITGBL1 (ENSANAG00000020933) FGF14 (ENSANAG00000021289) TPP2 (ENSANAG00000001887) METTL21C (ENSANAG00000029712) TEX30 (ENSANAG00000020101) POGLUT2 (ENSANAG00000029223) ENSANAG00000020094 ENSANAG00000025711 SLC10A2 (ENSANAG00000027554) ENSANAG00000030812 EFNB2 (ENSANAG00000023792) ARGLU1 (ENSANAG00000025331) ENSANAG00000028970 ##22 NALF1 (ENSANAG00000022602) ENSANAG00000022561 LIG4 (ENSANAG00000012446) ABHD13 (ENSANAG00000031542) TNFSF13B (ENSANAG00000031847) MYO16 (ENSANAG00000030011) IRS2 (ENSANAG00000023271) Mas night monkey MODERN SPECIES 38 ENSANAG00000022227 ##22 Mas night monkey MODERN SPECIES 966 RELL2 (ENSANAG00000020895) FCHSD1 (ENSANAG00000025327) ARAP3 (ENSANAG00000023125) PCDH1 (ENSANAG00000020835) ENSANAG00000037296 DELE1 (ENSANAG00000025276) PCDH12 (ENSANAG00000026229) ENSANAG00000037813 ENSANAG00000021387 ##34 RNF14 (ENSANAG00000025736) GNPDA1 (ENSANAG00000032432) NDFIP1 (ENSANAG00000028423) ENSANAG00000024141 SPRY4 (ENSANAG00000029641) ENSANAG00000032884 ENSANAG00000037720 ##22 FGF1 (ENSANAG00000030014) ENSANAG00000029175 NR3C1 (ENSANAG00000027316) ENSANAG00000021549 ENSANAG00000020874 YIPF5 (ENSANAG00000036994) KCTD16 (ENSANAG00000026211) ENSANAG00000037716 PRELID2 (ENSANAG00000037895) GRXCR2 (ENSANAG00000029301) SH3RF2 (ENSANAG00000037988) PLAC8L1 (ENSANAG00000037249) ENSANAG00000015519 LARS1 (ENSANAG00000014375) RBM27 (ENSANAG00000034039) Catarrhini ANCESTRAL SPECIES 29 ENSGT00530000063996.b ENSGT00940000157636 ENSGT00940000158573 ENSGT00940000157747 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000164307 ENSGT00940000157972 ENSGT00940000154173.A.a.c.a ENSGT00940000154303.A.b ENSGT00510000048032 ENSGT00910000147936 ENSGT00950000183157.a.a.b ##21 ENSGT00940000154172.gb.a ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 Cercopithecidae DUPLICATION Cercopithecidae DUPLICATION Cercopithecidae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.u.a ##22 Rhinopithecus ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.u.a ##22 Golden snub-nosed monkey MODERN SPECIES 2226 NOL4 (ENSRROG00000036203) ASXL3 (ENSRROG00000045627) ENSRROG00000037181 ##22 CCDC178 (ENSRROG00000034508) ENSRROG00000000084 Black snub-nosed monkey MODERN SPECIES 472 RPRD1A (ENSRBIG00000028605) ENSRBIG00000035992 ENSRBIG00000042177 GALNT1 (ENSRBIG00000040512) INO80C (ENSRBIG00000027476) ZNF396 (ENSRBIG00000043578) ZNF24 (ENSRBIG00000031313) ENSRBIG00000038714 ZSCAN30 (ENSRBIG00000005296) ZNF397 (ENSRBIG00000028427) MAPRE2 (ENSRBIG00000032237) DTNA (ENSRBIG00000041085) NOL4 (ENSRBIG00000029317) ASXL3 (ENSRBIG00000029166) CCDC178 (ENSRBIG00000044038) ENSRBIG00000040503 ##22 ENSRBIG00000022271 GAREM1 (ENSRBIG00000038312) MEP1B (ENSRBIG00000031696) RNF138 (ENSRBIG00000032879) ENSRBIG00000010762 ASPHD1 (ENSRBIG00000033286) KCTD13 (ENSRBIG00000038323) ENSRBIG00000038715 TAOK2 (ENSRBIG00000040093) HIRIP3 (ENSRBIG00000044734) INO80E (ENSRBIG00000037079) DOC2A (ENSRBIG00000043273) TLCD3B (ENSRBIG00000030256) C16orf92 (ENSRBIG00000028784) Cercopithecidae DUPLICATION Cercopithecidae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.u.b.a ##22 Cercopithecinae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.u.b.a ##22 Cercopithecinae_a ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.u.b.a ##22 Cercopithecinae_b ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.u.b.a ##22 Cercopithecinae_d ANCESTRAL SPECIES 13 ENSGT00490000044373 ENSGT00950000182898.a.a.a.a.b ENSGT01020000230401.a.a.a.i.a.a ENSGT00940000157927 ENSGT00940000159120 ENSGT00390000013762.b.a ENSGT00940000159341 ENSGT00940000158246 ENSGT00390000006786 ENSGT00550000074922 ENSGT00390000010738 ENSGT00940000160171 ENSGT00940000156406.b ENSGT00940000158831 ENSGT00940000160562 ENSGT00950000182960.a.a.a.a.b.rb.u.b.a ##22 ENSGT00940000159767 ENSGT00940000153141.A ENSGT00940000160098 ENSGT00940000159049 ENSGT00390000005233.b ENSGT00610000086772 ENSGT00940000164139 ENSGT00940000154603.B ENSGT00940000161228 ENSGT00940000156212 ENSGT00940000157566 ENSGT00940000162401 ENSGT00940000161797 ENSGT01100000263524.B.a ENSGT00940000156827 Sooty mangabey MODERN SPECIES 97 SLC29A1 (ENSCATG00000025154) HSP90AB1 (ENSCATG00000035400) SLC35B2 (ENSCATG00000029059) NFKBIE (ENSCATG00000027685) TCTE1 (ENSCATG00000032513) TMEM151B (ENSCATG00000044696) AARS2 (ENSCATG00000033744) SPATS1 (ENSCATG00000035034) CDC5L (ENSCATG00000038925) SUPT3H (ENSCATG00000030142) RUNX2 (ENSCATG00000037036) CLIC5 (ENSCATG00000015665) ENSCATG00000031136 ENPP4 (ENSCATG00000043419) ENPP5 (ENSCATG00000042109) ENSCATG00000040982 ##22 RCAN2 (ENSCATG00000041034) CYP39A1 (ENSCATG00000034914) SLC25A27 (ENSCATG00000030691) TDRD6 (ENSCATG00000023914) PLA2G7 (ENSCATG00000041088) ANKRD66 (ENSCATG00000040079) MEP1A (ENSCATG00000043696) ADGRF5 (ENSCATG00000036293) ADGRF1 (ENSCATG00000022267) TNFRSF21 (ENSCATG00000044557) CD2AP (ENSCATG00000025941) ENSCATG00000024511 ADGRF4 (ENSCATG00000005832) OPN5 (ENSCATG00000024337) PTCHD4 (ENSCATG00000007495) Drill MODERN SPECIES 941 SLC29A1 (ENSMLEG00000037598) HSP90AB1 (ENSMLEG00000024522) SLC35B2 (ENSMLEG00000021766) NFKBIE (ENSMLEG00000038934) ENSMLEG00000039771 TCTE1 (ENSMLEG00000034744) AARS2 (ENSMLEG00000035617) SPATS1 (ENSMLEG00000032849) CDC5L (ENSMLEG00000030582) SUPT3H (ENSMLEG00000038549) RUNX2 (ENSMLEG00000029720) CLIC5 (ENSMLEG00000028897) ENPP4 (ENSMLEG00000035378) ENSMLEG00000043859 ENPP5 (ENSMLEG00000025172) ENSMLEG00000037782 ##22 RCAN2 (ENSMLEG00000039961) CYP39A1 (ENSMLEG00000032868) SLC25A27 (ENSMLEG00000033730) TDRD6 (ENSMLEG00000039418) PLA2G7 (ENSMLEG00000025348) ANKRD66 (ENSMLEG00000042482) MEP1A (ENSMLEG00000038732) ADGRF5 (ENSMLEG00000013060) ADGRF1 (ENSMLEG00000013388) TNFRSF21 (ENSMLEG00000026346) CD2AP (ENSMLEG00000043815) ENSMLEG00000038138 ADGRF4 (ENSMLEG00000043335) OPN5 (ENSMLEG00000035632) PTCHD4 (ENSMLEG00000033093) Cercopithecidae ANCESTRAL SPECIES 2 ENSGT00940000156750 ENSGT00530000063404.b ENSGT00440000037499.n ENSGT00940000155899 ENSGT00390000009609 ENSGT00940000156511 ENSGT00940000158820 ENSGT00940000159571 ENSGT00390000010568 ENSGT01050000244887.A.a.b ENSGT00940000156998 ENSGT00940000170640 ENSGT00940000154535.D ENSGT00530000063786.a.n ENSGT00940000154802 ENSGT00950000182960.a.a.a.a.b.rb.u.b.b ##22 ENSGT00940000153322.B.nb.a ENSGT00940000160961 ENSGT00940000153601.a.b ENSGT00940000155252 ENSGT00940000158786 ENSGT00420000029746.e.a.a.b ENSGT00940000164117 ENSGT00420000029746.e.a.a.a.b.a ENSGT00940000156132 ENSGT00390000004798 ENSGT00730000111085.B ENSGT01100000263606 ENSGT00390000004674 ENSGT00940000157607 ENSGT00940000154254.b Cercopithecinae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.u.b.b ##22 Cercopithecinae_a ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.u.b.b ##22 Cercopithecinae_b ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.u.b.b ##22 Cercopithecinae_d ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.u.b.b ##22 Sooty mangabey MODERN SPECIES 152 LRRC39 (ENSCATG00000036614) DBT (ENSCATG00000032994) RTCA (ENSCATG00000019364) ENSCATG00000031516 CDC14A (ENSCATG00000031864) GPR88 (ENSCATG00000016001) VCAM1 (ENSCATG00000037830) EXTL2 (ENSCATG00000018698) SLC30A7 (ENSCATG00000036739) DPH5 (ENSCATG00000024513) S1PR1 (ENSCATG00000043445) ENSCATG00000033786 OLFM3 (ENSCATG00000000012) COL11A1 (ENSCATG00000033521) RNPC3 (ENSCATG00000002086) ENSCATG00000037279 ##22 ENSCATG00000004862 ENSCATG00000019879 ENSCATG00000036797 ENSCATG00000029451 Drill MODERN SPECIES 80 COL11A1 (ENSMLEG00000040778) RNPC3 (ENSMLEG00000033628) ENSMLEG00000031922 ENSMLEG00000031313 ##22 ENSMLEG00000041469 Rhinopithecus ANCESTRAL SPECIES 841 ENSGT00530000063786.a.n ENSGT00940000154802 ENSGT00950000182960.a.a.a.a.b.rb.u.b.b ##22 Golden snub-nosed monkey MODERN SPECIES 1686 RNPC3 (ENSRROG00000032334) ENSRROG00000030734 ENSRROG00000027200 ##22 Cercopithecidae ANCESTRAL SPECIES 35 ENSGT00390000017551 ENSGT00530000063996.b ENSGT00940000157636 ENSGT00940000158573 ENSGT00940000157747 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000154173.A.a.c.a ENSGT00940000154303.A.b ENSGT00510000048032 ENSGT00910000147936 ENSGT00950000183157.a.a.b ##21 ENSGT00940000154172.gb.a ENSGT00950000182960.a.a.a.a.b.rb.v ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 Rhinopithecus ANCESTRAL SPECIES 37 ENSGT00940000159768 ENSGT00940000162735 ENSGT00390000017672 ENSGT01030000234513.A.a.a.a.b.b ENSGT00390000002480 ENSGT00390000009435 ENSGT00940000159513 ENSGT00650000093733 ENSGT00940000154325.b ENSGT00940000162386 ENSGT00940000157337 ENSGT00940000156221 ENSGT00940000159550 ENSGT00940000157613 ENSGT00940000154172.gb.a ENSGT00950000182960.a.a.a.a.b.rb.v ##22 ENSGT00390000015109 ENSGT00390000013601 ENSGT00950000182848.c.b.b.a ENSGT00640000091536 ENSGT00390000001867 ENSGT00390000012738 ENSGT00940000158729 ENSGT00940000158568 ENSGT00940000155256 ENSGT00390000012030.a ENSGT00950000182894.D ENSGT00390000015369 ENSGT00940000154317.a.a ENSGT00390000003880.b.a ENSGT00950000182941.a.a.b Black snub-nosed monkey DUPLICATION Black snub-nosed monkey MODERN SPECIES 815 RNF216 (ENSRBIG00000041538) FSCN1 (ENSRBIG00000012233) ##21 ACTB (ENSRBIG00000014104) ##22 FBXL18 (ENSRBIG00000028880) ENSRBIG00000038507 EFHD1 (ENSRBIG00000036857) EIF4E2 (ENSRBIG00000044887) ENSRBIG00000037470 CHRNG (ENSRBIG00000035390) CHRND (ENSRBIG00000040799) PRSS56 (ENSRBIG00000041026) ECEL1 (ENSRBIG00000043419) ALPI (ENSRBIG00000040260) DIS3L2 (ENSRBIG00000033993) ENSRBIG00000038058 ENSRBIG00000032930 NPPC (ENSRBIG00000033266) COPS7B (ENSRBIG00000044641) Black snub-nosed monkey MODERN SPECIES 87 ENSRBIG00000035283 ##22 ENSRBIG00000029260 Black snub-nosed monkey MODERN SPECIES 766 ZSCAN20 (ENSRBIG00000044386) CSMD2 (ENSRBIG00000034267) HMGB4 (ENSRBIG00000016201) C1orf94 (ENSRBIG00000037497) GJB5 (ENSRBIG00000026064) ENSRBIG00000035224 SMIM12 (ENSRBIG00000027493) DLGAP3 (ENSRBIG00000029580) ENSRBIG00000023057 TMEM35B (ENSRBIG00000033735) ZMYM6 (ENSRBIG00000034768) ZMYM1 (ENSRBIG00000035271) SFPQ (ENSRBIG00000035286) ZMYM4 (ENSRBIG00000036089) KIAA0319L (ENSRBIG00000040947) ENSRBIG00000041273 ##22 NCDN (ENSRBIG00000023812) TFAP2E (ENSRBIG00000038962) PSMB2 (ENSRBIG00000034620) C1orf216 (ENSRBIG00000010891) CLSPN (ENSRBIG00000030748) AGO4 (ENSRBIG00000040185) AGO1 (ENSRBIG00000032611) AGO3 (ENSRBIG00000043774) ENSRBIG00000006280 TEKT2 (ENSRBIG00000044673) ADPRS (ENSRBIG00000004132) COL8A2 (ENSRBIG00000043182) TRAPPC3 (ENSRBIG00000043692) MAP7D1 (ENSRBIG00000032601) THRAP3 (ENSRBIG00000031284) Black snub-nosed monkey DUPLICATION Black snub-nosed monkey MODERN SPECIES 1258 NPAS3 (ENSRBIG00000032686) ENSRBIG00000032788 AKAP6 (ENSRBIG00000038045) ARHGAP5 (ENSRBIG00000016020) ENSRBIG00000038307 NUBPL (ENSRBIG00000033232) DTD2 (ENSRBIG00000031412) HEATR5A (ENSRBIG00000035494) HECTD1 (ENSRBIG00000014027) ENSRBIG00000031706 STRN3 (ENSRBIG00000034106) COCH (ENSRBIG00000024567) SCFD1 (ENSRBIG00000035795) G2E3 (ENSRBIG00000038648) ENSRBIG00000021976 ENSRBIG00000044315 ##22 PRKD1 (ENSRBIG00000023650) ENSRBIG00000023096 ENSRBIG00000031563 FOXG1 (ENSRBIG00000023959) ENSRBIG00000043316 NOVA1 (ENSRBIG00000026331) Black snub-nosed monkey MODERN SPECIES 714 ENSRBIG00000040484 ENSRBIG00000031612 ##22 ENSRBIG00000035160 Golden snub-nosed monkey DUPLICATION Golden snub-nosed monkey MODERN SPECIES 1306 ENSRROG00000031470 FSCN1 (ENSRROG00000032418) ##21 ENSRROG00000041256 ENSRROG00000028698 ##22 TNRC18 (ENSRROG00000038945) SLC29A4 (ENSRROG00000034000) WIPI2 (ENSRROG00000038055) Golden snub-nosed monkey MODERN SPECIES 3144 PPDPFL (ENSRROG00000032424) SNAI2 (ENSRROG00000032273) CLXN (ENSRROG00000038117) ENSRROG00000031179 ##22 Golden snub-nosed monkey MODERN SPECIES 880 ZMYM4 (ENSRROG00000042249) KIAA0319L (ENSRROG00000033805) ENSRROG00000033752 ##22 NCDN (ENSRROG00000042808) TFAP2E (ENSRROG00000042239) PSMB2 (ENSRROG00000029102) C1orf216 (ENSRROG00000023698) CLSPN (ENSRROG00000030857) AGO4 (ENSRROG00000035783) AGO1 (ENSRROG00000044469) AGO3 (ENSRROG00000042180) ENSRROG00000027570 TEKT2 (ENSRROG00000039414) ADPRS (ENSRROG00000030199) COL8A2 (ENSRROG00000030627) TRAPPC3 (ENSRROG00000034420) MAP7D1 (ENSRROG00000045698) THRAP3 (ENSRROG00000028592) Golden snub-nosed monkey MODERN SPECIES 1973 C3orf70 (ENSRROG00000042580) EHHADH (ENSRROG00000041205) MAP3K13 (ENSRROG00000041674) ENSRROG00000008591 ##22 TMEM41A (ENSRROG00000026544) LIPH (ENSRROG00000045060) ENSRROG00000027711 IGF2BP2 (ENSRROG00000035074) ENSRROG00000036127 TRA2B (ENSRROG00000035427) ETV5 (ENSRROG00000016280) DGKG (ENSRROG00000033932) CRYGS (ENSRROG00000030522) TBCCD1 (ENSRROG00000043062) DNAJB11 (ENSRROG00000037900) AHSG (ENSRROG00000035859) FETUB (ENSRROG00000030382) HRG (ENSRROG00000033205) DCLK3 (ENSRROG00000017374) Cercopithecinae ANCESTRAL SPECIES 24 ENSGT00390000017551 ENSGT00530000063996.b ENSGT00940000157636 ENSGT00940000158573 ENSGT00940000157747 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000154173.A.a.c.a ENSGT00940000154303.A.b ENSGT00510000048032 ENSGT00910000147936 ENSGT00950000183157.a.a.b ##21 ENSGT00940000154172.gb.a ENSGT00950000182960.a.a.a.a.b.rb.v ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 Vervet Monkey DUPLICATION Vervet Monkey MODERN SPECIES 3 NFX1 (ENSCSAG00000009971) CHMP5 (ENSCSAG00000009962) BAG1 (ENSCSAG00000009948) SPINK4 (ENSCSAG00000009911) B4GALT1 (ENSCSAG00000009902) DNAJA1 (ENSCSAG00000009895) ENSCSAG00000009888 APTX (ENSCSAG00000009885) TMEM215 (ENSCSAG00000000446) TAF1L (ENSCSAG00000009875) NDUFB6 (ENSCSAG00000009865) TOPORS (ENSCSAG00000009840) RIGI (ENSCSAG00000009834) ACO1 (ENSCSAG00000009824) LINGO2 (ENSCSAG00000000445) ACTB (ENSCSAG00000000444) ##22 C9orf72 (ENSCSAG00000009804) MOB3B (ENSCSAG00000009793) IFNK (ENSCSAG00000000443) EQTN (ENSCSAG00000009785) ENSCSAG00000000442 TEK (ENSCSAG00000009773) IFT74 (ENSCSAG00000009766) LRRC19 (ENSCSAG00000009756) PLAA (ENSCSAG00000009742) CAAP1 (ENSCSAG00000009734) TUSC1 (ENSCSAG00000000441) IZUMO3 (ENSCSAG00000009727) ELAVL2 (ENSCSAG00000009718) DMRTA1 (ENSCSAG00000009709) CDKN2B (ENSCSAG00000009704) Vervet Monkey DUPLICATION Vervet Monkey MODERN SPECIES 20 FAM220A (ENSCSAG00000019493) RAC1 (ENSCSAG00000017712) DAGLB (ENSCSAG00000017706) KDELR2 (ENSCSAG00000017700) GRID2IP (ENSCSAG00000017697) ZDHHC4 (ENSCSAG00000017695) INTS15 (ENSCSAG00000017692) ZNF853 (ENSCSAG00000017691) ZNF316 (ENSCSAG00000017690) ENSCSAG00000017688 ZNF12 (ENSCSAG00000017682) ENSCSAG00000017677 RNF216 (ENSCSAG00000017676) FSCN1 (ENSCSAG00000017673) ##21 ENSCSAG00000019494 ENSCSAG00000017672 ##22 ENSCSAG00000017671 ##22 FBXL18 (ENSCSAG00000017668) TNRC18 (ENSCSAG00000017667) SLC29A4 (ENSCSAG00000017657) WIPI2 (ENSCSAG00000017655) RBAK (ENSCSAG00000017653) ENSCSAG00000017650 MMD2 (ENSCSAG00000017648) RADIL (ENSCSAG00000017644) AP5Z1 (ENSCSAG00000017641) FOXK1 (ENSCSAG00000017639) SDK1 (ENSCSAG00000017635) ENSCSAG00000017629 CARD11 (ENSCSAG00000017626) GNA12 (ENSCSAG00000017624) Vervet Monkey MODERN SPECIES 20 RAC1 (ENSCSAG00000017712) DAGLB (ENSCSAG00000017706) KDELR2 (ENSCSAG00000017700) GRID2IP (ENSCSAG00000017697) ZDHHC4 (ENSCSAG00000017695) INTS15 (ENSCSAG00000017692) ZNF853 (ENSCSAG00000017691) ZNF316 (ENSCSAG00000017690) ENSCSAG00000017688 ZNF12 (ENSCSAG00000017682) ENSCSAG00000017677 RNF216 (ENSCSAG00000017676) FSCN1 (ENSCSAG00000017673) ##21 ENSCSAG00000019494 ENSCSAG00000017672 ##22 ENSCSAG00000017671 ##22 FBXL18 (ENSCSAG00000017668) TNRC18 (ENSCSAG00000017667) SLC29A4 (ENSCSAG00000017657) WIPI2 (ENSCSAG00000017655) RBAK (ENSCSAG00000017653) ENSCSAG00000017650 MMD2 (ENSCSAG00000017648) RADIL (ENSCSAG00000017644) AP5Z1 (ENSCSAG00000017641) FOXK1 (ENSCSAG00000017639) SDK1 (ENSCSAG00000017635) ENSCSAG00000017629 CARD11 (ENSCSAG00000017626) GNA12 (ENSCSAG00000017624) AMZ1 (ENSCSAG00000017622) Cercopithecinae_a ANCESTRAL SPECIES 22 ENSGT00950000183060.a.a ENSGT00940000156018.B ENSGT00390000017551 ENSGT00530000063996.b ENSGT00940000157636 ENSGT00940000158573 ENSGT00940000157747 ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000159293 ENSGT00940000157972 ENSGT00940000154303.A.b ENSGT00510000048032 ENSGT00910000147936 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb.v ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 Cercopithecinae_b ANCESTRAL SPECIES 74 ENSGT00940000157972 ENSGT00940000154303.A.b ENSGT00510000048032 ENSGT00910000147936 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb.v ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537.s.a.a Olive baboon DUPLICATION Olive baboon MODERN SPECIES 14 ENSPANG00000035903 ENSPANG00000008247 ENSPANG00000051135 ENSPANG00000009446 ENSPANG00000018760 PMS2 (ENSPANG00000000879) AIMP2 (ENSPANG00000010693) EIF2AK1 (ENSPANG00000004605) ANKRD61 (ENSPANG00000009970) USP42 (ENSPANG00000000532) CYTH3 (ENSPANG00000015584) MMD2 (ENSPANG00000015670) RNF216 (ENSPANG00000007249) RBAK (ENSPANG00000015671) FSCN1 (ENSPANG00000009103) ##21 ACTB (ENSPANG00000015700) ##22 TNRC18 (ENSPANG00000018936) SLC29A4 (ENSPANG00000000676) ENSPANG00000017642 FAM220A (ENSPANG00000046944) ENSPANG00000033641 RAC1 (ENSPANG00000010758) DAGLB (ENSPANG00000016791) KDELR2 (ENSPANG00000018696) GRID2IP (ENSPANG00000018761) ZDHHC4 (ENSPANG00000015737) INTS15 (ENSPANG00000022201) ZNF853 (ENSPANG00000015668) ZNF316 (ENSPANG00000009015) ZNF12 (ENSPANG00000021731) ENSPANG00000024105 Olive baboon MODERN SPECIES 3 ENSPANG00000041515 KCNQ1 (ENSPANG00000006760) ENSPANG00000037475 TRPM5 (ENSPANG00000007388) TSSC4 (ENSPANG00000042853) CD81 (ENSPANG00000012976) TSPAN32 (ENSPANG00000013063) C11orf21 (ENSPANG00000034344) ASCL2 (ENSPANG00000019205) ENSPANG00000018813 TNNT3 (ENSPANG00000007734) LSP1 (ENSPANG00000021118) PRR33 (ENSPANG00000046567) TNNI2 (ENSPANG00000008021) SYT8 (ENSPANG00000007903) ACTB (ENSPANG00000041673) ##22 RPL36AL (ENSPANG00000048580) CTSD (ENSPANG00000012977) ENSPANG00000035685 ENSPANG00000049191 ENSPANG00000047185 DUSP8 (ENSPANG00000022957) MOB2 (ENSPANG00000048746) BRSK2 (ENSPANG00000019206) TOLLIP (ENSPANG00000006962) TH (ENSPANG00000006616) INS (ENSPANG00000014163) ENSPANG00000037714 IGF2 (ENSPANG00000005120) AP2A2 (ENSPANG00000016067) CHID1 (ENSPANG00000018814) Olive baboon MODERN SPECIES 1 FKBP7 (ENSPANG00000019540) PLEKHA3 (ENSPANG00000013332) TTN (ENSPANG00000022292) CCDC141 (ENSPANG00000006772) SESTD1 (ENSPANG00000020529) ZNF385B (ENSPANG00000004252) CWC22 (ENSPANG00000018976) UBE2E3 (ENSPANG00000006052) ITGA4 (ENSPANG00000007919) CERKL (ENSPANG00000004250) NEUROD1 (ENSPANG00000007303) ENSPANG00000010159 ITPRID2 (ENSPANG00000018187) PPP1R1C (ENSPANG00000026406) PDE1A (ENSPANG00000011992) ENSPANG00000009747 ##22 ENSPANG00000049718 DNAJC10 (ENSPANG00000012554) FRZB (ENSPANG00000050327) NCKAP1 (ENSPANG00000003739) DUSP19 (ENSPANG00000000355) NUP35 (ENSPANG00000013686) ENSPANG00000043715 ENSPANG00000037246 ENSPANG00000000634 ZNF804A (ENSPANG00000025573) ENSPANG00000050780 ENSPANG00000045538 ENSPANG00000044408 FSIP2 (ENSPANG00000000578) ENSPANG00000044520 Cercopithecinae_d ANCESTRAL SPECIES 219 ENSGT00940000157972 ENSGT00940000154173.A.a.c.a ENSGT00940000154303.A.b ENSGT00510000048032 ENSGT00910000147936 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb.v ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537.s.a.a Drill MODERN SPECIES 1199 RNF216 (ENSMLEG00000037743) ENSMLEG00000028388 FSCN1 (ENSMLEG00000031848) ##21 ACTB (ENSMLEG00000038914) ##22 ENSMLEG00000041631 ENSMLEG00000000039 SLC29A4 (ENSMLEG00000007690) WIPI2 (ENSMLEG00000033152) Sooty mangabey DUPLICATION Sooty mangabey MODERN SPECIES 282 ENSCATG00000043339 MMD2 (ENSCATG00000028036) ENSCATG00000032490 RBAK (ENSCATG00000041692) RNF216 (ENSCATG00000030171) FSCN1 (ENSCATG00000035433) ##21 ACTB (ENSCATG00000031161) ##22 FBXL18 (ENSCATG00000033897) TNRC18 (ENSCATG00000033102) SLC29A4 (ENSCATG00000002188) ENSCATG00000032274 Sooty mangabey MODERN SPECIES 227 C1orf94 (ENSCATG00000042668) ENSCATG00000002279 GJB5 (ENSCATG00000003985) GJB4 (ENSCATG00000004245) GJB3 (ENSCATG00000006471) ENSCATG00000006495 SMIM12 (ENSCATG00000004268) DLGAP3 (ENSCATG00000021045) ENSCATG00000043216 TMEM35B (ENSCATG00000022162) ZMYM6 (ENSCATG00000033137) ZMYM1 (ENSCATG00000043393) ENSCATG00000032664 ENSCATG00000043711 ZMYM4 (ENSCATG00000034945) ENSCATG00000042306 ##22 KIAA0319L (ENSCATG00000043672) NCDN (ENSCATG00000043234) TFAP2E (ENSCATG00000032602) PSMB2 (ENSCATG00000038881) C1orf216 (ENSCATG00000006919) CLSPN (ENSCATG00000044080) AGO4 (ENSCATG00000043421) AGO1 (ENSCATG00000031521) AGO3 (ENSCATG00000029748) ENSCATG00000005617 TEKT2 (ENSCATG00000042764) ADPRS (ENSCATG00000042745) COL8A2 (ENSCATG00000032341) TRAPPC3 (ENSCATG00000041647) MAP7D1 (ENSCATG00000038724) Macaca ANCESTRAL SPECIES 3 ENSGT00940000155825 ENSGT00390000014547.c ENSGT00940000153500.a.a.k.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A.a.c.a ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb.v ##22 ENSGT00390000015109 ENSGT00910000147820 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000154303.A.b ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Pig-tailed macaque DUPLICATION Pig-tailed macaque MODERN SPECIES 249 RNF216 (ENSMNEG00000027255) FSCN1 (ENSMNEG00000032699) ##21 ACTB (ENSMNEG00000033949) ##22 FBXL18 (ENSMNEG00000006983) ENSMNEG00000029295 TNRC18 (ENSMNEG00000030110) SLC29A4 (ENSMNEG00000029418) WIPI2 (ENSMNEG00000035019) Pig-tailed macaque MODERN SPECIES 217 HMGB4 (ENSMNEG00000025457) C1orf94 (ENSMNEG00000015831) GJB5 (ENSMNEG00000005315) GJB4 (ENSMNEG00000006153) ENSMNEG00000010043 SMIM12 (ENSMNEG00000015964) ENSMNEG00000006704 DLGAP3 (ENSMNEG00000007661) ENSMNEG00000033692 TMEM35B (ENSMNEG00000032062) ZMYM6 (ENSMNEG00000040593) ZMYM1 (ENSMNEG00000011672) SFPQ (ENSMNEG00000038895) ZMYM4 (ENSMNEG00000028361) KIAA0319L (ENSMNEG00000034746) ENSMNEG00000042114 ##22 NCDN (ENSMNEG00000036209) TFAP2E (ENSMNEG00000026563) PSMB2 (ENSMNEG00000042680) C1orf216 (ENSMNEG00000011640) CLSPN (ENSMNEG00000031665) AGO4 (ENSMNEG00000037723) AGO1 (ENSMNEG00000028881) AGO3 (ENSMNEG00000039518) ENSMNEG00000022567 TEKT2 (ENSMNEG00000034182) ADPRS (ENSMNEG00000038272) COL8A2 (ENSMNEG00000043231) TRAPPC3 (ENSMNEG00000014589) MAP7D1 (ENSMNEG00000035413) THRAP3 (ENSMNEG00000018987) Pig-tailed macaque MODERN SPECIES 284 CCDC141 (ENSMNEG00000003233) SESTD1 (ENSMNEG00000032068) ENSMNEG00000038524 ZNF385B (ENSMNEG00000033615) CWC22 (ENSMNEG00000034567) ENSMNEG00000006189 UBE2E3 (ENSMNEG00000029976) ITGA4 (ENSMNEG00000043695) CERKL (ENSMNEG00000038385) ENSMNEG00000026442 NEUROD1 (ENSMNEG00000002716) ENSMNEG00000040335 ITPRID2 (ENSMNEG00000044199) PPP1R1C (ENSMNEG00000028750) PDE1A (ENSMNEG00000038768) ENSMNEG00000037724 ##22 DNAJC10 (ENSMNEG00000042985) FRZB (ENSMNEG00000036082) NCKAP1 (ENSMNEG00000029747) ENSMNEG00000006953 DUSP19 (ENSMNEG00000031692) NUP35 (ENSMNEG00000029014) ENSMNEG00000036734 Macaca_a ANCESTRAL SPECIES 22 ENSGT00390000004010.a.b.a ENSGT00940000156486 ENSGT00940000153500.a.a.k.a.a ENSGT00390000014156.c ENSGT00940000155825 ENSGT00940000154596.b ENSGT00940000157605 ENSGT00840000130004 ENSGT00390000015826 ENSGT00940000155381 ENSGT00940000159899 ENSGT00390000004713.c.g ENSGT00940000161875 ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb.v ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000154303.A.b ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000161627.a.a.a.a.b.a.a.b.b.b ENSGT01100000263493.a.a.a.b.a.a.a.b.b.a ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Rhesus MODERN SPECIES 13 DAGLB (ENSMMUG00000010292) KDELR2 (ENSMMUG00000030415) ENSMMUG00000057114 ##34 GRID2IP (ENSMMUG00000021839) ZDHHC4 (ENSMMUG00000015545) INTS15 (ENSMMUG00000015546) ZNF853 (ENSMMUG00000038892) ENSMMUG00000064966 ZNF316 (ENSMMUG00000049742) ZNF12 (ENSMMUG00000012343) ENSMMUG00000022624 ENSMMUG00000062930 ENSMMUG00000056983 RNF216 (ENSMMUG00000000182) FSCN1 (ENSMMUG00000004282) ##21 ACTB (ENSMMUG00000011153) ##22 TNRC18 (ENSMMUG00000008220) SLC29A4 (ENSMMUG00000008219) WIPI2 (ENSMMUG00000007045) RBAK (ENSMMUG00000039501) MMD2 (ENSMMUG00000011672) RADIL (ENSMMUG00000011232) AP5Z1 (ENSMMUG00000011228) FOXK1 (ENSMMUG00000011227) SDK1 (ENSMMUG00000019724) ENSMMUG00000055884 ENSMMUG00000050115 CARD11 (ENSMMUG00000021650) GNA12 (ENSMMUG00000006460) AMZ1 (ENSMMUG00000053148) BRAT1 (ENSMMUG00000004087) Crab-eating macaque DUPLICATION Crab-eating macaque MODERN SPECIES 13 ZDHHC4 (ENSMFAG00000002456) INTS15 (ENSMFAG00000037040) ENSMFAG00000054749 ENSMFAG00000065370 ENSMFAG00000048399 ZNF12 (ENSMFAG00000006390) ENSMFAG00000042064 ENSMFAG00000061747 ENSMFAG00000057400 ENSMFAG00000062555 ENSMFAG00000003003 ENSMFAG00000036278 RNF216 (ENSMFAG00000033988) ENSMFAG00000050671 FSCN1 (ENSMFAG00000001015) ##21 ACTB (ENSMFAG00000031981) ##22 ENSMFAG00000060143 SLC29A4 (ENSMFAG00000039217) WIPI2 (ENSMFAG00000044800) ENSMFAG00000051322 ENSMFAG00000059777 ENSMFAG00000061268 RBAK (ENSMFAG00000062799) MMD2 (ENSMFAG00000045932) ENSMFAG00000060523 ENSMFAG00000047397 ENSMFAG00000051928 ENSMFAG00000052015 ENSMFAG00000065626 ENSMFAG00000057907 ENSMFAG00000047323 Crab-eating macaque MODERN SPECIES 39 ENSMFAG00000063545 ENSMFAG00000029352 ##22 ENSMFAG00000061342 ENSMFAG00000052467 Hominoidea DUPLICATION Hominoidea DUPLICATION Hominoidea ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.w.a ##22 Hominidae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.w.a ##22 Homo/Pan/Gorilla group ANCESTRAL SPECIES 6 ENSGT00390000010056.q.b ENSGT00940000159576 ENSGT00390000002210.d ENSGT00390000018505.b ENSGT00940000157376 ENSGT00390000000417.a.a.b.a.b ENSGT00940000160505 ENSGT00390000000412 ENSGT00950000182834.A.a.b.c ENSGT00940000153634.b ENSGT00950000182834.B ENSGT00570000079239 ENSGT00390000013448.a.a ENSGT00390000003465.b.b.o.b ENSGT00390000002970.q ENSGT00950000182960.a.a.a.a.b.rb.w.a ##22 ENSGT00950000183070.a.b.g.b.b.a.a ENSGT00940000153463.b ENSGT00940000154784.D.a.b ENSGT00940000160090 ENSGT00740000115684 ENSGT00940000160410 ENSGT00940000162464 ENSGT00940000157407 ENSGT00390000016736.b ENSGT00390000006681 ENSGT00390000016465 ENSGT00950000182767.a.a ENSGT00390000011405 ENSGT00940000161139 ENSGT00940000157671 Gorilla MODERN SPECIES TMEM63A (ENSGGOG00000000862) EPHX1 (ENSGGOG00000000859) SRP9 (ENSGGOG00000011555) ENSGGOG00000022660 LBR (ENSGGOG00000015250) ENSGGOG00000040109 DNAH14 (ENSGGOG00000040408) CNIH3 (ENSGGOG00000000242) WDR26 (ENSGGOG00000008231) CNIH4 (ENSGGOG00000005708) ENSGGOG00000038475 NVL (ENSGGOG00000034871) DEGS1 (ENSGGOG00000009270) ENSGGOG00000027698 FBXO28 (ENSGGOG00000010974) ENSGGOG00000036743 ##22 ENSGGOG00000036408 TP53BP2 (ENSGGOG00000003787) CAPN2 (ENSGGOG00000008027) CAPN8 (ENSGGOG00000034990) CCDC185 (ENSGGOG00000006997) SUSD4 (ENSGGOG00000003026) DISP1 (ENSGGOG00000000786) FAM177B (ENSGGOG00000017105) BROX (ENSGGOG00000000636) AIDA (ENSGGOG00000015289) ENSGGOG00000037338 MIA3 (ENSGGOG00000015271) TAF1A (ENSGGOG00000001183) HHIPL2 (ENSGGOG00000001182) ENSGGOG00000038551 Homo/Pan group ANCESTRAL SPECIES 7 ENSGT00950000183044.a.a.a.c ENSGT00390000010056.q.b ENSGT00940000159576 ENSGT00390000002210.d ENSGT00390000018505.b ENSGT00940000157376 ENSGT00390000000417.a.a.b.a.b ENSGT00940000160505 ENSGT00950000182834.A.a.b.c ENSGT00940000153634.b ENSGT00950000182834.B ENSGT00570000079239 ENSGT00390000013448.a.a ENSGT00390000003465.b.b.o.b ENSGT00390000002970.q ENSGT00950000182960.a.a.a.a.b.rb.w.a ##22 ENSGT00950000183070.a.b.g.b.b.a.a ENSGT00940000153463.b ENSGT00940000154784.D.a.b ENSGT00940000160090 ENSGT00740000115684 ENSGT00940000160410 ENSGT00940000162464 ENSGT00940000157407 ENSGT00390000016736.b ENSGT00390000006681 ENSGT00390000016465 ENSGT00950000182767.a.a ENSGT00390000011405 ENSGT00940000161139 ENSGT00940000157671 Pan ANCESTRAL SPECIES ENSGT00950000183044.a.a.a.c ENSGT00390000010056.q.b ENSGT00940000159576 ENSGT00390000002210.d ENSGT00390000018505.b ENSGT00940000157376 ENSGT00390000000417.a.a.b.a.b ENSGT00940000160505 ENSGT00950000182834.A.a.b.c ENSGT00940000153634.b ENSGT00950000182834.B ENSGT00570000079239 ENSGT00390000013448.a.a ENSGT00390000003465.b.b.o.b ENSGT00390000002970.q ENSGT00950000182960.a.a.a.a.b.rb.w.a ##22 ENSGT00950000183070.a.b.g.b.b.a.a ENSGT00940000153463.b ENSGT00940000154784.D.a.b ENSGT00940000160090 ENSGT00740000115684 ENSGT00940000160410 ENSGT00940000162464 ENSGT00940000157407 ENSGT00390000016736.b ENSGT00390000006681 ENSGT00390000016465 ENSGT00950000182767.a.a ENSGT00390000011405 ENSGT00940000161139 ENSGT00940000157671 Bonobo MODERN SPECIES PYCR2 (ENSPPAG00000029624) LEFTY1 (ENSPPAG00000031732) TMEM63A (ENSPPAG00000035003) EPHX1 (ENSPPAG00000037369) SRP9 (ENSPPAG00000042680) ENSPPAG00000027545 LBR (ENSPPAG00000029928) DNAH14 (ENSPPAG00000033548) CNIH3 (ENSPPAG00000041930) WDR26 (ENSPPAG00000030839) CNIH4 (ENSPPAG00000037258) NVL (ENSPPAG00000030596) DEGS1 (ENSPPAG00000033472) ENSPPAG00000005299 FBXO28 (ENSPPAG00000034613) ENSPPAG00000029629 ##22 ENSPPAG00000028543 TP53BP2 (ENSPPAG00000042237) CAPN2 (ENSPPAG00000035401) CAPN8 (ENSPPAG00000035387) CCDC185 (ENSPPAG00000000314) SUSD4 (ENSPPAG00000034494) TLR5 (ENSPPAG00000008829) DISP1 (ENSPPAG00000017626) FAM177B (ENSPPAG00000043057) BROX (ENSPPAG00000039244) ENSPPAG00000034152 ENSPPAG00000034603 MIA3 (ENSPPAG00000034682) TAF1A (ENSPPAG00000038647) HHIPL2 (ENSPPAG00000042275) Chimpanzee MODERN SPECIES PYCR2 (ENSPTRG00000002042) LEFTY1 (ENSPTRG00000049763) TMEM63A (ENSPTRG00000002040) EPHX1 (ENSPTRG00000002039) SRP9 (ENSPTRG00000002038) ENAH (ENSPTRG00000002037) LBR (ENSPTRG00000002036) DNAH14 (ENSPTRG00000050408) CNIH3 (ENSPTRG00000002027) WDR26 (ENSPTRG00000002026) CNIH4 (ENSPTRG00000002025) NVL (ENSPTRG00000046422) DEGS1 (ENSPTRG00000002023) ENSPTRG00000020477 FBXO28 (ENSPTRG00000002021) ENSPTRG00000051447 ##22 ENSPTRG00000050115 TP53BP2 (ENSPTRG00000002017) CAPN2 (ENSPTRG00000002016) CAPN8 (ENSPTRG00000043346) CCDC185 (ENSPTRG00000002015) SUSD4 (ENSPTRG00000002014) TLR5 (ENSPTRG00000030151) DISP1 (ENSPTRG00000002013) FAM177B (ENSPTRG00000023862) BROX (ENSPTRG00000002012) AIDA (ENSPTRG00000002010) ENSPTRG00000052614 MIA3 (ENSPTRG00000052232) TAF1A (ENSPTRG00000002007) HHIPL2 (ENSPTRG00000002006) Gibbon MODERN SPECIES 10 ENSNLEG00000028615 CD274 (ENSNLEG00000009009) PDCD1LG2 (ENSNLEG00000009028) RIC1 (ENSNLEG00000009045) ERMP1 (ENSNLEG00000009085) MLANA (ENSNLEG00000009096) KIAA2026 (ENSNLEG00000009104) ENSNLEG00000035508 IL33 (ENSNLEG00000009115) UHRF2 (ENSNLEG00000009135) GLDC (ENSNLEG00000009146) ENSNLEG00000030924 ENSNLEG00000032646 ENSNLEG00000018987 KDM4C (ENSNLEG00000017670) ENSNLEG00000027866 ##22 ENSNLEG00000028620 PTPRD (ENSNLEG00000017664) ENSNLEG00000034539 TYRP1 (ENSNLEG00000017662) LURAP1L (ENSNLEG00000017661) ENSNLEG00000032253 MPDZ (ENSNLEG00000017632) NFIB (ENSNLEG00000017626) ZDHHC21 (ENSNLEG00000017622) CER1 (ENSNLEG00000031098) FREM1 (ENSNLEG00000017613) ENSNLEG00000031209 ENSNLEG00000033891 TTC39B (ENSNLEG00000017600) SNAPC3 (ENSNLEG00000017591) Hominoidea ANCESTRAL SPECIES 141 ENSGT00950000182960.a.a.a.a.b.rb.w.b ##22 ENSGT00940000165691 Hominidae ANCESTRAL SPECIES 135 ENSGT00950000182960.a.a.a.a.b.rb.w.b ##22 ENSGT00940000165691 Homo/Pan/Gorilla group DUPLICATION Homo/Pan/Gorilla group DUPLICATION Homo/Pan/Gorilla group ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.w.b.a.a ##22 Homo/Pan group ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.w.b.a.a ##22 Pan ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.w.b.a.a ##22 Chimpanzee MODERN SPECIES 385 ACTBL2 (ENSPTRG00000009762) ##22 Gorilla MODERN SPECIES 15 ENSGGOG00000013270 ENSGGOG00000025539 ENSGGOG00000005971 ENSGGOG00000039127 ENSGGOG00000040236 ENSGGOG00000043820 ENSGGOG00000025903 ##22 ENSGGOG00000010264 FAM168B (ENSGGOG00000000077) ENSGGOG00000010538 AMER3 (ENSGGOG00000005685) GPR148 (ENSGGOG00000005680) ENSGGOG00000014452 ENSGGOG00000003802 ENSGGOG00000007645 ENSGGOG00000025236 ##22 PTPN18 (ENSGGOG00000016535) IMP4 (ENSGGOG00000001595) ENSGGOG00000001593 TUBA3E (ENSGGOG00000010909) ENSGGOG00000038820 ENSGGOG00000027097 ENSGGOG00000013262 ENSGGOG00000043016 ENSGGOG00000040171 ENSGGOG00000043835 HS6ST1 (ENSGGOG00000037761) ENSGGOG00000007883 UGGT1 (ENSGGOG00000000551) SAP130 (ENSGGOG00000016083) AMMECR1L (ENSGGOG00000014448) Homo/Pan/Gorilla group ANCESTRAL SPECIES 75 ENSGT00950000182960.a.a.a.a.b.rb.w.b.a.b ##22 ENSGT00940000165691 ENSGT00940000155492.b.d Gorilla MODERN SPECIES 15 ENSGGOG00000027097 ENSGGOG00000038820 TUBA3E (ENSGGOG00000010909) ENSGGOG00000001593 IMP4 (ENSGGOG00000001595) PTPN18 (ENSGGOG00000016535) ENSGGOG00000025236 ##22 ENSGGOG00000007645 ENSGGOG00000003802 ENSGGOG00000014452 GPR148 (ENSGGOG00000005680) AMER3 (ENSGGOG00000005685) ENSGGOG00000010538 FAM168B (ENSGGOG00000000077) ENSGGOG00000010264 ENSGGOG00000025903 ##22 ENSGGOG00000043820 ENSGGOG00000040236 ENSGGOG00000039127 ENSGGOG00000005971 ENSGGOG00000025539 ENSGGOG00000013270 ENSGGOG00000043859 ENSGGOG00000028069 ENSGGOG00000038330 ENSGGOG00000027564 ENSGGOG00000040727 ENSGGOG00000038488 ENSGGOG00000028572 ENSGGOG00000042657 ENSGGOG00000036491 Homo/Pan/Gorilla group ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.w.b.b ##22 Homo/Pan group ANCESTRAL SPECIES 79 ENSGT00390000007249.b ENSGT00940000163068.b.a.d.b.a.b ENSGT00950000182960.a.a.a.a.b.rb.w.b.b ##22 Pan ANCESTRAL SPECIES 22 ENSGT00940000157028 ENSGT00940000162379 ENSGT00940000157358 ENSGT00390000002283 ENSGT00730000111087 ENSGT00530000063675.a.d ENSGT00940000160341.b ENSGT00940000154335.a.k.b ENSGT00940000155445.e.b ENSGT00390000011422.m ENSGT00950000182825.B ENSGT00390000014845.t ENSGT00390000006044.g ENSGT00390000007249.b ENSGT00940000163068.b.a.d.b.a.b ENSGT00950000182960.a.a.a.a.b.rb.w.b.b ##22 Chimpanzee MODERN SPECIES 525 TUBA3E (ENSPTRG00000049222) ENSPTRG00000046252 ENSPTRG00000051286 ENSPTRG00000049856 ENSPTRG00000012454 ENSPTRG00000041237 ##22 ENSPTRG00000048169 Orangutan MODERN SPECIES 12 CXADR (ENSPPYG00000011295) USP25 (ENSPPYG00000011291) NRIP1 (ENSPPYG00000011290) ENSPPYG00000011288 HSPA13 (ENSPPYG00000037302) RBM11 (ENSPPYG00000011285) LIPI (ENSPPYG00000011284) ENSPPYG00000038704 ENSPPYG00000040469 ENSPPYG00000034386 ENSPPYG00000040558 ENSPPYG00000030317 ENSPPYG00000040022 ENSPPYG00000032793 ENSPPYG00000019944 ENSPPYG00000034660 ##22 ENSPPYG00000039904 Hominoidea ANCESTRAL SPECIES 6 ENSGT00940000153500.a.a.k.a.a ENSGT00390000014156.c ENSGT00940000153500.a.a.k.b ENSGT00390000014547.c ENSGT00940000155825 ENSGT00940000154596.b ENSGT00840000130004 ENSGT00940000157605 ENSGT00390000015826 ENSGT00940000155381 ENSGT00940000159899 ENSGT00390000004713.c ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00940000154172.gb.a ENSGT00950000182960.a.a.a.a.b.rb.x ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000154303.A.b ENSGT00940000154173.A.a.c.a ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b Gibbon MODERN SPECIES 7 ENSNLEG00000015697 DAGLB (ENSNLEG00000015668) KDELR2 (ENSNLEG00000015662) GRID2IP (ENSNLEG00000015646) ZDHHC4 (ENSNLEG00000015607) INTS15 (ENSNLEG00000015599) ENSNLEG00000015596 ZNF12 (ENSNLEG00000027354) ENSNLEG00000036079 ENSNLEG00000036045 ENSNLEG00000015579 ENSNLEG00000026665 RNF216 (ENSNLEG00000015530) ENSNLEG00000028647 ##21 ENSNLEG00000027252 ACTB (ENSNLEG00000015506) ##22 ENSNLEG00000031210 ENSNLEG00000027537 WIPI2 (ENSNLEG00000015492) RBAK (ENSNLEG00000030817) ENSNLEG00000036049 MMD2 (ENSNLEG00000015480) RADIL (ENSNLEG00000015475) AP5Z1 (ENSNLEG00000015462) ENSNLEG00000015459 ENSNLEG00000015435 CARD11 (ENSNLEG00000010543) GNA12 (ENSNLEG00000033618) AMZ1 (ENSNLEG00000010620) BRAT1 (ENSNLEG00000010655) IQCE (ENSNLEG00000010709) Hominidae ANCESTRAL SPECIES 26 ENSGT00940000153500.a.a.k.a.a ENSGT00390000014156.c ENSGT00940000153500.a.a.k.b ENSGT00390000014547.c ENSGT00940000155825 ENSGT00940000154596.b ENSGT00840000130004 ENSGT00940000157605 ENSGT00390000015826 ENSGT00940000155381 ENSGT00940000159899 ENSGT00390000004713.c ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00940000154172.gb.a ENSGT00950000182960.a.a.a.a.b.rb.x ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000154303.A.b ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Orangutan MODERN SPECIES 24 ENSPPYG00000031109 RNF216 (ENSPPYG00000017338) FSCN1 (ENSPPYG00000039199) ##21 ACTB (ENSPPYG00000017336) ##22 FBXL18 (ENSPPYG00000017335) TNRC18 (ENSPPYG00000017332) SLC29A4 (ENSPPYG00000017331) WIPI2 (ENSPPYG00000040908) ENSPPYG00000033860 RBAK (ENSPPYG00000017329) MMD2 (ENSPPYG00000029476) RADIL (ENSPPYG00000017327) ENSPPYG00000040747 AP5Z1 (ENSPPYG00000017326) FOXK1 (ENSPPYG00000017325) SDK1 (ENSPPYG00000017324) CARD11 (ENSPPYG00000017323) GNA12 (ENSPPYG00000017322) AMZ1 (ENSPPYG00000040103) Homo/Pan/Gorilla group ANCESTRAL SPECIES 31 ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A.a.c.a.a ENSGT00940000155381.s ENSGT00940000159899 ENSGT00390000004713.c ENSGT00940000161875.c.a ENSGT00510000048032 ENSGT00950000183157.a.a.b.x ##21 ENSGT00940000154172.gb.a ENSGT00950000182960.a.a.a.a.b.rb.x ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000154303.A.b ENSGT00910000146651.a ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b Gorilla MODERN SPECIES 20 DAGLB (ENSGGOG00000003364) RAC1 (ENSGGOG00000026733) FAM220A (ENSGGOG00000003262) CYTH3 (ENSGGOG00000015376) USP42 (ENSGGOG00000015369) ANKRD61 (ENSGGOG00000016229) EIF2AK1 (ENSGGOG00000016216) AIMP2 (ENSGGOG00000007974) PMS2 (ENSGGOG00000007960) ENSGGOG00000038387 ENSGGOG00000027454 ENSGGOG00000009068 RNF216 (ENSGGOG00000042353) FSCN1 (ENSGGOG00000025593) ##21 ENSGGOG00000025778 ACTB (ENSGGOG00000001133) ##22 FBXL18 (ENSGGOG00000014037) TNRC18 (ENSGGOG00000011875) ENSGGOG00000011862 WIPI2 (ENSGGOG00000006240) RBAK (ENSGGOG00000008465) ENSGGOG00000027654 MMD2 (ENSGGOG00000012091) RADIL (ENSGGOG00000002691) AP5Z1 (ENSGGOG00000037780) ENSGGOG00000002679 SDK1 (ENSGGOG00000012912) CARD11 (ENSGGOG00000000988) GNA12 (ENSGGOG00000009488) AMZ1 (ENSGGOG00000002895) TTYH3 (ENSGGOG00000008938) Homo/Pan group ANCESTRAL SPECIES 30 ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A.a.c.a.a ENSGT00940000155381.s ENSGT00940000159899 ENSGT00390000004713.c ENSGT00940000161875.c.a ENSGT00510000048032 ENSGT00950000183157.a.a.b.x ##21 ENSGT00940000154172.gb.a ENSGT00950000182960.a.a.a.a.b.rb.x ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000154303.A.b ENSGT00910000146651.a ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b Human MODERN SPECIES 19 DAGLB (ENSG00000164535) RAC1 (ENSG00000136238) SAGSIN1 (ENSG00000286075) FAM220A (ENSG00000178397) CYTH3 (ENSG00000008256) USP42 (ENSG00000106346) ANKRD61 (ENSG00000157999) EIF2AK1 (ENSG00000086232) AIMP2 (ENSG00000106305) PMS2 (ENSG00000122512) RSPH10B (ENSG00000155026) CCZ1 (ENSG00000122674) OCM (ENSG00000122543) RNF216 (ENSG00000011275) FSCN1 (ENSG00000075618) ##21 ACTB (ENSG00000075624) ##22 FBXL18 (ENSG00000155034) TNRC18 (ENSG00000182095) SLC29A4 (ENSG00000164638) WIPI2 (ENSG00000157954) RBAK (ENSG00000146587) RBAK-RBAKDN (ENSG00000272968) MMD2 (ENSG00000136297) PAPOLB (ENSG00000218823) RADIL (ENSG00000157927) AP5Z1 (ENSG00000242802) FOXK1 (ENSG00000164916) SDK1 (ENSG00000146555) CARD11 (ENSG00000198286) GNA12 (ENSG00000146535) AMZ1 (ENSG00000174945) Pan ANCESTRAL SPECIES 37 ENSGT00940000153500.a.a.k.b ENSGT00390000014547.c ENSGT00390000014156.c ENSGT00940000155825 ENSGT00940000154596.b ENSGT00940000157605 ENSGT00840000130004 ENSGT00390000015826 ENSGT00940000155381.s.a ENSGT00940000159899 ENSGT00390000004713.c ENSGT00940000161875.c.a ENSGT00510000048032 ENSGT00950000183157.a.a.b.x ##21 ENSGT00940000154172.gb.a ENSGT00950000182960.a.a.a.a.b.rb.x ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000154303.A.b ENSGT00910000146651.a ENSGT00940000157972 ENSGT00940000164307 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b Chimpanzee MODERN SPECIES 20 EIF2AK1 (ENSPTRG00000018904) USP42 (ENSPTRG00000018906) CYTH3 (ENSPTRG00000018907) ENSPTRG00000028666 RAC1 (ENSPTRG00000018910) ENSPTRG00000051819 ENSPTRG00000043578 ENSPTRG00000018919 ENSPTRG00000018920 ENSPTRG00000051187 ENSPTRG00000048336 OCM (ENSPTRG00000018896) RNF216 (ENSPTRG00000018894) FSCN1 (ENSPTRG00000018892) ##21 ENSPTRG00000052762 ACTB (ENSPTRG00000018890) ##22 FBXL18 (ENSPTRG00000018889) TNRC18 (ENSPTRG00000018886) SLC29A4 (ENSPTRG00000018884) WIPI2 (ENSPTRG00000018882) RBAK (ENSPTRG00000018880) MMD2 (ENSPTRG00000018878) PAPOLB (ENSPTRG00000045383) RADIL (ENSPTRG00000018877) AP5Z1 (ENSPTRG00000018876) FOXK1 (ENSPTRG00000018875) SDK1 (ENSPTRG00000018872) CARD11 (ENSPTRG00000018871) GNA12 (ENSPTRG00000018870) AMZ1 (ENSPTRG00000018869) TTYH3 (ENSPTRG00000018868) Bonobo DUPLICATION Bonobo MODERN SPECIES 20 GRID2IP (ENSPPAG00000004060) ENSPPAG00000038445 DAGLB (ENSPPAG00000031293) ENSPPAG00000032857 ENSPPAG00000042160 CYTH3 (ENSPPAG00000032310) USP42 (ENSPPAG00000029844) ANKRD61 (ENSPPAG00000042004) EIF2AK1 (ENSPPAG00000038784) AIMP2 (ENSPPAG00000035344) PMS2 (ENSPPAG00000014830) ENSPPAG00000033714 RNF216 (ENSPPAG00000032864) ENSPPAG00000041475 ##21 ENSPPAG00000033354 ACTB (ENSPPAG00000037371) ##22 FBXL18 (ENSPPAG00000027621) ENSPPAG00000040010 SLC29A4 (ENSPPAG00000038957) WIPI2 (ENSPPAG00000035034) RBAK (ENSPPAG00000012357) ENSPPAG00000028399 MMD2 (ENSPPAG00000042041) RADIL (ENSPPAG00000041551) AP5Z1 (ENSPPAG00000034107) FOXK1 (ENSPPAG00000017436) SDK1 (ENSPPAG00000033371) CARD11 (ENSPPAG00000035064) ENSPPAG00000020471 AMZ1 (ENSPPAG00000031882) TTYH3 (ENSPPAG00000036911) Bonobo MODERN SPECIES 138 ENSPPAG00000034909 ##22 Tarsier DUPLICATION Tarsier MODERN SPECIES 3925 AGR3 (ENSTSYG00000009778) ENSTSYG00000033164 ##22 AGR2 (ENSTSYG00000013523) TSPAN13 (ENSTSYG00000030041) ENSTSYG00000035064 BZW2 (ENSTSYG00000009806) ANKMY2 (ENSTSYG00000000150) LRRC72 (ENSTSYG00000008233) SOSTDC1 (ENSTSYG00000032880) ISPD (ENSTSYG00000005003) Tarsier DUPLICATION Tarsier MODERN SPECIES 2667 ENSTSYG00000026359 ##22 Tarsier MODERN SPECIES 1934 CCDC137 (ENSTSYG00000000951) #15 OXLD1 (ENSTSYG00000028341) #16 PDE6G (ENSTSYG00000031400) #17 TSPAN10 (ENSTSYG00000035506) #18 NPLOC4 (ENSTSYG00000011991) #19 FAAP100 (ENSTSYG00000036212) #20 FSCN2 (ENSTSYG00000032053) #21 ENSTSYG00000033370 ##22 Tarsier MODERN SPECIES 3943 ENSTSYG00000036183 ##22 Strepsirrhini ANCESTRAL SPECIES 14 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00910000147936 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000164307 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Bushbaby DUPLICATION Bushbaby MODERN SPECIES 207 ENSOGAG00000025751 RAC1 (ENSOGAG00000017027) DAGLB (ENSOGAG00000017029) KDELR2 (ENSOGAG00000025999) GRID2IP (ENSOGAG00000034523) ZDHHC4 (ENSOGAG00000000437) INTS15 (ENSOGAG00000000438) ZNF316 (ENSOGAG00000028380) ENSOGAG00000025231 ZNF12 (ENSOGAG00000028373) RBAK (ENSOGAG00000006946) ENSOGAG00000027519 RNF216 (ENSOGAG00000006315) FSCN1 (ENSOGAG00000025060) ##21 ENSOGAG00000008348 ##22 FBXL18 (ENSOGAG00000008341) TNRC18 (ENSOGAG00000027824) SLC29A4 (ENSOGAG00000002865) ENSOGAG00000002862 MMD2 (ENSOGAG00000011163) PAPOLB (ENSOGAG00000031103) ENSOGAG00000016264 AP5Z1 (ENSOGAG00000016256) FOXK1 (ENSOGAG00000016251) ENSOGAG00000032866 SDK1 (ENSOGAG00000007104) CARD11 (ENSOGAG00000006863) GNA12 (ENSOGAG00000006871) AMZ1 (ENSOGAG00000030973) BRAT1 (ENSOGAG00000034382) Bushbaby MODERN SPECIES 131 UAP1 (ENSOGAG00000016117) DDR2 (ENSOGAG00000010985) HSD17B7 (ENSOGAG00000010994) CCDC190 (ENSOGAG00000010997) RGS4 (ENSOGAG00000012669) RGS5 (ENSOGAG00000012674) NUF2 (ENSOGAG00000011652) PBX1 (ENSOGAG00000000132) LMX1A (ENSOGAG00000011315) RXRG (ENSOGAG00000011318) LRRC52 (ENSOGAG00000026494) MGST3 (ENSOGAG00000006196) ENSOGAG00000006198 TMCO1 (ENSOGAG00000011784) UCK2 (ENSOGAG00000014716) ENSOGAG00000032359 ##22 FAM78B (ENSOGAG00000014719) ENSOGAG00000032561 ENSOGAG00000007611 POGK (ENSOGAG00000007615) TADA1 (ENSOGAG00000007621) ILDR2 (ENSOGAG00000007624) MAEL (ENSOGAG00000007627) GPA33 (ENSOGAG00000002120) STYXL2 (ENSOGAG00000034721) POU2F1 (ENSOGAG00000005069) CD247 (ENSOGAG00000029232) CREG1 (ENSOGAG00000005362) RCSD1 (ENSOGAG00000005364) MPZL1 (ENSOGAG00000031931) ADCY10 (ENSOGAG00000032805) Lemuriformes ANCESTRAL SPECIES 6 ENSGT00960000187139 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154303.A.b ENSGT00510000048032 ENSGT00910000147936 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000164307 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Mouse lemur MODERN SPECIES 8 DAGLB (ENSMICG00000004369) KDELR2 (ENSMICG00000014334) GRID2IP (ENSMICG00000028041) ZDHHC4 (ENSMICG00000014356) INTS15 (ENSMICG00000014369) ZNF853 (ENSMICG00000034424) ZNF316 (ENSMICG00000045243) ENSMICG00000043386 ENSMICG00000029369 ENSMICG00000008171 ENSMICG00000043328 RBAK (ENSMICG00000044579) ENSMICG00000045766 RNF216 (ENSMICG00000010220) FSCN1 (ENSMICG00000010211) ##21 ACTB (ENSMICG00000002791) ##22 FBXL18 (ENSMICG00000027885) TNRC18 (ENSMICG00000028455) SLC29A4 (ENSMICG00000008173) WIPI2 (ENSMICG00000008162) MMD2 (ENSMICG00000008159) ENSMICG00000042211 RADIL (ENSMICG00000008147) AP5Z1 (ENSMICG00000008137) FOXK1 (ENSMICG00000008124) SDK1 (ENSMICG00000010289) CARD11 (ENSMICG00000000901) GNA12 (ENSMICG00000000898) AMZ1 (ENSMICG00000000895) BRAT1 (ENSMICG00000033020) IQCE (ENSMICG00000000724) Lemuriformes_a ANCESTRAL SPECIES 16 ENSGT00960000187139 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154303.A.b ENSGT00510000048032 ENSGT00910000147936 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B ENSGT00950000183060.a.a Coquerels sifaka MODERN SPECIES 155 USP42 (ENSPCOG00000018641) CYTH3 (ENSPCOG00000024782) ENSPCOG00000024195 RAC1 (ENSPCOG00000020411) DAGLB (ENSPCOG00000001509) KDELR2 (ENSPCOG00000019889) GRID2IP (ENSPCOG00000025659) ZDHHC4 (ENSPCOG00000023144) INTS15 (ENSPCOG00000007596) ZNF853 (ENSPCOG00000000221) ZNF316 (ENSPCOG00000026860) ENSPCOG00000027965 RBAK (ENSPCOG00000028132) RNF216 (ENSPCOG00000013560) FSCN1 (ENSPCOG00000014914) ##21 ACTB (ENSPCOG00000013116) ##22 FBXL18 (ENSPCOG00000018422) TNRC18 (ENSPCOG00000023756) SLC29A4 (ENSPCOG00000010272) WIPI2 (ENSPCOG00000020471) MMD2 (ENSPCOG00000012905) RADIL (ENSPCOG00000022184) AP5Z1 (ENSPCOG00000009889) FOXK1 (ENSPCOG00000028466) ENSPCOG00000013336 SDK1 (ENSPCOG00000012864) CARD11 (ENSPCOG00000019550) GNA12 (ENSPCOG00000021327) AMZ1 (ENSPCOG00000025686) BRAT1 (ENSPCOG00000022993) IQCE (ENSPCOG00000027473) Greater bamboo lemur MODERN SPECIES 887 ENSPSMG00000010954 ENSPSMG00000010949 RBAK (ENSPSMG00000010939) ENSPSMG00000010931 RNF216 (ENSPSMG00000010914) ENSPSMG00000010885 FSCN1 (ENSPSMG00000010879) ##21 ACTB (ENSPSMG00000010844) ##22 FBXL18 (ENSPSMG00000010818) ENSPSMG00000010800 Laurasiatheria ANCESTRAL SPECIES 10 ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Laurasiatheria_a ANCESTRAL SPECIES 12 ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Artiodactyla ANCESTRAL SPECIES 10 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00970000198294 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Artiodactyla_a ANCESTRAL SPECIES 10 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00970000198294 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Camelidae DUPLICATION Camelidae DUPLICATION Camelidae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.cb.a ##22 Arabian camel MODERN SPECIES 6 CYP26B1 (ENSCDRG00005018203) EXOC6B (ENSCDRG00005018306) ENSCDRG00005018472 SPR (ENSCDRG00005018514) EMX1 (ENSCDRG00005018536) SFXN5 (ENSCDRG00005003439) RAB11FIP5 (ENSCDRG00005003613) NOTO (ENSCDRG00005003672) SMYD5 (ENSCDRG00005003705) PRADC1 (ENSCDRG00005003767) CCT7 (ENSCDRG00005003801) FBXO41 (ENSCDRG00005004046) EGR4 (ENSCDRG00005004141) ALMS1 (ENSCDRG00005004228) ENSCDRG00005004616 ENSCDRG00005004644 ##22 ENSCDRG00005004675 ENSCDRG00005004682 ENSCDRG00005004694 ENSCDRG00005004727 DCTN1 (ENSCDRG00005004787) ENSCDRG00005005318 TPRKB (ENSCDRG00005005399) SLC4A5 (ENSCDRG00005005453) MTHFD2 (ENSCDRG00005005556) MOB1A (ENSCDRG00005005596) BOLA3 (ENSCDRG00005005624) TET3 (ENSCDRG00005005658) DGUOK (ENSCDRG00005005857) ACTG2 (ENSCDRG00005005885) STAMBP (ENSCDRG00005005935) Alpaca MODERN SPECIES 4057 ACTB (ENSVPAG00000010513) ##22 Camelidae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb.cb.b ##22 Arabian camel MODERN SPECIES 4 FOXD3 (ENSCDRG00005003471) ALG6 (ENSCDRG00005003516) ITGB3BP (ENSCDRG00005003577) EFCAB7 (ENSCDRG00005003668) PGM1 (ENSCDRG00005003722) ROR1 (ENSCDRG00005003848) UBE2U (ENSCDRG00005003953) CACHD1 (ENSCDRG00005004143) RAVER2 (ENSCDRG00005004547) ENSCDRG00005004583 JAK1 (ENSCDRG00005004601) ENSCDRG00005004652 DNAJC6 (ENSCDRG00005004711) LEPROT (ENSCDRG00005005302) LEPR (ENSCDRG00005005388) ENSCDRG00005005483 ##22 PDE4B (ENSCDRG00005005526) SGIP1 (ENSCDRG00005005920) DYNLT5 (ENSCDRG00005006169) INSL5 (ENSCDRG00005006189) DNAI4 (ENSCDRG00005006212) MIER1 (ENSCDRG00005006406) SLC35D1 (ENSCDRG00005006715) ENSCDRG00005006792 IL23R (ENSCDRG00005006826) IL12RB2 (ENSCDRG00005006997) SERBP1 (ENSCDRG00005007209) GADD45A (ENSCDRG00005007265) GNG12 (ENSCDRG00005007385) DIRAS3 (ENSCDRG00005007399) WLS (ENSCDRG00005007433) Camelidae ANCESTRAL SPECIES 24 ENSGT00440000038159 ENSGT00530000064242.b ENSGT00940000158139 ENSGT00940000162897 ENSGT00390000008983.b ENSGT00940000154631 ENSGT00390000003115 ENSGT00950000183018.a.d ENSGT00940000154303.A.b ENSGT00530000064130 ENSGT00950000182890.A.a.b.b ENSGT00940000161752 ENSGT00940000164720 ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb.db ##22 ENSGT00390000015109 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B ENSGT00950000183060.a.a ENSGT00940000158717 Arabian camel MODERN SPECIES 9 ENSCDRG00005015699 RAC1 (ENSCDRG00005015728) DAGLB (ENSCDRG00005015756) KDELR2 (ENSCDRG00005015850) GRID2IP (ENSCDRG00005015967) ZDHHC4 (ENSCDRG00005016662) INTS15 (ENSCDRG00005016697) ENSCDRG00005017008 ENSCDRG00005017157 ZNF12 (ENSCDRG00005017904) ENSCDRG00005018000 RBAK (ENSCDRG00005018032) ENSCDRG00005018077 RNF216 (ENSCDRG00005018101) FSCN1 (ENSCDRG00005018200) ##21 ACTB (ENSCDRG00005018212) ##22 FBXL18 (ENSCDRG00005018252) SLC29A4 (ENSCDRG00005018363) WIPI2 (ENSCDRG00005018395) MMD2 (ENSCDRG00005018573) RADIL (ENSCDRG00005018617) AP5Z1 (ENSCDRG00005018641) FOXK1 (ENSCDRG00005018700) SDK1 (ENSCDRG00005018992) CARD11 (ENSCDRG00005008897) GNA12 (ENSCDRG00005009204) AMZ1 (ENSCDRG00005009306) BRAT1 (ENSCDRG00005009341) IQCE (ENSCDRG00005009376) TTYH3 (ENSCDRG00005009493) LFNG (ENSCDRG00005009682) Alpaca MODERN SPECIES 5819 ENSVPAG00000009468 ##22 Artiodactyla_b ANCESTRAL SPECIES 9 ENSGT00390000014547.c ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00970000198294 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Pecora ANCESTRAL SPECIES 10 ENSGT00390000014547.c ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00970000198294 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Yarkand deer DUPLICATION Yarkand deer MODERN SPECIES 303 ENSCHYG00000009152 ##22 Yarkand deer MODERN SPECIES 305 ENSCHYG00000009483 ##22 Percora_a ANCESTRAL SPECIES 9 ENSGT00390000014547.c.k ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00970000198294 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Siberian musk deer MODERN SPECIES 1230 ENSMMSG00000016866 DAGLB (ENSMMSG00000016939) KDELR2 (ENSMMSG00000017019) GRID2IP (ENSMMSG00000017080) ENSMMSG00000017493 INTS15 (ENSMMSG00000017528) ZNF316 (ENSMMSG00000017659) ZNF12 (ENSMMSG00000017688) ENSMMSG00000017740 RBAK (ENSMMSG00000017783) ENSMMSG00000017828 ENSMMSG00000017847 RNF216 (ENSMMSG00000017884) ENSMMSG00000017948 FSCN1 (ENSMMSG00000017978) ##21 ACTB (ENSMMSG00000018023) ##22 FBXL18 (ENSMMSG00000018071) TNRC18 (ENSMMSG00000018152) SLC29A4 (ENSMMSG00000018364) WIPI2 (ENSMMSG00000018409) MMD2 (ENSMMSG00000018717) RADIL (ENSMMSG00000018796) PAPOLB (ENSMMSG00000018831) AP5Z1 (ENSMMSG00000018851) FOXK1 (ENSMMSG00000018891) SDK1 (ENSMMSG00000018981) ENSMMSG00000019177 ENSMMSG00000019200 ENSMMSG00000019215 CARD11 (ENSMMSG00000019225) GNA12 (ENSMMSG00000019243) Bovidae ANCESTRAL SPECIES 11 ENSGT00390000014547.c.l ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00970000198294 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Bovinae ANCESTRAL SPECIES 7 ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT00940000162678.c.b ENSGT00390000006264.d ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00740000116898 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00970000198294 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551.y.a American bison MODERN SPECIES 3140 ENSBBBG00000009985 RAC1 (ENSBBBG00000008427) DAGLB (ENSBBBG00000001669) KDELR2 (ENSBBBG00000001663) GRID2IP (ENSBBBG00000009936) ZDHHC4 (ENSBBBG00000009898) INTS15 (ENSBBBG00000009885) ENSBBBG00000009880 ZNF12 (ENSBBBG00000006926) ENSBBBG00000009865 RBAK (ENSBBBG00000009857) ENSBBBG00000009853 RNF216 (ENSBBBG00000009848) FSCN1 (ENSBBBG00000009842) ##21 ENSBBBG00000009839 ACTB (ENSBBBG00000009838) ##22 FBXL18 (ENSBBBG00000009835) TNRC18 (ENSBBBG00000009831) SLC29A4 (ENSBBBG00000001639) WIPI2 (ENSBBBG00000009815) ENSBBBG00000009797 ENSBBBG00000001631 SDK1 (ENSBBBG00000009770) Bos ANCESTRAL SPECIES 9 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00940000162678.c.b ENSGT00960000191467 ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00740000116898 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00970000198294 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551.y.a Bos_b ANCESTRAL SPECIES 6 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00940000162678.c.b ENSGT00960000191467 ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00740000116898 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00970000198294 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551.z Cow MODERN SPECIES 17 DAGLB (ENSBTAG00000009236) KDELR2 (ENSBTAG00000009237) GRID2IP (ENSBTAG00000003308) ZDHHC4 (ENSBTAG00000009547) INTS15 (ENSBTAG00000021248) ZNF853 (ENSBTAG00000053996) ZNF316 (ENSBTAG00000003953) ZNF12 (ENSBTAG00000039782) ENSBTAG00000040014 RBAK (ENSBTAG00000010291) OR10AH1 (ENSBTAG00000005600) ENSBTAG00000048231 RNF216 (ENSBTAG00000017175) FSCN1 (ENSBTAG00000003191) ##21 ENSBTAG00000047781 ACTB (ENSBTAG00000026199) ##22 FBXL18 (ENSBTAG00000010264) TNRC18 (ENSBTAG00000037400) SLC29A4 (ENSBTAG00000007772) WIPI2 (ENSBTAG00000012049) MMD2 (ENSBTAG00000021913) ENSBTAG00000051446 RADIL (ENSBTAG00000030690) PAPOLB (ENSBTAG00000052734) AP5Z1 (ENSBTAG00000012197) FOXK1 (ENSBTAG00000019310) SDK1 (ENSBTAG00000004035) CARD11 (ENSBTAG00000014698) GNA12 (ENSBTAG00000017871) AMZ1 (ENSBTAG00000026194) BRAT1 (ENSBTAG00000014502) Hybrid Bos Indicus MODERN SPECIES 17 RAC1 (ENSBIXG00005016208) DAGLB (ENSBIXG00005016269) KDELR2 (ENSBIXG00005016301) GRID2IP (ENSBIXG00005016633) ZDHHC4 (ENSBIXG00005016695) INTS15 (ENSBIXG00005016776) ZNF853 (ENSBIXG00005016791) ZNF316 (ENSBIXG00005005424) ZNF12 (ENSBIXG00005016846) ENSBIXG00005002730 RBAK (ENSBIXG00005016874) ENSBIXG00005016887 ENSBIXG00005016906 RNF216 (ENSBIXG00005016940) FSCN1 (ENSBIXG00005016968) ##21 ACTB (ENSBIXG00005017151) ##22 ENSBIXG00005017173 FBXL18 (ENSBIXG00005017190) SLC29A4 (ENSBIXG00005017203) WIPI2 (ENSBIXG00005002852) ENSBIXG00005002865 TNRC18 (ENSBIXG00005017820) RADIL (ENSBIXG00005017981) AP5Z1 (ENSBIXG00005018053) FOXK1 (ENSBIXG00005018085) SDK1 (ENSBIXG00005007808) CARD11 (ENSBIXG00005007809) GNA12 (ENSBIXG00005018233) AMZ1 (ENSBIXG00005018259) BRAT1 (ENSBIXG00005018315) IQCE (ENSBIXG00005002974) Bos_a ANCESTRAL SPECIES 35 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT00940000162678.c.b ENSGT00960000191467 ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00740000116898 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00960000192432 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551.y.a Wild yak MODERN SPECIES 73 ENSBMUG00000021270 RNF216 (ENSBMUG00000021250) FSCN1 (ENSBMUG00000021206) ##21 ENSBMUG00000021189 ACTB (ENSBMUG00000021165) ##22 ENSBMUG00000021154 ENSBMUG00000021147 TNRC18 (ENSBMUG00000021120) SLC29A4 (ENSBMUG00000020907) WIPI2 (ENSBMUG00000020803) MMD2 (ENSBMUG00000020771) ENSBMUG00000020753 ENSBMUG00000020742 AP5Z1 (ENSBMUG00000020698) FOXK1 (ENSBMUG00000020629) SDK1 (ENSBMUG00000020412) CARD11 (ENSBMUG00000019839) GNA12 (ENSBMUG00000019819) AMZ1 (ENSBMUG00000019796) BRAT1 (ENSBMUG00000019772) Domestic yak MODERN SPECIES 18 RAC1 (ENSBGRG00000025825) DAGLB (ENSBGRG00000025849) KDELR2 (ENSBGRG00000025874) GRID2IP (ENSBGRG00000025896) INTS15 (ENSBGRG00000025912) ENSBGRG00000016685 ZNF316 (ENSBGRG00000016721) ZNF12 (ENSBGRG00000016763) ENSBGRG00000016800 RBAK (ENSBGRG00000016858) ENSBGRG00000017510 ENSBGRG00000017557 RNF216 (ENSBGRG00000017667) FSCN1 (ENSBGRG00000017874) ##21 ENSBGRG00000017951 ACTB (ENSBGRG00000017982) ##22 ENSBGRG00000018069 ENSBGRG00000018131 TNRC18 (ENSBGRG00000018231) SLC29A4 (ENSBGRG00000019655) WIPI2 (ENSBGRG00000019714) MMD2 (ENSBGRG00000020317) RADIL (ENSBGRG00000020566) ENSBGRG00000020674 AP5Z1 (ENSBGRG00000020737) FOXK1 (ENSBGRG00000021371) SDK1 (ENSBGRG00000021551) CARD11 (ENSBGRG00000022867) GNA12 (ENSBGRG00000022907) BRAT1 (ENSBGRG00000022933) ENSBGRG00000023152 Caprinae ANCESTRAL SPECIES 7 ENSGT00390000014547.c.l ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Rambouillet Sheep MODERN SPECIES 16 ENSOARG00020024065 RAC1 (ENSOARG00020006453) DAGLB (ENSOARG00020006576) KDELR2 (ENSOARG00020006875) GRID2IP (ENSOARG00020006999) ZDHHC4 (ENSOARG00020007779) INTS15 (ENSOARG00020007817) ZNF853 (ENSOARG00020007948) ZNF316 (ENSOARG00020007995) ZNF12 (ENSOARG00020008082) ENSOARG00020008271 RBAK (ENSOARG00020008438) ENSOARG00020008480 RNF216 (ENSOARG00020008508) FSCN1 (ENSOARG00020008659) ##21 ACTB (ENSOARG00020008714) ##22 FBXL18 (ENSOARG00020008770) TNRC18 (ENSOARG00020008851) SLC29A4 (ENSOARG00020009420) WIPI2 (ENSOARG00020009492) MMD2 (ENSOARG00020009846) RADIL (ENSOARG00020010079) PAPOLB (ENSOARG00020010298) ENSOARG00020010356 FOXK1 (ENSOARG00020010449) SDK1 (ENSOARG00020010638) CARD11 (ENSOARG00020012438) GNA12 (ENSOARG00020012511) AMZ1 (ENSOARG00020012565) IQCE (ENSOARG00020012871) TTYH3 (ENSOARG00020013477) Goat MODERN SPECIES 17 ENSCHIG00000012626 RAC1 (ENSCHIG00000023897) DAGLB (ENSCHIG00000025751) KDELR2 (ENSCHIG00000016693) GRID2IP (ENSCHIG00000019697) ZDHHC4 (ENSCHIG00000011078) INTS15 (ENSCHIG00000023779) ZNF853 (ENSCHIG00000026318) ZNF316 (ENSCHIG00000024346) ZNF12 (ENSCHIG00000011026) ENSCHIG00000019239 RBAK (ENSCHIG00000026024) ENSCHIG00000009168 RNF216 (ENSCHIG00000020520) FSCN1 (ENSCHIG00000013676) ##21 ACTB (ENSCHIG00000013316) ##22 FBXL18 (ENSCHIG00000001815) TNRC18 (ENSCHIG00000015061) SLC29A4 (ENSCHIG00000013461) WIPI2 (ENSCHIG00000025379) ENSCHIG00000000713 MMD2 (ENSCHIG00000024011) RADIL (ENSCHIG00000024632) AP5Z1 (ENSCHIG00000016014) FOXK1 (ENSCHIG00000020886) SDK1 (ENSCHIG00000019963) CARD11 (ENSCHIG00000020978) GNA12 (ENSCHIG00000024235) AMZ1 (ENSCHIG00000015074) BRAT1 (ENSCHIG00000024721) IQCE (ENSCHIG00000017381) Cetacea ANCESTRAL SPECIES 3 ENSGT00960000187139 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT00940000154303.C ENSGT00510000048032 ENSGT00950000183157.a.a.b.u ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Blue whale MODERN SPECIES 6 RAC1 (ENSBMSG00010016821) DAGLB (ENSBMSG00010016888) KDELR2 (ENSBMSG00010016947) GRID2IP (ENSBMSG00010017008) ZDHHC4 (ENSBMSG00010017231) INTS15 (ENSBMSG00010017272) ZNF853 (ENSBMSG00010017356) ZNF316 (ENSBMSG00010017370) ENSBMSG00010017391 ENSBMSG00010017413 ENSBMSG00010017442 RBAK (ENSBMSG00010017485) ENSBMSG00010017515 RNF216 (ENSBMSG00010017535) ENSBMSG00010017603 ##21 ENSBMSG00010017637 ##22 FBXL18 (ENSBMSG00010017696) TNRC18 (ENSBMSG00010017759) SLC29A4 (ENSBMSG00010017873) WIPI2 (ENSBMSG00010017926) MMD2 (ENSBMSG00010018042) RADIL (ENSBMSG00010018116) ENSBMSG00010018143 AP5Z1 (ENSBMSG00010018185) FOXK1 (ENSBMSG00010018237) ENSBMSG00010018280 ENSBMSG00010018316 ENSBMSG00010018352 SDK1 (ENSBMSG00010018467) CARD11 (ENSBMSG00010019073) GNA12 (ENSBMSG00010019098) Odontoceti ANCESTRAL SPECIES 3 ENSGT00390000014547.c ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT00940000154303.C ENSGT00510000048032 ENSGT00950000183157.a.a.b.u ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B ENSGT00940000163679 Sperm whale MODERN SPECIES 5 GRIFIN (ENSPCTG00005021271) LFNG (ENSPCTG00005021209) TTYH3 (ENSPCTG00005021162) TMEM184A (ENSPCTG00005021137) MAFK (ENSPCTG00005021123) BRAT1 (ENSPCTG00005021063) AMZ1 (ENSPCTG00005020993) GNA12 (ENSPCTG00005020975) CARD11 (ENSPCTG00005020928) SDK1 (ENSPCTG00005018696) FOXK1 (ENSPCTG00005018245) AP5Z1 (ENSPCTG00005018171) RADIL (ENSPCTG00005017969) MMD2 (ENSPCTG00005017807) TNRC18 (ENSPCTG00005017434) ACTB (ENSPCTG00005017252) ##22 RNF216 (ENSPCTG00005017081) ENSPCTG00005017024 RBAK (ENSPCTG00005016990) ZDHHC4 (ENSPCTG00005016951) C14H7orf26 (ENSPCTG00005016757) ENSPCTG00005016669 ENSPCTG00005016653 #8 ZNF316 (ENSPCTG00005016544) DAGLB (ENSPCTG00005016386) RAC1 (ENSPCTG00005016300) ENSPCTG00005016265 FAM220A (ENSPCTG00005016247) CYTH3 (ENSPCTG00005016072) USP42 (ENSPCTG00005016015) ENSPCTG00005015924 Odontoceti_a ANCESTRAL SPECIES 3 ENSGT00390000014547.c ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT00940000154303.C ENSGT00510000048032 ENSGT00950000183157.a.a.b.u ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B ENSGT00940000163679 Dolphin MODERN SPECIES 1182 ACTB (ENSTTRG00000001953) ##22 FBXL18 (ENSTTRG00000001952) Odontoceti_b ANCESTRAL SPECIES 3 ENSGT00390000014547.c ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT00940000154303.C ENSGT00510000048032 ENSGT00950000183157.a.a.b.u ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000163679 ENSGT00950000183060.a.a Vaquita MODERN SPECIES 6 ENSPSNG00000014592 KDELR2 (ENSPSNG00000014657) GRID2IP (ENSPSNG00000014825) ZDHHC4 (ENSPSNG00000015850) INTS15 (ENSPSNG00000015900) ZNF853 (ENSPSNG00000015959) ZNF316 (ENSPSNG00000016002) ZNF12 (ENSPSNG00000016057) ENSPSNG00000016093 ENSPSNG00000016180 RBAK (ENSPSNG00000016251) ENSPSNG00000016310 ENSPSNG00000016330 RNF216 (ENSPSNG00000016427) FSCN1 (ENSPSNG00000016530) ##21 ACTB (ENSPSNG00000016578) ##22 FBXL18 (ENSPSNG00000016641) TNRC18 (ENSPSNG00000016824) SLC29A4 (ENSPSNG00000017127) WIPI2 (ENSPSNG00000017206) MMD2 (ENSPSNG00000017675) RADIL (ENSPSNG00000017840) AP5Z1 (ENSPSNG00000017978) FOXK1 (ENSPSNG00000018041) SDK1 (ENSPSNG00000018322) ENSPSNG00000019511 CARD11 (ENSPSNG00000019591) GNA12 (ENSPSNG00000019651) AMZ1 (ENSPSNG00000019678) BRAT1 (ENSPSNG00000019766) ENSPSNG00000019812 Monodontidae ANCESTRAL SPECIES 1 ENSGT00390000014156 ENSGT00390000014547.c ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT00510000048032 ENSGT00950000183157.a.a.b.u ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B ENSGT00940000163679 Narwhal DUPLICATION Narwhal MODERN SPECIES 299 FAM220A (ENSMMNG00015004094) ENSMMNG00015004103 RAC1 (ENSMMNG00015004118) DAGLB (ENSMMNG00015004155) KDELR2 (ENSMMNG00015004183) GRID2IP (ENSMMNG00015004237) ZDHHC4 (ENSMMNG00015004329) INTS15 (ENSMMNG00015004351) ZNF853 (ENSMMNG00015004374) ZNF316 (ENSMMNG00015004386) ENSMMNG00015004399 ZNF12 (ENSMMNG00015004410) RBAK (ENSMMNG00015004421) RNF216 (ENSMMNG00015004436) FSCN1 (ENSMMNG00015004457) ##21 ACTB (ENSMMNG00015004465) ##22 FBXL18 (ENSMMNG00015004476) TNRC18 (ENSMMNG00015000119) SLC29A4 (ENSMMNG00015000434) WIPI2 (ENSMMNG00015000506) MMD2 (ENSMMNG00015000620) ENSMMNG00015000661 ENSMMNG00015000682 ENSMMNG00015000725 CARD11 (ENSMMNG00015000750) GNA12 (ENSMMNG00015000806) AMZ1 (ENSMMNG00015000837) BRAT1 (ENSMMNG00015000870) IQCE (ENSMMNG00015000989) TTYH3 (ENSMMNG00015001133) LFNG (ENSMMNG00015001212) Narwhal MODERN SPECIES 311 TMEM254 (ENSMMNG00015012964) PLAC9 (ENSMMNG00015012952) ENSMMNG00015012941 ANXA11 (ENSMMNG00015012925) ENSMMNG00015012913 ZCCHC24 (ENSMMNG00015012905) PPIF (ENSMMNG00015012885) ZMIZ1 (ENSMMNG00015012852) ENSMMNG00015012806 POLR3A (ENSMMNG00015012741) DLG5 (ENSMMNG00015012641) KCNMA1 (ENSMMNG00015011966) LRMDA (ENSMMNG00015011597) ZNF503 (ENSMMNG00015011576) ENSMMNG00015011565 ENSMMNG00015011553 ##22 COMTD1 (ENSMMNG00015011519) VDAC2 (ENSMMNG00015011504) SAMD8 (ENSMMNG00015011491) DUSP13 (ENSMMNG00015011440) DUSP29 (ENSMMNG00015011409) KAT6B (ENSMMNG00015011393) ADK (ENSMMNG00015011303) AP3M1 (ENSMMNG00015011241) VCL (ENSMMNG00015011199) PLAU (ENSMMNG00015011120) CAMK2G (ENSMMNG00015011060) NDST2 (ENSMMNG00015010993) ZSWIM8 (ENSMMNG00015010974) CHCHD1 (ENSMMNG00015010957) FUT11 (ENSMMNG00015010939) Beluga whale DUPLICATION Beluga whale MODERN SPECIES 48 RAC1 (ENSDLEG00000020724) DAGLB (ENSDLEG00000020750) KDELR2 (ENSDLEG00000020768) GRID2IP (ENSDLEG00000020777) ZDHHC4 (ENSDLEG00000020816) CUNH7orf26 (ENSDLEG00000020822) ZNF316 (ENSDLEG00000020834) ENSDLEG00000020842 ZNF12 (ENSDLEG00000020849) ENSDLEG00000020858 RBAK (ENSDLEG00000020874) ENSDLEG00000020890 ENSDLEG00000020897 RNF216 (ENSDLEG00000020911) FSCN1 (ENSDLEG00000020922) ##21 ACTB (ENSDLEG00000020930) ##22 FBXL18 (ENSDLEG00000020936) TNRC18 (ENSDLEG00000020944) SLC29A4 (ENSDLEG00000020956) WIPI2 (ENSDLEG00000020964) MMD2 (ENSDLEG00000020967) AP5Z1 (ENSDLEG00000020980) FOXK1 (ENSDLEG00000020989) SDK1 (ENSDLEG00000021011) Beluga whale MODERN SPECIES 65 ENSDLEG00000008507 ENSDLEG00000008547 ZCCHC24 (ENSDLEG00000008566) PPIF (ENSDLEG00000008590) ZMIZ1 (ENSDLEG00000008643) RPS24 (ENSDLEG00000008847) POLR3A (ENSDLEG00000008899) DLG5 (ENSDLEG00000009115) ENSDLEG00000009359 KCNMA1 (ENSDLEG00000009375) ENSDLEG00000009522 ENSDLEG00000009527 LRMDA (ENSDLEG00000009546) ZNF503 (ENSDLEG00000009559) ENSDLEG00000009567 ENSDLEG00000009581 ##22 COMTD1 (ENSDLEG00000009625) VDAC2 (ENSDLEG00000009647) SAMD8 (ENSDLEG00000009683) DUSP13 (ENSDLEG00000009704) DUSP29 (ENSDLEG00000009742) KAT6B (ENSDLEG00000009762) ADK (ENSDLEG00000009807) AP3M1 (ENSDLEG00000009868) VCL (ENSDLEG00000009901) PLAU (ENSDLEG00000010069) CAMK2G (ENSDLEG00000010121) NDST2 (ENSDLEG00000010390) ZSWIM8 (ENSDLEG00000010444) CHCHD1 (ENSDLEG00000010487) FUT11 (ENSDLEG00000010504) Suina ANCESTRAL SPECIES 46 ENSGT00390000014547.c ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00970000198294 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000164307 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Pig MODERN SPECIES 11 DAGLB (ENSSSCG00000027288) KDELR2 (ENSSSCG00000031432) GRID2IP (ENSSSCG00000037070) ZDHHC4 (ENSSSCG00000039719) INTS15 (ENSSSCG00000036192) ZNF853 (ENSSSCG00000037890) ZNF316 (ENSSSCG00000023378) ENSSSCG00000008665 ZNF12 (ENSSSCG00000034517) ENSSSCG00000032257 RBAK (ENSSSCG00000008668) ENSSSCG00000031365 ENSSSCG00000052755 RNF216 (ENSSSCG00000021285) FSCN1 (ENSSSCG00000007586) ##21 ACTB (ENSSSCG00000007585) ##22 ENSSSCG00000044331 FBXL18 (ENSSSCG00000038526) TNRC18 (ENSSSCG00000022553) SLC29A4 (ENSSSCG00000027768) WIPI2 (ENSSSCG00000007580) MMD2 (ENSSSCG00000007578) RADIL (ENSSSCG00000007575) AP5Z1 (ENSSSCG00000007577) FOXK1 (ENSSSCG00000007576) SDK1 (ENSSSCG00000007574) CARD11 (ENSSSCG00000034390) GNA12 (ENSSSCG00000055213) AMZ1 (ENSSSCG00000007564) BRAT1 (ENSSSCG00000007563) IQCE (ENSSSCG00000007568) Chacoan peccary MODERN SPECIES 833 CYTH3 (ENSCWAG00000009772) FAM220A (ENSCWAG00000009757) ENSCWAG00000009732 RAC1 (ENSCWAG00000009644) DAGLB (ENSCWAG00000009568) KDELR2 (ENSCWAG00000009516) GRID2IP (ENSCWAG00000008513) ENSCWAG00000008394 INTS15 (ENSCWAG00000008254) ZNF316 (ENSCWAG00000008130) ZNF12 (ENSCWAG00000007983) ENSCWAG00000007902 RBAK (ENSCWAG00000007855) RNF216 (ENSCWAG00000020194) FSCN1 (ENSCWAG00000020177) ##21 ACTB (ENSCWAG00000020160) ##22 FBXL18 (ENSCWAG00000020141) TNRC18 (ENSCWAG00000019752) SLC29A4 (ENSCWAG00000019677) WIPI2 (ENSCWAG00000019589) MMD2 (ENSCWAG00000019552) PAPOLB (ENSCWAG00000019478) RADIL (ENSCWAG00000019444) AP5Z1 (ENSCWAG00000019415) FOXK1 (ENSCWAG00000019374) SDK1 (ENSCWAG00000017684) CARD11 (ENSCWAG00000017329) GNA12 (ENSCWAG00000017294) AMZ1 (ENSCWAG00000017211) BRAT1 (ENSCWAG00000017117) IQCE (ENSCWAG00000016367) Laurasiatheria_b ANCESTRAL SPECIES 12 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00940000154303.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Carnivora ANCESTRAL SPECIES 12 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00940000154303.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Caniformia ANCESTRAL SPECIES 8 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00940000154303.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Caniformia_b ANCESTRAL SPECIES 7 ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00940000154303.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000164307 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Ursidae ANCESTRAL SPECIES 3 ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00910000146965 ENSGT00390000011370 ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00950000182890.A.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000164307 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Ursus ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb ##22 American black bear MODERN SPECIES 42 KDELR2 (ENSUAMG00000023534) GRID2IP (ENSUAMG00000023537) ZDHHC4 (ENSUAMG00000023548) ENSUAMG00000023551 INTS15 (ENSUAMG00000023552) ENSUAMG00000023557 ENSUAMG00000023558 ENSUAMG00000023559 ENSUAMG00000023581 ZNF12 (ENSUAMG00000023608) ENSUAMG00000023609 RBAK (ENSUAMG00000023610) ENSUAMG00000023611 RNF216 (ENSUAMG00000023613) FSCN1 (ENSUAMG00000023614) ##21 ENSUAMG00000023615 ##22 Giant Panda DUPLICATION Giant Panda MODERN SPECIES 816 ENSAMEG00000024759 ##22 Giant Panda MODERN SPECIES 2069 ENSAMEG00000030859 ##22 Giant Panda DUPLICATION Giant Panda MODERN SPECIES 2108 ENSAMEG00000019137 ##22 Giant Panda MODERN SPECIES 2006 ENSAMEG00000025519 ##22 Giant Panda MODERN SPECIES 2019 ENSAMEG00000028582 ##22 Mustelinae ANCESTRAL SPECIES 64 ENSGT00390000014547.c ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000164307 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B American mink MODERN SPECIES 113 ENSNVIG00000006191 ENSNVIG00000006188 RAC1 (ENSNVIG00000006036) DAGLB (ENSNVIG00000005999) KDELR2 (ENSNVIG00000005984) GRID2IP (ENSNVIG00000005909) ZDHC4 (ENSNVIG00000005822) INTS15 (ENSNVIG00000005787) ZNF316 (ENSNVIG00000005744) ENSNVIG00000005736 ZNF12 (ENSNVIG00000005705) RBAK (ENSNVIG00000005690) ENSNVIG00000005682 RNF216 (ENSNVIG00000005665) FSCN1 (ENSNVIG00000005656) ##21 ACTB (ENSNVIG00000005620) ##22 FBXL18 (ENSNVIG00000005606) TNRC18 (ENSNVIG00000005507) SLC29A4 (ENSNVIG00000005478) WIPI2 (ENSNVIG00000005410) MMD2 (ENSNVIG00000005381) ENSNVIG00000005365 RADIL (ENSNVIG00000005352) AP5Z1 (ENSNVIG00000005295) FOXK1 (ENSNVIG00000005282) SDK1 (ENSNVIG00000005012) CARD11 (ENSNVIG00000004967) GNA12 (ENSNVIG00000004952) AMZ1 (ENSNVIG00000004916) BRAT1 (ENSNVIG00000004892) IQCE (ENSNVIG00000004762) Ferret MODERN SPECIES 366 DAGLB (ENSMPUG00000016581) KDELR2 (ENSMPUG00000016583) GRID2IP (ENSMPUG00000016585) ZDHHC4 (ENSMPUG00000016586) INTS15 (ENSMPUG00000016589) ENSMPUG00000016591 ZNF316 (ENSMPUG00000016592) ENSMPUG00000016594 ZNF12 (ENSMPUG00000016596) ENSMPUG00000016601 RBAK (ENSMPUG00000016607) ENSMPUG00000020103 ENSMPUG00000016608 RNF216 (ENSMPUG00000016610) FSCN1 (ENSMPUG00000016611) ##21 ACTB (ENSMPUG00000016612) ##22 FBXL18 (ENSMPUG00000016613) TNRC18 (ENSMPUG00000016618) SLC29A4 (ENSMPUG00000016628) ENSMPUG00000020104 WIPI2 (ENSMPUG00000016629) MMD2 (ENSMPUG00000016644) RADIL (ENSMPUG00000016653) AP5Z1 (ENSMPUG00000016654) FOXK1 (ENSMPUG00000016655) ENSMPUG00000016656 ENSMPUG00000016657 SDK1 (ENSMPUG00000016658) Canidae ANCESTRAL SPECIES 3 ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A.z ENSGT00940000154173.A.y ENSGT00940000154303.A.b ENSGT00950000182890.A.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Canis_lupus ANCESTRAL SPECIES 2 ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A.y.a ENSGT00940000154173.A.y.b ENSGT00940000154303.A.b ENSGT00990000207633 ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Dog DUPLICATION Dog MODERN SPECIES 22 LETM1 (ENSCAFG00845013211) FGFR3 (ENSCAFG00845013339) TACC3 (ENSCAFG00845013476) TMEM129 (ENSCAFG00845000213) SLBP (ENSCAFG00845000261) FAM53A (ENSCAFG00845000302) NKX1-1 (ENSCAFG00845000317) UVSSA (ENSCAFG00845000348) ENSCAFG00845000407 ENSCAFG00845000433 ENSCAFG00845000449 MED28 (ENSCAFG00845000492) LAP3 (ENSCAFG00845000510) CLRN2 (ENSCAFG00845000538) QDPR (ENSCAFG00845000600) ENSCAFG00845000652 ##22 ENSCAFG00845000676 LDB2 (ENSCAFG00845000708) TAPT1 (ENSCAFG00845000756) PROM1 (ENSCAFG00845000922) ENSCAFG00845001269 FGFBP1 (ENSCAFG00845001279) CD38 (ENSCAFG00845001294) FAM200B (ENSCAFG00845001332) BST1 (ENSCAFG00845001361) FBXL5 (ENSCAFG00845001403) CC2D2A (ENSCAFG00845001505) ENSCAFG00845001714 C1QTNF7 (ENSCAFG00845001735) CPEB2 (ENSCAFG00845001961) BOD1L1 (ENSCAFG00845002214) Dog MODERN SPECIES 34 ZDHHC4 (ENSCAFG00845012594) C6H7orf26 (ENSCAFG00845012647) ZNF853 (ENSCAFG00845012765) ZNF316 (ENSCAFG00845012808) ENSCAFG00845012837 ENSCAFG00845012858 ZNF12 (ENSCAFG00845012896) ENSCAFG00845012927 ENSCAFG00845012969 ENSCAFG00845013016 ENSCAFG00845013049 ENSCAFG00845013157 ENSCAFG00845013182 ENSCAFG00845013229 FSCN1 (ENSCAFG00845013389) ##21 ACTB (ENSCAFG00845013473) ##22 FBXL18 (ENSCAFG00845013529) TNRC18 (ENSCAFG00845013689) SLC29A4 (ENSCAFG00845013927) WIPI2 (ENSCAFG00845013987) RADIL (ENSCAFG00845014147) PAPOLB (ENSCAFG00845014285) AP5Z1 (ENSCAFG00845014308) FOXK1 (ENSCAFG00845014339) SDK1 (ENSCAFG00845014480) CARD11 (ENSCAFG00845015176) GNA12 (ENSCAFG00845015668) ENSCAFG00845015695 AMZ1 (ENSCAFG00845015724) ENSCAFG00845015772 ENSCAFG00845005796 Dingo DUPLICATION Dingo MODERN SPECIES 351 GRID2IP (ENSCAFG00020017108) ZDHHC4 (ENSCAFG00020017122) INTS15 (ENSCAFG00020017128) ZNF853 (ENSCAFG00020017130) ZNF316 (ENSCAFG00020017131) ENSCAFG00020017134 ENSCAFG00020017136 ZNF12 (ENSCAFG00020017137) ENSCAFG00020017140 ENSCAFG00020017146 RBAK (ENSCAFG00020017150) ENSCAFG00020017164 RNF216 (ENSCAFG00020017169) FSCN1 (ENSCAFG00020017175) ##21 ENSCAFG00020017179 ##22 ACTB (ENSCAFG00020017181) ##22 FBXL18 (ENSCAFG00020017182) TNRC18 (ENSCAFG00020017198) SLC29A4 (ENSCAFG00020017294) WIPI2 (ENSCAFG00020017298) MMD2 (ENSCAFG00020017313) RADIL (ENSCAFG00020017323) ENSCAFG00020017324 AP5Z1 (ENSCAFG00020017328) FOXK1 (ENSCAFG00020017334) Dingo MODERN SPECIES 351 KDELR2 (ENSCAFG00020017103) GRID2IP (ENSCAFG00020017108) ZDHHC4 (ENSCAFG00020017122) INTS15 (ENSCAFG00020017128) ZNF853 (ENSCAFG00020017130) ZNF316 (ENSCAFG00020017131) ENSCAFG00020017134 ENSCAFG00020017136 ZNF12 (ENSCAFG00020017137) ENSCAFG00020017140 ENSCAFG00020017146 RBAK (ENSCAFG00020017150) ENSCAFG00020017164 RNF216 (ENSCAFG00020017169) FSCN1 (ENSCAFG00020017175) ##21 ENSCAFG00020017179 ##22 ACTB (ENSCAFG00020017181) ##22 FBXL18 (ENSCAFG00020017182) TNRC18 (ENSCAFG00020017198) SLC29A4 (ENSCAFG00020017294) WIPI2 (ENSCAFG00020017298) MMD2 (ENSCAFG00020017313) RADIL (ENSCAFG00020017323) ENSCAFG00020017324 AP5Z1 (ENSCAFG00020017328) FOXK1 (ENSCAFG00020017334) Red fox DUPLICATION Red fox MODERN SPECIES 85 RBAK (ENSVVUG00000006406) ENSVVUG00000006401 RNF216 (ENSVVUG00000006387) FSCN1 (ENSVVUG00000006354) ##21 ENSVVUG00000006351 ##22 ENSVVUG00000006348 #22 FBXL18 (ENSVVUG00000006340) TNRC18 (ENSVVUG00000006202) SLC29A4 (ENSVVUG00000006184) WIPI2 (ENSVVUG00000006176) ENSVVUG00000006170 RADIL (ENSVVUG00000006124) AP5Z1 (ENSVVUG00000006080) FOXK1 (ENSVVUG00000006072) SDK1 (ENSVVUG00000005985) CARD11 (ENSVVUG00000005644) GNA12 (ENSVVUG00000005611) AMZ1 (ENSVVUG00000005606) BRAT1 (ENSVVUG00000005583) IQCE (ENSVVUG00000005475) Red fox MODERN SPECIES 8 PIK3C2B (ENSVVUG00000014869) MDM4 (ENSVVUG00000014855) LRRN2 (ENSVVUG00000014853) ENSVVUG00000014852 ENSVVUG00000014851 NFASC (ENSVVUG00000014840) CNTN2 (ENSVVUG00000014833) TMEM81 (ENSVVUG00000014832) RBBP5 (ENSVVUG00000014830) DSTYK (ENSVVUG00000013766) TMCC2 (ENSVVUG00000013711) NUAK2 (ENSVVUG00000013705) KLHDC8A (ENSVVUG00000013701) LEMD1 (ENSVVUG00000013700) CDK18 (ENSVVUG00000013685) ENSVVUG00000013677 ##22 ENSVVUG00000013663 MFSD4A (ENSVVUG00000013656) ELK4 (ENSVVUG00000013648) SLC45A3 (ENSVVUG00000013645) NUCKS1 (ENSVVUG00000013631) RAB29 (ENSVVUG00000013627) SLC41A1 (ENSVVUG00000013622) PM20D1 (ENSVVUG00000013600) SLC26A9 (ENSVVUG00000013585) RAB7B (ENSVVUG00000013579) CTSE (ENSVVUG00000013575) RHEX (ENSVVUG00000013572) AVPR1B (ENSVVUG00000013571) FAM72A (ENSVVUG00000013564) SRGAP2 (ENSVVUG00000013560) Felidae ANCESTRAL SPECIES 19 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT00940000154303.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00390000005052.s.b.a ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 Cat MODERN SPECIES 247 RAC1 (ENSFCAG00000011361) DAGLB (ENSFCAG00000011362) KDELR2 (ENSFCAG00000031430) GRID2IP (ENSFCAG00000007510) ZDHHC4 (ENSFCAG00000023338) INTS15 (ENSFCAG00000008338) ZNF853 (ENSFCAG00000040667) ZNF316 (ENSFCAG00000043529) ENSFCAG00000051237 ZNF12 (ENSFCAG00000008342) ENSFCAG00000001821 RBAK (ENSFCAG00000037840) ENSFCAG00000048020 RNF216 (ENSFCAG00000013381) FSCN1 (ENSFCAG00000009023) ##21 ACTB (ENSFCAG00000006788) ##22 FBXL18 (ENSFCAG00000007266) TNRC18 (ENSFCAG00000001949) SLC29A4 (ENSFCAG00000001946) WIPI2 (ENSFCAG00000009990) ENSFCAG00000042383 PAPOLB (ENSFCAG00000041877) AP5Z1 (ENSFCAG00000009983) RADIL (ENSFCAG00000009986) SDK1 (ENSFCAG00000012315) CARD11 (ENSFCAG00000008561) GNA12 (ENSFCAG00000043446) AMZ1 (ENSFCAG00000008559) BRAT1 (ENSFCAG00000031391) IQCE (ENSFCAG00000025676) TTYH3 (ENSFCAG00000022890) Panthera ANCESTRAL SPECIES 27 ENSGT00960000187139 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00390000005052.s.b.a ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Panthera_a ANCESTRAL SPECIES 27 ENSGT00960000187139 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00390000005052.s.b.a ENSGT00940000157972 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B lion MODERN SPECIES 16 ENSPLOG00000013878 RAC1 (ENSPLOG00000013940) DAGLB (ENSPLOG00000014032) KDELR2 (ENSPLOG00000014105) GRID2IP (ENSPLOG00000014225) ZDHHC4 (ENSPLOG00000014884) INTS15 (ENSPLOG00000014931) ZNF853 (ENSPLOG00000015012) ZNF316 (ENSPLOG00000015027) ENSPLOG00000015076 ZNF12 (ENSPLOG00000015122) ENSPLOG00000015268 RBAK (ENSPLOG00000015338) RNF216 (ENSPLOG00000015392) FSCN1 (ENSPLOG00000015460) ##21 ACTB (ENSPLOG00000015512) ##22 FBXL18 (ENSPLOG00000015550) TNRC18 (ENSPLOG00000015617) SLC29A4 (ENSPLOG00000015768) WIPI2 (ENSPLOG00000015941) ENSPLOG00000016250 MMD2 (ENSPLOG00000016274) RADIL (ENSPLOG00000016400) AP5Z1 (ENSPLOG00000016568) FOXK1 (ENSPLOG00000016612) SDK1 (ENSPLOG00000017002) ENSPLOG00000018861 GNA12 (ENSPLOG00000018946) AMZ1 (ENSPLOG00000018986) BRAT1 (ENSPLOG00000019081) IQCE (ENSPLOG00000019203) leopard MODERN SPECIES 91 FAM220A (ENSPPRG00000010389) ENSPPRG00000010644 RAC1 (ENSPPRG00000011136) DAGLB (ENSPPRG00000013174) KDELR2 (ENSPPRG00000013747) GRID2IP (ENSPPRG00000023803) ZDHHC4 (ENSPPRG00000022766) INTS15 (ENSPPRG00000000233) ZNF853 (ENSPPRG00000000332) ZNF316 (ENSPPRG00000000894) ZNF12 (ENSPPRG00000001734) ENSPPRG00000001934 RBAK (ENSPPRG00000002149) RNF216 (ENSPPRG00000003482) FSCN1 (ENSPPRG00000003969) ##21 ACTB (ENSPPRG00000004533) ##22 FBXL18 (ENSPPRG00000004952) TNRC18 (ENSPPRG00000009594) SLC29A4 (ENSPPRG00000011198) WIPI2 (ENSPPRG00000013624) ENSPPRG00000015768 MMD2 (ENSPPRG00000014336) RADIL (ENSPPRG00000015310) AP5Z1 (ENSPPRG00000017985) SDK1 (ENSPPRG00000005273) ENSPPRG00000005793 CARD11 (ENSPPRG00000006200) GNA12 (ENSPPRG00000006633) AMZ1 (ENSPPRG00000007695) BRAT1 (ENSPPRG00000008016) IQCE (ENSPPRG00000013509) Laurasiatheria_c ANCESTRAL SPECIES 12 ENSGT00960000187139 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000164307 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Equus ANCESTRAL SPECIES 22 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000165394 ENSGT00940000154303.B ENSGT00940000154173.A ENSGT00940000154303.A.b ENSGT00940000162441.d ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000164307 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Horse DUPLICATION Horse MODERN SPECIES 4 KDELR2 (ENSECAG00000052302) GRID2IP (ENSECAG00000010225) ZDHHC4 (ENSECAG00000000176) INTS15 (ENSECAG00000011713) ZNF853 (ENSECAG00000035205) ZNF316 (ENSECAG00000039546) ENSECAG00000057783 ENSECAG00000002260 ENSECAG00000007603 RBAK (ENSECAG00000009724) ZNF12 (ENSECAG00000016420) OR10AH1B (ENSECAG00000042711) ENSECAG00000050823 RNF216 (ENSECAG00000013171) FSCN1 (ENSECAG00000008056) ##21 ACTB (ENSECAG00000015935) ##22 FBXL18 (ENSECAG00000018678) TNRC18 (ENSECAG00000021171) SLC29A4 (ENSECAG00000021634) WIPI2 (ENSECAG00000022114) MMD2 (ENSECAG00000015536) PAPOLB (ENSECAG00000053418) RADIL (ENSECAG00000019718) AP5Z1 (ENSECAG00000058137) FOXK1 (ENSECAG00000015133) ENSECAG00000003681 SDK1 (ENSECAG00000016545) ENSECAG00000058327 CARD11 (ENSECAG00000005704) GNA12 (ENSECAG00000020160) AMZ1 (ENSECAG00000021322) Horse MODERN SPECIES 3 CD44 (ENSECAG00000010267) SLC1A2 (ENSECAG00000015644) PAMR1 (ENSECAG00000018049) FJX1 (ENSECAG00000006501) TRIM44 (ENSECAG00000018868) LDLRAD3 (ENSECAG00000019236) ENSECAG00000053975 ENSECAG00000046809 COMMD9 (ENSECAG00000019749) PRR5L (ENSECAG00000020162) TRAF6 (ENSECAG00000021091) RAG1 (ENSECAG00000021936) RAG2 (ENSECAG00000021988) IFTAP (ENSECAG00000022013) LRRC4C (ENSECAG00000022329) ENSECAG00000002481 ##22 API5 (ENSECAG00000047216) TTC17 (ENSECAG00000000753) ENSECAG00000057228 HSD17B12 (ENSECAG00000010538) ALKBH3 (ENSECAG00000010673) ACCSL (ENSECAG00000011908) ACCS (ENSECAG00000013484) EXT2 (ENSECAG00000015881) ALX4 (ENSECAG00000019892) CD82 (ENSECAG00000020051) TP53I11 (ENSECAG00000023101) PRDM11 (ENSECAG00000023612) SYT13 (ENSECAG00000023889) CHST1 (ENSECAG00000024106) SLC35C1 (ENSECAG00000000770) Donkey DUPLICATION Donkey DUPLICATION Donkey MODERN SPECIES 5 DAGLB (ENSEASG00005000637) KDELR2 (ENSEASG00005000632) GRID2IP (ENSEASG00005000529) ZDHHC4 (ENSEASG00005000494) INTS15 (ENSEASG00005000468) ZNF853 (ENSEASG00005036604) ZNF316 (ENSEASG00005032381) ENSEASG00005032120 ENSEASG00005000421 ENSEASG00005037577 ENSEASG00005028623 ENSEASG00005000386 ENSEASG00005000366 ENSEASG00005000044 FSCN1 (ENSEASG00005000015) ##21 ENSEASG00005032101 ##22 FBXL18 (ENSEASG00005021567) ENSEASG00005029233 SLC29A4 (ENSEASG00005034570) WIPI2 (ENSEASG00005021536) MMD2 (ENSEASG00005021534) RADIL (ENSEASG00005021515) AP5Z1 (ENSEASG00005021502) FOXK1 (ENSEASG00005021498) SDK1 (ENSEASG00005021355) CARD11 (ENSEASG00005021231) GNA12 (ENSEASG00005024839) ENSEASG00005021210 ENSEASG00005021202 ENSEASG00005021196 ENSEASG00005021187 Donkey MODERN SPECIES 20 IGF2R (ENSEASG00005019232) SLC22A1 (ENSEASG00005019667) SLC22A2 (ENSEASG00005019670) SLC22A3 (ENSEASG00005019679) ENSEASG00005019697 MAP3K4 (ENSEASG00005019701) ENSEASG00005019709 ENSEASG00005019711 PRKN (ENSEASG00005019721) PACRG (ENSEASG00005019723) QKI (ENSEASG00005019724) C6orf118 (ENSEASG00005019727) PDE10A (ENSEASG00005019729) TBXT (ENSEASG00005000114) ENSEASG00005000239 ENSEASG00005011917 ##22 SFT2D1 (ENSEASG00005028687) ENSEASG00005029716 RPS6KA2 (ENSEASG00005000339) RNASET2 (ENSEASG00005000345) CEP43 (ENSEASG00005000363) CCR6 (ENSEASG00005028790) ENSEASG00005027533 ENSEASG00005026055 ENSEASG00005000398 AFDN (ENSEASG00005000410) ENSEASG00005000454 ENSEASG00005000482 ENSEASG00005000507 ENSEASG00005028919 SMOC2 (ENSEASG00005000517) Donkey MODERN SPECIES 8 PDHX (ENSEASG00005020238) ENSEASG00005020239 CD44 (ENSEASG00005020242) SLC1A2 (ENSEASG00005020253) PAMR1 (ENSEASG00005020262) FJX1 (ENSEASG00005020266) TRIM44 (ENSEASG00005020267) LDLRAD3 (ENSEASG00005025501) COMMD9 (ENSEASG00005013520) PRR5L (ENSEASG00005013530) TRAF6 (ENSEASG00005033142) RAG1 (ENSEASG00005013538) RAG2 (ENSEASG00005013540) IFTAP (ENSEASG00005013541) LRRC4C (ENSEASG00005014797) ENSEASG00005014801 ##22 API5 (ENSEASG00005014816) TTC17 (ENSEASG00005014829) HSD17B12 (ENSEASG00005014853) ALKBH3 (ENSEASG00005014856) C11orf96 (ENSEASG00005014860) ACCSL (ENSEASG00005014863) ACCS (ENSEASG00005014868) EXT2 (ENSEASG00005014877) ALX4 (ENSEASG00005014886) CD82 (ENSEASG00005014890) TSPAN18 (ENSEASG00005026170) ENSEASG00005024242 PRDM11 (ENSEASG00005014907) SYT13 (ENSEASG00005014911) CHST1 (ENSEASG00005014919) Chiroptera ANCESTRAL SPECIES 51 ENSGT00390000014156 ENSGT00390000014547.c ENSGT00960000187139 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154303.A.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Microchiroptera ANCESTRAL SPECIES 48 ENSGT00390000014156 ENSGT00390000014547.c ENSGT00960000187139 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000156663.B ENSGT00940000162728 ENSGT00940000154303.B ENSGT00940000154303.A.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000155537 ENSGT00940000157972 ENSGT00940000159293 ENSGT00940000164307 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00940000156018.B Microbat DUPLICATION Microbat MODERN SPECIES 1047 GFI1 (ENSMLUG00000015191) ENSMLUG00000001016 GLMN (ENSMLUG00000016988) C1orf146 (ENSMLUG00000016984) BTBD8 (ENSMLUG00000002081) ENSMLUG00000002075 ENSMLUG00000017219 EPHX4 (ENSMLUG00000028235) ENSMLUG00000006232 TGFBR3 (ENSMLUG00000010405) CDC7 (ENSMLUG00000015065) ENSMLUG00000023375 HFM1 (ENSMLUG00000010200) ZNF644 (ENSMLUG00000010460) BARHL2 (ENSMLUG00000015680) ENSMLUG00000003609 ##22 ZNF326 (ENSMLUG00000004873) LRRC8D (ENSMLUG00000004872) ENSMLUG00000022819 LRRC8C (ENSMLUG00000012629) ENSMLUG00000023648 ENSMLUG00000027061 ENSMLUG00000028619 ENSMLUG00000000313 ENSMLUG00000030747 ENSMLUG00000008729 Microbat MODERN SPECIES 2156 ENSMLUG00000011525 ##22 FBXL18 (ENSMLUG00000003317) Greater horseshoe bat DUPLICATION Greater horseshoe bat MODERN SPECIES 16 FAM220A (ENSRFEG00010009862) ENSRFEG00010009875 ENSRFEG00010009899 RAC1 (ENSRFEG00010009950) DAGLB (ENSRFEG00010009989) GRID2IP (ENSRFEG00010010184) ENSRFEG00010011143 ZDHHC4 (ENSRFEG00010011173) INTS15 (ENSRFEG00010011207) ZNF853 (ENSRFEG00010011438) ZNF316 (ENSRFEG00010011513) RBAK (ENSRFEG00010011587) ENSRFEG00010011657 RNF216 (ENSRFEG00010011679) FSCN1 (ENSRFEG00010011743) ##21 ACTB (ENSRFEG00010011816) ##22 FBXL18 (ENSRFEG00010011882) TNRC18 (ENSRFEG00010012024) SLC29A4 (ENSRFEG00010012223) WIPI2 (ENSRFEG00010012504) MMD2 (ENSRFEG00010012618) RADIL (ENSRFEG00010012660) ENSRFEG00010012716 AP5Z1 (ENSRFEG00010012785) FOXK1 (ENSRFEG00010012837) SDK1 (ENSRFEG00010012938) CARD11 (ENSRFEG00010014966) GNA12 (ENSRFEG00010015037) AMZ1 (ENSRFEG00010015108) BRAT1 (ENSRFEG00010015202) IQCE (ENSRFEG00010015252) Greater horseshoe bat MODERN SPECIES 7 CFAP46 (ENSRFEG00010005557) NKX6-2 (ENSRFEG00010005830) INPP5A (ENSRFEG00010005875) PWWP2B (ENSRFEG00010005938) LRRC27 (ENSRFEG00010005986) STK32C (ENSRFEG00010006040) DPYSL4 (ENSRFEG00010006110) JAKMIP3 (ENSRFEG00010006261) BNIP3 (ENSRFEG00010006456) PPP2R2D (ENSRFEG00010006475) TCERG1L (ENSRFEG00010006553) GLRX3 (ENSRFEG00010006617) C10orf143 (ENSRFEG00010006663) EBF3 (ENSRFEG00010006695) MGMT (ENSRFEG00010006726) ENSRFEG00010006747 ##22 ENSRFEG00010006777 PTPRE (ENSRFEG00010006840) CLRN3 (ENSRFEG00010006914) FOXI2 (ENSRFEG00010006944) NPS (ENSRFEG00010006976) DOCK1 (ENSRFEG00010007054) INSYN2A (ENSRFEG00010007237) C10orf90 (ENSRFEG00010007318) ADAM12 (ENSRFEG00010007460) FANK1 (ENSRFEG00010007706) DHX32 (ENSRFEG00010007894) BCCIP (ENSRFEG00010007976) UROS (ENSRFEG00010008009) MMP21 (ENSRFEG00010008092) EDRF1 (ENSRFEG00010008318) Atlantogenata ANCESTRAL SPECIES 21 ENSGT00940000153500.a.a ENSGT00940000156486 ENSGT00390000004010.a.b.a ENSGT00940000157625.b ENSGT00920000149163 ENSGT00390000011370 ENSGT00940000162728 ENSGT00940000154303.A ENSGT01050000244815.B.a.b.b ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.b #22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 ENSGT00940000160777 ENSGT00940000155037 ENSGT00940000159355 Afrotheria ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a.b.rb ##22 Tenrec MODERN SPECIES 12138 ACTB (ENSETEG00000015843) ##22 Xenarthra ANCESTRAL SPECIES 1916 ENSGT00950000182960.a.a.a.a.b.rb ##22 ENSGT00390000015109 Armadillo DUPLICATION Armadillo DUPLICATION Armadillo MODERN SPECIES 4737 ENSDNOG00000008776 ##22 Armadillo MODERN SPECIES 3534 ENSDNOG00000046677 ##22 ENSDNOG00000044269 Armadillo MODERN SPECIES 4248 FGF16 (ENSDNOG00000036657) ENSDNOG00000043529 ##22 MAGT1 (ENSDNOG00000048406) COX7B (ENSDNOG00000044803) Armadillo MODERN SPECIES 503 ENSDNOG00000043658 ##22 ENSDNOG00000039891 ENSDNOG00000038673 Anura ANCESTRAL SPECIES 73 ENSGT00950000183060.a.b.a ENSGT00940000163996 ENSGT00940000160989 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a.b.b ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00410000026495.C ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.a.a.b #22 ENSGT00950000182960.a.a.a.a.b ##22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00390000015076 #27 ENSGT00390000001758 #28 ENSGT00940000164863 ENSGT00940000154244.A #30 ENSGT00940000153560.b.a.a #31 ENSGT00720000108863 #32 ENSGT00640000091541 #33 ENSGT01060000248591.a.a.b #35 ENSGT00390000011880 ENSGT00630000089884.C ENSGT01070000253775.b ENSGT00390000013080 ENSGT00940000160777 Frog MODERN SPECIES 1 ENSXETG00000044963 sstr2 (ENSXETG00000045408) slc39a11 (ENSXETG00000009976) ENSXETG00000043229 sox9 (ENSXETG00000035507) kcnj2 (ENSXETG00000042973) kcnj16 (ENSXETG00000045680) ENSXETG00000046932 map2k6 (ENSXETG00000022954) retreg3 (ENSXETG00000014893) tubg1 (ENSXETG00000014898) ENSXETG00000041860 nploc4 (ENSXETG00000015038) #19 fscn2 (ENSXETG00000015030) #21 faap100 (ENSXETG00000015035) #20 actg1 (ENSXETG00000027641) ##22 bahcc1 (ENSXETG00000015028) #23 ENSXETG00000042421 ENSXETG00000046582 slc38a10 (ENSXETG00000015401) #25 ENSXETG00000037346 tepsin (ENSXETG00000015400) #27 cep131 (ENSXETG00000016930) #28 abo2 (ENSXETG00000015399) myadml2 (ENSXETG00000005379) pycr1 (ENSXETG00000005381) sirt7 (ENSXETG00000005388) pcyt2 (ENSXETG00000005389) npb (ENSXETG00000033774) anapc11 (ENSXETG00000035263) ENSXETG00000048030 Leishan spiny toad DUPLICATION Leishan spiny toad MODERN SPECIES 12 ENSLLEG00000028595 ENSLLEG00000028788 ENSLLEG00000028891 BARHL1 (ENSLLEG00000028903) DDX31 (ENSLLEG00000028957) GTF3C4 (ENSLLEG00000029087) ENSLLEG00000029120 SPACA9 (ENSLLEG00000029193) TSC1 (ENSLLEG00000029219) GFI1B (ENSLLEG00000029316) GTF3C5 (ENSLLEG00000029343) CEL (ENSLLEG00000029379) ENSLLEG00000029433 ENSLLEG00000029554 ENSLLEG00000029558 ENSLLEG00000029569 ##22 ENSLLEG00000029579 ENSLLEG00000029589 ENSLLEG00000029600 ENSLLEG00000029609 ENSLLEG00000029736 ENSLLEG00000029811 ENSLLEG00000029904 ENSLLEG00000029916 ENSLLEG00000029931 ENSLLEG00000029946 ENSLLEG00000029950 ENSLLEG00000029955 SURF6 (ENSLLEG00000029984) MED22 (ENSLLEG00000029997) RPL7A (ENSLLEG00000030033) Leishan spiny toad MODERN SPECIES 7 ENSLLEG00000007925 ENSLLEG00000007856 ZBTB18 (ENSLLEG00000007836) ENSLLEG00000007819 ENSLLEG00000007504 ENSLLEG00000007458 ENSLLEG00000007445 TBP (ENSLLEG00000007226) ENSLLEG00000007171 ENSLLEG00000007155 PSMB1 (ENSLLEG00000006976) ENSLLEG00000006938 ENSLLEG00000006928 FAM120B (ENSLLEG00000006784) DLL1 (ENSLLEG00000006710) ENSLLEG00000006689 ##22 ENSLLEG00000006662 ENSLLEG00000006653 ENSLLEG00000006610 GNPAT (ENSLLEG00000006280) ENSLLEG00000006089 ENSLLEG00000005891 ENSLLEG00000005860 CCR6 (ENSLLEG00000005837) ENSLLEG00000005774 ENSLLEG00000005740 ENSLLEG00000005688 ENSLLEG00000005675 ENSLLEG00000005663 NID1 (ENSLLEG00000005380) ENSLLEG00000005328 Actinopterygii ANCESTRAL SPECIES 138 ENSGT01050000244891.B ENSGT00940000158690 ENSGT00940000165400 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00950000182960.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00390000002762.a.b ENSGT00390000010052.a ENSGT00940000156701 ENSGT00390000013127.b ENSGT00940000156643 Reedfish MODERN SPECIES 2 hapstr1a (ENSECRG00000019279) GRIN2A (ENSECRG00000019325) ENSECRG00000019398 emp2 (ENSECRG00000019432) mmd2a (ENSECRG00000019461) wipi2 (ENSECRG00000019499) arpc1b (ENSECRG00000019549) arpc1a (ENSECRG00000019611) ENSECRG00000019674 kpna7 (ENSECRG00000019755) smurf1 (ENSECRG00000019815) ENSECRG00000019928 ENSECRG00000019969 RNF216 (ENSECRG00000020006) FSCN1 (ENSECRG00000020051) ##21 ACTB (ENSECRG00000011262) ##22 fbxl18 (ENSECRG00000011307) ENSECRG00000011335 slc29a4a (ENSECRG00000011361) atp5mf (ENSECRG00000011385) cpsf4 (ENSECRG00000011433) PTCD1 (ENSECRG00000011515) bud31 (ENSECRG00000011536) pdap1b (ENSECRG00000011558) shmt1 (ENSECRG00000011583) smcr8a (ENSECRG00000011612) TOP3A (ENSECRG00000011633) MIEF2 (ENSECRG00000011655) flii (ENSECRG00000011687) LLGL1 (ENSECRG00000011744) alkbh5 (ENSECRG00000011782) Neopterygii ANCESTRAL SPECIES 6 ENSGT00390000004323.b ENSGT00940000162543 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000160705.C.b ENSGT00390000002752 ENSGT00940000158127 ENSGT01050000244891.B ENSGT00940000158690 ENSGT00940000165400 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00950000182960.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00390000002762.a.b ENSGT00400000022459 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00390000013127.b Osteoglossocephalai ANCESTRAL SPECIES 186 ENSGT00940000158690 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00950000182960.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00390000002762.a.b ENSGT00400000022459 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00390000013127.b Osteoglossiformes ANCESTRAL SPECIES 283 ENSGT00940000157519.b.b ENSGT00940000159620.b.b ENSGT00390000014681 ENSGT00390000011615.A.a ENSGT00950000183157.a.a.a.d #21 ENSGT00950000182960.a.b ##22 ENSGT00950000182960.a.a.a.a ##22 ENSGT00940000160116.b #23 ENSGT00390000003070.a.a.o ENSGT00940000156691 ENSGT00390000017548.b.a ENSGT00940000161116.w.a.b ENSGT00390000007463 ENSGT01030000234586.B.a.a.b ENSGT00940000157836.a ENSGT00950000182983.A.a.a.a ENSGT00950000182961.a.a.f ENSGT00390000004169 #15 ENSGT00390000013260.C ##17 ENSGT00390000018731.f #19 Asian bonytongue MODERN SPECIES 18 ENSSFOG00015031566 SRSF1 (ENSSFOG00015026484) ENSSFOG00015010652 SYNGR2 (ENSSFOG00015028002) CANT1 (ENSSFOG00015025186) ENSSFOG00015010580 timp2a (ENSSFOG00015032547) usp36 (ENSSFOG00015010517) cyth1a (ENSSFOG00015010460) socs3b (ENSSFOG00015010403) tha1 (ENSSFOG00015025520) tha1 (ENSSFOG00015025357) ENSSFOG00015010351 FSCN2 (ENSSFOG00015010309) #21 ENSSFOG00015010279 ##22 ENSSFOG00015008310 ##22 BAHCC1 (ENSSFOG00015024385) #23 ENSSFOG00015008124 OTOP2 (ENSSFOG00015008034) USH1G (ENSSFOG00015008016) TRIM16 (ENSSFOG00015008006) ENSSFOG00015007992 ENSSFOG00015007980 KCNJ2 (ENSSFOG00015007898) MAP2K6 (ENSSFOG00015025948) BTBD17 (ENSSFOG00015030471) gprc5c (ENSSFOG00015007796) ccdc137 (ENSSFOG00015025000) #15 pde6ga (ENSSFOG00015007768) ##17 nploc4 (ENSSFOG00015007652) #19 ENSSFOG00015028293 Clupeocephala ANCESTRAL SPECIES 71 ENSGT00940000175118 ENSGT00950000182933.A.a.a ENSGT00390000015892.b ENSGT00390000002725 ENSGT01050000244894.b.b.d.b ENSGT00950000182935.B.a.d ENSGT00390000012872.a ENSGT00950000182983.A.a.b ENSGT00940000158348.e.b ENSGT00940000157948.D ENSGT00940000157519.b.b ENSGT00940000159620.b.b ENSGT00390000011615.A.a ENSGT00950000183157.a.a.a.a #21 ENSGT00950000182960.a.b ##22 ENSGT00950000182960.a.a.a.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00940000160116.b #23 ENSGT01090000260240 ENSGT00390000003070.a.a ENSGT00940000156691 ENSGT00390000017548.b.a ENSGT00940000161116.w.a ENSGT00390000007463 ENSGT00390000004428.a.a ENSGT00920000149199 ENSGT01080000257365.a.c ENSGT01030000234586.B.a.a.b Euteleosteomorpha ANCESTRAL SPECIES 120 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00950000182960.a.a.a.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000014300 ENSGT00390000018509.a ENSGT00390000002762.a.b ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000156643 ENSGT00950000182906.a.a.a ENSGT00930000151032.A.c.b ENSGT00940000167865 ENSGT00940000155335.s.b ENSGT00940000153340.A Acanthomorphata ANCESTRAL SPECIES 25 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00950000182960.a.a.a.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Cod MODERN SPECIES 120 ENSGMOG00000009683 ##22 Euacanthomorphacea ANCESTRAL SPECIES 3 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00950000183249 ENSGT00940000162394 ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00990000204057 ENSGT00940000164100.A.c.a ENSGT01100000263483.D.d ENSGT00950000182960.a.b ##22 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000167865 ENSGT00940000182552 ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 Percomorphaceae ANCESTRAL SPECIES 112 ENSGT00940000154960 ENSGT00940000156081.i ENSGT00950000182925.B.a ENSGT00390000012859 ENSGT00950000182850.a.b.b.a ENSGT00500000044989 ENSGT00390000004950 ENSGT00550000074618.b ENSGT00530000065159 ENSGT00940000155553.e.b ENSGT00940000164100.A.c.a ENSGT01100000263483.D.d ENSGT00950000182960.a.b ##22 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 Tiger tail seahorse MODERN SPECIES 624 ACTB (ENSHCOG00000010311) ##22 Percomorphaceae_B ANCESTRAL SPECIES 178 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 Ovalentaria ANCESTRAL SPECIES ENSGT00940000154535.B ENSGT00940000178300 ENSGT00950000183249 ENSGT00940000159148.b ENSGT01060000248589.A.d ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00990000204057 ENSGT00530000063725.p.f.d ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00950000182960.a.a.b.f ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 Atherinomorphae ANCESTRAL SPECIES 1 ENSGT00940000176961 ENSGT00940000154960 ENSGT00940000156081.i ENSGT00950000182925.B.a ENSGT00390000012859 ENSGT00950000182850.a.b.b.a ENSGT00500000044989 ENSGT00390000004950 ENSGT00550000074618.b ENSGT00530000065159 ENSGT00940000155553.e.b ENSGT00940000177061 ENSGT00940000164100.A.c.b.b.e.b ENSGT01100000263483.D.d.a.a.a.a.f.a.a ENSGT00950000182960.a.b ##22 ENSGT00950000182960.a.a.a.a ##22 ENSGT01100000263483.D.d.a.a.a.a.f.b.b ENSGT00940000166999.A ENSGT00940000169174 ENSGT00940000154842.a.a ENSGT00940000154779.a.b.b ENSGT00390000001485 ENSGT00940000159470 ENSGT00940000155798 ENSGT00940000159786 ENSGT00940000155852 ENSGT00940000164100.A.c.a.d.a.b.b ENSGT00390000009378 ENSGT00390000008748.a ENSGT00940000156980.b ENSGT00940000155742.a.b Oryzias ANCESTRAL SPECIES ENSGT00940000155733.a.b ENSGT00390000013127.a ENSGT00740000115744 ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b.sb ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.a.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Oryzias_a ANCESTRAL SPECIES 20 ENSGT00390000013127.a ENSGT00970000196672 ENSGT00950000183045.A.b ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b.sb ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.a.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Japanese Medaka HdrR MODERN SPECIES 22 ENSORLG00000027830 mpst (ENSORLG00000029872) mpst (ENSORLG00000013490) ENSORLG00000013514 il2rb (ENSORLG00000013522) C1QTNF6 (ENSORLG00000010706) ENSORLG00000029259 chst12a (ENSORLG00000013533) CARD11 (ENSORLG00000013537) ap5z1 (ENSORLG00000013568) mmd2a (ENSORLG00000027433) wipi2 (ENSORLG00000013601) smurf1 (ENSORLG00000013636) RNF216 (ENSORLG00000013652) FSCN1 (ENSORLG00000013664) ##21 actb2 (ENSORLG00000013676) ##22 TNRC18 (ENSORLG00000013686) slc29a4a (ENSORLG00000013699) ENSORLG00000027893 atp5mf (ENSORLG00000023475) cpsf4 (ENSORLG00000022798) shmt1 (ENSORLG00000013776) pdap1b (ENSORLG00000028511) bud31 (ENSORLG00000013809) smcr8a (ENSORLG00000013820) TOP3A (ENSORLG00000013858) cbx7a (ENSORLG00000026459) EP300 (ENSORLG00000013972) xpnpep3 (ENSORLG00000014010) st13 (ENSORLG00000014052) rbx1 (ENSORLG00000014060) Chinese medaka DUPLICATION Chinese medaka MODERN SPECIES 1989 ENSOSIG00000001453 ##22 Chinese medaka MODERN SPECIES 3139 ENSOSIG00000009594 ##22 Chinese medaka MODERN SPECIES 907 ENSOSIG00000008224 ENSOSIG00000008225 mief1 (ENSOSIG00000008226) ENSOSIG00000008227 ENSOSIG00000008228 ube2ib (ENSOSIG00000008229) ENSOSIG00000008230 C1QTNF6 (ENSOSIG00000008231) chst12a (ENSOSIG00000008232) CARD11 (ENSOSIG00000008236) ENSOSIG00000008285 wipi2 (ENSOSIG00000008296) smurf1 (ENSOSIG00000008452) ENSOSIG00000008771 FSCN1 (ENSOSIG00000009275) ##21 ENSOSIG00000009285 ##22 ENSOSIG00000009378 slc29a4a (ENSOSIG00000009387) atp5mf (ENSOSIG00000009393) cpsf4 (ENSOSIG00000009394) shmt1 (ENSOSIG00000009422) pdap1b (ENSOSIG00000009568) bud31 (ENSOSIG00000009569) smcr8a (ENSOSIG00000009570) TOP3A (ENSOSIG00000009574) Oryzias_b ANCESTRAL SPECIES 30 ENSGT01030000234887 ENSGT00740000115744 ENSGT00510000046773.a.b.c.a.f ENSGT00510000046773.a.b.c.a.e ENSGT00550000075088.a.b ENSGT00940000177422 ENSGT00940000160396 ENSGT00940000156614.b.sb ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.a.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Indian medaka MODERN SPECIES 9 ENSOMEG00000004519 mpst (ENSOMEG00000004526) ENSOMEG00000004607 mpst (ENSOMEG00000004645) ENSOMEG00000004671 ENSOMEG00000004707 C1QTNF6 (ENSOMEG00000004726) chst12a (ENSOMEG00000004762) CARD11 (ENSOMEG00000004885) ap5z1 (ENSOMEG00000001000) mmd2a (ENSOMEG00000004957) wipi2 (ENSOMEG00000004986) smurf1 (ENSOMEG00000005021) RNF216 (ENSOMEG00000005042) FSCN1 (ENSOMEG00000005059) ##21 ACTB (ENSOMEG00000000111) ##22 TNRC18 (ENSOMEG00000005103) slc29a4a (ENSOMEG00000005135) atp5mf (ENSOMEG00000005152) cpsf4 (ENSOMEG00000005176) shmt1 (ENSOMEG00000005205) pdap1b (ENSOMEG00000005224) bud31 (ENSOMEG00000005234) smcr8a (ENSOMEG00000005241) TOP3A (ENSOMEG00000005276) cbx7a (ENSOMEG00000005289) EP300 (ENSOMEG00000005385) xpnpep3 (ENSOMEG00000005454) st13 (ENSOMEG00000005496) rbx1 (ENSOMEG00000005517) ENSOMEG00000005555 Javanese ricefish MODERN SPECIES 22 ENSOJAG00000015889 ENSOJAG00000015880 mpst (ENSOJAG00000015874) mpst (ENSOJAG00000015869) ENSOJAG00000015843 ENSOJAG00000015832 C1QTNF6 (ENSOJAG00000015826) chst12a (ENSOJAG00000015821) CARD11 (ENSOJAG00000015715) ap5z1 (ENSOJAG00000015666) mmd2a (ENSOJAG00000015657) wipi2 (ENSOJAG00000015249) smurf1 (ENSOJAG00000013851) RNF216 (ENSOJAG00000013681) FSCN1 (ENSOJAG00000013632) ##21 ACTB (ENSOJAG00000013436) ##22 ENSOJAG00000013405 slc29a4a (ENSOJAG00000013395) atp5mf (ENSOJAG00000013368) cpsf4 (ENSOJAG00000013354) shmt1 (ENSOJAG00000013039) pdap1b (ENSOJAG00000013025) bud31 (ENSOJAG00000012994) smcr8a (ENSOJAG00000012988) cbx7a (ENSOJAG00000012266) EP300 (ENSOJAG00000011158) xpnpep3 (ENSOJAG00000010994) st13 (ENSOJAG00000010970) rbx1 (ENSOJAG00000010942) ENSOJAG00000010896 rangap1a (ENSOJAG00000010423) Cyprinodontiformes ANCESTRAL SPECIES 88 ENSGT00940000177061 ENSGT00940000164100.A.c.b.b.e.b ENSGT01100000263483.D.d.a.a.a.a.f.a.a.a ENSGT00950000182960.a.b ##22 ENSGT00950000182960.a.a.a.a ##22 ENSGT01100000263483.D.d.a.a.a.a.f.b.b ENSGT00940000166999.A ENSGT00940000169174 Cyprinodontoidei ANCESTRAL SPECIES 289 ENSGT00950000182960.a.b ##22 ENSGT00950000182960.a.a.a.a ##22 Poeciliinae ANCESTRAL SPECIES 189 ENSGT00950000182960.a.b.m ##22 ENSGT00950000182960.a.a.a.a ##22 Poecilia ANCESTRAL SPECIES 250 ENSGT00950000182960.a.b.m ##22 ENSGT00950000182960.a.a.a.a ##22 Guppy DUPLICATION Guppy MODERN SPECIES 461 ENSPREG00000017286 ENSPREG00000017274 pik3r1 (ENSPREG00000017250) ENSPREG00000017210 ENSPREG00000017145 ENSPREG00000017114 ENSPREG00000017099 ENSPREG00000017086 ENSPREG00000017071 ENSPREG00000017045 ENSPREG00000017028 ENSPREG00000017019 ENSPREG00000017000 OARD1 (ENSPREG00000016941) ENSPREG00000016913 ENSPREG00000016846 ##22 ENSPREG00000016826 ENSPREG00000016816 ENSPREG00000016801 dapk1 (ENSPREG00000016685) ctsla (ENSPREG00000016624) ENSPREG00000016197 ENSPREG00000016121 fbp2 (ENSPREG00000016101) fbp1a (ENSPREG00000016077) ENSPREG00000016036 ENSPREG00000016006 dmrt1 (ENSPREG00000014224) dmrt3a (ENSPREG00000014006) dmrt2a (ENSPREG00000013995) SMARCA2 (ENSPREG00000013800) Guppy MODERN SPECIES 442 ENSPREG00000006079 setb (ENSPREG00000006032) ENSPREG00000005998 MMP11 (ENSPREG00000005982) PPP6C (ENSPREG00000005967) SCAI (ENSPREG00000005929) ENSPREG00000005880 EFNA5 (ENSPREG00000005858) PIGO (ENSPREG00000005809) stoml2 (ENSPREG00000005792) ENSPREG00000005759 ENSPREG00000005616 ENSPREG00000005565 ENSPREG00000005524 ENSPREG00000005507 ##22 ENSPREG00000005501 ##22 ENSPREG00000005473 ENSPREG00000001901 ##22 ENSPREG00000001622 ENSPREG00000001498 gadd45gb.1 (ENSPREG00000001461) ENSPREG00000001446 ENSPREG00000001415 c7b (ENSPREG00000001330) c6 (ENSPREG00000001260) rgs7bpb (ENSPREG00000001248) ENSPREG00000001238 ENSPREG00000001200 vldlr (ENSPREG00000001142) rassf6 (ENSPREG00000001087) ENSPREG00000000908 Ovalentaria_B ANCESTRAL SPECIES 100 ENSGT00530000063725.p.f.c.b ENSGT01100000263598 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 Pomacentridae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a ##22 Bicolor damselfish MODERN SPECIES 2829 ENSSPAG00000007705 ##22 Pomacentridae_A ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a ##22 Amphiprion ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a ##22 Orange clownfish MODERN SPECIES 21 dcaf13 (ENSAPEG00000021156) ENSAPEG00000021182 ENSAPEG00000021255 DCSTAMP (ENSAPEG00000021270) dpys (ENSAPEG00000021338) ENSAPEG00000021690 ENSAPEG00000021712 ENSAPEG00000021729 DCSTAMP (ENSAPEG00000021782) dpys (ENSAPEG00000021792) zfpm2a (ENSAPEG00000021820) ENSAPEG00000021844 oxr1b (ENSAPEG00000021874) sqlea (ENSAPEG00000021928) ENSAPEG00000021950 ENSAPEG00000021968 ##22 ENSAPEG00000021975 rbm12bb (ENSAPEG00000022079) ENSAPEG00000022115 upp1 (ENSAPEG00000022138) stmn2b (ENSAPEG00000022163) HEY1 (ENSAPEG00000022181) fam8a1b (ENSAPEG00000022206) ATXN1 (ENSAPEG00000022436) ITGA8 (ENSAPEG00000022470) mindy3 (ENSAPEG00000022645) ENSAPEG00000022694 ENSAPEG00000022714 steap4 (ENSAPEG00000022725) ENSAPEG00000022772 ENSAPEG00000022811 Spiny chromis MODERN SPECIES 3140 ENSAPOG00000007631 ENSAPOG00000007657 ##22 Cichlidae ANCESTRAL SPECIES 270 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 Pseudocrenilabrinae ANCESTRAL SPECIES 3 ENSGT00940000163679 ENSGT00950000183157.a.a.b.d ##21 ENSGT00940000163566.a.a ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f.d ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00530000063725.p.f.c.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00990000204818.a ENSGT00390000002886.a.a.a ENSGT00940000165949 Pseudocrenilabrinae_A ANCESTRAL SPECIES 5 ENSGT00950000183157.a.a.b.d ##21 ENSGT00940000163566.a.a ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f.d.h ENSGT00530000063725.p.f.c.a ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b.c #22 ENSGT00530000063725.p.f.c.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b.a ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00990000204818.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a Haplochromini ANCESTRAL SPECIES 3 ENSGT00950000183157.a.a.b.d ##21 ENSGT00940000163566.a.a ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f.d.h ENSGT00530000063725.p.f.c.a ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b.c #22 ENSGT00530000063725.p.f.c.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b.a ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00990000204818.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a Haplochromini_A ANCESTRAL SPECIES 2 ENSGT00940000163566.a.a ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f.d.h ENSGT00530000063725.p.f.c.a ENSGT00530000063725.p.f.d.g.b ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b.c #22 ENSGT00530000063725.p.f.c.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b.a ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00990000204818.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a Haplochromini_B ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a ##22 Zebra mbuna MODERN SPECIES 1109 ENSMZEG00005013242 VAV1 (ENSMZEG00005013190) UBL5 (ENSMZEG00005013172) pin1 (ENSMZEG00005013165) pin1 (ENSMZEG00005013158) ENSMZEG00005013149 ENSMZEG00005013139 ENSMZEG00005013075 ENSMZEG00005013062 ENSMZEG00005013027 KLHL10 (ENSMZEG00005013011) ENSMZEG00005012969 #22 ENSMZEG00005012869 ENSMZEG00005012824 ENSMZEG00005012791 ##22 ACTB (ENSMZEG00005012760) ##22 PTCD1 (ENSMZEG00005012722) zgc:112980 (ENSMZEG00005012703) smcr8b (ENSMZEG00005012693) mief2 (ENSMZEG00005012679) alkbh5 (ENSMZEG00005012673) MYO15A (ENSMZEG00005012550) ENSMZEG00005012502 ENSMZEG00005012457 hapstr1b (ENSMZEG00005012443) abcg2b (ENSMZEG00005012411) ENSMZEG00005012398 ENSMZEG00005012389 arpc1a (ENSMZEG00005012370) arpc1b (ENSMZEG00005012346) MMD2 (ENSMZEG00005012327) P. nyererei MODERN SPECIES 560 ENSPNYG00000019869 ##22 ACTG1 (ENSPNYG00000019880) #22 ENSPNYG00000019906 ENSPNYG00000019919 ENSPNYG00000019942 ##22 fbxl18 (ENSPNYG00000019957) PTCD1 (ENSPNYG00000019993) ENSPNYG00000020019 smcr8b (ENSPNYG00000020109) mief2 (ENSPNYG00000020121) alkbh5 (ENSPNYG00000020156) MYO15A (ENSPNYG00000020186) ENSPNYG00000020316 ENSPNYG00000020364 hapstr1b (ENSPNYG00000020374) abcg2c (ENSPNYG00000020405) Nile tilapia DUPLICATION Nile tilapia MODERN SPECIES 3 ENSONIG00000000241 ENSONIG00000032943 ENSONIG00000008291 ENSONIG00000029584 ENSONIG00000036319 ENSONIG00000034003 ENSONIG00000030665 ENSONIG00000037956 ENSONIG00000034620 ENSONIG00000006674 ENSONIG00000020396 ENSONIG00000036199 ENSONIG00000034054 ENSONIG00000028403 ENSONIG00000012313 ACTB (ENSONIG00000014259) ##22 ENSONIG00000032674 ENSONIG00000034815 zgc:113274 (ENSONIG00000032281) ENSONIG00000027235 ENSONIG00000035872 ENSONIG00000042907 dapk1 (ENSONIG00000014229) ctsla (ENSONIG00000014226) fbp1a (ENSONIG00000014217) ENSONIG00000014211 ENSONIG00000036306 cfap157 (ENSONIG00000014207) dmrt1 (ENSONIG00000014201) dmrt3a (ENSONIG00000030065) dmrt2 (ENSONIG00000014197) Nile tilapia MODERN SPECIES 18 ENSONIG00000000181 rdh8b (ENSONIG00000000184) OLFM2 (ENSONIG00000000204) MFAP4 (ENSONIG00000000210) TRIP10 (ENSONIG00000000213) ENSONIG00000000220 VAV1 (ENSONIG00000000226) UBL5 (ENSONIG00000000251) pin1 (ENSONIG00000027273) ENSONIG00000000258 ENSONIG00000036434 ENSONIG00000040827 ENSONIG00000031994 ENSONIG00000033301 ENSONIG00000031015 ACTB (ENSONIG00000003148) ##22 ACTG1 (ENSONIG00000033329) #22 ENSONIG00000036066 #22 ENSONIG00000003153 ENSONIG00000025166 fbxl18 (ENSONIG00000003165) PTCD1 (ENSONIG00000003168) zgc:112980 (ENSONIG00000003172) ENSONIG00000032900 smcr8b (ENSONIG00000003176) mief2 (ENSONIG00000003179) alkbh5 (ENSONIG00000003181) MYO15A (ENSONIG00000003182) ENSONIG00000003190 ENSONIG00000030100 hapstr1b (ENSONIG00000003202) Percomorphaceae_C ANCESTRAL SPECIES 267 ENSGT00950000182960.a.a.a.a ##22 ENSGT00940000165270 Eupercaria ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a ##22 Tetraodontidae ANCESTRAL SPECIES 41 ENSGT00530000063801.a.b ENSGT01030000234789 ENSGT00940000160179 ENSGT00390000013127.a ENSGT00740000115744 ENSGT00510000046773.a.b.d ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00940000160396 ENSGT00940000156614.b ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.a.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Fugu DUPLICATION Fugu MODERN SPECIES 8 ENSTRUG00000029257 ttyh3b (ENSTRUG00000014928) ENSTRUG00000014909 ENSTRUG00000014882 ##21 ENSTRUG00000029471 ENSTRUG00000032311 OLFM2 (ENSTRUG00000013986) ENSTRUG00000013979 TRIP10 (ENSTRUG00000013881) ENSTRUG00000013754 VAV1 (ENSTRUG00000013652) UBL5 (ENSTRUG00000013643) pin1 (ENSTRUG00000013606) ENSTRUG00000026524 ENSTRUG00000025485 ACTB (ENSTRUG00000020378) ##22 fbxl18 (ENSTRUG00000013524) PTCD1 (ENSTRUG00000013471) zgc:112980 (ENSTRUG00000020136) ENSTRUG00000013435 mief2 (ENSTRUG00000024936) alkbh5 (ENSTRUG00000013324) ENSTRUG00000012978 hapstr1b (ENSTRUG00000012950) abcg2b (ENSTRUG00000012715) ENSTRUG00000020587 ENSTRUG00000028683 arpc1a (ENSTRUG00000012566) radil (ENSTRUG00000012208) foxk1 (ENSTRUG00000012135) ENSTRUG00000012011 Fugu MODERN SPECIES 17 napsa (ENSTRUG00000001310) mief1 (ENSTRUG00000021806) ENSTRUG00000023803 TST (ENSTRUG00000001660) mpst (ENSTRUG00000001668) ENSTRUG00000025136 ENSTRUG00000021244 ENSTRUG00000031320 chst12a (ENSTRUG00000025406) ENSTRUG00000002024 ap5z1 (ENSTRUG00000003903) mmd2a (ENSTRUG00000004208) wipi2 (ENSTRUG00000004292) smurf1 (ENSTRUG00000004668) FSCN1 (ENSTRUG00000005218) ##21 ACTB (ENSTRUG00000005447) ##22 TNRC18 (ENSTRUG00000005638) slc29a4a (ENSTRUG00000005833) atp5mf (ENSTRUG00000003441) cpsf4 (ENSTRUG00000030405) shmt1 (ENSTRUG00000003948) pdap1b (ENSTRUG00000024967) bud31 (ENSTRUG00000023390) smcr8a (ENSTRUG00000006263) TOP3A (ENSTRUG00000006332) cbx7a (ENSTRUG00000023605) EP300 (ENSTRUG00000006616) xpnpep3 (ENSTRUG00000007415) st13 (ENSTRUG00000007578) rbx1 (ENSTRUG00000007816) ENSTRUG00000007863 Eupecaria_A ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a ##22 Ballan wrasse MODERN SPECIES 753 ENSLBEG00000013074 ACTB (ENSLBEG00000014152) ##22 ENSLBEG00000017905 ENSLBEG00000017941 ENSLBEG00000017965 ENSLBEG00000017980 Eupecaria_B ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a ##22 Perciformes ANCESTRAL SPECIES 2 ENSGT00940000163679 ENSGT00950000183157.a.a.b.d ##21 ENSGT00940000163566.a.a ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT01100000263598 ENSGT00950000182960.a.a.a.a ##22 ENSGT00990000204057 ENSGT00530000063725.p.f ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000162658.b ENSGT00940000173775 ENSGT00940000165949 Perciformes_a ANCESTRAL SPECIES ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00990000204057 ENSGT00530000063725.p.f ENSGT00950000182960.a.a.b.e.b ##22 ENSGT01100000263598 ENSGT00950000182960.a.a.a.a ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.b ENSGT00940000157972.d ENSGT00940000159293 Channel bull blenny DUPLICATION Channel bull blenny MODERN SPECIES glb1 (ENSCGOG00000010967) ENSCGOG00000010943 ENSCGOG00000010940 ENSCGOG00000010928 ccdc86 (ENSCGOG00000010924) rnf24 (ENSCGOG00000010910) smox (ENSCGOG00000010900) FBXO41 (ENSCGOG00000010829) ENSCGOG00000010826 mogs (ENSCGOG00000010823) pdcd4a (ENSCGOG00000010788) ENSCGOG00000010786 MXD4 (ENSCGOG00000010783) ENSCGOG00000010781 ENSCGOG00000010779 ENSCGOG00000009661 ##22 fbxl18 (ENSCGOG00000009638) PTCD1 (ENSCGOG00000009634) zgc:112980 (ENSCGOG00000009597) smcr8b (ENSCGOG00000009595) mief2 (ENSCGOG00000009590) alkbh5 (ENSCGOG00000009585) ENSCGOG00000009575 ENSCGOG00000007729 hapstr1b (ENSCGOG00000007685) abcg2b (ENSCGOG00000007674) ENSCGOG00000007672 ENSCGOG00000007670 arpc1b (ENSCGOG00000007140) MMD2 (ENSCGOG00000007124) radil (ENSCGOG00000007121) Channel bull blenny MODERN SPECIES 23 PRDM6 (ENSCGOG00000018591) ENSCGOG00000018593 ENSCGOG00000018595 PPIC (ENSCGOG00000018597) SNX2 (ENSCGOG00000018607) ENSCGOG00000018852 sncaip (ENSCGOG00000018853) ENSCGOG00000018855 ENSCGOG00000018858 ENSCGOG00000018859 ENSCGOG00000018864 ENSCGOG00000018868 zgc:158343 (ENSCGOG00000018871) ENSCGOG00000018874 ENSCGOG00000018877 ACTB (ENSCGOG00000018964) ##22 ENSCGOG00000022633 ENSCGOG00000022635 ENSCGOG00000022638 ##22 ENSCGOG00000022643 pik3r1 (ENSCGOG00000022701) ENSCGOG00000023401 ENSCGOG00000023406 srp19 (ENSCGOG00000023477) ENSCGOG00000023479 sms (ENSCGOG00000000457) DMTN (ENSCGOG00000000485) ENSCGOG00000000497 ENSCGOG00000000510 mak16 (ENSCGOG00000000547) ENSCGOG00000000624 Channel bull blenny MODERN SPECIES 23 PPIC (ENSCGOG00000018597) SNX2 (ENSCGOG00000018607) ENSCGOG00000018852 sncaip (ENSCGOG00000018853) ENSCGOG00000018855 ENSCGOG00000018858 ENSCGOG00000018859 ENSCGOG00000018864 ENSCGOG00000018868 zgc:158343 (ENSCGOG00000018871) ENSCGOG00000018874 ENSCGOG00000018877 ACTB (ENSCGOG00000018964) ##22 ENSCGOG00000022633 ENSCGOG00000022635 ENSCGOG00000022638 ##22 ENSCGOG00000022643 pik3r1 (ENSCGOG00000022701) ENSCGOG00000023401 ENSCGOG00000023406 srp19 (ENSCGOG00000023477) ENSCGOG00000023479 sms (ENSCGOG00000000457) DMTN (ENSCGOG00000000485) ENSCGOG00000000497 ENSCGOG00000000510 mak16 (ENSCGOG00000000547) ENSCGOG00000000624 ENSCGOG00000000629 ENSCGOG00000000670 ENSCGOG00000000808 Percomorphaceae_D ANCESTRAL SPECIES 201 ENSGT00950000182960.a.a.a.a ##22 ENSGT00940000165270 Anabantaria ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a ##22 Anabantoidei ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a ##22 Climbing perch MODERN SPECIES 22 ENSATEG00000011931 ENSATEG00000028347 ENSATEG00000027413 ENSATEG00000025792 ##22 ENSATEG00000025922 ENSATEG00000026099 ENSATEG00000027327 ENSATEG00000028380 ENSATEG00000012080 ENSATEG00000012086 ENSATEG00000026403 ENSATEG00000012163 ENSATEG00000012135 ENSATEG00000012144 ENSATEG00000011994 ##22 ENSATEG00000012201 ##22 ENSATEG00000027381 ##22 ENSATEG00000012250 ##22 ENSATEG00000012313 ENSATEG00000012423 ENSATEG00000012439 ENSATEG00000012442 ENSATEG00000028289 ENSATEG00000012492 ENSATEG00000012562 ENSATEG00000012588 ENSATEG00000012604 ENSATEG00000012637 ENSATEG00000029749 ENSATEG00000012689 ENSATEG00000012742 Carangaria ANCESTRAL SPECIES 185 ENSGT00950000182960.a.a.a.a ##22 ENSGT00940000165270 Pleuronectoidei ANCESTRAL SPECIES 2 ENSGT01030000234887 ENSGT00740000115744 ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000160705.C.b ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.a.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Turbot MODERN SPECIES 10 ENSSMAG00000034982 ENSSMAG00000036112 ENSSMAG00000033439 ENSSMAG00000006909 ENSSMAG00000037129 ENSSMAG00000006866 ENSSMAG00000006824 ap5z1 (ENSSMAG00000006802) ENSSMAG00000006771 wipi2 (ENSSMAG00000006740) ENSSMAG00000006644 ENSSMAG00000006623 RNF216 (ENSSMAG00000006611) FSCN1 (ENSSMAG00000006599) ##21 ENSSMAG00000006528 ACTB (ENSSMAG00000006565) ##22 slc29a4a (ENSSMAG00000006475) ENSSMAG00000006396 cpsf4 (ENSSMAG00000006374) shmt1 (ENSSMAG00000006361) ENSSMAG00000006267 bud31 (ENSSMAG00000034362) ENSSMAG00000006220 ENSSMAG00000006179 cbx7a (ENSSMAG00000006170) ENSSMAG00000006120 xpnpep3 (ENSSMAG00000006101) st13 (ENSSMAG00000006090) rbx1 (ENSSMAG00000005989) ENSSMAG00000005932 RANGAP1 (ENSSMAG00000005903) Tongue sole DUPLICATION Tongue sole MODERN SPECIES 113 ENSCSEG00000019285 ##22 Tongue sole MODERN SPECIES 398 SLC12A2 (ENSCSEG00000009247) GRAMD2B (ENSCSEG00000009279) ZNF608 (ENSCSEG00000009292) CEP120 (ENSCSEG00000009330) PRDM6 (ENSCSEG00000009398) PPIC (ENSCSEG00000009434) SNX2 (ENSCSEG00000009634) ENSCSEG00000009696 ENSCSEG00000009704 sncaip (ENSCSEG00000009716) ENSCSEG00000009724 ENSCSEG00000009736 ENSCSEG00000009762 ENSCSEG00000009772 ENSCSEG00000009777 ##22 ACTB (ENSCSEG00000009782) ##22 ENSCSEG00000009792 ENSCSEG00000009802 ENSCSEG00000009812 ENSCSEG00000009823 ENSCSEG00000009832 ENSCSEG00000009834 ENSCSEG00000009838 ENSCSEG00000009850 pik3r1 (ENSCSEG00000009859) srp19 (ENSCSEG00000010039) ENSCSEG00000010048 mak16 (ENSCSEG00000010069) ENSCSEG00000010102 ENSCSEG00000010141 ENSCSEG00000010156 Tongue sole MODERN SPECIES 398 nudt12 (ENSCSEG00000009231) SLC12A2 (ENSCSEG00000009247) GRAMD2B (ENSCSEG00000009279) ZNF608 (ENSCSEG00000009292) CEP120 (ENSCSEG00000009330) PRDM6 (ENSCSEG00000009398) PPIC (ENSCSEG00000009434) SNX2 (ENSCSEG00000009634) ENSCSEG00000009696 ENSCSEG00000009704 sncaip (ENSCSEG00000009716) ENSCSEG00000009724 ENSCSEG00000009736 ENSCSEG00000009762 ENSCSEG00000009772 ENSCSEG00000009777 ##22 ACTB (ENSCSEG00000009782) ##22 ENSCSEG00000009792 ENSCSEG00000009802 ENSCSEG00000009812 ENSCSEG00000009823 ENSCSEG00000009832 ENSCSEG00000009834 ENSCSEG00000009838 ENSCSEG00000009850 pik3r1 (ENSCSEG00000009859) srp19 (ENSCSEG00000010039) ENSCSEG00000010048 mak16 (ENSCSEG00000010069) ENSCSEG00000010102 ENSCSEG00000010141 Protacanthopterygii ANCESTRAL SPECIES 154 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.a.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000156643.f ENSGT00940000156643.e ENSGT00950000182906.a.a.a ENSGT00930000151032.A.c.b ENSGT00940000155335.s.b ENSGT00940000153340.A Northern pike MODERN SPECIES 10 ENSELUG00000032196 ENSELUG00000014282 ENSELUG00000014292 rpusd1 (ENSELUG00000014307) gng13b (ENSELUG00000014327) traf7 (ENSELUG00000014361) CASKIN1 (ENSELUG00000001621) prpsap2 (ENSELUG00000014534) ENSELUG00000014556 grapa (ENSELUG00000029918) EPN2 (ENSELUG00000011145) b9d1 (ENSELUG00000011213) ENSELUG00000001600 RNF216 (ENSELUG00000011346) FSCN1 (ENSELUG00000011363) ##21 ACTB (ENSELUG00000011375) ##22 ENSELUG00000011437 #23 slc29a4a (ENSELUG00000011467) atp5mf (ENSELUG00000011473) cpsf4 (ENSELUG00000011481) pdap1b (ENSELUG00000011601) bud31 (ENSELUG00000011629) ENSELUG00000011716 ENSELUG00000011657 flii (ENSELUG00000011761) TOP3A (ENSELUG00000011817) smcr8a (ENSELUG00000011865) shmt1 (ENSELUG00000011924) ENSELUG00000011939 ENSELUG00000029433 ENSELUG00000029264 Salmoninae ANCESTRAL SPECIES 415 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.a.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00390000014300 ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000156643.f ENSGT00940000156643.e ENSGT00950000182906.a.a.a ENSGT00930000151032.A.c.b ENSGT00940000155335.s.b ENSGT00940000153340.A ENSGT00390000001979 Huchen MODERN SPECIES 12053 ENSHHUG00000012922 ##22 Salmoninae_a ANCESTRAL SPECIES 115 ENSGT00390000015360.c ENSGT00940000165827 ENSGT00940000156666.m.a ENSGT00940000160079 ENSGT00940000157239.h.a.a ENSGT00940000156254.o.b ENSGT00940000157932.m.a ENSGT00950000182803.A.a.a.c.a.a.a ENSGT00940000158025.a.a.b.i ENSGT00940000157022 ENSGT00530000064157.b ENSGT01060000248954 ENSGT00510000048339 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.b.f.b ##22 ENSGT00940000157099.o ENSGT00950000182898.a.b ENSGT00940000165557.l ENSGT00940000155520.yb ENSGT00940000165557.m.a ENSGT00940000155520.xb.a ENSGT00390000014300 ENSGT00390000002762.a.b ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000156643.e ENSGT00950000182906.a.a.a ENSGT00930000151032.A.c.b ENSGT00940000167865.c Salmo ANCESTRAL SPECIES 277 ENSGT00940000158025.a.a.b.i ENSGT00940000157022 ENSGT01060000248954.d ENSGT00510000048339 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.a.a ##22 River trout MODERN SPECIES 7 ENSSTUG00000034608 adnpa (ENSSTUG00000034635) BCL2L1 (ENSSTUG00000034657) gata1a (ENSSTUG00000034673) HCFC1 (ENSSTUG00000034680) ENSSTUG00000034912 tfe3b (ENSSTUG00000034951) cxxc1b (ENSSTUG00000035005) mbd1b (ENSSTUG00000035673) ccdc120b (ENSSTUG00000035764) comtb (ENSSTUG00000035786) grm6b (ENSSTUG00000035821) traip (ENSSTUG00000035875) mon1a (ENSSTUG00000035963) ENSSTUG00000035987 ENSSTUG00000036057 ##22 camkvb (ENSSTUG00000036070) SEMA3F (ENSSTUG00000036160) bhlhe40 (ENSSTUG00000037370) ITPR1 (ENSSTUG00000034046) setmar (ENSSTUG00000034728) ENSSTUG00000034740 lrrn1 (ENSSTUG00000034747) ENSSTUG00000034758 ENSSTUG00000034824 arl6ip5a (ENSSTUG00000034827) FRMD4B (ENSSTUG00000034835) mitfa (ENSSTUG00000034903) zgc:113054 (ENSSTUG00000034952) foxp1b (ENSSTUG00000034974) gpr27 (ENSSTUG00000035129) Atlantic salmon MODERN SPECIES 22 ENSSSAG00000092671 ENSSSAG00000112857 ENSSSAG00000086461 ENSSSAG00000112557 ACPM (ENSSSAG00000092661) ENSSSAG00000104216 ENSSSAG00000098504 ENSSSAG00000104173 ENSSSAG00000119943 ENSSSAG00000114814 ENSSSAG00000108000 ENSSSAG00000061614 ENSSSAG00000087505 RNF216 (ENSSSAG00000112468) ENSSSAG00000086226 ##21 ACTB (ENSSSAG00000116649) ##22 ENSSSAG00000120146 ENSSSAG00000108467 ENSSSAG00000121341 ENSSSAG00000081819 ENSSSAG00000101116 ENSSSAG00000109260 ENSSSAG00000066902 ENSSSAG00000082623 ENSSSAG00000090142 ENSSSAG00000084822 ENSSSAG00000082588 ENSSSAG00000086189 ENSSSAG00000090232 ENSSSAG00000119671 ENSSSAG00000088338 Oncorhynchus ANCESTRAL SPECIES 82 ENSGT00390000015360.c.c ENSGT00940000165827 ENSGT00940000156666.m.a ENSGT00940000160079 ENSGT00940000157239.h.a.a ENSGT00940000156254.o.b ENSGT00940000157932.m.a ENSGT00950000182803.A.a.a.c.a.a.a ENSGT00940000158025.a.a.b.i ENSGT00940000157022 ENSGT00530000064157.b.j ENSGT01060000248954.e.a ENSGT00510000048339 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.b.f.b ##22 ENSGT00940000157099.o ENSGT00950000182898.a.b ENSGT00940000165557.m.a ENSGT00940000155520.xb.a ENSGT00390000014300.k ENSGT00390000002762.a.b.f.a ENSGT00390000014300.l ENSGT00390000002762.a.b.f.b ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000156643.e.d ENSGT00940000156643.e.c ENSGT00950000182906.a.a.a ENSGT00930000151032.A.c.b Oncorhynchus_a ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a ##22 Chinook salmon MODERN SPECIES 1719 ACTB (ENSOTSG00005026722) ##22 Rainbow trout DUPLICATION Rainbow trout MODERN SPECIES 28 gata1a (ENSOMYG00000022604) ENSOMYG00000022484 ENSOMYG00000073696 ENSOMYG00000022325 tfe3b (ENSOMYG00000022308) ENSOMYG00000021738 mbd1b (ENSOMYG00000021578) ENSOMYG00000064320 ccdc120b (ENSOMYG00000021563) ENSOMYG00000021549 comtb (ENSOMYG00000021507) grm6b (ENSOMYG00000021486) traip (ENSOMYG00000021463) mon1a (ENSOMYG00000021436) MST1R (ENSOMYG00000021410) ENSOMYG00000021362 ##22 ENSOMYG00000073574 camkvb (ENSOMYG00000021343) ENSOMYG00000019619 bhlhe40 (ENSOMYG00000019293) ENSOMYG00000019279 ENSOMYG00000018924 ENSOMYG00000058313 setmar (ENSOMYG00000018797) lrrn1 (ENSOMYG00000018787) ENSOMYG00000018779 praf3 (ENSOMYG00000018762) FRMD4B (ENSOMYG00000018705) mitfa (ENSOMYG00000018633) ENSOMYG00000018605 foxp1b (ENSOMYG00000018060) Rainbow trout MODERN SPECIES 81 ENSOMYG00000056593 ENSOMYG00000061238 ENSOMYG00000035428 RNF216 (ENSOMYG00000065108) ENSOMYG00000070742 ##21 ACTB (ENSOMYG00000076844) ##22 ENSOMYG00000051193 slc29a4a (ENSOMYG00000072420) atp5mf (ENSOMYG00000059843) ENSOMYG00000069179 cpsf4 (ENSOMYG00000060344) ENSOMYG00000037117 shmt1 (ENSOMYG00000061025) smcr8a (ENSOMYG00000071328) TOP3A (ENSOMYG00000056459) flii (ENSOMYG00000057018) ENSOMYG00000065959 LLGL1 (ENSOMYG00000071339) MYO15A (ENSOMYG00000073405) drg2 (ENSOMYG00000075470) gfer (ENSOMYG00000075028) Otomorpha ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a ##22 Otophysi ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a ##22 Cyprinoidei ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a ##22 Cyprininae ANCESTRAL SPECIES 117 ENSGT00940000166918.b ENSGT00390000002127.b.a ENSGT00730000110943.A.b ENSGT01050000244893.c.a.a.b.h ENSGT01030000234842 ENSGT00940000155217.o.a.b ENSGT00940000156323.c.b.b ENSGT00940000167193.g ENSGT00940000156222.a.b.d ENSGT00390000002886.a.d ENSGT00940000165949.c.b ENSGT00950000183157.a.a.b.p.b ##21 ENSGT00950000182960.a.a.b.d.a.a ##22 ENSGT00390000015109.d ENSGT01030000234592.A.a.a.a.b.c.b.b ENSGT00950000182960.a.a.a.a ##22 ENSGT00390000015109.c ENSGT01030000234592.A.a.a.a.b.c.a ENSGT00950000182898.a.b.p ENSGT00400000022459.e ENSGT00390000010052.b.a ENSGT00390000013127.b.g ENSGT00390000009298.f ENSGT00940000155335.s.a ENSGT00950000182935.B.b.d.b.b ENSGT00940000156666.jc ENSGT00390000016550.g ENSGT00940000156254.o.a.b ENSGT00940000159416.e ENSGT00940000157932.m.b.b ENSGT00940000158025.a.b.d Goldfish MODERN SPECIES zgc:136472 (ENSCARG00000028831) gng13a (ENSCARG00000028819) chtf18 (ENSCARG00000028754) ENSCARG00000028368 plk1 (ENSCARG00000028289) ndufab1a (ENSCARG00000028263) ENSCARG00000028244 ENSCARG00000028240 ENSCARG00000028234 prkcba (ENSCARG00000028187) tlr2 (ENSCARG00000028181) socs1b (ENSCARG00000028177) GRIN2A (ENSCARG00000028049) hapstr1b (ENSCARG00000027998) FSCN1 (ENSCARG00000027983) ##21 B-actin (ENSCARG00000027966) ##22 fbxl18 (ENSCARG00000027957) ENSCARG00000027951 zgc:112980 (ENSCARG00000027908) mief2 (ENSCARG00000027888) alkbh5 (ENSCARG00000027876) syngr3b (ENSCARG00000027857) CACNA1H (ENSCARG00000027752) grapb (ENSCARG00000027726) FAM83G (ENSCARG00000027695) SLC5A10 (ENSCARG00000027618) ENSCARG00000027605 dnajb14 (ENSCARG00000027554) RPL24 (ENSCARG00000027519) ENSCARG00000027511 cep97 (ENSCARG00000027486) Characiphysae ANCESTRAL SPECIES ENSGT00950000182960.a.a.a.a ##22 Channel catfish DUPLICATION Channel catfish MODERN SPECIES 17 ACTB (ENSIPUG00000023978) ##22 olfml2ba (ENSIPUG00000023975) ATF6 (ENSIPUG00000023973) rxrgb (ENSIPUG00000023971) lmx1a (ENSIPUG00000023967) SELP (ENSIPUG00000023961) ENSIPUG00000023956 sele (ENSIPUG00000023953) si:dkey-51e6.1 (ENSIPUG00000023951) si:dkey-97o5.1 (ENSIPUG00000023946) Scyl3 (ENSIPUG00000023938) ENSIPUG00000023937 prg4b (ENSIPUG00000023935) tprb (ENSIPUG00000023928) pdcb (ENSIPUG00000023924) ptgs2b (ENSIPUG00000023922) Channel catfish MODERN SPECIES 15 hs6st1b (ENSIPUG00000004826) bcl2 (ENSIPUG00000004823) cox4i1l (ENSIPUG00000004802) prkag2a (ENSIPUG00000004673) topbp1 (ENSIPUG00000004602) tmem108 (ENSIPUG00000004577) cdv3 (ENSIPUG00000004558) vps41 (ENSIPUG00000004370) pou6f2 (ENSIPUG00000004301) yae1d1 (ENSIPUG00000004288) ENSIPUG00000004235 ankhb (ENSIPUG00000004183) myca (ENSIPUG00000004157) FAM49B (ENSIPUG00000004088) eef1a1l3 (ENSIPUG00000004067) ENSIPUG00000004056 ##22 ENSIPUG00000004039 ENSIPUG00000004012 DNAJC13 (ENSIPUG00000003911) tmx3 (ENSIPUG00000003866) lztfl1 (ENSIPUG00000003801) ENSIPUG00000003784 CCR9 (ENSIPUG00000003778) gli3 (ENSIPUG00000003729) prpf4b (ENSIPUG00000003706) pxdc1b (ENSIPUG00000003673) ackr4b (ENSIPUG00000003662) ACAD11 (ENSIPUG00000003475) myrip (ENSIPUG00000003419) prlh (ENSIPUG00000003406) zfand1 (ENSIPUG00000003356) Channel catfish MODERN SPECIES 4 dnah9 (ENSIPUG00000004794) myocd (ENSIPUG00000005012) map2k4b (ENSIPUG00000005093) adprm (ENSIPUG00000005130) gas7 (ENSIPUG00000005151) ENSIPUG00000005224 rcvrnb (ENSIPUG00000005342) glp2r (ENSIPUG00000005364) ENSIPUG00000005382 hs3st3l (ENSIPUG00000005400) dhrs7ca (ENSIPUG00000005408) ENSIPUG00000005451 ENSIPUG00000005546 bsk146 (ENSIPUG00000005555) ENSIPUG00000005578 ACTB (ENSIPUG00000005742) ##22 sult2st2 (ENSIPUG00000005762) ENSIPUG00000005784 abcc3 (ENSIPUG00000005801) ENSIPUG00000005832 tob1b (ENSIPUG00000005837) SPAG9 (ENSIPUG00000005844) daglb (ENSIPUG00000005930) KDELR2 (ENSIPUG00000005957) mettl9 (ENSIPUG00000005995) cdr2b (ENSIPUG00000006008) Polr3e (ENSIPUG00000006055) eef2k (ENSIPUG00000006144) mosmob (ENSIPUG00000006204) uqcrc2b (ENSIPUG00000006223) snu13b (ENSIPUG00000006267) Channel catfish MODERN SPECIES 27 kazald2 (ENSIPUG00000020140) tlx2 (ENSIPUG00000020150) npm1b (ENSIPUG00000020165) fgf24 (ENSIPUG00000020197) ENSIPUG00000020212 pcgf1 (ENSIPUG00000020218) lbx1 (ENSIPUG00000020237) nanos1 (ENSIPUG00000020252) AP1AR (ENSIPUG00000020283) GABRA4 (ENSIPUG00000020334) ENSIPUG00000020363 GUF1 (ENSIPUG00000020387) GNPDA1 (ENSIPUG00000020441) ENSIPUG00000020461 ENSIPUG00000020480 ##22 ENSIPUG00000020485 ##22 ENSIPUG00000020496 cenpu (ENSIPUG00000020497) casp3b (ENSIPUG00000020515) irf2 (ENSIPUG00000020557) enpp6 (ENSIPUG00000020567) snx25 (ENSIPUG00000020587) lrp2bp (ENSIPUG00000020645) ENSIPUG00000020661 loxl3a (ENSIPUG00000020664) tufm (ENSIPUG00000020682) ENSIPUG00000020840 ENSIPUG00000020843 fnta (ENSIPUG00000020862) pigg (ENSIPUG00000020872) hmmr (ENSIPUG00000020944) Euteleostomi ANCESTRAL SPECIES 63 ENSGT01050000244891.B ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00950000182960.a.a.a.b #22 ENSGT00950000182960.a.a.b ##22 ENSGT00390000015109 ENSGT00940000159293 ENSGT00390000017592 ENSGT00940000159507 ENSGT00940000157747 ENSGT00940000158573 ENSGT00940000157636 ENSGT00530000063996.b ENSGT00390000017551 ENSGT00550000074913 ENSGT00940000163734 ENSGT00940000156614.b ENSGT01070000253744.a.a.a.b.a.a ENSGT00940000162164 ENSGT00940000158717 Sarcopterygii DUPLICATION Sarcopterygii ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.a ##22 Coelacanth MODERN SPECIES 345 atp5mf (ENSLACG00000010797) CPSF4 (ENSLACG00000010938) PTCD1 (ENSLACG00000011172) BUD31 (ENSLACG00000011373) PDAP1 (ENSLACG00000011502) ARPC1B (ENSLACG00000011837) ARPC1A (ENSLACG00000012158) ENSLACG00000012445 KPNA7 (ENSLACG00000013531) SMURF1 (ENSLACG00000014191) ENSLACG00000014575 ENSLACG00000015251 ENSLACG00000015668 RNF216 (ENSLACG00000015715) FSCN1 (ENSLACG00000016447) ##21 ENSLACG00000016952 ##22 ENSLACG00000017094 ENSLACG00000017098 FBXL18 (ENSLACG00000017111) TNRC18 (ENSLACG00000017249) Sarcopterygii ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.b ##22 Coelacanth MODERN SPECIES 242 actb2 (ENSLACG00000001071) ##22 BAHCC1 (ENSLACG00000005612) #23 SLC38A10 (ENSLACG00000011693) #25 NDUFAF8 (ENSLACG00000022466) #26 TEPSIN (ENSLACG00000012210) #27 ENSLACG00000012555 CEP131 (ENSLACG00000013183) #28 ENSLACG00000013600 ENSLACG00000013865 AATK (ENSLACG00000014438) #30 BAIAP2 (ENSLACG00000015035) #31 CHMP6 (ENSLACG00000015695) #32 RPTOR (ENSLACG00000015817) #33 NPTX1 (ENSLACG00000016762) #35 ENDOV (ENSLACG00000016911) RNF213 (ENSLACG00000016942) Tetrapoda ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.b ##22 Amniota ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.b ##22 Mammalia ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.b ##22 Theria ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.b ##22 Eutheria ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.b ##22 Boreoeutheria ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.b ##22 Euarchontoglires ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.b ##22 Primates ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.b ##22 Haplorrhini ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.b ##22 Tarsier MODERN SPECIES 5935 ENSTSYG00000030727 ENSTSYG00000034458 ##22 Actinopterygii ANCESTRAL SPECIES 138 ENSGT01050000244891.B ENSGT00940000158690 ENSGT00940000165400 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00950000182960.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00390000002762.a.b ENSGT00390000010052.a ENSGT00940000156701 ENSGT00390000013127.b ENSGT00940000156643 ENSGT00950000182906.a.a.a ENSGT00390000009298 Neopterygii ANCESTRAL SPECIES 6 ENSGT00940000157972 ENSGT00940000155537 ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000160705.C.b ENSGT00390000002752 ENSGT00940000158127 ENSGT01050000244891.B ENSGT00940000158690 ENSGT00940000165400 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00950000182960.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00390000002762.a.b ENSGT00400000022459 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00390000013127.b ENSGT00940000156643 ENSGT00950000182906.a.a.a Spotted gar MODERN SPECIES 651 ENSLOCG00000004392 ENSLOCG00000004405 ap5z1 (ENSLOCG00000004430) radil (ENSLOCG00000004464) mmd2a (ENSLOCG00000004492) wipi2 (ENSLOCG00000004511) arpc1b (ENSLOCG00000004536) arpc1a (ENSLOCG00000004549) ENSLOCG00000004563 kpna7 (ENSLOCG00000004619) smurf1 (ENSLOCG00000004637) ENSLOCG00000018102 ENSLOCG00000018103 RNF216 (ENSLOCG00000004666) fscn1a (ENSLOCG00000004693) ##21 actb1 (ENSLOCG00000004713) ##22 fbxl18 (ENSLOCG00000004725) TNRC18 (ENSLOCG00000004756) slc29a4a (ENSLOCG00000004787) atp5mf (ENSLOCG00000004800) cpsf4 (ENSLOCG00000004814) PTCD1 (ENSLOCG00000004833) bud31 (ENSLOCG00000004858) pdap1b (ENSLOCG00000004873) shmt1 (ENSLOCG00000004890) ENSLOCG00000004911 smcr8a (ENSLOCG00000004927) TOP3A (ENSLOCG00000004935) flii (ENSLOCG00000004957) LLGL1 (ENSLOCG00000004976) alkbh5 (ENSLOCG00000005006) Osteoglossocephalai ANCESTRAL SPECIES 186 ENSGT00940000158690 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00950000182960.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00940000153974.A ENSGT00390000014300 ENSGT00390000018509.a ENSGT00390000002762.a.b ENSGT00400000022459 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00390000013127.b ENSGT00940000156643 ENSGT00950000182906.a.a.a Clupeocephala ANCESTRAL SPECIES 122 ENSGT00950000183060.a.a.d.b ENSGT00940000157636 ENSGT00940000158573 ENSGT00940000157747 ENSGT00950000182958.b.a.b ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000158690 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.b ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A ENSGT00940000167865 ENSGT00950000182935.B.b.d.b ENSGT00940000156666 Otomorpha ANCESTRAL SPECIES 12 ENSGT00980000201699.A ENSGT00940000157636.c ENSGT00940000158573 ENSGT00940000157747.y ENSGT00950000182958.b.a.b ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000158690 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.b ##22 ENSGT00940000157099 ENSGT00950000182898.a.b.o ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000014300 ENSGT00390000018509.a ENSGT00390000002762.a.b ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000156643 Clupeiformes ANCESTRAL SPECIES 119 ENSGT00940000158573 ENSGT00940000157747.y ENSGT00950000182958.b.a.b ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000160705.C.b ENSGT00390000002752 ENSGT00940000166074.B ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b.o ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000014300 ENSGT00390000018509.a ENSGT00390000002762.a.b ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000156643 Denticle herring MODERN SPECIES 17 gna12a (ENSDCDG00000014502) CARD11 (ENSDCDG00000014495) SDK1 (ENSDCDG00000011464) cyp3c4 (ENSDCDG00000008452) foxk1 (ENSDCDG00000008373) ap5z1 (ENSDCDG00000008330) mmd2a (ENSDCDG00000008292) wipi2 (ENSDCDG00000008004) arpc1b (ENSDCDG00000007870) arpc1a (ENSDCDG00000007835) ENSDCDG00000007758 smurf1 (ENSDCDG00000007740) ENSDCDG00000007733 ENSDCDG00000007718 fscn1a (ENSDCDG00000007707) ##21 actb2 (ENSDCDG00000007657) ##22 TNRC18 (ENSDCDG00000007644) slc29a4a (ENSDCDG00000007633) atp5mf (ENSDCDG00000007629) cpsf4 (ENSDCDG00000007624) bud31 (ENSDCDG00000007610) pdap1b (ENSDCDG00000007605) shmt1 (ENSDCDG00000005364) smcr8a (ENSDCDG00000005352) TOP3A (ENSDCDG00000005199) flii (ENSDCDG00000004586) rbbp6 (ENSDCDG00000004539) TNRC6A (ENSDCDG00000004509) ndufab1b (ENSDCDG00000004506) rpusd1 (ENSDCDG00000004505) dctn5 (ENSDCDG00000004502) Atlantic herring MODERN SPECIES 18 hapstr1b (ENSCHAG00000005700) prkcba (ENSCHAG00000005747) ENSCHAG00000006276 ENSCHAG00000006290 zgc:136472 (ENSCHAG00000006302) gng13a (ENSCHAG00000006373) chtf18 (ENSCHAG00000006395) ENSCHAG00000006798 plk1 (ENSCHAG00000006826) rasd3 (ENSCHAG00000006997) ndufab1a (ENSCHAG00000007016) ENSCHAG00000007022 FSCN1 (ENSCHAG00000007045) ##21 actb1 (ENSCHAG00000007065) ##22 fbxl18 (ENSCHAG00000002646) ENSCHAG00000002723 ENSCHAG00000002800 ENSCHAG00000002829 ENSCHAG00000002875 alkbh5 (ENSCHAG00000003005) mief2 (ENSCHAG00000003032) ENSCHAG00000003070 ENSCHAG00000003172 ENSCHAG00000003195 ENSCHAG00000003216 ENSCHAG00000003238 pgap6 (ENSCHAG00000003295) ENSCHAG00000003351 ENSCHAG00000003364 Otophysi DUPLICATION Otophysi ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.c ##22 Characiphysae ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.c ##22 Channel catfish MODERN SPECIES 27 aup1 (ENSIPUG00000020112) kazald2 (ENSIPUG00000020140) tlx2 (ENSIPUG00000020150) npm1b (ENSIPUG00000020165) fgf24 (ENSIPUG00000020197) ENSIPUG00000020212 pcgf1 (ENSIPUG00000020218) lbx1 (ENSIPUG00000020237) nanos1 (ENSIPUG00000020252) AP1AR (ENSIPUG00000020283) GABRA4 (ENSIPUG00000020334) ENSIPUG00000020363 GUF1 (ENSIPUG00000020387) GNPDA1 (ENSIPUG00000020441) ENSIPUG00000020461 ENSIPUG00000020480 ##22 ENSIPUG00000020485 ##22 ENSIPUG00000020496 cenpu (ENSIPUG00000020497) casp3b (ENSIPUG00000020515) irf2 (ENSIPUG00000020557) enpp6 (ENSIPUG00000020567) snx25 (ENSIPUG00000020587) lrp2bp (ENSIPUG00000020645) ENSIPUG00000020661 loxl3a (ENSIPUG00000020664) tufm (ENSIPUG00000020682) ENSIPUG00000020840 ENSIPUG00000020843 fnta (ENSIPUG00000020862) pigg (ENSIPUG00000020872) Otophysi DUPLICATION Otophysi DUPLICATION Otophysi ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.d.a.a ##22 Characiphysae ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.d.a.a ##22 Channel catfish MODERN SPECIES 18 ENSIPUG00000001249 plk1 (ENSIPUG00000001265) rasd3 (ENSIPUG00000001296) palb2 (ENSIPUG00000001303) ndufab1a (ENSIPUG00000001332) ENSIPUG00000001345 ENSIPUG00000001357 ENSIPUG00000001376 prkcba (ENSIPUG00000001386) tlr2 (ENSIPUG00000001403) socs1b (ENSIPUG00000001408) GRIN2A (ENSIPUG00000001415) hapstr1b (ENSIPUG00000001426) abcg2c (ENSIPUG00000001442) FSCN1 (ENSIPUG00000001551) ##21 actb1 (ENSIPUG00000001566) ##22 fbxl18 (ENSIPUG00000001574) zgc:112980 (ENSIPUG00000001596) smcr8b (ENSIPUG00000001614) mief2 (ENSIPUG00000001619) alkbh5 (ENSIPUG00000001628) ENSIPUG00000001634 ENSIPUG00000001645 syngr3b (ENSIPUG00000001651) ENSIPUG00000001664 CACNA1H (ENSIPUG00000001670) ENSIPUG00000001691 ENSIPUG00000001700 lancl1 (ENSIPUG00000001718) mylz3 (ENSIPUG00000001745) pcnp (ENSIPUG00000001775) Characiphysae_b ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.d.a.a ##22 Electric eel MODERN SPECIES 246 gng13a (ENSEEEG00000016266) ENSEEEG00000016269 ENSEEEG00000016300 plk1 (ENSEEEG00000016588) rasd3 (ENSEEEG00000016600) ENSEEEG00000016601 ENSEEEG00000016605 prkcba (ENSEEEG00000016653) tlr2 (ENSEEEG00000017368) socs1b (ENSEEEG00000017430) TVP23A (ENSEEEG00000017431) GRIN2A (ENSEEEG00000017432) hapstr1b (ENSEEEG00000017433) ENSEEEG00000017436 FSCN1 (ENSEEEG00000017440) ##21 actb1 (ENSEEEG00000017494) ##22 fbxl18 (ENSEEEG00000018573) ENSEEEG00000018576 ENSEEEG00000018578 PTCD1 (ENSEEEG00000018581) zgc:112980 (ENSEEEG00000018582) smcr8b (ENSEEEG00000018584) mief2 (ENSEEEG00000018587) alkbh5 (ENSEEEG00000018588) ENSEEEG00000018590 syngr3b (ENSEEEG00000018592) ENSEEEG00000018593 ENSEEEG00000018594 FAM83G (ENSEEEG00000018597) ENSEEEG00000018601 ENSEEEG00000018603 Characoidei ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.d.a.a ##22 Red-bellied piranha MODERN SPECIES 294 chtf18 (ENSPNAG00000005455) ENSPNAG00000014531 plk1 (ENSPNAG00000003178) ENSPNAG00000014596 ndufab1a (ENSPNAG00000003185) ENSPNAG00000003191 prkcba (ENSPNAG00000014653) tlr2 (ENSPNAG00000014666) ENSPNAG00000014678 socs1b (ENSPNAG00000014688) TVP23A (ENSPNAG00000003215) GRIN2A (ENSPNAG00000014710) hapstr1b (ENSPNAG00000014722) ENSPNAG00000003238 FSCN1 (ENSPNAG00000014780) ##21 actb1 (ENSPNAG00000003254) ##22 fbxl18 (ENSPNAG00000003261) ENSPNAG00000014808 ENSPNAG00000014817 ENSPNAG00000014829 ENSPNAG00000003279 ENSPNAG00000003283 ENSPNAG00000003287 ENSPNAG00000014857 ENSPNAG00000003294 ENSPNAG00000014890 PTCD1 (ENSPNAG00000014931) zgc:112980 (ENSPNAG00000014943) smcr8b (ENSPNAG00000014948) mief2 (ENSPNAG00000014956) alkbh5 (ENSPNAG00000014968) Cyprinoidei ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.d.a.a ##22 Zebrafish MODERN SPECIES ENSDARG00000076716 ndufab1a (ENSDARG00000058463) ENSDARG00000093053 ENSDARG00000100949 ENSDARG00000088975 ENSDARG00000058460 ENSDARG00000110570 prkcba (ENSDARG00000008723) tlr2 (ENSDARG00000037758) ENSDARG00000094206 socs1b (ENSDARG00000089873) ENSDARG00000070543 hapstr1b (ENSDARG00000012458) abcg2b (ENSDARG00000079361) FSCN1 (ENSDARG00000037747) ##21 actb1 (ENSDARG00000037746) ##22 fbxl18 (ENSDARG00000007443) ENSDARG00000079873 ENSDARG00000100771 ENSDARG00000113858 PTCD1 (ENSDARG00000076176) zgc:112980 (ENSDARG00000037739) smcr8b (ENSDARG00000015803) mief2 (ENSDARG00000002377) alkbh5 (ENSDARG00000063003) MYO15A (ENSDARG00000078474) syngr3b (ENSDARG00000025034) CACNA1H (ENSDARG00000099708) grapb (ENSDARG00000022668) FAM83G (ENSDARG00000062929) SLC5A10 (ENSDARG00000074212) Cyprininae ANCESTRAL SPECIES 117 ENSGT00530000064157.a.e ENSGT00940000167465 ENSGT00940000165262.b ENSGT00940000166918.b ENSGT00390000002127.b.a ENSGT00730000110943.A.b ENSGT01050000244893.c.a.a.b.h ENSGT01030000234842 ENSGT00940000155217.o.a.b ENSGT00940000156323.c.b.b ENSGT00940000167193.g ENSGT00940000156222.a.b.d ENSGT00390000002886.a.d ENSGT00940000165949.c.b ENSGT00950000183157.a.a.b.p.b ##21 ENSGT00950000182960.a.a.b.d.a.a ##22 ENSGT00390000015109.d ENSGT01030000234592.A.a.a.a.b.c.b.b ENSGT00950000182960.a.a.a.a ##22 ENSGT00390000015109.c ENSGT01030000234592.A.a.a.a.b.c.a ENSGT00950000182898.a.b.p ENSGT00400000022459.e ENSGT00390000010052.b.a ENSGT00390000013127.b.g ENSGT00390000009298.f ENSGT00940000155335.s.a ENSGT00950000182935.B.b.d.b.b ENSGT00940000156666.jc ENSGT00390000016550.g ENSGT00940000156254.o.a.b Goldfish MODERN SPECIES 18 plk1 (ENSCARG00000022023) rasd3 (ENSCARG00000022042) ENSCARG00000022050 ndufab1a (ENSCARG00000022062) ENSCARG00000022088 ENSCARG00000022113 prkcba (ENSCARG00000022127) tlr2 (ENSCARG00000022294) ENSCARG00000022299 socs1b (ENSCARG00000022305) GRIN2A (ENSCARG00000022311) ENSCARG00000022345 hapstr1b (ENSCARG00000022353) ENSCARG00000022363 ENSCARG00000022374 ##21 B-actin (ENSCARG00000022386) ##22 fbxl18 (ENSCARG00000022398) ENSCARG00000022415 ENSCARG00000022422 PTCD1 (ENSCARG00000022427) zgc:112980 (ENSCARG00000022439) smcr8b (ENSCARG00000022461) mief2 (ENSCARG00000022466) alkbh5 (ENSCARG00000022476) grapb (ENSCARG00000022716) ENSCARG00000022725 FAM83G (ENSCARG00000022738) ENSCARG00000022751 ENSCARG00000022774 MMD2 (ENSCARG00000046816) radil (ENSCARG00000046839) Cyprininae_a ANCESTRAL SPECIES 82 ENSGT00940000173775.d ENSGT00530000064157.a.e ENSGT00940000167465 ENSGT00940000165262.b ENSGT00940000166918.b ENSGT00390000002127.b.a ENSGT00730000110943.A.b ENSGT01050000244893.c.a.a.b.h ENSGT00940000155217.o.a.b ENSGT00940000156323.c.b.b ENSGT00940000167193.g ENSGT00940000156222.a.b.d ENSGT00390000002886.a.d ENSGT00940000165949.c.b ENSGT00950000183157.a.a.b.p.b ##21 ENSGT00950000182960.a.a.b.d.a.a ##22 ENSGT00390000015109.c ENSGT01030000234592.A.a.a.a.b.c.a ENSGT00950000182898.a.b.p.a Common carp reference DUPLICATION Common carp reference MODERN SPECIES 27 chtf18 (ENSCCRG00000062701) ENSCCRG00000000154 plk1 (ENSCCRG00000079123) rasd3 (ENSCCRG00000079079) ENSCCRG00000000074 ENSCCRG00000000053 ENSCCRG00000061383 prkcba (ENSCCRG00000034139) tlr2 (ENSCCRG00000062189) ENSCCRG00000043016 socs1b (ENSCCRG00000080136) ENSCCRG00000019234 hapstr1b (ENSCCRG00000025664) ENSCCRG00000063025 ENSCCRG00000025679 ##21 actb1 (ENSCCRG00000025681) ##22 ENSCCRG00000058525 ENSCCRG00000072328 ENSCCRG00000067344 ENSCCRG00000079256 ENSCCRG00000062529 ENSCCRG00000080720 ENSCCRG00000025725 zgc:112980 (ENSCCRG00000013839) smcr8b (ENSCCRG00000013836) mief2 (ENSCCRG00000013833) alkbh5 (ENSCCRG00000062773) ENSCCRG00000002086 syngr3b (ENSCCRG00000027421) ENSCCRG00000000467 ENSCCRG00000020485 Common carp reference MODERN SPECIES 22 ENSCCRG00000061711 zgc:136472 (ENSCCRG00000011847) gng13a (ENSCCRG00000078179) ENSCCRG00000011831 ENSCCRG00000003141 plk1 (ENSCCRG00000002314) ENSCCRG00000000596 ENSCCRG00000062370 prkcba (ENSCCRG00000043116) tlr2 (ENSCCRG00000001655) socs1b (ENSCCRG00000066511) ENSCCRG00000025659 hapstr1b (ENSCCRG00000078577) ENSCCRG00000025672 FSCN1 (ENSCCRG00000022207) ##21 actb1 (ENSCCRG00000022147) ##22 fbxl18 (ENSCCRG00000038752) ENSCCRG00000038757 zgc:112980 (ENSCCRG00000038763) mief2 (ENSCCRG00000027425) alkbh5 (ENSCCRG00000027423) syngr3b (ENSCCRG00000002079) ENSCCRG00000023569 grapb (ENSCCRG00000077049) ENSCCRG00000017888 FAM83G (ENSCCRG00000017893) ENSCCRG00000013770 ENSCCRG00000013781 ENSCCRG00000006853 ENSCCRG00000036345 ENSCCRG00000036338 Golden-line barbel MODERN SPECIES 131 ENSSGRG00000021467 ENSSGRG00000020874 plk1 (ENSSGRG00000020793) ndufab1a (ENSSGRG00000020792) ENSSGRG00000020791 ENSSGRG00000020790 prkcba (ENSSGRG00000020631) tlr2 (ENSSGRG00000020613) ENSSGRG00000020609 socs1b (ENSSGRG00000020604) ENSSGRG00000020602 ENSSGRG00000020600 hapstr1b (ENSSGRG00000020596) ENSSGRG00000020594 ENSSGRG00000020592 ##21 actb1 (ENSSGRG00000019744) ##22 fbxl18 (ENSSGRG00000019730) ENSSGRG00000019729 ENSSGRG00000019727 PTCD1 (ENSSGRG00000019726) zgc:112980 (ENSSGRG00000019724) smcr8b (ENSSGRG00000019723) mief2 (ENSSGRG00000019722) alkbh5 (ENSSGRG00000019720) ENSSGRG00000019718 syngr3b (ENSSGRG00000019717) CACNA1H (ENSSGRG00000019715) grapb (ENSSGRG00000019712) ENSSGRG00000019710 SLC5A10 (ENSSGRG00000019709) ENSSGRG00000019708 Otophysi ANCESTRAL SPECIES 34 ENSGT00980000201699.A ENSGT00940000157636.c ENSGT00940000158573 ENSGT00940000157747.y ENSGT00950000182958.b.a.b ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000158690 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.b.d.a.b ##22 ENSGT00940000157099 ENSGT00950000182898.a.b.o ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000014300 ENSGT00390000018509.a ENSGT00390000002762.a.b ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000156643 ENSGT00390000014178 ENSGT00950000182935.B.b.d.a ENSGT00390000001979 ENSGT00940000153340.A ENSGT00940000155335.t Characiphysae ANCESTRAL SPECIES 10 ENSGT00940000157636.c ENSGT00940000158573 ENSGT00940000157747.y ENSGT00950000182958.b.a.b ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000160705.C.b ENSGT00940000158690 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.b.d.a.b ##22 ENSGT00940000157099 ENSGT00950000182898.a.b.o ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000014300 ENSGT00390000018509.a ENSGT00390000002762.a.b ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000156643 ENSGT00390000014178 ENSGT00950000182935.B.b.d.a ENSGT00390000001979 ENSGT00940000153340.A ENSGT00940000155335.t Channel catfish MODERN SPECIES 16 gna12 (ENSIPUG00000018333) card11 (ENSIPUG00000018235) SDK1 (ENSIPUG00000017988) cyp3a40 (ENSIPUG00000017942) foxk1 (ENSIPUG00000017911) ap5z1 (ENSIPUG00000017877) mmd2 (ENSIPUG00000017843) WIPI2 (ENSIPUG00000017786) ARPC1B (ENSIPUG00000017735) arpc1a (ENSIPUG00000017706) ENSIPUG00000017631 smurf1 (ENSIPUG00000017588) ENSIPUG00000017573 ENSIPUG00000017537 fscn1 (ENSIPUG00000017523) ##21 actb (ENSIPUG00000017486) ##22 twf1b (ENSIPUG00000017458) tnrc18 (ENSIPUG00000017314) slc29a4 (ENSIPUG00000017239) atp5mf (ENSIPUG00000017219) cpsf4 (ENSIPUG00000017147) bud31 (ENSIPUG00000017126) pdap1 (ENSIPUG00000017111) shmt1 (ENSIPUG00000017041) smcr8 (ENSIPUG00000017027) top3a (ENSIPUG00000016972) flii (ENSIPUG00000016799) mgmt (ENSIPUG00000016768) znf598 (ENSIPUG00000016692) SYNGR3 (ENSIPUG00000016672) gfer (ENSIPUG00000016666) Characiphysae_b ANCESTRAL SPECIES 1 ENSGT00940000157747.y ENSGT00950000182958.b.a.b ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000160705.C.b ENSGT00390000002752 ENSGT00940000166074.B ENSGT00940000158690 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.b.d.a.b ##22 ENSGT00940000157099 ENSGT00950000182898.a.b.o ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000014300 ENSGT00390000018509.a ENSGT00390000002762.a.b ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000156643 ENSGT00390000014178 ENSGT00950000182935.B.b.d.a ENSGT00390000001979 ENSGT00940000153340.A ENSGT00940000167865 Electric eel MODERN SPECIES eif3ba (ENSEEEG00000000020) gna12a (ENSEEEG00000000019) CARD11 (ENSEEEG00000000018) SDK1 (ENSEEEG00000000017) cyp3c4 (ENSEEEG00000000016) foxk1 (ENSEEEG00000000015) ap5z1 (ENSEEEG00000000014) mmd2a (ENSEEEG00000000013) wipi2 (ENSEEEG00000000012) arpc1b (ENSEEEG00000000011) arpc1a (ENSEEEG00000000010) ENSEEEG00000000009 smurf1 (ENSEEEG00000000008) RNF216 (ENSEEEG00000000006) fscn1a (ENSEEEG00000000005) ##21 actb2 (ENSEEEG00000000004) ##22 TNRC18 (ENSEEEG00000000003) slc29a4a (ENSEEEG00000000002) Characoidei ANCESTRAL SPECIES 3 ENSGT00940000157636.c ENSGT00940000158573 ENSGT00940000157747.y ENSGT00950000182958.b.a.b ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000160705.C.b ENSGT00940000158690 ENSGT01030000234534.C ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.b.d.a.b ##22 ENSGT00940000157099 ENSGT00950000182898.a.b.o ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000014300 ENSGT00390000018509.a ENSGT00390000002762.a.b ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000156643 ENSGT00390000014178 ENSGT00950000182935.B.b.d.a ENSGT00390000001979 ENSGT00940000153340.A ENSGT00940000167865 Mexicana tetra MODERN SPECIES 15 wipi2 (ENSAMXG00000009985) arpc1b (ENSAMXG00000009992) arpc1a (ENSAMXG00000009997) ENSAMXG00000010027 smurf1 (ENSAMXG00000010087) micall2a (ENSAMXG00000003783) ENSAMXG00000030924 INTS1 (ENSAMXG00000001060) mafk (ENSAMXG00000001047) tmem184a (ENSAMXG00000039767) psmg3 (ENSAMXG00000030051) ENSAMXG00000042959 ENSAMXG00000025542 RNF216 (ENSAMXG00000010094) fscn1a (ENSAMXG00000031207) ##21 actb2 (ENSAMXG00000037226) ##22 TNRC18 (ENSAMXG00000010115) slc29a4a (ENSAMXG00000010125) atp5mf (ENSAMXG00000035415) cpsf4 (ENSAMXG00000031647) bud31 (ENSAMXG00000010164) pdap1b (ENSAMXG00000032699) shmt1 (ENSAMXG00000010173) smcr8a (ENSAMXG00000041003) TOP3A (ENSAMXG00000010181) flii (ENSAMXG00000010194) znf598 (ENSAMXG00000010217) syngr3a (ENSAMXG00000043644) gfer (ENSAMXG00000010225) drg2 (ENSAMXG00000010228) ENSAMXG00000038251 Red-bellied piranha MODERN SPECIES 89 gna12a (ENSPNAG00000021705) CARD11 (ENSPNAG00000021827) SDK1 (ENSPNAG00000022156) cyp3c4 (ENSPNAG00000022214) foxk1 (ENSPNAG00000022234) ap5z1 (ENSPNAG00000022269) mmd2a (ENSPNAG00000022319) wipi2 (ENSPNAG00000022384) arpc1b (ENSPNAG00000022408) arpc1a (ENSPNAG00000022456) ENSPNAG00000022571 smurf1 (ENSPNAG00000022618) ENSPNAG00000003722 RNF216 (ENSPNAG00000022632) fscn1a (ENSPNAG00000022662) ##21 actb2 (ENSPNAG00000022673) ##22 TNRC18 (ENSPNAG00000022709) slc29a4a (ENSPNAG00000022751) atp5mf (ENSPNAG00000022775) cpsf4 (ENSPNAG00000003736) bud31 (ENSPNAG00000022817) pdap1b (ENSPNAG00000022846) shmt1 (ENSPNAG00000022895) smcr8a (ENSPNAG00000022908) TOP3A (ENSPNAG00000022998) flii (ENSPNAG00000005190) znf598 (ENSPNAG00000023121) syngr3a (ENSPNAG00000023146) gfer (ENSPNAG00000023159) drg2 (ENSPNAG00000023202) ENSPNAG00000003759 Cyprinoidei ANCESTRAL SPECIES 56 ENSGT00940000157636.c ENSGT00940000158573 ENSGT00940000157747.y ENSGT00950000182958.b.a.b.c.b ENSGT00940000159507 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00950000183183.b.b ENSGT00950000183183.b.a ENSGT00940000158690.e ENSGT01030000234534.C ENSGT00940000158690.f ENSGT00510000048032 ENSGT00950000183157.a.a.b ##21 ENSGT00950000182960.a.a.b.d.a.b ##22 ENSGT00940000157099 ENSGT00950000182898.a.b.o ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000014300 ENSGT00390000018509.a ENSGT00390000002762.a.b ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000156643 ENSGT00390000014178 ENSGT00950000182935.B.b.d.a ENSGT00390000001979 ENSGT00940000153340.A ENSGT00940000155335.t Zebrafish MODERN SPECIES 18 cyp3c1 (ENSDARG00000015575) ENSDARG00000037874 cyp3c3 (ENSDARG00000037873) cyp3c4 (ENSDARG00000070021) foxk1 (ENSDARG00000037872) ap5z1 (ENSDARG00000078111) mmd2a (ENSDARG00000087446) wipi2 (ENSDARG00000037871) arpc1b (ENSDARG00000027063) arpc1a (ENSDARG00000008383) smurf1 (ENSDARG00000016086) ENSDARG00000096870 ENSDARG00000109826 RNF216 (ENSDARG00000087893) fscn1a (ENSDARG00000059680) ##21 actb2 (ENSDARG00000037870) ##22 TNRC18 (ENSDARG00000077052) slc29a4a (ENSDARG00000059690) atp5mf (ENSDARG00000037867) ENSDARG00000116912 cpsf4 (ENSDARG00000020217) bud31 (ENSDARG00000017084) pdap1b (ENSDARG00000002967) shmt1 (ENSDARG00000052816) smcr8a (ENSDARG00000052818) TOP3A (ENSDARG00000052827) flii (ENSDARG00000059701) znf598 (ENSDARG00000014945) syngr3a (ENSDARG00000014871) gfer (ENSDARG00000070061) drg2 (ENSDARG00000006642) Cyprininae ANCESTRAL SPECIES 182 ENSGT00550000074913.i.c ENSGT00980000201699.A ENSGT00940000157636.c.d ENSGT00940000158573.l ENSGT00940000157747.y.b ENSGT00950000182958.b.a.b.c.b.a ENSGT00940000159507.d ENSGT00390000017592.i ENSGT00940000157972.c.b ENSGT00940000155537.g ENSGT00950000183183.b.b.c ENSGT00950000183183.b.a.l ENSGT00940000158690.e.a ENSGT00510000048032.k ENSGT00950000183157.a.a.b.o.b.a ##21 ENSGT00950000182960.a.a.b.d.a.b ##22 ENSGT00940000157099.t ENSGT00950000182898.a.b.o.b ENSGT00940000165557.i ENSGT00940000155520.wb ENSGT00390000014300.m ENSGT00390000018509.a.r ENSGT00390000002762.a.b.m ENSGT00390000010052.a.a ENSGT00940000156701.a ENSGT00940000156643.a ENSGT00390000014178.a ENSGT00950000182935.B.b.d.a.a ENSGT00390000001979.e.a ENSGT00940000153340.A.l ENSGT00940000155335.t.a Goldfish DUPLICATION Goldfish MODERN SPECIES 2030 smurf1 (ENSCARG00000051196) ENSCARG00000053675 ENSCARG00000053686 fscn1a (ENSCARG00000053801) ##21 actb2 (ENSCARG00000053829) ##22 TNRC18 (ENSCARG00000053853) slc29a4a (ENSCARG00000053894) atp5mf (ENSCARG00000053922) cpsf4 (ENSCARG00000054014) bud31 (ENSCARG00000054131) pdap1b (ENSCARG00000054169) shmt1 (ENSCARG00000054203) smcr8a (ENSCARG00000054542) TOP3A (ENSCARG00000054697) flii (ENSCARG00000058689) znf598 (ENSCARG00000060853) syngr3a (ENSCARG00000060864) gfer (ENSCARG00000060873) drg2 (ENSCARG00000060913) MYO15A (ENSCARG00000061190) Goldfish MODERN SPECIES 22 ENSCARG00000030873 cth1 (ENSCARG00000030880) mta2 (ENSCARG00000030914) EML3 (ENSCARG00000031695) ecsit (ENSCARG00000035833) rtn3 (ENSCARG00000035850) men1 (ENSCARG00000035872) tnfsf18 (ENSCARG00000035897) ENSCARG00000035903 tmed1a (ENSCARG00000035920) dnm2a (ENSCARG00000036063) qtrt1 (ENSCARG00000036241) ENSCARG00000036273 ENSCARG00000036338 ENSCARG00000036352 actb2 (ENSCARG00000036365) ##22 ENSCARG00000036453 slc29a4a (ENSCARG00000036666) atp5mf (ENSCARG00000036687) cpsf4 (ENSCARG00000036711) bud31 (ENSCARG00000036766) pdap1b (ENSCARG00000036792) shmt1 (ENSCARG00000036814) smcr8a (ENSCARG00000036968) flii (ENSCARG00000037021) znf598 (ENSCARG00000038905) syngr3a (ENSCARG00000038959) gfer (ENSCARG00000038975) drg2 (ENSCARG00000039005) notch3 (ENSCARG00000039235) ENSCARG00000041147 Cyprininae_a ANCESTRAL SPECIES 307 ENSGT00940000156614.b.h ENSGT00550000074913.i.d ENSGT00940000157636.c.c ENSGT00940000158573.k ENSGT00940000157747.y.a ENSGT00950000182958.b.a.b.c.a ENSGT00940000159507.c ENSGT00390000017592.j ENSGT00940000157972.c.a ENSGT00940000155537.h ENSGT00950000183183.b.b.d ENSGT00950000183183.b.a.k ENSGT00940000158690.e.b ENSGT00510000048032.l ENSGT00950000183157.a.a.b.o.a ##21 ENSGT00950000182960.a.a.b.d.a.b ##22 ENSGT00940000157099.s ENSGT00950000182898.a.b.o.a ENSGT00940000165557.h ENSGT00940000155520.vb ENSGT00390000014300.n ENSGT00390000018509.a.q ENSGT00390000002762.a.b.n ENSGT00390000010052.a.b ENSGT00940000156701.b ENSGT00940000156643.b ENSGT00390000014178.b ENSGT00950000182935.B.b.d.a.b ENSGT00390000001979.f ENSGT00940000153340.A.k.b ENSGT00940000155335.t.b Common carp reference DUPLICATION Common carp reference MODERN SPECIES 1 eif3ba (ENSCCRG00000076014) gna12a (ENSCCRG00000061734) ENSCCRG00000063825 ENSCCRG00000072338 SDK1 (ENSCCRG00000055349) cyp3c4 (ENSCCRG00000047631) cyp3c4 (ENSCCRG00000030874) ap5z1 (ENSCCRG00000058240) mmd2a (ENSCCRG00000057213) wipi2 (ENSCCRG00000075990) arpc1b (ENSCCRG00000080423) smurf1 (ENSCCRG00000001383) ENSCCRG00000013477 RNF216 (ENSCCRG00000006398) fscn1a (ENSCCRG00000001737) ##21 actb2 (ENSCCRG00000001748) ##22 ENSCCRG00000007286 slc29a4a (ENSCCRG00000035546) atp5mf (ENSCCRG00000031258) cpsf4 (ENSCCRG00000005959) bud31 (ENSCCRG00000006005) pdap1b (ENSCCRG00000006016) shmt1 (ENSCCRG00000056003) smcr8a (ENSCCRG00000077891) TOP3A (ENSCCRG00000006080) flii (ENSCCRG00000059665) ENSCCRG00000069280 znf598 (ENSCCRG00000042440) syngr3a (ENSCCRG00000038566) gfer (ENSCCRG00000071490) drg2 (ENSCCRG00000038573) Common carp reference MODERN SPECIES 3 eif3ba (ENSCCRG00000025354) CARD11 (ENSCCRG00000079965) SDK1 (ENSCCRG00000063944) ENSCCRG00000055534 foxk1 (ENSCCRG00000006272) ap5z1 (ENSCCRG00000006288) mmd2a (ENSCCRG00000007649) wipi2 (ENSCCRG00000007681) arpc1b (ENSCCRG00000007822) arpc1a (ENSCCRG00000007863) ENSCCRG00000015987 smurf1 (ENSCCRG00000007960) RNF216 (ENSCCRG00000001719) fscn1a (ENSCCRG00000055127) ##21 ENSCCRG00000005914 actb2 (ENSCCRG00000007233) ##22 slc29a4a (ENSCCRG00000029725) atp5mf (ENSCCRG00000012602) cpsf4 (ENSCCRG00000012607) bud31 (ENSCCRG00000073893) pdap1b (ENSCCRG00000068497) shmt1 (ENSCCRG00000012623) TOP3A (ENSCCRG00000012638) smcr8a (ENSCCRG00000012627) flii (ENSCCRG00000065292) znf598 (ENSCCRG00000061252) syngr3a (ENSCCRG00000055434) drg2 (ENSCCRG00000058584) llgl1 (ENSCCRG00000003326) ENSCCRG00000066485 ENSCCRG00000005748 Golden-line barbel MODERN SPECIES 8 gna12a (ENSSGRG00000006509) CARD11 (ENSSGRG00000006508) SDK1 (ENSSGRG00000004909) ENSSGRG00000004847 cyp3c4 (ENSSGRG00000002398) foxk1 (ENSSGRG00000002384) ap5z1 (ENSSGRG00000002381) mmd2a (ENSSGRG00000002379) wipi2 (ENSSGRG00000002238) arpc1b (ENSSGRG00000002202) arpc1a (ENSSGRG00000002198) smurf1 (ENSSGRG00000000663) ENSSGRG00000000609 ENSSGRG00000000601 fscn1a (ENSSGRG00000000599) ##21 actb2 (ENSSGRG00000000280) ##22 ENSSGRG00000046677 atp5mf (ENSSGRG00000046674) cpsf4 (ENSSGRG00000046623) bud31 (ENSSGRG00000046618) pdap1b (ENSSGRG00000046617) shmt1 (ENSSGRG00000046492) smcr8a (ENSSGRG00000046490) flii (ENSSGRG00000046171) znf598 (ENSSGRG00000046158) syngr3a (ENSSGRG00000046157) gfer (ENSSGRG00000046156) drg2 (ENSSGRG00000045994) MYO15A (ENSSGRG00000045988) LLGL1 (ENSSGRG00000045796) CCDC97 (ENSSGRG00000045784) Otophysi ANCESTRAL SPECIES 88 ENSGT00940000166918 ENSGT00940000163566.a.a ENSGT00390000014423 ENSGT00390000002127.b ENSGT00730000110943.A ENSGT01050000244893.c.a.a.b ENSGT01030000234842 ENSGT00940000155217.o.a ENSGT00940000156323.c.b ENSGT00940000178055 ENSGT00940000167193 ENSGT00390000004428.b ENSGT00940000156222.a.b ENSGT00390000002886.a ENSGT00940000165949.c ENSGT00950000182960.a.a.b.d.b ##22 ENSGT00390000015109 ENSGT01030000234592.A.a.a.a.b ENSGT00950000182898.a.b.p ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.e ENSGT00950000182935.B.b.d.b ENSGT00940000156666 ENSGT00940000159416 ENSGT00940000157972.d ENSGT00940000159293 Cyprinoidei ANCESTRAL SPECIES 34 ENSGT00940000165262 ENSGT00940000166918 ENSGT00940000163566.a.a ENSGT00390000014423 ENSGT00390000002127.b ENSGT00730000110943.A ENSGT01050000244893.c.a.a.b ENSGT01030000234842 ENSGT00940000155217.o.a ENSGT00940000156323.c.b ENSGT00940000178055 ENSGT00940000167193 ENSGT00940000156222.a.b ENSGT00390000002886.a ENSGT00940000165949.c ENSGT00950000182960.a.a.b.d.b ##22 ENSGT00390000015109 ENSGT01030000234592.A.a.a.a.b ENSGT00950000182898.a.b.p ENSGT00940000153974.A ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.e ENSGT00950000182935.B.b.d.b ENSGT00940000156666 ENSGT00940000156254.o.a ENSGT00940000157932.m.b ENSGT00940000159416 ENSGT00940000158025.a.b ENSGT00940000160560.a.a.a.a.a.a.a.b ENSGT00940000157972.d Cyprininae ANCESTRAL SPECIES 34 ENSGT00940000166918.a ENSGT00940000157752 ENSGT00940000163566.a.a.c ENSGT00390000014423 ENSGT00390000002127.b.b ENSGT00730000110943.A.a ENSGT01050000244893.c.a.a.b.g ENSGT00940000155217.o.a.a ENSGT00940000156323.c.b.a ENSGT00940000178055 ENSGT00940000167193.h ENSGT00940000156222.a.b.c ENSGT00390000002886.a.c ENSGT00940000165949.c.a ENSGT00950000183157.a.a.b.p.a ##21 ENSGT00950000182960.a.a.b.d.b ##22 ENSGT00940000153974.A ENSGT00400000022459.f ENSGT00390000010052.b.b ENSGT00390000013127.b.h ENSGT00390000009298.e ENSGT00930000151032.A.e ENSGT00950000182935.B.b.d.b.a ENSGT00940000156666.kc ENSGT00940000156254.o.a.a ENSGT00940000157932.m.b.a ENSGT00940000159416.f Cyprininae_a ANCESTRAL SPECIES 49 ENSGT00940000165262.a ENSGT00940000166918.a ENSGT00940000163566.a.a.c ENSGT00390000014423 ENSGT00390000002127.b.b ENSGT00730000110943.A.a ENSGT01050000244893.c.a.a.b.g ENSGT00940000155217.o.a.a ENSGT00940000156323.c.b.a ENSGT00940000178055 ENSGT00940000167193.h ENSGT00940000156222.a.b.c ENSGT00390000002886.a.c ENSGT00940000165949.c.a ENSGT00950000183157.a.a.b.p.a ##21 ENSGT00950000182960.a.a.b.d.b ##22 ENSGT00390000015109.d ENSGT01030000234592.A.a.a.a.b.c.b.b ENSGT00950000182898.a.b.p.b ENSGT00940000153974.A ENSGT00400000022459.f ENSGT00390000010052.b.b ENSGT00390000013127.b.h ENSGT00390000009298.e ENSGT00930000151032.A.e ENSGT00950000182935.B.b.d.b.a ENSGT00940000156666.kc ENSGT00940000156254.o.a.a ENSGT00940000157932.m.b.a ENSGT00940000159416.f ENSGT00940000158025.a.b.c Golden-line barbel MODERN SPECIES 24 chtf18 (ENSSGRG00000011513) ENSSGRG00000011517 plk1 (ENSSGRG00000011521) rasd3 (ENSSGRG00000011881) ENSSGRG00000011882 ndufab1a (ENSSGRG00000011885) ENSSGRG00000011887 ENSSGRG00000011888 prkcba (ENSSGRG00000011959) ENSSGRG00000014766 socs1b (ENSSGRG00000014767) GRIN2A (ENSSGRG00000014770) hapstr1b (ENSSGRG00000014804) ENSSGRG00000014805 ENSSGRG00000014806 ##21 ENSSGRG00000014841 ##22 fbxl18 (ENSSGRG00000015649) ENSSGRG00000015651 ENSSGRG00000015653 ENSSGRG00000015655 zgc:112980 (ENSSGRG00000015658) smcr8b (ENSSGRG00000015668) mief2 (ENSSGRG00000015683) alkbh5 (ENSSGRG00000015684) ENSSGRG00000015715 syngr3b (ENSSGRG00000015716) ENSSGRG00000015717 grapb (ENSSGRG00000015722) SLC5A10 (ENSSGRG00000015723) FAM83G (ENSSGRG00000015724) ENSSGRG00000015730 Characiphysae ANCESTRAL SPECIES 81 ENSGT00940000166918 ENSGT00940000163566.a.a ENSGT00390000014423 ENSGT00390000002127.b ENSGT00730000110943.A ENSGT01050000244893.c.a.a.b ENSGT01030000234842 ENSGT00940000155217.o.a ENSGT00940000156323.c.b.c ENSGT00940000178055 ENSGT00940000167193 ENSGT00390000004428.b ENSGT00940000156222.a.b ENSGT00390000002886.a ENSGT00940000165949.c ENSGT00950000182960.a.a.b.d.b ##22 ENSGT00390000015109 ENSGT01030000234592.A.a.a.a.b.e.a ENSGT00950000182898.a.b.p ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.e ENSGT00940000167865 ENSGT00950000182935.B.b.d.b ENSGT00940000156666 ENSGT00940000159416 ENSGT00940000156254.o.a ENSGT00940000157932.m.b Characiphysae_b ANCESTRAL SPECIES 84 ENSGT00940000166918 ENSGT00940000163566.a.a ENSGT00390000014423 ENSGT00390000002127.b ENSGT00730000110943.A ENSGT01050000244893.c.a.a.b ENSGT01030000234842 ENSGT00940000155217.o.a ENSGT00940000156323.c.b.c ENSGT00940000178055 ENSGT00940000167193 ENSGT00390000004428.b ENSGT00940000156222.a.b ENSGT00390000002886.a ENSGT00940000165949.c ENSGT00950000182960.a.a.b.d.b ##22 ENSGT00390000015109 ENSGT01030000234592.A.a.a.a.b.e.a.b ENSGT00950000182898.a.b.p ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.e ENSGT00950000182935.B.b.d.b ENSGT00940000156666 ENSGT00940000159416 ENSGT00940000156254.o.a ENSGT00940000157932.m.b ENSGT00940000158025.a.b.b Characoidei ANCESTRAL SPECIES 87 ENSGT00940000165262 ENSGT00940000166918 ENSGT00390000014423 ENSGT00390000002127.b ENSGT00730000110943.A ENSGT01050000244893.c.a.a.b ENSGT01030000234842 ENSGT00940000155217.o.a ENSGT00940000156323.c.b.c ENSGT00940000178055 ENSGT00940000167193 ENSGT00390000004428.b ENSGT00940000156222.a.b ENSGT00390000002886.a ENSGT00940000165949.c ENSGT00950000182960.a.a.b.d.b ##22 ENSGT00390000015109 ENSGT01030000234592.A.a.a.a.b.e.a.b ENSGT01030000234592.A.a.a.a.b.e.a.a.a.a ENSGT00950000182898.a.b.p ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.e ENSGT00950000182935.B.b.d.b ENSGT00940000156666 ENSGT00940000156254.o.a ENSGT00940000157932.m.b ENSGT00940000159416 Mexicana tetra MODERN SPECIES 3 ENSAMXG00000018368 plk1 (ENSAMXG00000018353) ndufab1a (ENSAMXG00000035636) ENSAMXG00000004146 ENSAMXG00000004152 ENSAMXG00000030377 prkcba (ENSAMXG00000031320) tlr2 (ENSAMXG00000037614) tlr2 (ENSAMXG00000025582) socs1b (ENSAMXG00000025584) TVP23A (ENSAMXG00000039842) GRIN2A (ENSAMXG00000042054) hapstr1b (ENSAMXG00000033053) ENSAMXG00000004240 FSCN1 (ENSAMXG00000004255) ##21 ENSAMXG00000010106 ##22 fbxl18 (ENSAMXG00000004274) ENSAMXG00000030013 ENSAMXG00000038214 ENSAMXG00000004281 PTCD1 (ENSAMXG00000037292) zgc:112980 (ENSAMXG00000004304) smcr8b (ENSAMXG00000004313) mief2 (ENSAMXG00000004319) alkbh5 (ENSAMXG00000037092) ENSAMXG00000039436 ENSAMXG00000040802 ENSAMXG00000038954 syngr3b (ENSAMXG00000043863) ENSAMXG00000036365 ENSAMXG00000042986 Euteleosteomorpha DUPLICATION Euteleosteomorpha DUPLICATION Euteleosteomorpha ANCESTRAL SPECIES 120 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00950000182960.a.a.a.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000014300 ENSGT00390000018509.a ENSGT00390000002762.a.b ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000156643 ENSGT00950000182906.a.a.a ENSGT00930000151032.A.c.b ENSGT00940000167865 ENSGT00940000155335.s.b Acanthomorphata ANCESTRAL SPECIES 25 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00950000182960.a.a.a.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 Euacanthomorphacea ANCESTRAL SPECIES 5 ENSGT00390000013127.a ENSGT01030000234887 ENSGT00990000211443 ENSGT00950000183045.A.b ENSGT00740000115744 ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Percomorphaceae ANCESTRAL SPECIES 3 ENSGT00390000013127.a ENSGT01030000234887 ENSGT00740000115744 ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Tiger tail seahorse MODERN SPECIES 262 ENSHCOG00000006884 mpst (ENSHCOG00000006897) mpst (ENSHCOG00000006906) ENSHCOG00000006919 ENSHCOG00000006940 ENSHCOG00000000207 chst12a (ENSHCOG00000006968) CARD11 (ENSHCOG00000007033) ap5z1 (ENSHCOG00000007072) mmd2a (ENSHCOG00000007105) wipi2 (ENSHCOG00000007134) smurf1 (ENSHCOG00000007183) ENSHCOG00000007204 FSCN1 (ENSHCOG00000007218) ##21 ENSHCOG00000007233 #22 ENSHCOG00000007252 ##22 TNRC18 (ENSHCOG00000000247) Percomorphaceae_B ANCESTRAL SPECIES 2 ENSGT00390000013127.a ENSGT01030000234887 ENSGT00740000115744 ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Ovalentaria ANCESTRAL SPECIES 1 ENSGT00390000013127.a ENSGT01030000234887 ENSGT00740000115744 ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Ovalentaria_B ANCESTRAL SPECIES ENSGT00390000013127.a ENSGT01030000234887 ENSGT00740000115744 ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Cichlidae ANCESTRAL SPECIES 19 ENSGT00390000013127.a ENSGT01030000234887 ENSGT00740000115744 ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00940000154208.d ENSGT00940000156578.a.a ENSGT00390000018542.a.b ENSGT00440000039203.j ENSGT00940000165277.b ENSGT00940000155618 ENSGT00390000001347 ENSGT00940000153657.A Midas cichlid MODERN SPECIES 413 ENSACIG00000008291 ENSACIG00000008294 mpst (ENSACIG00000008307) ENSACIG00000008325 ENSACIG00000008341 ENSACIG00000008365 chst12a (ENSACIG00000008378) CARD11 (ENSACIG00000008397) ap5z1 (ENSACIG00000008455) mmd2a (ENSACIG00000008496) wipi2 (ENSACIG00000008526) ENSACIG00000008555 smurf1 (ENSACIG00000008901) RNF216 (ENSACIG00000008944) FSCN1 (ENSACIG00000008970) ##21 ENSACIG00000008980 ##22 TNRC18 (ENSACIG00000008998) slc29a4a (ENSACIG00000009092) atp5mf (ENSACIG00000009170) cpsf4 (ENSACIG00000009248) shmt1 (ENSACIG00000009271) pdap1b (ENSACIG00000009293) bud31 (ENSACIG00000009314) ENSACIG00000009326 TOB2 (ENSACIG00000009336) tefb (ENSACIG00000009347) ZC3H7B (ENSACIG00000009388) rangap1a (ENSACIG00000009654) ENSACIG00000009692 rbx1 (ENSACIG00000009731) st13 (ENSACIG00000009746) Pseudocrenilabrinae ANCESTRAL SPECIES 1 ENSGT00390000013127.a ENSGT01030000234887 ENSGT00740000115744 ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000018426 ENSGT00940000154208.d ENSGT00940000156578.a.a ENSGT00390000018542.a.b ENSGT00440000039203.j ENSGT00940000165277.b ENSGT00940000155618 ENSGT00390000001347 Pseudocrenilabrinae_A ANCESTRAL SPECIES 27 ENSGT00390000013127.a ENSGT01030000234887 ENSGT00740000115744 ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000018426 ENSGT00940000154208.d ENSGT00940000156578.a.a ENSGT00390000018542.a.b ENSGT00440000039203.j ENSGT00940000165277.b ENSGT00940000155618 ENSGT00390000001347 Haplochromini ANCESTRAL SPECIES 54 ENSGT00740000115744 ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000165470.d ENSGT00390000004541.j ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300.b Burton s mouthbrooder MODERN SPECIES 753 mief1 (ENSHBUG00000014430) ENSHBUG00000014407 mpst (ENSHBUG00000014402) ENSHBUG00000014398 il2rb (ENSHBUG00000014372) ENSHBUG00000014308 chst12a (ENSHBUG00000014302) CARD11 (ENSHBUG00000014273) ap5z1 (ENSHBUG00000014221) mmd2a (ENSHBUG00000014183) wipi2 (ENSHBUG00000014150) ENSHBUG00000014076 smurf1 (ENSHBUG00000013857) RNF216 (ENSHBUG00000013829) FSCN1 (ENSHBUG00000013818) ##21 ENSHBUG00000013796 ##22 ENSHBUG00000013766 ENSHBUG00000013755 slc29a4a (ENSHBUG00000000406) cpsf4 (ENSHBUG00000013699) atp5mf (ENSHBUG00000013687) shmt1 (ENSHBUG00000013661) pdap1b (ENSHBUG00000013591) bud31 (ENSHBUG00000013563) Haplochromini_A ANCESTRAL SPECIES 37 ENSGT00740000115744 ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000165470.d ENSGT00390000004541.j ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300.b ENSGT00940000156053 ENSGT00390000002886.a.a.b ENSGT00390000015360 ENSGT00390000002127 ENSGT00940000158180 ENSGT01050000244893.c.a.a.a ENSGT00940000155217.o.b ENSGT00940000161164 P. nyererei MODERN SPECIES 427 mief1 (ENSPNYG00000018019) ENSPNYG00000018038 mpst (ENSPNYG00000018047) ube2ib (ENSPNYG00000018054) il2rb (ENSPNYG00000018082) ENSPNYG00000018136 chst12a (ENSPNYG00000018150) CARD11 (ENSPNYG00000018165) ap5z1 (ENSPNYG00000018222) mmd2a (ENSPNYG00000018238) wipi2 (ENSPNYG00000018273) ENSPNYG00000018318 smurf1 (ENSPNYG00000018376) ENSPNYG00000018397 FSCN1 (ENSPNYG00000018408) ##21 ENSPNYG00000018427 ##22 ENSPNYG00000018455 slc29a4a (ENSPNYG00000018510) atp5mf (ENSPNYG00000018539) cpsf4 (ENSPNYG00000018559) shmt1 (ENSPNYG00000018571) pdap1b (ENSPNYG00000018608) bud31 (ENSPNYG00000018630) USP7 (ENSPNYG00000018660) ENSPNYG00000018785 dctn5 (ENSPNYG00000018814) ndufab1b (ENSPNYG00000018838) TNRC6A (ENSPNYG00000018851) ENSPNYG00000018879 ENSPNYG00000018905 PRKCB (ENSPNYG00000018921) Haplochromini_B ANCESTRAL SPECIES 41 ENSGT00390000013127.a ENSGT01030000234887 ENSGT00740000115744 ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300.b ENSGT00940000156053 ENSGT00390000002886.a.a.b ENSGT00390000015360 ENSGT00390000002127 ENSGT00940000158180 ENSGT00940000159365.b.a.b ENSGT01050000244893.c.a.a.a ENSGT00940000155217.o.b Eastern happy MODERN SPECIES 16 ENSACLG00000011509 ENSACLG00000011507 ENSACLG00000011503 mpst (ENSACLG00000011501) ENSACLG00000011495 ENSACLG00000011466 ENSACLG00000011462 chst12a (ENSACLG00000011184) CARD11 (ENSACLG00000011082) ap5z1 (ENSACLG00000011021) MMD2 (ENSACLG00000010994) wipi2 (ENSACLG00000010922) smurf1 (ENSACLG00000010783) RNF216 (ENSACLG00000010729) FSCN1 (ENSACLG00000010718) ##21 ENSACLG00000010698 ##22 ENSACLG00000010670 ENSACLG00000010643 slc29a4a (ENSACLG00000010394) atp5mf (ENSACLG00000010386) cpsf4 (ENSACLG00000010374) shmt1 (ENSACLG00000010356) pdap1b (ENSACLG00000010346) bud31 (ENSACLG00000010341) ENSACLG00000010337 ENSACLG00000010334 USP7 (ENSACLG00000010306) ENSACLG00000010297 dctn5 (ENSACLG00000010288) ndufab1b (ENSACLG00000010282) TNRC6A (ENSACLG00000010240) Zebra mbuna MODERN SPECIES 1107 ENSMZEG00005006924 mpst (ENSMZEG00005006933) ENSMZEG00005006940 il2rb (ENSMZEG00005006969) ENSMZEG00005007014 chst12a (ENSMZEG00005007022) CARD11 (ENSMZEG00005007053) ap5z1 (ENSMZEG00005007127) mmd2a (ENSMZEG00005007185) wipi2 (ENSMZEG00005007214) ENSMZEG00005007272 ENSMZEG00005007290 smurf1 (ENSMZEG00005007314) RNF216 (ENSMZEG00005007337) FSCN1 (ENSMZEG00005007362) ##21 ENSMZEG00005007397 ##22 TNRC18 (ENSMZEG00005007439) slc29a4a (ENSMZEG00005007481) cpsf4 (ENSMZEG00005007515) atp5mf (ENSMZEG00005007522) shmt1 (ENSMZEG00005007542) pdap1b (ENSMZEG00005007587) bud31 (ENSMZEG00005007593) USP7 (ENSMZEG00005007612) ENSMZEG00005007687 dctn5 (ENSMZEG00005007705) ndufab1b (ENSMZEG00005007730) TNRC6A (ENSMZEG00005007756) ENSMZEG00005007792 ENSMZEG00005007804 PRKCB (ENSMZEG00005007831) Lyretail cichlid MODERN SPECIES 344 ENSNBRG00000005190 mief1 (ENSNBRG00000005168) ENSNBRG00000005158 ENSNBRG00000005143 mpst (ENSNBRG00000005135) ENSNBRG00000005091 C1QTNF6 (ENSNBRG00000005077) chst12a (ENSNBRG00000005067) CARD11 (ENSNBRG00000005011) ap5z1 (ENSNBRG00000004932) wipi2 (ENSNBRG00000004870) efcab1 (ENSNBRG00000004841) smurf1 (ENSNBRG00000004768) RNF216 (ENSNBRG00000004728) FSCN1 (ENSNBRG00000004704) ##21 ENSNBRG00000004668 ##22 TNRC18 (ENSNBRG00000004122) slc29a4a (ENSNBRG00000003983) atp5mf (ENSNBRG00000003971) cpsf4 (ENSNBRG00000003943) shmt1 (ENSNBRG00000003899) pdap1b (ENSNBRG00000003870) bud31 (ENSNBRG00000003852) TOB2 (ENSNBRG00000003831) TEF (ENSNBRG00000003823) ZC3H7B (ENSNBRG00000003771) RANGAP1 (ENSNBRG00000003657) rbx1 (ENSNBRG00000003645) ENSNBRG00000003619 xpnpep3 (ENSNBRG00000003563) EP300 (ENSNBRG00000003468) Nile tilapia MODERN SPECIES 16 CARD11 (ENSONIG00000008528) ap5z1 (ENSONIG00000008527) MMD2 (ENSONIG00000040581) wipi2 (ENSONIG00000008520) ENSONIG00000040231 smurf1 (ENSONIG00000008515) FSCN1 (ENSONIG00000008509) ##21 ENSONIG00000008502 slc29a4a (ENSONIG00000008500) atp5mf (ENSONIG00000008498) cpsf4 (ENSONIG00000039547) shmt1 (ENSONIG00000008491) pdap1 (ENSONIG00000038908) bud31 (ENSONIG00000008487) ENSONIG00000033963 actb2 (ENSONIG00000003145) ##22 ENSONIG00000008347 ENSONIG00000034319 EMP1 (ENSONIG00000030635) GSG1 (ENSONIG00000042588) ENSONIG00000029047 GRIN2B (ENSONIG00000008357) FMC1 (ENSONIG00000032844) hebp1 (ENSONIG00000027525) wbp2nl (ENSONIG00000008361) ENSONIG00000008363 rrp7a (ENSONIG00000008364) ENSONIG00000008367 fam234b (ENSONIG00000008369) ENSONIG00000037657 ndufa6 (ENSONIG00000040875) Pomacentridae ANCESTRAL SPECIES 31 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Bicolor damselfish MODERN SPECIES 1956 FSCN1 (ENSSPAG00000015524) ##21 ENSSPAG00000015489 ##22 ENSSPAG00000015460 ENSSPAG00000015455 Pomacentridae_A ANCESTRAL SPECIES 21 ENSGT00940000166554.b ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Spiny chromis MODERN SPECIES 803 MMD2 (ENSAPOG00000004480) wipi2 (ENSAPOG00000004535) ENSAPOG00000004645 smurf1 (ENSAPOG00000004687) ENSAPOG00000004727 FSCN1 (ENSAPOG00000004744) ##21 ENSAPOG00000004765 ##22 ENSAPOG00000004811 slc29a4a (ENSAPOG00000004839) ENSAPOG00000004853 atp5mf (ENSAPOG00000004869) cpsf4 (ENSAPOG00000004921) Amphiprion ANCESTRAL SPECIES 25 ENSGT00940000166554.b ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347.i ENSGT00940000155618 ENSGT00940000165277.b Clown anemonefish MODERN SPECIES 2622 FSCN1 (ENSAOCG00000005417) ##21 ENSAOCG00000005426 ##22 TNRC18 (ENSAOCG00000005458) Orange clownfish MODERN SPECIES 5 gspt1l (ENSAPEG00000010261) pdxdc1 (ENSAPEG00000010315) slc25a23b (ENSAPEG00000010405) gps1 (ENSAPEG00000010453) JUP (ENSAPEG00000010556) rbfox1 (ENSAPEG00000010636) ENSAPEG00000010808 chst12a (ENSAPEG00000010815) CARD11 (ENSAPEG00000010836) ap5z1 (ENSAPEG00000010932) mmd2a (ENSAPEG00000010952) wipi2 (ENSAPEG00000010987) smurf1 (ENSAPEG00000011048) ENSAPEG00000011134 FSCN1 (ENSAPEG00000011161) ##21 ENSAPEG00000011197 ##22 ENSAPEG00000011224 slc29a4a (ENSAPEG00000011458) ENSAPEG00000011492 ENSAPEG00000011507 xpnpep3 (ENSAPEG00000011557) st13 (ENSAPEG00000011577) SLC29A4 (ENSAPEG00000011616) ENSAPEG00000011672 atp5mf (ENSAPEG00000011712) cpsf4 (ENSAPEG00000011679) shmt1 (ENSAPEG00000011740) pdap1b (ENSAPEG00000011801) bud31 (ENSAPEG00000011830) smcr8a (ENSAPEG00000011852) TOP3A (ENSAPEG00000011863) Atherinomorphae ANCESTRAL SPECIES 6 ENSGT00390000013127.a ENSGT01030000234887 ENSGT00740000115744 ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Cyprinodontiformes ANCESTRAL SPECIES 3 ENSGT00390000013127.a ENSGT01030000234887 ENSGT00740000115744 ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Cyprinodontoidei ANCESTRAL SPECIES 22 ENSGT00740000115744 ENSGT00510000046773.a.b.c.a.j ENSGT00510000046773.a.b.c.a.i.b ENSGT00510000046773.a.b.c.a.i.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b.l ENSGT00390000002762.a.b.k ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 NAME_4 ANCESTRAL SPECIES 36 ENSGT00740000115744 ENSGT00510000046773.a.b.c.a.j ENSGT00510000046773.a.b.c.a.i.b ENSGT00510000046773.a.b.c.a.i.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b.l ENSGT00390000002762.a.b.k ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 Mummichog MODERN SPECIES 395 mpst (ENSFHEG00000010388) ENSFHEG00000010415 ENSFHEG00000010426 C1QTNF6 (ENSFHEG00000010432) chst12a (ENSFHEG00000010465) CARD11 (ENSFHEG00000010483) ap5z1 (ENSFHEG00000010508) mmd2a (ENSFHEG00000010533) wipi2 (ENSFHEG00000010574) smurf1 (ENSFHEG00000010695) RNF216 (ENSFHEG00000010758) FSCN1 (ENSFHEG00000010780) ##21 ENSFHEG00000010793 ##22 ENSFHEG00000010803 slc29a4a (ENSFHEG00000010836) atp5mf (ENSFHEG00000010853) cpsf4 (ENSFHEG00000010880) shmt1 (ENSFHEG00000010906) shmt1 (ENSFHEG00000010953) Sheepshead minnow MODERN SPECIES 287 ENSCVAG00000003420 ENSCVAG00000003433 mpst (ENSCVAG00000003437) ENSCVAG00000003452 ENSCVAG00000003463 C1QTNF6 (ENSCVAG00000003468) chst12a (ENSCVAG00000003482) ENSCVAG00000003545 ap5z1 (ENSCVAG00000000108) mmd2a (ENSCVAG00000003594) wipi2 (ENSCVAG00000003619) smurf1 (ENSCVAG00000003665) RNF216 (ENSCVAG00000003675) FSCN1 (ENSCVAG00000003683) ##21 ENSCVAG00000003692 ENSCVAG00000003701 ##22 TNRC18 (ENSCVAG00000003741) Poeciliinae ANCESTRAL SPECIES 1 ENSGT00740000115744 ENSGT00510000046773.a.b.c.a.j ENSGT00510000046773.a.b.c.a.i.b ENSGT00510000046773.a.b.c.a.i.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b.l ENSGT00390000002762.a.b.k ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 Platyfish MODERN SPECIES 7 mief1 (ENSXMAG00000001151) ENSXMAG00000026576 mpst (ENSXMAG00000001146) ENSXMAG00000001134 il2rb (ENSXMAG00000001127) ENSXMAG00000001125 chst12a (ENSXMAG00000026379) CARD11 (ENSXMAG00000001085) ap5z1 (ENSXMAG00000001068) MMD2 (ENSXMAG00000028136) wipi2 (ENSXMAG00000001048) smurf1 (ENSXMAG00000001013) ENSXMAG00000024191 RNF216 (ENSXMAG00000001006) FSCN1 (ENSXMAG00000000999) ##21 ENSXMAG00000000982 ##22 TNRC18 (ENSXMAG00000000969) slc29a4a (ENSXMAG00000025766) cpsf4 (ENSXMAG00000024670) atp5mf (ENSXMAG00000022540) shmt1 (ENSXMAG00000003644) pdap1b (ENSXMAG00000003656) bud31 (ENSXMAG00000003664) smcr8a (ENSXMAG00000003670) TOP3A (ENSXMAG00000003671) cbx7a (ENSXMAG00000024328) EP300 (ENSXMAG00000003691) xpnpep3 (ENSXMAG00000003707) st13 (ENSXMAG00000003718) rbx1 (ENSXMAG00000025913) ENSXMAG00000025962 Poecilia ANCESTRAL SPECIES 18 ENSGT00740000115744 ENSGT00510000046773.a.b.c.a.j ENSGT00510000046773.a.b.c.a.i.b ENSGT00510000046773.a.b.c.a.i.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b.l ENSGT00390000002762.a.b.k ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 Guppy MODERN SPECIES 460 mpst (ENSPREG00000018653) mpst (ENSPREG00000018638) mpst (ENSPREG00000018626) ENSPREG00000018610 ENSPREG00000018591 ENSPREG00000018579 chst12a (ENSPREG00000018573) ENSPREG00000018562 ENSPREG00000018546 ap5z1 (ENSPREG00000018514) MMD2 (ENSPREG00000018489) wipi2 (ENSPREG00000018468) smurf1 (ENSPREG00000018426) ENSPREG00000018368 FSCN1 (ENSPREG00000018339) ##21 actb (ENSPREG00000018292) ##22 TNRC18 (ENSPREG00000018258) slc29a4a (ENSPREG00000018228) atp5mf (ENSPREG00000018180) cpsf4 (ENSPREG00000018166) shmt1 (ENSPREG00000018149) pdap1b (ENSPREG00000018130) bud31 (ENSPREG00000018122) smcr8a (ENSPREG00000018112) TOP3A (ENSPREG00000018044) ENSPREG00000018018 EP300 (ENSPREG00000017942) xpnpep3 (ENSPREG00000017918) st13 (ENSPREG00000017893) rbx1 (ENSPREG00000017818) rangap1a (ENSPREG00000017770) NAME_6 ANCESTRAL SPECIES 63 ENSGT00390000013127.a ENSGT00740000115744 ENSGT00510000046773.a.b.c.a.j ENSGT00510000046773.a.b.c.a.i.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b.l ENSGT00390000002762.a.b.k ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 Sailfin molly MODERN SPECIES 819 ap5z1 (ENSPLAG00000007487) MMD2 (ENSPLAG00000007502) wipi2 (ENSPLAG00000007541) smurf1 (ENSPLAG00000007577) RNF216 (ENSPLAG00000007589) FSCN1 (ENSPLAG00000000158) ##21 ENSPLAG00000007645 ##22 TNRC18 (ENSPLAG00000007676) Amazon molly MODERN SPECIES 600 nqo1 (ENSPFOG00000015593) GABARAPL2 (ENSPFOG00000015577) ENSPFOG00000015568 rpl12 (ENSPFOG00000015551) pole3 (ENSPFOG00000015535) kmt5b (ENSPFOG00000015505) cd82a (ENSPFOG00000015431) wipi2 (ENSPFOG00000015370) smurf1 (ENSPFOG00000015224) RNF216 (ENSPFOG00000015172) FSCN1 (ENSPFOG00000015146) ##21 ENSPFOG00000015123 ##22 TNRC18 (ENSPFOG00000015023) slc29a4a (ENSPFOG00000014964) atp5mf (ENSPFOG00000014956) cpsf4 (ENSPFOG00000014912) shmt1 (ENSPFOG00000014911) shmt1 (ENSPFOG00000014784) pdap1b (ENSPFOG00000014776) bud31 (ENSPFOG00000014763) smcr8a (ENSPFOG00000014749) TOP3A (ENSPFOG00000014577) cbx7a (ENSPFOG00000014553) EP300 (ENSPFOG00000014408) xpnpep3 (ENSPFOG00000014371) st13 (ENSPFOG00000014319) rbx1 (ENSPFOG00000014301) Aplocheiloidei ANCESTRAL SPECIES 30 ENSGT00940000155733.a.b ENSGT00390000013127.a ENSGT00740000115744 ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00940000177422 ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Mangrove rivulus MODERN SPECIES 37 ENSKMAG00000016377 mpst (ENSKMAG00000016365) mpst (ENSKMAG00000016347) mpst (ENSKMAG00000016335) ENSKMAG00000016317 ENSKMAG00000016305 C1QTNF6 (ENSKMAG00000016291) chst12a (ENSKMAG00000016278) CARD11 (ENSKMAG00000016241) ap5z1 (ENSKMAG00000016203) mmd2a (ENSKMAG00000016187) wipi2 (ENSKMAG00000016149) smurf1 (ENSKMAG00000016086) RNF216 (ENSKMAG00000016053) FSCN1 (ENSKMAG00000016031) ##21 ENSKMAG00000016009 ##22 TNRC18 (ENSKMAG00000015814) slc29a4a (ENSKMAG00000015698) atp5mf (ENSKMAG00000015662) cpsf4 (ENSKMAG00000015642) shmt1 (ENSKMAG00000015600) shmt1 (ENSKMAG00000015534) pdap1b (ENSKMAG00000015491) bud31 (ENSKMAG00000015481) smcr8a (ENSKMAG00000015470) TOP3A (ENSKMAG00000015416) ENSKMAG00000015385 EP300 (ENSKMAG00000015334) xpnpep3 (ENSKMAG00000015289) st13 (ENSKMAG00000015212) rbx1 (ENSKMAG00000015160) Turquoise killifish MODERN SPECIES 1612 mpst (ENSNFUG00015002965) Nfu_g_1_019808 (ENSNFUG00015002970) UBE2I (ENSNFUG00015002972) ENSNFUG00015002975 ENSNFUG00015002980 C1QTNF6A (ENSNFUG00015002982) CHST12A (ENSNFUG00015002983) CARD11 (ENSNFUG00015002989) ap5z1 (ENSNFUG00015003007) ENSNFUG00015003024 MMD2 (ENSNFUG00015003032) WIPI2 (ENSNFUG00015003056) SMURF1 (ENSNFUG00015003090) RNF216 (ENSNFUG00015003175) FSCN1A (ENSNFUG00015003183) ##21 ENSNFUG00015003210 ##22 TNRC18 (ENSNFUG00015003248) slc29a4a (ENSNFUG00015003258) ENSNFUG00015003269 AL928657.1 (ENSNFUG00015003273) CPSF4 (ENSNFUG00015003278) shmt1 (ENSNFUG00015003312) PDAP1B (ENSNFUG00015003354) BUD31 (ENSNFUG00015003359) SMCR8A (ENSNFUG00015003364) TOP3A (ENSNFUG00015003386) cbx7a (ENSNFUG00015003485) ENSNFUG00015003503 ENSNFUG00015003562 XPNPEP3 (ENSNFUG00015003571) ST13 (ENSNFUG00015003586) Percomorphaceae_C ANCESTRAL SPECIES ENSGT01030000234887 ENSGT00740000115744 ENSGT00510000046773.a.b.d ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Eupercaria ANCESTRAL SPECIES 3 ENSGT00990000209944 ENSGT00510000046773.a.b.d ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000160705.C.b ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Tetraodontidae ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.e.a ##22 Tetraodon MODERN SPECIES 26 napsa (ENSTNIG00000011494) mief1 (ENSTNIG00000011493) ENSTNIG00000011492 ENSTNIG00000006419 TST (ENSTNIG00000002305) mpst (ENSTNIG00000006420) ube2ib (ENSTNIG00000006421) ENSTNIG00000001793 ENSTNIG00000006422 chst12a (ENSTNIG00000006423) ENSTNIG00000006424 ENSTNIG00000006425 wipi2 (ENSTNIG00000004327) SMURF1 (ENSTNIG00000014247) FSCN1 (ENSTNIG00000014246) ##21 ENSTNIG00000007002 ##22 ENSTNIG00000007001 ENSTNIG00000003695 slc29a4a (ENSTNIG00000003694) atp5mf (ENSTNIG00000006264) atp5mf (ENSTNIG00000003693) cpsf4 (ENSTNIG00000006265) shmt1 (ENSTNIG00000006266) bud31 (ENSTNIG00000006267) smcr8a (ENSTNIG00000006268) TOP3A (ENSTNIG00000006269) cbx7a (ENSTNIG00000006270) EP300 (ENSTNIG00000005094) xpnpep3 (ENSTNIG00000005095) st13 (ENSTNIG00000005096) rbx1 (ENSTNIG00000005097) Eupecaria_A ANCESTRAL SPECIES 5 ENSGT00970000196672 ENSGT00990000209944 ENSGT00510000046773.a.b.d ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Ballan wrasse MODERN SPECIES 394 ENSLBEG00000010639 TST (ENSLBEG00000010607) mpst (ENSLBEG00000010592) ube2ib (ENSLBEG00000010563) ENSLBEG00000010526 ENSLBEG00000010483 chst12a (ENSLBEG00000010386) CARD11 (ENSLBEG00000010287) ap5z1 (ENSLBEG00000010211) mmd2a (ENSLBEG00000010108) ENSLBEG00000010076 wipi2 (ENSLBEG00000010024) smurf1 (ENSLBEG00000009908) ENSLBEG00000009850 FSCN1 (ENSLBEG00000009785) ##21 ENSLBEG00000009731 ##22 ENSLBEG00000009689 Eupecaria_B ANCESTRAL SPECIES ENSGT00970000196672 ENSGT00990000209944 ENSGT00510000046773.a.b.d ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Perciformes ANCESTRAL SPECIES 1 ENSGT00990000209944 ENSGT00510000046773.a.b.d ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000160705.C.b ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099.d ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Perciformes_a ANCESTRAL SPECIES 1 ENSGT00990000209944 ENSGT00950000183045.A.b ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000160705.C.b ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099.d ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Channel bull blenny MODERN SPECIES 22 ENSCGOG00000001803 TST (ENSCGOG00000001809) mpst (ENSCGOG00000001816) ube2ib (ENSCGOG00000001819) il2rb (ENSCGOG00000001900) ENSCGOG00000001903 chst12a (ENSCGOG00000001904) CARD11 (ENSCGOG00000001917) ap5z1 (ENSCGOG00000002086) MMD2 (ENSCGOG00000002155) wipi2 (ENSCGOG00000002192) ENSCGOG00000002827 smurf1 (ENSCGOG00000002905) ENSCGOG00000003967 FSCN1 (ENSCGOG00000004005) ##21 actb2 (ENSCGOG00000004016) ##22 ENSCGOG00000004726 slc29a4a (ENSCGOG00000004740) cpsf4 (ENSCGOG00000004795) atp5mf (ENSCGOG00000004791) shmt1 (ENSCGOG00000004877) pdap1b (ENSCGOG00000006059) bud31 (ENSCGOG00000006063) smcr8a (ENSCGOG00000006070) TOP3A (ENSCGOG00000006110) ENSCGOG00000007162 EP300 (ENSCGOG00000007191) xpnpep3 (ENSCGOG00000008535) st13 (ENSCGOG00000008674) rbx1 (ENSCGOG00000008684) ENSCGOG00000008708 Pike perch MODERN SPECIES 38 ENSSLUG00000007945 ENSSLUG00000007941 mpst (ENSSLUG00000007940) ube2ib (ENSSLUG00000007925) il2rb (ENSSLUG00000007917) ENSSLUG00000007912 chst12a (ENSSLUG00000007909) CARD11 (ENSSLUG00000007480) ap5z1 (ENSSLUG00000007091) MMD2 (ENSSLUG00000007019) wipi2 (ENSSLUG00000006792) ENSSLUG00000006719 smurf1 (ENSSLUG00000004895) RNF216 (ENSSLUG00000004798) FSCN1 (ENSSLUG00000004784) ##21 ENSSLUG00000004774 ##22 ENSSLUG00000004760 slc29a4a (ENSSLUG00000004736) atp5mf (ENSSLUG00000004711) cpsf4 (ENSSLUG00000004689) shmt1 (ENSSLUG00000004456) pdap1b (ENSSLUG00000004402) bud31 (ENSSLUG00000004387) smcr8a (ENSSLUG00000004379) TOP3A (ENSSLUG00000002501) cbx7a (ENSSLUG00000002361) EP300 (ENSSLUG00000001890) xpnpep3 (ENSSLUG00000001728) st13 (ENSSLUG00000001707) rbx1 (ENSSLUG00000001701) ENSSLUG00000001677 Cottioidei ANCESTRAL SPECIES 1 ENSGT00390000013127.a ENSGT00740000115744 ENSGT00990000209944 ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099.d ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Lumpfish MODERN SPECIES 23 ENSCLMG00005012357 ENSCLMG00005012356 ENSCLMG00005012355 mpst (ENSCLMG00005012354) ube2ib (ENSCLMG00005012352) il2rb (ENSCLMG00005012351) ENSCLMG00005012350 chst12a (ENSCLMG00005012349) ENSCLMG00005012297 ap5z1 (ENSCLMG00005012231) MMD2 (ENSCLMG00005012147) wipi2 (ENSCLMG00005012140) smurf1 (ENSCLMG00005010392) RNF216 (ENSCLMG00005010369) FSCN1 (ENSCLMG00005010366) ##21 ENSCLMG00005010364 ##22 ENSCLMG00005010361 slc29a4a (ENSCLMG00005010359) atp5mf (ENSCLMG00005010357) cpsf4 (ENSCLMG00005010356) shmt1 (ENSCLMG00005006932) pdap1b (ENSCLMG00005006885) bud31 (ENSCLMG00005006882) smcr8a (ENSCLMG00005006880) TOP3A (ENSCLMG00005005202) cbx7a (ENSCLMG00005005188) ENSCLMG00005005172 xpnpep3 (ENSCLMG00005005139) st13 (ENSCLMG00005005126) rbx1 (ENSCLMG00005005119) ENSCLMG00005005112 Stickleback MODERN SPECIES 10 ENSGACG00000008053 mpst (ENSGACG00000008039) ENSGACG00000008012 il2rb (ENSGACG00000008005) ENSGACG00000008001 chst12a (ENSGACG00000007992) CARD11 (ENSGACG00000007978) ap5z1 (ENSGACG00000007962) mmd2a (ENSGACG00000007947) wipi2 (ENSGACG00000007931) ENSGACG00000007926 smurf1 (ENSGACG00000007912) ENSGACG00000007911 ENSGACG00000007906 FSCN1 (ENSGACG00000007892) ##21 ENSGACG00000007836 ##22 ENSGACG00000007822 ENSGACG00000007811 slc29a4a (ENSGACG00000007807) atp5mf (ENSGACG00000007796) cpsf4 (ENSGACG00000007792) shmt1 (ENSGACG00000007764) bud31 (ENSGACG00000007759) smcr8a (ENSGACG00000007755) TOP3A (ENSGACG00000007735) cbx7a (ENSGACG00000007724) EP300 (ENSGACG00000007707) xpnpep3 (ENSGACG00000007684) st13 (ENSGACG00000007663) rbx1 (ENSGACG00000007657) ENSGACG00000007654 Eupecaria_C ANCESTRAL SPECIES 17 ENSGT00970000196672 ENSGT00990000209944 ENSGT00510000046773.a.b.d ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Gilthead seabream MODERN SPECIES 15 ENSSAUG00010016342 ENSSAUG00010016340 mpst (ENSSAUG00010016339) ENSSAUG00010016334 ENSSAUG00010016333 ENSSAUG00010016332 chst12a (ENSSAUG00010016330) ENSSAUG00010016310 ap5z1 (ENSSAUG00010016205) mmd2a (ENSSAUG00010016193) wipi2 (ENSSAUG00010017739) ENSSAUG00010017732 smurf1 (ENSSAUG00010015946) RNF216 (ENSSAUG00010015458) FSCN1 (ENSSAUG00010015448) ##21 ENSSAUG00010015428 ##22 TNRC18 (ENSSAUG00010015422) slc29a4a (ENSSAUG00010015410) atp5mf (ENSSAUG00010015404) cpsf4 (ENSSAUG00010015402) shmt1 (ENSSAUG00010015227) pdap1b (ENSSAUG00010015210) bud31 (ENSSAUG00010015207) smcr8a (ENSSAUG00010015206) TOP3A (ENSSAUG00010015097) cbx7a (ENSSAUG00010015081) EP300 (ENSSAUG00010013614) xpnpep3 (ENSSAUG00010013589) st13 (ENSSAUG00010013492) rbx1 (ENSSAUG00010013490) ENSSAUG00010013488 Eupercaria_incertae_sedis ANCESTRAL SPECIES 35 ENSGT00970000196672 ENSGT00990000209944 ENSGT00510000046773.a.b.d ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Large yellow croaker MODERN SPECIES 483 ENSLCRG00005008461 TST (ENSLCRG00005008462) mpst (ENSLCRG00005008463) ENSLCRG00005008466 il2rb (ENSLCRG00005008470) C1QTNF6 (ENSLCRG00005008472) chst12a (ENSLCRG00005008473) CARD11 (ENSLCRG00005008474) ap5z1 (ENSLCRG00005008483) mmd2a (ENSLCRG00005008949) wipi2 (ENSLCRG00005008952) ENSLCRG00005008973 smurf1 (ENSLCRG00005008991) RNF216 (ENSLCRG00005009608) FSCN1 (ENSLCRG00005009652) ##21 ENSLCRG00005009660 ##22 TNRC18 (ENSLCRG00005009693) slc29a4a (ENSLCRG00005009699) atp5mf (ENSLCRG00005009727) cpsf4 (ENSLCRG00005009728) shmt1 (ENSLCRG00005009735) pdap1b (ENSLCRG00005011336) bud31 (ENSLCRG00005011339) smcr8a (ENSLCRG00005011345) TOP3A (ENSLCRG00005011370) cbx7a (ENSLCRG00005011778) EP300 (ENSLCRG00005011793) xpnpep3 (ENSLCRG00005012027) st13 (ENSLCRG00005012219) rbx1 (ENSLCRG00005012224) ENSLCRG00005012225 European seabass MODERN SPECIES 21 ENSDLAG00005029048 ENSDLAG00005028464 ENSDLAG00005004924 mpst (ENSDLAG00005004928) ENSDLAG00005004936 il2rb (ENSDLAG00005031516) ENSDLAG00005005000 ENSDLAG00005005025 ap5z1 (ENSDLAG00005005205) MMD2 (ENSDLAG00005033203) wipi2 (ENSDLAG00005005248) ENSDLAG00005005438 smurf1 (ENSDLAG00005005887) RNF216 (ENSDLAG00005006912) FSCN1 (ENSDLAG00005007046) ##21 ENSDLAG00005028561 ##22 TNRC18 (ENSDLAG00005007088) slc29a4a (ENSDLAG00005007426) ENSDLAG00005007485 cpsf4 (ENSDLAG00005030914) ENSDLAG00005007543 ENSDLAG00005007959 ENSDLAG00005007986 ENSDLAG00005008007 cbx7a (ENSDLAG00005008257) EP300 (ENSDLAG00005008265) xpnpep3 (ENSDLAG00005031557) st13 (ENSDLAG00005008416) ENSDLAG00005008437 RANGAP1 (ENSDLAG00005008464) ZC3H7B (ENSDLAG00005008571) Percomorphaceae_D ANCESTRAL SPECIES 1 ENSGT01030000234887 ENSGT00740000115744 ENSGT00510000046773.a.b.d ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Anabantaria ANCESTRAL SPECIES 6 ENSGT00390000013127.a ENSGT00970000196672 ENSGT00950000183045.A.b ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Anabantoidei ANCESTRAL SPECIES 7 ENSGT00390000013127.a ENSGT00970000196672 ENSGT00950000183045.A.b ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Climbing perch MODERN SPECIES 21 ENSATEG00000030156 ENSATEG00000025808 mpst (ENSATEG00000028103) ENSATEG00000006302 il2rb (ENSATEG00000006333) ENSATEG00000006340 ENSATEG00000006352 ENSATEG00000006382 ap5z1 (ENSATEG00000006503) MMD2 (ENSATEG00000006514) wipi2 (ENSATEG00000006552) ENSATEG00000006606 smurf1 (ENSATEG00000006799) ENSATEG00000006873 ENSATEG00000006883 ##21 ENSATEG00000006911 ##22 ENSATEG00000006938 slc29a4a (ENSATEG00000006954) ENSATEG00000028258 cpsf4 (ENSATEG00000006994) shmt1 (ENSATEG00000007061) ENSATEG00000007106 bud31 (ENSATEG00000007134) ENSATEG00000007153 ENSATEG00000007160 cbx7a (ENSATEG00000028506) ENSATEG00000007245 xpnpep3 (ENSATEG00000007507) st13 (ENSATEG00000007540) rbx1 (ENSATEG00000007548) ENSATEG00000007562 Zig-zag eel MODERN SPECIES 22 ENSMAMG00000025452 ENSMAMG00000025261 mpst (ENSMAMG00000026004) ENSMAMG00000005676 il2rb (ENSMAMG00000005698) ENSMAMG00000005704 ENSMAMG00000025120 ENSMAMG00000005729 ap5z1 (ENSMAMG00000005791) MMD2 (ENSMAMG00000005812) wipi2 (ENSMAMG00000005834) ENSMAMG00000005888 smurf1 (ENSMAMG00000005989) RNF216 (ENSMAMG00000006051) FSCN1 (ENSMAMG00000006071) ##21 ENSMAMG00000006109 ##22 TNRC18 (ENSMAMG00000006142) slc29a4a (ENSMAMG00000006177) ENSMAMG00000006221 cpsf4 (ENSMAMG00000006244) shmt1 (ENSMAMG00000006285) ENSMAMG00000006324 bud31 (ENSMAMG00000006354) ENSMAMG00000006366 ENSMAMG00000006374 cbx7a (ENSMAMG00000006424) ENSMAMG00000006590 ENSMAMG00000006706 xpnpep3 (ENSMAMG00000006750) st13 (ENSMAMG00000006767) rbx1 (ENSMAMG00000006789) Carangaria ANCESTRAL SPECIES 4 ENSGT00740000115744 ENSGT00510000046773.a.b.d ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000160705.C.b ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Carangaria_A ANCESTRAL SPECIES 12 ENSGT00390000013127.a ENSGT00740000115744 ENSGT00510000046773.a.b.d ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000156614.b ENSGT00940000158573 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Barramundi perch MODERN SPECIES 147 TST (ENSLCAG00010009666) mpst (ENSLCAG00010009670) ENSLCAG00010009675 ENSLCAG00010009694 ENSLCAG00010009698 chst12a (ENSLCAG00010009699) ENSLCAG00010009702 ENSLCAG00010009712 ap5z1 (ENSLCAG00010009758) MMD2 (ENSLCAG00010009861) wipi2 (ENSLCAG00010009871) ENSLCAG00010009895 smurf1 (ENSLCAG00010010006) RNF216 (ENSLCAG00010010434) FSCN1 (ENSLCAG00010010462) ##21 ENSLCAG00010010498 ##22 TNRC18 (ENSLCAG00010010662) slc29a4a (ENSLCAG00010010671) atp5mf (ENSLCAG00010010678) cpsf4 (ENSLCAG00010010683) shmt1 (ENSLCAG00010010699) pdap1b (ENSLCAG00010010730) bud31 (ENSLCAG00010010738) smcr8a (ENSLCAG00010010747) TOP3A (ENSLCAG00010010786) cbx7a (ENSLCAG00010010903) EP300 (ENSLCAG00010010925) xpnpep3 (ENSLCAG00010011016) st13 (ENSLCAG00010011035) rbx1 (ENSLCAG00010011043) ENSLCAG00010011070 Seriola ANCESTRAL SPECIES 23 ENSGT00940000155733.a.b ENSGT00390000013127.a ENSGT00740000115744 ENSGT00510000046773.a.b.d ENSGT00510000046773.a.b.c.a ENSGT00550000075088.a.b ENSGT00510000049239.a.c ENSGT00940000160396 ENSGT00940000154598 ENSGT00390000017592 ENSGT00940000157972.c ENSGT00940000155537 ENSGT00940000158690 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00390000002762.a.b ENSGT00390000018509.a ENSGT00390000014300 ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000158365.f.b ENSGT00940000155497.a.a ENSGT00940000153657.A ENSGT00390000001347 ENSGT00940000155618 ENSGT00940000165277.b Greater amberjack MODERN SPECIES 90 ENSSDUG00000018187 mpst (ENSSDUG00000018202) ENSSDUG00000018210 il2rb (ENSSDUG00000018223) ENSSDUG00000018239 papola (ENSSDUG00000018247) chst12a (ENSSDUG00000018290) ENSSDUG00000018311 ap5z1 (ENSSDUG00000018384) mmd2a (ENSSDUG00000018411) wipi2 (ENSSDUG00000018440) ENSSDUG00000018482 smurf1 (ENSSDUG00000018578) RNF216 (ENSSDUG00000018678) FSCN1 (ENSSDUG00000018700) ##21 ENSSDUG00000018712 ##22 TNRC18 (ENSSDUG00000018737) slc29a4a (ENSSDUG00000018852) atp5mf (ENSSDUG00000018902) cpsf4 (ENSSDUG00000018887) shmt1 (ENSSDUG00000018925) pdap1b (ENSSDUG00000018958) bud31 (ENSSDUG00000018971) smcr8a (ENSSDUG00000018983) TOP3A (ENSSDUG00000018992) cbx7a (ENSSDUG00000019053) EP300 (ENSSDUG00000019084) xpnpep3 (ENSSDUG00000019212) st13 (ENSSDUG00000000080) rbx1 (ENSSDUG00000000109) ENSSDUG00000000118 Yellowtail amberjack MODERN SPECIES 3280 FSCN1 (ENSSLDG00000019505) ##21 ENSSLDG00000019482 ##22 TNRC18 (ENSSLDG00000019179) slc29a4a (ENSSLDG00000019119) atp5mf (ENSSLDG00000019105) cpsf4 (ENSSLDG00000019078) shmt1 (ENSSLDG00000019048) pdap1b (ENSSLDG00000019036) bud31 (ENSSLDG00000019020) smcr8a (ENSSLDG00000019009) TOP3A (ENSSLDG00000018973) cbx7a (ENSSLDG00000018956) EP300 (ENSSLDG00000018909) xpnpep3 (ENSSLDG00000018834) st13 (ENSSLDG00000018807) rbx1 (ENSSLDG00000018791) ENSSLDG00000018769 Pleuronectoidei ANCESTRAL SPECIES 26 ENSGT00940000163566.a.a ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00950000183249 ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.e.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000167865 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a Turbot MODERN SPECIES 20 ENSSMAG00000021545 ##21 ENSSMAG00000000565 ENSSMAG00000000544 ENSSMAG00000000536 ENSSMAG00000000530 ENSSMAG00000021482 ENSSMAG00000000520 ENSSMAG00000037037 TRIP10 (ENSSMAG00000000331) ENSSMAG00000000306 VAV1 (ENSSMAG00000000269) ENSSMAG00000000260 ENSSMAG00000000252 ENSSMAG00000000242 ENSSMAG00000029471 actb1 (ENSSMAG00000000233) ##22 fbxl18 (ENSSMAG00000000229) ENSSMAG00000000218 ENSSMAG00000000211 smcr8b (ENSSMAG00000000203) mief2 (ENSSMAG00000000199) alkbh5 (ENSSMAG00000000195) ENSSMAG00000030960 ENSSMAG00000000181 ENSSMAG00000033041 ENSSMAG00000000164 ENSSMAG00000000159 ENSSMAG00000000155 ENSSMAG00000000139 ENSSMAG00000000119 ENSSMAG00000000104 Tongue sole MODERN SPECIES 8 ENSCSEG00000006255 mpst (ENSCSEG00000006250) ENSCSEG00000006232 mpst (ENSCSEG00000006230) ENSCSEG00000006210 ENSCSEG00000006203 chst12a (ENSCSEG00000006200) CARD11 (ENSCSEG00000006194) ap5z1 (ENSCSEG00000006177) mmd2a (ENSCSEG00000006170) wipi2 (ENSCSEG00000006152) ENSCSEG00000006134 smurf1 (ENSCSEG00000006119) ENSCSEG00000019168 FSCN1 (ENSCSEG00000019160) ##21 actb (ENSCSEG00000019142) ##22 ENSCSEG00000019119 ENSCSEG00000019109 slc29a4a (ENSCSEG00000019097) atp5mf (ENSCSEG00000019090) cpsf4 (ENSCSEG00000019055) ENSCSEG00000019045 GRIN2A (ENSCSEG00000019030) ENSCSEG00000018821 emp2 (ENSCSEG00000018813) nubp1 (ENSCSEG00000018797) CIITA (ENSCSEG00000018788) dexi (ENSCSEG00000018784) CLEC16A (ENSCSEG00000018748) socs1a (ENSCSEG00000018742) PRKCB (ENSCSEG00000018731) Pinecone sodierfish DUPLICATION Pinecone sodierfish MODERN SPECIES 22 ENSMMDG00005010975 TST (ENSMMDG00005010973) mpst (ENSMMDG00005010971) ENSMMDG00005010965 il2rb (ENSMMDG00005010957) ENSMMDG00005010954 ENSMMDG00005010953 chst12a (ENSMMDG00005010951) CARD11 (ENSMMDG00005010434) ap5z1 (ENSMMDG00005010407) mmd2a (ENSMMDG00005010351) wipi2 (ENSMMDG00005010188) ENSMMDG00005010170 smurf1 (ENSMMDG00005006730) FSCN1 (ENSMMDG00005006675) ##21 ENSMMDG00005006671 ##22 TNRC18 (ENSMMDG00005006669) slc29a4a (ENSMMDG00005006664) atp5mf (ENSMMDG00005006656) cpsf4 (ENSMMDG00005006647) shmt1 (ENSMMDG00005005341) pdap1b (ENSMMDG00005005282) bud31 (ENSMMDG00005005279) smcr8a (ENSMMDG00005005274) TOP3A (ENSMMDG00005002336) cbx7a (ENSMMDG00005002281) EP300 (ENSMMDG00005002268) xpnpep3 (ENSMMDG00005002129) st13 (ENSMMDG00005002112) rbx1 (ENSMMDG00005002108) ENSMMDG00005002106 Pinecone sodierfish MODERN SPECIES ENSMMDG00005000848 FSCN1 (ENSMMDG00005000853) ##21 ENSMMDG00005000855 PLK1 (ENSMMDG00005000859) ENSMMDG00005000867 rdh8b (ENSMMDG00005000869) col5a3b (ENSMMDG00005000888) olfm2b (ENSMMDG00005000905) ENSMMDG00005000926 TRIP10 (ENSMMDG00005000933) ENSMMDG00005000968 VAV1 (ENSMMDG00005000975) UBL5 (ENSMMDG00005001035) pin1 (ENSMMDG00005001037) ENSMMDG00005001042 ENSMMDG00005001059 ##22 fbxl18 (ENSMMDG00005001716) PTCD1 (ENSMMDG00005001724) zgc:112980 (ENSMMDG00005001733) smcr8b (ENSMMDG00005001743) mief2 (ENSMMDG00005001756) alkbh5 (ENSMMDG00005001762) ENSMMDG00005001768 ENSMMDG00005001774 GRIN2A (ENSMMDG00005001791) ENSMMDG00005001834 hapstr1b (ENSMMDG00005001839) abcg2b (ENSMMDG00005001846) ENSMMDG00005001849 ENSMMDG00005001852 arpc1b (ENSMMDG00005001863) Euteleosteomorpha ANCESTRAL SPECIES 339 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00950000182935.B.b.d.b Protacanthopterygii ANCESTRAL SPECIES 117 ENSGT00390000017551 ENSGT00940000157636 ENSGT00940000157747.c.b ENSGT00940000156254.o.a ENSGT00940000157932.m.b ENSGT00940000159416 ENSGT00950000182803.A.a.a.c.b ENSGT00550000075029 ENSGT00530000064157.a ENSGT00940000158025.a.b ENSGT00940000166046 ENSGT00940000157752 ENSGT00940000163566.a.a ENSGT00950000183157.a.a.b.d ##21 ENSGT00950000182960.a.a.b.f ##22 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000167865 ENSGT00950000182935.B.b.d.b Northern pike MODERN SPECIES 8 rgs11 (ENSELUG00000017089) pgap6 (ENSELUG00000017009) pdia2 (ENSELUG00000016971) ENSELUG00000016955 grapb (ENSELUG00000016934) ENSELUG00000033852 FAM83G (ENSELUG00000016879) SLC5A10 (ENSELUG00000016923) prpsap2 (ENSELUG00000016838) chtf18 (ENSELUG00000016810) gng13a (ENSELUG00000028544) zgc:136472 (ENSELUG00000016709) PLK1 (ENSELUG00000016673) rasd3 (ENSELUG00000016594) ENSELUG00000029168 ##21 actb1 (ENSELUG00000016560) ##22 fbxl18 (ENSELUG00000016524) PTCD1 (ENSELUG00000016517) zgc:112980 (ENSELUG00000034138) ENSELUG00000034088 smcr8b (ENSELUG00000016503) mief2 (ENSELUG00000016481) alkbh5 (ENSELUG00000016444) ENSELUG00000016403 syngr3b (ENSELUG00000016330) CACNA1H (ENSELUG00000031407) ENSELUG00000009350 ENSELUG00000009365 ENSELUG00000031562 ENSELUG00000009372 ENSELUG00000009375 Salmoninae ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.e.b ##22 Salmoninae_a ANCESTRAL SPECIES 143 ENSGT00980000202286 ENSGT00940000165626.m ENSGT00940000155366.b.b.c ENSGT00940000156254.o.a ENSGT00940000157932.m.b ENSGT00940000159416 ENSGT00550000075029.b ENSGT00550000075029.a.a ENSGT00530000064157.a ENSGT00940000158025.a.b ENSGT00940000166046.g ENSGT00940000157752 ENSGT00950000183157.a.a.b.d ##21 ENSGT00950000182960.a.a.b.f.a.b ##22 ENSGT00950000182960.a.a.b.f.a.a ##22 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000167865.d ENSGT00950000182935.B.b.d.b ENSGT00940000156666.n ENSGT00940000165262.f Oncorhynchus ANCESTRAL SPECIES 123 ENSGT00550000075029.a.a ENSGT00530000064157.a ENSGT00940000158025.a.b ENSGT00940000166046.g ENSGT00940000157752.p ENSGT00950000183157.a.a.b.d ##21 ENSGT00950000182960.a.a.b.f.a.b ##22 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT01050000244843.d.e.a.b.b ENSGT00940000163711.b.c.a.b.a.a ENSGT00930000151032.A.c.a.a ENSGT00950000182935.B.b.d.b.g ENSGT00940000156666.n.a Oncorhynchus_a ANCESTRAL SPECIES 188 ENSGT00940000158025.a.b ENSGT00940000166046.g ENSGT00940000157752.p ENSGT00950000183157.a.a.b.d ##21 ENSGT00950000182960.a.a.b.f.b ##22 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00930000151032.A.c.a.a ENSGT00940000163711.b.c.a.b.a.a ENSGT01050000244843.d.e.a.b.b ENSGT00390000009298 ENSGT00390000013127.b ENSGT00390000010052.b Chinook salmon MODERN SPECIES 1331 actb1 (ENSOTSG00005039547) ##22 fbxl18 (ENSOTSG00005039544) Acanthomorphata ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.e.b ##22 Euacanthomorphacea ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.e.b ##22 Percomorphaceae ANCESTRAL SPECIES 17 ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00950000183249 ENSGT00940000162394 ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.t ENSGT00940000182552 ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a Tiger tail seahorse MODERN SPECIES 518 ENSHCOG00000012204 mad1l1 (ENSHCOG00000011565) ELFN1 (ENSHCOG00000011553) VAV1 (ENSHCOG00000011487) UBL5 (ENSHCOG00000011460) pin1 (ENSHCOG00000011456) ENSHCOG00000011437 ENSHCOG00000011430 ##22 ENSHCOG00000011400 PLK1 (ENSHCOG00000011376) ENSHCOG00000011339 ttyh3b (ENSHCOG00000011321) ENSHCOG00000011268 ENSHCOG00000011040 arpc1a (ENSHCOG00000011030) arpc1b (ENSHCOG00000010998) ENSHCOG00000010966 ENSHCOG00000010858 ENSHCOG00000010830 alkbh5 (ENSHCOG00000010816) smcr8b (ENSHCOG00000010805) zgc:112980 (ENSHCOG00000010797) PTCD1 (ENSHCOG00000010784) Percomorphaceae_B ANCESTRAL SPECIES ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00950000183249 ENSGT00940000162394 ENSGT00940000159148.b ENSGT01060000248589.A.d ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000182552 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a Ovalentaria ANCESTRAL SPECIES ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000178300 ENSGT00950000183249 ENSGT00940000159148.b ENSGT01060000248589.A.d ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00990000204057 ENSGT00530000063725.p.f.d ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00950000182960.a.a.b.f ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 Ovalentaria_B ANCESTRAL SPECIES 4 ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000178300 ENSGT00950000183249 ENSGT00940000159148.b ENSGT01060000248589.A.d ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f.d ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a ENSGT00950000183183.b.b Cichlidae ANCESTRAL SPECIES 3 ENSGT00950000183157.a.a.b.d ##21 ENSGT00940000163566.a.a ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f.c.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000162658.b ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00940000177139 Pseudocrenilabrinae ANCESTRAL SPECIES 3 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f.d ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00530000063725.p.f.c.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00990000204818.a ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a ENSGT00950000183183.b.b Pseudocrenilabrinae_A DUPLICATION Pseudocrenilabrinae_A ANCESTRAL SPECIES 5 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f.d.h ENSGT00530000063725.p.f.c.a ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b.c #22 ENSGT00530000063725.p.f.c.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b.a ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00990000204818.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a Haplochromini ANCESTRAL SPECIES 3 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f.d.h ENSGT00530000063725.p.f.c.a ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b.c #22 ENSGT00530000063725.p.f.c.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b.a ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00990000204818.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000162658.b ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a Haplochromini_A ANCESTRAL SPECIES 2 ENSGT00940000154535.B ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f.d.h ENSGT00530000063725.p.f.c.a ENSGT00530000063725.p.f.d.g.b ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b.c #22 ENSGT00530000063725.p.f.c.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b.a ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00990000204818.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000162658.b ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00940000165949 Haplochromini_B ANCESTRAL SPECIES 8 ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f.d.h ENSGT00530000063725.p.f.c.a ENSGT00530000063725.p.f.d.g.b ENSGT00950000182996.b.b.c.b.b.a.b.c ENSGT00940000154664.h.n.c.e.d.a.b ENSGT00950000182960.a.a.a.b.c #22 ENSGT00530000063725.p.f.c.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b.a ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00990000204818.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000162658.b ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a ENSGT00950000183183.b.b Eastern happy MODERN SPECIES 18 pin1 (ENSACLG00000003231) ENSACLG00000003207 ENSACLG00000003192 ENSACLG00000003185 ENSACLG00000003171 ENSACLG00000003165 ENSACLG00000003149 ENSACLG00000003106 ENSACLG00000003066 ENSACLG00000003013 KLHL10 (ENSACLG00000002998) ENSACLG00000002975 ##22 ACTG1 (ENSACLG00000002912) #22 ENSACLG00000002873 ENSACLG00000002863 ENSACLG00000002849 ##22 fbxl18 (ENSACLG00000002840) PTCD1 (ENSACLG00000002824) zgc:112980 (ENSACLG00000002791) smcr8b (ENSACLG00000002784) mief2 (ENSACLG00000002732) alkbh5 (ENSACLG00000002713) ENSACLG00000002632 ENSACLG00000002598 ENSACLG00000002548 hapstr1b (ENSACLG00000002543) abcg2b (ENSACLG00000002540) ENSACLG00000002538 ENSACLG00000002517 ENSACLG00000002502 arpc1a (ENSACLG00000002471) Lyretail cichlid MODERN SPECIES 332 ENSNBRG00000010403 ENSNBRG00000010368 ##22 ENSNBRG00000010286 #22 ENSNBRG00000010238 ENSNBRG00000010223 ENSNBRG00000010199 ##22 fbxl18 (ENSNBRG00000010149) PTCD1 (ENSNBRG00000010079) ENSNBRG00000010048 ENSNBRG00000009990 smcr8b (ENSNBRG00000009980) mief2 (ENSNBRG00000009954) alkbh5 (ENSNBRG00000009936) ENSNBRG00000009919 ENSNBRG00000009910 ENSNBRG00000009863 hapstr1b (ENSNBRG00000009844) abcg2c (ENSNBRG00000009655) ENSNBRG00000009620 ENSNBRG00000009597 arpc1a (ENSNBRG00000009587) Pseudocrenilabrinae_A ANCESTRAL SPECIES 285 ENSGT00530000063725.p.f.d.g.a ENSGT00950000182960.a.a.b.e.b.b ##22 Lyretail cichlid MODERN SPECIES 332 ENSNBRG00000010403 ENSNBRG00000010368 ##22 ENSNBRG00000010286 #22 ENSNBRG00000010238 ENSNBRG00000010223 ENSNBRG00000010199 ##22 fbxl18 (ENSNBRG00000010149) PTCD1 (ENSNBRG00000010079) ENSNBRG00000010048 ENSNBRG00000009990 smcr8b (ENSNBRG00000009980) mief2 (ENSNBRG00000009954) alkbh5 (ENSNBRG00000009936) ENSNBRG00000009919 ENSNBRG00000009910 ENSNBRG00000009863 hapstr1b (ENSNBRG00000009844) Haplochromini ANCESTRAL SPECIES 318 ENSGT00530000063725.p.f.d.g.a ENSGT00950000182960.a.a.b.e.b.b ##22 Burton s mouthbrooder MODERN SPECIES 1679 ENSHBUG00000012742 ENSHBUG00000012709 ##22 Haplochromini_A ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.e.b.b ##22 P. nyererei MODERN SPECIES 560 ENSPNYG00000019869 ##22 ACTG1 (ENSPNYG00000019880) #22 ENSPNYG00000019906 ENSPNYG00000019919 ENSPNYG00000019942 ##22 fbxl18 (ENSPNYG00000019957) PTCD1 (ENSPNYG00000019993) ENSPNYG00000020019 smcr8b (ENSPNYG00000020109) mief2 (ENSPNYG00000020121) alkbh5 (ENSPNYG00000020156) MYO15A (ENSPNYG00000020186) ENSPNYG00000020316 ENSPNYG00000020364 hapstr1b (ENSPNYG00000020374) abcg2c (ENSPNYG00000020405) ENSPNYG00000020481 arpc1a (ENSPNYG00000020492) arpc1b (ENSPNYG00000020528) MMD2 (ENSPNYG00000020553) Haplochromini_B ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.e.b.b ##22 Zebra mbuna MODERN SPECIES 1109 TRIP10 (ENSMZEG00005013280) ENSMZEG00005013242 VAV1 (ENSMZEG00005013190) UBL5 (ENSMZEG00005013172) pin1 (ENSMZEG00005013165) pin1 (ENSMZEG00005013158) ENSMZEG00005013149 ENSMZEG00005013139 ENSMZEG00005013075 ENSMZEG00005013062 ENSMZEG00005013027 KLHL10 (ENSMZEG00005013011) ENSMZEG00005012969 #22 ENSMZEG00005012869 ENSMZEG00005012824 ENSMZEG00005012791 ##22 ACTB (ENSMZEG00005012760) ##22 PTCD1 (ENSMZEG00005012722) zgc:112980 (ENSMZEG00005012703) smcr8b (ENSMZEG00005012693) mief2 (ENSMZEG00005012679) alkbh5 (ENSMZEG00005012673) MYO15A (ENSMZEG00005012550) ENSMZEG00005012502 ENSMZEG00005012457 hapstr1b (ENSMZEG00005012443) abcg2b (ENSMZEG00005012411) ENSMZEG00005012398 ENSMZEG00005012389 arpc1a (ENSMZEG00005012370) arpc1b (ENSMZEG00005012346) Eastern happy MODERN SPECIES 18 ENSACLG00000003460 ENSACLG00000003350 VAV1 (ENSACLG00000003292) UBL5 (ENSACLG00000003272) pin1 (ENSACLG00000003231) ENSACLG00000003207 ENSACLG00000003192 ENSACLG00000003185 ENSACLG00000003171 ENSACLG00000003165 ENSACLG00000003149 ENSACLG00000003106 ENSACLG00000003066 ENSACLG00000003013 KLHL10 (ENSACLG00000002998) ENSACLG00000002975 ##22 ACTG1 (ENSACLG00000002912) #22 ENSACLG00000002873 ENSACLG00000002863 ENSACLG00000002849 ##22 fbxl18 (ENSACLG00000002840) PTCD1 (ENSACLG00000002824) zgc:112980 (ENSACLG00000002791) smcr8b (ENSACLG00000002784) mief2 (ENSACLG00000002732) alkbh5 (ENSACLG00000002713) ENSACLG00000002632 ENSACLG00000002598 ENSACLG00000002548 hapstr1b (ENSACLG00000002543) abcg2b (ENSACLG00000002540) Midas cichlid MODERN SPECIES 1004 ENSACIG00000018253 ENSACIG00000017987 ENSACIG00000017957 ENSACIG00000017943 ##22 fbxl18 (ENSACIG00000017899) PTCD1 (ENSACIG00000017861) smcr8b (ENSACIG00000017849) mief2 (ENSACIG00000017838) alkbh5 (ENSACIG00000017828) ENSACIG00000017815 ENSACIG00000017793 hapstr1b (ENSACIG00000017778) abcg2b (ENSACIG00000017725) ENSACIG00000017716 ENSACIG00000017707 arpc1a (ENSACIG00000017686) arpc1b (ENSACIG00000017664) MMD2 (ENSACIG00000017651) radil (ENSACIG00000017618) Pomacentridae ANCESTRAL SPECIES 8 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000178300 ENSGT00950000183249 ENSGT00940000159148.b ENSGT01060000248589.A.d ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00990000204057.a ENSGT00530000063725.p.e.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00940000153974.A ENSGT00940000175728 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a ENSGT00950000183183.b.b ENSGT00940000157972.d.d ENSGT00940000159293 Bicolor damselfish MODERN SPECIES 1045 ENSSPAG00000012654 MFAP4 (ENSSPAG00000012644) TRIP10 (ENSSPAG00000011465) ENSSPAG00000011354 VAV1 (ENSSPAG00000011208) UBL5 (ENSSPAG00000011192) pin1 (ENSSPAG00000011171) ENSSPAG00000011136 ENSSPAG00000011118 ENSSPAG00000011106 ENSSPAG00000011070 ENSSPAG00000011060 ##22 PTCD1 (ENSSPAG00000011049) smcr8b (ENSSPAG00000011035) mief2 (ENSSPAG00000011024) alkbh5 (ENSSPAG00000011009) ENSSPAG00000010989 ENSSPAG00000010976 ENSSPAG00000010963 Pomacentridae_A ANCESTRAL SPECIES 195 ENSGT00940000157752 ENSGT00390000014423 ENSGT00390000015109 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000178300 ENSGT00950000183249 ENSGT00940000159148.b ENSGT01060000248589.A.d ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00990000204057.a ENSGT00950000182960.a.a.b.e.b ##22 Amphiprion ANCESTRAL SPECIES 294 ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00950000182960.a.a.b.e.b ##22 Orange clownfish MODERN SPECIES 17 ENSAPEG00000011971 RPS6KB2 (ENSAPEG00000011904) ENSAPEG00000011844 ENSAPEG00000011772 ENSAPEG00000011765 ENSAPEG00000011756 ENSAPEG00000011718 OLFM2 (ENSAPEG00000011686) ENSAPEG00000011670 ENSAPEG00000011639 TRIP10 (ENSAPEG00000011594) ENSAPEG00000011483 VAV1 (ENSAPEG00000011348) UBL5 (ENSAPEG00000011322) pin1 (ENSAPEG00000011284) ENSAPEG00000011264 ##22 ENSAPEG00000011242 PLK1 (ENSAPEG00000011207) ENSAPEG00000011196 fbxl18 (ENSAPEG00000011189) rdh8b (ENSAPEG00000011180) ENSAPEG00000011162 rasd3 (ENSAPEG00000011147) ENSAPEG00000011100 ##21 ENSAPEG00000011080 ttyh3b (ENSAPEG00000011026) ENSAPEG00000010915 ENSAPEG00000010900 ENSAPEG00000010885 ENSAPEG00000010861 mad1l1 (ENSAPEG00000010848) Clown anemonefish MODERN SPECIES 653 TRIP10 (ENSAOCG00000022600) ENSAOCG00000022642 VAV1 (ENSAOCG00000022698) UBL5 (ENSAOCG00000022726) pin1 (ENSAOCG00000022743) ENSAOCG00000022767 ##22 ENSAOCG00000022782 ENSAOCG00000022797 PLK1 (ENSAOCG00000022832) fbxl18 (ENSAOCG00000022855) rdh8b (ENSAOCG00000022902) ENSAOCG00000001654 rasd3 (ENSAOCG00000022931) ENSAOCG00000022950 ##21 ENSAOCG00000022962 ttyh3b (ENSAOCG00000022992) ENSAOCG00000023007 ENSAOCG00000023020 ENSAOCG00000023026 ENSAOCG00000001661 ENSAOCG00000023039 Spiny chromis MODERN SPECIES 322 rdh8b (ENSAPOG00000007470) ENSAPOG00000007335 olfm2b (ENSAPOG00000007321) ENSAPOG00000007286 TRIP10 (ENSAPOG00000007271) ENSAPOG00000007248 VAV1 (ENSAPOG00000007170) UBL5 (ENSAPOG00000007043) pin1 (ENSAPOG00000007004) ENSAPOG00000006966 ENSAPOG00000006885 ENSAPOG00000006852 ##22 pdgfaa (ENSAPOG00000006826) dnaja3b (ENSAPOG00000006811) vasna (ENSAPOG00000006756) Atherinomorphae ANCESTRAL SPECIES 20 ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000178300 ENSGT00950000183249 ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f.d ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00390000002164.b ENSGT00940000177139 ENSGT00950000183183.b.a Oryzias ANCESTRAL SPECIES 15 ENSGT00950000183157.a.a.b.d ##21 ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00950000183249 ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f.d ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000177139 ENSGT00950000183183.b.a ENSGT00950000183183.b.b ENSGT00940000157972.d Oryzias_b ANCESTRAL SPECIES 21 ENSGT00950000183157.a.a.b.d ##21 ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00950000183249 ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f.d ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000177139 ENSGT00950000183183.b.a ENSGT00950000183183.b.b Indian medaka MODERN SPECIES 35 ENSOMEG00000020104 OLFM2 (ENSOMEG00000020163) MFAP4 (ENSOMEG00000020200) ENSOMEG00000020213 TRIP10 (ENSOMEG00000020273) ENSOMEG00000020299 ENSOMEG00000020324 ENSOMEG00000020340 ENSOMEG00000020356 UBL5 (ENSOMEG00000020396) pin1 (ENSOMEG00000020434) ENSOMEG00000020461 ENSOMEG00000020478 ENSOMEG00000020498 ENSOMEG00000020552 actb1 (ENSOMEG00000020586) ##22 fbxl18 (ENSOMEG00000020603) PTCD1 (ENSOMEG00000020627) ENSOMEG00000020666 ENSOMEG00000020754 mief2 (ENSOMEG00000020791) alkbh5 (ENSOMEG00000020820) MYO15A (ENSOMEG00000020933) ENSOMEG00000021095 hapstr1b (ENSOMEG00000021142) abcg2c (ENSOMEG00000021272) ENSOMEG00000000565 ENSOMEG00000021316 arpc1a (ENSOMEG00000021367) arpc1b (ENSOMEG00000021429) MMD2 (ENSOMEG00000021473) Oryzias_a ANCESTRAL SPECIES 26 ENSGT00950000183157.a.a.b.d ##21 ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00950000183249 ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f.d ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a ENSGT00950000183183.b.b ENSGT00940000157972.d Japanese Medaka HdrR MODERN SPECIES PLK1 (ENSORLG00000009603) ENSORLG00000024728 rdh8b (ENSORLG00000009566) ENSORLG00000022633 ENSORLG00000022665 ENSORLG00000024788 ENSORLG00000009484 ENSORLG00000009446 TRIP10 (ENSORLG00000009436) ENSORLG00000009393 VAV1 (ENSORLG00000009385) UBL5 (ENSORLG00000023784) pin1 (ENSORLG00000009334) ENSORLG00000019573 ENSORLG00000022786 actb1 (ENSORLG00000009309) ##22 fbxl18 (ENSORLG00000009288) PTCD1 (ENSORLG00000009275) ENSORLG00000009263 ENSORLG00000009252 mief2 (ENSORLG00000009240) alkbh5 (ENSORLG00000009235) ENSORLG00000030000 ENSORLG00000009184 ENSORLG00000027721 hapstr1b (ENSORLG00000022770) abcg2c (ENSORLG00000009145) ENSORLG00000024225 arpc1a (ENSORLG00000009096) arpc1b (ENSORLG00000009068) MMD2 (ENSORLG00000025252) Chinese medaka MODERN SPECIES 973 ENSOSIG00000016522 ttyh3b (ENSOSIG00000016520) ENSOSIG00000016516 ENSOSIG00000016514 ##21 PLK1 (ENSOSIG00000016380) ENSOSIG00000016377 rdh8b (ENSOSIG00000016376) OLFM2 (ENSOSIG00000016172) MFAP4 (ENSOSIG00000016168) TRIP10 (ENSOSIG00000016166) ENSOSIG00000016158 VAV1 (ENSOSIG00000016014) UBL5 (ENSOSIG00000016012) pin1 (ENSOSIG00000016011) ENSOSIG00000015974 actb1 (ENSOSIG00000015919) ##22 fbxl18 (ENSOSIG00000015916) PTCD1 (ENSOSIG00000015915) ENSOSIG00000015907 ENSOSIG00000015902 mief2 (ENSOSIG00000015901) alkbh5 (ENSOSIG00000015899) ENSOSIG00000015781 hapstr1b (ENSOSIG00000015764) abcg2c (ENSOSIG00000015227) ENSOSIG00000015222 ENSOSIG00000015221 arpc1a (ENSOSIG00000015220) arpc1b (ENSOSIG00000015215) ENSOSIG00000015214 Cyprinodontiformes ANCESTRAL SPECIES 18 ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000178300 ENSGT00950000183249 ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f.d ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000155366.b.b.d.a ENSGT00940000177139 ENSGT00950000183183.b.a Aplocheiloidei ANCESTRAL SPECIES 17 ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000178300 ENSGT00950000183249 ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f.d ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000177139 ENSGT00950000183183.b.a ENSGT00950000183183.b.b ENSGT00940000157972.d ENSGT00940000159293 Turquoise killifish MODERN SPECIES 1611 MFNG (ENSNFUG00015000571) TTYH3B (ENSNFUG00015000614) ENSNFUG00015000642 FSCN1 (ENSNFUG00015000667) ##21 PLK1 (ENSNFUG00015000714) PALB2 (ENSNFUG00015000754) rdh8b (ENSNFUG00015000766) OLFM2B (ENSNFUG00015000953) TRIP10 (ENSNFUG00015001050) ENSNFUG00015001300 VAV1 (ENSNFUG00015001308) UBL5 (ENSNFUG00015001318) pin1 (ENSNFUG00015001320) ENSNFUG00015001324 Nfu_g_1_007201 (ENSNFUG00015001337) ENSNFUG00015001349 ##22 GPR108 (ENSNFUG00015001508) ENSNFUG00015001781 CAMSAP3 (ENSNFUG00015001822) LPAR2B (ENSNFUG00015001847) ENSNFUG00015001853 ENSNFUG00015001866 akap8l (ENSNFUG00015001882) GLIS2 (ENSNFUG00015001896) ENSNFUG00015001910 ENSNFUG00015001915 ENSNFUG00015001922 ENSNFUG00015001930 Nfu_g_1_007107 (ENSNFUG00015001936) DCLK2 (ENSNFUG00015002191) ENSNFUG00015002852 Mangrove rivulus MODERN SPECIES PLK1 (ENSKMAG00000009205) ENSKMAG00000009182 rdh8b (ENSKMAG00000009171) ENSKMAG00000009144 ENSKMAG00000009130 ENSKMAG00000009120 OLFM2 (ENSKMAG00000009093) MFAP4 (ENSKMAG00000009058) TRIP10 (ENSKMAG00000009041) ENSKMAG00000009029 VAV1 (ENSKMAG00000008858) UBL5 (ENSKMAG00000008819) pin1 (ENSKMAG00000008796) ENSKMAG00000008781 ENSKMAG00000008767 ENSKMAG00000008747 ##22 fbxl18 (ENSKMAG00000008729) PTCD1 (ENSKMAG00000008708) ENSKMAG00000008693 ENSKMAG00000008664 mief2 (ENSKMAG00000008644) alkbh5 (ENSKMAG00000008615) MYO15A (ENSKMAG00000008445) ENSKMAG00000008300 hapstr1b (ENSKMAG00000008256) abcg2c (ENSKMAG00000008205) ENSKMAG00000008189 arpc1a (ENSKMAG00000008145) arpc1b (ENSKMAG00000008109) MMD2 (ENSKMAG00000008075) radil (ENSKMAG00000008034) Cyprinodontoidei ANCESTRAL SPECIES 24 ENSGT00950000183060.a.a.d.a ENSGT00940000163679 ENSGT00950000183157.a.a.b.d ##21 ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00950000183249 ENSGT00940000159148.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a ENSGT00950000183183.b.b Poeciliinae ANCESTRAL SPECIES 27 ENSGT00950000183060.a.a.d.a ENSGT00940000163679 ENSGT00950000183157.a.a.b.d ##21 ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00950000183249 ENSGT00940000159148.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00950000183183.b.a ENSGT00950000183183.b.b ENSGT00940000157972.d Poecilia ANCESTRAL SPECIES 31 ENSGT00950000183060.a.a.d.a ENSGT00940000163679 ENSGT00950000183157.a.a.b.d ##21 ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT01000000214708.a.b ENSGT00940000154535.B ENSGT00940000159148.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00950000183183.b.a ENSGT00950000183183.b.b ENSGT00940000157972.d NAME_6 ANCESTRAL SPECIES 294 ENSGT00940000154535.B ENSGT00940000159148.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a Amazon molly MODERN SPECIES 284 asah1b (ENSPFOG00000006888) frg1 (ENSPFOG00000006721) fat1a (ENSPFOG00000006025) mtnr1aa (ENSPFOG00000023633) ENSPFOG00000021844 cyp4v2a (ENSPFOG00000005945) ENSPFOG00000005883 SORBS2 (ENSPFOG00000005667) pdlim3a (ENSPFOG00000005597) NPY2R (ENSPFOG00000005587) ENSPFOG00000005305 VAV1 (ENSPFOG00000004862) UBL5 (ENSPFOG00000004822) pin1 (ENSPFOG00000004816) ENSPFOG00000004812 ENSPFOG00000004727 ##22 fbxl18 (ENSPFOG00000004651) PTCD1 (ENSPFOG00000004458) ENSPFOG00000004412 ENSPFOG00000004305 mief2 (ENSPFOG00000004212) alkbh5 (ENSPFOG00000004159) ENSPFOG00000023726 col5a3b (ENSPFOG00000002675) OLFM2 (ENSPFOG00000002534) TRIP10 (ENSPFOG00000002354) Sailfin molly MODERN SPECIES 282 mief2 (ENSPLAG00000010776) alkbh5 (ENSPLAG00000010799) ENSPLAG00000010831 ENSPLAG00000010837 OLFM2 (ENSPLAG00000010856) TRIP10 (ENSPLAG00000010859) ENSPLAG00000010910 VAV1 (ENSPLAG00000010979) UBL5 (ENSPLAG00000011003) pin1 (ENSPLAG00000011019) ENSPLAG00000011027 ENSPLAG00000000243 ##22 fbxl18 (ENSPLAG00000011044) PTCD1 (ENSPLAG00000011051) ENSPLAG00000011162 Guppy MODERN SPECIES 439 ttyh3b (ENSPREG00000000076) ENSPREG00000000075 ENSPREG00000000074 ##21 PLK1 (ENSPREG00000000073) rdh8b (ENSPREG00000000072) ENSPREG00000000071 ENSPREG00000000070 ENSPREG00000000069 olfm2b (ENSPREG00000000068) TRIP10 (ENSPREG00000000067) ENSPREG00000000066 VAV1 (ENSPREG00000000065) UBL5 (ENSPREG00000000064) pin1 (ENSPREG00000000063) ENSPREG00000000062 ENSPREG00000000061 ##22 fbxl18 (ENSPREG00000000060) PTCD1 (ENSPREG00000000059) ENSPREG00000000058 ENSPREG00000000057 mief2 (ENSPREG00000000056) alkbh5 (ENSPREG00000000055) ENSPREG00000000054 ENSPREG00000000053 hapstr1b (ENSPREG00000000052) abcg2c (ENSPREG00000000051) arpc1a (ENSPREG00000000050) arpc1b (ENSPREG00000000049) MMD2 (ENSPREG00000000048) radil (ENSPREG00000000047) foxk1 (ENSPREG00000000046) Platyfish MODERN SPECIES 19 ENSXMAG00000012858 ENSXMAG00000012851 ##21 PLK1 (ENSXMAG00000012832) ENSXMAG00000012831 rdh8b (ENSXMAG00000012815) ENSXMAG00000023323 ENSXMAG00000028030 OLFM2 (ENSXMAG00000009450) TRIP10 (ENSXMAG00000026834) ENSXMAG00000028155 ENSXMAG00000015604 VAV1 (ENSXMAG00000015563) UBL5 (ENSXMAG00000027727) pin1 (ENSXMAG00000015557) ENSXMAG00000024310 ENSXMAG00000015551 ##22 fbxl18 (ENSXMAG00000015544) PTCD1 (ENSXMAG00000015540) ENSXMAG00000015530 ENSXMAG00000022863 mief2 (ENSXMAG00000015519) alkbh5 (ENSXMAG00000015514) MYO15A (ENSXMAG00000015490) ENSXMAG00000000907 hapstr1b (ENSXMAG00000003416) abcg2b (ENSXMAG00000003423) ENSXMAG00000021146 arpc1a (ENSXMAG00000003448) arpc1b (ENSXMAG00000003471) MMD2 (ENSXMAG00000003490) radil (ENSXMAG00000003492) NAME_4 ANCESTRAL SPECIES 176 ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00390000010052.b ENSGT00400000022459 ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000162658.b ENSGT00940000173775 ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a Sheepshead minnow MODERN SPECIES 739 ENSCVAG00000016587 ENSCVAG00000016571 dmrt2a (ENSCVAG00000016506) dmrt3a (ENSCVAG00000016490) dmrt1 (ENSCVAG00000016485) ENSCVAG00000016463 ENSCVAG00000016441 fbp1a (ENSCVAG00000016383) fbp2 (ENSCVAG00000016361) ENSCVAG00000016343 ENSCVAG00000015915 ENSCVAG00000015892 ENSCVAG00000015870 ENSCVAG00000015858 ##22 fbxl18 (ENSCVAG00000015834) PTCD1 (ENSCVAG00000015826) ENSCVAG00000015819 Mummichog MODERN SPECIES 2496 TRIP10 (ENSFHEG00000012284) ENSFHEG00000012299 VAV1 (ENSFHEG00000012393) UBL5 (ENSFHEG00000012408) pin1 (ENSFHEG00000012428) ENSFHEG00000012440 ENSFHEG00000012447 ENSFHEG00000012458 ENSFHEG00000012469 ##22 fbxl18 (ENSFHEG00000012475) PTCD1 (ENSFHEG00000012491) ENSFHEG00000012501 ENSFHEG00000012508 mief2 (ENSFHEG00000012519) ENSFHEG00000012525 ENSFHEG00000012696 ENSFHEG00000012781 hapstr1b (ENSFHEG00000012815) abcg2c (ENSFHEG00000012869) ENSFHEG00000012881 ENSFHEG00000012893 arpc1a (ENSFHEG00000000760) arpc1b (ENSFHEG00000000290) MMD2 (ENSFHEG00000012996) Percomorphaceae_C ANCESTRAL SPECIES 3 ENSGT00950000183249 ENSGT00940000162394 ENSGT00940000159148.b ENSGT01060000248589.A.d ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00990000204057 ENSGT00530000063725.p.f ENSGT00530000063725.p.e.a ENSGT00530000063725.p.e.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000182552 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a Percomorphaceae_D ANCESTRAL SPECIES ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00950000183249 ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f ENSGT00530000063725.p.e.a ENSGT00530000063725.p.e.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000182552 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a Carangaria ANCESTRAL SPECIES ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00950000183249 ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f ENSGT00530000063725.p.e.a ENSGT00530000063725.p.e.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000182552 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a Pleuronectoidei ANCESTRAL SPECIES 26 ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00950000183249 ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.e.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.a ##22 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000167865 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a Tongue sole MODERN SPECIES 19 papss1 (ENSCSEG00000002644) sgms2a (ENSCSEG00000002639) ccdc86 (ENSCSEG00000002637) glb1 (ENSCSEG00000002616) acy3.2 (ENSCSEG00000002608) cldnd1b (ENSCSEG00000002603) tacr3l (ENSCSEG00000002593) ENSCSEG00000002589 olfm2b (ENSCSEG00000002585) MFAP4 (ENSCSEG00000002584) TRIP10 (ENSCSEG00000002571) ENSCSEG00000002449 VAV1 (ENSCSEG00000002409) UBL5 (ENSCSEG00000002401) pin1 (ENSCSEG00000002396) ENSCSEG00000002389 ##22 fbxl18 (ENSCSEG00000002382) PTCD1 (ENSCSEG00000002378) zgc:112980 (ENSCSEG00000002362) smcr8b (ENSCSEG00000002336) mief2 (ENSCSEG00000002331) alkbh5 (ENSCSEG00000002327) ENSCSEG00000002317 ENSCSEG00000002307 ENSCSEG00000002302 ENSCSEG00000002295 hapstr1b (ENSCSEG00000002290) abcg2c (ENSCSEG00000002283) ENSCSEG00000002280 ENSCSEG00000002276 arpc1a (ENSCSEG00000002272) Carangaria_A ANCESTRAL SPECIES 14 ENSGT00940000157752 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00950000183249 ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f ENSGT00530000063725.p.e.a ENSGT00530000063725.p.e.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000182552 ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a Barramundi perch MODERN SPECIES 399 ENSLCAG00010007565 UBL5 (ENSLCAG00010007558) pin1 (ENSLCAG00010007549) ENSLCAG00010007539 ENSLCAG00010007529 ENSLCAG00010007517 ENSLCAG00010007316 ##22 fbxl18 (ENSLCAG00010007244) PTCD1 (ENSLCAG00010007233) zgc:112980 (ENSLCAG00010007222) smcr8b (ENSLCAG00010007212) mief2 (ENSLCAG00010007204) alkbh5 (ENSLCAG00010007194) ENSLCAG00010007181 ENSLCAG00010007173 ENSLCAG00010007104 hapstr1b (ENSLCAG00010007072) abcg2c (ENSLCAG00010007066) ENSLCAG00010007061 ENSLCAG00010007057 arpc1b (ENSLCAG00010007010) MMD2 (ENSLCAG00010006990) Seriola ANCESTRAL SPECIES 18 ENSGT00940000157752 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00950000183249 ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f ENSGT00530000063725.p.e.a ENSGT00530000063725.p.e.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000182552 ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a Greater amberjack MODERN SPECIES 13 PLK1 (ENSSDUG00000015035) rdh8b (ENSSDUG00000015069) ENSSDUG00000015087 ENSSDUG00000015109 OLFM2 (ENSSDUG00000015114) MFAP4 (ENSSDUG00000015158) TRIP10 (ENSSDUG00000015174) ENSSDUG00000015235 VAV1 (ENSSDUG00000015274) UBL5 (ENSSDUG00000015336) pin1 (ENSSDUG00000015348) ENSSDUG00000015363 ENSSDUG00000015430 ENSSDUG00000015586 ENSSDUG00000015606 ENSSDUG00000015634 ##22 fbxl18 (ENSSDUG00000015649) PTCD1 (ENSSDUG00000015671) smcr8b (ENSSDUG00000015863) mief2 (ENSSDUG00000015872) alkbh5 (ENSSDUG00000015880) ENSSDUG00000015899 ENSSDUG00000015946 ENSSDUG00000015968 abcg2b (ENSSDUG00000016042) hapstr1b (ENSSDUG00000016096) ENSSDUG00000016114 ENSSDUG00000016122 ENSSDUG00000016146 arpc1a (ENSSDUG00000016164) arpc1b (ENSSDUG00000016183) Yellowtail amberjack MODERN SPECIES 3195 PLK1 (ENSSLDG00000016237) rdh8b (ENSSLDG00000016188) ENSSLDG00000016153 ENSSLDG00000016143 OLFM2 (ENSSLDG00000016097) MFAP4 (ENSSLDG00000016068) TRIP10 (ENSSLDG00000015981) ENSSLDG00000015879 VAV1 (ENSSLDG00000015815) UBL5 (ENSSLDG00000015781) pin1 (ENSSLDG00000015758) ENSSLDG00000015653 ENSSLDG00000014616 ENSSLDG00000014378 ENSSLDG00000014362 ENSSLDG00000014332 ##22 fbxl18 (ENSSLDG00000014309) PTCD1 (ENSSLDG00000014261) zgc:112980 (ENSSLDG00000014217) smcr8b (ENSSLDG00000014199) mgat4b (ENSSLDG00000014173) canx (ENSSLDG00000014150) MAML1 (ENSSLDG00000014125) LTC4S (ENSSLDG00000014108) emx3 (ENSSLDG00000014095) b4galt7 (ENSSLDG00000014080) ENSSLDG00000014068 ENSSLDG00000014054 ENSSLDG00000014045 Anabantaria ANCESTRAL SPECIES 1 ENSGT00950000183157.a.a.b.d ##21 ENSGT00940000163566.a.a ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.e.a ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a ENSGT00940000162658.b Anabantoidei ANCESTRAL SPECIES ENSGT00950000183157.a.a.b.d ##21 ENSGT00940000163566.a.a ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.e.a ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000162658.b ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.b Climbing perch MODERN SPECIES ENSATEG00000005392 ENSATEG00000027547 ENSATEG00000028057 ENSATEG00000005657 rdh8b (ENSATEG00000005674) ENSATEG00000005712 olfm2b (ENSATEG00000006219) ENSATEG00000029982 TRIP10 (ENSATEG00000006265) ENSATEG00000006276 VAV1 (ENSATEG00000006284) ENSATEG00000006411 ENSATEG00000006436 ENSATEG00000006475 ENSATEG00000006970 ENSATEG00000006980 ##22 fbxl18 (ENSATEG00000007008) ENSATEG00000007016 zgc:112980 (ENSATEG00000007024) smcr8b (ENSATEG00000007148) mief2 (ENSATEG00000007155) alkbh5 (ENSATEG00000007186) ENSATEG00000007193 ENSATEG00000007389 ENSATEG00000007469 abcg2b (ENSATEG00000007498) ENSATEG00000007784 ENSATEG00000028845 ENSATEG00000007824 MMD2 (ENSATEG00000007894) RADIL (ENSATEG00000007941) Siamese fighting fish MODERN SPECIES plrg1 (ENSBSLG00000000524) fgg (ENSBSLG00000000767) lrata (ENSBSLG00000000779) ENSBSLG00000000781 ENSBSLG00000000784 pdlim3a (ENSBSLG00000000787) SORBS2 (ENSBSLG00000000797) ENSBSLG00000000868 cyp4v2a (ENSBSLG00000000870) mtnr1aa (ENSBSLG00000000881) UBL5 (ENSBSLG00000000884) pin1 (ENSBSLG00000000886) ENSBSLG00000000889 ENSBSLG00000000894 ENSBSLG00000000897 actb1 (ENSBSLG00000000900) ##22 fbxl18 (ENSBSLG00000000904) PTCD1 (ENSBSLG00000000908) ENSBSLG00000000913 smcr8b (ENSBSLG00000000921) mief2 (ENSBSLG00000000928) alkbh5 (ENSBSLG00000000934) ENSBSLG00000000961 hapstr1b (ENSBSLG00000000964) abcg2c (ENSBSLG00000000975) ENSBSLG00000001006 arpc1b (ENSBSLG00000001009) MMD2 (ENSBSLG00000001012) radil (ENSBSLG00000001017) foxk1 (ENSBSLG00000001019) cyp3a65 (ENSBSLG00000001062) Zig-zag eel MODERN SPECIES ENSMAMG00000007123 ENSMAMG00000007173 ##21 ENSMAMG00000007185 ENSMAMG00000007199 ENSMAMG00000007244 ENSMAMG00000007265 ENSMAMG00000025200 ENSMAMG00000007338 ENSMAMG00000007354 TRIP10 (ENSMAMG00000007362) ENSMAMG00000007383 VAV1 (ENSMAMG00000007429) ENSMAMG00000007541 ENSMAMG00000007551 ENSMAMG00000007568 ENSMAMG00000007586 ##22 fbxl18 (ENSMAMG00000007615) ENSMAMG00000007623 zgc:112980 (ENSMAMG00000007639) smcr8b (ENSMAMG00000007656) mief2 (ENSMAMG00000007672) alkbh5 (ENSMAMG00000007695) ENSMAMG00000025724 ENSMAMG00000007991 ENSMAMG00000008048 abcg2b (ENSMAMG00000008060) ENSMAMG00000024569 ENSMAMG00000008121 ENSMAMG00000008158 MMD2 (ENSMAMG00000008225) RADIL (ENSMAMG00000008255) Eupercaria ANCESTRAL SPECIES 2 ENSGT00950000183249 ENSGT00940000162394 ENSGT00940000159148.b ENSGT01060000248589.A.d ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00990000204057 ENSGT00530000063725.p.f ENSGT00530000063725.p.e.a ENSGT00530000063725.p.e.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000162658.b ENSGT00390000002164.b ENSGT00940000177139 ENSGT00950000183183.b.a ENSGT00950000183183.b.b Tetraodontidae ANCESTRAL SPECIES 16 ENSGT00950000183060.a.a.d.a ENSGT00940000163679 ENSGT00950000183157.a.a.b.d ##21 ENSGT00970000196908 ENSGT00940000167399 ENSGT00940000154535.B ENSGT00940000159148.b ENSGT00940000163551.j ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.e.a ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00940000155335.s.a ENSGT00940000156222.a.b.l ENSGT00390000002886.a.a.a ENSGT00940000162658.b ENSGT00390000002164.b ENSGT00940000177139 ENSGT00950000183183.b.a ENSGT00940000159293.j ENSGT00940000159507 Tetraodon MODERN SPECIES 10 ENSTNIG00000000470 ENSTNIG00000008256 ttyh3b (ENSTNIG00000008257) ENSTNIG00000008258 ENSTNIG00000008259 ##21 plk1 (ENSTNIG00000008260) ENSTNIG00000008261 col5a3b (ENSTNIG00000008262) OLFM2 (ENSTNIG00000008263) TRIP10 (ENSTNIG00000008264) ENSTNIG00000008265 ENSTNIG00000000930 VAV1 (ENSTNIG00000008266) UBL5 (ENSTNIG00000008267) ENSTNIG00000008268 ENSTNIG00000008269 ##22 fbxl18 (ENSTNIG00000008270) PTCD1 (ENSTNIG00000008271) zgc:112980 (ENSTNIG00000008272) smcr8b (ENSTNIG00000008273) mief2 (ENSTNIG00000008274) alkbh5 (ENSTNIG00000008275) MYO15A (ENSTNIG00000008276) ENSTNIG00000008277 hapstr1b (ENSTNIG00000008278) GNA12 (ENSTNIG00000008279) ENSTNIG00000002138 ENSTNIG00000004649 EIF3B (ENSTNIG00000004648) brat1 (ENSTNIG00000004647) grapb (ENSTNIG00000004646) Eupecaria_A ANCESTRAL SPECIES 3 ENSGT00950000183249 ENSGT00940000162394 ENSGT00940000159148.b ENSGT01060000248589.A.d ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00990000204057 ENSGT00530000063725.p.f ENSGT00530000063725.p.e.a ENSGT00530000063725.p.e.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000162658.b ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a ENSGT00950000183183.b.b Ballan wrasse MODERN SPECIES 7 ttyh3b (ENSLBEG00000008948) ENSLBEG00000008862 ENSLBEG00000008798 ##21 rasd3 (ENSLBEG00000008774) PLK1 (ENSLBEG00000008688) rdh8b (ENSLBEG00000008647) ENSLBEG00000008602 ENSLBEG00000008578 OLFM2 (ENSLBEG00000008531) TRIP10 (ENSLBEG00000008481) ENSLBEG00000008404 VAV1 (ENSLBEG00000008306) UBL5 (ENSLBEG00000008261) pin1 (ENSLBEG00000008241) ENSLBEG00000008204 ENSLBEG00000008186 ##22 fbxl18 (ENSLBEG00000008104) PTCD1 (ENSLBEG00000008061) zgc:112980 (ENSLBEG00000007976) smcr8b (ENSLBEG00000007934) mief2 (ENSLBEG00000007914) alkbh5 (ENSLBEG00000007886) ENSLBEG00000007860 ENSLBEG00000007832 Eupecaria_B ANCESTRAL SPECIES 1 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000159148.b ENSGT01060000248589.A.d ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00990000204057 ENSGT00530000063725.p.f ENSGT00530000063725.p.e.a ENSGT00530000063725.p.e.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000162658.b ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a ENSGT00950000183183.b.b Perciformes ANCESTRAL SPECIES 2 ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT01100000263598 ENSGT00950000182960.a.a.a.a ##22 ENSGT00990000204057 ENSGT00530000063725.p.f ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000162658.b ENSGT00940000173775 ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a Perciformes_a ANCESTRAL SPECIES ENSGT00950000183157.a.a.b.d ##21 ENSGT00940000163566.a.a ENSGT00940000157752 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00990000204057 ENSGT00530000063725.p.f ENSGT00950000182960.a.a.b.e.b ##22 ENSGT01100000263598 ENSGT00950000182960.a.a.a.a ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.b Pike perch MODERN SPECIES 8 ENSSLUG00000001019 ENSSLUG00000001024 ##21 rasd3 (ENSSLUG00000001029) PLK1 (ENSSLUG00000001032) rdh8b (ENSSLUG00000001043) col5a3b (ENSSLUG00000001076) olfm2b (ENSSLUG00000001121) ENSSLUG00000001126 ENSSLUG00000001129 TRIP10 (ENSSLUG00000001155) ENSSLUG00000001190 VAV1 (ENSSLUG00000001236) UBL5 (ENSSLUG00000001317) pin1 (ENSSLUG00000001321) ENSSLUG00000001326 ENSSLUG00000001329 ##22 fbxl18 (ENSSLUG00000001338) PTCD1 (ENSSLUG00000001340) zgc:112980 (ENSSLUG00000001343) smcr8b (ENSSLUG00000001345) mief2 (ENSSLUG00000001349) alkbh5 (ENSSLUG00000001351) ENSSLUG00000001354 ENSSLUG00000001376 hapstr1b (ENSSLUG00000001410) abcg2c (ENSSLUG00000001414) ENSSLUG00000001417 ENSSLUG00000001418 arpc1b (ENSSLUG00000001422) MMD2 (ENSSLUG00000001470) foxk1 (ENSSLUG00000005007) Cottioidei ANCESTRAL SPECIES 3 ENSGT00950000183060.a.a.d.a ENSGT00940000163679 ENSGT00950000183157.a.a.b.d ##21 ENSGT00940000163566.a.a ENSGT00940000157752 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000162658.b ENSGT00390000002164.b ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.a ENSGT00950000183183.b.b Stickleback MODERN SPECIES 4 ENSGACG00000016506 ttyh3b (ENSGACG00000016508) ENSGACG00000016515 FSCN1 (ENSGACG00000016520) ##21 PLK1 (ENSGACG00000016526) rdh8b (ENSGACG00000016530) col5a3b (ENSGACG00000016535) olfm2b (ENSGACG00000016561) ENSGACG00000016562 TRIP10 (ENSGACG00000016566) ENSGACG00000016568 VAV1 (ENSGACG00000016580) UBL5 (ENSGACG00000016584) pin1 (ENSGACG00000016585) ENSGACG00000016589 ENSGACG00000016593 ##22 fbxl18 (ENSGACG00000016604) ENSGACG00000016606 PTCD1 (ENSGACG00000016607) zgc:112980 (ENSGACG00000016610) smcr8b (ENSGACG00000016613) mief2 (ENSGACG00000016616) alkbh5 (ENSGACG00000016621) MYO15A (ENSGACG00000016622) ENSGACG00000016632 hapstr1b (ENSGACG00000016635) abcg2b (ENSGACG00000016636) arpc1a (ENSGACG00000016638) arpc1b (ENSGACG00000016657) MMD2 (ENSGACG00000016661) radil (ENSGACG00000016663) Lumpfish MODERN SPECIES PLK1 (ENSCLMG00005000304) rdh8b (ENSCLMG00005000318) col5a3b (ENSCLMG00005000330) olfm2b (ENSCLMG00005000376) ENSCLMG00005000495 TRIP10 (ENSCLMG00005000607) ENSCLMG00005000624 VAV1 (ENSCLMG00005000653) UBL5 (ENSCLMG00005000687) pin1 (ENSCLMG00005000688) ENSCLMG00005000691 ENSCLMG00005000710 ENSCLMG00005000731 ENSCLMG00005000732 ENSCLMG00005000733 ENSCLMG00005000735 ##22 fbxl18 (ENSCLMG00005000737) PTCD1 (ENSCLMG00005000738) zgc:112980 (ENSCLMG00005000739) smcr8b (ENSCLMG00005000742) mief2 (ENSCLMG00005000744) alkbh5 (ENSCLMG00005000745) ENSCLMG00005000746 ENSCLMG00005000750 hapstr1b (ENSCLMG00005000752) abcg2b (ENSCLMG00005000753) ENSCLMG00005000755 ENSCLMG00005000756 arpc1a (ENSCLMG00005000757) arpc1b (ENSCLMG00005000761) MMD2 (ENSCLMG00005000764) Eupecaria_C ANCESTRAL SPECIES 14 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000162394 ENSGT00940000159148.b ENSGT01060000248589.A.d ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f ENSGT00530000063725.p.e.a ENSGT00530000063725.p.e.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.b ENSGT00940000157972.d ENSGT00940000159293 ENSGT00940000159507 Gilthead seabream MODERN SPECIES rdh8b (ENSSAUG00010002383) ENSSAUG00010002439 ENSSAUG00010003674 OLFM2 (ENSSAUG00010003679) ENSSAUG00010003690 MFAP4 (ENSSAUG00010003700) TRIP10 (ENSSAUG00010003713) ENSSAUG00010003744 VAV1 (ENSSAUG00010003790) UBL5 (ENSSAUG00010005077) pin1 (ENSSAUG00010005079) ENSSAUG00010005083 ENSSAUG00010005085 ENSSAUG00010005086 ENSSAUG00010005089 ENSSAUG00010005095 ##22 fbxl18 (ENSSAUG00010005101) PTCD1 (ENSSAUG00010005102) smcr8b (ENSSAUG00010005103) mief2 (ENSSAUG00010005104) alkbh5 (ENSSAUG00010002796) MYO15A (ENSSAUG00010002828) ENSSAUG00010002933 ENSSAUG00010002979 cyp3a65 (ENSSAUG00010003022) hapstr1b (ENSSAUG00010003278) abcg2c (ENSSAUG00010003305) ENSSAUG00010003975 arpc1b (ENSSAUG00010003984) MMD2 (ENSSAUG00010004018) radil (ENSSAUG00010004022) Eupercaria_incertae_sedis ANCESTRAL SPECIES 13 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00940000159148.b ENSGT01060000248589.A.d ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00530000063725.p.f ENSGT00530000063725.p.e.a ENSGT00530000063725.p.e.b ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000162658.b ENSGT00940000177139 ENSGT00940000155366.b.b.d.a ENSGT00950000183183.b.b ENSGT00940000157972.d ENSGT00940000159293 European seabass MODERN SPECIES 20 ENSDLAG00005020790 olfm2b (ENSDLAG00005020774) ENSDLAG00005027198 ENSDLAG00005028231 ENSDLAG00005003231 TRIP10 (ENSDLAG00005019668) ENSDLAG00005019634 VAV1 (ENSDLAG00005018480) ENSDLAG00005018446 ENSDLAG00005018433 ENSDLAG00005017457 ENSDLAG00005018416 ENSDLAG00005005172 ENSDLAG00005005392 ENSDLAG00005018387 ENSDLAG00005018358 ##22 ENSDLAG00005018351 zgc:112980 (ENSDLAG00005018308) smcr8b (ENSDLAG00005018266) mief2 (ENSDLAG00005018251) alkbh5 (ENSDLAG00005018238) ENSDLAG00005032865 ENSDLAG00005017302 ENSDLAG00005033020 abcg2b (ENSDLAG00005017097) ENSDLAG00005017086 ENSDLAG00005016847 MMD2 (ENSDLAG00005032987) RADIL (ENSDLAG00005016712) FOXK1 (ENSDLAG00005016699) ENSDLAG00005015585 Large yellow croaker MODERN SPECIES 481 ENSLCRG00005003092 ##21 rasd3 (ENSLCRG00005003095) PLK1 (ENSLCRG00005003102) ENSLCRG00005003259 rdh8b (ENSLCRG00005003263) col5a3b (ENSLCRG00005003303) olfm2b (ENSLCRG00005003938) ENSLCRG00005003941 MFAP4 (ENSLCRG00005003942) TRIP10 (ENSLCRG00005003947) ENSLCRG00005003950 VAV1 (ENSLCRG00005003958) UBL5 (ENSLCRG00005004620) pin1 (ENSLCRG00005002404) ENSLCRG00005002419 ENSLCRG00005002431 ##22 fbxl18 (ENSLCRG00005002447) PTCD1 (ENSLCRG00005002470) zgc:112980 (ENSLCRG00005002485) smcr8b (ENSLCRG00005002493) mief2 (ENSLCRG00005002499) alkbh5 (ENSLCRG00005002503) ENSLCRG00005002595 hapstr1b (ENSLCRG00005002980) abcg2b (ENSLCRG00005003006) ENSLCRG00005004023 arpc1b (ENSLCRG00005004024) MMD2 (ENSLCRG00005004033) radil (ENSLCRG00005004034) foxk1 (ENSLCRG00005004041) cyp3a65 (ENSLCRG00005004071) Euteleosteomorpha ANCESTRAL SPECIES 426 ENSGT00940000157752 ENSGT00940000163566.a.a ENSGT00950000183157.a.a.b.d ##21 ENSGT00950000182960.a.a.b.f ##22 Protacanthopterygii ANCESTRAL SPECIES 117 ENSGT00550000074913 ENSGT00390000017551 ENSGT00940000157636 ENSGT00940000157747.c.b ENSGT00940000156254.o.a ENSGT00940000157932.m.b ENSGT00940000159416 ENSGT00950000182803.A.a.a.c.b ENSGT00550000075029 ENSGT00530000064157.a ENSGT00940000158025.a.b ENSGT00940000166046 ENSGT00940000157752 ENSGT00940000163566.a.a ENSGT00950000183157.a.a.b.d ##21 ENSGT00950000182960.a.a.b.f ##22 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000167865 ENSGT00950000182935.B.b.d.b Salmoninae ANCESTRAL SPECIES 403 ENSGT00940000160198 ENSGT00940000160060.g ENSGT00980000202286 ENSGT00940000165626 ENSGT00940000155366.b.b.c ENSGT00940000156254.o.a ENSGT00940000157932.m.b ENSGT00940000159416 ENSGT00550000075029.b ENSGT00550000075029.a.a ENSGT00530000064157.a ENSGT00940000158025.a.b ENSGT00940000166046 ENSGT00940000157752 ENSGT00950000183157.a.a.b.d ##21 ENSGT00950000182960.a.a.b.f ##22 ENSGT00390000015109 ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000167865 ENSGT00950000182935.B.b.d.b ENSGT00940000156666.n ENSGT00940000165262.f Huchen MODERN SPECIES 264 hspa8 (ENSHHUG00000051072) ENSHHUG00000051060 ENSHHUG00000051054 HSPA8 (ENSHHUG00000051052) zpr1 (ENSHHUG00000051004) h2ax1 (ENSHHUG00000050985) hyou1 (ENSHHUG00000050786) vps11 (ENSHHUG00000050754) ift46 (ENSHHUG00000050741) BBX (ENSHHUG00000050727) B3GAT1 (ENSHHUG00000050725) ENSHHUG00000050724 micu2 (ENSHHUG00000050712) IRF2BP1 (ENSHHUG00000050711) hnrnpl (ENSHHUG00000050668) actb1 (ENSHHUG00000050662) ##22 ENSHHUG00000050652 ENSHHUG00000050650 ckma (ENSHHUG00000050536) ENSHHUG00000050535 ENSHHUG00000050534 ENSHHUG00000050533 ENSHHUG00000050532 ENSHHUG00000050531 EXOC3L2 (ENSHHUG00000050530) ppp1r14aa (ENSHHUG00000050529) dlb (ENSHHUG00000050527) Salmoninae_a DUPLICATION Salmoninae_a DUPLICATION Salmoninae_a ANCESTRAL SPECIES 143 ENSGT00940000160060.g ENSGT00980000202286 ENSGT00940000165626.m ENSGT00940000155366.b.b.c ENSGT00940000156254.o.a ENSGT00940000157932.m.b ENSGT00940000159416 ENSGT00550000075029.b ENSGT00550000075029.a.a ENSGT00530000064157.a ENSGT00940000158025.a.b ENSGT00940000166046.g ENSGT00940000157752 ENSGT00950000183157.a.a.b.d ##21 ENSGT00950000182960.a.a.b.f.a.b ##22 ENSGT00950000182960.a.a.b.f.a.a ##22 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000167865.d ENSGT00950000182935.B.b.d.b ENSGT00940000156666.n ENSGT00940000165262.f Oncorhynchus ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.f.a.a ##22 Rainbow trout MODERN SPECIES 88 ENSOMYG00000028281 ##22 ENSOMYG00000075712 ENSOMYG00000063130 Salmo ANCESTRAL SPECIES 227 ENSGT00950000183157.a.a.b.d ##21 ENSGT00950000182960.a.a.b.f.a.b ##22 ENSGT00950000182960.a.a.b.f.a.a ##22 ENSGT00390000015109 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298.j ENSGT00930000151032.A.c.a ENSGT00940000167865.d ENSGT00950000182935.B.b.d.b ENSGT00940000156666.n ENSGT00940000165262.f Atlantic salmon MODERN SPECIES 11 ENSSSAG00000113834 ENSSSAG00000105615 rgs11 (ENSSSAG00000103589) pgap6 (ENSSSAG00000096905) ENSSSAG00000009935 pdia2 (ENSSSAG00000062621) ENSSSAG00000001993 grapb (ENSSSAG00000094956) ENSSSAG00000112889 SLC5A10 (ENSSSAG00000083395) ENSSSAG00000107671 ENSSSAG00000102836 ENSSSAG00000113746 plk1 (ENSSSAG00000043943) ENSSSAG00000093180 ##21 ENSSSAG00000112349 ##22 fbxl18 (ENSSSAG00000001070) smcr8b (ENSSSAG00000003605) ENSSSAG00000090669 alkbh5 (ENSSSAG00000003588) ENSSSAG00000119470 ENSSSAG00000000333 syngr3b (ENSSSAG00000116887) ENSSSAG00000085862 ENSSSAG00000094254 ENSSSAG00000084391 ENSSSAG00000118667 ENSSSAG00000108691 ENSSSAG00000036324 ENSSSAG00000119555 ENSSSAG00000089834 Salmoninae_a ANCESTRAL SPECIES 143 ENSGT00940000160198.m.a.b ENSGT00940000160060.g ENSGT00980000202286 ENSGT00940000165626.m ENSGT00940000155366.b.b.c ENSGT00940000156254.o.a ENSGT00940000157932.m.b ENSGT00940000159416 ENSGT00550000075029.b ENSGT00550000075029.a.a ENSGT00530000064157.a ENSGT00940000158025.a.b ENSGT00940000166046.g ENSGT00940000157752 ENSGT00950000183157.a.a.b.d ##21 ENSGT00950000182960.a.a.b.f.a.b ##22 ENSGT00950000182960.a.a.b.f.a.a ##22 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000167865.d ENSGT00950000182935.B.b.d.b ENSGT00940000156666.n ENSGT00940000165262.f Oncorhynchus ANCESTRAL SPECIES 123 ENSGT00550000075029.a.a ENSGT00530000064157.a ENSGT00940000158025.a.b ENSGT00940000166046.g ENSGT00940000157752.p ENSGT00950000183157.a.a.b.d ##21 ENSGT00950000182960.a.a.b.f.a.b ##22 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT01050000244843.d.e.a.b.b ENSGT00940000163711.b.c.a.b.a.a ENSGT00930000151032.A.c.a.a ENSGT00950000182935.B.b.d.b.g ENSGT00940000156666.n.a Rainbow trout MODERN SPECIES 212 ENSOMYG00000053231 ENSOMYG00000064627 chtf18 (ENSOMYG00000067179) gng13a (ENSOMYG00000049816) ENSOMYG00000072731 zgc:136472 (ENSOMYG00000051141) ENSOMYG00000057796 ENSOMYG00000059701 ##21 ENSOMYG00000068324 ##22 ENSOMYG00000051947 ENSOMYG00000064956 ENSOMYG00000054845 ENSOMYG00000068627 smcr8b (ENSOMYG00000050888) mief2 (ENSOMYG00000077506) alkbh5 (ENSOMYG00000071393) ENSOMYG00000060223 ENSOMYG00000065400 ENSOMYG00000062188 syngr3b (ENSOMYG00000073124) ENSOMYG00000065888 ENSOMYG00000067128 Salmo ANCESTRAL SPECIES 227 ENSGT00950000183157.a.a.b.d ##21 ENSGT00950000182960.a.a.b.f.a.b ##22 ENSGT00950000182960.a.a.b.f.a.a ##22 ENSGT00390000015109 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298.j ENSGT00930000151032.A.c.a ENSGT00940000167865.d ENSGT00950000182935.B.b.d.b ENSGT00940000156666.n ENSGT00940000165262.f Atlantic salmon MODERN SPECIES 3 ENSSSAG00000109214 ENSSSAG00000091708 ENSSSAG00000026150 ENSSSAG00000097088 ENSSSAG00000095941 FAM83G (ENSSSAG00000116348) ENSSSAG00000081736 ENSSSAG00000121559 ENSSSAG00000112112 ENSSSAG00000096131 ENSSSAG00000057592 ##21 ENSSSAG00000111819 ##22 smcr8b (ENSSSAG00000082252) alkbh5 (ENSSSAG00000112631) ENSSSAG00000109605 ENSSSAG00000108355 ENSSSAG00000007813 ENSSSAG00000117032 syngr3b (ENSSSAG00000115051) ENSSSAG00000120171 ENSSSAG00000062712 ENSSSAG00000093290 ENSSSAG00000097309 ENSSSAG00000116764 ENSSSAG00000060528 ENSSSAG00000096819 ENSSSAG00000108181 Salmoninae_a ANCESTRAL SPECIES 115 ENSGT00940000165827 ENSGT00940000156666.m.a ENSGT00940000160079 ENSGT00940000157239.h.a.a ENSGT00940000156254.o.b ENSGT00940000157932.m.a ENSGT00950000182803.A.a.a.c.a.a.a ENSGT00940000158025.a.a.b.i ENSGT00940000157022 ENSGT00530000064157.b ENSGT01060000248954 ENSGT00510000048339 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.b.f.b ##22 ENSGT00940000157099.o ENSGT00950000182898.a.b ENSGT00940000165557.l ENSGT00940000155520.yb ENSGT00940000165557.m.a ENSGT00940000155520.xb.a ENSGT00390000014300 ENSGT00390000002762.a.b ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000156643.e ENSGT00950000182906.a.a.a ENSGT00930000151032.A.c.b ENSGT00940000167865.c ENSGT00940000155335.s.b Oncorhynchus ANCESTRAL SPECIES 82 ENSGT00940000165827 ENSGT00940000156666.m.a ENSGT00940000160079 ENSGT00940000157239.h.a.a ENSGT00940000156254.o.b ENSGT00940000157932.m.a ENSGT00950000182803.A.a.a.c.a.a.a ENSGT00940000158025.a.a.b.i ENSGT00940000157022 ENSGT00530000064157.b.j ENSGT01060000248954.e.a ENSGT00510000048339 ENSGT00510000048032 ENSGT00950000183157.a.a.b.c ##21 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.b.f.b ##22 ENSGT00940000157099.o ENSGT00950000182898.a.b ENSGT00940000165557.m.a ENSGT00940000155520.xb.a ENSGT00390000014300.k ENSGT00390000002762.a.b.f.a ENSGT00390000014300.l ENSGT00390000002762.a.b.f.b ENSGT00390000010052.a ENSGT00940000156701 ENSGT00940000156643.e.d ENSGT00940000156643.e.c ENSGT00950000182906.a.a.a ENSGT00930000151032.A.c.b ENSGT00940000167865.c Rainbow trout MODERN SPECIES 170 b9d1 (ENSOMYG00000065815) EPN2 (ENSOMYG00000065303) grapa (ENSOMYG00000077775) ENSOMYG00000051112 prpsap2 (ENSOMYG00000077678) ENSOMYG00000071893 ENSOMYG00000061046 traf7 (ENSOMYG00000069707) gng13b (ENSOMYG00000058495) ENSOMYG00000056903 ENSOMYG00000073626 ENSOMYG00000062122 ##21 actb2 (ENSOMYG00000050803) ##22 ENSOMYG00000068294 slc29a4a (ENSOMYG00000066802) ATPK (ENSOMYG00000025218) cpsf4 (ENSOMYG00000064519) ENSOMYG00000069021 ENSOMYG00000038873 shmt1 (ENSOMYG00000075047) smcr8a (ENSOMYG00000071508) TOP3A (ENSOMYG00000055851) flii (ENSOMYG00000070014) LLGL1 (ENSOMYG00000071356) ENSOMYG00000071922 ENSOMYG00000055858 ENSOMYG00000052057 ENSOMYG00000056016 Oncorhynchus_a ANCESTRAL SPECIES 188 ENSGT00940000158025.a.b ENSGT00940000166046.g ENSGT00940000157752.p ENSGT00950000183157.a.a.b.d ##21 ENSGT00950000182960.a.a.b.f.b ##22 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00390000015109 ENSGT00930000151032.A.c.a.a ENSGT00940000163711.b.c.a.b.a.a ENSGT01050000244843.d.e.a.b.b ENSGT00390000009298 ENSGT00390000013127.b ENSGT00390000010052.b Coho salmon DUPLICATION Coho salmon DUPLICATION Coho salmon MODERN SPECIES 1283 ENSOKIG00005041451 ##21 ENSOKIG00005041415 ENSOKIG00005041311 ##22 slc29a4a (ENSOKIG00005041213) atp5mf (ENSOKIG00005041186) ENSOKIG00005041077 bud31 (ENSOKIG00005043677) shmt1 (ENSOKIG00005043180) Coho salmon MODERN SPECIES 35 ENSOKIG00005043907 ENSOKIG00005043936 ENSOKIG00005043955 ENSOKIG00005043961 grapa (ENSOKIG00005043972) ENSOKIG00005044022 ENSOKIG00005044038 CASKIN1 (ENSOKIG00005044252) traf7 (ENSOKIG00005044318) gng13b (ENSOKIG00005044353) ENSOKIG00005044357 RPUSD1 (ENSOKIG00005044369) ENSOKIG00005044380 ENSOKIG00005044387 ENSOKIG00005044407 ##21 ENSOKIG00005044421 ##22 ENSOKIG00005044458 slc29a4a (ENSOKIG00005044475) atp5mf (ENSOKIG00005044518) cpsf4 (ENSOKIG00005044551) BUD31 (ENSOKIG00005044579) shmt1 (ENSOKIG00005044627) smcr8a (ENSOKIG00005044964) TOP3A (ENSOKIG00005045081) flii (ENSOKIG00005045845) LLGL1 (ENSOKIG00005021300) ENSOKIG00005021774 drg2 (ENSOKIG00005021799) ENSOKIG00005021942 gfer (ENSOKIG00005021946) syngr3a (ENSOKIG00005021954) Coho salmon DUPLICATION Coho salmon MODERN SPECIES 1477 PLK1 (ENSOKIG00005026236) FSCN1 (ENSOKIG00005026276) ##21 ENSOKIG00005026310 ##22 fbxl18 (ENSOKIG00005026334) ENSOKIG00005026344 ENSOKIG00005026353 Coho salmon MODERN SPECIES 30 ENSOKIG00005031785 DCTN6 (ENSOKIG00005031650) ENSOKIG00005030097 ENSOKIG00005029966 ENSOKIG00005029949 zgc:136472 (ENSOKIG00005029939) ENSOKIG00005029929 PLK1 (ENSOKIG00005029808) FSCN1 (ENSOKIG00005029773) ##21 ENSOKIG00005029764 ENSOKIG00005029726 ##22 FBXL18 (ENSOKIG00005029708) ENSOKIG00005029699 ENSOKIG00005029646 ENSOKIG00005029612 ENSOKIG00005029602 ENSOKIG00005029581 alkbh5 (ENSOKIG00005029567) ENSOKIG00005029552 smcr8b (ENSOKIG00005029534) ENSOKIG00005029480 ENSOKIG00005029463 ENSOKIG00005028508 ENSOKIG00005028017 foxk1 (ENSOKIG00005027972) MMD2 (ENSOKIG00005027861) Salmo ANCESTRAL SPECIES 424 ENSGT00950000182960.a.a.b.f.b ##22 ENSGT00940000157099.p ENSGT00950000182898.a.b Atlantic salmon MODERN SPECIES 809 actb2 (ENSSSAG00000100279) ##22 ENSSSAG00000106018 slc29a4a (ENSSSAG00000100190) ENSSSAG00000093038 River trout MODERN SPECIES 498 LLGL1 (ENSSTUG00000048510) drg2 (ENSSTUG00000049064) gfer (ENSSTUG00000049110) ENSSTUG00000049114 znf598 (ENSSTUG00000049117) ENSSTUG00000049126 ENSSTUG00000049134 ENSSTUG00000049163 ENSSTUG00000049183 ENSSTUG00000049187 pdia2 (ENSSTUG00000049200) ENSSTUG00000049246 ENSSTUG00000049259 ENSSTUG00000049261 ENSSTUG00000049268 actb2 (ENSSTUG00000049274) ##22 ENSSTUG00000049295 ENSSTUG00000049300 FSCN1 (ENSSTUG00000049310) ##21 Acanthomorphata ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.f ##22 Cod MODERN SPECIES 16 ENSGMOG00000017891 ENSGMOG00000035340 ENSGMOG00000017949 ##21 ENSGMOG00000030119 ENSGMOG00000017959 ENSGMOG00000030234 rdh8b (ENSGMOG00000017977) ENSGMOG00000017989 olfm2b (ENSGMOG00000015213) TRIP10 (ENSGMOG00000007571) ENSGMOG00000007578 VAV1 (ENSGMOG00000007593) ENSGMOG00000007612 ENSGMOG00000007618 ENSGMOG00000037081 actb1 (ENSGMOG00000023192) ##22 fbxl18 (ENSGMOG00000007631) ENSGMOG00000007639 ENSGMOG00000007653 smcr8b (ENSGMOG00000033083) mief2 (ENSGMOG00000007684) alkbh5 (ENSGMOG00000007690) ENSGMOG00000007731 ENSGMOG00000036131 ENSGMOG00000007752 ENSGMOG00000030890 ENSGMOG00000007758 ENSGMOG00000007771 ENSGMOG00000027409 FOXK1 (ENSGMOG00000007792) ENSGMOG00000035483 Euacanthomorphacea ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.f ##22 Percomorphaceae ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.f ##22 Percomorphaceae_B ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.f ##22 Ovalentaria ANCESTRAL SPECIES ENSGT00950000183249 ENSGT00940000159148.b ENSGT01060000248589.A.d ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00990000204057 ENSGT00530000063725.p.f.d ENSGT01100000263598 ENSGT00950000182960.a.a.b.e.b ##22 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00950000182960.a.a.b.f ##22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000155335.s.a ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 ENSGT00940000177139 ENSGT00950000183183.b.a ENSGT00950000183183.b.b Ovalentaria_B ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.f ##22 Pomacentridae ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.f ##22 Pomacentridae_A ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.f ##22 Amphiprion ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.f ##22 Clown anemonefish MODERN SPECIES 1281 ENSAOCG00000024403 ENSAOCG00000024394 ENSAOCG00000001774 ENSAOCG00000002091 SLC35D3 (ENSAOCG00000002808) ENSAOCG00000024346 tgfb3 (ENSAOCG00000024329) ENSAOCG00000024318 ENSAOCG00000024307 HEY1 (ENSAOCG00000024291) stmn2b (ENSAOCG00000024287) upp1 (ENSAOCG00000001766) ENSAOCG00000024277 rbm12bb (ENSAOCG00000024270) ENSAOCG00000024264 ENSAOCG00000024246 ##22 ENSAOCG00000024239 NBEAL2 (ENSAOCG00000024229) ccdc12 (ENSAOCG00000024127) ENSAOCG00000024071 ENSAOCG00000024053 cep72 (ENSAOCG00000024022) TPPP (ENSAOCG00000001755) ZDHHC11 (ENSAOCG00000023992) brd9 (ENSAOCG00000023980) trip13 (ENSAOCG00000023950) NKD2 (ENSAOCG00000002255) PLEKHG4B (ENSAOCG00000023913) ENSAOCG00000023864 ptdss1a (ENSAOCG00000001746) NHLRC1 (ENSAOCG00000023848) Cichlidae ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.f ##22 Pseudocrenilabrinae ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.f ##22 Pseudocrenilabrinae_A ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.f ##22 Haplochromini ANCESTRAL SPECIES ENSGT00950000182960.a.a.b.f ##22 Burton s mouthbrooder MODERN SPECIES 374 ENSHBUG00000018220 ENSHBUG00000018238 actb1 (ENSHBUG00000018251) ##22 fbxl18 (ENSHBUG00000018265) PTCD1 (ENSHBUG00000018275) ENSHBUG00000018284 smcr8b (ENSHBUG00000018288) mief2 (ENSHBUG00000018314) alkbh5 (ENSHBUG00000018324) ENSHBUG00000018462 ENSHBUG00000018585 hapstr1b (ENSHBUG00000018610) abcg2c (ENSHBUG00000018618) ENSHBUG00000018633 arpc1a (ENSHBUG00000018663) arpc1b (ENSHBUG00000018691) ENSHBUG00000018723 radil (ENSHBUG00000018755) Osteoglossiformes ANCESTRAL SPECIES 99 ENSGT00940000157636 ENSGT00940000158573.f ENSGT00940000157747.b ENSGT00950000182958.b.a.a.a.b ENSGT00940000159507.h ENSGT00940000159293.g ENSGT00940000157972.a ENSGT00940000155537.b ENSGT00950000183183.b.b.b ENSGT00950000183183.b.a.a ENSGT00940000160705.C.b.c.b ENSGT00940000158690.c ENSGT00940000165400.q ENSGT00510000048032 ENSGT00950000183157.a.a.b.b ##21 ENSGT00950000182960.a.a.b ##22 ENSGT00390000015109 ENSGT00940000157099.v.b ENSGT00950000182898.a.b.d ENSGT00950000182957.b.a.b.a.b.a ENSGT00950000182957.b.a.b.a.b.b P. kingsleyae DUPLICATION P. kingsleyae MODERN SPECIES 267 ENSPKIG00000018731 ENSPKIG00000018703 ENSPKIG00000018617 foxk1 (ENSPKIG00000018567) ap5z1 (ENSPKIG00000018520) RADIL (ENSPKIG00000018461) MMD2 (ENSPKIG00000018421) ENSPKIG00000018399 wipi2 (ENSPKIG00000018359) arpc1b (ENSPKIG00000018299) arpc1a (ENSPKIG00000018244) ENSPKIG00000018167 SMURF1 (ENSPKIG00000018100) ENSPKIG00000018080 FSCN1 (ENSPKIG00000018067) ##21 ENSPKIG00000018028 ##22 ENSPKIG00000017991 ENSPKIG00000017952 slc29a4a (ENSPKIG00000017922) rusf1 (ENSPKIG00000017868) ENSPKIG00000017828 cd2bp2 (ENSPKIG00000017798) pheta2 (ENSPKIG00000017787) mylpfa (ENSPKIG00000017761) TBC1D10B (ENSPKIG00000017726) hsd3b7 (ENSPKIG00000017706) ENSPKIG00000017668 ENSPKIG00000017640 erbb2 (ENSPKIG00000017523) CCDC47 (ENSPKIG00000017431) dcaf7 (ENSPKIG00000017395) P. kingsleyae MODERN SPECIES 144 GNA12 (ENSPKIG00000011669) CARD11 (ENSPKIG00000011579) SDK1 (ENSPKIG00000011127) cyp3a65 (ENSPKIG00000010991) FOXK1 (ENSPKIG00000010956) radil (ENSPKIG00000010919) MMD2 (ENSPKIG00000010889) WIPI2 (ENSPKIG00000010854) arpc1b (ENSPKIG00000010821) ARPC1A (ENSPKIG00000010763) SMURF1 (ENSPKIG00000010654) ENSPKIG00000010588 ENSPKIG00000010562 RNF216 (ENSPKIG00000010505) fscn1a (ENSPKIG00000010464) ##21 ENSPKIG00000010452 ##22 fbxl18 (ENSPKIG00000010437) ENSPKIG00000010347 ENSPKIG00000010290 ENSPKIG00000010234 Asian bonytongue DUPLICATION Asian bonytongue MODERN SPECIES 18 chst12a (ENSSFOG00015027643) EIF3B (ENSSFOG00015005824) CARD11 (ENSSFOG00015005860) SDK1 (ENSSFOG00015005958) cyp3c4 (ENSSFOG00015006064) foxk1 (ENSSFOG00015006080) ap5z1 (ENSSFOG00015006120) RADIL (ENSSFOG00015006152) MMD2 (ENSSFOG00015031989) wipi2 (ENSSFOG00015031380) arpc1b (ENSSFOG00015006288) arpc1a (ENSSFOG00015006328) ENSSFOG00015006391 SMURF1 (ENSSFOG00015006534) ENSSFOG00015006633 ##21 actb2 (ENSSFOG00015006657) ##22 TNRC18 (ENSSFOG00015006692) ENSSFOG00015030220 ENSSFOG00015026914 slc29a4a (ENSSFOG00015006743) rusf1 (ENSSFOG00015006807) ENSSFOG00015032733 ENSSFOG00015006925 cd2bp2 (ENSSFOG00015006940) pheta2 (ENSSFOG00015024956) mylpfb (ENSSFOG00015006956) TBC1D10B (ENSSFOG00015006971) hsd3b7 (ENSSFOG00015006982) ENSSFOG00015007013 ENSSFOG00015007068 ENSSFOG00015007083 Asian bonytongue MODERN SPECIES 12 SDK1 (ENSSFOG00015005050) cyp3a65 (ENSSFOG00015005145) ENSSFOG00015004677 cyp3a65 (ENSSFOG00015003914) FOXK1 (ENSSFOG00015003826) radil (ENSSFOG00015003792) MMD2 (ENSSFOG00015030866) WIPI2 (ENSSFOG00015003706) arpc1b (ENSSFOG00015003662) ARPC1A (ENSSFOG00015003595) ENSSFOG00015003478 SMURF1 (ENSSFOG00015003386) ENSSFOG00015003373 RNF216 (ENSSFOG00015003365) FSCN1 (ENSSFOG00015028791) ##21 ENSSFOG00015003294 ##22 fbxl18 (ENSSFOG00015003278) TNRC18 (ENSSFOG00015003261) SLC29A4 (ENSSFOG00015003203) ENSSFOG00015003168 ENSSFOG00015003116 ears2 (ENSSFOG00015019361) HS3ST4 (ENSSFOG00015024007) hs3st2 (ENSSFOG00015005525) USP31 (ENSSFOG00015019296) cog7 (ENSSFOG00015019251) ENSSFOG00015019229 ENSSFOG00015019215 pdpk1b (ENSSFOG00015019160) kctd5a (ENSSFOG00015027058) ube2ia (ENSSFOG00015019101) Cyclostomata ANCESTRAL SPECIES 23 ENSGT00950000182960.a.b ##22 ENSGT00950000182960.a.a #22 ENSGT00390000015109 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00390000014300 Lamprey DUPLICATION Lamprey MODERN SPECIES 5960 ENSPMAG00000010086 #22 Lamprey MODERN SPECIES 2373 ENSPMAG00000004161 #22 ENSPMAG00000004148 Hagfish DUPLICATION Hagfish DUPLICATION Hagfish MODERN SPECIES 1251 ENSEBUG00000016030 ENSEBUG00000013875 ENSEBUG00000012525 ENSEBUG00000014717 ENSEBUG00000015711 ENSEBUG00000016164 ENSEBUG00000012412 #22 slc29a4a (ENSEBUG00000005348) bud31 (ENSEBUG00000015223) pdap1a (ENSEBUG00000007834) METTL26 (ENSEBUG00000011794) hgs (ENSEBUG00000013564) #13 ENSEBUG00000016894 ENSEBUG00000007662 ENSEBUG00000009389 ENSEBUG00000003279 ENSEBUG00000006600 ENSEBUG00000010636 ENSEBUG00000008767 ENSEBUG00000013463 ENSEBUG00000002499 ENSEBUG00000004651 Hagfish MODERN SPECIES 1093 ENSEBUG00000009146 #22 ENSEBUG00000001044 ENSEBUG00000010989 ENSEBUG00000008122 ENSEBUG00000008511 RAC1 (ENSEBUG00000014547) Hagfish MODERN SPECIES 1182 ENSEBUG00000010667 ENSEBUG00000015412 ENSEBUG00000003144 gnal (ENSEBUG00000008450) ENSEBUG00000006401 ENSEBUG00000003467 ENSEBUG00000014202 CMIP (ENSEBUG00000016678) ENSEBUG00000015505 ENSEBUG00000008112 ENSEBUG00000002143 wdr24 (ENSEBUG00000015849) ENSEBUG00000009736 ENSEBUG00000007593 ##22 ENSEBUG00000004255 ##22 ENSEBUG00000008004 #22 ENSEBUG00000015257 ##22 ENSEBUG00000014594 ##22 ENSEBUG00000003162 ENSEBUG00000014718 ENSEBUG00000002748 luc7l (ENSEBUG00000003927) mpg (ENSEBUG00000000529) ENSEBUG00000003222 #27 ENSEBUG00000008288 dpydb (ENSEBUG00000015615) ENSEBUG00000001469 ENSEBUG00000011104 ENSEBUG00000001821 stk11 (ENSEBUG00000013249) ENSEBUG00000007689 Ciona ANCESTRAL SPECIES 1429 ENSGT00950000182960.a.b.a.a ##22 ENSGT00950000182960.a.a #22 Ciona intestinalis MODERN SPECIES 75 ENSCING00000019649 ENSCING00000001009 ENSCING00000001010 ENSCING00000001019 ENSCING00000000839 ENSCING00000020027 ENSCING00000022918 ENSCING00000014702 ENSCING00000023773 ENSCING00000019474 ENSCING00000018563 ENSCING00000024599 ENSCING00000000843 ENSCING00000000846 ##22 ENSCING00000024231 ENSCING00000008797 #22 ENSCING00000008777 ##22 ENSCING00000010083 ENSCING00000000848 ##22 ENSCING00000008771 ENSCING00000024432 ENSCING00000008770 ENSCING00000019212 ENSCING00000019491 ENSCING00000018683 ENSCING00000019883 ENSCING00000022333 ENSCING00000021665 ENSCING00000024330 ENSCING00000021945 ENSCING00000021142 Chordata ANCESTRAL SPECIES 178 ENSGT00950000182960.a.a #22 ENSGT00950000182960.a.b ##22 Ciona DUPLICATION Ciona DUPLICATION Ciona ANCESTRAL SPECIES 1429 ENSGT00950000182960.a.a #22 ENSGT00950000182960.a.b.a.a ##22 Ciona savignyi MODERN SPECIES 82 ENSCSAVG00000008329 ENSCSAVG00000008332 ENSCSAVG00000008349 ENSCSAVG00000008389 ENSCSAVG00000008391 ENSCSAVG00000008401 ENSCSAVG00000008405 ENSCSAVG00000008407 ENSCSAVG00000008409 ENSCSAVG00000008424 ENSCSAVG00000008427 ENSCSAVG00000008469 ENSCSAVG00000008478 ENSCSAVG00000008479 ENSCSAVG00000008480 ENSCSAVG00000008481 ##22 ENSCSAVG00000008760 ENSCSAVG00000008768 ##22 ENSCSAVG00000009050 ENSCSAVG00000009051 ENSCSAVG00000009054 ENSCSAVG00000009056 ENSCSAVG00000009058 ENSCSAVG00000009060 ENSCSAVG00000009063 ENSCSAVG00000009066 ENSCSAVG00000009068 ENSCSAVG00000009072 ENSCSAVG00000009074 ENSCSAVG00000009077 ENSCSAVG00000009081 Ciona intestinalis MODERN SPECIES 75 ENSCING00000024330 ENSCING00000021665 ENSCING00000022333 ENSCING00000019883 ENSCING00000018683 ENSCING00000019491 ENSCING00000019212 ENSCING00000008770 ENSCING00000024432 ENSCING00000008771 ENSCING00000000848 ##22 ENSCING00000010083 ENSCING00000008777 ##22 ENSCING00000008797 #22 ENSCING00000024231 ENSCING00000000846 ##22 ENSCING00000000843 ENSCING00000024599 ENSCING00000018563 ENSCING00000019474 ENSCING00000023773 ENSCING00000014702 ENSCING00000022918 ENSCING00000020027 ENSCING00000000839 ENSCING00000001019 ENSCING00000001010 ENSCING00000001009 ENSCING00000019649 ENSCING00000019913 ENSCING00000022441 Ciona ANCESTRAL SPECIES ENSGT00950000182960.a.b.a.b ##22 Ciona savignyi MODERN SPECIES 82 ENSCSAVG00000008349 ENSCSAVG00000008389 ENSCSAVG00000008391 ENSCSAVG00000008401 ENSCSAVG00000008405 ENSCSAVG00000008407 ENSCSAVG00000008409 ENSCSAVG00000008424 ENSCSAVG00000008427 ENSCSAVG00000008469 ENSCSAVG00000008478 ENSCSAVG00000008479 ENSCSAVG00000008480 ENSCSAVG00000008481 ##22 ENSCSAVG00000008760 ENSCSAVG00000008768 ##22 ENSCSAVG00000009050 ENSCSAVG00000009051 ENSCSAVG00000009054 ENSCSAVG00000009056 ENSCSAVG00000009058 ENSCSAVG00000009060 ENSCSAVG00000009063 ENSCSAVG00000009066 ENSCSAVG00000009068 ENSCSAVG00000009072 ENSCSAVG00000009074 ENSCSAVG00000009077 ENSCSAVG00000009081 ENSCSAVG00000009085 ENSCSAVG00000009133 Ciona ANCESTRAL SPECIES ENSGT00950000182960.a.b.b ##22 Ciona savignyi MODERN SPECIES 276 ENSCSAVG00000007884 ENSCSAVG00000007881 ENSCSAVG00000007879 ENSCSAVG00000007878 ENSCSAVG00000007874 ENSCSAVG00000007873 ENSCSAVG00000007867 ENSCSAVG00000007865 ENSCSAVG00000007864 ENSCSAVG00000007863 ENSCSAVG00000007861 ENSCSAVG00000007859 ENSCSAVG00000007850 ENSCSAVG00000007249 ENSCSAVG00000007248 ENSCSAVG00000007171 ##22 ENSCSAVG00000007166 ENSCSAVG00000007143 ENSCSAVG00000007136 ENSCSAVG00000007104 ENSCSAVG00000007100 ENSCSAVG00000007086 ENSCSAVG00000006736 ENSCSAVG00000006721 ENSCSAVG00000006718 ENSCSAVG00000006697 ENSCSAVG00000006688 ENSCSAVG00000006683 ENSCSAVG00000006678 ENSCSAVG00000006671 ENSCSAVG00000006660 Ciona intestinalis MODERN SPECIES 75 ENSCING00000001019 ENSCING00000000839 ENSCING00000020027 ENSCING00000022918 ENSCING00000014702 ENSCING00000023773 ENSCING00000019474 ENSCING00000018563 ENSCING00000024599 ENSCING00000000843 ENSCING00000000846 ##22 ENSCING00000024231 ENSCING00000008797 #22 ENSCING00000008777 ##22 ENSCING00000010083 ENSCING00000000848 ##22 ENSCING00000008771 ENSCING00000024432 ENSCING00000008770 ENSCING00000019212 ENSCING00000019491 ENSCING00000018683 ENSCING00000019883 ENSCING00000022333 ENSCING00000021665 ENSCING00000024330 ENSCING00000021945 ENSCING00000021142 zf(c3h)-14 (ENSCING00000023848) ENSCING00000021398 ENSCING00000021966 Vertebrata ANCESTRAL SPECIES 90 ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a #22 ENSGT00950000182960.a.b ##22 Cyclostomata ANCESTRAL SPECIES 23 ENSGT00390000014300 ENSGT00950000182898.a.b ENSGT00940000157099 ENSGT00390000015109 ENSGT00950000182960.a.a #22 ENSGT00950000182960.a.b ##22 Hagfish DUPLICATION Hagfish DUPLICATION Hagfish MODERN SPECIES 1182 ENSEBUG00000015412 ENSEBUG00000003144 gnal (ENSEBUG00000008450) ENSEBUG00000006401 ENSEBUG00000003467 ENSEBUG00000014202 CMIP (ENSEBUG00000016678) ENSEBUG00000015505 ENSEBUG00000008112 ENSEBUG00000002143 wdr24 (ENSEBUG00000015849) ENSEBUG00000009736 ENSEBUG00000007593 ##22 ENSEBUG00000004255 ##22 ENSEBUG00000008004 #22 ENSEBUG00000015257 ##22 ENSEBUG00000014594 ##22 ENSEBUG00000003162 ENSEBUG00000014718 ENSEBUG00000002748 luc7l (ENSEBUG00000003927) mpg (ENSEBUG00000000529) ENSEBUG00000003222 #27 ENSEBUG00000008288 dpydb (ENSEBUG00000015615) ENSEBUG00000001469 ENSEBUG00000011104 ENSEBUG00000001821 stk11 (ENSEBUG00000013249) ENSEBUG00000007689 ENSEBUG00000016863 Hagfish MODERN SPECIES 1182 ENSEBUG00000016812 ENSEBUG00000006171 ENSEBUG00000010667 ENSEBUG00000015412 ENSEBUG00000003144 gnal (ENSEBUG00000008450) ENSEBUG00000006401 ENSEBUG00000003467 ENSEBUG00000014202 CMIP (ENSEBUG00000016678) ENSEBUG00000015505 ENSEBUG00000008112 ENSEBUG00000002143 wdr24 (ENSEBUG00000015849) ENSEBUG00000009736 ENSEBUG00000007593 ##22 ENSEBUG00000004255 ##22 ENSEBUG00000008004 #22 ENSEBUG00000015257 ##22 ENSEBUG00000014594 ##22 ENSEBUG00000003162 ENSEBUG00000014718 ENSEBUG00000002748 luc7l (ENSEBUG00000003927) mpg (ENSEBUG00000000529) ENSEBUG00000003222 #27 ENSEBUG00000008288 dpydb (ENSEBUG00000015615) ENSEBUG00000001469 ENSEBUG00000011104 ENSEBUG00000001821 Hagfish DUPLICATION Hagfish MODERN SPECIES 1182 stk11 (ENSEBUG00000013249) ENSEBUG00000001821 ENSEBUG00000011104 ENSEBUG00000001469 dpydb (ENSEBUG00000015615) ENSEBUG00000008288 ENSEBUG00000003222 #27 mpg (ENSEBUG00000000529) luc7l (ENSEBUG00000003927) ENSEBUG00000002748 ENSEBUG00000014718 ENSEBUG00000003162 ENSEBUG00000014594 ##22 ENSEBUG00000015257 ##22 ENSEBUG00000008004 #22 ENSEBUG00000004255 ##22 ENSEBUG00000007593 ##22 ENSEBUG00000009736 wdr24 (ENSEBUG00000015849) ENSEBUG00000002143 ENSEBUG00000008112 ENSEBUG00000015505 CMIP (ENSEBUG00000016678) ENSEBUG00000014202 ENSEBUG00000003467 ENSEBUG00000006401 gnal (ENSEBUG00000008450) ENSEBUG00000003144 ENSEBUG00000015412 ENSEBUG00000010667 ENSEBUG00000006171 Hagfish MODERN SPECIES 1182 ENSEBUG00000003144 gnal (ENSEBUG00000008450) ENSEBUG00000006401 ENSEBUG00000003467 ENSEBUG00000014202 CMIP (ENSEBUG00000016678) ENSEBUG00000015505 ENSEBUG00000008112 ENSEBUG00000002143 wdr24 (ENSEBUG00000015849) ENSEBUG00000009736 ENSEBUG00000007593 ##22 ENSEBUG00000004255 ##22 ENSEBUG00000008004 #22 ENSEBUG00000015257 ##22 ENSEBUG00000014594 ##22 ENSEBUG00000003162 ENSEBUG00000014718 ENSEBUG00000002748 luc7l (ENSEBUG00000003927) mpg (ENSEBUG00000000529) ENSEBUG00000003222 #27 ENSEBUG00000008288 dpydb (ENSEBUG00000015615) ENSEBUG00000001469 ENSEBUG00000011104 ENSEBUG00000001821 stk11 (ENSEBUG00000013249) ENSEBUG00000007689 ENSEBUG00000016863 ENSEBUG00000002482 Gnathostomata ANCESTRAL SPECIES 324 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00410000026495.C ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.b ##22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 Elephant shark MODERN SPECIES 1495 csnk1db (ENSCMIG00000018254) slc16a3a (ENSCMIG00000018279) CCDC57 (ENSCMIG00000018281) ccdc57 (ENSCMIG00000018291) dus1l (ENSCMIG00000018311) gps1 (ENSCMIG00000018321) rfng (ENSCMIG00000018325) dcxr (ENSCMIG00000018326) rac3a (ENSCMIG00000018330) LRRC45 (ENSCMIG00000018338) TSPAN10 (ENSCMIG00000018340) #18 nploc4 (ENSCMIG00000018376) #19 ENSCMIG00000018453 FAAP100 (ENSCMIG00000018457) #20 fscn2b (ENSCMIG00000018465) #21 actg1 (ENSCMIG00000018563) ##22 BAHCC1 (ENSCMIG00000018714) #23 ENSCMIG00000018741 #25 ENSCMIG00000018770 #26 ENSCMIG00000018772 #27 FAM104B (ENSCMIG00000018780) ENSCMIG00000018782 SDK2 (ENSCMIG00000018805) cdc42ep4a (ENSCMIG00000018819) rpl38 (ENSCMIG00000018821) ttyh2l (ENSCMIG00000018836) ENSCMIG00000018844 KIF19 (ENSCMIG00000018846) ABCA5 (ENSCMIG00000018894) ENSCMIG00000018931 fam20a (ENSCMIG00000018937) Euteleostomi ANCESTRAL SPECIES 240 ENSGT00950000182983.A.a.a ENSGT00940000160948 ENSGT00950000182961.a.a ENSGT00390000004169 #15 ENSGT00390000003596 #16 ENSGT00390000013260.B #17 ENSGT00940000160874 #18 ENSGT00390000018731 #19 ENSGT00410000026495.C ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.b ##22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 Sarcopterygii ANCESTRAL SPECIES ENSGT00950000182960.a.b ##22 Tetrapoda ANCESTRAL SPECIES ENSGT00950000182960.a.b ##22 Anura ANCESTRAL SPECIES ENSGT00950000182960.a.b ##22 Leishan spiny toad MODERN SPECIES DGCR8 (ENSLLEG00000005288) TRMT2A (ENSLLEG00000005242) ENSLLEG00000005218 ENSLLEG00000005203 ZDHHC8 (ENSLLEG00000005179) ENSLLEG00000005055 PGAM5 (ENSLLEG00000005003) ANKLE2 (ENSLLEG00000004948) GOLGA3 (ENSLLEG00000004881) CHFR (ENSLLEG00000004811) ENSLLEG00000025300 ENSLLEG00000025289 FBRSL1 (ENSLLEG00000024714) ENSLLEG00000024667 GALNT9 (ENSLLEG00000024489) ENSLLEG00000024451 ##22 NOC4L (ENSLLEG00000024358) ENSLLEG00000024287 ENSLLEG00000023246 ENSLLEG00000023107 ENSLLEG00000022501 MMP17 (ENSLLEG00000022316) ENSLLEG00000022283 SFSWAP (ENSLLEG00000021821) ADGRD1 (ENSLLEG00000021394) ENSLLEG00000021197 STX2 (ENSLLEG00000021018) ENSLLEG00000020970 ENSLLEG00000020963 RIMBP2 (ENSLLEG00000019367) ENSLLEG00000018605 Amniota ANCESTRAL SPECIES ENSGT00950000182960.a.b ##22 Mammalia ANCESTRAL SPECIES ENSGT00950000182960.a.b ##22 Theria ANCESTRAL SPECIES ENSGT00950000182960.a.b ##22 Eutheria ANCESTRAL SPECIES ENSGT00950000182960.a.b ##22 Boreoeutheria ANCESTRAL SPECIES ENSGT00950000182960.a.b ##22 Laurasiatheria ANCESTRAL SPECIES ENSGT00950000182960.a.b ##22 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00950000182960.a.b ##22 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00950000182960.a.b ##22 Carnivora ANCESTRAL SPECIES ENSGT00950000182960.a.b ##22 Caniformia ANCESTRAL SPECIES ENSGT00950000182960.a.b ##22 Caniformia_b ANCESTRAL SPECIES ENSGT00950000182960.a.b ##22 Ursidae ANCESTRAL SPECIES ENSGT00950000182960.a.b ##22 Giant Panda MODERN SPECIES 1927 ENSAMEG00000027177 ##22 Actinopterygii ANCESTRAL SPECIES 177 ENSGT00390000011309 ENSGT00390000011093 ENSGT00390000012872 ENSGT00950000182983.A.a.b ENSGT00940000158348 ENSGT00940000157948.D ENSGT00940000157519 ENSGT00940000154076.C.c ENSGT00390000002373 ENSGT00940000159620.b.a ENSGT00390000014681 ENSGT00390000011615.A ENSGT00510000047537 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.b ##22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 Neopterygii ANCESTRAL SPECIES 6 ENSGT00390000011093 ENSGT00390000012872 ENSGT00950000182983.A.a.b ENSGT00940000158348 ENSGT00940000157948.D ENSGT00940000157519 ENSGT00940000154076.C.c ENSGT00390000002373 ENSGT00940000159620.b.a ENSGT00940000159620.b.b ENSGT00390000014681 ENSGT00390000011615.A ENSGT00510000047537 ENSGT00390000016682 #20 ENSGT00950000183157.a.a.a #21 ENSGT00950000182960.a.b ##22 ENSGT00940000160116 #23 ENSGT00940000159369 #25 ENSGT00520000061927 #26 ENSGT00390000015076 #27 ENSGT00940000167489 ENSGT00970000197340 ENSGT00940000153560.b.a.a #31 ENSGT00940000154244.A.a.b #30 ENSGT01000000214817 ENSGT00940000154244.A.a.a #30 ENSGT00940000164863 ENSGT00390000001758 #28 ENSGT00630000089884.D ENSGT00410000026495.C.b ENSGT00940000182180 Spotted gar MODERN SPECIES 648 tk1 (ENSLOCG00000012676) afmid (ENSLOCG00000012683) cant1a (ENSLOCG00000012695) ENSLOCG00000012700 timp2b (ENSLOCG00000012706) usp36 (ENSLOCG00000012710) cyth1b (ENSLOCG00000012720) DNAH17 (ENSLOCG00000012734) PGS1 (ENSLOCG00000012756) socs3b (ENSLOCG00000017758) tha1 (ENSLOCG00000012764) TMEM235 (ENSLOCG00000012771) birc5a (ENSLOCG00000012776) FAAP100 (ENSLOCG00000012780) #20 fscn2b (ENSLOCG00000012788) #21 ENSLOCG00000012791 ##22 BAHCC1 (ENSLOCG00000012795) #23 SLC38A10 (ENSLOCG00000012804) #25 TEPSIN (ENSLOCG00000012812) #27 ENSLOCG00000012814 cdc42ep4a (ENSLOCG00000017759) SDK2 (ENSLOCG00000012818) rpl38 (ENSLOCG00000012842) ttyh2l (ENSLOCG00000012847) ENSLOCG00000012856 KIF19 (ENSLOCG00000012867) ABCA5 (ENSLOCG00000012878) chmp6b (ENSLOCG00000012913) #32 baiap2a (ENSLOCG00000012924) #31 AATK (ENSLOCG00000012934) #30 ENSLOCG00000012947 Osteoglossocephalai ANCESTRAL SPECIES 358 ENSGT00950000182960.a.b ##22 ENSGT00940000160116.b #23 ENSGT00390000003070.a.a ENSGT00390000011615.A.a ENSGT00390000003070.b ENSGT00940000156691 ENSGT00390000017548.b.a ENSGT00940000161116.w.a ENSGT00390000007463 Osteoglossiformes ANCESTRAL SPECIES 283 ENSGT00940000157519.b.b ENSGT00940000159620.b.b ENSGT00390000014681 ENSGT00390000011615.A.a ENSGT00950000183157.a.a.a.d #21 ENSGT00950000182960.a.b ##22 ENSGT00950000182960.a.a.a.a ##22 ENSGT00940000160116.b #23 ENSGT00390000003070.a.a.o ENSGT00940000156691 ENSGT00390000017548.b.a ENSGT00940000161116.w.a.b ENSGT00390000007463 ENSGT01030000234586.B.a.a.b ENSGT00940000157836.a ENSGT00950000182983.A.a.a.a ENSGT00950000182961.a.a.f ENSGT00390000004169 #15 ENSGT00390000013260.C ##17 ENSGT00390000018731.f #19 Asian bonytongue MODERN SPECIES 18 ENSSFOG00015005544 ENSSFOG00015031566 SRSF1 (ENSSFOG00015026484) ENSSFOG00015010652 SYNGR2 (ENSSFOG00015028002) CANT1 (ENSSFOG00015025186) ENSSFOG00015010580 timp2a (ENSSFOG00015032547) usp36 (ENSSFOG00015010517) cyth1a (ENSSFOG00015010460) socs3b (ENSSFOG00015010403) tha1 (ENSSFOG00015025520) tha1 (ENSSFOG00015025357) ENSSFOG00015010351 FSCN2 (ENSSFOG00015010309) #21 ENSSFOG00015010279 ##22 ENSSFOG00015008310 ##22 BAHCC1 (ENSSFOG00015024385) #23 ENSSFOG00015008124 OTOP2 (ENSSFOG00015008034) USH1G (ENSSFOG00015008016) TRIM16 (ENSSFOG00015008006) ENSSFOG00015007992 ENSSFOG00015007980 KCNJ2 (ENSSFOG00015007898) MAP2K6 (ENSSFOG00015025948) BTBD17 (ENSSFOG00015030471) gprc5c (ENSSFOG00015007796) ccdc137 (ENSSFOG00015025000) #15 pde6ga (ENSSFOG00015007768) ##17 nploc4 (ENSSFOG00015007652) #19 Clupeocephala ANCESTRAL SPECIES 71 ENSGT00950000183044.a.a.a.a ENSGT00940000175118 ENSGT00950000182933.A.a.a ENSGT00390000015892.b ENSGT00390000002725 ENSGT01050000244894.b.b.d.b ENSGT00950000182935.B.a.d ENSGT00390000012872.a ENSGT00950000182983.A.a.b ENSGT00940000158348.e.b ENSGT00940000157948.D ENSGT00940000157519.b.b ENSGT00940000159620.b.b ENSGT00390000011615.A.a ENSGT00950000183157.a.a.a.a #21 ENSGT00950000182960.a.b ##22 ENSGT00950000182960.a.a.a.a ##22 ENSGT00940000157099 ENSGT00950000182898.a.b ENSGT00940000165557 ENSGT00940000155520 ENSGT00940000160116.b #23 ENSGT01090000260240 ENSGT00390000003070.a.a ENSGT00940000156691 ENSGT00390000017548.b.a ENSGT00940000161116.w.a ENSGT00390000007463 ENSGT00390000004428.a.a ENSGT00920000149199 ENSGT01080000257365.a.c Otomorpha ANCESTRAL SPECIES 117 ENSGT00940000160070.b.a.a ENSGT00950000182933.A.a.a ENSGT00390000015892.b ENSGT00390000002725 ENSGT01050000244894.b.b.d.b ENSGT00950000182935.B.a.d ENSGT00390000012872.a ENSGT00950000182983.A.a.b ENSGT00940000158348.e.b ENSGT00940000157948.D ENSGT00940000157519.b.b ENSGT00940000159620.b.b.f ENSGT00390000011615.A.a ENSGT00510000047537.wb.a ENSGT00950000183157.a.a.a.a #21 ENSGT00950000182960.a.b ##22 ENSGT00940000160116.b #23 ENSGT01090000260240 ENSGT00390000003070.a.a ENSGT00940000156691 ENSGT00390000017548.b.a ENSGT00940000161116.w.a ENSGT00390000007463 ENSGT00390000004428.a.a Otophysi ANCESTRAL SPECIES 97 ENSGT00950000182933.A.a.a ENSGT00390000015892.b ENSGT00390000002725 ENSGT01050000244894.b.b.d.b ENSGT00950000182935.B.a.d ENSGT00390000012872.a ENSGT00950000182983.A.a.b ENSGT00940000158348.e.b ENSGT00940000157948.D ENSGT00940000157519.b.b ENSGT00940000159620.b.b.f ENSGT00390000011615.A.a ENSGT00510000047537.wb.a ENSGT00950000183157.a.a.a.a #21 ENSGT00950000182960.a.b ##22 ENSGT00940000160116.b #23 ENSGT01090000260240 ENSGT00390000003070.a.a ENSGT00940000156691 ENSGT00390000017548.b.a ENSGT00940000161116.w.a ENSGT00390000007463 ENSGT00390000004428.a.a ENSGT00920000149199 ENSGT00390000018295 ENSGT00940000153500.a.a.w.b.g ENSGT00390000014547 ENSGT00940000155825.o ENSGT01050000244961.a.a.b ENSGT00940000156104.A Characiphysae ANCESTRAL SPECIES 33 ENSGT00950000182803.A.a.b.k.b ENSGT00940000164958.b ENSGT00940000155556.c ENSGT00940000157100.b ENSGT00390000014840.b ENSGT00410000026495.C.b ENSGT00940000160874 #18 ENSGT00950000182983.A.a.b ENSGT00940000158348.e.b ENSGT00940000157948.D ENSGT00940000157519.b.b ENSGT00940000159620.b.b.f ENSGT00390000011615.A.a ENSGT00510000047537.wb.a ENSGT00950000183157.a.a.a.a #21 ENSGT00950000182960.a.b ##22 ENSGT00940000160116.b #23 ENSGT01090000260240 ENSGT00390000003070.a.a ENSGT00940000156691 ENSGT00390000017548.b.a ENSGT00940000161116.w.a ENSGT00390000007463 ENSGT00390000004428.a.a ENSGT00920000149199.a.b ENSGT00920000149199.a.a ENSGT00390000018295 ENSGT00940000153500.a.a.w.b.g ENSGT00390000014547 ENSGT00940000155825.o ENSGT01050000244961.a.a.b Characiphysae_b ANCESTRAL SPECIES 24 ENSGT00940000164958.b ENSGT00940000155556.c ENSGT00940000157100.b ENSGT00390000014840.b ENSGT00940000178574 ENSGT00410000026495.C.b ENSGT00940000160874 #18 ENSGT00950000182983.A.a.b ENSGT00940000158348.e.b ENSGT00940000157948.D ENSGT00940000157519.b.b ENSGT00940000159620.b.b.f ENSGT00390000011615.A.a ENSGT00510000047537.wb.a ENSGT00950000183157.a.a.a.a #21 ENSGT00950000182960.a.b ##22 ENSGT00940000160116.b #23 ENSGT01090000260240 ENSGT00390000003070.a.a ENSGT00940000156691 ENSGT00390000017548.b.a ENSGT00940000161116.w.a ENSGT00390000007463 ENSGT00390000004428.a.a ENSGT00920000149199.a.b ENSGT00920000149199.b ENSGT00390000018295 ENSGT00940000153500.a.a.w.b.g ENSGT00390000014547 ENSGT00940000155825.o ENSGT01050000244961.a.a.b Characoidei ANCESTRAL SPECIES 61 ENSGT00940000164958.b ENSGT00940000155556.c ENSGT00940000157100.b ENSGT00390000014840.b ENSGT00940000178574 ENSGT00410000026495.C.b ENSGT00940000160874 #18 ENSGT00950000182983.A.a.b ENSGT00940000158348.e.b ENSGT00940000157948.D ENSGT00940000157519.b.b ENSGT00940000159620.b.b.f ENSGT00390000011615.A.a ENSGT00510000047537.wb.a ENSGT00950000183157.a.a.a.a #21 ENSGT00950000182960.a.b ##22 ENSGT00940000160116.b #23 ENSGT01090000260240 ENSGT00390000003070.a.a ENSGT00940000156691 ENSGT00390000017548.b.a ENSGT00940000161116.w.a ENSGT00390000007463 ENSGT00390000004428.a.a ENSGT00920000149199.a.b ENSGT00920000149199.b ENSGT00920000149199.a.a ENSGT00390000018295 ENSGT00940000153500.a.a.w.b.g ENSGT00390000014547 ENSGT00940000155825.o Red-bellied piranha MODERN SPECIES 226 ENSPNAG00000009196 ENSPNAG00000009182 fscn2a (ENSPNAG00000009170) #21 ENSPNAG00000009149 ##22 BAHCC1 (ENSPNAG00000009135) #23 ENSPNAG00000009094 HID1 (ENSPNAG00000009054) OTOP2 (ENSPNAG00000029777) USH1G (ENSPNAG00000006583) ENSPNAG00000029769 ENSPNAG00000029763 zgc:112148 (ENSPNAG00000029757) ENSPNAG00000029750 ENSPNAG00000029743 stk19 (ENSPNAG00000029736) rac1b (ENSPNAG00000029731) SMIM10L2A (ENSPNAG00000029723) CYTH3 (ENSPNAG00000029717) CACNG5 (ENSPNAG00000029702) Euteleosteomorpha ANCESTRAL SPECIES ENSGT00950000183044.a.a.a.a ENSGT00950000182933.A.a.a ENSGT00390000015892.b ENSGT00390000002725 ENSGT00940000170019 ENSGT01050000244894.b.b.d.b ENSGT00950000182935.B.a.d ENSGT00390000012872.a ENSGT00950000182983.A.a.b ENSGT00940000158348.e.b ENSGT00940000157948.D ENSGT00940000157519.b.b ENSGT00940000159620.b.b ENSGT00390000011615.A.a ENSGT00950000183157.a.a.a.a #21 ENSGT00950000182960.a.b ##22 ENSGT00940000160116.b #23 ENSGT01090000260240 ENSGT00390000003070.a.a ENSGT00940000156691 ENSGT00390000017548.b.a ENSGT00940000161116.w.a ENSGT00390000007463 ENSGT00390000004428.a.a ENSGT00920000149199 ENSGT01080000257365.a.c ENSGT01030000234586.B.a.a.b ENSGT00940000157836.a ENSGT00950000182983.A.a.a.a ENSGT00950000182961.a.a.d ENSGT00390000004169 #15 Protacanthopterygii ANCESTRAL SPECIES 67 ENSGT00950000183044.a.a.a.a ENSGT00950000182933.A.a.a ENSGT00390000015892.b ENSGT00390000002725 ENSGT00940000170019 ENSGT01050000244894.b.b.d.b ENSGT00950000182935.B.a.d ENSGT00390000012872.a ENSGT00950000182983.A.a.b ENSGT00940000158348.e.b ENSGT00940000157948.D ENSGT00940000157519.b.b ENSGT00940000159620.b.b ENSGT00390000011615.A.a ENSGT00950000183157.a.a.a.a #21 ENSGT00950000182960.a.b ##22 ENSGT00940000160116.b #23 ENSGT01090000260240 ENSGT00390000003070.a.a ENSGT00940000156691 ENSGT00390000017548.b.a ENSGT00940000161116.w.a ENSGT00390000007463 ENSGT00390000004428.a.a ENSGT00920000149199 ENSGT01080000257365.a.c ENSGT01030000234586.B.a.a.b ENSGT00940000157836.a ENSGT00950000182983.A.a.a.a ENSGT00950000183145.A.a.m.a ENSGT00950000183145.B.a.a.b Salmoninae ANCESTRAL SPECIES 155 ENSGT00390000002725 ENSGT00940000170019 ENSGT01050000244894.b.b.d.b ENSGT00950000182935.B.a.d ENSGT00390000012872.a ENSGT01020000230665.a.a.b ENSGT00940000158348.e.b.f.b.a.a ENSGT00940000158348.e.b.f.a.a ENSGT00950000182983.A.a.b.s.b ENSGT00940000158348.e.b.e ENSGT00940000157948.D ENSGT00940000157519.b.b ENSGT00940000159620.b.b.h ENSGT00390000011615.A.a ENSGT00950000183157.a.a.a.a #21 ENSGT00950000182960.a.b ##22 ENSGT00940000160116.b #23 ENSGT01090000260240 ENSGT00390000003070.a.a ENSGT00940000156691 ENSGT00390000017548.b.a ENSGT00940000161116.w.a.c ENSGT00390000007463 ENSGT00390000004428.a.a ENSGT00390000003595.u.a.a ENSGT00920000149199 ENSGT01080000257365.a.c ENSGT01030000234586.B.a.a.b ENSGT00940000157836.a ENSGT00950000182983.A.a.a.a.a ENSGT01100000263529.a.a.b.j.a Huchen DUPLICATION Huchen MODERN SPECIES 1249 socs3a (ENSHHUG00000022223) socs3a (ENSHHUG00000022222) ENSHHUG00000022221 ENSHHUG00000022211 ENSHHUG00000022205 fscn2a (ENSHHUG00000022199) #21 ENSHHUG00000022164 ##22 ENSHHUG00000022155 Huchen MODERN SPECIES 4429 FSCN2 (ENSHHUG00000044709) #21 ENSHHUG00000044711 ##22 Salmoninae_a ANCESTRAL SPECIES 52 ENSGT00390000002725 ENSGT00940000170019 ENSGT01050000244894.b.b.d.b ENSGT00950000182935.B.a.d ENSGT00390000012872.a ENSGT01020000230665.a.a.a ENSGT00940000158348.e.b.f.b.a.a ENSGT00940000158348.e.b.f.a.a ENSGT00950000182983.A.a.b.s.b ENSGT00940000158348.e.b.e.a ENSGT00940000157948.D ENSGT00940000157519.b.b ENSGT00940000159620.b.b.h ENSGT00390000011615.A.a ENSGT00950000183157.a.a.a.a #21 ENSGT00950000182960.a.b ##22 ENSGT00940000160116.b #23 ENSGT01090000260240 ENSGT00390000003070.a.a ENSGT00940000156691.ab ENSGT00390000017548.b.a ENSGT00940000161116.w.a.c ENSGT00390000007463 ENSGT00390000004428.a.a ENSGT00390000003595.u.a.a ENSGT00920000149199.f ENSGT00390000003595.u.a.b ENSGT00920000149199.e ENSGT01080000257365.a.c ENSGT01030000234586.B.a.a.b ENSGT00940000157836.a Oncorhynchus ANCESTRAL SPECIES 44 ENSGT00940000170019 ENSGT01050000244894.b.b.d.b ENSGT00950000182935.B.a.d ENSGT00390000012872.a ENSGT01020000230665.a.a.a ENSGT00940000158348.e.b.f.b.a.a ENSGT00940000158348.e.b.f.a.a ENSGT00950000182983.A.a.b.s.a ENSGT00940000158348.e.b.e.a ENSGT00940000157948.D ENSGT00940000157519.b.b ENSGT00940000159620.b.b.g.a.a ENSGT01020000230338.a.b.b.a.a.a.a.d ENSGT00390000011615.A.a ENSGT00950000183157.a.a.a.a.e #21 ENSGT00950000182960.a.b ##22 ENSGT00940000160116.b #23 ENSGT01090000260240 ENSGT00390000003070.a.a ENSGT00940000156691.ab ENSGT00390000017548.b.a ENSGT00940000161116.w.a.c ENSGT00390000007463 ENSGT00390000004428.a.a ENSGT00390000003595.u.a.a ENSGT00920000149199.f ENSGT00920000149199.e ENSGT01080000257365.a.c ENSGT01030000234586.B.a.a.b ENSGT00940000157836.a.f ENSGT00950000182983.A.a.a.a.a Oncorhynchus_a ANCESTRAL SPECIES 212 ENSGT00940000158348.e.b.f.a.b.a.b ENSGT00950000182983.A.a.b.s.a ENSGT00940000158348.e.b.e.a ENSGT00940000157948.D ENSGT00940000157519.b.b ENSGT00940000159620.b.b.g.a.a ENSGT01020000230338.a.b.b.a.a.a.a.d ENSGT00390000011615.A.a ENSGT00950000183157.a.a.a.a.e #21 ENSGT00950000182960.a.b ##22 ENSGT00940000160116.b #23 Coho salmon DUPLICATION Coho salmon MODERN SPECIES 35 TIMP2 (ENSOKIG00005034920) ENSOKIG00005034967 timp2b (ENSOKIG00005034977) TIMP2 (ENSOKIG00005035000) TIMP2 (ENSOKIG00005035008) timp2b (ENSOKIG00005035017) TIMP2 (ENSOKIG00005035050) lgals3bp.2 (ENSOKIG00005035102) cyth1a (ENSOKIG00005035189) socs3a (ENSOKIG00005035503) socs3a (ENSOKIG00005035522) ENSOKIG00005035527 ENSOKIG00005035552 ENSOKIG00005035573 fscn2a (ENSOKIG00005035581) #21 ENSOKIG00005035610 ##22 ENSOKIG00005035675 #23 ENSOKIG00005035713 ENSOKIG00005035722 HID1 (ENSOKIG00005035745) OTOP2 (ENSOKIG00005035957) USH1G (ENSOKIG00005035995) ENSOKIG00005036009 ENSOKIG00005036083 ENSOKIG00005036107 ENSOKIG00005036198 ENSOKIG00005036248 KCNJ2 (ENSOKIG00005036253) ENSOKIG00005036264 MAP2K6 (ENSOKIG00005036285) ENSOKIG00005036536 Coho salmon MODERN SPECIES 225 ENSOKIG00005026176 ##22 BAHCC1 (ENSOKIG00005026161) #23 Rainbow trout DUPLICATION Rainbow trout DUPLICATION Rainbow trout MODERN SPECIES 4 ENSOMYG00000016009 ENSOMYG00000016015 ENSOMYG00000077463 cant1a (ENSOMYG00000016095) ENSOMYG00000016133 timp2b (ENSOMYG00000016064) ENSOMYG00000016057 ENSOMYG00000016160 ENSOMYG00000016181 ENSOMYG00000016121 cyth1a (ENSOMYG00000059020) ENSOMYG00000061506 socs3 (ENSOMYG00000064807) ENSOMYG00000059408 fscn2a (ENSOMYG00000032375) #21 ENSOMYG00000049030 ##22 ENSOMYG00000066980 #23 ENSOMYG00000049037 ENSOMYG00000016270 HID1 (ENSOMYG00000016277) ENSOMYG00000016299 ENSOMYG00000071209 USH1G (ENSOMYG00000007907) ENSOMYG00000007920 fa18b (ENSOMYG00000007985) ENSOMYG00000008078 ENSOMYG00000009464 ENSOMYG00000009520 ENSOMYG00000008366 ENSOMYG00000008392 ENSOMYG00000010150 Rainbow trout MODERN SPECIES 3 ENSOMYG00000016082 timp2b (ENSOMYG00000005077) ENSOMYG00000073761 ENSOMYG00000069838 ENSOMYG00000072126 ENSOMYG00000074762 ENSOMYG00000016051 ENSOMYG00000077431 usp36 (ENSOMYG00000016197) cyth1a (ENSOMYG00000073974) socs3 (ENSOMYG00000050929) ENSOMYG00000032440 ENSOMYG00000032399 fscn2a (ENSOMYG00000032360) #21 ENSOMYG00000032315 ##22 ENSOMYG00000065759 ##22 ENSOMYG00000073291 #23 ENSOMYG00000025750 HID1 (ENSOMYG00000009573) ENSOMYG00000071481 ENSOMYG00000009174 ENSOMYG00000058805 USH1G (ENSOMYG00000009182) ENSOMYG00000066966 ENSOMYG00000009198 ENSOMYG00000031497 zgc:112148 (ENSOMYG00000009293) ENSOMYG00000008019 ENSOMYG00000058753 ENSOMYG00000009352 ENSOMYG00000008312 Rainbow trout MODERN SPECIES 3 cant1a (ENSOMYG00000016111) ENSOMYG00000016082 timp2b (ENSOMYG00000005077) ENSOMYG00000073761 ENSOMYG00000069838 ENSOMYG00000072126 ENSOMYG00000074762 ENSOMYG00000016051 ENSOMYG00000077431 usp36 (ENSOMYG00000016197) cyth1a (ENSOMYG00000073974) socs3 (ENSOMYG00000050929) ENSOMYG00000032440 ENSOMYG00000032399 fscn2a (ENSOMYG00000032360) #21 ENSOMYG00000032315 ##22 ENSOMYG00000065759 ##22 ENSOMYG00000073291 #23 ENSOMYG00000025750 HID1 (ENSOMYG00000009573) ENSOMYG00000071481 ENSOMYG00000009174 ENSOMYG00000058805 USH1G (ENSOMYG00000009182) ENSOMYG00000066966 ENSOMYG00000009198 ENSOMYG00000031497 zgc:112148 (ENSOMYG00000009293) ENSOMYG00000008019 ENSOMYG00000058753 ENSOMYG00000009352 Salmo DUPLICATION Salmo ANCESTRAL SPECIES 101 ENSGT00950000182933.A.a.a.e.a ENSGT00390000002725 ENSGT00940000170019 ENSGT01050000244894.b.b.d.b.d ENSGT00950000182935.B.a.d ENSGT00390000012872.a.a ENSGT01020000230665.a.a.a.e ENSGT00950000182983.A.a.b.s.a ENSGT00940000158348.e.b.f.b.b ENSGT00940000158348.e.b.e.b ENSGT00940000157948.D ENSGT00940000157519.b.b ENSGT00940000159620.b.b.h ENSGT00390000011615.A.a.c ENSGT00950000183157.a.a.a.a #21 ENSGT00950000182960.a.b.k ##22 ENSGT00940000160116.b.d #23 ENSGT01090000260240 ENSGT00390000003070.a.a.f ENSGT00940000156691.ab.b ENSGT00390000017548.b.a.c ENSGT00940000161116.w.a.d ENSGT00390000007463 ENSGT00390000004428.a.a ENSGT00390000003595.u.b ENSGT00390000003595.u.a.b ENSGT00920000149199.e ENSGT01080000257365.a.c.d ENSGT01030000234586.B.a.a.b.e ENSGT00390000015438.a ENSGT01100000263476.E.b.a.a.a.a.b.a.a.d Atlantic salmon DUPLICATION Atlantic salmon MODERN SPECIES 25 notum1a (ENSSSAG00000040092) ENSSSAG00000042449 cant1a (ENSSSAG00000082514) ENSSSAG00000116351 ENSSSAG00000042481 ENSSSAG00000047510 ENSSSAG00000060329 ENSSSAG00000119566 ENSSSAG00000047443 TIMP2 (ENSSSAG00000091339) usp36 (ENSSSAG00000107210) cyth1a (ENSSSAG00000009293) socs3a (ENSSSAG00000092369) ENSSSAG00000116838 fscn2a (ENSSSAG00000003883) #21 ENSSSAG00000121947 ##22 ENSSSAG00000095252 ##22 ENSSSAG00000104408 ENSSSAG00000122242 ENSSSAG00000096120 ENSSSAG00000085786 #23 ENSSSAG00000003142 HID1 (ENSSSAG00000042071) ENSSSAG00000042050 otop2 (ENSSSAG00000109219) USH1G (ENSSSAG00000082647) ENSSSAG00000103248 ENSSSAG00000001763 ENSSSAG00000107412 zgc:112148 (ENSSSAG00000041942) ENSSSAG00000041930 Atlantic salmon MODERN SPECIES 25 ENSSSAG00000042449 cant1a (ENSSSAG00000082514) ENSSSAG00000116351 ENSSSAG00000042481 ENSSSAG00000047510 ENSSSAG00000060329 ENSSSAG00000119566 ENSSSAG00000047443 TIMP2 (ENSSSAG00000091339) usp36 (ENSSSAG00000107210) cyth1a (ENSSSAG00000009293) socs3a (ENSSSAG00000092369) ENSSSAG00000116838 fscn2a (ENSSSAG00000003883) #21 ENSSSAG00000121947 ##22 ENSSSAG00000095252 ##22 ENSSSAG00000104408 ENSSSAG00000122242 ENSSSAG00000096120 ENSSSAG00000085786 #23 ENSSSAG00000003142 HID1 (ENSSSAG00000042071) ENSSSAG00000042050 otop2 (ENSSSAG00000109219) USH1G (ENSSSAG00000082647) ENSSSAG00000103248 ENSSSAG00000001763 ENSSSAG00000107412 zgc:112148 (ENSSSAG00000041942) ENSSSAG00000041930 ENSSSAG00000041920 River trout MODERN SPECIES notum1a (ENSSTUG00000000057) ENSSTUG00000000229 ENSSTUG00000000378 TMC6 (ENSSTUG00000000611) ENSSTUG00000000620 cant1a (ENSSTUG00000000626) ENSSTUG00000000632 timp2b (ENSSTUG00000000639) TIMP2 (ENSSTUG00000000663) ENSSTUG00000000678 timp2b (ENSSTUG00000000684) cyth1a (ENSSTUG00000000698) socs3a (ENSSTUG00000000712) ENSSTUG00000000716 fscn2a (ENSSTUG00000000727) #21 ENSSTUG00000000731 ##22 ENSSTUG00000000734 ENSSTUG00000000737 ENSSTUG00000000743 HID1 (ENSSTUG00000000748) ENSSTUG00000000756 ENSSTUG00000000757 ENSSTUG00000000759 ENSSTUG00000000766 OTOP2 (ENSSTUG00000000769) OTOP2 (ENSSTUG00000000774) USH1G (ENSSTUG00000000795) ENSSTUG00000000798 ENSSTUG00000000801 zgc:112148 (ENSSTUG00000000805) ENSSTUG00000000820 Salmo ANCESTRAL SPECIES 488 ENSGT00950000182960.a.b.l ##22 ENSGT00940000160116.b.c #23 River trout MODERN SPECIES 25 cenpx (ENSSTUG00000044616) ENSSTUG00000044626 ENSSTUG00000044640 cant1a (ENSSTUG00000044651) ENSSTUG00000044668 ENSSTUG00000044697 ENSSTUG00000044709 timp2b (ENSSTUG00000044712) usp36 (ENSSTUG00000044723) cyth1a (ENSSTUG00000044833) ENSSTUG00000045056 socs3a (ENSSTUG00000045060) ENSSTUG00000045063 fscn2a (ENSSTUG00000045071) #21 ENSSTUG00000045082 ENSSTUG00000045086 ##22 ENSSTUG00000045119 #23 ENSSTUG00000045229 ENSSTUG00000045233 ENSSTUG00000045234 HID1 (ENSSTUG00000045243) OTOP2 (ENSSTUG00000045339) ENSSTUG00000045394 USH1G (ENSSTUG00000045396) ENSSTUG00000045398 ENSSTUG00000045404 zgc:112148 (ENSSTUG00000045406) ENSSTUG00000045440 ENSSTUG00000045456 ENSSTUG00000045471 KCNJ2 (ENSSTUG00000045477) Atlantic salmon MODERN SPECIES 22 MYADML2 (ENSSSAG00000097471) notum1a (ENSSSAG00000048313) ENSSSAG00000048415 ENSSSAG00000048435 ENSSSAG00000037277 cant1 (ENSSSAG00000037518) ENSSSAG00000037716 lg3bp (ENSSSAG00000037936) ENSSSAG00000038238 timp2 (ENSSSAG00000087937) usp36 (ENSSSAG00000084680) CYH1 (ENSSSAG00000041174) socs3a (ENSSSAG00000115686) ENSSSAG00000120355 ENSSSAG00000038850 ENSSSAG00000045066 ##22 ENSSSAG00000089680 ENSSSAG00000113801 #23 ENSSSAG00000106576 ENSSSAG00000040911 HID1 (ENSSSAG00000117823) ENSSSAG00000082316 ENSSSAG00000040981 USH1G (ENSSSAG00000120194) ENSSSAG00000091818 zgc:112148 (ENSSSAG00000001739) ENSSSAG00000001716 ENSSSAG00000115070 ENSSSAG00000102728 ENSSSAG00000106158 ENSSSAG00000039423 Northern pike MODERN SPECIES 10 MYADML2 (ENSELUG00000014276) notum1a (ENSELUG00000014258) cenpx (ENSELUG00000014220) ENSELUG00000014190 TMC6 (ENSELUG00000014149) ENSELUG00000014115 ENSELUG00000014099 cant1a (ENSELUG00000014081) lgals3bp.2 (ENSELUG00000014060) timp2b (ENSELUG00000014041) usp36 (ENSELUG00000000510) cyth1a (ENSELUG00000013927) socs3a (ENSELUG00000013848) ENSELUG00000013815 fscn2a (ENSELUG00000013798) #21 ENSELUG00000013788 ##22 BAHCC1 (ENSELUG00000013763) #23 ENSELUG00000013756 HID1 (ENSELUG00000029719) OTOP2 (ENSELUG00000013719) USH1G (ENSELUG00000013709) ENSELUG00000013690 ENSELUG00000013658 zgc:112148 (ENSELUG00000025954) ENSELUG00000013617 ENSELUG00000013605 ENSELUG00000013587 KCNJ2 (ENSELUG00000013572) MAP2K6 (ENSELUG00000013563) BTBD17 (ENSELUG00000013524) ENSELUG00000025793 Acanthomorphata ANCESTRAL SPECIES ENSGT00950000182960.a.b ##22 Euacanthomorphacea ANCESTRAL SPECIES 3 ENSGT00390000014423 ENSGT00940000155412.a.a.b ENSGT00940000154535.B ENSGT00950000183249 ENSGT00940000162394 ENSGT00940000159148.b ENSGT00940000154615.i.a.b ENSGT00950000183047.c.a.b ENSGT00940000154130.a.a.a ENSGT00940000159125 ENSGT00390000001945 ENSGT00640000091578 ENSGT00990000204057 ENSGT00940000164100.A.c.a ENSGT01100000263483.D.d ENSGT00950000182960.a.b ##22 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 ENSGT00390000015109 ENSGT00940000153974.A ENSGT00400000022459 ENSGT00390000010052.b ENSGT00390000013127.b ENSGT00390000009298 ENSGT00930000151032.A.c.a ENSGT00940000167865 ENSGT00940000182552 ENSGT00940000156222.a.b ENSGT00390000002886.a.a.a ENSGT00940000165949 ENSGT00940000173775 Pinecone sodierfish MODERN SPECIES 23 ENSMMDG00005007285 DMTN (ENSMMDG00005007009) ENSMMDG00005007003 mak16 (ENSMMDG00005006998) ENSMMDG00005006995 ENSMMDG00005006829 LRRC2 (ENSMMDG00005006818) srp19 (ENSMMDG00005006811) ENSMMDG00005006807 zgc:101664 (ENSMMDG00005006802) pik3r1 (ENSMMDG00005003259) ENSMMDG00005003157 ENSMMDG00005003154 ENSMMDG00005003148 ENSMMDG00005003143 ENSMMDG00005003135 ##22 ska3 (ENSMMDG00005003126) ENSMMDG00005002975 ENSMMDG00005002963 ENSMMDG00005002958 ENSMMDG00005002953 ENSMMDG00005002948 ENSMMDG00005002944 ENSMMDG00005002931 ENSMMDG00005002927 ENSMMDG00005002923 ENSMMDG00005002916 ENSMMDG00005002909 ENSMMDG00005002906 ENSMMDG00005002902 zgc:158343 (ENSMMDG00005002899) Percomorphaceae ANCESTRAL SPECIES 112 ENSGT00940000154960 ENSGT00940000156081.i ENSGT00950000182925.B.a ENSGT00390000012859 ENSGT00950000182850.a.b.b.a ENSGT00500000044989 ENSGT00390000004950 ENSGT00550000074618.b ENSGT00530000065159 ENSGT00940000155553.e.b ENSGT00940000164100.A.c.a ENSGT01100000263483.D.d ENSGT00950000182960.a.b ##22 ENSGT00950000182960.a.a.a.a ##22 ENSGT00950000182960.a.a.a.b #22 Percomorphaceae_B ANCESTRAL SPECIES 7 ENSGT00940000164100.A.c.a.d.a.b.b ENSGT00940000155852 ENSGT00940000159786 ENSGT00940000155798 ENSGT00940000159470 ENSGT00390000001485 ENSGT00940000177613 ENSGT00940000154779.a.b.b ENSGT00940000154842.a.a ENSGT00940000169174 ENSGT00770000121806.b ENSGT00390000003213 ENSGT00940000166999.A ENSGT01100000263483.D.d.a.a.a.a ENSGT01100000263483.D.d.a.b.b ENSGT00950000182960.a.b ##22 ENSGT00940000164100.A.c.b.b ENSGT01100000263538.A.b.h ENSGT01100000263483.D.d.a.b.a.a.b ENSGT00940000164100.A.c.a.d.a.a.a.b.b.a ENSGT00940000175544 ENSGT00940000165390.b.d ENSGT00940000155553.e.b ENSGT00530000065159 ENSGT00550000074618.b ENSGT00390000004950 ENSGT00500000044989 ENSGT00950000182850.a.b.b.a ENSGT00390000012859 ENSGT00950000182925.B.a ENSGT00940000156081.i Ovalentaria ANCESTRAL SPECIES 87 ENSGT01100000263483.D.d.a.b.a.a.a.b ENSGT00950000182960.a.b ##22 ENSGT00940000164100.A.c.a.d.a.a.a.b.b.a Atherinomorphae ANCESTRAL SPECIES 1 ENSGT00390000002931 ENSGT00940000176961 ENSGT00940000154960 ENSGT00940000156081.i ENSGT00950000182925.B.a ENSGT00390000012859 ENSGT00950000182850.a.b.b.a ENSGT00500000044989 ENSGT00390000004950 ENSGT00550000074618.b ENSGT00530000065159 ENSGT00940000155553.e.b ENSGT00940000177061 ENSGT00940000164100.A.c.b.b.e.b ENSGT01100000263483.D.d.a.a.a.a.f.a.a ENSGT00950000182960.a.b ##22 ENSGT00950000182960.a.a.a.a ##22 ENSGT01100000263483.D.d.a.a.a.a.f.b.b ENSGT00940000166999.A ENSGT00940000169174 ENSGT00940000154842.a.a ENSGT00940000154779.a.b.b ENSGT00390000001485 ENSGT00940000159470 ENSGT00940000155798 ENSGT00940000159786 ENSGT00940000155852 ENSGT00940000164100.A.c.a.d.a.b.b ENSGT00390000009378 ENSGT00390000008748.a ENSGT00940000156980.b Cyprinodontiformes ANCESTRAL SPECIES 88 ENSGT00940000177061 ENSGT00940000164100.A.c.b.b.e.b ENSGT01100000263483.D.d.a.a.a.a.f.a.a.a ENSGT00950000182960.a.b ##22 ENSGT00950000182960.a.a.a.a ##22 ENSGT01100000263483.D.d.a.a.a.a.f.b.b ENSGT00940000166999.A ENSGT00940000169174 Cyprinodontoidei ANCESTRAL SPECIES 289 ENSGT00950000182960.a.b ##22 ENSGT00950000182960.a.a.a.a ##22 Poeciliinae DUPLICATION Poeciliinae ANCESTRAL SPECIES 189 ENSGT00950000182960.a.b.m ##22 ENSGT00950000182960.a.a.a.a ##22 Poecilia ANCESTRAL SPECIES 250 ENSGT00950000182960.a.b.m ##22 ENSGT00950000182960.a.a.a.a ##22 Guppy DUPLICATION Guppy MODERN SPECIES 442 ENSPREG00000005998 MMP11 (ENSPREG00000005982) PPP6C (ENSPREG00000005967) SCAI (ENSPREG00000005929) ENSPREG00000005880 EFNA5 (ENSPREG00000005858) PIGO (ENSPREG00000005809) stoml2 (ENSPREG00000005792) ENSPREG00000005759 ENSPREG00000005616 ENSPREG00000005565 ENSPREG00000005524 ENSPREG00000005507 ##22 ENSPREG00000005501 ##22 ENSPREG00000005473 ENSPREG00000001901 ##22 ENSPREG00000001622 ENSPREG00000001498 gadd45gb.1 (ENSPREG00000001461) ENSPREG00000001446 ENSPREG00000001415 c7b (ENSPREG00000001330) c6 (ENSPREG00000001260) rgs7bpb (ENSPREG00000001248) ENSPREG00000001238 ENSPREG00000001200 vldlr (ENSPREG00000001142) rassf6 (ENSPREG00000001087) ENSPREG00000000908 lpar1 (ENSPREG00000000874) ENSPREG00000000810 Guppy MODERN SPECIES 442 zdhhc12b (ENSPREG00000006134) ENSPREG00000006079 setb (ENSPREG00000006032) ENSPREG00000005998 MMP11 (ENSPREG00000005982) PPP6C (ENSPREG00000005967) SCAI (ENSPREG00000005929) ENSPREG00000005880 EFNA5 (ENSPREG00000005858) PIGO (ENSPREG00000005809) stoml2 (ENSPREG00000005792) ENSPREG00000005759 ENSPREG00000005616 ENSPREG00000005565 ENSPREG00000005524 ENSPREG00000005507 ##22 ENSPREG00000005501 ##22 ENSPREG00000005473 ENSPREG00000001901 ##22 ENSPREG00000001622 ENSPREG00000001498 gadd45gb.1 (ENSPREG00000001461) ENSPREG00000001446 ENSPREG00000001415 c7b (ENSPREG00000001330) c6 (ENSPREG00000001260) rgs7bpb (ENSPREG00000001248) ENSPREG00000001238 ENSPREG00000001200 vldlr (ENSPREG00000001142) rassf6 (ENSPREG00000001087) NAME_6 ANCESTRAL SPECIES ENSGT00950000182960.a.b.m ##22 Sailfin molly MODERN SPECIES 3435 ENSPLAG00000016722 ##22 Poeciliinae ANCESTRAL SPECIES 38 ENSGT00950000182925.B.a ENSGT00390000012859 ENSGT00950000182850.a.b.b.a ENSGT00500000044989 ENSGT00390000004950 ENSGT00550000074618.b ENSGT00530000065159 ENSGT00940000155553.e.b ENSGT00940000153246.b ENSGT00940000160570 ENSGT00940000165390.b.d ENSGT00940000164100.A.c.b.b.e.a.b ENSGT01100000263483.D.d.a.a.a.a.f.a.a.a ENSGT01100000263483.D.d.a.a.a.b.b ENSGT00940000166560 ENSGT00950000182960.a.b.n ##22 ENSGT00940000164100.A.d Poecilia ANCESTRAL SPECIES 35 ENSGT00390000012859 ENSGT00500000044989 ENSGT00390000004950 ENSGT00550000074618.b ENSGT00530000065159 ENSGT00940000155553.e.b ENSGT00940000153246.b ENSGT00940000160570 ENSGT00940000165390.b.d ENSGT00940000164100.A.c.b.b.e.a.b ENSGT00940000164100.A.c.b.b.e.b.b ENSGT01100000263483.D.d.a.a.a.a.f.a.a.a ENSGT00940000164100.A.c.b.b.e.a.a.a.b.a ENSGT01100000263483.D.d.a.a.a.b.b ENSGT00940000166560 ENSGT00950000182960.a.b.n ##22 ENSGT00940000164100.A.d ENSGT00940000166999.A ENSGT00390000003213 ENSGT00940000154842.a.a ENSGT00940000154779.a.b.b ENSGT00390000001485 ENSGT00940000159470 ENSGT00940000155798 ENSGT00940000159786 ENSGT00940000155852 ENSGT00940000164100.A.c.a.d.a.b.b ENSGT00390000009378 ENSGT00390000008748.a ENSGT00760000120401.a.b.a ENSGT00940000156980.b NAME_6 ANCESTRAL SPECIES 143 ENSGT00940000164100.A.c.b.b.e.a.a.a.b.a ENSGT01100000263483.D.d.a.a.a.b.b ENSGT00940000166560 ENSGT00950000182960.a.b.n ##22 ENSGT00940000164100.A.d ENSGT01100000263483.D.d.a.a.a.a.f.a.b ENSGT00940000164100.A.c.b.b.e.b.a ENSGT00770000121806.b ENSGT00390000003213 ENSGT00940000154842.a.a ENSGT00940000154779.a.b.b ENSGT00390000001485 ENSGT00940000159470 ENSGT00940000155798 ENSGT00940000159786 ENSGT00940000155852 ENSGT00940000164100.A.c.a.d.a.b.b ENSGT00390000009378 ENSGT00390000008748.a Amazon molly MODERN SPECIES 570 ENSPFOG00000000217 ENSPFOG00000000220 ENSPFOG00000000243 ##22 ENSPFOG00000000259 ENSPFOG00000000263 ENSPFOG00000020982 ENSPFOG00000022089 zgc:158343 (ENSPFOG00000024488) ENSPFOG00000000283 ENSPFOG00000000395 ENSPFOG00000000448 sncaip (ENSPFOG00000000485) ENSPFOG00000000556 SNX2 (ENSPFOG00000000593) PPIC (ENSPFOG00000000796) PRDM6 (ENSPFOG00000000918) ENSPFOG00000000973 CEP120 (ENSPFOG00000001082) Sailfin molly MODERN SPECIES 168 ENSPLAG00000003507 ENSPLAG00000003502 ENSPLAG00000003494 ENSPLAG00000003479 ##22 ENSPLAG00000003473 ENSPLAG00000003471 ENSPLAG00000000053 ENSPLAG00000003459 zgc:158343 (ENSPLAG00000003456) ENSPLAG00000003448 ENSPLAG00000003413 ENSPLAG00000003391 sncaip (ENSPLAG00000003364) ENSPLAG00000003333 SNX2 (ENSPLAG00000003324) PPIC (ENSPLAG00000003314) PRDM6 (ENSPLAG00000003302) ENSPLAG00000003287 ENSPLAG00000000052 Platyfish MODERN SPECIES 3 ENSXMAG00000015075 ENSXMAG00000000652 DMTN (ENSXMAG00000029276) ENSXMAG00000025608 srp19 (ENSXMAG00000029788) ENSXMAG00000025052 ENSXMAG00000015103 pik3r1 (ENSXMAG00000015104) ENSXMAG00000021944 ENSXMAG00000015148 ENSXMAG00000015158 ENSXMAG00000023783 ENSXMAG00000025223 ENSXMAG00000029634 ENSXMAG00000015170 ENSXMAG00000015179 ##22 ENSXMAG00000026149 ENSXMAG00000027923 ENSXMAG00000029161 ENSXMAG00000019888 ENSXMAG00000015195 ENSXMAG00000015241 sncaip (ENSXMAG00000015244) ENSXMAG00000015263 SNX2 (ENSXMAG00000015264) PPIC (ENSXMAG00000024679) PRDM6 (ENSXMAG00000029393) ENSXMAG00000019889 CEP120 (ENSXMAG00000015326) ZNF608 (ENSXMAG00000010905) ENSXMAG00000021490 NAME_4 ANCESTRAL SPECIES ENSGT00950000182960.a.b ##22 Sheepshead minnow MODERN SPECIES 211 six6a (ENSCVAG00000007558) six1b (ENSCVAG00000007565) six4a (ENSCVAG00000007591) mnat1 (ENSCVAG00000007604) trmt5 (ENSCVAG00000007630) slc38a6 (ENSCVAG00000007643) MFSD2A (ENSCVAG00000007681) ENSCVAG00000007691 ENSCVAG00000007707 ENSCVAG00000007715 ENSCVAG00000007725 ENSCVAG00000007733 ENSCVAG00000007737 ENSCVAG00000007793 ENSCVAG00000007799 ##22 ENSCVAG00000007806 ##22 ENSCVAG00000007827 ENSCVAG00000007898 ENSCVAG00000007906 ENSCVAG00000007919 ENSCVAG00000007929 CCN3 (ENSCVAG00000007933) scgn (ENSCVAG00000008001) CARMIL1 (ENSCVAG00000008107) ENSCVAG00000008140 ADCY2 (ENSCVAG00000008423) TENT4A (ENSCVAG00000008463) ENSCVAG00000008487 ADAMTS16 (ENSCVAG00000008587) irx1a (ENSCVAG00000008606) irx2a (ENSCVAG00000008630) Mummichog DUPLICATION Mummichog MODERN SPECIES 970 ENSFHEG00000003041 ENSFHEG00000003078 ##22 ENSFHEG00000003101 ##22 Mummichog MODERN SPECIES 970 ENSFHEG00000003041 ENSFHEG00000003078 ##22 ENSFHEG00000003101 ##22 Aplocheiloidei ANCESTRAL SPECIES 45 ENSGT00940000176961 ENSGT00940000154960 ENSGT00940000156081.i ENSGT00950000182925.B.a ENSGT00390000012859 ENSGT00950000182850.a.b.b.a ENSGT00500000044989 ENSGT00390000004950 ENSGT00550000074618.b ENSGT00530000065159 ENSGT00940000155553.e.b ENSGT00940000160570 ENSGT00940000165390.b.d ENSGT00940000164100.A.c.b.b.e.a.b ENSGT01100000263483.D.d.a.a.a.a.f.a.a.a ENSGT00950000182960.a.b ##22 ENSGT01100000263483.D.d.a.a.a.a.f.b.b ENSGT00940000166999.A ENSGT00940000169174 ENSGT00940000154842.a.a ENSGT00940000154779.a.b.b ENSGT00390000001485 ENSGT00940000155798 ENSGT00940000159786 ENSGT00940000155852 ENSGT00390000009378 ENSGT00390000008748.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b ENSGT00390000015513.a.a.b.d ENSGT00390000015513.a.b.a Turquoise killifish MODERN SPECIES 1620 ENSNFUG00015005414 SPINA (ENSNFUG00015005491) mak16 (ENSNFUG00015005506) ENSNFUG00015005545 ENSNFUG00015005579 ENSNFUG00015005586 SRP19 (ENSNFUG00015005596) OLA.5773 (ENSNFUG00015005600) ENSNFUG00015005603 pik3r1 (ENSNFUG00015005727) ENSNFUG00015006396 ENSNFUG00015006407 ENSNFUG00015006423 ENSNFUG00015006432 ENSNFUG00015006447 ENSNFUG00015006466 ##22 ENSNFUG00015006513 ENSNFUG00015006522 ENSNFUG00015006525 ENSNFUG00015006529 ENSNFUG00015006542 ENSNFUG00015006586 ENSNFUG00015006598 sncaip (ENSNFUG00015006683) SNX2 (ENSNFUG00015006715) PPIC (ENSNFUG00015006861) PRDM6 (ENSNFUG00015006869) ENSNFUG00015006882 ENSNFUG00015006886 ZNF608 (ENSNFUG00015007020) DAPK1 (ENSNFUG00015007056) Mangrove rivulus MODERN SPECIES 189 ENSKMAG00000010293 ENSKMAG00000010300 PPIC (ENSKMAG00000010312) SNX2 (ENSKMAG00000010366) ENSKMAG00000010469 ENSKMAG00000010488 ENSKMAG00000010501 sncaip (ENSKMAG00000010522) ENSKMAG00000010545 ENSKMAG00000010591 ENSKMAG00000010663 ENSKMAG00000010669 ENSKMAG00000010680 ENSKMAG00000010694 ENSKMAG00000010714 ENSKMAG00000010738 ##22 ENSKMAG00000010779 ENSKMAG00000010796 ##22 ENSKMAG00000010820 ENSKMAG00000010832 ENSKMAG00000010851 ENSKMAG00000010882 ENSKMAG00000010997 ENSKMAG00000011012 ENSKMAG00000011025 ENSKMAG00000011036 pik3r1 (ENSKMAG00000011062) ENSKMAG00000011118 ENSKMAG00000011131 srp19 (ENSKMAG00000011155) ENSKMAG00000011190 Oryzias ANCESTRAL SPECIES 65 ENSGT00950000182960.a.b ##22 ENSGT00940000164100.A.c.b.b.e.b ENSGT00390000017892 ENSGT00940000160028 ENSGT01030000234539.a.a.b.b ENSGT00940000153654.ve.a ENSGT00390000002575 ENSGT00390000015930 ENSGT00440000039046 ENSGT00940000156820.a.a.f ENSGT00940000155305.b.a ENSGT01090000260180 ENSGT00940000158884 ENSGT00940000156516 ENSGT00740000116886 ENSGT00940000160018 Oryzias_a DUPLICATION Oryzias_a DUPLICATION Oryzias_a ANCESTRAL SPECIES ENSGT00950000182960.a.b.q.a ##22 Japanese Medaka HdrR MODERN SPECIES 23 ENSORLG00000028240 ENSORLG00000026499 ENSORLG00000017386 ENSORLG00000024337 ENSORLG00000017404 ENSORLG00000022691 ENSORLG00000030459 ENSORLG00000026710 ENSORLG00000029199 ENSORLG00000027319 ENSORLG00000022843 ENSORLG00000030268 ENSORLG00000024176 ##22 ENSORLG00000017381 ENSORLG00000022360 ENSORLG00000017168 ##22 ENSORLG00000022599 ##22 ENSORLG00000024578 ENSORLG00000024117 ENSORLG00000024673 ENSORLG00000024751 ptar1 (ENSORLG00000020189) arid3c (ENSORLG00000017354) ENSORLG00000023271 pias2 (ENSORLG00000017353) ube2l3b (ENSORLG00000017349) ydjc (ENSORLG00000017345) AK6 (ENSORLG00000017342) rad17 (ENSORLG00000017335) ENSORLG00000017317 HMGCR (ENSORLG00000017313) Chinese medaka MODERN SPECIES 1496 ENSOSIG00000011766 ##22 Oryzias_a DUPLICATION Oryzias_a ANCESTRAL SPECIES ENSGT00950000182960.a.b.q.b.a ##22 Japanese Medaka HdrR MODERN SPECIES 23 ENSORLG00000017067 GRAMD2B (ENSORLG00000030238) ZNF608 (ENSORLG00000017076) CEP120 (ENSORLG00000017086) PRDM6 (ENSORLG00000017089) ENSORLG00000017091 PPIC (ENSORLG00000017098) ENSORLG00000030629 SNX2 (ENSORLG00000017116) ENSORLG00000021985 ENSORLG00000024023 sncaip (ENSORLG00000017129) ENSORLG00000017135 ENSORLG00000024584 ENSORLG00000017164 ENSORLG00000023109 ##22 ENSORLG00000025924 ENSORLG00000023906 ENSORLG00000021804 ENSORLG00000030557 ENSORLG00000027254 ENSORLG00000025293 ENSORLG00000027556 chek2 (ENSORLG00000024606) gstt2 (ENSORLG00000020134) ENSORLG00000029822 ENSORLG00000027297 ENSORLG00000017193 ENSORLG00000017197 ENSORLG00000022278 ENSORLG00000027591 Chinese medaka MODERN SPECIES 2034 ENSOSIG00000002075 ##22 Oryzias_a ANCESTRAL SPECIES ENSGT00950000182960.a.b.q.b.b ##22 Japanese Medaka HdrR MODERN SPECIES 23 ENSORLG00000026499 ENSORLG00000017386 ENSORLG00000024337 ENSORLG00000017404 ENSORLG00000022691 ENSORLG00000030459 ENSORLG00000026710 ENSORLG00000029199 ENSORLG00000027319 ENSORLG00000022843 ENSORLG00000030268 ENSORLG00000024176 ##22 ENSORLG00000017381 ENSORLG00000022360 ENSORLG00000017168 ##22 ENSORLG00000022599 ##22 ENSORLG00000024578 ENSORLG00000024117 ENSORLG00000024673 ENSORLG00000024751 ptar1 (ENSORLG00000020189) arid3c (ENSORLG00000017354) ENSORLG00000023271 pias2 (ENSORLG00000017353) ube2l3b (ENSORLG00000017349) ydjc (ENSORLG00000017345) AK6 (ENSORLG00000017342) rad17 (ENSORLG00000017335) ENSORLG00000017317 HMGCR (ENSORLG00000017313) ENSORLG00000023660 Oryzias_a ANCESTRAL SPECIES 69 ENSGT00950000182960.a.b.r ##22 ENSGT00940000164100.A.c.b.b.e.b ENSGT00390000017892 ENSGT00940000160028 ENSGT01030000234539.a.a.b.b ENSGT00940000153654.ve.a ENSGT00390000002575 ENSGT00390000015930 ENSGT00440000039046 ENSGT00940000156820.a.a.f ENSGT00940000155305.b.a ENSGT01090000260180 ENSGT00940000158884 ENSGT00940000156516 ENSGT00940000160018 ENSGT00940000155771.d Japanese Medaka HdrR MODERN SPECIES 23 ENSORLG00000030560 ENSORLG00000025800 ENSORLG00000017410 ENSORLG00000028240 ENSORLG00000026499 ENSORLG00000017386 ENSORLG00000024337 ENSORLG00000017404 ENSORLG00000022691 ENSORLG00000030459 ENSORLG00000026710 ENSORLG00000029199 ENSORLG00000027319 ENSORLG00000022843 ENSORLG00000030268 ENSORLG00000024176 ##22 ENSORLG00000017381 ENSORLG00000022360 ENSORLG00000017168 ##22 ENSORLG00000022599 ##22 ENSORLG00000024578 ENSORLG00000024117 ENSORLG00000024673 ENSORLG00000024751 ptar1 (ENSORLG00000020189) arid3c (ENSORLG00000017354) ENSORLG00000023271 pias2 (ENSORLG00000017353) ube2l3b (ENSORLG00000017349) ydjc (ENSORLG00000017345) AK6 (ENSORLG00000017342) Oryzias_b ANCESTRAL SPECIES 134 ENSGT00940000166257.w.b ENSGT00950000182960.a.b ##22 ENSGT00940000162660.b.a.h.f ENSGT00940000162660.b.a.h.e ENSGT01100000263483.D.d.a.a.a.a.f.a.a ENSGT00940000164100.A.c.b.b.e.b.c Javanese ricefish MODERN SPECIES 23 ENSOJAG00000007998 ENSOJAG00000008010 fam151b (ENSOJAG00000008016) ankrd34bb (ENSOJAG00000008041) dhfr (ENSOJAG00000008068) gtf2h2 (ENSOJAG00000008085) oclnb (ENSOJAG00000008123) marveld2b (ENSOJAG00000008136) sdf2l1 (ENSOJAG00000008147) ENSOJAG00000008154 TOP3B (ENSOJAG00000008174) ENSOJAG00000008671 ENSOJAG00000008683 ENSOJAG00000008731 ENSOJAG00000008843 ENSOJAG00000008866 ##22 ENSOJAG00000008957 ENSOJAG00000009351 ENSOJAG00000009426 ENSOJAG00000009443 ptar1 (ENSOJAG00000009452) arid3c (ENSOJAG00000009467) pias2 (ENSOJAG00000009574) ydjc (ENSOJAG00000009772) AK6 (ENSOJAG00000009779) rad17 (ENSOJAG00000009794) ENSOJAG00000009817 HMGCR (ENSOJAG00000010070) ENSOJAG00000005817 ppm1f (ENSOJAG00000005844) ENSOJAG00000005863 Indian medaka DUPLICATION Indian medaka MODERN SPECIES 56 ENSOMEG00000013849 ENSOMEG00000013832 ##22 ENSOMEG00000013751 ##22 ENSOMEG00000013741 ENSOMEG00000013715 ENSOMEG00000013611 ENSOMEG00000013595 Indian medaka MODERN SPECIES 56 ENSOMEG00000013849 ENSOMEG00000013832 ##22 ENSOMEG00000013751 ##22 ENSOMEG00000013741 ENSOMEG00000013715 ENSOMEG00000013611 ENSOMEG00000013595 Ovalentaria_B ANCESTRAL SPECIES 118 ENSGT01100000263483.D.d.a.b.a.a.a.b ENSGT00950000182960.a.b ##22 ENSGT00940000164100.A.c.a.d.a.a.a.b.b.a Pomacentridae ANCESTRAL SPECIES 26 ENSGT00980000198657 ENSGT00940000177260 ENSGT00390000002931 ENSGT00940000176961 ENSGT00940000154960 ENSGT00940000156081.i ENSGT00950000182925.B.a ENSGT00390000012859 ENSGT00950000182850.a.b.b.a ENSGT00500000044989 ENSGT00390000004950 ENSGT00550000074618.b ENSGT00530000065159 ENSGT00940000155553.e.b ENSGT00940000165390.b.d ENSGT00950000182960.a.b ##22 ENSGT00940000164100.A.c.a.d.a.a.a.b.b.a ENSGT00940000169174 ENSGT00940000154842.a.a ENSGT00940000154779.a.b.b ENSGT00390000001485 ENSGT00940000159470 ENSGT00940000155798 ENSGT00940000159786 ENSGT01100000263483.D.c.b.b.a ENSGT00940000164100.A.c.a.d.a.b.b.v ENSGT00940000155852 ENSGT00390000009378 ENSGT00390000008748.a ENSGT00940000156980.b ENSGT00940000171252 Pomacentridae_A ANCESTRAL SPECIES 34 ENSGT00980000198657 ENSGT00940000177260 ENSGT00390000002931 ENSGT00940000176961 ENSGT00940000154960 ENSGT00940000156081.i ENSGT00950000182925.B.a ENSGT00390000012859 ENSGT00950000182850.a.b.b.a ENSGT00500000044989 ENSGT00390000004950 ENSGT00550000074618.b ENSGT00530000065159 ENSGT00940000155553.e.b ENSGT00940000165390.b.d ENSGT00950000182960.a.b ##22 ENSGT00940000164100.A.c.a.d.a.a.a.b.b.a ENSGT00390000003213 ENSGT00940000154842.a.a ENSGT00940000154779.a.b.b ENSGT00390000001485 ENSGT00940000159470 ENSGT00940000155798 ENSGT00940000159786 ENSGT00940000155852 ENSGT00390000009378 ENSGT00390000008748.a ENSGT00940000156980.b ENSGT00940000171252 ENSGT00940000155742.a.b ENSGT00940000157592 Amphiprion ANCESTRAL SPECIES 40 ENSGT00940000177260 ENSGT00390000002931 ENSGT00940000176961 ENSGT00940000154960 ENSGT00940000156081.i ENSGT00950000182925.B.a ENSGT00390000012859 ENSGT00950000182850.a.b.b.a ENSGT00500000044989 ENSGT00390000004950 ENSGT00550000074618.b ENSGT00530000065159 ENSGT00940000155553.e.b ENSGT00940000165390.b.d.db ENSGT00940000154311.a.b.db.f ENSGT00950000182960.a.b ##22 ENSGT00940000164100.A.c.a.d.a.a.a.b.b.a ENSGT00390000003213 ENSGT00940000154842.a.a ENSGT00940000154779.a.b.b ENSGT00390000001485 ENSGT00940000159470 ENSGT00940000155798 ENSGT00940000159786 ENSGT00940000155852 ENSGT00390000009378 ENSGT00390000008748.a ENSGT00940000156980.b ENSGT00940000171252 ENSGT00940000155742.a.b ENSGT00940000157592 Orange clownfish DUPLICATION Orange clownfish MODERN SPECIES 19 ENSAPEG00000022330 ENSAPEG00000022310 ENSAPEG00000022293 ENSAPEG00000022264 mak16 (ENSAPEG00000022237) ENSAPEG00000022217 ENSAPEG00000022196 ENSAPEG00000022180 srp19 (ENSAPEG00000022170) ENSAPEG00000022146 ENSAPEG00000022131 pik3r1 (ENSAPEG00000022087) ENSAPEG00000022069 DMTN (ENSAPEG00000022035) ENSAPEG00000022026 ENSAPEG00000022005 ##22 ENSAPEG00000021999 ENSAPEG00000021964 ##22 ENSAPEG00000021942 ENSAPEG00000021929 ENSAPEG00000021924 ENSAPEG00000021870 ENSAPEG00000021855 sncaip (ENSAPEG00000021842) ENSAPEG00000021836 SNX2 (ENSAPEG00000021798) PPIC (ENSAPEG00000021728) ENSAPEG00000021653 ENSAPEG00000021634 PRDM6 (ENSAPEG00000021606) CEP120 (ENSAPEG00000021587) Orange clownfish MODERN SPECIES 19 ENSAPEG00000022293 ENSAPEG00000022264 mak16 (ENSAPEG00000022237) ENSAPEG00000022217 ENSAPEG00000022196 ENSAPEG00000022180 srp19 (ENSAPEG00000022170) ENSAPEG00000022146 ENSAPEG00000022131 pik3r1 (ENSAPEG00000022087) ENSAPEG00000022069 DMTN (ENSAPEG00000022035) ENSAPEG00000022026 ENSAPEG00000022005 ##22 ENSAPEG00000021999 ENSAPEG00000021964 ##22 ENSAPEG00000021942 ENSAPEG00000021929 ENSAPEG00000021924 ENSAPEG00000021870 ENSAPEG00000021855 sncaip (ENSAPEG00000021842) ENSAPEG00000021836 SNX2 (ENSAPEG00000021798) PPIC (ENSAPEG00000021728) ENSAPEG00000021653 ENSAPEG00000021634 PRDM6 (ENSAPEG00000021606) CEP120 (ENSAPEG00000021587) ZNF608 (ENSAPEG00000021515) GRAMD2B (ENSAPEG00000021469) Clown anemonefish MODERN SPECIES 429 ENSAOCG00000000829 ENSAOCG00000013143 ##22 ENSAOCG00000013114 Cichlidae ANCESTRAL SPECIES 397 ENSGT01100000263483.D.d.a.b.a.a.a.b ENSGT00950000182960.a.b ##22 Midas cichlid MODERN SPECIES 144 ENSACIG00000012776 ##22 ENSACIG00000012766 ENSACIG00000012761 ENSACIG00000012748 ENSACIG00000012718 ENSACIG00000012707 ENSACIG00000012695 ABCA2 (ENSACIG00000012572) ydjc (ENSACIG00000012537) zgc:86811 (ENSACIG00000012520) rad17 (ENSACIG00000012476) ccdc125 (ENSACIG00000012419) isl1a (ENSACIG00000012395) si:dkey-3h3.3 (ENSACIG00000012380) golph3a (ENSACIG00000012360) Pseudocrenilabrinae ANCESTRAL SPECIES 474 ENSGT01100000263483.D.d.a.b.a.a.a.b ENSGT00950000182960.a.b ##22 Pseudocrenilabrinae_A ANCESTRAL SPECIES 192 ENSGT01100000263483.D.d.a.b.a.a.a.b.a.a ENSGT00950000182960.a.b ##22 ENSGT00940000162660.b.a.g.b.k.a.b Haplochromini ANCESTRAL SPECIES 107 ENSGT00940000165390.b.d.fb.a.b.c.a ENSGT00940000175544 ENSGT00940000162660.b.a.g.b.k.b ENSGT01100000263483.D.d.a.b.a.a.a.b.a.a.a ENSGT00950000182960.a.b ##22 ENSGT00940000162660.b.a.g.b.k.a.b ENSGT00940000164100.A.c.a.d.a.a.a.b.b.b.a Burton s mouthbrooder MODERN SPECIES 933 ENSHBUG00000006984 ENSHBUG00000006977 ENSHBUG00000006954 ENSHBUG00000006941 ##22 ENSHBUG00000006928 ENSHBUG00000006913 ENSHBUG00000006909 Haplochromini_A ANCESTRAL SPECIES 118 ENSGT00940000165390.b.d.fb.a.b.c.a ENSGT00940000175544 ENSGT00940000162660.b.a.g.b.k.b ENSGT00950000182960.a.b ##22 ENSGT00940000162660.b.a.g.b.k.a.b ENSGT00940000164100.A.c.b.a.a.a.a.a.a.a ENSGT00940000177061.h P. nyererei DUPLICATION P. nyererei MODERN SPECIES 929 ENSPNYG00000007062 ##22 ENSPNYG00000007049 P. nyererei MODERN SPECIES 777 ENSPNYG00000004371 ENSPNYG00000004333 ##22 ENSPNYG00000004236 ENSPNYG00000004195 ENSPNYG00000004179 ENSPNYG00000004166 ENSPNYG00000004146 ENSPNYG00000004123 ENSPNYG00000004077 Haplochromini_B ANCESTRAL SPECIES 134 ENSGT00950000182960.a.b ##22 ENSGT00940000162660.b.a.g.b.k.a.b ENSGT00940000164100.A.c.a.d.a.a.a.b.b.b.a ENSGT00940000177061.g.b ENSGT00940000163484.t.b.b.a.b.a.d.d ENSGT00940000163484.t.b.b.a.b.a.c.a ENSGT00940000163484.t.b.b.a.b.a.c.b Zebra mbuna MODERN SPECIES 238 ENSMZEG00005014253 ##22 ENSMZEG00005014242 ENSMZEG00005014235 ENSMZEG00005014230 ENSMZEG00005014224 ENSMZEG00005014219 ENSMZEG00005014210 ENSMZEG00005014204 GZMK (ENSMZEG00005014194) ENSMZEG00005014186 Eastern happy MODERN SPECIES 3 ENSACLG00000005652 ENSACLG00000005638 ENSACLG00000005627 ENSACLG00000005625 ENSACLG00000005600 ENSACLG00000005592 ENSACLG00000005585 ENSACLG00000005582 ENSACLG00000005542 ENSACLG00000005319 ENSACLG00000005308 ENSACLG00000005300 ENSACLG00000005264 ENSACLG00000005232 ENSACLG00000005220 ENSACLG00000005175 ##22 ENSACLG00000005094 ENSACLG00000005080 ENSACLG00000005066 ENSACLG00000005063 ENSACLG00000005057 ENSACLG00000005052 ENSACLG00000005015 ENSACLG00000005005 ENSACLG00000004981 ENSACLG00000004980 dapk1 (ENSACLG00000004772) ctsla (ENSACLG00000004751) fbp2 (ENSACLG00000004707) fbp1a (ENSACLG00000004679) ENSACLG00000004550 Lyretail cichlid MODERN SPECIES 524 ENSNBRG00000006403 ENSNBRG00000006249 ENSNBRG00000006217 ENSNBRG00000006210 ENSNBRG00000006200 ENSNBRG00000006189 ENSNBRG00000006173 ##22 ENSNBRG00000005990 ENSNBRG00000005951 ENSNBRG00000005944 ENSNBRG00000005934 ENSNBRG00000005916 ENSNBRG00000005903 ENSNBRG00000005852 Percomorphaceae_C ANCESTRAL SPECIES 49 ENSGT00940000164100.A.c.a.d.a.a.a.b.b.b.b ENSGT01100000263483.D.d.a.b.b ENSGT00950000182960.a.b ##22 ENSGT00940000164100.A.c.a.d.a.a.a.b.b.a Eupercaria ANCESTRAL SPECIES 114 ENSGT00950000182960.a.b ##22 ENSGT00940000164100.A.c.a.d.a.a.a.b.b.a Tetraodontidae ANCESTRAL SPECIES 24 ENSGT00940000156837 ENSGT00610000087474 ENSGT00980000198657 ENSGT00390000002931 ENSGT00940000154960 ENSGT00940000156081.i ENSGT00950000182925.B.a ENSGT00390000012859 ENSGT00950000182850.a.b.b.a ENSGT00500000044989 ENSGT00390000004950 ENSGT00550000074618.b ENSGT00530000065159 ENSGT00940000155553.e.b ENSGT00940000165390.b.d ENSGT00950000182960.a.b ##22 ENSGT00940000156161.B ENSGT00390000015494 ENSGT00730000111371 ENSGT00940000160325.b ENSGT00390000004149 ENSGT00940000153745.a.a ENSGT00940000165233 ENSGT00940000157488.g ENSGT00940000153974.B ENSGT00940000164419 ENSGT00940000155431.a ENSGT00950000183012.A.a.c.b ENSGT00940000166302 ENSGT00940000156716 ENSGT00390000003458 Tetraodon MODERN SPECIES 3 ENSTNIG00000005853 ZMIZ2 (ENSTNIG00000005854) OGDH (ENSTNIG00000005855) ENSTNIG00000005856 adam9 (ENSTNIG00000005857) ercc6l (ENSTNIG00000001002) ENSTNIG00000018884 ENSTNIG00000018883 ENSTNIG00000001834 mak16 (ENSTNIG00000018882) ENSTNIG00000018881 srp19 (ENSTNIG00000018880) ENSTNIG00000018879 pik3r1 (ENSTNIG00000018878) ENSTNIG00000018877 ENSTNIG00000018876 ##22 tnksb (ENSTNIG00000018875) IDUA (ENSTNIG00000018874) ENSTNIG00000018873 ENSTNIG00000000123 DNAH2 (ENSTNIG00000018872) ncaph (ENSTNIG00000018871) TACR1 (ENSTNIG00000018870) zgc:110329 (ENSTNIG00000018869) SLC4A5 (ENSTNIG00000018868) ogfod2 (ENSTNIG00000018867) zgc:113436 (ENSTNIG00000000394) abcb9 (ENSTNIG00000018866) vps37ba (ENSTNIG00000000344) ppp3cca (ENSTNIG00000018865) adam28 (ENSTNIG00000018864) Fugu MODERN SPECIES 13 ENSTRUG00000011912 MFSD14B (ENSTRUG00000011803) ENSTRUG00000011666 mak16 (ENSTRUG00000011544) ENSTRUG00000011399 ENSTRUG00000025700 ENSTRUG00000023223 ENSTRUG00000023119 srp19 (ENSTRUG00000033163) ENSTRUG00000011169 ENSTRUG00000033074 pik3r1 (ENSTRUG00000010930) ENSTRUG00000003423 ENSTRUG00000028752 ENSTRUG00000030130 actbc (ENSTRUG00000004099) ##22 tnksb (ENSTRUG00000010518) IDUA (ENSTRUG00000010281) ENSTRUG00000022284 vamp5 (ENSTRUG00000025146) vamp8 (ENSTRUG00000028330) ncaph (ENSTRUG00000009464) tacr1 (ENSTRUG00000009160) zgc:110329 (ENSTRUG00000009014) SLC4A5 (ENSTRUG00000007729) ogfod2 (ENSTRUG00000007634) zgc:113436 (ENSTRUG00000007593) abcb9 (ENSTRUG00000007111) vps37ba (ENSTRUG00000021045) ppp3cca (ENSTRUG00000006318) adam28 (ENSTRUG00000005293) Eupecaria_A ANCESTRAL SPECIES 121 ENSGT00950000182960.a.b ##22 ENSGT00940000164100.A.c.a.d.a.a.a.b.b.a Eupecaria_B ANCESTRAL SPECIES 48 ENSGT00950000182960.a.b ##22 ENSGT00940000164100.A.c.b.b ENSGT01100000263538.A.b.h.c.a ENSGT01100000263483.D.d.a.b.a.a.b ENSGT00940000164100.A.c.a.d.a.a.a.b.b.b.b Perciformes ANCESTRAL SPECIES 88 ENSGT00950000182960.a.b ##22 ENSGT00940000164100.A.c.a.d.a.a.a.b.b.a ENSGT00940000164100.A.c.b.b Perciformes_a ANCESTRAL SPECIES 187 ENSGT00950000182960.a.b ##22 ENSGT00940000164100.A.c.a.d.a.a.a.b.b.a ENSGT00940000164100.A.c.b.b Pike perch MODERN SPECIES 23 nudt18 (ENSSLUG00000001908) ENSSLUG00000001921 ENSSLUG00000001957 ENSSLUG00000002019 mak16 (ENSSLUG00000002029) ENSSLUG00000002044 ENSSLUG00000002059 srp19 (ENSSLUG00000002070) ENSSLUG00000002084 zgc:101664 (ENSSLUG00000002095) pik3r1 (ENSSLUG00000002124) ENSSLUG00000002215 ENSSLUG00000002228 ENSSLUG00000002235 ENSSLUG00000002241 ENSSLUG00000002245 ##22 ENSSLUG00000002254 ENSSLUG00000002260 ENSSLUG00000002264 ENSSLUG00000002270 ENSSLUG00000002273 ENSSLUG00000002278 ENSSLUG00000002290 MCTP1 (ENSSLUG00000002402) ENSSLUG00000003893 ENSSLUG00000003914 fam172a (ENSSLUG00000003942) nr2f1a (ENSSLUG00000003995) ENSSLUG00000004033 ENSSLUG00000004038 ENSSLUG00000004047 Cottioidei ANCESTRAL SPECIES 27 ENSGT00940000156837 ENSGT00390000004950 ENSGT00500000044989 ENSGT00950000182850.a.b.b.a ENSGT00390000012859 ENSGT00950000182925.B.a ENSGT00940000156081.i ENSGT00940000154960 ENSGT00390000002931 ENSGT00980000198657 ENSGT00610000087474 ENSGT00550000074618.b ENSGT00530000065159 ENSGT00940000155553.e.b ENSGT00940000165390.b.d ENSGT00950000182960.a.b ##22 ENSGT00940000164100.A.c.b.b ENSGT00940000166999.A ENSGT00940000169174 ENSGT00940000154842.a.a ENSGT00940000154779.a.b.b ENSGT00940000177613 ENSGT00390000001485 ENSGT00940000159470 ENSGT00940000155798 ENSGT00940000159786 ENSGT00940000155852 ENSGT00940000164100.A.c.a.d.a.b.b ENSGT00390000009378 ENSGT00390000008748.a ENSGT00940000156980.b Stickleback DUPLICATION Stickleback DUPLICATION Stickleback DUPLICATION Stickleback MODERN SPECIES 377 ENSGACG00000000352 ##22 ENSGACG00000000326 ##22 ENSGACG00000000323 Stickleback MODERN SPECIES 240 ENSGACG00000001330 ##22 ENSGACG00000001357 ##22 ENSGACG00000001364 Stickleback MODERN SPECIES 377 ENSGACG00000000352 ##22 ENSGACG00000000326 ##22 ENSGACG00000000323 Stickleback MODERN SPECIES 240 ENSGACG00000001330 ##22 ENSGACG00000001357 ##22 ENSGACG00000001364 Lumpfish DUPLICATION Lumpfish MODERN SPECIES 24 mak16 (ENSCLMG00005006936) ENSCLMG00005006944 ENSCLMG00005006973 ENSCLMG00005008815 ENSCLMG00005008818 nudt18 (ENSCLMG00005008819) ENSCLMG00005008821 si:ch211-191j22.3 (ENSCLMG00005008822) ENSCLMG00005008824 ENSCLMG00005008828 ENSCLMG00005008830 PIK3R1 (ENSCLMG00005008845) ENSCLMG00005010400 ENSCLMG00005010434 ENSCLMG00005010436 ENSCLMG00005010440 ##22 ENSCLMG00005010443 ##22 ENSCLMG00005010451 ENSCLMG00005010452 ENSCLMG00005010454 ENSCLMG00005010455 ENSCLMG00005010461 ENSCLMG00005010473 ENSCLMG00005010484 sncaip (ENSCLMG00005004240) ENSCLMG00005004243 SNX2 (ENSCLMG00005004349) ENSCLMG00005006147 ENSCLMG00005006150 PPIC (ENSCLMG00005006204) PRDM6 (ENSCLMG00005006265) Lumpfish MODERN SPECIES 24 ENSCLMG00005006944 ENSCLMG00005006973 ENSCLMG00005008815 ENSCLMG00005008818 nudt18 (ENSCLMG00005008819) ENSCLMG00005008821 si:ch211-191j22.3 (ENSCLMG00005008822) ENSCLMG00005008824 ENSCLMG00005008828 ENSCLMG00005008830 PIK3R1 (ENSCLMG00005008845) ENSCLMG00005010400 ENSCLMG00005010434 ENSCLMG00005010436 ENSCLMG00005010440 ##22 ENSCLMG00005010443 ##22 ENSCLMG00005010451 ENSCLMG00005010452 ENSCLMG00005010454 ENSCLMG00005010455 ENSCLMG00005010461 ENSCLMG00005010473 ENSCLMG00005010484 sncaip (ENSCLMG00005004240) ENSCLMG00005004243 SNX2 (ENSCLMG00005004349) ENSCLMG00005006147 ENSCLMG00005006150 PPIC (ENSCLMG00005006204) PRDM6 (ENSCLMG00005006265) ENSCLMG00005006267 Eupecaria_C ANCESTRAL SPECIES 3 ENSGT00390000014595.b.b ENSGT00390000012331 ENSGT00390000001731 ENSGT00940000154184.A ENSGT00940000158425.a ENSGT00940000160048 ENSGT00390000001041 ENSGT00940000158897.e.a ENSGT00940000160552 ENSGT01030000234578.A.b.a.a.b ENSGT00940000157438.c ENSGT01000000215531 ENSGT00510000047107.B.d ENSGT00390000015494 ENSGT00940000156161.B ENSGT00950000182960.a.b ##22 ENSGT00940000164100.A.c.b.b ENSGT00940000165390.b.d ENSGT00940000155553.e.b ENSGT00530000065159 ENSGT00550000074618.b ENSGT00390000004950 ENSGT00500000044989 ENSGT00950000182850.a.b.b.a ENSGT00390000012859 ENSGT00950000182925.B.a ENSGT00940000156081.i ENSGT00940000154960 ENSGT00940000176961 ENSGT00390000002931 ENSGT01080000257533 Eupercaria_incertae_sedis ANCESTRAL SPECIES 28 ENSGT00950000182960.a.b ##22 ENSGT00940000164100.A.c.b.b ENSGT00940000156161.B ENSGT00390000015494 ENSGT00510000047107.B.d ENSGT01000000215531 ENSGT00940000157438.c ENSGT01030000234578.A.b.a.a.b ENSGT00940000160552 ENSGT00940000158897.e.a ENSGT00390000001041 ENSGT00940000160048 ENSGT00940000158425.a ENSGT00940000154184.A ENSGT00390000001731 ENSGT00390000012331 European seabass MODERN SPECIES 13 UNG (ENSDLAG00005033372) ALKBH2 (ENSDLAG00005030401) ENSDLAG00005031016 ENSDLAG00005031343 ENSDLAG00005035060 ENSDLAG00005031691 ENSDLAG00005015725 ENSDLAG00005030020 ENSDLAG00005031494 ENSDLAG00005026786 ENSDLAG00005031726 ENSDLAG00005034226 ENSDLAG00005026736 ENSDLAG00005006453 ENSDLAG00005012613 ENSDLAG00005011240 ##22 ENSDLAG00005020194 ENSDLAG00005002465 ENSDLAG00005004913 ENSDLAG00005021307 ENSDLAG00005031209 ENSDLAG00005033234 ENSDLAG00005009263 tnksb (ENSDLAG00005009305) ENSDLAG00005010869 ENSDLAG00005010968 atp5meb (ENSDLAG00005030491) kcnv2b (ENSDLAG00005010981) ENSDLAG00005027518 ENSDLAG00005031235 ENSDLAG00005010997 Large yellow croaker MODERN SPECIES 2 msi1b (ENSLCRG00005006079) ENSLCRG00005006075 ENSLCRG00005006074 kcnv2b (ENSLCRG00005006073) tmem150aa (ENSLCRG00005006072) rnf181 (ENSLCRG00005006071) ENSLCRG00005005902 ctu1 (ENSLCRG00005005898) CTU1 (ENSLCRG00005005894) crybb2 (ENSLCRG00005005891) CRYBB3 (ENSLCRG00005005889) ENSLCRG00005005886 rnf10 (ENSLCRG00005005881) ENSLCRG00005005880 ENSLCRG00005005877 ENSLCRG00005005830 ##22 ENSLCRG00005005829 tnksb (ENSLCRG00005005703) IDUA (ENSLCRG00005005588) rbp4l (ENSLCRG00005005581) ENSLCRG00005005578 ENSLCRG00005005577 unc119.1 (ENSLCRG00005005575) pop5 (ENSLCRG00005005573) ENSLCRG00005005572 ENSLCRG00005005570 ABCA2 (ENSLCRG00005005551) FUT7 (ENSLCRG00005005542) ENSLCRG00005005539 niban2b (ENSLCRG00005005491) stxbp1b (ENSLCRG00005002181) Gilthead seabream DUPLICATION Gilthead seabream MODERN SPECIES 19 IDUA (ENSSAUG00010005616) tnksb (ENSSAUG00010005654) ENSSAUG00010005692 ENSSAUG00010005694 ENSSAUG00010005696 ENSSAUG00010005697 ENSSAUG00010005699 ENSSAUG00010005701 ENSSAUG00010005704 ENSSAUG00010005709 ##22 ENSSAUG00010005723 ENSSAUG00010005725 ENSSAUG00010005739 ENSSAUG00010005749 ENSSAUG00010005751 ENSSAUG00010005755 ##22 ENSSAUG00010005760 ENSSAUG00010005762 ENSSAUG00010005765 pik3r1 (ENSSAUG00010005793) ENSSAUG00010006777 ENSSAUG00010006780 srp19 (ENSSAUG00010006797) ENSSAUG00010006802 ENSSAUG00010006812 mak16 (ENSSAUG00010006818) ENSSAUG00010006831 ENSSAUG00010006835 ENSSAUG00010006842 ENSSAUG00010007194 ENSSAUG00010007196 Gilthead seabream MODERN SPECIES 19 ENSSAUG00010005588 rnf181 (ENSSAUG00010005591) tmem150aa (ENSSAUG00010005596) kcnv2b (ENSSAUG00010005599) ATP5I (ENSSAUG00010005603) rbp4l (ENSSAUG00010005607) IDUA (ENSSAUG00010005616) tnksb (ENSSAUG00010005654) ENSSAUG00010005692 ENSSAUG00010005694 ENSSAUG00010005696 ENSSAUG00010005697 ENSSAUG00010005699 ENSSAUG00010005701 ENSSAUG00010005704 ENSSAUG00010005709 ##22 ENSSAUG00010005723 ENSSAUG00010005725 ENSSAUG00010005739 ENSSAUG00010005749 ENSSAUG00010005751 ENSSAUG00010005755 ##22 ENSSAUG00010005760 ENSSAUG00010005762 ENSSAUG00010005765 pik3r1 (ENSSAUG00010005793) ENSSAUG00010006777 ENSSAUG00010006780 srp19 (ENSSAUG00010006797) ENSSAUG00010006802 ENSSAUG00010006812 Percomorphaceae_D ANCESTRAL SPECIES 37 ENSGT00940000177061 ENSGT00940000164100.A.c.b.b ENSGT01100000263483.D.d.a.b.b ENSGT00950000182960.a.b ##22 ENSGT00940000164100.A.c.a.d.a.a.a.b.b.a ENSGT01100000263483.D.d.a.b.a.a.a.a.b ENSGT00940000164100.A.c.a.d.a.a.b ENSGT00940000166999.A ENSGT00940000169174 Carangaria ANCESTRAL SPECIES 46 ENSGT00940000177061 ENSGT00940000164100.A.c.b.b ENSGT01100000263483.D.d.a.b.b ENSGT00950000182960.a.b ##22 ENSGT00940000164100.A.c.a.d.a.a.a.b.b.a ENSGT01100000263483.D.c.b.b.b ENSGT00940000164100.A.c.a.c Pleuronectoidei ANCESTRAL SPECIES 127 ENSGT01100000263483.D.c.b.b.b ENSGT00940000164100.A.c.a.d.a.a.a.b.b.a ENSGT00940000164100.A.c.b.b ENSGT00950000182960.a.b ##22 ENSGT00940000166999.A ENSGT00940000169174 Turbot MODERN SPECIES 21 ENSSMAG00000018414 ENSSMAG00000018432 ENSSMAG00000018454 ENSSMAG00000018475 ENSSMAG00000018485 ENSSMAG00000016784 ENSSMAG00000016803 ENSSMAG00000016827 ENSSMAG00000036934 ENSSMAG00000016871 ENSSMAG00000016886 ENSSMAG00000016922 ENSSMAG00000023322 ENSSMAG00000032244 ENSSMAG00000027844 ENSSMAG00000017003 ##22 ENSSMAG00000032892 ENSSMAG00000016994 ENSSMAG00000017128 ENSSMAG00000017039 ENSSMAG00000017032 ENSSMAG00000017013 ENSSMAG00000034191 SNX2 (ENSSMAG00000035363) ENSSMAG00000017145 ENSSMAG00000021639 PPIC (ENSSMAG00000027130) ENSSMAG00000012958 PRDM6 (ENSSMAG00000025085) CEP120 (ENSSMAG00000012970) ZNF608 (ENSSMAG00000013003) Carangaria_A ANCESTRAL SPECIES 95 ENSGT00940000177061 ENSGT00940000164100.A.c.b.b ENSGT01100000263483.D.d.a.b.b ENSGT00950000182960.a.b ##22 ENSGT00940000164100.A.c.a.d.a.a.a.b.b.a ENSGT01100000263483.D.c.b.b.b ENSGT00940000164100.A.c.a.c ENSGT00940000164100.A.c.a.d.a.a.b ENSGT00940000166999.A ENSGT00770000121806.b ENSGT00390000003213 ENSGT00940000154842.a.a ENSGT00940000154779.a.b.b ENSGT00390000001485 ENSGT00940000159470 ENSGT00940000155798 ENSGT00940000159786 ENSGT00940000155852 ENSGT00940000164100.A.c.a.d.a.b.a Barramundi perch MODERN SPECIES 37 DMTN (ENSLCAG00010014231) ENSLCAG00010014223 srp19 (ENSLCAG00010014197) pik3r1 (ENSLCAG00010014163) zgc:101664 (ENSLCAG00010014156) ENSLCAG00010014140 ENSLCAG00010014128 ENSLCAG00010014123 ENSLCAG00010014120 ENSLCAG00010014119 ENSLCAG00010014112 ENSLCAG00010014101 ENSLCAG00010014097 ENSLCAG00010014094 ENSLCAG00010014092 ENSLCAG00010013819 ##22 ENSLCAG00010013783 ENSLCAG00010013777 ENSLCAG00010027221 ENSLCAG00010027218 ENSLCAG00010027214 ENSLCAG00010027210 zgc:158343 (ENSLCAG00010027207) ENSLCAG00010027201 ENSLCAG00010027195 ENSLCAG00010027192 sncaip (ENSLCAG00010027184) ENSLCAG00010027178 SNX2 (ENSLCAG00010027169) PPIC (ENSLCAG00010027162) ENSLCAG00010027157 Seriola ANCESTRAL SPECIES 202 ENSGT01100000263483.D.d.a.b.b.c.b ENSGT00950000182960.a.b ##22 ENSGT00940000164100.A.c.a.d.a.a.a.b.b.a ENSGT01100000263483.D.c.b.b.b.c ENSGT01100000263538.A.b.h.c.a.e Yellowtail amberjack MODERN SPECIES 2407 ENSSLDG00000010143 ##22 Greater amberjack MODERN SPECIES 280 ENSSDUG00000004874 ENSSDUG00000004903 ENSSDUG00000004973 ENSSDUG00000005034 ##22 ENSSDUG00000005095 ENSSDUG00000005123 ENSSDUG00000005164 ENSSDUG00000005219 ENSSDUG00000005245 ENSSDUG00000005270 ENSSDUG00000005313 Anabantaria ANCESTRAL SPECIES 4 ENSGT00390000009378 ENSGT00940000155852 ENSGT01100000263483.D.c.b.b.a ENSGT00940000164100.A.c.a.d.a.b.b ENSGT00940000159786 ENSGT00940000155798 ENSGT00940000159470 ENSGT00390000001485 ENSGT00940000154779.a.b.b ENSGT00940000154842.a.a ENSGT00940000169174 ENSGT00770000121806.b ENSGT00940000166999.A ENSGT00940000164100.A.c.a.d.a.a.b ENSGT01100000263483.D.d.a.b.a.a.a.a.b ENSGT00950000182960.a.b ##22 ENSGT00940000164100.A.c.a.d.a.a.a.b.b.a ENSGT00940000164100.A.c.b.b ENSGT01100000263538.A.b.h.c.a ENSGT00940000154311.b ENSGT00940000165390.b.d ENSGT00940000155553.e.b ENSGT00530000065159 ENSGT00550000074618.b ENSGT00390000004950 ENSGT00500000044989 ENSGT00950000182850.a.b.b.a ENSGT00390000012859 ENSGT00950000182925.B.a ENSGT00940000156081.i ENSGT00940000154960 Zig-zag eel MODERN SPECIES 23 ENSMAMG00000018346 ENSMAMG00000018322 ENSMAMG00000018314 ENSMAMG00000018281 ENSMAMG00000025688 ENSMAMG00000018261 ENSMAMG00000025512 ENSMAMG00000018181 ENSMAMG00000024318 ENSMAMG00000028003 ENSMAMG00000026426 ENSMAMG00000018170 ENSMAMG00000018155 ENSMAMG00000026648 ENSMAMG00000024521 ENSMAMG00000018104 ##22 ENSMAMG00000018061 ENSMAMG00000028556 ENSMAMG00000026425 ENSMAMG00000024544 ENSMAMG00000028077 ENSMAMG00000026762 ENSMAMG00000018048 ENSMAMG00000027209 ENSMAMG00000018024 ENSMAMG00000017985 ENSMAMG00000017964 ENSMAMG00000017956 ENSMAMG00000017950 SNX2 (ENSMAMG00000017940) PPIC (ENSMAMG00000026514) Anabantoidei ANCESTRAL SPECIES 70 ENSGT00940000164100.A.c.b.b ENSGT00950000182960.a.b ##22 ENSGT00940000164100.A.c.a.d.a.a.a.b.b.a Climbing perch DUPLICATION Climbing perch DUPLICATION Climbing perch MODERN SPECIES 22 ENSATEG00000028347 ENSATEG00000027413 ENSATEG00000025792 ##22 ENSATEG00000025922 ENSATEG00000026099 ENSATEG00000027327 ENSATEG00000028380 ENSATEG00000012080 ENSATEG00000012086 ENSATEG00000026403 ENSATEG00000012163 ENSATEG00000012135 ENSATEG00000012144 ENSATEG00000011994 ##22 ENSATEG00000012201 ##22 ENSATEG00000027381 ##22 ENSATEG00000012250 ##22 ENSATEG00000012313 ENSATEG00000012423 ENSATEG00000012439 ENSATEG00000012442 ENSATEG00000028289 ENSATEG00000012492 ENSATEG00000012562 ENSATEG00000012588 ENSATEG00000012604 ENSATEG00000012637 ENSATEG00000029749 ENSATEG00000012689 ENSATEG00000012742 ENSATEG00000012747 Climbing perch MODERN SPECIES 22 ENSATEG00000011891 ENSATEG00000011931 ENSATEG00000028347 ENSATEG00000027413 ENSATEG00000025792 ##22 ENSATEG00000025922 ENSATEG00000026099 ENSATEG00000027327 ENSATEG00000028380 ENSATEG00000012080 ENSATEG00000012086 ENSATEG00000026403 ENSATEG00000012163 ENSATEG00000012135 ENSATEG00000012144 ENSATEG00000011994 ##22 ENSATEG00000012201 ##22 ENSATEG00000027381 ##22 ENSATEG00000012250 ##22 ENSATEG00000012313 ENSATEG00000012423 ENSATEG00000012439 ENSATEG00000012442 ENSATEG00000028289 ENSATEG00000012492 ENSATEG00000012562 ENSATEG00000012588 ENSATEG00000012604 ENSATEG00000012637 ENSATEG00000029749 ENSATEG00000012689 Climbing perch MODERN SPECIES 22 ENSATEG00000012313 ENSATEG00000012250 ##22 ENSATEG00000027381 ##22 ENSATEG00000012201 ##22 ENSATEG00000011994 ##22 ENSATEG00000012144 ENSATEG00000012135 ENSATEG00000012163 ENSATEG00000026403 ENSATEG00000012086 ENSATEG00000012080 ENSATEG00000028380 ENSATEG00000027327 ENSATEG00000026099 ENSATEG00000025922 ENSATEG00000025792 ##22 ENSATEG00000027413 ENSATEG00000028347 ENSATEG00000011931 ENSATEG00000011891 ENSATEG00000026419 ENSATEG00000011870 ENSATEG00000011918 ENSATEG00000011814 ENSATEG00000011804 ENSATEG00000011750 ENSATEG00000011635 ENSATEG00000011705 ENSATEG00000026959 ENSATEG00000011882 ENSATEG00000027609 Siamese fighting fish DUPLICATION Siamese fighting fish MODERN SPECIES 20 ENSBSLG00000001727 nudt18 (ENSBSLG00000020979) ENSBSLG00000020184 ENSBSLG00000020177 ENSBSLG00000019942 ENSBSLG00000019891 mak16 (ENSBSLG00000019874) ENSBSLG00000019809 ENSBSLG00000019770 DMTN (ENSBSLG00000019506) ENSBSLG00000019493 srp19 (ENSBSLG00000019470) ENSBSLG00000019423 ENSBSLG00000019402 ENSBSLG00000018426 ENSBSLG00000018317 ##22 ENSBSLG00000018306 ENSBSLG00000018296 ENSBSLG00000018191 ENSBSLG00000017999 sncaip (ENSBSLG00000017983) ENSBSLG00000017931 PPIC (ENSBSLG00000017923) sncaip (ENSBSLG00000017899) ENSBSLG00000017881 SNX2 (ENSBSLG00000017193) ENSBSLG00000017127 PPIC (ENSBSLG00000017071) ENSBSLG00000017057 ENSBSLG00000017042 ENSBSLG00000017019 Siamese fighting fish MODERN SPECIES 19 ENSBSLG00000002254 mief1 (ENSBSLG00000002229) ENSBSLG00000002220 mpst (ENSBSLG00000002209) ENSBSLG00000002186 il2rb (ENSBSLG00000002162) ENSBSLG00000002143 chst12a (ENSBSLG00000002130) CARD11 (ENSBSLG00000002054) ap5z1 (ENSBSLG00000002014) MMD2 (ENSBSLG00000002000) wipi2 (ENSBSLG00000001996) smurf1 (ENSBSLG00000001842) ENSBSLG00000001775 ENSBSLG00000001756 ##21 ENSBSLG00000001690 ##22 TNRC18 (ENSBSLG00000021039) slc29a4a (ENSBSLG00000020485) atp5mf (ENSBSLG00000020484) cpsf4 (ENSBSLG00000020471) shmt1 (ENSBSLG00000020011) pdap1b (ENSBSLG00000019956) bud31 (ENSBSLG00000019947) smcr8a (ENSBSLG00000019940) TOP3A (ENSBSLG00000019675) ENSBSLG00000019668 EP300 (ENSBSLG00000018845) xpnpep3 (ENSBSLG00000018571) st13 (ENSBSLG00000018560) rbx1 (ENSBSLG00000018549) ENSBSLG00000018480 Chordata ANCESTRAL SPECIES 115 ENSGT00950000182960.b ##22 ENSGT00940000167032 Ciona DUPLICATION Ciona ANCESTRAL SPECIES 388 ENSGT00950000182960.b.a ##22 ENSGT00940000154511 ENSGT00940000170090 ENSGT00950000182983.A Ciona intestinalis MODERN SPECIES 7 ENSCING00000012518 ENSCING00000012520 ENSCING00000008912 ENSCING00000000546 ENSCING00000008914 ENSCING00000021268 ENSCING00000024731 ENSCING00000012521 ENSCING00000022925 ENSCING00000008910 ENSCING00000020319 ENSCING00000023820 ENSCING00000023318 ENSCING00000017044 ENSCING00000012525 ENSCING00000008902 ##22 snail (ENSCING00000008903) ENSCING00000008904 ENSCING00000008905 ENSCING00000008906 ENSCING00000008907 ENSCING00000008908 ENSCING00000025045 ENSCING00000008909 ENSCING00000020526 ENSCING00000019411 ENSCING00000012532 ENSCING00000012531 ENSCING00000020403 ENSCING00000006444 ENSCING00000022976 Ciona savignyi MODERN SPECIES 2 ENSCSAVG00000009790 ENSCSAVG00000009792 ENSCSAVG00000009794 ENSCSAVG00000009795 ENSCSAVG00000009796 ENSCSAVG00000009797 ENSCSAVG00000009798 ENSCSAVG00000009799 ENSCSAVG00000009800 ENSCSAVG00000009802 ENSCSAVG00000009803 ENSCSAVG00000009804 ENSCSAVG00000009805 ENSCSAVG00000009806 ENSCSAVG00000009816 ENSCSAVG00000009817 ##22 ENSCSAVG00000009819 ENSCSAVG00000009820 ENSCSAVG00000009821 ENSCSAVG00000009822 ENSCSAVG00000009824 ENSCSAVG00000009825 ENSCSAVG00000009829 ENSCSAVG00000009831 ENSCSAVG00000009833 ENSCSAVG00000009886 ENSCSAVG00000009889 ENSCSAVG00000009893 ENSCSAVG00000009896 ENSCSAVG00000009898 ENSCSAVG00000009900 Ciona ANCESTRAL SPECIES 1246 ENSGT00950000182960.b.b ##22 ENSGT00940000167032 Ciona intestinalis MODERN SPECIES 75 ENSCING00000001009 ENSCING00000001010 ENSCING00000001019 ENSCING00000000839 ENSCING00000020027 ENSCING00000022918 ENSCING00000014702 ENSCING00000023773 ENSCING00000019474 ENSCING00000018563 ENSCING00000024599 ENSCING00000000843 ENSCING00000000846 ##22 ENSCING00000024231 ENSCING00000008797 #22 ENSCING00000008777 ##22 ENSCING00000010083 ENSCING00000000848 ##22 ENSCING00000008771 ENSCING00000024432 ENSCING00000008770 ENSCING00000019212 ENSCING00000019491 ENSCING00000018683 ENSCING00000019883 ENSCING00000022333 ENSCING00000021665 ENSCING00000024330 ENSCING00000021945 ENSCING00000021142 zf(c3h)-14 (ENSCING00000023848) Vertebrata ANCESTRAL SPECIES 994 ENSGT00950000182960.b ##22 ENSGT00940000167032 Gnathostomata ANCESTRAL SPECIES 267 ENSGT00940000155511 ENSGT00390000016956 ENSGT00390000009776 ENSGT00940000161675 ENSGT00940000153991.a.b ENSGT00390000010744 ENSGT00940000161579 ENSGT00890000139453.b ENSGT00950000182960.b ##22 ENSGT00940000167032 ENSGT00940000157208 ENSGT00940000156971.A Euteleostomi ANCESTRAL SPECIES 7 ENSGT00510000048154 ENSGT00940000153313.A ENSGT00940000162537 ENSGT00950000183022.a.a.a ENSGT00950000185427 ENSGT00940000155511 ENSGT01030000234590.A.a.b ENSGT00940000166029 ENSGT00390000016956 ENSGT00390000009776 ENSGT00940000161675 ENSGT00940000153991.a.b ENSGT00390000010744 ENSGT00940000161579 ENSGT00890000139453.b ENSGT00950000182960.b ##22 ENSGT00940000167032 ENSGT00940000157208 ENSGT00940000156971.A Sarcopterygii ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Coelacanth DUPLICATION Coelacanth MODERN SPECIES 1794 ENSLACG00000003662 ENSLACG00000004871 ##22 ENSLACG00000006303 TBRG4 (ENSLACG00000008265) ENSLACG00000009152 Coelacanth MODERN SPECIES 3000 ENSLACG00000001353 ENSLACG00000001464 ##22 ENSLACG00000001682 her8.2 (ENSLACG00000002946) hes6 (ENSLACG00000003738) per2 (ENSLACG00000004859) Tetrapoda ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Amniota ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Mammalia ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Theria ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Eutheria ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Boreoeutheria ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Euarchontoglires ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Euarchontoglires_A ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Glires ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Rodentia ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Rodentia_B ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Myomorpha ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Lesser Egyptian jerboa MODERN SPECIES 178 Wdr1 (ENSJJAG00000004749) Slc2a9 (ENSJJAG00000012420) Bloc1s3 (ENSJJAG00000012549) ENSJJAG00000015540 ENSJJAG00000016417 ENSJJAG00000016582 Ppp2r2c (ENSJJAG00000016987) Wfs1 (ENSJJAG00000018904) Otop1 (ENSJJAG00000019947) Tmem128 (ENSJJAG00000014554) ENSJJAG00000014925 ENSJJAG00000015468 ENSJJAG00000016460 Nsg1 (ENSJJAG00000016805) Stx18 (ENSJJAG00000017854) ENSJJAG00000018737 ##22 Msx1 (ENSJJAG00000019602) Cytl1 (ENSJJAG00000020976) Stk32b (ENSJJAG00000012329) Evc2 (ENSJJAG00000015517) Evc (ENSJJAG00000017287) Crmp1 (ENSJJAG00000000054) Jakmip1 (ENSJJAG00000008427) ENSJJAG00000010527 Primates ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Haplorrhini ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Simiiformes ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Catarrhini ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Cercopithecidae ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Cercopithecinae ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Cercopithecinae_a ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Cercopithecinae_b ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Cercopithecinae_d ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Drill MODERN SPECIES 1329 ITGA4 (ENSMLEG00000036700) CERKL (ENSMLEG00000036134) NEUROD1 (ENSMLEG00000011647) ENSMLEG00000043670 ITPRID2 (ENSMLEG00000044052) PPP1R1C (ENSMLEG00000022372) PDE1A (ENSMLEG00000034946) ENSMLEG00000029830 ##22 DNAJC10 (ENSMLEG00000029343) FRZB (ENSMLEG00000036520) NCKAP1 (ENSMLEG00000041896) ENSMLEG00000042865 DUSP19 (ENSMLEG00000034841) NUP35 (ENSMLEG00000035422) ENSMLEG00000009801 Laurasiatheria ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Carnivora ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Caniformia ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Caniformia_b ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Ursidae ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Giant Panda MODERN SPECIES 1986 ENSAMEG00000025539 ##22 Platypus MODERN SPECIES INPP5D (ENSOANG00000007782) ATG16L1 (ENSOANG00000011698) SAG (ENSOANG00000007137) DGKD (ENSOANG00000004697) PROC (ENSOANG00000028449) IWS1 (ENSOANG00000006498) MYO7B (ENSOANG00000008961) GPR17 (ENSOANG00000036171) LIMS2 (ENSOANG00000008959) WDR33 (ENSOANG00000008958) ENSOANG00000046103 AMMECR1L (ENSOANG00000042318) SAP130 (ENSOANG00000007757) UGGT1 (ENSOANG00000007756) ENSOANG00000007755 ENSOANG00000007850 ##22 PLEKHB2 (ENSOANG00000022068) FAM168B (ENSOANG00000007703) ENSOANG00000029848 ENSOANG00000048436 KLHL6 (ENSOANG00000002495) KLHL24 (ENSOANG00000009142) YEATS2 (ENSOANG00000009141) ENSOANG00000037165 ENSOANG00000045406 ENSOANG00000039704 DUSP28 (ENSOANG00000049717) ENSOANG00000050479 GPC1 (ENSOANG00000004804) ENSOANG00000044098 ENSOANG00000009404 Sauria ANCESTRAL SPECIES 10 ENSGT00390000013696 ENSGT00390000018145 ENSGT00390000010331 ENSGT00940000153487.b.b ENSGT00390000005764 ENSGT00530000063106.B ENSGT00940000155333.B ENSGT00940000154914 ENSGT00940000155836.B ENSGT01030000234532.B.e.b ENSGT00390000009486 ENSGT00530000062962.b.a ENSGT00940000160717 ENSGT00940000159637 ENSGT00940000156969 ENSGT00950000182960.b ##22 ENSGT00950000183129.a ENSGT01050000244841.A.a.a ENSGT00390000008152.B.b ENSGT00390000017828 ENSGT00510000052431 ENSGT00940000160167 ENSGT00940000161629 ENSGT00390000008092.b ENSGT00390000017392 ENSGT00390000017625 ENSGT00390000007857 ENSGT00940000154170.B ENSGT00530000063760.a ENSGT00940000159506 ENSGT00940000153289.b Archelosauria DUPLICATION Archelosauria DUPLICATION Archelosauria ANCESTRAL SPECIES 7 ENSGT00390000014071 ENSGT00950000183142.a.a ENSGT00940000155570 ENSGT00940000155496.b ENSGT00390000008903 ENSGT00940000165045 ENSGT00390000002743 ENSGT00390000009065 ENSGT01050000244838.H.c ENSGT00950000182976.b.b ENSGT00510000051272 ENSGT01030000234840 ENSGT00940000155674 ENSGT00940000157368 ENSGT00940000158739 ENSGT00950000182960.b.e.a ##22 ENSGT00420000029753.a ENSGT01030000234573.A.b.b.b ENSGT00390000001437 ENSGT00940000159154 ENSGT00950000182908.A ENSGT00940000159608 ENSGT00940000155603.A.b ENSGT00960000189528 ENSGT00940000157507 ENSGT00390000005646 ENSGT00940000156730 ENSGT00940000156183 ENSGT00940000157286 ENSGT00940000155998 ENSGT00940000153270.b.a Cryptodira ANCESTRAL SPECIES 9 ENSGT00390000014071 ENSGT00940000163637 ENSGT00950000183142.a.a ENSGT00940000155570 ENSGT00940000155496.b ENSGT00390000008903 ENSGT00390000002743 ENSGT00390000009065 ENSGT01050000244838.H.c ENSGT00950000182976.b.b ENSGT01030000234840 ENSGT00510000051272 ENSGT00940000155674 ENSGT00940000157368 ENSGT00940000158739 ENSGT00950000182960.b.e.a ##22 ENSGT00420000029753.a ENSGT01030000234573.A.b.b.b ENSGT00390000001437 ENSGT00940000159154 ENSGT00950000182908.A ENSGT00940000159608 ENSGT00940000155603.A.b ENSGT00960000189528 ENSGT00940000157507 ENSGT00390000005646 ENSGT00940000156730 ENSGT00940000156183 ENSGT00940000157286 ENSGT00940000155998 ENSGT00940000153270.b.a Testudinoidea ANCESTRAL SPECIES 7 ENSGT00940000163637 ENSGT00950000183142.a.a ENSGT00940000155570 ENSGT00940000155496.b ENSGT00940000165627 ENSGT00390000008903 ENSGT00390000002743 ENSGT00390000009065 ENSGT01050000244838.H.c ENSGT00950000182976.b.b ENSGT01030000234840 ENSGT00510000051272 ENSGT00940000155674 ENSGT00940000157368 ENSGT00940000158739 ENSGT00950000182960.b.e.a ##22 ENSGT00420000029753.a ENSGT01030000234573.A.b.b.b ENSGT00390000001437 ENSGT00940000159154 ENSGT00950000182908.A ENSGT00940000159608 ENSGT00940000155603.A.b ENSGT00960000189528 ENSGT00940000157507 ENSGT00390000005646 ENSGT00940000156730 ENSGT00940000156183 ENSGT00940000157286 ENSGT00940000155998 ENSGT00940000153270.b.a Emydidae ANCESTRAL SPECIES 7 ENSGT00950000182909.a ENSGT00940000154484.B.a.a ENSGT00390000014071 ENSGT00950000183142.a.a ENSGT00940000155570 ENSGT00940000155496.b ENSGT00940000165627 ENSGT00390000008903 ENSGT00390000002743 ENSGT00390000009065 ENSGT01050000244838.H.c ENSGT00950000182976.b.b ENSGT01030000234840 ENSGT00940000157368 ENSGT00940000158739 ENSGT00950000182960.b.e.a ##22 ENSGT00420000029753.a ENSGT01030000234573.A.b.b.b ENSGT00390000001437 ENSGT00940000159154 ENSGT00950000182908.A ENSGT00940000159608 ENSGT00940000155603.A.b ENSGT00940000157507 ENSGT00390000005646 ENSGT00940000156730 ENSGT00940000156183 ENSGT00940000157286 ENSGT00940000155998 ENSGT00940000153270.b.a ENSGT00940000159371 Three-toed box turtle MODERN SPECIES 29 KIF2A (ENSTMTG00000016859) ZSWIM6 (ENSTMTG00000016555) ENSTMTG00000016526 SMIM15 (ENSTMTG00000016518) NDUFAF2 (ENSTMTG00000016512) ERCC8 (ENSTMTG00000016502) ELOVL7 (ENSTMTG00000016495) DEPDC1B (ENSTMTG00000016465) ENSTMTG00000016434 ENSTMTG00000016426 ENSTMTG00000016404 ENSTMTG00000016395 PDE4D (ENSTMTG00000016368) RAB3C (ENSTMTG00000016342) PLK2 (ENSTMTG00000016308) ENSTMTG00000016294 ##22 GPBP1 (ENSTMTG00000016275) MIER3 (ENSTMTG00000016248) SETD9 (ENSTMTG00000016230) MAP3K1 (ENSTMTG00000016186) ANKRD55 (ENSTMTG00000016159) IL6ST (ENSTMTG00000015929) IL31RA (ENSTMTG00000015868) DDX4 (ENSTMTG00000015832) SLC38A9 (ENSTMTG00000015807) PLPP1 (ENSTMTG00000015784) MTREX (ENSTMTG00000015682) DHX29 (ENSTMTG00000015619) CCNO (ENSTMTG00000015584) MCIDAS (ENSTMTG00000015562) GPX8 (ENSTMTG00000015545) painted turtle MODERN SPECIES 818 ENSCPBG00000005475 ENSCPBG00000005482 PDE4D (ENSCPBG00000005500) RAB3C (ENSCPBG00000005526) PLK2 (ENSCPBG00000005538) ENSCPBG00000005552 ##22 GPBP1 (ENSCPBG00000005559) MIER3 (ENSCPBG00000005569) SETD9 (ENSCPBG00000005591) MAP3K1 (ENSCPBG00000005611) ANKRD55 (ENSCPBG00000005635) IL6ST (ENSCPBG00000005657) IL31RA (ENSCPBG00000005679) Testudinidae ANCESTRAL SPECIES 30 ENSGT00940000157368 ENSGT00940000158739 ENSGT00950000182960.b.e.a ##22 ENSGT00420000029753.a ENSGT01030000234573.A.b.b.b ENSGT00390000001437 ENSGT00940000159154 ENSGT00950000182908.A ENSGT00940000159608 ENSGT00940000155603.A.b ENSGT00960000189528 ENSGT00940000157507 ENSGT00390000005646 ENSGT00940000156730 ENSGT00940000156183 ENSGT00940000157286 ENSGT00940000155998 ENSGT00940000153270.b.a Abingdon island giant tortoise MODERN SPECIES 2321 ARIH1 (ENSCABG00000021105) ENSCABG00000021125 ADPGK (ENSCABG00000021130) ENSCABG00000021135 ##22 Goode s thornscrub tortoise MODERN SPECIES 20 KIF2A (ENSGEVG00005020274) ZSWIM6 (ENSGEVG00005020331) ENSGEVG00005020377 SMIM15 (ENSGEVG00005005657) NDUFAF2 (ENSGEVG00005005678) ERCC8 (ENSGEVG00005005732) ENSGEVG00005005797 ELOVL7 (ENSGEVG00005005874) DEPDC1B (ENSGEVG00005006049) ENSGEVG00005006113 ENSGEVG00005006123 ENSGEVG00005006136 PDE4D (ENSGEVG00005006168) RAB3C (ENSGEVG00005006189) PLK2 (ENSGEVG00005006226) ENSGEVG00005006316 ##22 GPBP1 (ENSGEVG00005006348) MIER3 (ENSGEVG00005006390) SETD9 (ENSGEVG00005006421) MAP3K1 (ENSGEVG00005006502) ANKRD55 (ENSGEVG00005006680) ENSGEVG00005006719 IL6ST (ENSGEVG00005006744) ENSGEVG00005006812 DDX4 (ENSGEVG00005006846) SLC38A9 (ENSGEVG00005006887) PLPP1 (ENSGEVG00005006966) MTREX (ENSGEVG00005007009) DHX29 (ENSGEVG00005007059) CCNO (ENSGEVG00005007109) MCIDAS (ENSGEVG00005007134) Archosauria ANCESTRAL SPECIES 1 ENSGT00940000163637 ENSGT00390000014071 ENSGT00950000183142.a.a ENSGT00940000155570 ENSGT00940000155496.b ENSGT00940000165045 ENSGT00390000002743 ENSGT00390000009065 ENSGT01050000244838.H.c ENSGT00950000182976.b.b ENSGT00510000051272 ENSGT01030000234840 ENSGT00940000155674 ENSGT00940000157368 ENSGT00940000158739 ENSGT00950000182960.b.e.a ##22 ENSGT00420000029753.a ENSGT01030000234573.A.b.b.b ENSGT00390000001437 ENSGT00940000159154 ENSGT00950000182908.A ENSGT00940000159608 ENSGT00940000155603.A.b ENSGT00960000189528 ENSGT00940000157507 ENSGT00390000005646 ENSGT00940000156730 ENSGT00940000156183 ENSGT00940000157286 ENSGT00940000155998 ENSGT00940000153270.b.a Australian saltwater crocodile MODERN SPECIES 29 IPO11 (ENSCPRG00005017139) DIMT1 (ENSCPRG00005017133) KIF2A (ENSCPRG00005017116) ENSCPRG00005017114 ZSWIM6 (ENSCPRG00005017108) ENSCPRG00005017100 NDUFAF2 (ENSCPRG00005017096) ERCC8 (ENSCPRG00005017080) ELOVL7 (ENSCPRG00005017075) DEPDC1B (ENSCPRG00005017067) ENSCPRG00005017062 PDE4D (ENSCPRG00005017055) RAB3C (ENSCPRG00005017051) ENSCPRG00005017047 PLK2 (ENSCPRG00005017044) ENSCPRG00005017038 ##22 GPBP1 (ENSCPRG00005017036) MIER3 (ENSCPRG00005017032) SETD9 (ENSCPRG00005017031) MAP3K1 (ENSCPRG00005017015) ANKRD55 (ENSCPRG00005017007) IL6ST (ENSCPRG00005017002) IL31RA (ENSCPRG00005016990) DDX4 (ENSCPRG00005016968) SLC38A9 (ENSCPRG00005016954) PLPP1 (ENSCPRG00005016939) MTREX (ENSCPRG00005016884) DHX29 (ENSCPRG00005016856) CCNO (ENSCPRG00005016853) MCIDAS (ENSCPRG00005016846) GPX8 (ENSCPRG00005016841) Archelosauria ANCESTRAL SPECIES ENSGT00950000182960.b.e.b ##22 Cryptodira ANCESTRAL SPECIES ENSGT00950000182960.b.e.b ##22 Testudinoidea ANCESTRAL SPECIES 20 ENSGT01030000234571.b.b.b.a.b ENSGT00940000164482 ENSGT00390000006521 ENSGT00440000039706 ENSGT00390000005532 ENSGT00390000009359.b ENSGT00940000155758 ENSGT00390000017736.b ENSGT00940000159714 ENSGT00390000013558 ENSGT00940000153217.d ENSGT00940000153217.c.b.b.a ENSGT00940000153217.c.b.b.b ENSGT00940000156151 ENSGT00940000153798.A.b ENSGT00950000182960.b.e.b ##22 ENSGT00390000002421 ENSGT00940000162724 ENSGT00940000156759 ENSGT00940000156136 ENSGT00560000077335 ENSGT00510000046803.a ENSGT00600000084471 ENSGT00390000002461 ENSGT00390000006238 ENSGT00940000158496 ENSGT00390000003344 ENSGT00390000017957 ENSGT00390000005732 ENSGT00940000154209.b ENSGT00940000154484.A Testudinidae ANCESTRAL SPECIES 22 ENSGT01030000234571.b.b.b.a.b ENSGT00940000164482 ENSGT00390000006521 ENSGT00440000039706 ENSGT00390000005532 ENSGT00390000009359.b ENSGT00940000155758 ENSGT00390000017736.b ENSGT00940000159714 ENSGT00390000013558 ENSGT00940000153217.d ENSGT00940000153217.c.b.b.a ENSGT00940000153217.c.b.b.b ENSGT00940000156151 ENSGT00940000153798.A.b ENSGT00950000182960.b.e.b ##22 ENSGT00390000002421 ENSGT00940000162724 ENSGT00940000156759 ENSGT00940000156136 ENSGT00560000077335 ENSGT00510000046803.a ENSGT00600000084471 ENSGT00390000002461 ENSGT00390000006238 ENSGT00940000158496 ENSGT00390000003344 ENSGT00390000017957 ENSGT00390000005732 ENSGT00940000154209.b ENSGT00940000154484.A Abingdon island giant tortoise MODERN SPECIES 1268 ARHGEF19 (ENSCABG00000014547) ENSCABG00000014545 CPLANE2 (ENSCABG00000014544) FBXO42 (ENSCABG00000014543) SZRD1 (ENSCABG00000014541) NECAP2 (ENSCABG00000014539) CROCC (ENSCABG00000014537) MFAP2 (ENSCABG00000014533) ATP13A2 (ENSCABG00000014532) SDHB (ENSCABG00000014530) PADI2 (ENSCABG00000014526) ENSCABG00000014407 ENSCABG00000014349 RCC2 (ENSCABG00000014338) ARHGEF10L (ENSCABG00000013623) ENSCABG00000013606 ##22 IGSF21 (ENSCABG00000013595) KLHDC7A (ENSCABG00000013585) PAX7 (ENSCABG00000013562) TAS1R2 (ENSCABG00000013536) ALDH4A1 (ENSCABG00000012709) IFFO2 (ENSCABG00000012659) UBR4 (ENSCABG00000011990) EMC1 (ENSCABG00000011970) MRTO4 (ENSCABG00000011967) AKR7L (ENSCABG00000011966) SLC66A1 (ENSCABG00000011964) Goode s thornscrub tortoise MODERN SPECIES 9 ARHGEF19 (ENSGEVG00005019573) ENSGEVG00005019580 CPLANE2 (ENSGEVG00005019595) FBXO42 (ENSGEVG00005019606) SZRD1 (ENSGEVG00005019616) NECAP2 (ENSGEVG00005019660) CROCC (ENSGEVG00005019688) MFAP2 (ENSGEVG00005019714) ATP13A2 (ENSGEVG00005019722) SDHB (ENSGEVG00005019736) PADI2 (ENSGEVG00005019762) ENSGEVG00005019796 ENSGEVG00005019835 RCC2 (ENSGEVG00005019852) ARHGEF10L (ENSGEVG00005019951) ENSGEVG00005004352 ##22 IGSF21 (ENSGEVG00005004479) KLHDC7A (ENSGEVG00005004585) PAX7 (ENSGEVG00005004653) TAS1R2 (ENSGEVG00005004863) ALDH4A1 (ENSGEVG00005005112) IFFO2 (ENSGEVG00005005162) UBR4 (ENSGEVG00005005278) EMC1 (ENSGEVG00005005598) MRTO4 (ENSGEVG00005005628) AKR7L (ENSGEVG00005005659) SLC66A1 (ENSGEVG00005005688) CAPZB (ENSGEVG00005005733) ENSGEVG00005005764 NBL1 (ENSGEVG00005005796) ENSGEVG00005005832 Emydidae ANCESTRAL SPECIES 23 ENSGT00940000160786 ENSGT00940000164482 ENSGT00390000006521 ENSGT00440000039706 ENSGT00390000005532 ENSGT00390000009359.b ENSGT00940000155758 ENSGT00390000017736.b ENSGT00940000159714 ENSGT00390000013558 ENSGT00940000153217.d ENSGT00940000153217.c.b.b.a ENSGT00940000153217.c.b.b.b ENSGT00940000156151 ENSGT00940000153798.A.b ENSGT00950000182960.b.e.b ##22 ENSGT00390000002421 ENSGT00940000162724 ENSGT00940000156759 ENSGT00940000156136 ENSGT00560000077335 ENSGT00510000046803.a ENSGT00600000084471 ENSGT00390000002461 ENSGT00390000006238 ENSGT00940000158496 ENSGT00390000003344 ENSGT00390000017957 ENSGT00390000005732 ENSGT00940000154209.b ENSGT01010000222287.A Three-toed box turtle MODERN SPECIES 345 EPHA2 (ENSTMTG00000022168) ENSTMTG00000022138 CPLANE2 (ENSTMTG00000022122) FBXO42 (ENSTMTG00000022118) SZRD1 (ENSTMTG00000022114) NECAP2 (ENSTMTG00000022106) CROCC (ENSTMTG00000021777) MFAP2 (ENSTMTG00000021683) ATP13A2 (ENSTMTG00000020646) SDHB (ENSTMTG00000020530) PADI2 (ENSTMTG00000020476) ENSTMTG00000020339 ENSTMTG00000020191 RCC2 (ENSTMTG00000020163) ARHGEF10L (ENSTMTG00000019398) ENSTMTG00000019313 ##22 IGSF21 (ENSTMTG00000019215) KLHDC7A (ENSTMTG00000019161) PAX7 (ENSTMTG00000019075) TAS1R2 (ENSTMTG00000018909) ALDH4A1 (ENSTMTG00000018853) IFFO2 (ENSTMTG00000018831) UBR4 (ENSTMTG00000017434) EMC1 (ENSTMTG00000017308) SLC66A1 (ENSTMTG00000022258) CAPZB (ENSTMTG00000022257) ENSTMTG00000022253 NBL1 (ENSTMTG00000022252) ENSTMTG00000022248 TMCO4 (ENSTMTG00000022243) RNF186 (ENSTMTG00000022241) painted turtle MODERN SPECIES 927 ENSCPBG00000009940 ENSCPBG00000009943 ENSCPBG00000009944 RCC2 (ENSCPBG00000009948) ARHGEF10L (ENSCPBG00000010013) ENSCPBG00000010019 ##22 IGSF21 (ENSCPBG00000010023) KLHDC7A (ENSCPBG00000010033) ENSCPBG00000010035 Archelosauria ANCESTRAL SPECIES 13 ENSGT00390000013696 ENSGT00390000018145 ENSGT00390000010331 ENSGT00940000153487.b.b ENSGT00390000005764 ENSGT00530000063106.B ENSGT00940000155333.B ENSGT00940000154914 ENSGT00940000155836.B ENSGT01030000234532.B.e.b ENSGT00390000009486 ENSGT00530000062962.b.a ENSGT00940000160717 ENSGT00940000159637 ENSGT00940000156969 ENSGT00950000182960.b.f ##22 ENSGT00950000183129.a ENSGT01050000244841.A.a.a ENSGT00390000008152.B.b ENSGT00390000017828 ENSGT00510000052431 ENSGT00940000160167 ENSGT00940000161629 ENSGT00390000008092.b ENSGT00390000017392 ENSGT00390000017625 ENSGT00390000007857 ENSGT00940000154170.B ENSGT00530000063760.a ENSGT00940000159506 ENSGT00940000153289.b Archosauria ANCESTRAL SPECIES 9 ENSGT00390000013696 ENSGT00390000018145 ENSGT00390000010331 ENSGT00940000153487.b.b ENSGT00390000005764 ENSGT00530000063106.B ENSGT00940000155333.B ENSGT00940000154914 ENSGT00940000155836.B ENSGT01030000234532.B.e.b ENSGT00390000009486 ENSGT00530000062962.b.a ENSGT00940000160717 ENSGT00940000159637 ENSGT00940000156969 ENSGT00950000182960.b.f ##22 ENSGT00950000183129.a ENSGT01050000244841.A.a.a ENSGT00390000008152.B.b ENSGT00390000017828 ENSGT00940000160167 ENSGT00940000161629 ENSGT00390000008092.b ENSGT00390000017392 ENSGT00390000017625 ENSGT00390000007857 ENSGT00940000154170.B ENSGT00530000063760.a ENSGT00940000159506 ENSGT00940000153289.b ENSGT00940000166109 Australian saltwater crocodile MODERN SPECIES 31 RPL4 (ENSCPRG00005000630) SNAPC5 (ENSCPRG00005000626) MAP2K1 (ENSCPRG00005000623) TIPIN (ENSCPRG00005000607) DIS3L (ENSCPRG00005000594) MEGF11 (ENSCPRG00005000552) RAB11A (ENSCPRG00005000532) DENND4A (ENSCPRG00005000499) ENSCPRG00005000484 ENSCPRG00005000476 INTS14 (ENSCPRG00005000472) HACD3 (ENSCPRG00005000454) DPP8 (ENSCPRG00005000410) IGDCC4 (ENSCPRG00005000364) IGDCC3 (ENSCPRG00005000353) ENSCPRG00005000326 ##22 PARP16 (ENSCPRG00005000279) GNRHR (ENSCPRG00005000240) CILP (ENSCPRG00005000226) MTFMT (ENSCPRG00005000206) RASL12 (ENSCPRG00005000165) KBTBD13 (ENSCPRG00005000153) UBAP1L (ENSCPRG00005000139) ENSCPRG00005000092 CLPX (ENSCPRG00005000076) SPG21 (ENSCPRG00005000063) ANKDD1A (ENSCPRG00005018498) PLEKHO2 (ENSCPRG00005018494) PCSK6 (ENSCPRG00005018373) SNRPA1 (ENSCPRG00005018268) SELENOS (ENSCPRG00005018265) Lepidosauria ANCESTRAL SPECIES 19 ENSGT00940000157369 ENSGT00390000013696 ENSGT00390000018145 ENSGT00390000010331 ENSGT00940000153487.b.b ENSGT00390000005764 ENSGT00530000063106.B ENSGT00940000155333.B ENSGT00940000154914 ENSGT00940000155836.B ENSGT00390000009486 ENSGT00530000062962.b.a ENSGT00940000160717 ENSGT00940000159637 ENSGT00940000156969 ENSGT00950000182960.b ##22 ENSGT00950000183129.a ENSGT01050000244841.A.a.a ENSGT00390000008152.B.b ENSGT00390000017828 ENSGT00940000160167 ENSGT00940000161629 ENSGT00390000008092.b ENSGT00390000017392 ENSGT00390000017625 ENSGT00390000007857 ENSGT00940000154170.B ENSGT00530000063760.a ENSGT00940000159506 ENSGT00940000153289.b ENSGT00940000166109 Episquamata ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Laterata ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Argentine black and white tegu DUPLICATION Argentine black and white tegu MODERN SPECIES 95 ENSSMRG00000000596 ENSSMRG00000000578 RPP25 (ENSSMRG00000000566) COX5A (ENSSMRG00000000363) FAM219B (ENSSMRG00000000345) MPI (ENSSMRG00000000313) SCAMP2 (ENSSMRG00000000283) ULK3 (ENSSMRG00000000189) CPLX3 (ENSSMRG00000000178) CSK (ENSSMRG00000000114) ENSSMRG00000000084 EDC3 (ENSSMRG00000000062) CLK3 (ENSSMRG00000000039) ARID3B (ENSSMRG00000022681) ENSSMRG00000022680 ENSSMRG00000022679 ##22 ENSSMRG00000022678 ##22 UBL7 (ENSSMRG00000022676) SEMA7A (ENSSMRG00000022675) CYP11A1 (ENSSMRG00000022674) ENSSMRG00000022673 ENSSMRG00000022672 STRA6 (ENSSMRG00000022671) ISLR (ENSSMRG00000022670) ISLR2 (ENSSMRG00000022669) ENSSMRG00000022667 ENSSMRG00000022666 MYZAP (ENSSMRG00000022665) POLR2M (ENSSMRG00000022664) ALDH1A2 (ENSSMRG00000022663) AQP9 (ENSSMRG00000022662) Argentine black and white tegu MODERN SPECIES 95 ENSSMRG00000000578 RPP25 (ENSSMRG00000000566) COX5A (ENSSMRG00000000363) FAM219B (ENSSMRG00000000345) MPI (ENSSMRG00000000313) SCAMP2 (ENSSMRG00000000283) ULK3 (ENSSMRG00000000189) CPLX3 (ENSSMRG00000000178) CSK (ENSSMRG00000000114) ENSSMRG00000000084 EDC3 (ENSSMRG00000000062) CLK3 (ENSSMRG00000000039) ARID3B (ENSSMRG00000022681) ENSSMRG00000022680 ENSSMRG00000022679 ##22 ENSSMRG00000022678 ##22 UBL7 (ENSSMRG00000022676) SEMA7A (ENSSMRG00000022675) CYP11A1 (ENSSMRG00000022674) ENSSMRG00000022673 ENSSMRG00000022672 STRA6 (ENSSMRG00000022671) ISLR (ENSSMRG00000022670) ISLR2 (ENSSMRG00000022669) ENSSMRG00000022667 ENSSMRG00000022666 MYZAP (ENSSMRG00000022665) POLR2M (ENSSMRG00000022664) ALDH1A2 (ENSSMRG00000022663) AQP9 (ENSSMRG00000022662) LIPC (ENSSMRG00000022661) Common wall lizard MODERN SPECIES 17 ENSPMRG00000018920 IREB2 (ENSPMRG00000018903) MAN2C1 (ENSPMRG00000018612) NEIL1 (ENSPMRG00000018525) COMMD4 (ENSPMRG00000018518) ENSPMRG00000018511 ENSPMRG00000018497 STOML1 (ENSPMRG00000018476) ENSPMRG00000018466 ISLR2 (ENSPMRG00000018458) ENSPMRG00000018448 CYP11A1 (ENSPMRG00000018435) SEMA7A (ENSPMRG00000018422) UBL7 (ENSPMRG00000018411) ENSPMRG00000018407 ENSPMRG00000018403 ##22 ARID3B (ENSPMRG00000018388) ENSPMRG00000018376 CLK3 (ENSPMRG00000018366) EDC3 (ENSPMRG00000018354) ENSPMRG00000018348 ENSPMRG00000018341 COX5A (ENSPMRG00000018327) FAM219B (ENSPMRG00000018315) MPI (ENSPMRG00000018299) SCAMP2 (ENSPMRG00000018290) ULK3 (ENSPMRG00000018278) CPLX3 (ENSPMRG00000018268) CSK (ENSPMRG00000018260) FKBP4 (ENSPMRG00000018256) ITFG2 (ENSPMRG00000018249) tuatara MODERN SPECIES 1605 INTS14 (ENSSPUG00000009616) HACD3 (ENSSPUG00000009636) DPP8 (ENSSPUG00000009654) IGDCC4 (ENSSPUG00000009684) IGDCC3 (ENSSPUG00000009723) ENSSPUG00000009766 ##22 PARP16 (ENSSPUG00000009787) GNRHR (ENSSPUG00000009801) ENSSPUG00000009869 RASL12 (ENSSPUG00000009991) UBAP1L (ENSSPUG00000010040) PDCD7 (ENSSPUG00000010062) CLPX (ENSSPUG00000010113) SPG21 (ENSSPUG00000010154) ANKDD1A (ENSSPUG00000010169) PLEKHO2 (ENSSPUG00000010218) PCSK6 (ENSSPUG00000010521) SNRPA1 (ENSSPUG00000010899) SELENOS (ENSSPUG00000010909) CHSY1 (ENSSPUG00000010922) LRRK1 (ENSSPUG00000010954) Actinopterygii ANCESTRAL SPECIES 1114 ENSGT00950000182960.b ##22 ENSGT00940000167032 Reedfish DUPLICATION Reedfish DUPLICATION Reedfish MODERN SPECIES 16 vkorc1l1 (ENSECRG00000016871) nupr1a (ENSECRG00000016890) MTMR4 (ENSECRG00000016928) hpda (ENSECRG00000017044) ENSECRG00000017205 ENSECRG00000017279 supt4h1 (ENSECRG00000017339) ENSECRG00000017409 ENSECRG00000017611 ywhag1 (ENSECRG00000018164) hspb1 (ENSECRG00000018180) SRRM3 (ENSECRG00000018204) mpx (ENSECRG00000018252) ENSECRG00000018301 ENSECRG00000018330 ENSECRG00000018364 ##22 ENSECRG00000018382 ##22 ENSECRG00000018405 ENSECRG00000018445 rpain (ENSECRG00000018481) c1qbp (ENSECRG00000018496) dhx33 (ENSECRG00000018515) camkk1a (ENSECRG00000018554) p2rx1 (ENSECRG00000018633) ATP2A3 (ENSECRG00000018836) ZZEF1 (ENSECRG00000020773) ENSECRG00000020861 ENSECRG00000020872 cyb5d2 (ENSECRG00000020888) ENSECRG00000004634 tmem120ab (ENSECRG00000004643) Reedfish MODERN SPECIES 16 porb (ENSECRG00000004667) tmem120ab (ENSECRG00000004643) ENSECRG00000004634 cyb5d2 (ENSECRG00000020888) ENSECRG00000020872 ENSECRG00000020861 ZZEF1 (ENSECRG00000020773) ATP2A3 (ENSECRG00000018836) p2rx1 (ENSECRG00000018633) camkk1a (ENSECRG00000018554) dhx33 (ENSECRG00000018515) c1qbp (ENSECRG00000018496) rpain (ENSECRG00000018481) ENSECRG00000018445 ENSECRG00000018405 ENSECRG00000018382 ##22 ENSECRG00000018364 ##22 ENSECRG00000018330 ENSECRG00000018301 mpx (ENSECRG00000018252) SRRM3 (ENSECRG00000018204) hspb1 (ENSECRG00000018180) ywhag1 (ENSECRG00000018164) ENSECRG00000017611 ENSECRG00000017409 supt4h1 (ENSECRG00000017339) ENSECRG00000017279 ENSECRG00000017205 hpda (ENSECRG00000017044) MTMR4 (ENSECRG00000016928) nupr1a (ENSECRG00000016890) Reedfish DUPLICATION Reedfish MODERN SPECIES 6 TTC7A (ENSECRG00000018493) ENSECRG00000018572 ENSECRG00000018599 ENSECRG00000018748 ENSECRG00000019483 epcam (ENSECRG00000019533) msh2 (ENSECRG00000019592) KCNK12 (ENSECRG00000019639) ENSECRG00000019652 mcfd2 (ENSECRG00000019661) ENSECRG00000019680 SOCS5 (ENSECRG00000019700) gch2 (ENSECRG00000019713) ENSECRG00000019725 ENSECRG00000019743 ENSECRG00000019757 ##22 ENSECRG00000019784 DACT2 (ENSECRG00000019838) SMOC2 (ENSECRG00000019864) THBS2 (ENSECRG00000019953) ENSECRG00000020017 ENSECRG00000020041 ENSECRG00000020052 ENSECRG00000020082 psme4b (ENSECRG00000020210) ENSECRG00000020492 GPR75 (ENSECRG00000020497) erlec1 (ENSECRG00000020509) sft2d1 (ENSECRG00000020525) PRR18 (ENSECRG00000020536) TBXT (ENSECRG00000020538) Reedfish MODERN SPECIES 6 ENSECRG00000017084 ACYP2 (ENSECRG00000017070) ENSECRG00000017043 SLC30A6 (ENSECRG00000017001) MARK1 (ENSECRG00000016901) mrpl57 (ENSECRG00000016852) ENSECRG00000016222 TRAF5 (ENSECRG00000016179) rcor3 (ENSECRG00000016101) KCNH1 (ENSECRG00000015774) hhat (ENSECRG00000015287) ENSECRG00000015128 ENSECRG00000015057 ENSECRG00000014987 slc22a7a (ENSECRG00000014814) ENSECRG00000014683 ##22 ENSECRG00000014668 atl3 (ENSECRG00000014627) ENSECRG00000014585 ENSECRG00000017550 #22 ENSECRG00000017534 ENSECRG00000017522 ENSECRG00000017502 ENSECRG00000017487 ENSECRG00000017469 cript (ENSECRG00000017433) pigf (ENSECRG00000017397) rhoq (ENSECRG00000017378) epas1b (ENSECRG00000017335) PRKCE (ENSECRG00000017293) SRBD1 (ENSECRG00000017244) Neopterygii ANCESTRAL SPECIES 899 ENSGT00950000182960.b ##22 ENSGT00940000167032 Osteoglossocephalai ANCESTRAL SPECIES 1127 ENSGT00950000182960.b ##22 ENSGT00940000167032 Clupeocephala ANCESTRAL SPECIES 991 ENSGT00950000182960.b ##22 ENSGT00940000167032 Euteleosteomorpha ANCESTRAL SPECIES 755 ENSGT00950000182960.b ##22 ENSGT00940000167032 Acanthomorphata ANCESTRAL SPECIES 720 ENSGT00950000182960.b ##22 ENSGT00940000167032 Cod MODERN SPECIES 15 ENSGMOG00000014196 actr3b (ENSGMOG00000002876) XRCC2 (ENSGMOG00000030367) KMT2C (ENSGMOG00000032418) galnt11 (ENSGMOG00000011270) ENSGMOG00000001817 zic4 (ENSGMOG00000027121) zic1 (ENSGMOG00000001788) AGTR1 (ENSGMOG00000026261) cpb1 (ENSGMOG00000001752) gyg1b (ENSGMOG00000001733) bdh1 (ENSGMOG00000001721) ENSGMOG00000024071 slc35g2b (ENSGMOG00000019967) ENSGMOG00000028987 ENSGMOG00000001587 ##22 ENSGMOG00000001440 csrnp1b (ENSGMOG00000026143) ENSGMOG00000023684 slc22a13b (ENSGMOG00000001379) slc22a13b (ENSGMOG00000015289) ENSGMOG00000025187 ENSGMOG00000036815 NRN1 (ENSGMOG00000035624) fars2 (ENSGMOG00000015750) ENSGMOG00000017921 ENSGMOG00000026283 cyb5a (ENSGMOG00000017931) ENSGMOG00000030936 dipk1c (ENSGMOG00000009676) tubb6 (ENSGMOG00000007552) Euacanthomorphacea ANCESTRAL SPECIES 456 ENSGT00950000182960.b ##22 ENSGT00940000167032 Percomorphaceae ANCESTRAL SPECIES 389 ENSGT00950000182960.b ##22 ENSGT00940000167032 Percomorphaceae_B ANCESTRAL SPECIES 194 ENSGT00950000182960.b ##22 ENSGT00940000167032 Ovalentaria ANCESTRAL SPECIES 217 ENSGT00950000182960.b ##22 ENSGT00940000167032 Atherinomorphae ANCESTRAL SPECIES 239 ENSGT00950000182960.b ##22 ENSGT00940000167032 Cyprinodontiformes ANCESTRAL SPECIES 108 ENSGT00950000182960.b ##22 ENSGT00940000167032 ENSGT01100000263483.D.d.a.a.a.b.a ENSGT00940000164100.A.c.a.d.a.a.a.b.b.b.b Cyprinodontoidei ANCESTRAL SPECIES ENSGT00950000182960.b ##22 NAME_4 ANCESTRAL SPECIES ENSGT00950000182960.b ##22 Sheepshead minnow MODERN SPECIES 211 ppm1aa (ENSCVAG00000007554) six6a (ENSCVAG00000007558) six1b (ENSCVAG00000007565) six4a (ENSCVAG00000007591) mnat1 (ENSCVAG00000007604) trmt5 (ENSCVAG00000007630) slc38a6 (ENSCVAG00000007643) MFSD2A (ENSCVAG00000007681) ENSCVAG00000007691 ENSCVAG00000007707 ENSCVAG00000007715 ENSCVAG00000007725 ENSCVAG00000007733 ENSCVAG00000007737 ENSCVAG00000007793 ENSCVAG00000007799 ##22 ENSCVAG00000007806 ##22 ENSCVAG00000007827 ENSCVAG00000007898 ENSCVAG00000007906 ENSCVAG00000007919 ENSCVAG00000007929 CCN3 (ENSCVAG00000007933) scgn (ENSCVAG00000008001) CARMIL1 (ENSCVAG00000008107) ENSCVAG00000008140 ADCY2 (ENSCVAG00000008423) TENT4A (ENSCVAG00000008463) ENSCVAG00000008487 ADAMTS16 (ENSCVAG00000008587) irx1a (ENSCVAG00000008606) Aplocheiloidei ANCESTRAL SPECIES 358 ENSGT00950000182960.b ##22 ENSGT00940000167032 ENSGT01100000263483.D.d.a.a.a.b.a ENSGT00940000164100.A.c.a.d.a.a.a.b.b.b.b Mangrove rivulus MODERN SPECIES 189 PPIC (ENSKMAG00000010312) SNX2 (ENSKMAG00000010366) ENSKMAG00000010469 ENSKMAG00000010488 ENSKMAG00000010501 sncaip (ENSKMAG00000010522) ENSKMAG00000010545 ENSKMAG00000010591 ENSKMAG00000010663 ENSKMAG00000010669 ENSKMAG00000010680 ENSKMAG00000010694 ENSKMAG00000010714 ENSKMAG00000010738 ##22 ENSKMAG00000010779 ENSKMAG00000010796 ##22 ENSKMAG00000010820 ENSKMAG00000010832 ENSKMAG00000010851 ENSKMAG00000010882 ENSKMAG00000010997 ENSKMAG00000011012 ENSKMAG00000011025 ENSKMAG00000011036 pik3r1 (ENSKMAG00000011062) ENSKMAG00000011118 ENSKMAG00000011131 srp19 (ENSKMAG00000011155) ENSKMAG00000011190 ENSKMAG00000011242 ENSKMAG00000011271 Percomorphaceae_C ANCESTRAL SPECIES 185 ENSGT00950000182960.b ##22 ENSGT00940000167032 Percomorphaceae_D ANCESTRAL SPECIES 142 ENSGT00950000182960.b ##22 ENSGT00940000167032 Anabantaria ANCESTRAL SPECIES 135 ENSGT00950000182960.b ##22 ENSGT00940000167032 Anabantoidei ANCESTRAL SPECIES 128 ENSGT00950000182960.b ##22 ENSGT00940000167032 Climbing perch MODERN SPECIES 22 ENSATEG00000027413 ENSATEG00000025792 ##22 ENSATEG00000025922 ENSATEG00000026099 ENSATEG00000027327 ENSATEG00000028380 ENSATEG00000012080 ENSATEG00000012086 ENSATEG00000026403 ENSATEG00000012163 ENSATEG00000012135 ENSATEG00000012144 ENSATEG00000011994 ##22 ENSATEG00000012201 ##22 ENSATEG00000027381 ##22 ENSATEG00000012250 ##22 ENSATEG00000012313 ENSATEG00000012423 ENSATEG00000012439 ENSATEG00000012442 ENSATEG00000028289 ENSATEG00000012492 ENSATEG00000012562 ENSATEG00000012588 ENSATEG00000012604 ENSATEG00000012637 ENSATEG00000029749 ENSATEG00000012689 ENSATEG00000012742 ENSATEG00000012747 ENSATEG00000025247 Ecdysozoa ANCESTRAL SPECIES ENSGT00950000182960 #22 Caenorhabditis elegans DUPLICATION Caenorhabditis elegans DUPLICATION Caenorhabditis elegans DUPLICATION Caenorhabditis elegans DUPLICATION Caenorhabditis elegans MODERN SPECIES 5 jmjd-5 (WBGene00007387) C06H2.2 (WBGene00007386) lmtr-3 (WBGene00007390) atp-5 (WBGene00007385) mboa-2 (WBGene00010408) scb-1 (WBGene00010407) math-33 (WBGene00010406) erfa-3 (WBGene00010405) Y42A5A.5 (WBGene00012780) cdkl-1 (WBGene00012779) Y42A5A.3 (WBGene00012778) lact-8 (WBGene00012777) Y42A5A.1 (WBGene00012776) act-1 (WBGene00000063) #22 act-2 (WBGene00000064) #22 act-3 (WBGene00000065) #22 T04C12.8 (WBGene00011430) nlp-80 (WBGene00011428) T04C12.9 (WBGene00050889) T04C12.11 (WBGene00077693) T04C12.1 (WBGene00011427) srh-75 (WBGene00005296) T04C12.7 (WBGene00011429) T04C12.33 (WBGene00271444) srh-74 (WBGene00005295) dhs-18 (WBGene00000981) C45B11.6 (WBGene00045379) C45B11.2 (WBGene00008105) C45B11.5 (WBGene00008106) C45B11.8 (WBGene00077699) C45B11.9 (WBGene00185117) Caenorhabditis elegans MODERN SPECIES 5 C45B11.5 (WBGene00008106) C45B11.2 (WBGene00008105) C45B11.6 (WBGene00045379) dhs-18 (WBGene00000981) srh-74 (WBGene00005295) T04C12.33 (WBGene00271444) T04C12.7 (WBGene00011429) srh-75 (WBGene00005296) T04C12.1 (WBGene00011427) T04C12.11 (WBGene00077693) T04C12.9 (WBGene00050889) nlp-80 (WBGene00011428) T04C12.8 (WBGene00011430) act-3 (WBGene00000065) #22 act-2 (WBGene00000064) #22 act-1 (WBGene00000063) #22 Y42A5A.1 (WBGene00012776) lact-8 (WBGene00012777) Y42A5A.3 (WBGene00012778) cdkl-1 (WBGene00012779) Y42A5A.5 (WBGene00012780) erfa-3 (WBGene00010405) math-33 (WBGene00010406) scb-1 (WBGene00010407) mboa-2 (WBGene00010408) atp-5 (WBGene00007385) lmtr-3 (WBGene00007390) C06H2.2 (WBGene00007386) jmjd-5 (WBGene00007387) glb-3 (WBGene00007389) folt-1 (WBGene00007388) Caenorhabditis elegans MODERN SPECIES 5 glb-3 (WBGene00007389) jmjd-5 (WBGene00007387) C06H2.2 (WBGene00007386) lmtr-3 (WBGene00007390) atp-5 (WBGene00007385) mboa-2 (WBGene00010408) scb-1 (WBGene00010407) math-33 (WBGene00010406) erfa-3 (WBGene00010405) Y42A5A.5 (WBGene00012780) cdkl-1 (WBGene00012779) Y42A5A.3 (WBGene00012778) lact-8 (WBGene00012777) Y42A5A.1 (WBGene00012776) act-1 (WBGene00000063) #22 act-2 (WBGene00000064) #22 act-3 (WBGene00000065) #22 T04C12.8 (WBGene00011430) nlp-80 (WBGene00011428) T04C12.9 (WBGene00050889) T04C12.11 (WBGene00077693) T04C12.1 (WBGene00011427) srh-75 (WBGene00005296) T04C12.7 (WBGene00011429) T04C12.33 (WBGene00271444) srh-74 (WBGene00005295) dhs-18 (WBGene00000981) C45B11.6 (WBGene00045379) C45B11.2 (WBGene00008105) C45B11.5 (WBGene00008106) C45B11.8 (WBGene00077699) Caenorhabditis elegans MODERN SPECIES 6 R08E3.1 (WBGene00019957) F39C12.1 (WBGene00018193) add-1 (WBGene00000072) ntc-1 (WBGene00044568) tsp-14 (WBGene00006640) arrd-23 (WBGene00020323) T07F12.2 (WBGene00020322) T07F12.1 (WBGene00020321) T07F12.4 (WBGene00020324) K05B2.2 (WBGene00019403) ifa-4 (WBGene00002052) K05B2.4 (WBGene00019404) mct-4 (WBGene00003986) tyra-3 (WBGene00006475) M03F4.4 (WBGene00019758) act-4 (WBGene00000066) #22 M03F4.6 (WBGene00019759) calu-1 (WBGene00019760) ZC8.6 (WBGene00022501) lfi-1 (WBGene00022500) set-30 (WBGene00022499) hsd-2 (WBGene00022498) hsd-3 (WBGene00022616) ZC449.7 (WBGene00045365) ZC449.8 (WBGene00195189) sek-3 (WBGene00022613) ZC449.2 (WBGene00022612) ZC449.1 (WBGene00022611) ZC449.4 (WBGene00022614) ZC449.5 (WBGene00022615) Y64H9A.2 (WBGene00022024) Caenorhabditis elegans MODERN SPECIES 2 sid-2 (WBGene00004796) dyf-2 (WBGene00001118) aqp-11 (WBGene00000179) flp-15 (WBGene00001458) set-16 (WBGene00011729) drr-2 (WBGene00011730) T12D8.10 (WBGene00023450) acbp-5 (WBGene00011731) arrd-17 (WBGene00011732) T12D8.5 (WBGene00011733) taf-9 (WBGene00006391) mlc-5 (WBGene00011734) T12D8.9 (WBGene00011736) hip-1 (WBGene00011735) shpk-1 (WBGene00012017) act-5 (WBGene00000067) #22 T05D4.5 (WBGene00011478) osm-7 (WBGene00003887) exc-12 (WBGene00011476) aldo-1 (WBGene00011474) T05D4.2 (WBGene00011475) scav-2 (WBGene00013578) Y76A2B.5 (WBGene00013577) Y76A2B.4 (WBGene00013576) acs-5 (WBGene00013575) lron-13 (WBGene00013574) pod-1 (WBGene00004075) mlh-1 (WBGene00003373) T28A8.3 (WBGene00012109) T28A8.4 (WBGene00012110) T28A8.8 (WBGene00194852) Fruitfly DUPLICATION Fruitfly DUPLICATION Fruitfly MODERN SPECIES 26 CG15767 (FBgn0029809) CG12239 (FBgn0029810) Cpr5C (FBgn0029811) Prosbeta2R1 (FBgn0029812) CG44329 (FBgn0265417) AgmNAT (FBgn0029813) CG15765 (FBgn0029814) CG12729 (FBgn0029816) CG43136 (FBgn0262610) CG43137 (FBgn0262611) CG15764 (FBgn0029817) GAA1 (FBgn0029818) mof (FBgn0014340) Usp30 (FBgn0029819) CG16721 (FBgn0029820) Act5C (FBgn0000042) #22 CG4020 (FBgn0029821) CG12236 (FBgn0029822) Shmt (FBgn0029823) CG3726 (FBgn0029824) CG12728 (FBgn0029825) CG32756 (FBgn0052756) CG6041 (FBgn0029826) CG32755 (FBgn0052755) CG6048 (FBgn0029827) CG6067 (FBgn0029828) fs(1)M3 (FBgn0005390) Grip (FBgn0029830) CG5966 (FBgn0029831) CG4766 (FBgn0027546) mab-21 (FBgn0029003) Fruitfly MODERN SPECIES 17 CG14589 (FBgn0033063) EcR (FBgn0000546) Ars2 (FBgn0033062) SmydA-5 (FBgn0033061) CG7849 (FBgn0033060) l(2)k09848 (FBgn0284246) CG7856 (FBgn0033056) CCHa2-R (FBgn0033058) CG34212 (FBgn0085241) CG34211 (FBgn0085240) Tbce (FBgn0033055) CG14591 (FBgn0033054) SCAP (FBgn0033052) Strica (FBgn0033051) Pngl (FBgn0033050) Act42A (FBgn0000043) #22 Src42A (FBgn0264959) mle (FBgn0002774) BubR1 (FBgn0263855) CG7881 (FBgn0033048) CG7882 (FBgn0033047) CG43366 (FBgn0263109) CG44438 (FBgn0265631) dpr12 (FBgn0085414) Or42b (FBgn0033043) Tsp42A (FBgn0033042) Or42a (FBgn0033041) ZnT41F (FBgn0025693) Gp210 (FBgn0266580) CG7791 (FBgn0033038) CG34200 (FBgn0085229) Fruitfly MODERN SPECIES 17 CG34458 (FBgn0085487) Pgant9 (FBgn0050463) Idgf6 (FBgn0013763) Sfp53D (FBgn0259967) CG15617 (FBgn0034151) Acp53C14a (FBgn0034152) Acp53C14b (FBgn0034153) Acp53Ea (FBgn0015584) Acp53C14c (FBgn0053530) unc-104 (FBgn0267002) CG34189 (FBgn0085218) CG5267 (FBgn0034154) CG42392 (FBgn0259738) CG5348 (FBgn0034156) Sod2 (FBgn0010213) Arp53D (FBgn0011743) #22 Vkor (FBgn0053544) resilin (FBgn0034157) RalGPS (FBgn0034158) CG15919 (FBgn0040743) CG15615 (FBgn0034159) CG5550 (FBgn0034160) CG34459 (FBgn0085488) CG34460 (FBgn0085489) Ugt37C1 (FBgn0026754) IntS8 (FBgn0025830) Fen1 (FBgn0025832) Dek (FBgn0026533) Psi (FBgn0014870) eEF1beta (FBgn0028737) CG6426 (FBgn0034162) Yeast MODERN SPECIES 7 STE2 (YFL026W) GYP8 (YFL027C) CAF16 (YFL028C) CAK1 (YFL029C) AGX1 (YFL030W) YFL031C-A HAC1 (YFL031W) YFL032W RIM15 (YFL033C) MIL1 (YFL034W) RPL22B (YFL034C-A) MOB2 (YFL034C-B) RPO41 (YFL036W) TUB2 (YFL037W) YPT1 (YFL038C) ACT1 (YFL039C) #22 YFL040W FET5 (YFL041W) YFL041W-A YFL042C OTU1 (YFL044C) SEC53 (YFL045C) FMP32 (YFL046W) RGD2 (YFL047W) EMP47 (YFL048C) SWP82 (YFL049W) ALR2 (YFL050C) YFL051C YFL052W DAK2 (YFL053W) AQY3 (YFL054C)