Pecora ANCESTRAL SPECIES 5 ENSGT00940000156689 ENSGT00940000155853 #7 ENSGT00950000182858.B.b.a #8 ENSGT00950000182858.B.b.b #9 ENSGT00950000182858.B.a.d #10 ENSGT00940000161652 ENSGT00940000154030.a.b #13 ENSGT00390000013670 #14 ENSGT00940000157701 #15 ENSGT00940000156464 #16 ENSGT00940000156714 #17 ENSGT01030000234564.a.a.a.a.b #18 ENSGT00940000155623 #19 ENSGT00390000003990.k #20 ENSGT00940000155699 #21 ENSGT00390000008069 #22 ENSGT00940000155443 #23 ENSGT01090000260040.b.b.b.b.a.a #24 ENSGT00440000033827 #25 ENSGT00940000157612 #26 ENSGT00940000155982 #27 ENSGT00390000016845 #28 ENSGT00390000013305.a.a #29 ENSGT00940000154645.A #30 ENSGT00950000182995.e.a.a.a.fb.a #31 ENSGT00390000007900 #32 ENSGT00390000004263.b #33 ENSGT00940000155646 #34 ENSGT00940000160213 #35 ENSGT00940000154459.B #36 ENSGT00940000153916.B #37 Percora_a ANCESTRAL SPECIES 13 ENSGT00390000008938 ENSGT00940000156689 ENSGT00940000155853 #7 ENSGT00950000182858.B.b.a #8 ENSGT00950000182858.B.b.b #9 ENSGT00950000182858.B.a.d #10 ENSGT00990000204082 ENSGT00390000013670 #14 ENSGT00940000157701 #15 ENSGT00940000156464 #16 ENSGT00940000156714 #17 ENSGT01030000234564.a.a.a.a.b #18 ENSGT00940000155623 #19 ENSGT00390000003990.k #20 ENSGT00940000155699 #21 ENSGT00390000008069 #22 ENSGT00940000155443 #23 ENSGT01090000260040.b.b.b.b.a.a #24 ENSGT00440000033827 #25 ENSGT00940000157612 #26 ENSGT00940000155982 #27 ENSGT00390000016845 #28 ENSGT00390000013305.a.a #29 ENSGT00940000154645.A #30 ENSGT00950000182995.e.a.a.a.fb.a #31 ENSGT00390000007900 #32 ENSGT00390000004263.b #33 ENSGT00940000155646 #34 ENSGT00940000160213 #35 ENSGT00940000154459.B #36 ENSGT00940000153916.B #37 Bovidae ANCESTRAL SPECIES 5 ENSGT00940000156689 ENSGT00940000155853 #7 ENSGT00950000182858.B.b.a #8 ENSGT00950000182858.B.b.b #9 ENSGT00950000182858.B.a.d #10 ENSGT00940000161652 ENSGT00940000154030.a.b #13 ENSGT00390000013670 #14 ENSGT00940000157701 #15 ENSGT00940000156464 #16 ENSGT00940000156714 #17 ENSGT01030000234564.a.a.a.a.b #18 ENSGT00940000155623 #19 ENSGT00390000003990.k #20 ENSGT00940000155699 #21 ENSGT00390000008069 #22 ENSGT00940000155443 #23 ENSGT01090000260040.b.b.b.b.a.a #24 ENSGT00440000033827 #25 ENSGT00940000157612 #26 ENSGT00940000155982 #27 ENSGT00390000016845 #28 ENSGT00390000013305.a.a #29 ENSGT00940000154645.A #30 ENSGT00950000182995.e.a.a.a.fb.a #31 ENSGT00390000007900 #32 ENSGT00390000004263.b #33 ENSGT00940000155646 #34 ENSGT00940000160213 #35 ENSGT00940000154459.B #36 ENSGT00940000153916.B #37 Caprinae ANCESTRAL SPECIES 9 ENSGT00940000155853 #7 ENSGT00950000182858.B.b.a #8 ENSGT00950000182858.B.b.b #9 ENSGT00950000182858.B.a.d #10 ENSGT00940000154706.ib #11 ENSGT00940000161652 ENSGT00940000154030.a.b #13 ENSGT00390000013670 #14 ENSGT00940000157701 #15 ENSGT00940000156464.a #16 ENSGT00940000156714 #17 ENSGT01030000234564.a.a.a.a.b #18 ENSGT00940000155623 #19 ENSGT00390000003990.k #20 ENSGT00940000155699.d #21 ENSGT00390000008069 #22 ENSGT00940000155443 #23 ENSGT01090000260040.b.b.b.b.a.a #24 ENSGT00440000033827 #25 ENSGT00940000157612 #26 ENSGT00940000155982 #27 ENSGT00390000016845 #28 ENSGT00390000013305.a.a #29 ENSGT00940000154645.A #30 ENSGT00950000182995.e.a.a.a.fb.a.a #31 ENSGT00390000007900 #32 ENSGT00390000004263.b #33 ENSGT00940000155646 #34 ENSGT00940000160213 #35 ENSGT00940000154459.B #36 ENSGT00940000153916.B #37 Rambouillet Sheep MODERN SPECIES 19 DAB2IP (ENSOARG00020014930) #7 ENSOARG00020015864 #8 ENSOARG00020016051 #9 ENSOARG00020016131 #10 ENSOARG00020006554 #11 ENSOARG00020006589 #12 CMPK2 (ENSOARG00020006720) #13 ENSOARG00020006787 #14 RNF144A (ENSOARG00020006856) #15 ID2 (ENSOARG00020006940) #16 KIDINS220 (ENSOARG00020007030) #17 MBOAT2 (ENSOARG00020007653) #18 ASAP2 (ENSOARG00020007758) #19 ITGB1BP1 (ENSOARG00020008178) #20 CPSF3 (ENSOARG00020008301) #21 IAH1 (ENSOARG00020008401) #22 ADAM17 (ENSOARG00020008512) #23 YWHAQ (ENSOARG00020008682) #24 TAF1B (ENSOARG00020008727) #25 GRHL1 (ENSOARG00020008773) #26 KLF11 (ENSOARG00020008965) #27 CYS1 (ENSOARG00020009035) #28 ENSOARG00020009097 #29 HPCAL1 (ENSOARG00020009151) #30 ODC1 (ENSOARG00020009225) #31 NOL10 (ENSOARG00020009305) #32 ATP6V1C2 (ENSOARG00020009600) #33 PDIA6 (ENSOARG00020009823) #34 KCNF1 (ENSOARG00020010045) #35 C2orf50 (ENSOARG00020010067) #36 SLC66A3 (ENSOARG00020010159) #37 Goat MODERN SPECIES 2 ENSCHIG00000009248 #9 ENSCHIG00000023895 #10 ENSCHIG00000021333 #11 ENSCHIG00000014881 SOX11 (ENSCHIG00000024868) CMPK2 (ENSCHIG00000012790) #13 RSAD2 (ENSCHIG00000021832) #14 RNF144A (ENSCHIG00000016336) #15 ENSCHIG00000018361 #16 KIDINS220 (ENSCHIG00000026710) #17 MBOAT2 (ENSCHIG00000026251) #18 ENSCHIG00000012410 ASAP2 (ENSCHIG00000022796) #19 ENSCHIG00000020028 #20 CPSF3 (ENSCHIG00000013973) #21 IAH1 (ENSCHIG00000016467) #22 ADAM17 (ENSCHIG00000013595) #23 YWHAQ (ENSCHIG00000012589) #24 ENSCHIG00000012158 TAF1B (ENSCHIG00000013783) #25 ENSCHIG00000026755 #26 KLF11 (ENSCHIG00000011294) #27 CYS1 (ENSCHIG00000018115) #28 ENSCHIG00000004531 RRM2 (ENSCHIG00000009694) #29 HPCAL1 (ENSCHIG00000019475) #30 ENSCHIG00000027003 #31 NOL10 (ENSCHIG00000012935) #32 ATP6V1C2 (ENSCHIG00000017272) #33 PDIA6 (ENSCHIG00000007838) #34 KCNF1 (ENSCHIG00000012739) #35 Bovinae ANCESTRAL SPECIES 4 ENSGT00390000008938 ENSGT00940000156689 ENSGT00940000155853 #7 ENSGT00950000182858.B.b.a.e #8 ENSGT00950000182858.B.b.b #9 ENSGT00950000182858.B.a.d #10 ENSGT00990000204082 ENSGT00390000013670 #14 ENSGT00940000157701 #15 ENSGT00940000156464 #16 ENSGT00940000156714 #17 ENSGT01030000234564.a.a.a.a.b #18 ENSGT00940000155623 #19 ENSGT00390000003990.k #20 ENSGT00940000155699 #21 ENSGT00390000008069 #22 ENSGT00940000155443 #23 ENSGT01090000260040.b.b.b.b.a.a #24 ENSGT00440000033827 #25 ENSGT00940000157612 #26 ENSGT00940000155982 #27 ENSGT00390000016845 #28 ENSGT00390000013305.a.a #29 ENSGT00940000154645.A #30 ENSGT00950000182995.e.a.a.a.fb.a #31 ENSGT00390000007900 #32 ENSGT00390000004263.b #33 ENSGT00940000155646 #34 ENSGT00940000160213 #35 ENSGT00940000154459.B #36 ENSGT00940000153916.B #37 Bos ANCESTRAL SPECIES 5 ENSGT00390000008938 ENSGT00940000156689 ENSGT00940000155853 #7 ENSGT00950000182858.B.b.a.e #8 ENSGT00950000182858.B.b.b #9 ENSGT00950000182858.B.a.d #10 ENSGT00990000204082 ENSGT00390000013670 #14 ENSGT00940000157701 #15 ENSGT00940000156464 #16 ENSGT00940000156714 #17 ENSGT01030000234564.a.a.a.a.b #18 ENSGT00940000155623 #19 ENSGT00390000003990.k #20 ENSGT00940000155699 #21 ENSGT00390000008069 #22 ENSGT00940000155443 #23 ENSGT01090000260040.b.b.b.b.b ##24 ENSGT01100000263481.n.a.a.a.a.a.a.a.a.a.a.a.b ENSGT00440000033827 #25 ENSGT00940000157612 #26 ENSGT00940000155982 #27 ENSGT00390000016845 #28 ENSGT00390000013305.a.a #29 ENSGT00940000154645.A #30 ENSGT00950000182995.e.a.a.a.fb.a #31 ENSGT00390000007900 #32 ENSGT01100000263480.a.a.b.a.a.a.b.a.a.a.a.a.a.a.a.a ENSGT00390000004263.b #33 ENSGT00940000155646.c #34 ENSGT00940000160213 #35 Bos_b ANCESTRAL SPECIES 16 ENSGT00940000156689 ENSGT00940000155853 #7 ENSGT00950000182858.B.b.a.e #8 ENSGT00950000182858.B.b.b #9 ENSGT00950000182858.B.a.d #10 ENSGT00940000161652 ENSGT00940000154030.a.b #13 ENSGT00390000013670 #14 ENSGT00940000157701 #15 ENSGT00940000156464 #16 ENSGT00940000156714 #17 ENSGT01030000234564.a.a.a.a.b #18 ENSGT00940000155623 #19 ENSGT00390000003990.k #20 ENSGT00940000155699 #21 ENSGT00390000008069 #22 ENSGT00940000155443 #23 ENSGT01090000260040.b.b.b.b.b ##24 ENSGT01100000263481.n.a.a.a.a.a.a.a.a.a.a.a.b ENSGT00440000033827 #25 ENSGT00940000157612 #26 ENSGT00940000155982 #27 ENSGT00390000016845 #28 ENSGT00390000013305.a.a #29 ENSGT00940000154645.A #30 ENSGT00950000182995.e.a.a.a.fb.a #31 ENSGT00390000007900 #32 ENSGT01100000263480.a.a.b.a.a.a.b.a.a.a.a.a.a.a.a.a ENSGT00390000004263.b #33 ENSGT00940000155646.c #34 ENSGT00940000160213 #35 Cow MODERN SPECIES 2 GGTA1 (ENSBTAG00000012090) #8 ENSBTAG00000039186 #9 ENSBTAG00000039201 #10 SOX11 (ENSBTAG00000050114) ENSBTAG00000051441 CMPK2 (ENSBTAG00000019979) #13 RSAD2 (ENSBTAG00000016061) #14 RNF144A (ENSBTAG00000044064) #15 ENSBTAG00000037793 ID2 (ENSBTAG00000021187) #16 KIDINS220 (ENSBTAG00000007963) #17 MBOAT2 (ENSBTAG00000008160) #18 ASAP2 (ENSBTAG00000002329) #19 ITGB1BP1 (ENSBTAG00000013063) #20 CPSF3 (ENSBTAG00000019735) #21 IAH1 (ENSBTAG00000001140) #22 ADAM17 (ENSBTAG00000001141) #23 YWHAQ (ENSBTAG00000002108) ##24 ENSBTAG00000048394 TAF1B (ENSBTAG00000007543) #25 GRHL1 (ENSBTAG00000007485) #26 KLF11 (ENSBTAG00000046218) #27 CYS1 (ENSBTAG00000052669) #28 RRM2 (ENSBTAG00000008216) #29 HPCAL1 (ENSBTAG00000004259) #30 ODC1 (ENSBTAG00000004256) #31 NOL10 (ENSBTAG00000002716) #32 ATP6V1C2 (ENSBTAG00000001927) #33 PDIA6 (ENSBTAG00000001928) #34 KCNF1 (ENSBTAG00000021283) #35 C11H2orf50 (ENSBTAG00000001903) #36 Hybrid Bos Indicus MODERN SPECIES 2 TTLL11 (ENSBIXG00005003298) DAB2IP (ENSBIXG00005005534) #7 ENSBIXG00005020351 #8 ENSBIXG00005020391 ENSBIXG00005020418 #9 SOX11 (ENSBIXG00005020448) CMPK2 (ENSBIXG00005003470) #13 RSAD2 (ENSBIXG00005020552) #14 RNF144A (ENSBIXG00005020588) #15 ID2 (ENSBIXG00005020723) #16 KIDINS220 (ENSBIXG00005021201) #17 MBOAT2 (ENSBIXG00005021383) #18 ASAP2 (ENSBIXG00005021521) #19 ITGB1BP1 (ENSBIXG00005021598) #20 CPSF3 (ENSBIXG00005003653) #21 IAH1 (ENSBIXG00005021763) #22 ADAM17 (ENSBIXG00005002613) #23 YWHAQ (ENSBIXG00005021830) #24 ENSBIXG00005021842 TAF1B (ENSBIXG00005021864) #25 GRHL1 (ENSBIXG00005003698) #26 KLF11 (ENSBIXG00005021989) #27 ENSBIXG00005003712 #28 RRM2 (ENSBIXG00005022029) #29 HPCAL1 (ENSBIXG00005006887) #30 ENSBIXG00005022099 #31 NOL10 (ENSBIXG00005022242) #32 ENSBIXG00005022288 ENSBIXG00005007375 #33 ENSBIXG00005007689 #34 KCNF1 (ENSBIXG00005022457) #35 Bos_a ANCESTRAL SPECIES 6 ENSGT00940000161652 ENSGT00940000154030.a.b #13 ENSGT00390000013670 #14 ENSGT00940000157701 #15 ENSGT00940000156464 #16 ENSGT00940000156714 #17 ENSGT01030000234564.a.a.a.a.b #18 ENSGT00940000155623 #19 ENSGT00390000003990.k #20 ENSGT00940000155699 #21 ENSGT00390000008069 #22 ENSGT00940000155443 #23 ENSGT01090000260040.b.b.b.b.a.a #24 ENSGT01100000263481.n.a.a.a.a.a.a.a.a.a.a.a.b ENSGT00440000033827 #25 ENSGT00940000157612 #26 ENSGT00940000155982 #27 ENSGT00390000016845 #28 ENSGT00390000013305.a.a #29 ENSGT00940000154645.A #30 ENSGT00950000182995.e.a.a.a.fb.a #31 ENSGT00390000007900 #32 ENSGT01100000263480.a.a.b.a.a.a.b.a.a.a.a.a.a.a.a.a ENSGT00390000004263.b #33 ENSGT00940000155646.c #34 ENSGT00940000160213 #35 Wild yak MODERN SPECIES 1783 ID2 (ENSBMUG00000003840) #16 KIDINS220 (ENSBMUG00000003783) #17 MBOAT2 (ENSBMUG00000003625) #18 ENSBMUG00000003596 ASAP2 (ENSBMUG00000003572) #19 ITGB1BP1 (ENSBMUG00000003480) #20 CPSF3 (ENSBMUG00000003413) #21 IAH1 (ENSBMUG00000003367) #22 ADAM17 (ENSBMUG00000003344) #23 YWHAQ (ENSBMUG00000003324) #24 Domestic yak MODERN SPECIES 28 SOX11 (ENSBGRG00000015914) CMPK2 (ENSBGRG00000015652) #13 RSAD2 (ENSBGRG00000015611) #14 RNF144A (ENSBGRG00000015479) #15 ID2 (ENSBGRG00000015396) #16 ENSBGRG00000015325 KIDINS220 (ENSBGRG00000014341) #17 MBOAT2 (ENSBGRG00000014129) #18 ASAP2 (ENSBGRG00000013865) #19 ITGB1BP1 (ENSBGRG00000013746) #20 CPSF3 (ENSBGRG00000013338) #21 IAH1 (ENSBGRG00000013251) #22 ADAM17 (ENSBGRG00000012923) #23 YWHAQ (ENSBGRG00000012872) #24 ENSBGRG00000012819 ##24 ENSBGRG00000012787 TAF1B (ENSBGRG00000012581) #25 GRHL1 (ENSBGRG00000011381) #26 ENSBGRG00000011303 KLF11 (ENSBGRG00000011215) #27 CYS1 (ENSBGRG00000011167) #28 RRM2 (ENSBGRG00000010858) #29 HPCAL1 (ENSBGRG00000010770) #30 ENSBGRG00000010591 #31 ENSBGRG00000010565 NOL10 (ENSBGRG00000024949) #32 ENSBGRG00000024916 American bison MODERN SPECIES 3221 ENSBBBG00000012306 #8 ENSBBBG00000002314 #9 ENSBBBG00000002313 #10 ENSBBBG00000012273 ENSBBBG00000012270 RSAD2 (ENSBBBG00000012264) #14 RNF144A (ENSBBBG00000007447) #15 ID2 (ENSBBBG00000012256) #16 KIDINS220 (ENSBBBG00000012237) #17 ENSBBBG00000012162 MBOAT2 (ENSBBBG00000012157) #18 ASAP2 (ENSBBBG00000012138) #19 ENSBBBG00000012059 ITGB1BP1 (ENSBBBG00000012050) #20 CPSF3 (ENSBBBG00000012019) #21 IAH1 (ENSBBBG00000008101) #22 ADAM17 (ENSBBBG00000002244) #23 YWHAQ (ENSBBBG00000011974) #24 TAF1B (ENSBBBG00000011961) #25 GRHL1 (ENSBBBG00000011949) #26 KLF11 (ENSBBBG00000011923) #27 RRM2 (ENSBBBG00000011911) #29 HPCAL1 (ENSBBBG00000007122) #30 ODC1 (ENSBBBG00000011893) #31 NOL10 (ENSBBBG00000002209) #32 ATP6V1C2 (ENSBBBG00000011779) #33 ENSBBBG00000011729 #34 ENSBBBG00000011712 KCNF1 (ENSBBBG00000002161) #35 C2orf50 (ENSBBBG00000011703) #36 SLC66A3 (ENSBBBG00000011693) #37 Siberian musk deer DUPLICATION Siberian musk deer MODERN SPECIES 238 TTLL11 (ENSMMSG00000003370) DAB2IP (ENSMMSG00000003463) #7 ENSMMSG00000003726 ENSMMSG00000003739 #8 ENSMMSG00000003765 #9 ENSMMSG00000003776 #10 CMPK2 (ENSMMSG00000003809) #13 RSAD2 (ENSMMSG00000003822) #14 RNF144A (ENSMMSG00000003832) #15 ID2 (ENSMMSG00000003856) #16 KIDINS220 (ENSMMSG00000003882) #17 MBOAT2 (ENSMMSG00000003927) #18 ASAP2 (ENSMMSG00000000274) #19 ENSMMSG00000000578 #20 CPSF3 (ENSMMSG00000000621) #21 ENSMMSG00000000723 #22 ADAM17 (ENSMMSG00000000759) #23 YWHAQ (ENSMMSG00000000770) #24 TAF1B (ENSMMSG00000000824) #25 GRHL1 (ENSMMSG00000000910) #26 KLF11 (ENSMMSG00000001004) #27 CYS1 (ENSMMSG00000001021) #28 ENSMMSG00000001037 #29 HPCAL1 (ENSMMSG00000001078) #30 ENSMMSG00000001108 ##31 NOL10 (ENSMMSG00000001168) #32 ATP6V1C2 (ENSMMSG00000001335) #33 ENSMMSG00000001405 PDIA6 (ENSMMSG00000001421) #34 KCNF1 (ENSMMSG00000001477) #35 C2orf50 (ENSMMSG00000001487) #36 Siberian musk deer MODERN SPECIES 1252 ENSMMSG00000015924 #22 BICD1 (ENSMMSG00000015855) ENSMMSG00000015824 ##20 RESF1 (ENSMMSG00000015796) ENSMMSG00000015778 ENSMMSG00000015682 AMN1 (ENSMMSG00000015637) ETFBKMT (ENSMMSG00000015612) DENND5B (ENSMMSG00000015290) ENSMMSG00000015236 CAPRIN2 (ENSMMSG00000014356) IPO8 (ENSMMSG00000014207) ENSMMSG00000014179 Yarkand deer MODERN SPECIES 2 ENSCHYG00000016926 DAB2IP (ENSCHYG00000016211) #7 ENSCHYG00000016003 #8 ENSCHYG00000015664 #10 ENSCHYG00000015614 CMPK2 (ENSCHYG00000015445) #13 RSAD2 (ENSCHYG00000015364) #14 RNF144A (ENSCHYG00000015190) #15 ID2 (ENSCHYG00000015082) #16 KIDINS220 (ENSCHYG00000013747) #17 MBOAT2 (ENSCHYG00000013496) #18 ENSCHYG00000013479 ASAP2 (ENSCHYG00000012499) #19 ENSCHYG00000012310 #20 CPSF3 (ENSCHYG00000012112) #21 IAH1 (ENSCHYG00000012019) #22 ADAM17 (ENSCHYG00000011771) #23 YWHAQ (ENSCHYG00000011701) #24 ENSCHYG00000011680 TAF1B (ENSCHYG00000011467) #25 GRHL1 (ENSCHYG00000011321) #26 KLF11 (ENSCHYG00000011297) #27 ENSCHYG00000011258 #29 ENSCHYG00000011216 HPCAL1 (ENSCHYG00000011179) #30 ENSCHYG00000011027 #31 NOL10 (ENSCHYG00000010137) #32 ATP6V1C2 (ENSCHYG00000009711) #33 PDIA6 (ENSCHYG00000009406) #34 KCNF1 (ENSCHYG00000009374) #35 C2orf50 (ENSCHYG00000009330) #36