Bovidae	ANCESTRAL SPECIES	16	ENSGT00940000163667.b #8	ENSGT00940000161239.k.b #9	ENSGT00940000161239.k.a.b #10	ENSGT00940000161239.k.a.a #11	ENSGT00940000162436 #12	ENSGT00940000161499 #13	ENSGT00940000154853.d.a.b.a.b ##15	ENSGT00940000154853.d.a.b.b #14	ENSGT00940000154853.d.a.a #15	ENSGT00940000158566 #16	ENSGT00940000157482.d #17	ENSGT00600000084617 #18	ENSGT00410000025985 #19	ENSGT00940000155031 #20	ENSGT00940000154196.a #21	ENSGT00390000014903 #22	ENSGT00390000006255.b.b #23	ENSGT00390000006979.a #24	ENSGT00940000161450 #25	ENSGT00940000159375 #26	ENSGT00940000154911 #28	ENSGT00390000013444.a.b.b #29	ENSGT00390000002731 #30	ENSGT00390000017869 #31	ENSGT00510000048574 #32	ENSGT00940000161844 #33	ENSGT00940000157074 #34	ENSGT00950000182985.b.b #35	ENSGT00940000160539 #36	ENSGT00390000010740 #37	ENSGT00940000153986.b.b.h
Caprinae	ANCESTRAL SPECIES	20	ENSGT00940000161239.k.b #9	ENSGT00940000161239.k.a.b #10	ENSGT00940000161239.k.a.a #11	ENSGT00940000162436 #12	ENSGT00940000161499 #13	ENSGT00940000154853.d.a.b.a.a ##15	ENSGT00940000154853.d.a.b.a.b ##15	ENSGT00940000154853.d.a.b.b #14	ENSGT00940000154853.d.a.a #15	ENSGT00940000158566 #16	ENSGT00940000157482.d #17	ENSGT00600000084617 #18	ENSGT00410000025985 #19	ENSGT00940000155031 #20	ENSGT00940000154196.a #21	ENSGT00390000014903 #22	ENSGT00390000006255.b.b #23	ENSGT00390000006979.a #24	ENSGT00940000161450 #25	ENSGT00940000159375 #26	ENSGT00940000154911 #28	ENSGT00390000013444.a.b.b #29	ENSGT00390000002731 #30	ENSGT00390000017869 #31	ENSGT00510000048574 #32	ENSGT00940000161844 #33	ENSGT00940000157074 #34	ENSGT00950000182985.b.b #35	ENSGT00940000160539 #36	ENSGT00390000010740 #37	ENSGT00940000153986.b.b.h
Rambouillet Sheep	MODERN SPECIES	13	ENSOARG00020022414 #7	ENSOARG00020022510 #8	ENSOARG00020022539 #9	ENSOARG00020022570 #10	ENSOARG00020022597 #11	PLAAT5 (ENSOARG00020022652) #12	LGALS12 (ENSOARG00020022698) #13	ENSOARG00020022856 #14	ENSOARG00020022912 #15	ATL3 (ENSOARG00020022978) #16	RTN3 (ENSOARG00020023116) #17	ZFTA (ENSOARG00020023427) #18	SPINDOC (ENSOARG00020023441) #19	MARK2 (ENSOARG00020023514) #20	RCOR2 (ENSOARG00020024538) #21	NAA40 (ENSOARG00020024575) #22	COX8A (ENSOARG00020024622) #23	OTUB1 (ENSOARG00020024649) #24	MACROD1 (ENSOARG00020024720) #25	FLRT1 (ENSOARG00020024735) #26	ENSOARG00020024740 #27	ENSOARG00020006353 #28	FERMT3 (ENSOARG00020006403) #29	TRPT1 (ENSOARG00020006462) #30	NUDT22 (ENSOARG00020006645) #31	DNAJC4 (ENSOARG00020006773) #32	VEGFB (ENSOARG00020006859) #33	ENSOARG00020006995 #34	PPP1R14B (ENSOARG00020007097) #35	PLCB3 (ENSOARG00020007260) #36	BAD (ENSOARG00020007741) #37
Goat	MODERN SPECIES	21	ENSCHIG00000004328 ##11	SLC22A9 (ENSCHIG00000000518) #11	PLAAT5 (ENSCHIG00000005227) #12	ENSCHIG00000020309 #13	ENSCHIG00000011083 ##15	ENSCHIG00000003540 #13	ENSCHIG00000016166 #14	ENSCHIG00000014874 ##15	ENSCHIG00000024459 #15	ATL3 (ENSCHIG00000022420) #16	ENSCHIG00000014185 #17	ZFTA (ENSCHIG00000022847) #18	SPINDOC (ENSCHIG00000009623) #19	MARK2 (ENSCHIG00000019875) #20	RCOR2 (ENSCHIG00000015292) #21	NAA40 (ENSCHIG00000010908) #22	COX8A (ENSCHIG00000024147) #23	ENSCHIG00000014256 #24	MACROD1 (ENSCHIG00000019953) #25	CORO1B (ENSCHIG00000017528)	RPS6KB2 (ENSCHIG00000009327)	PTPRCAP (ENSCHIG00000009500)	ENSCHIG00000024098	FLRT1 (ENSCHIG00000004163) #26	ENSCHIG00000010802 #28	FERMT3 (ENSCHIG00000024155) #29	TRPT1 (ENSCHIG00000021308) #30	NUDT22 (ENSCHIG00000016120) #31	DNAJC4 (ENSCHIG00000023580) #32	VEGFB (ENSCHIG00000024766) #33	ENSCHIG00000026323 #34
Bovinae	ANCESTRAL SPECIES	24	ENSGT00940000163667.a.c.b #7	ENSGT00940000163667.b #8	ENSGT00940000161239.k.b #9	ENSGT00940000161239.k.a.b #10	ENSGT00940000162436 #12	ENSGT00940000161499 #13	ENSGT00940000154853.d.a.b.a.b ##15	ENSGT00940000154853.d.a.b.b #14	ENSGT00940000154853.d.a.a #15	ENSGT00940000158566 #16	ENSGT00940000157482.d #17	ENSGT00600000084617 #18	ENSGT00410000025985 #19	ENSGT00940000155031 #20	ENSGT00940000154196.a #21	ENSGT00390000014903 #22	ENSGT00390000006255.b.b #23	ENSGT00390000006979.a #24	ENSGT00940000161450 #25	ENSGT00940000159375 #26	ENSGT00940000154911.k.b #28	ENSGT00390000013444.a.b.b #29	ENSGT00390000002731 #30	ENSGT00390000017869 #31	ENSGT00510000048574 #32	ENSGT00940000161844 #33	ENSGT00940000157074.jb #34	ENSGT00950000182985.b.b #35	ENSGT00940000160539 #36	ENSGT00390000010740 #37	ENSGT00940000153986.b.b.h
Bos	ANCESTRAL SPECIES	11	ENSGT00940000163667.a.c.a.b.b.b ##8	ENSGT00940000163667.a.c.b #7	ENSGT00940000163667.b #8	ENSGT00940000161239.k.b #9	ENSGT00940000161239.k.a.b #10	ENSGT00940000162436 #12	ENSGT00940000161499 #13	ENSGT00940000154853.d.a.b.b #14	ENSGT00940000154853.d.a.a #15	ENSGT00940000158566 #16	ENSGT00940000157482.d #17	ENSGT00600000084617 #18	ENSGT00410000025985 #19	ENSGT00940000155031 #20	ENSGT00940000154196.a #21	ENSGT00390000014903 #22	ENSGT00390000006255.b.b #23	ENSGT00390000006979.a #24	ENSGT00940000159375 #26	ENSGT00940000161450 #25	ENSGT00940000154911.k.b #28	ENSGT00390000013444.a.b.b #29	ENSGT00390000002731 #30	ENSGT00390000017869 #31	ENSGT00510000048574 #32	ENSGT00940000161844 #33	ENSGT00940000157074.jb #34	ENSGT00960000191711	ENSGT00940000157074.ib.a #34	ENSGT00950000182985.b.b #35	ENSGT00940000160539 #36
Bos_b	ANCESTRAL SPECIES	10	ENSGT00940000163667.a.c.a.a ##8	ENSGT00940000163667.a.c.b #7	ENSGT00940000163667.b #8	ENSGT00940000161239.k.b #9	ENSGT00940000161239.k.a.b #10	ENSGT00940000162436 #12	ENSGT00940000161499 #13	ENSGT00940000154853.d.a.b.b #14	ENSGT00940000154853.d.a.a #15	ENSGT00940000158566 #16	ENSGT00940000157482.d #17	ENSGT00600000084617 #18	ENSGT00410000025985 #19	ENSGT00940000155031 #20	ENSGT00940000154196.a #21	ENSGT00390000014903 #22	ENSGT00390000006255.b.b.f #23	ENSGT00390000006979.a #24	ENSGT00940000159375 #26	ENSGT00940000161450 #25	ENSGT01100000263480.a.a.b.b.a.b	ENSGT00940000154911.k.b #28	ENSGT00390000013444.a.b.b #29	ENSGT00390000002731 #30	ENSGT00390000017869 #31	ENSGT00510000048574 #32	ENSGT00940000161844 #33	ENSGT00940000157074.jb #34	ENSGT00950000182985.b.b #35	ENSGT00940000160539 #36	ENSGT00390000010740 #37
Hybrid Bos Indicus	MODERN SPECIES	21	ENSBIXG00005011910 ##8	ENSBIXG00005011974 ##8	ENSBIXG00005011983	ENSBIXG00005006329 #8	ENSBIXG00005012170 #9	PLAAT5 (ENSBIXG00005012206) #12	LGALS12 (ENSBIXG00005012274) #13	ENSBIXG00005012288 #14	ENSBIXG00005001297 #15	ATL3 (ENSBIXG00005012347) #16	ZFTA (ENSBIXG00005012369) #18	RTN3 (ENSBIXG00005012431) #17	SPINDOC (ENSBIXG00005012481) #19	MARK2 (ENSBIXG00005012594) #20	RCOR2 (ENSBIXG00005000306) #21	NAA40 (ENSBIXG00005012709) #22	ENSBIXG00005012717	ENSBIXG00005012737 #23	OTUB1 (ENSBIXG00005001411) #24	FLRT1 (ENSBIXG00005012789) #26	MACROD1 (ENSBIXG00005012832) #25	ENSBIXG00005012852	ENSBIXG00005012901 #28	FERMT3 (ENSBIXG00005012931) #29	TRPT1 (ENSBIXG00005012973) #30	NUDT22 (ENSBIXG00005001478) #31	ENSBIXG00005013006 #32	ENSBIXG00005013057 #33	FKBP2 (ENSBIXG00005001501) #34	ENSBIXG00005013124 #35	PLCB3 (ENSBIXG00005013241) #36
Cow	MODERN SPECIES	21	SLC22A9 (ENSBTAG00000039463) #9	ENSBTAG00000003236 #10	PLAAT5 (ENSBTAG00000032730) #12	LGALS12 (ENSBTAG00000007108) #13	ENSBTAG00000037645	ENSBTAG00000011019 #14	ENSBTAG00000054910	ENSBTAG00000052238	PLA2G16 (ENSBTAG00000015248) #15	ATL3 (ENSBTAG00000003330) #16	RTN3 (ENSBTAG00000019204) #17	ZFTA (ENSBTAG00000019208) #18	SPINDOC (ENSBTAG00000018022) #19	MARK2 (ENSBTAG00000007825) #20	RCOR2 (ENSBTAG00000007827) #21	NAA40 (ENSBTAG00000003073) #22	ENSBTAG00000055013	COX8A (ENSBTAG00000052272) #23	OTUB1 (ENSBTAG00000003967) #24	MACROD1 (ENSBTAG00000017181) #25	FLRT1 (ENSBTAG00000048264) #26	ENSBTAG00000053576	STIP1 (ENSBTAG00000015663) #28	FERMT3 (ENSBTAG00000045862) #29	TRPT1 (ENSBTAG00000016555) #30	NUDT22 (ENSBTAG00000016559) #31	DNAJC4 (ENSBTAG00000016560) #32	VEGFB (ENSBTAG00000047567) #33	FKBP2 (ENSBTAG00000013606) #34	ENSBTAG00000047265 #35	BAD (ENSBTAG00000012511) #37
Bos_a	ANCESTRAL SPECIES	51							ENSGT00940000154853.d.b ##15	ENSGT00940000162660.b.e.b.e.b.b	ENSGT00940000154853.d.a.a #15	ENSGT00940000158566 #16	ENSGT00940000157482.d #17	ENSGT00600000084617 #18	ENSGT00410000025985 #19	ENSGT00940000155031 #20	ENSGT00940000154196.a #21	ENSGT00390000014903 #22	ENSGT00390000006255.b.b #23	ENSGT00390000006979.a #24	ENSGT00940000159375 #26	ENSGT00940000161450 #25	ENSGT00940000154911.k.b #28	ENSGT00390000013444.a.b.b #29	ENSGT00390000002731 #30	ENSGT00390000017869 #31	ENSGT00510000048574 #32	ENSGT00940000161844 #33	ENSGT00940000157074.jb #34	ENSGT00960000191711	ENSGT01050000248447	ENSGT00940000153986.b.b.g.b	ENSGT00400000022853
Domestic yak	MODERN SPECIES	21	ENSBGRG00000018768	ENSBGRG00000018488	ENSBGRG00000018092	ENSBGRG00000017314	ENSBGRG00000017025	ENSBGRG00000016902	ENSBGRG00000016578	ENSBGRG00000016387	ENSBGRG00000016257	ENSBGRG00000016201 ##15	ENSBGRG00000016012 #14	ENSBGRG00000015932	ENSBGRG00000015901 ##15	ENSBGRG00000015078 #17	ENSBGRG00000015035	ENSBGRG00000010523 #22	COX8A (ENSBGRG00000010495) #23	ENSBGRG00000010473	ENSBGRG00000010409	MACROD1 (ENSBGRG00000009880) #25	ENSBGRG00000008802 #30	ENSBGRG00000008556 #32	ENSBGRG00000008499 #33	ENSBGRG00000008316 #34	ENSBGRG00000008262	ENSBGRG00000026694	ENSBGRG00000026692	ENSBGRG00000026686	ENSBGRG00000026683	ENSBGRG00000026637	ENSBGRG00000026636
Wild yak	MODERN SPECIES	626								ENSBMUG00000015842	ENSBMUG00000015825 #15	ATL3 (ENSBMUG00000015801) #16	RTN3 (ENSBMUG00000015756) #17	ZFTA (ENSBMUG00000015627) #18	SPINDOC (ENSBMUG00000015605) #19	MARK2 (ENSBMUG00000015395) #20	RCOR2 (ENSBMUG00000015113) #21	NAA40 (ENSBMUG00000015090) #22	COX8A (ENSBMUG00000015074) #23	OTUB1 (ENSBMUG00000015062) #24	FLRT1 (ENSBMUG00000015023) #26	MACROD1 (ENSBMUG00000015005) #25	ENSBMUG00000014985 #28	FERMT3 (ENSBMUG00000014929) #29	NUDT22 (ENSBMUG00000014863) #31	TRPT1 (ENSBMUG00000014838) #30	DNAJC4 (ENSBMUG00000014792) #32	VEGFB (ENSBMUG00000014729) #33	ENSBMUG00000014719 #34	ENSBMUG00000014636 #35	PLCB3 (ENSBMUG00000014600) #36	BAD (ENSBMUG00000014485) #37	GPR137 (ENSBMUG00000014468)
American bison	MODERN SPECIES	3018								ENSBBBG00000021642	ENSBBBG00000021627 #15	ATL3 (ENSBBBG00000021605) #16	RTN3 (ENSBBBG00000021572) #17	ZFTA (ENSBBBG00000007521) #18	SPINDOC (ENSBBBG00000005714) #19	MARK2 (ENSBBBG00000021376) #20	RCOR2 (ENSBBBG00000020733) #21	NAA40 (ENSBBBG00000020723) #22	COX8A (ENSBBBG00000020712) #23	OTUB1 (ENSBBBG00000020705) #24	MACROD1 (ENSBBBG00000020665) #25	FLRT1 (ENSBBBG00000020605) #26	ENSBBBG00000005558 #28	FERMT3 (ENSBBBG00000020566) #29	TRPT1 (ENSBBBG00000007238) #30	NUDT22 (ENSBBBG00000020494) #31	DNAJC4 (ENSBBBG00000020465) #32	VEGFB (ENSBBBG00000020455) #33	ENSBBBG00000020447 #34	ENSBBBG00000020436 #35	PLCB3 (ENSBBBG00000000517) #36	BAD (ENSBBBG00000000654) #37	GPR137 (ENSBBBG00000000672)