Rodentia_B ANCESTRAL SPECIES 31 ENSGT00940000154102.b ENSGT00390000008631.b #7 ENSGT00940000155657 #8 ENSGT00390000015154 #9 ENSGT00940000162529 #10 ENSGT00940000158528 #11 ENSGT00940000153629.a.b #12 ENSGT01030000234637.b.c #13 ENSGT00940000159855 #14 ENSGT00390000003809 #15 ENSGT00940000161807 #16 ENSGT00390000013859 #17 ENSGT00940000162674 ENSGT00940000153763.a #19 ENSGT00940000153313.C.a #21 ENSGT00940000160459 #22 ENSGT00940000162262 #23 ENSGT00940000159479 #24 ENSGT00940000160940 #25 ENSGT00940000160559 #27 Myomorpha ANCESTRAL SPECIES 6 ENSGT00940000154102.b ENSGT00390000008631.b #7 ENSGT00940000155657 #8 ENSGT00390000015154 #9 ENSGT00940000162529 #10 ENSGT00940000158528 #11 ENSGT00940000153629.a.b #12 ENSGT01030000234637.b.c #13 ENSGT00940000159855 #14 ENSGT00390000003809 #15 ENSGT00940000161807 #16 ENSGT00390000013859 #17 ENSGT00940000162674 ENSGT00940000153763.a #19 ENSGT00940000153313.C.a #21 ENSGT00940000160459 #22 ENSGT00940000162262 #23 ENSGT00940000159479 #24 ENSGT00940000160940 #25 ENSGT00940000160559 #27 ENSGT00950000182925.D.a.b.a.a.a.b #36 ENSGT00390000004891 ENSGT00940000163673 ENSGT00940000162603 ENSGT00940000161062 ENSGT00950000183031.B.e.a ENSGT00940000162993 ENSGT00840000130063 ENSGT00940000163664 ENSGT00940000159912 ENSGT00530000063540.a Muroidea ANCESTRAL SPECIES 30 ENSGT00940000154102.b ENSGT00390000008631.b #7 ENSGT00940000155657 #8 ENSGT00390000015154 #9 ENSGT00940000162529 #10 ENSGT00940000158528 #11 ENSGT00940000153629.a.b #12 ENSGT01030000234637.b.c #13 ENSGT00940000159855 #14 ENSGT00390000003809 #15 ENSGT00940000161807 #16 ENSGT00390000013859 #17 ENSGT00940000162674 ENSGT00940000153763.a #19 ENSGT00940000153313.C.a #21 ENSGT00940000160459 #22 ENSGT00940000162262 #23 ENSGT00940000159479 #24 ENSGT00940000160940 #25 ENSGT00940000160559 #27 ENSGT00950000182925.D.a.b.a.a.a.b #36 ENSGT00390000004891 ENSGT00940000163673 ENSGT00940000162603 ENSGT00940000161062 ENSGT00950000183031.B.e.a ENSGT00940000162993 ENSGT00840000130063 ENSGT00940000163664 ENSGT00940000159912 ENSGT00530000063540.a Muroidea_A ANCESTRAL SPECIES 7 ENSGT00940000154102.b ENSGT00390000008631.b #7 ENSGT00940000155657 #8 ENSGT00390000015154 #9 ENSGT00940000162529 #10 ENSGT00940000158528 #11 ENSGT00940000153629.a.b #12 ENSGT01030000234637.b.c #13 ENSGT00940000159855 #14 ENSGT00390000003809 #15 ENSGT00940000161807 #16 ENSGT00390000013859 #17 ENSGT00940000162674 ENSGT00940000153763.a #19 ENSGT00940000153313.C.a #21 ENSGT00940000160459 #22 ENSGT00940000162262 #23 ENSGT00940000159479 #24 ENSGT00940000160940 #25 ENSGT00940000160559 #27 ENSGT00950000182925.D.a.b.a.a.a.b.a.a ##36 ENSGT00940000167111 ENSGT00390000004891 ENSGT00940000163673 ENSGT00940000162603 ENSGT00940000161062 ENSGT00950000183031.B.e.a ENSGT00940000162993 ENSGT00840000130063 ENSGT00940000163664 ENSGT00940000159912 Cricetidae ANCESTRAL SPECIES 8 ENSGT00940000154102.b ENSGT00390000008631.b #7 ENSGT00940000155657 #8 ENSGT00390000015154 #9 ENSGT00940000162529 #10 ENSGT00940000158528 #11 ENSGT00940000153629.a.b #12 ENSGT01030000234637.b.c #13 ENSGT00940000159855 #14 ENSGT00390000003809 #15 ENSGT00940000161807 #16 ENSGT00390000013859 #17 ENSGT00940000162674 ENSGT00940000153763.a #19 ENSGT00940000153313.C.a #21 ENSGT00940000160459 #22 ENSGT00940000162262 #23 ENSGT00940000159479 #24 ENSGT00940000160940 #25 ENSGT00940000160559 #27 ENSGT00950000182925.D.a.b.a.a.a.b.a.a ##36 ENSGT00940000167111 ENSGT00390000004891 ENSGT00940000163673 ENSGT00940000162603 ENSGT00940000161062 ENSGT00950000183031.B.e.a ENSGT00940000162993 ENSGT00840000130063 ENSGT00940000163664 ENSGT00940000159912 Cricetinae ANCESTRAL SPECIES 17 ENSGT00940000154102.b ENSGT00390000008631.b #7 ENSGT00940000155657 #8 ENSGT00390000015154 #9 ENSGT00940000162529 #10 ENSGT00940000158528 #11 ENSGT00940000153629.a.b #12 ENSGT01030000234637.b.c #13 ENSGT00940000159855 #14 ENSGT00390000003809 #15 ENSGT00940000161807 #16 ENSGT00390000013859 #17 ENSGT00940000162674 ENSGT00940000153763.a #19 ENSGT00940000153313.C.a #21 ENSGT00940000160459 #22 ENSGT00940000162262 #23 ENSGT00940000159479 #24 ENSGT00940000160940 #25 ENSGT00940000160559 #27 ENSGT00950000182925.D.a.b.a.a.a.b.a.b.a #37 ENSGT00950000182925.D.a.b.a.a.a.b.a.a ##36 ENSGT00940000167111 ENSGT00390000004891 ENSGT00940000163673 ENSGT00940000162603 ENSGT00940000161062 ENSGT00950000183031.B.e.a ENSGT00940000162993 ENSGT00840000130063 ENSGT00940000163664 Chinese hamster chok1gshd MODERN SPECIES 175 Praf2 (ENSCGRG00001017176) #7 Wdr45 (ENSCGRG00001012955) #8 Gpkow (ENSCGRG00001016210) #9 Magix (ENSCGRG00001015068) #10 ENSCGRG00001014295 #11 Prickle3 (ENSCGRG00001023920) #12 Syp (ENSCGRG00001016610) #13 Cacna1f (ENSCGRG00001013804) #14 Ccdc22 (ENSCGRG00001023162) #15 Foxp3 (ENSCGRG00001021426) #16 Ppp1r3f (ENSCGRG00001022530) #17 ENSCGRG00001006356 #18 Clcn5 (ENSCGRG00001017810) #19 ENSCGRG00001000058 #20 Akap4 (ENSCGRG00001022827) #21 Ccnb3 (ENSCGRG00001016975) #22 Dgkk (ENSCGRG00001005491) #23 Shroom4 (ENSCGRG00001016683) #24 Bmp15 (ENSCGRG00001012329) #25 ENSCGRG00001001286 #26 ENSCGRG00001009060 #27 ENSCGRG00001008851 #28 ENSCGRG00001007687 #29 ENSCGRG00001022547 #30 ENSCGRG00001007007 #31 ENSCGRG00001010729 #32 ENSCGRG00001000208 #33 ENSCGRG00001003982 #34 Mycs (ENSCGRG00001000792) #35 ENSCGRG00001023144 #36 ENSCGRG00001000978 #37 Golden Hamster MODERN SPECIES 799 Gripap1 (ENSMAUG00000009161) Tfe3 (ENSMAUG00000002865) Ccdc120 (ENSMAUG00000000888) Wdr45 (ENSMAUG00000011036) #8 Magix (ENSMAUG00000011901) #10 ENSMAUG00000019174 #11 Prickle3 (ENSMAUG00000014616) #12 Syp (ENSMAUG00000016225) #13 Cacna1f (ENSMAUG00000021438) #14 Ccdc22 (ENSMAUG00000019029) #15 Foxp3 (ENSMAUG00000016148) #16 Ppp1r3f (ENSMAUG00000009301) #17 Usp27x (ENSMAUG00000002688) Clcn5 (ENSMAUG00000008112) #19 ENSMAUG00000021928 #21 Ccnb3 (ENSMAUG00000004259) #22 Dgkk (ENSMAUG00000012411) #23 ENSMAUG00000007539 #24 Bmp15 (ENSMAUG00000013560) #25 ENSMAUG00000013990 #27 ENSMAUG00000014381 Cricetidae_B ANCESTRAL SPECIES 45 ENSGT00940000154102.b ENSGT00390000008631.b #7 ENSGT00940000155657 #8 ENSGT00390000015154 #9 ENSGT00940000162529 #10 ENSGT00940000158528 #11 ENSGT00940000153629.a.b #12 ENSGT01030000234637.b.c #13 ENSGT00940000159855 #14 ENSGT00390000003809 #15 ENSGT00940000161807 #16 ENSGT00390000013859 #17 ENSGT00940000162674 ENSGT00940000153763.a #19 ENSGT00940000153313.C.a #21 ENSGT00940000160459 #22 ENSGT00940000162262 #23 ENSGT00940000159479 #24 ENSGT00940000160940 #25 ENSGT00940000160559 #27 Northern American deer mouse MODERN SPECIES 475 Ccdc120 (ENSPEMG00000027723) Praf2 (ENSPEMG00000029377) #7 Wdr45 (ENSPEMG00000015281) #8 Gpkow (ENSPEMG00000009966) #9 Magix (ENSPEMG00000025490) #10 ENSPEMG00000012167 #11 Prickle3 (ENSPEMG00000005910) #12 Syp (ENSPEMG00000007762) #13 Cacna1f (ENSPEMG00000009739) #14 Ccdc22 (ENSPEMG00000015959) #15 Foxp3 (ENSPEMG00000012847) #16 Ppp1r3f (ENSPEMG00000015653) #17 Usp27x (ENSPEMG00000005635) Clcn5 (ENSPEMG00000011139) #19 Akap4 (ENSPEMG00000023845) #21 Ccnb3 (ENSPEMG00000022596) #22 Dgkk (ENSPEMG00000022777) #23 ENSPEMG00000028579 Shroom4 (ENSPEMG00000022302) #24 Bmp15 (ENSPEMG00000026057) #25 ENSPEMG00000027174 #27 ENSPEMG00000031215 #27 ENSPEMG00000025360 ENSPEMG00000030440 ENSPEMG00000030562 #31 ENSPEMG00000016072 Mycs (ENSPEMG00000026712) #35 ENSPEMG00000024891 ENSPEMG00000027395 Usp51 (ENSPEMG00000022623) Mageh1 (ENSPEMG00000003236) Prairie vole MODERN SPECIES 1 Wdr45 (ENSMOCG00000014028) #8 ENSMOCG00000004994 Gpkow (ENSMOCG00000019251) #9 Magix (ENSMOCG00000016030) #10 ENSMOCG00000013471 #11 Prickle3 (ENSMOCG00000022909) #12 Syp (ENSMOCG00000001534) #13 Cacna1f (ENSMOCG00000003974) #14 Ccdc22 (ENSMOCG00000012776) #15 Foxp3 (ENSMOCG00000008698) #16 Ppp1r3f (ENSMOCG00000002362) #17 Usp27x (ENSMOCG00000006681) ENSMOCG00000013352 ##30 Clcn5 (ENSMOCG00000015506) #19 Akap4 (ENSMOCG00000018265) #21 Ccnb3 (ENSMOCG00000002143) #22 Dgkk (ENSMOCG00000019385) #23 Shroom4 (ENSMOCG00000014195) #24 Bmp15 (ENSMOCG00000000837) #25 ENSMOCG00000022364 #27 ENSMOCG00000007014 ENSMOCG00000000673 #27 ENSMOCG00000017305 Hook1 (ENSMOCG00000020291) ENSMOCG00000016214 Fggy (ENSMOCG00000017533) Jun (ENSMOCG00000006483) Mysm1 (ENSMOCG00000001327) Eqtn (ENSMOCG00000018858) Tek (ENSMOCG00000017310) Lrrc19 (ENSMOCG00000008422) Murinae ANCESTRAL SPECIES 33 ENSGT00940000154102.b ENSGT00390000008631.b #7 ENSGT00940000155657 #8 ENSGT00390000015154 #9 ENSGT00940000162529 #10 ENSGT00940000158528 #11 ENSGT00940000153629.a.b #12 ENSGT01030000234637.b.c #13 ENSGT00940000159855 #14 ENSGT00390000003809 #15 ENSGT00940000161807 #16 ENSGT00390000013859 #17 ENSGT00940000162674 ENSGT00940000153763.a #19 ENSGT00940000153313.C.a #21 ENSGT00940000160459 #22 ENSGT00940000162262 #23 ENSGT00940000159479 #24 ENSGT00940000160940 #25 ENSGT00940000160559 #27 ENSGT00730000112586 Mus ANCESTRAL SPECIES 9 ENSGT00940000154102.b ENSGT00390000008631.b #7 ENSGT00940000155657 #8 ENSGT00390000015154 #9 ENSGT00940000162529 #10 ENSGT00940000158528 #11 ENSGT00940000153629.a.b #12 ENSGT01030000234637.b.c #13 ENSGT00940000159855 #14 ENSGT00390000003809 #15 ENSGT00940000161807 #16 ENSGT00390000013859 #17 ENSGT00940000162674 ENSGT00940000153763.a #19 ENSGT00940000153313.C.a #21 ENSGT00940000160459 #22 ENSGT00940000162262 #23 ENSGT00940000159479 #24 ENSGT00940000160940 #25 ENSGT00940000160559 #27 ENSGT00730000112586 Mus_A ANCESTRAL SPECIES 15 ENSGT00940000154102.b ENSGT00390000008631.b #7 ENSGT00940000155657 #8 ENSGT00390000015154 #9 ENSGT00940000162529 #10 ENSGT00940000158528 #11 ENSGT00940000153629.a.b #12 ENSGT01030000234637.b.c #13 ENSGT00940000159855 #14 ENSGT00390000003809 #15 ENSGT00940000161807 #16 ENSGT00390000013859 #17 ENSGT00940000162674 ENSGT00940000153763.a #19 ENSGT00940000153313.C.a #21 ENSGT00940000160459 #22 ENSGT00940000162262 #23 ENSGT00940000159479 #24 ENSGT00940000160940 #25 ENSGT00940000160559 #27 ENSGT00730000112586 Mus_B ANCESTRAL SPECIES 14 ENSGT00940000154102.b ENSGT00390000008631.b #7 ENSGT00940000155657 #8 ENSGT00390000015154 #9 ENSGT00940000162529 #10 ENSGT00940000158528 #11 ENSGT00940000153629.a.b #12 ENSGT01030000234637.b.c #13 ENSGT00940000159855 #14 ENSGT00390000003809 #15 ENSGT00940000161807 #16 ENSGT00390000013859 #17 ENSGT00940000162674 ENSGT00940000153763.a #19 ENSGT00940000153313.C.a #21 ENSGT00940000160459 #22 ENSGT00940000162262 #23 ENSGT00940000159479 #24 ENSGT00940000160940 #25 ENSGT00940000160559 #27 ENSGT00730000112586 ENSGT00940000163246 #31 ENSGT00940000158432.bb.b.a #35 Mouse MODERN SPECIES 37 Praf2 (ENSMUSG00000031149) #7 Gm45208 (ENSMUSG00000109493) Wdr45 (ENSMUSG00000039382) #8 Gpkow (ENSMUSG00000031148) #9 Magix (ENSMUSG00000031147) #10 Plp2 (ENSMUSG00000031146) #11 Prickle3 (ENSMUSG00000031145) #12 Syp (ENSMUSG00000031144) #13 Cacna1f (ENSMUSG00000031142) #14 Ccdc22 (ENSMUSG00000031143) #15 Foxp3 (ENSMUSG00000039521) #16 Ppp1r3f (ENSMUSG00000039556) #17 Usp27x (ENSMUSG00000046269) Clcn5 (ENSMUSG00000004317) #19 Akap4 (ENSMUSG00000050089) #21 Ccnb3 (ENSMUSG00000051592) #22 Dgkk (ENSMUSG00000062393) #23 Shroom4 (ENSMUSG00000068270) #24 Bmp15 (ENSMUSG00000023279) #25 Nudt10 (ENSMUSG00000073293) #27 Ezhip (ENSMUSG00000073294) Nudt11 (ENSMUSG00000073295) #27 Btbd35f7 (ENSMUSG00000095814) #31 Mycs (ENSMUSG00000044597) #35 Btbd35f27 (ENSMUSG00000094860) #31 Btbd35f4 (ENSMUSG00000078213) #31 Btbd35f17 (ENSMUSG00000094273) #31 Btbd35f20 (ENSMUSG00000094596) #31 Btbd35f28 (ENSMUSG00000094307) #31 Btbd35f3 (ENSMUSG00000078218) #31 Btbd35f16 (ENSMUSG00000101381) #31 Mus_C ANCESTRAL SPECIES 27 ENSGT00940000154102.b ENSGT00390000008631.b #7 ENSGT00940000155657 #8 ENSGT00390000015154 #9 ENSGT00940000162529 #10 ENSGT00940000158528 #11 ENSGT00940000153629.a.b #12 ENSGT01030000234637.b.c #13 ENSGT00940000159855 #14 ENSGT00390000003809 #15 ENSGT00940000161807 #16 ENSGT00390000013859 #17 ENSGT00940000162674 ENSGT00940000153763.a #19 ENSGT00940000153313.C.a #21 ENSGT00940000160459 #22 ENSGT00940000162262 #23 ENSGT00940000159479 #24 ENSGT00940000160940 #25 ENSGT00940000160559 #27 ENSGT00730000112586 ENSGT00940000163246 #31 ENSGT00940000158432.bb.b.a #35 Steppe mouse MODERN SPECIES 2440 Clcn5 (ENSMSIG00000031435) #19 Akap4 (ENSMSIG00000031432) #21 Ccnb3 (ENSMSIG00000031429) #22 ENSMSIG00000031424 #23 spretus MODERN SPECIES 19 Praf2 (MGP_SPRETEiJ_G0034043) #7 Wdr45 (MGP_SPRETEiJ_G0034042) #8 MGP_SPRETEiJ_G0034041 #9 Magix (MGP_SPRETEiJ_G0034040) #10 MGP_SPRETEiJ_G0034038 #11 MGP_SPRETEiJ_G0034039 #11 Prickle3 (MGP_SPRETEiJ_G0034037) #12 Syp (MGP_SPRETEiJ_G0034036) #13 Cacna1f (MGP_SPRETEiJ_G0034035) #14 Ccdc22 (MGP_SPRETEiJ_G0034034) #15 Foxp3 (MGP_SPRETEiJ_G0034033) #16 Ppp1r3f (MGP_SPRETEiJ_G0034032) #17 Usp27x (MGP_SPRETEiJ_G0034031) Clcn5 (MGP_SPRETEiJ_G0034030) #19 Akap4 (MGP_SPRETEiJ_G0034029) #21 Ccnb3 (MGP_SPRETEiJ_G0034028) #22 Dgkk (MGP_SPRETEiJ_G0034027) #23 Shroom4 (MGP_SPRETEiJ_G0034026) #24 Bmp15 (MGP_SPRETEiJ_G0034025) #25 MGP_SPRETEiJ_G0034024 #27 Ezhip (MGP_SPRETEiJ_G0034023) Mycs (MGP_SPRETEiJ_G0034022) #35 Ryukyu mouse MODERN SPECIES 19 Praf2 (MGP_CAROLIEiJ_G0032895) #7 Wdr45 (MGP_CAROLIEiJ_G0032894) #8 Gpkow (MGP_CAROLIEiJ_G0032893) #9 Magix (MGP_CAROLIEiJ_G0032892) #10 MGP_CAROLIEiJ_G0032890 #11 MGP_CAROLIEiJ_G0032891 #11 Prickle3 (MGP_CAROLIEiJ_G0032889) #12 Syp (MGP_CAROLIEiJ_G0032888) #13 Cacna1f (MGP_CAROLIEiJ_G0032887) #14 Ccdc22 (MGP_CAROLIEiJ_G0032886) #15 Foxp3 (MGP_CAROLIEiJ_G0032885) #16 Ppp1r3f (MGP_CAROLIEiJ_G0032884) #17 Usp27x (MGP_CAROLIEiJ_G0032883) Clcn5 (MGP_CAROLIEiJ_G0032882) #19 Akap4 (MGP_CAROLIEiJ_G0032881) #21 Ccnb3 (MGP_CAROLIEiJ_G0032880) #22 Dgkk (MGP_CAROLIEiJ_G0032879) #23 Shroom4 (MGP_CAROLIEiJ_G0032878) #24 Bmp15 (MGP_CAROLIEiJ_G0032877) #25 Ezhip (MGP_CAROLIEiJ_G0032876) MGP_CAROLIEiJ_G0032875 #27 Shrew mouse MODERN SPECIES 23 Praf2 (MGP_PahariEiJ_G0031443) #7 Wdr45 (MGP_PahariEiJ_G0031442) #8 Gpkow (MGP_PahariEiJ_G0031441) #9 Magix (MGP_PahariEiJ_G0031440) #10 MGP_PahariEiJ_G0031438 #11 MGP_PahariEiJ_G0031439 #11 Prickle3 (MGP_PahariEiJ_G0031437) #12 Syp (MGP_PahariEiJ_G0031436) #13 Cacna1f (MGP_PahariEiJ_G0031435) #14 Ccdc22 (MGP_PahariEiJ_G0031434) #15 Foxp3 (MGP_PahariEiJ_G0031433) #16 Ppp1r3f (MGP_PahariEiJ_G0031432) #17 Usp27x (MGP_PahariEiJ_G0031431) Clcn5 (MGP_PahariEiJ_G0031430) #19 Akap4 (MGP_PahariEiJ_G0031429) #21 Ccnb3 (MGP_PahariEiJ_G0031428) #22 Dgkk (MGP_PahariEiJ_G0031427) #23 Shroom4 (MGP_PahariEiJ_G0031426) #24 Bmp15 (MGP_PahariEiJ_G0031425) #25 MGP_PahariEiJ_G0031424 #27 Rat MODERN SPECIES 46 Gpkow (ENSRNOG00000022939) #9 Magix (ENSRNOG00000010092) #10 Plp2 (ENSRNOG00000039496) #11 Prickle3 (ENSRNOG00000022417) #12 Syp (ENSRNOG00000059720) #13 Cacna1f (ENSRNOG00000010348) #14 Ccdc22 (ENSRNOG00000010846) #15 Foxp3 (ENSRNOG00000011702) #16 Ppp1r3f (ENSRNOG00000068767) #17 ENSRNOG00000066758 ENSRNOG00000065488 AABR07037203.1 (ENSRNOG00000028611) Usp27x (ENSRNOG00000002844) Clcn5 (ENSRNOG00000002862) #19 Akap4 (ENSRNOG00000002921) #21 Ccnb3 (ENSRNOG00000002951) #22 Dgkk (ENSRNOG00000039323) #23 Cpsf4-ps1 (ENSRNOG00000062241) Shroom4 (ENSRNOG00000002959) #24 AABR07037243.1 (ENSRNOG00000002975) Bmp15 (ENSRNOG00000002984) #25 Nudt11 (ENSRNOG00000046053) #27 Ezhip (ENSRNOG00000039305) Smptb (ENSRNOG00000028033) Smptb (ENSRNOG00000066859) ENSRNOG00000067767 LOC120099275 (ENSRNOG00000030417) #31 LOC302576 (ENSRNOG00000066885) #31 Mycs (ENSRNOG00000003085) #35 ENSRNOG00000063942 ENSRNOG00000069398