Artiodactyla_a ANCESTRAL SPECIES 1 ENSGT00940000154901.C.b.e ENSGT00940000163667.b #8 ENSGT00940000163667.a #7 ENSGT00940000161239.k.b #9 ENSGT00940000161239.k.a.b #10 ENSGT00940000161239.k.a.a #11 ENSGT00940000162436 #12 ENSGT00940000161499 #13 ENSGT00940000154853.d #15 ENSGT00940000158566 #16 ENSGT00940000157482.d #17 ENSGT00600000084617 #18 ENSGT00410000025985 #19 ENSGT00940000155031 #20 ENSGT00940000154196.a #21 ENSGT00390000014903 #22 ENSGT00390000006255.b.b #23 ENSGT00390000006979.a #24 ENSGT00940000161450 #25 ENSGT00940000159375 #26 ENSGT00940000154911 #28 ENSGT00390000013444.a.b.b #29 ENSGT00390000002731 #30 ENSGT00390000017869 #31 ENSGT00510000048574 #32 ENSGT00940000161844 #33 ENSGT00940000157074 #34 ENSGT00950000182985.b.b #35 ENSGT00940000160539 #36 ENSGT00390000010740 #37 ENSGT00940000153986.b.b.h Artiodactyla_b ANCESTRAL SPECIES 1 ENSGT00940000154901.C.b.e ENSGT00940000163667.b #8 ENSGT00940000163667.a #7 ENSGT00940000161239.k.b #9 ENSGT00940000161239.k.a.b #10 ENSGT00940000161239.k.a.a #11 ENSGT00940000162436 #12 ENSGT00940000161499 #13 ENSGT00940000154853.d #15 ENSGT00940000158566 #16 ENSGT00940000157482.d #17 ENSGT00600000084617 #18 ENSGT00410000025985 #19 ENSGT00940000155031 #20 ENSGT00940000154196.a #21 ENSGT00390000014903 #22 ENSGT00390000006255.b.b #23 ENSGT00390000006979.a #24 ENSGT00940000161450 #25 ENSGT00940000159375 #26 ENSGT00940000154911 #28 ENSGT00390000013444.a.b.b #29 ENSGT00390000002731 #30 ENSGT00390000017869 #31 ENSGT00510000048574 #32 ENSGT00940000161844 #33 ENSGT00940000157074 #34 ENSGT00950000182985.b.b #35 ENSGT00940000160539 #36 ENSGT00390000010740 #37 ENSGT00940000153986.b.b.h Pecora ANCESTRAL SPECIES 13 ENSGT00940000157004.a.b.a ENSGT00940000157004.a.b.b ENSGT00940000154901.C.b.e ENSGT00940000163667.a.c.a.b.b.a ##8 ENSGT00940000163667.a.c.b #7 ENSGT00940000161239.l ##11 ENSGT00940000162436 #12 ENSGT00940000161499 #13 ENSGT00940000154853.d.a.a #15 ENSGT00940000158566 #16 ENSGT00940000157482.d #17 ENSGT00600000084617 #18 ENSGT00410000025985 #19 ENSGT00940000155031 #20 ENSGT00940000154196.a #21 ENSGT00390000014903 #22 ENSGT00390000006255.b.b #23 ENSGT00390000006979.a #24 ENSGT00940000161450 #25 ENSGT00940000159375 #26 ENSGT00940000154911 #28 ENSGT00390000013444.a.b.b #29 ENSGT00390000002731 #30 ENSGT00390000017869 #31 ENSGT00510000048574 #32 ENSGT00940000161844 #33 ENSGT00940000157074 #34 ENSGT00950000182985.b.b #35 ENSGT00940000160539 #36 ENSGT00390000010740 #37 ENSGT00940000153986.b.b.h Percora_a ANCESTRAL SPECIES 16 ENSGT00940000154901.C.b.e ENSGT00940000163667.a.c.a.b.a ##8 ENSGT00940000163667.b #8 ENSGT00940000161239.k.b #9 ENSGT00940000161239.k.a.b #10 ENSGT00940000161239.k.a.a #11 ENSGT00940000162436 #12 ENSGT00940000161499 #13 ENSGT00940000154853.d.a.a #15 ENSGT00940000158566 #16 ENSGT00940000157482.d #17 ENSGT00600000084617 #18 ENSGT00410000025985 #19 ENSGT00940000155031 #20 ENSGT00940000154196.a #21 ENSGT00390000014903 #22 ENSGT00390000006255.b.b #23 ENSGT00390000006979.a #24 ENSGT00940000161450 #25 ENSGT00940000159375 #26 ENSGT00940000154911 #28 ENSGT00390000013444.a.b.b #29 ENSGT00390000002731 #30 ENSGT00390000017869 #31 ENSGT00510000048574 #32 ENSGT00940000161844 #33 ENSGT00940000157074 #34 ENSGT00950000182985.b.b #35 ENSGT00940000160539 #36 ENSGT00390000010740 #37 ENSGT00940000153986.b.b.h Bovidae ANCESTRAL SPECIES 16 ENSGT00940000163667.b #8 ENSGT00940000161239.k.b #9 ENSGT00940000161239.k.a.b #10 ENSGT00940000161239.k.a.a #11 ENSGT00940000162436 #12 ENSGT00940000161499 #13 ENSGT00940000154853.d.a.b.a.b ##15 ENSGT00940000154853.d.a.b.b #14 ENSGT00940000154853.d.a.a #15 ENSGT00940000158566 #16 ENSGT00940000157482.d #17 ENSGT00600000084617 #18 ENSGT00410000025985 #19 ENSGT00940000155031 #20 ENSGT00940000154196.a #21 ENSGT00390000014903 #22 ENSGT00390000006255.b.b #23 ENSGT00390000006979.a #24 ENSGT00940000161450 #25 ENSGT00940000159375 #26 ENSGT00940000154911 #28 ENSGT00390000013444.a.b.b #29 ENSGT00390000002731 #30 ENSGT00390000017869 #31 ENSGT00510000048574 #32 ENSGT00940000161844 #33 ENSGT00940000157074 #34 ENSGT00950000182985.b.b #35 ENSGT00940000160539 #36 ENSGT00390000010740 #37 ENSGT00940000153986.b.b.h Caprinae ANCESTRAL SPECIES 20 ENSGT00940000161239.k.b #9 ENSGT00940000161239.k.a.b #10 ENSGT00940000161239.k.a.a #11 ENSGT00940000162436 #12 ENSGT00940000161499 #13 ENSGT00940000154853.d.a.b.a.a ##15 ENSGT00940000154853.d.a.b.a.b ##15 ENSGT00940000154853.d.a.b.b #14 ENSGT00940000154853.d.a.a #15 ENSGT00940000158566 #16 ENSGT00940000157482.d #17 ENSGT00600000084617 #18 ENSGT00410000025985 #19 ENSGT00940000155031 #20 ENSGT00940000154196.a #21 ENSGT00390000014903 #22 ENSGT00390000006255.b.b #23 ENSGT00390000006979.a #24 ENSGT00940000161450 #25 ENSGT00940000159375 #26 ENSGT00940000154911 #28 ENSGT00390000013444.a.b.b #29 ENSGT00390000002731 #30 ENSGT00390000017869 #31 ENSGT00510000048574 #32 ENSGT00940000161844 #33 ENSGT00940000157074 #34 ENSGT00950000182985.b.b #35 ENSGT00940000160539 #36 ENSGT00390000010740 #37 ENSGT00940000153986.b.b.h Rambouillet Sheep MODERN SPECIES 13 ENSOARG00020022414 #7 ENSOARG00020022510 #8 ENSOARG00020022539 #9 ENSOARG00020022570 #10 ENSOARG00020022597 #11 PLAAT5 (ENSOARG00020022652) #12 LGALS12 (ENSOARG00020022698) #13 ENSOARG00020022856 #14 ENSOARG00020022912 #15 ATL3 (ENSOARG00020022978) #16 RTN3 (ENSOARG00020023116) #17 ZFTA (ENSOARG00020023427) #18 SPINDOC (ENSOARG00020023441) #19 MARK2 (ENSOARG00020023514) #20 RCOR2 (ENSOARG00020024538) #21 NAA40 (ENSOARG00020024575) #22 COX8A (ENSOARG00020024622) #23 OTUB1 (ENSOARG00020024649) #24 MACROD1 (ENSOARG00020024720) #25 FLRT1 (ENSOARG00020024735) #26 ENSOARG00020024740 #27 ENSOARG00020006353 #28 FERMT3 (ENSOARG00020006403) #29 TRPT1 (ENSOARG00020006462) #30 NUDT22 (ENSOARG00020006645) #31 DNAJC4 (ENSOARG00020006773) #32 VEGFB (ENSOARG00020006859) #33 ENSOARG00020006995 #34 PPP1R14B (ENSOARG00020007097) #35 PLCB3 (ENSOARG00020007260) #36 BAD (ENSOARG00020007741) #37 Goat MODERN SPECIES 21 ENSCHIG00000004328 ##11 SLC22A9 (ENSCHIG00000000518) #11 PLAAT5 (ENSCHIG00000005227) #12 ENSCHIG00000020309 #13 ENSCHIG00000011083 ##15 ENSCHIG00000003540 #13 ENSCHIG00000016166 #14 ENSCHIG00000014874 ##15 ENSCHIG00000024459 #15 ATL3 (ENSCHIG00000022420) #16 ENSCHIG00000014185 #17 ZFTA (ENSCHIG00000022847) #18 SPINDOC (ENSCHIG00000009623) #19 MARK2 (ENSCHIG00000019875) #20 RCOR2 (ENSCHIG00000015292) #21 NAA40 (ENSCHIG00000010908) #22 COX8A (ENSCHIG00000024147) #23 ENSCHIG00000014256 #24 MACROD1 (ENSCHIG00000019953) #25 CORO1B (ENSCHIG00000017528) RPS6KB2 (ENSCHIG00000009327) PTPRCAP (ENSCHIG00000009500) ENSCHIG00000024098 FLRT1 (ENSCHIG00000004163) #26 ENSCHIG00000010802 #28 FERMT3 (ENSCHIG00000024155) #29 TRPT1 (ENSCHIG00000021308) #30 NUDT22 (ENSCHIG00000016120) #31 DNAJC4 (ENSCHIG00000023580) #32 VEGFB (ENSCHIG00000024766) #33 ENSCHIG00000026323 #34 Bovinae ANCESTRAL SPECIES 24 ENSGT00940000163667.a.c.b #7 ENSGT00940000163667.b #8 ENSGT00940000161239.k.b #9 ENSGT00940000161239.k.a.b #10 ENSGT00940000162436 #12 ENSGT00940000161499 #13 ENSGT00940000154853.d.a.b.a.b ##15 ENSGT00940000154853.d.a.b.b #14 ENSGT00940000154853.d.a.a #15 ENSGT00940000158566 #16 ENSGT00940000157482.d #17 ENSGT00600000084617 #18 ENSGT00410000025985 #19 ENSGT00940000155031 #20 ENSGT00940000154196.a #21 ENSGT00390000014903 #22 ENSGT00390000006255.b.b #23 ENSGT00390000006979.a #24 ENSGT00940000161450 #25 ENSGT00940000159375 #26 ENSGT00940000154911.k.b #28 ENSGT00390000013444.a.b.b #29 ENSGT00390000002731 #30 ENSGT00390000017869 #31 ENSGT00510000048574 #32 ENSGT00940000161844 #33 ENSGT00940000157074.jb #34 ENSGT00950000182985.b.b #35 ENSGT00940000160539 #36 ENSGT00390000010740 #37 ENSGT00940000153986.b.b.h Bos ANCESTRAL SPECIES 11 ENSGT00940000163667.a.c.a.b.b.b ##8 ENSGT00940000163667.a.c.b #7 ENSGT00940000163667.b #8 ENSGT00940000161239.k.b #9 ENSGT00940000161239.k.a.b #10 ENSGT00940000162436 #12 ENSGT00940000161499 #13 ENSGT00940000154853.d.a.b.b #14 ENSGT00940000154853.d.a.a #15 ENSGT00940000158566 #16 ENSGT00940000157482.d #17 ENSGT00600000084617 #18 ENSGT00410000025985 #19 ENSGT00940000155031 #20 ENSGT00940000154196.a #21 ENSGT00390000014903 #22 ENSGT00390000006255.b.b #23 ENSGT00390000006979.a #24 ENSGT00940000159375 #26 ENSGT00940000161450 #25 ENSGT00940000154911.k.b #28 ENSGT00390000013444.a.b.b #29 ENSGT00390000002731 #30 ENSGT00390000017869 #31 ENSGT00510000048574 #32 ENSGT00940000161844 #33 ENSGT00940000157074.jb #34 ENSGT00960000191711 ENSGT00940000157074.ib.a #34 ENSGT00950000182985.b.b #35 ENSGT00940000160539 #36 Bos_b ANCESTRAL SPECIES 10 ENSGT00940000163667.a.c.a.a ##8 ENSGT00940000163667.a.c.b #7 ENSGT00940000163667.b #8 ENSGT00940000161239.k.b #9 ENSGT00940000161239.k.a.b #10 ENSGT00940000162436 #12 ENSGT00940000161499 #13 ENSGT00940000154853.d.a.b.b #14 ENSGT00940000154853.d.a.a #15 ENSGT00940000158566 #16 ENSGT00940000157482.d #17 ENSGT00600000084617 #18 ENSGT00410000025985 #19 ENSGT00940000155031 #20 ENSGT00940000154196.a #21 ENSGT00390000014903 #22 ENSGT00390000006255.b.b.f #23 ENSGT00390000006979.a #24 ENSGT00940000159375 #26 ENSGT00940000161450 #25 ENSGT01100000263480.a.a.b.b.a.b ENSGT00940000154911.k.b #28 ENSGT00390000013444.a.b.b #29 ENSGT00390000002731 #30 ENSGT00390000017869 #31 ENSGT00510000048574 #32 ENSGT00940000161844 #33 ENSGT00940000157074.jb #34 ENSGT00950000182985.b.b #35 ENSGT00940000160539 #36 ENSGT00390000010740 #37 Hybrid Bos Indicus MODERN SPECIES 21 ENSBIXG00005011910 ##8 ENSBIXG00005011974 ##8 ENSBIXG00005011983 ENSBIXG00005006329 #8 ENSBIXG00005012170 #9 PLAAT5 (ENSBIXG00005012206) #12 LGALS12 (ENSBIXG00005012274) #13 ENSBIXG00005012288 #14 ENSBIXG00005001297 #15 ATL3 (ENSBIXG00005012347) #16 ZFTA (ENSBIXG00005012369) #18 RTN3 (ENSBIXG00005012431) #17 SPINDOC (ENSBIXG00005012481) #19 MARK2 (ENSBIXG00005012594) #20 RCOR2 (ENSBIXG00005000306) #21 NAA40 (ENSBIXG00005012709) #22 ENSBIXG00005012717 ENSBIXG00005012737 #23 OTUB1 (ENSBIXG00005001411) #24 FLRT1 (ENSBIXG00005012789) #26 MACROD1 (ENSBIXG00005012832) #25 ENSBIXG00005012852 ENSBIXG00005012901 #28 FERMT3 (ENSBIXG00005012931) #29 TRPT1 (ENSBIXG00005012973) #30 NUDT22 (ENSBIXG00005001478) #31 ENSBIXG00005013006 #32 ENSBIXG00005013057 #33 FKBP2 (ENSBIXG00005001501) #34 ENSBIXG00005013124 #35 PLCB3 (ENSBIXG00005013241) #36 Cow MODERN SPECIES 21 SLC22A9 (ENSBTAG00000039463) #9 ENSBTAG00000003236 #10 PLAAT5 (ENSBTAG00000032730) #12 LGALS12 (ENSBTAG00000007108) #13 ENSBTAG00000037645 ENSBTAG00000011019 #14 ENSBTAG00000054910 ENSBTAG00000052238 PLA2G16 (ENSBTAG00000015248) #15 ATL3 (ENSBTAG00000003330) #16 RTN3 (ENSBTAG00000019204) #17 ZFTA (ENSBTAG00000019208) #18 SPINDOC (ENSBTAG00000018022) #19 MARK2 (ENSBTAG00000007825) #20 RCOR2 (ENSBTAG00000007827) #21 NAA40 (ENSBTAG00000003073) #22 ENSBTAG00000055013 COX8A (ENSBTAG00000052272) #23 OTUB1 (ENSBTAG00000003967) #24 MACROD1 (ENSBTAG00000017181) #25 FLRT1 (ENSBTAG00000048264) #26 ENSBTAG00000053576 STIP1 (ENSBTAG00000015663) #28 FERMT3 (ENSBTAG00000045862) #29 TRPT1 (ENSBTAG00000016555) #30 NUDT22 (ENSBTAG00000016559) #31 DNAJC4 (ENSBTAG00000016560) #32 VEGFB (ENSBTAG00000047567) #33 FKBP2 (ENSBTAG00000013606) #34 ENSBTAG00000047265 #35 BAD (ENSBTAG00000012511) #37 Bos_a ANCESTRAL SPECIES 51 ENSGT00940000154853.d.b ##15 ENSGT00940000162660.b.e.b.e.b.b ENSGT00940000154853.d.a.a #15 ENSGT00940000158566 #16 ENSGT00940000157482.d #17 ENSGT00600000084617 #18 ENSGT00410000025985 #19 ENSGT00940000155031 #20 ENSGT00940000154196.a #21 ENSGT00390000014903 #22 ENSGT00390000006255.b.b #23 ENSGT00390000006979.a #24 ENSGT00940000159375 #26 ENSGT00940000161450 #25 ENSGT00940000154911.k.b #28 ENSGT00390000013444.a.b.b #29 ENSGT00390000002731 #30 ENSGT00390000017869 #31 ENSGT00510000048574 #32 ENSGT00940000161844 #33 ENSGT00940000157074.jb #34 ENSGT00960000191711 ENSGT01050000248447 ENSGT00940000153986.b.b.g.b ENSGT00400000022853 Domestic yak MODERN SPECIES 21 ENSBGRG00000018768 ENSBGRG00000018488 ENSBGRG00000018092 ENSBGRG00000017314 ENSBGRG00000017025 ENSBGRG00000016902 ENSBGRG00000016578 ENSBGRG00000016387 ENSBGRG00000016257 ENSBGRG00000016201 ##15 ENSBGRG00000016012 #14 ENSBGRG00000015932 ENSBGRG00000015901 ##15 ENSBGRG00000015078 #17 ENSBGRG00000015035 ENSBGRG00000010523 #22 COX8A (ENSBGRG00000010495) #23 ENSBGRG00000010473 ENSBGRG00000010409 MACROD1 (ENSBGRG00000009880) #25 ENSBGRG00000008802 #30 ENSBGRG00000008556 #32 ENSBGRG00000008499 #33 ENSBGRG00000008316 #34 ENSBGRG00000008262 ENSBGRG00000026694 ENSBGRG00000026692 ENSBGRG00000026686 ENSBGRG00000026683 ENSBGRG00000026637 ENSBGRG00000026636 Wild yak MODERN SPECIES 626 ENSBMUG00000015842 ENSBMUG00000015825 #15 ATL3 (ENSBMUG00000015801) #16 RTN3 (ENSBMUG00000015756) #17 ZFTA (ENSBMUG00000015627) #18 SPINDOC (ENSBMUG00000015605) #19 MARK2 (ENSBMUG00000015395) #20 RCOR2 (ENSBMUG00000015113) #21 NAA40 (ENSBMUG00000015090) #22 COX8A (ENSBMUG00000015074) #23 OTUB1 (ENSBMUG00000015062) #24 FLRT1 (ENSBMUG00000015023) #26 MACROD1 (ENSBMUG00000015005) #25 ENSBMUG00000014985 #28 FERMT3 (ENSBMUG00000014929) #29 NUDT22 (ENSBMUG00000014863) #31 TRPT1 (ENSBMUG00000014838) #30 DNAJC4 (ENSBMUG00000014792) #32 VEGFB (ENSBMUG00000014729) #33 ENSBMUG00000014719 #34 ENSBMUG00000014636 #35 PLCB3 (ENSBMUG00000014600) #36 BAD (ENSBMUG00000014485) #37 GPR137 (ENSBMUG00000014468) American bison MODERN SPECIES 3018 ENSBBBG00000021642 ENSBBBG00000021627 #15 ATL3 (ENSBBBG00000021605) #16 RTN3 (ENSBBBG00000021572) #17 ZFTA (ENSBBBG00000007521) #18 SPINDOC (ENSBBBG00000005714) #19 MARK2 (ENSBBBG00000021376) #20 RCOR2 (ENSBBBG00000020733) #21 NAA40 (ENSBBBG00000020723) #22 COX8A (ENSBBBG00000020712) #23 OTUB1 (ENSBBBG00000020705) #24 MACROD1 (ENSBBBG00000020665) #25 FLRT1 (ENSBBBG00000020605) #26 ENSBBBG00000005558 #28 FERMT3 (ENSBBBG00000020566) #29 TRPT1 (ENSBBBG00000007238) #30 NUDT22 (ENSBBBG00000020494) #31 DNAJC4 (ENSBBBG00000020465) #32 VEGFB (ENSBBBG00000020455) #33 ENSBBBG00000020447 #34 ENSBBBG00000020436 #35 PLCB3 (ENSBBBG00000000517) #36 BAD (ENSBBBG00000000654) #37 GPR137 (ENSBBBG00000000672) Siberian musk deer DUPLICATION Siberian musk deer MODERN SPECIES 1224 ENSMMSG00000011784 #7 ENSMMSG00000011721 #8 ENSMMSG00000011665 #9 ENSMMSG00000009715 #10 ENSMMSG00000009592 #11 PLAAT5 (ENSMMSG00000009542) #12 LGALS12 (ENSMMSG00000009042) #13 PLAAT3 (ENSMMSG00000008953) #15 ATL3 (ENSMMSG00000008889) #16 RTN3 (ENSMMSG00000008565) #17 ZFTA (ENSMMSG00000008490) #18 ENSMMSG00000008470 SPINDOC (ENSMMSG00000008448) #19 MARK2 (ENSMMSG00000008147) #20 RCOR2 (ENSMMSG00000008061) #21 ENSMMSG00000007918 #22 COX8A (ENSMMSG00000007882) #23 OTUB1 (ENSMMSG00000007821) #24 FLRT1 (ENSMMSG00000007806) #26 MACROD1 (ENSMMSG00000007762) #25 STIP1 (ENSMMSG00000007710) #28 FERMT3 (ENSMMSG00000007663) #29 NUDT22 (ENSMMSG00000022959) #31 TRPT1 (ENSMMSG00000022942) #30 DNAJC4 (ENSMMSG00000022933) #32 VEGFB (ENSMMSG00000022926) #33 FKBP2 (ENSMMSG00000022911) #34 ENSMMSG00000022898 #35 PLCB3 (ENSMMSG00000022830) #36 BAD (ENSMMSG00000022809) #37 GPR137 (ENSMMSG00000022771) Siberian musk deer MODERN SPECIES 1216 MRPS24 (ENSMMSG00000022985) URGCP (ENSMMSG00000022974) UBE2D4 (ENSMMSG00000022954) DBNL (ENSMMSG00000022945) PGAM2 (ENSMMSG00000022938) VOPP1 (ENSMMSG00000022874) LANCL2 (ENSMMSG00000022852) EGFR (ENSMMSG00000022810) ENSMMSG00000022790 ENSMMSG00000022775 #22 ENSMMSG00000022770 SEC61G (ENSMMSG00000022763) ENSMMSG00000022752 Yarkand deer MODERN SPECIES 11 ENSCHYG00000000030 ##8 ENSCHYG00000000040 #8 ENSCHYG00000000059 ENSCHYG00000000068 #9 ENSCHYG00000000102 #10 ENSCHYG00000000122 ##11 ENSCHYG00000000141 #12 LGALS12 (ENSCHYG00000000154) #13 PLAAT3 (ENSCHYG00000000190) #15 ATL3 (ENSCHYG00000000208) #16 RTN3 (ENSCHYG00000000247) #17 ZFTA (ENSCHYG00000000304) #18 SPINDOC (ENSCHYG00000000325) #19 MARK2 (ENSCHYG00000000367) #20 RCOR2 (ENSCHYG00000000454) #21 NAA40 (ENSCHYG00000000489) #22 COX8A (ENSCHYG00000000507) #23 ENSCHYG00000000553 #24 MACROD1 (ENSCHYG00000000703) #25 FLRT1 (ENSCHYG00000000802) #26 ENSCHYG00000000829 #28 FERMT3 (ENSCHYG00000000897) #29 TRPT1 (ENSCHYG00000000921) #30 NUDT22 (ENSCHYG00000000944) #31 DNAJC4 (ENSCHYG00000000978) #32 PLCB3 (ENSCHYG00000001034) #36 BAD (ENSCHYG00000001170) #37 GPR137 (ENSCHYG00000001230) KCNK4 (ENSCHYG00000001292) ENSCHYG00000001317 ESRRA (ENSCHYG00000001346) Cetacea ANCESTRAL SPECIES 4 ENSGT00940000157004.a.b.a ENSGT00940000157004.a.b.b ENSGT00940000154901.C.b.e ENSGT00940000163667.a #7 ENSGT00940000163667.b #8 ENSGT00940000161239.k.b #9 ENSGT00940000162436 #12 ENSGT00940000161499 #13 ENSGT00940000154853.d #15 ENSGT00940000158566 #16 ENSGT00940000157482.d #17 ENSGT00600000084617 #18 ENSGT00410000025985 #19 ENSGT00940000155031 #20 ENSGT00940000154196.a #21 ENSGT00390000014903 #22 ENSGT00390000006255.b.b.c #23 ENSGT00390000006979.a #24 ENSGT00940000161450 #25 ENSGT00940000159375 #26 ENSGT00940000154911 #28 ENSGT00390000013444.a.b.b #29 ENSGT00390000002731 #30 ENSGT00390000017869 #31 ENSGT00510000048574 #32 ENSGT00940000161844 #33 ENSGT00940000157074 #34 ENSGT00950000182985.b.b #35 ENSGT00940000160539 #36 ENSGT00390000010740 #37 ENSGT00940000153986.b.b.h Odontoceti ANCESTRAL SPECIES 4 ENSGT00940000157004.a.b.a ENSGT00940000157004.a.b.b ENSGT00940000154901.C.b.e ENSGT00940000163667.b #8 ENSGT00940000163667.a #7 ENSGT00940000161239.k.b #9 ENSGT00940000162436 #12 ENSGT00940000161499 #13 ENSGT00940000154853.d #15 ENSGT00940000158566 #16 ENSGT00940000157482.d #17 ENSGT00600000084617 #18 ENSGT00410000025985 #19 ENSGT00940000155031 #20 ENSGT00940000154196.a #21 ENSGT00390000014903 #22 ENSGT00390000006255.b.b.c #23 ENSGT00390000006979.a #24 ENSGT00940000161450 #25 ENSGT00940000159375 #26 ENSGT00940000154911 #28 ENSGT00390000013444.a.b.b #29 ENSGT00390000002731 #30 ENSGT00390000017869 #31 ENSGT00510000048574 #32 ENSGT00940000161844 #33 ENSGT00940000157074 #34 ENSGT00950000182985.b.b #35 ENSGT00940000160539 #36 ENSGT00390000010740 #37 ENSGT00940000153986.b.b.h Odontoceti_a ANCESTRAL SPECIES 4 ENSGT00940000157004.a.b.a ENSGT00940000157004.a.b.b ENSGT00940000154901.C.b.e ENSGT00940000163667.b #8 ENSGT00940000163667.a #7 ENSGT00940000161239.k.b #9 ENSGT00940000162436 #12 ENSGT00940000161499 #13 ENSGT00940000154853.d #15 ENSGT00940000158566 #16 ENSGT00940000157482.d #17 ENSGT00600000084617 #18 ENSGT00410000025985 #19 ENSGT00940000155031 #20 ENSGT00940000154196.a #21 ENSGT00390000014903 #22 ENSGT00390000006255.b.b.c #23 ENSGT00390000006979.a #24 ENSGT00940000161450 #25 ENSGT00940000159375 #26 ENSGT00940000154911 #28 ENSGT00390000013444.a.b.b #29 ENSGT00390000002731 #30 ENSGT00390000017869 #31 ENSGT00510000048574 #32 ENSGT00940000161844 #33 ENSGT00940000157074 #34 ENSGT00950000182985.b.b #35 ENSGT00940000160539 #36 ENSGT00390000010740 #37 ENSGT00940000153986.b.b.h Odontoceti_b ANCESTRAL SPECIES 4 ENSGT00940000157004.a.b.a ENSGT00940000157004.a.b.b ENSGT00940000154901.C.b.e ENSGT00940000163667.b #8 ENSGT00940000163667.a #7 ENSGT00940000161239.k.b #9 ENSGT00940000162436 #12 ENSGT00940000161499 #13 ENSGT00940000154853.d #15 ENSGT00940000158566 #16 ENSGT00940000157482.d #17 ENSGT00600000084617 #18 ENSGT00410000025985 #19 ENSGT00940000155031 #20 ENSGT00940000154196.a #21 ENSGT00390000014903 #22 ENSGT00390000006255.b.b.c #23 ENSGT00390000006979.a #24 ENSGT00940000161450 #25 ENSGT00940000159375 #26 ENSGT00940000154911 #28 ENSGT00390000013444.a.b.b #29 ENSGT00390000002731 #30 ENSGT00390000017869 #31 ENSGT00510000048574 #32 ENSGT00940000161844 #33 ENSGT00940000157074 #34 ENSGT00950000182985.b.b #35 ENSGT00940000160539 #36 ENSGT00390000010740 #37 ENSGT00940000153986.b.b.h Monodontidae ANCESTRAL SPECIES 2 ENSGT01090000260892 ENSGT00940000157004.a.b.b ENSGT00940000154901.C.b.e ENSGT00940000163667.b #8 ENSGT00940000163667.a #7 ENSGT00940000161239.k.b #9 ENSGT00940000162436 #12 ENSGT00940000161499 #13 ENSGT00940000154853.d #15 ENSGT00940000158566 #16 ENSGT00940000157482.d #17 ENSGT00600000084617 #18 ENSGT00410000025985 #19 ENSGT00940000155031 #20 ENSGT00940000154196.a #21 ENSGT00390000014903 #22 ENSGT00390000006255.b.b.c #23 ENSGT00390000006979.a #24 ENSGT00940000161450 #25 ENSGT00940000159375 #26 ENSGT00940000154911 #28 ENSGT00390000013444.a.b.b #29 ENSGT00390000002731 #30 ENSGT00390000017869 #31 ENSGT00510000048574 #32 ENSGT00940000161844 #33 ENSGT00940000157074 #34 ENSGT00950000182985.b.b #35 ENSGT00940000160539 #36 ENSGT00390000010740 #37 ENSGT00940000153986.b.b.h Beluga whale MODERN SPECIES 7 SLC22A6 (ENSDLEG00000017243) SLC22A8 (ENSDLEG00000017206) ENSDLEG00000017182 #8 ENSDLEG00000017168 #7 SLC22A9 (ENSDLEG00000017119) #9 ENSDLEG00000017101 #12 ENSDLEG00000017093 LGALS12 (ENSDLEG00000017077) #13 PLAAT3 (ENSDLEG00000017064) #15 ATL3 (ENSDLEG00000017041) #16 RTN3 (ENSDLEG00000017027) #17 ZFTA (ENSDLEG00000017003) #18 CUNH11orf84 (ENSDLEG00000016974) #19 MARK2 (ENSDLEG00000016893) #20 RCOR2 (ENSDLEG00000016867) #21 NAA40 (ENSDLEG00000016844) #22 COX8A (ENSDLEG00000016831) #23 ENSDLEG00000016822 FLRT1 (ENSDLEG00000016815) #26 MACROD1 (ENSDLEG00000016721) #25 STIP1 (ENSDLEG00000016691) #28 FERMT3 (ENSDLEG00000016665) #29 TRPT1 (ENSDLEG00000016647) #30 NUDT22 (ENSDLEG00000016637) #31 DNAJC4 (ENSDLEG00000016618) #32 VEGFB (ENSDLEG00000016605) #33 ENSDLEG00000016593 #34 PPP1R14B (ENSDLEG00000016552) #35 PLCB3 (ENSDLEG00000016212) #36 BAD (ENSDLEG00000016155) #37 GPR137 (ENSDLEG00000016138) Narwhal MODERN SPECIES 314 ENSMMNG00015015886 SLC22A6 (ENSMMNG00015015915) SLC22A8 (ENSMMNG00015015986) ENSMMNG00015016169 #8 ENSMMNG00015016196 #7 SLC22A9 (ENSMMNG00015016223) #9 ENSMMNG00015016290 #12 LGALS12 (ENSMMNG00015016331) #13 PLAAT3 (ENSMMNG00015016480) #15 ATL3 (ENSMMNG00015016525) #16 RTN3 (ENSMMNG00015016643) #17 ZFTA (ENSMMNG00015016857) #18 SPINDOC (ENSMMNG00015016898) #19 MARK2 (ENSMMNG00015017076) #20 RCOR2 (ENSMMNG00015017683) #21 NAA40 (ENSMMNG00015017755) #22 COX8A (ENSMMNG00015017831) #23 ENSMMNG00015017860 #24 MACROD1 (ENSMMNG00015017943) #25 FLRT1 (ENSMMNG00015018010) #26 STIP1 (ENSMMNG00015018037) #28 FERMT3 (ENSMMNG00015018113) #29 TRPT1 (ENSMMNG00015018178) #30 NUDT22 (ENSMMNG00015018228) #31 DNAJC4 (ENSMMNG00015018277) #32 VEGFB (ENSMMNG00015018347) #33 FKBP2 (ENSMMNG00015018380) #34 PPP1R14B (ENSMMNG00015018437) #35 PLCB3 (ENSMMNG00015018509) #36 BAD (ENSMMNG00015018684) #37 GPR137 (ENSMMNG00015018746) Vaquita MODERN SPECIES 19 CHRM1 (ENSPSNG00000019868) ENSPSNG00000019881 ENSPSNG00000019902 SLC22A6 (ENSPSNG00000019972) SLC22A8 (ENSPSNG00000020185) ENSPSNG00000020372 #8 ENSPSNG00000020456 #7 SLC22A9 (ENSPSNG00000020492) #9 LGALS12 (ENSPSNG00000020749) #13 ATL3 (ENSPSNG00000004187) #16 RTN3 (ENSPSNG00000004269) #17 ZFTA (ENSPSNG00000004374) #18 SPINDOC (ENSPSNG00000004396) #19 MARK2 (ENSPSNG00000004479) #20 RCOR2 (ENSPSNG00000004582) #21 NAA40 (ENSPSNG00000004631) #22 COX8A (ENSPSNG00000004670) #23 OTUB1 (ENSPSNG00000004699) #24 MACROD1 (ENSPSNG00000004769) #25 FLRT1 (ENSPSNG00000004816) #26 STIP1 (ENSPSNG00000004844) #28 FERMT3 (ENSPSNG00000004894) #29 TRPT1 (ENSPSNG00000004967) #30 NUDT22 (ENSPSNG00000004999) #31 DNAJC4 (ENSPSNG00000005027) #32 VEGFB (ENSPSNG00000005057) #33 FKBP2 (ENSPSNG00000005083) #34 PPP1R14B (ENSPSNG00000005105) #35 PLCB3 (ENSPSNG00000005194) #36 BAD (ENSPSNG00000005491) #37 GPR137 (ENSPSNG00000005522) Dolphin MODERN SPECIES 1712 MARK2 (ENSTTRG00000010189) #20 RCOR2 (ENSTTRG00000010202) #21 NAA40 (ENSTTRG00000010210) #22 COX8A (ENSTTRG00000010218) #23 OTUB1 (ENSTTRG00000010222) #24 MACROD1 (ENSTTRG00000010228) #25 STIP1 (ENSTTRG00000010235) #28 FERMT3 (ENSTTRG00000010244) #29 TRPT1 (ENSTTRG00000010252) #30 NUDT22 (ENSTTRG00000010259) #31 DNAJC4 (ENSTTRG00000010263) #32 VEGFB (ENSTTRG00000010265) #33 FKBP2 (ENSTTRG00000010267) #34 PLCB3 (ENSTTRG00000010271) #36 BAD (ENSTTRG00000010283) #37 GPR137 (ENSTTRG00000010286) KCNK4 (ENSTTRG00000010290) CATSPERZ (ENSTTRG00000010292) Sperm whale MODERN SPECIES 7 ENSPCTG00005009626 SLC3A2 (ENSPCTG00005009673) ENSPCTG00005009866 SLC22A6 (ENSPCTG00005009975) SLC22A8 (ENSPCTG00005010325) ENSPCTG00005010706 #8 ENSPCTG00005010850 #7 SLC22A9 (ENSPCTG00005010871) #9 ENSPCTG00005010978 #12 LGALS12 (ENSPCTG00005011050) #13 ATL3 (ENSPCTG00005011358) #16 RTN3 (ENSPCTG00005011595) #17 ZFTA (ENSPCTG00005011961) #18 SPINDOC (ENSPCTG00005012035) #19 RCOR2 (ENSPCTG00005012073) #21 NAA40 (ENSPCTG00005012111) #22 ENSPCTG00005012211 #23 OTUB1 (ENSPCTG00005012259) #24 MACROD1 (ENSPCTG00005012373) #25 FLRT1 (ENSPCTG00005012477) #26 STIP1 (ENSPCTG00005012499) #28 FERMT3 (ENSPCTG00005012616) #29 TRPT1 (ENSPCTG00005012876) #30 ENSPCTG00005013105 #31 ENSPCTG00005013157 RPS6KA4 (ENSPCTG00005013466) ENSPCTG00005013544 NRXN2 (ENSPCTG00005013609) SF1 (ENSPCTG00005014576) MAP4K2 (ENSPCTG00005015671) MEN1 (ENSPCTG00005015906) Blue whale MODERN SPECIES 19 ENSBMSG00010008869 SLC22A6 (ENSBMSG00010008894) SLC22A8 (ENSBMSG00010008957) ENSBMSG00010008993 #7 ENSBMSG00010009002 #8 SLC22A9 (ENSBMSG00010009021) #9 PLAAT5 (ENSBMSG00010009039) #12 LGALS12 (ENSBMSG00010009076) #13 PLAAT3 (ENSBMSG00010009143) #15 ATL3 (ENSBMSG00010009168) #16 RTN3 (ENSBMSG00010009260) #17 ZFTA (ENSBMSG00010009395) #18 SPINDOC (ENSBMSG00010009408) #19 MARK2 (ENSBMSG00010009492) #20 RCOR2 (ENSBMSG00010010142) #21 NAA40 (ENSBMSG00010010195) #22 ENSBMSG00010010232 #23 OTUB1 (ENSBMSG00010010263) #24 MACROD1 (ENSBMSG00010010321) #25 FLRT1 (ENSBMSG00010010366) #26 STIP1 (ENSBMSG00010010388) #28 FERMT3 (ENSBMSG00010010420) #29 TRPT1 (ENSBMSG00010010488) #30 NUDT22 (ENSBMSG00010010592) #31 DNAJC4 (ENSBMSG00010010624) #32 VEGFB (ENSBMSG00010010670) #33 ENSBMSG00010010693 #34 ENSBMSG00010010781 PLCB3 (ENSBMSG00010010890) #36 BAD (ENSBMSG00010011016) #37 GPR137 (ENSBMSG00010011028) Camelidae ANCESTRAL SPECIES 18 ENSGT00940000154853.d #15 ENSGT00940000158566 #16 ENSGT00940000157482.d #17 ENSGT00600000084617 #18 ENSGT00410000025985 #19 ENSGT00940000155031 #20 ENSGT00940000154196.a #21 ENSGT00390000014903 #22 ENSGT00390000006255.b.b #23 ENSGT00390000006979.a #24 ENSGT00940000159375 #26 ENSGT00940000161450 #25 ENSGT00940000154911 #28 ENSGT00390000013444.a.b.b #29 ENSGT00390000002731 #30 ENSGT00390000017869 #31 ENSGT00510000048574 #32 ENSGT00940000161844 #33 ENSGT00940000157074 #34 ENSGT00950000182985.b.b #35 ENSGT00940000160539 #36 ENSGT00390000010740 #37 ENSGT00940000153986.b.b.h Arabian camel MODERN SPECIES 1 SLC22A8 (ENSCDRG00005020013) ENSCDRG00005019998 #8 ENSCDRG00005019949 #8 ENSCDRG00005019931 #9 ENSCDRG00005019903 #11 ENSCDRG00005019804 #12 LGALS12 (ENSCDRG00005019752) #13 ENSCDRG00005019739 PLAAT3 (ENSCDRG00005019659) #15 ATL3 (ENSCDRG00005019542) #16 RTN3 (ENSCDRG00005019397) #17 ZFTA (ENSCDRG00005019367) #18 SPINDOC (ENSCDRG00005019332) #19 MARK2 (ENSCDRG00005019188) #20 RCOR2 (ENSCDRG00005019145) #21 NAA40 (ENSCDRG00005019104) #22 COX8A (ENSCDRG00005019088) #23 OTUB1 (ENSCDRG00005018880) #24 FLRT1 (ENSCDRG00005018850) #26 MACROD1 (ENSCDRG00005018807) #25 STIP1 (ENSCDRG00005018758) #28 FERMT3 (ENSCDRG00005018709) #29 TRPT1 (ENSCDRG00005018663) #30 NUDT22 (ENSCDRG00005018604) #31 DNAJC4 (ENSCDRG00005018557) #32 VEGFB (ENSCDRG00005018496) #33 FKBP2 (ENSCDRG00005018432) #34 ENSCDRG00005018394 #35 PLCB3 (ENSCDRG00005018129) #36 BAD (ENSCDRG00005018063) #37 GPR137 (ENSCDRG00005017928) Alpaca MODERN SPECIES 548 NAA40 (ENSVPAG00000005889) #22 CGA (ENSVPAG00000005891)