Euarchontoglires_A	ANCESTRAL SPECIES	4	ENSGT01060000250264	ENSGT00940000154849.a	ENSGT00390000007830 #10	ENSGT00940000159596 #11	ENSGT00940000156438 #12	ENSGT00390000007247 #13	ENSGT01100000263482.D #14	ENSGT01100000263482.B ##14	ENSGT01100000263482.C.c.b.a.b.b ##14	ENSGT01100000263482.C.c.b.a.b.a ##14	ENSGT01100000263482.C.c.b.a.a ##14	ENSGT01100000263482.C.c.b.b.a.b #17	ENSGT01100000263482.C.c.a #18	ENSGT00530000064879 #19	ENSGT00520000060616 #21	ENSGT00390000016675 #22	ENSGT00940000153818.a.b.a.b #23	ENSGT00550000074863 #24	ENSGT00390000010789 #25	ENSGT00940000160675 #26	ENSGT00940000156751 #27	ENSGT00390000008122 #28	ENSGT00940000156706 #29	ENSGT00390000000288 #30	ENSGT00940000160834 #31	ENSGT00390000018761	ENSGT00840000129887	ENSGT00390000009552	ENSGT00390000013520	ENSGT00940000157382	ENSGT00390000010822
Glires	ANCESTRAL SPECIES	3	ENSGT00940000154849.a	ENSGT00390000007830 #10	ENSGT00940000159596 #11	ENSGT00940000156438 #12	ENSGT00390000007247 #13	ENSGT01100000263482.D #14	ENSGT01100000263482.B ##14	ENSGT01100000263482.C.c.b.a.b.b ##14	ENSGT01100000263482.C.c.b.a.b.a ##14	ENSGT01100000263482.C.c.b.a.a ##14	ENSGT00940000165476 #15	ENSGT01100000263482.C.c.b.b.a.b #17	ENSGT01100000263482.C.c.a #18	ENSGT00530000064879 #19	ENSGT00520000060616 #21	ENSGT00390000016675 #22	ENSGT00940000153818.a.b.a.b #23	ENSGT00550000074863 #24	ENSGT00390000010789 #25	ENSGT00940000160675 #26	ENSGT00940000156751 #27	ENSGT00390000008122 #28	ENSGT00940000156706 #29	ENSGT00390000000288 #30	ENSGT00940000160834 #31	ENSGT00390000018761	ENSGT00840000129887	ENSGT00390000009552	ENSGT00390000013520	ENSGT00940000157382	ENSGT00390000010822
Rodentia	ANCESTRAL SPECIES	4	ENSGT00940000154849.a	ENSGT00390000007830 #10	ENSGT00940000159596 #11	ENSGT00940000156438 #12	ENSGT00390000007247 #13	ENSGT01100000263482.D #14	ENSGT01100000263482.B ##14	ENSGT01100000263482.C.c.b.a.b.b ##14	ENSGT01100000263482.C.c.b.a.b.a ##14	ENSGT01100000263482.C.c.b.a.a ##14	ENSGT00940000165476 #15	ENSGT01100000263482.C.c.b.b.a.b #17	ENSGT01100000263482.C.c.a #18	ENSGT00530000064879 #19	ENSGT00520000060616 #21	ENSGT00390000016675 #22	ENSGT00940000153818.a.b.a.b #23	ENSGT00550000074863 #24	ENSGT00390000010789 #25	ENSGT00940000160675 #26	ENSGT00940000156751 #27	ENSGT00390000008122 #28	ENSGT00940000156706 #29	ENSGT00390000000288 #30	ENSGT00940000160834 #31	ENSGT00390000018761	ENSGT00840000129887	ENSGT00390000009552	ENSGT00390000013520	ENSGT00940000157382	ENSGT00390000010822
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00390000016209	ENSGT00940000155206.d #7	ENSGT00940000160764 #8	ENSGT00940000162866 #9	ENSGT00390000007830 #10	ENSGT00940000159596 #11	ENSGT00940000156438 #12	ENSGT00390000007247 #13	ENSGT01100000263482.D #14	ENSGT00940000165476 #15	ENSGT01100000263482.C.c.b.a.b.a ##14	ENSGT01100000263482.C.c.b.b.a.b #17	ENSGT01100000263482.C.c.a #18	ENSGT00530000064879 #19	ENSGT00520000060616 #21	ENSGT00390000016675 #22	ENSGT00940000153818.a.b.a.b #23	ENSGT00550000074863 #24	ENSGT00390000010789 #25	ENSGT00940000160675 #26	ENSGT00940000156751 #27	ENSGT00390000008122 #28	ENSGT00940000156706 #29	ENSGT00390000000288 #30	ENSGT00940000160834 #31	ENSGT00390000018761	ENSGT00840000129887	ENSGT00390000009552	ENSGT00390000013520	ENSGT00940000157382	ENSGT00390000010822
Myomorpha	ANCESTRAL SPECIES		ENSGT00390000016209	ENSGT00940000155206.d #7	ENSGT00940000160764 #8	ENSGT00940000162866 #9	ENSGT00390000007830 #10	ENSGT00940000159596 #11	ENSGT00940000156438 #12	ENSGT00390000007247 #13	ENSGT01100000263482.D #14	ENSGT00940000165476 #15	ENSGT01100000263482.C.c.b.a.b.a ##14	ENSGT01100000263482.C.c.b.b.a.b #17	ENSGT01100000263482.C.c.a #18	ENSGT00530000064879 #19	ENSGT00520000060616 #21	ENSGT00390000016675 #22	ENSGT00940000153818.a.b.a.b #23	ENSGT00550000074863 #24	ENSGT00390000010789 #25	ENSGT00940000160675 #26	ENSGT00940000156751 #27	ENSGT00390000008122 #28	ENSGT00940000156706 #29	ENSGT00390000000288 #30	ENSGT00940000160834 #31	ENSGT00390000018761	ENSGT00840000129887	ENSGT00390000009552	ENSGT00390000013520	ENSGT00940000157382	ENSGT00390000010822
Muroidea	ANCESTRAL SPECIES		ENSGT00390000016209	ENSGT00940000155206.d #7	ENSGT00940000160764 #8	ENSGT00940000162866 #9	ENSGT00390000007830 #10	ENSGT00940000159596 #11	ENSGT00940000156438 #12	ENSGT00390000007247 #13	ENSGT01100000263482.D #14	ENSGT01100000263482.C.c.b.a.b.a ##14	ENSGT00940000165476 #15	ENSGT01100000263482.C.c.b.b.a.b #17	ENSGT01100000263482.C.c.a #18	ENSGT00530000064879 #19	ENSGT00520000060616 #21	ENSGT00390000016675 #22	ENSGT00940000153818.a.b.a.b #23	ENSGT00550000074863 #24	ENSGT00390000010789 #25	ENSGT00940000160675 #26	ENSGT00940000156751 #27	ENSGT00390000008122 #28	ENSGT00940000156706 #29	ENSGT00390000000288 #30	ENSGT00940000160834 #31	ENSGT00390000018761	ENSGT00840000129887	ENSGT00390000009552	ENSGT00390000013520	ENSGT00940000157382	ENSGT00390000010822
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00390000016209	ENSGT00940000155206.d #7	ENSGT00940000160764 #8	ENSGT00940000162866 #9	ENSGT00390000007830 #10	ENSGT00940000159596 #11	ENSGT00940000156438 #12	ENSGT00390000007247 #13	ENSGT01100000263482.D #14	ENSGT01100000263482.C.c.b.a.b.a.m ##14	ENSGT01100000263482.C.c.b.a.b.a.n ##14	ENSGT01100000263482.C.c.b.b.a.b #17	ENSGT01100000263482.C.c.a #18	ENSGT00530000064879 #19	ENSGT00520000060616 #21	ENSGT00390000016675 #22	ENSGT00940000153818.a.b.a.b #23	ENSGT00550000074863 #24	ENSGT00390000010789 #25	ENSGT00940000160675 #26	ENSGT00940000156751 #27	ENSGT00390000008122 #28	ENSGT00940000156706 #29	ENSGT00390000000288 #30	ENSGT00940000160834 #31	ENSGT00390000018761	ENSGT00840000129887	ENSGT00390000009552	ENSGT00390000013520	ENSGT00940000157382	ENSGT00390000010822
Cricetidae	ANCESTRAL SPECIES		ENSGT00390000016209	ENSGT00940000155206.d #7	ENSGT00940000160764 #8	ENSGT00940000162866 #9	ENSGT00390000007830 #10	ENSGT00940000159596 #11	ENSGT00940000156438 #12	ENSGT00390000007247 #13	ENSGT01100000263482.D #14	ENSGT01100000263482.C.c.b.a.b.a.m ##14	ENSGT01100000263482.C.c.b.a.b.a.n ##14	ENSGT01100000263482.C.c.b.b.a.b #17	ENSGT01100000263482.C.c.a #18	ENSGT00530000064879.e #19	ENSGT00520000060616 #21	ENSGT00390000016675 #22	ENSGT00940000153818.a.b.a.b #23	ENSGT00550000074863 #24	ENSGT00390000010789 #25	ENSGT00940000160675 #26	ENSGT00940000156751 #27	ENSGT00390000008122 #28	ENSGT00940000156706 #29	ENSGT00390000000288 #30	ENSGT00940000160834 #31	ENSGT00390000018761	ENSGT00840000129887	ENSGT00390000009552	ENSGT00390000013520	ENSGT00940000157382	ENSGT00390000010822
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00390000016209	ENSGT00940000155206.d #7	ENSGT00940000160764 #8	ENSGT00940000162866 #9	ENSGT00390000007830 #10	ENSGT00940000159596 #11	ENSGT00940000156438 #12	ENSGT00390000007247 #13	ENSGT01100000263482.D #14	ENSGT01100000263482.C.c.b.a.b.a.m ##14	ENSGT01100000263482.C.c.b.a.b.a.n ##14	ENSGT01100000263482.C.c.b.b.a.b #17	ENSGT01100000263482.C.c.a #18	ENSGT00530000064879.e #19	ENSGT00520000060616 #21	ENSGT00390000016675 #22	ENSGT00940000153818.a.b.a.b #23	ENSGT00550000074863 #24	ENSGT00390000010789 #25	ENSGT00940000160675 #26	ENSGT00940000156751 #27	ENSGT00390000008122 #28	ENSGT00940000156706 #29	ENSGT00390000000288 #30	ENSGT00940000160834 #31	ENSGT00390000018761	ENSGT00840000129887	ENSGT00390000009552	ENSGT00390000013520	ENSGT00940000157382	ENSGT00390000010822
Prairie vole	MODERN SPECIES	15	Ap2b1 (ENSMOCG00000014475) #7	Rasl10b (ENSMOCG00000001964) #8	Gas2l2 (ENSMOCG00000005581) #9	1700020L24Rik (ENSMOCG00000019897) #10	Mmp28 (ENSMOCG00000018460) #11	Taf15 (ENSMOCG00000015121) #12	Heatr9 (ENSMOCG00000009616) #13	Ccl5 (ENSMOCG00000020386) #14	ENSMOCG00000002418 #15	ENSMOCG00000012772 #16	ENSMOCG00000013583 #17	Ccl4 (ENSMOCG00000012149) #18	ENSMOCG00000013687 #19	ENSMOCG00000016372 #20	Wfdc21 (ENSMOCG00000019007) #21	Heatr6 (ENSMOCG00000015431) #22	Hnf1b (ENSMOCG00000012217) #23	Ddx52 (ENSMOCG00000009654) #24	Synrg (ENSMOCG00000021006) #25	Dusp14 (ENSMOCG00000011337) #26	Tada2a (ENSMOCG00000007050) #27	Gm11437 (ENSMOCG00000015056) #28	Acaca (ENSMOCG00000006469) #29	Aatf (ENSMOCG00000021199) #30	Lhx1 (ENSMOCG00000012864) #31	ENSMOCG00000021004 #32	Shisa9 (ENSMOCG00000022752) #33	Cpped1 (ENSMOCG00000002062) #34	ENSMOCG00000021741 #35	Snx29 (ENSMOCG00000006809) #36	Tnfrsf17 (ENSMOCG00000013695) #37
Northern American deer mouse	MODERN SPECIES	21	Heatr9 (ENSPEMG00000009167) #13	Ccl5 (ENSPEMG00000008561) #14	Ccl9 (ENSPEMG00000028232) ##14	Ccl6 (ENSPEMG00000008169) ##14	Ccl3 (ENSPEMG00000028000) #17	ENSPEMG00000030825 #18	ENSPEMG00000026681 #19	ENSPEMG00000027305 #18	ENSPEMG00000025016 #18	ENSPEMG00000028019 #18	ENSPEMG00000026902 #18	ENSPEMG00000022266 #19	ENSPEMG00000021998 #19	ENSPEMG00000021537 #18	Wfdc21 (ENSPEMG00000025133) #21	Heatr6 (ENSPEMG00000022934) #22	Hnf1b (ENSPEMG00000023625) #23	Ddx52 (ENSPEMG00000003263) #24	Synrg (ENSPEMG00000025919) #25	Dusp14 (ENSPEMG00000030837) #26	Tada2a (ENSPEMG00000022544) #27	Gm11437 (ENSPEMG00000021648) #28	Acaca (ENSPEMG00000023800) #29	Aatf (ENSPEMG00000022006) #30	Lhx1 (ENSPEMG00000024834) #31	Mrm1 (ENSPEMG00000030596)	Dhrs11 (ENSPEMG00000021946)	Ggnbp2 (ENSPEMG00000022930)	Pigw (ENSPEMG00000023553)	Myo19 (ENSPEMG00000022948)	Znhit3 (ENSPEMG00000028356)
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000160764 #8	ENSGT00940000162866 #9	ENSGT00390000007830 #10	ENSGT00940000159596 #11	ENSGT00940000156438 #12	ENSGT00390000007247 #13	ENSGT01100000263482.D #14	ENSGT00940000165476.d #15	ENSGT00940000165476.c #16	ENSGT01100000263482.C.c.b.a.b.a.n ##14	ENSGT01100000263482.C.c.b.b.a.b #17	ENSGT01100000263482.C.c.a #18	ENSGT00530000064879.e #19	ENSGT00530000064879.f ##19	ENSGT00520000060616 #21	ENSGT00390000016675 #22	ENSGT00940000153818.a.b.a.b #23	ENSGT00550000074863 #24	ENSGT00390000010789 #25	ENSGT00940000160675 #26	ENSGT00940000156751 #27	ENSGT00390000008122 #28	ENSGT00940000156706 #29	ENSGT00390000000288 #30	ENSGT00940000160834 #31	ENSGT00390000018761	ENSGT00840000129887	ENSGT00390000009552	ENSGT00390000013520	ENSGT00940000157382	ENSGT00390000010822
Chinese hamster chok1gshd	MODERN SPECIES	33	Ap2b1 (ENSCGRG00001020053) #7	Rasl10b (ENSCGRG00001010269) #8	Gas2l2 (ENSCGRG00001022937) #9	1700020L24Rik (ENSCGRG00001006404) #10	Mmp28 (ENSCGRG00001013370) #11	Taf15 (ENSCGRG00001012011) #12	Heatr9 (ENSCGRG00001019308) #13	Ccl5 (ENSCGRG00001017129) #14	ENSCGRG00001017750 #15	Ccl6 (ENSCGRG00001008290) ##14	Ccl3 (ENSCGRG00001019421) #17	Ccl4 (ENSCGRG00001020791) #18	ENSCGRG00001018407 #19	ENSCGRG00001019205 ##19	Wfdc21 (ENSCGRG00001020449) #21	Heatr6 (ENSCGRG00001000753) #22	Hnf1b (ENSCGRG00001022328) #23	Ddx52 (ENSCGRG00001020695) #24	Synrg (ENSCGRG00001021744) #25	Dusp14 (ENSCGRG00001010127) #26	Tada2a (ENSCGRG00001018460) #27	Acaca (ENSCGRG00001022253) #29	Gm11437 (ENSCGRG00001012632) #28	Aatf (ENSCGRG00001005527) #30	Lhx1 (ENSCGRG00001018330) #31	Mrm1 (ENSCGRG00001001937)	Dhrs11 (ENSCGRG00001017376)	Ggnbp2 (ENSCGRG00001004400)	Pigw (ENSCGRG00001001433)	Myo19 (ENSCGRG00001016014)	ENSCGRG00001019811
Golden Hamster	MODERN SPECIES	684	Slfn1 (ENSMAUG00000003013)	Slfn14 (ENSMAUG00000020439)	Pex12 (ENSMAUG00000004768)	Ap2b1 (ENSMAUG00000021295) #7	Rasl10b (ENSMAUG00000011536) #8	Gas2l2 (ENSMAUG00000001264) #9	ENSMAUG00000018386 #12	Heatr9 (ENSMAUG00000019408) #13	Ccl5 (ENSMAUG00000000781) #14	ENSMAUG00000021412 #15	ENSMAUG00000015635 #16	Ccl3 (ENSMAUG00000021167) #17	Ccl4 (ENSMAUG00000020742) #18	ENSMAUG00000009975 #20	Wfdc21 (ENSMAUG00000018673) #21	Heatr6 (ENSMAUG00000009627) #22	Hnf1b (ENSMAUG00000009573) #23	ENSMAUG00000007943	Ddx52 (ENSMAUG00000021084) #24	Synrg (ENSMAUG00000015507) #25	Dusp14 (ENSMAUG00000015817) #26	Tada2a (ENSMAUG00000009253) #27	Gm11437 (ENSMAUG00000013814) #28	Acaca (ENSMAUG00000017414) #29	Aatf (ENSMAUG00000004548) #30	Lhx1 (ENSMAUG00000003621) #31	Mrm1 (ENSMAUG00000020976)	Dhrs11 (ENSMAUG00000011459)	Ggnbp2 (ENSMAUG00000020953)	Pigw (ENSMAUG00000022126)	Myo19 (ENSMAUG00000008695)
Murinae	ANCESTRAL SPECIES	6	ENSGT00940000155206.d #7	ENSGT00940000160764 #8	ENSGT00940000162866 #9	ENSGT00390000007830 #10	ENSGT00940000159596 #11	ENSGT00940000156438 #12	ENSGT00390000007247 #13	ENSGT01100000263482.D #14	ENSGT01100000263482.C.c.b.a.b.a.m ##14	ENSGT01100000263482.C.c.b.a.b.a.n ##14	ENSGT01100000263482.C.c.b.b.a.b #17	ENSGT01100000263482.C.c.a #18	ENSGT00530000064879.g #19	ENSGT00530000064879.h #19	ENSGT00520000060616 #21	ENSGT00390000016675 #22	ENSGT00940000153818.a.b.a.b #23	ENSGT00550000074863 #24	ENSGT00390000010789 #25	ENSGT00940000160675 #26	ENSGT00940000156751 #27	ENSGT00390000008122 #28	ENSGT00940000156706 #29	ENSGT00390000000288 #30	ENSGT00940000160834 #31	ENSGT00390000018761	ENSGT00840000129887	ENSGT00390000009552	ENSGT00390000013520	ENSGT00940000157382	ENSGT00390000010822
Mus	ANCESTRAL SPECIES	2	ENSGT00940000155206.d #7	ENSGT00940000160764 #8	ENSGT00940000162866 #9	ENSGT00390000007830 #10	ENSGT00940000159596 #11	ENSGT00940000156438 #12	ENSGT00390000007247 #13	ENSGT01100000263482.D #14	ENSGT01100000263482.C.c.b.a.b.a.m ##14	ENSGT01100000263482.C.c.b.a.b.a.n ##14	ENSGT01100000263482.C.c.b.b.a.b #17	ENSGT01100000263482.C.c.a #18	ENSGT00530000064879.g #19	ENSGT00530000064879.h #19	ENSGT00520000060616 #21	ENSGT00390000016675 #22	ENSGT00940000153818.a.b.a.b #23	ENSGT00550000074863 #24	ENSGT00390000010789 #25	ENSGT00940000160675 #26	ENSGT00940000156751 #27	ENSGT00390000008122 #28	ENSGT00940000156706 #29	ENSGT00390000000288 #30	ENSGT00940000160834 #31	ENSGT00390000018761	ENSGT00840000129887	ENSGT00390000009552	ENSGT00390000013520	ENSGT00940000157382	ENSGT00390000010822
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000155206.d #7	ENSGT00940000160764 #8	ENSGT00940000162866 #9	ENSGT00390000007830 #10	ENSGT00940000159596 #11	ENSGT00940000156438 #12	ENSGT00390000007247 #13	ENSGT01100000263482.D #14	ENSGT01100000263482.C.c.b.a.b.a.m ##14	ENSGT01100000263482.C.c.b.a.b.a.n ##14	ENSGT01100000263482.C.c.b.b.a.b #17	ENSGT01100000263482.C.c.a #18	ENSGT00530000064879.g.c #19	ENSGT00530000064879.h #19	ENSGT00520000060616 #21	ENSGT00390000016675 #22	ENSGT00940000153818.a.b.a.b #23	ENSGT00550000074863 #24	ENSGT00390000010789 #25	ENSGT00940000160675 #26	ENSGT00940000156751 #27	ENSGT00390000008122 #28	ENSGT00940000156706 #29	ENSGT00390000000288 #30	ENSGT00940000160834 #31	ENSGT00390000018761	ENSGT00840000129887	ENSGT00390000009552	ENSGT00390000013520	ENSGT00940000157382	ENSGT00390000010822
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000155206.d #7	ENSGT00940000160764 #8	ENSGT00940000162866 #9	ENSGT00390000007830 #10	ENSGT00940000159596 #11	ENSGT00940000156438 #12	ENSGT00390000007247 #13	ENSGT01100000263482.D #14	ENSGT01100000263482.C.c.b.a.b.a.m ##14	ENSGT01100000263482.C.c.b.a.b.a.n ##14	ENSGT01100000263482.C.c.b.b.a.b #17	ENSGT01100000263482.C.c.a #18	ENSGT00530000064879.g.c #19	ENSGT00530000064879.h #19	ENSGT00520000060616 #21	ENSGT00390000016675 #22	ENSGT00940000153818.a.b.a.b #23	ENSGT00550000074863 #24	ENSGT00390000010789 #25	ENSGT00940000160675 #26	ENSGT00940000156751 #27	ENSGT00390000008122 #28	ENSGT00940000156706 #29	ENSGT00390000000288 #30	ENSGT00940000160834 #31	ENSGT00390000018761	ENSGT00840000129887	ENSGT00390000009552	ENSGT00390000013520	ENSGT00940000157382	ENSGT00390000010822
Mouse	MODERN SPECIES	2	Ap2b1 (ENSMUSG00000035152) #7	Rasl10b (ENSMUSG00000020684) #8	Gas2l2 (ENSMUSG00000020686) #9	1700020L24Rik (ENSMUSG00000035085) #10	Mmp28 (ENSMUSG00000020682) #11	Taf15 (ENSMUSG00000020680) #12	Heatr9 (ENSMUSG00000018925) #13	Ccl5 (ENSMUSG00000035042) #14	Ccl9 (ENSMUSG00000019122) ##14	Ccl6 (ENSMUSG00000018927) ##14	Ccl3 (ENSMUSG00000000982) #17	Ccl4 (ENSMUSG00000018930) #18	Wfdc17 (ENSMUSG00000069792) #19	Wfdc18 (ENSMUSG00000000983) #19	Wfdc21 (ENSMUSG00000051748) #21	Heatr6 (ENSMUSG00000000976) #22	Hnf1b (ENSMUSG00000020679) #23	Ddx52 (ENSMUSG00000020677) #24	Synrg (ENSMUSG00000034940) #25	Dusp14 (ENSMUSG00000018648) #26	Tada2a (ENSMUSG00000018651) #27	Acaca (ENSMUSG00000020532) #29	Gm11437 (ENSMUSG00000051452) #28	Aatf (ENSMUSG00000018697) #30	Lhx1 (ENSMUSG00000018698) #31	Mrm1 (ENSMUSG00000018405)	Dhrs11 (ENSMUSG00000034449)	Ggnbp2 (ENSMUSG00000020530)	Pigw (ENSMUSG00000045140)	Myo19 (ENSMUSG00000020527)	Znhit3 (ENSMUSG00000020526)
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000155206.d #7	ENSGT00940000160764 #8	ENSGT00940000162866 #9	ENSGT00390000007830 #10	ENSGT00940000159596 #11	ENSGT00940000156438 #12	ENSGT00390000007247 #13	ENSGT01100000263482.D #14	ENSGT01100000263482.C.c.b.a.b.a.m ##14	ENSGT01100000263482.C.c.b.a.b.a.n ##14	ENSGT01100000263482.C.c.b.b.a.b #17	ENSGT01100000263482.C.c.a #18	ENSGT00530000064879.g.c #19	ENSGT00530000064879.h #19	ENSGT00520000060616 #21	ENSGT00390000016675 #22	ENSGT00940000153818.a.b.a.b #23	ENSGT00550000074863 #24	ENSGT00390000010789 #25	ENSGT00940000160675 #26	ENSGT00940000156751 #27	ENSGT00390000008122 #28	ENSGT00940000156706 #29	ENSGT00390000000288 #30	ENSGT00940000160834 #31	ENSGT00390000018761	ENSGT00840000129887	ENSGT00390000009552	ENSGT00390000013520	ENSGT00940000157382	ENSGT00390000010822
Steppe mouse	MODERN SPECIES	3305	1700020L24Rik (ENSMSIG00000012643) #10	Mmp28 (ENSMSIG00000012526) #11	Taf15 (ENSMSIG00000012461) #12	Heatr9 (ENSMSIG00000012418) #13	Ccl5 (ENSMSIG00000012408) #14	Ccl9 (ENSMSIG00000012396) ##14	Ccl6 (ENSMSIG00000012387) ##14	Ccl3 (ENSMSIG00000012367) #17	Ccl4 (ENSMSIG00000012352) #18	ENSMSIG00000012344 #19	ENSMSIG00000012332	ENSMSIG00000012323 #20	Wfdc17 (ENSMSIG00000012316) #19	Wfdc18 (ENSMSIG00000012297) #19	Wfdc21 (ENSMSIG00000012277) #21	Heatr6 (ENSMSIG00000012205) #22	Hnf1b (ENSMSIG00000012071) #23	Ddx52 (ENSMSIG00000012043) #24	Synrg (ENSMSIG00000011874) #25	Dusp14 (ENSMSIG00000011867) #26	Tada2a (ENSMSIG00000011818) #27	Gm11437 (ENSMSIG00000011800) #28	Acaca (ENSMSIG00000011559) #29	Aatf (ENSMSIG00000011523) #30	Lhx1 (ENSMSIG00000011492) #31	Mrm1 (ENSMSIG00000011460)	Dhrs11 (ENSMSIG00000011441)	Ggnbp2 (ENSMSIG00000011309)	Pigw (ENSMSIG00000011294)	Myo19 (ENSMSIG00000011255)	Znhit3 (ENSMSIG00000011245)
spretus	MODERN SPECIES	2	Rasl10b (MGP_SPRETEiJ_G0017716) #8	Gas2l2 (MGP_SPRETEiJ_G0017717) #9	1700020L24Rik (MGP_SPRETEiJ_G0017718) #10	Mmp28 (MGP_SPRETEiJ_G0017719) #11	Taf15 (MGP_SPRETEiJ_G0017720) #12	Heatr9 (MGP_SPRETEiJ_G0017721) #13	Ccl5 (MGP_SPRETEiJ_G0017722) #14	Ccl9 (MGP_SPRETEiJ_G0017723) ##14	Ccl6 (MGP_SPRETEiJ_G0017724) ##14	MGP_SPRETEiJ_G0017725	Ccl3 (MGP_SPRETEiJ_G0017726) #17	Ccl4 (MGP_SPRETEiJ_G0017727) #18	Wfdc17 (MGP_SPRETEiJ_G0017728) #19	Wfdc18 (MGP_SPRETEiJ_G0017729) #19	Wfdc21 (MGP_SPRETEiJ_G0017730) #21	Heatr6 (MGP_SPRETEiJ_G0017731) #22	Hnf1b (MGP_SPRETEiJ_G0017732) #23	Ddx52 (MGP_SPRETEiJ_G0017733) #24	Synrg (MGP_SPRETEiJ_G0017734) #25	Dusp14 (MGP_SPRETEiJ_G0017735) #26	Tada2a (MGP_SPRETEiJ_G0017736) #27	Acaca (MGP_SPRETEiJ_G0017737) #29	Gm11437 (MGP_SPRETEiJ_G0017738) #28	Aatf (MGP_SPRETEiJ_G0017739) #30	Lhx1 (MGP_SPRETEiJ_G0017740) #31	Mrm1 (MGP_SPRETEiJ_G0017741)	Dhrs11 (MGP_SPRETEiJ_G0017742)	Ggnbp2 (MGP_SPRETEiJ_G0017743)	Pigw (MGP_SPRETEiJ_G0017744)	Myo19 (MGP_SPRETEiJ_G0017745)	Znhit3 (MGP_SPRETEiJ_G0017746)
Ryukyu mouse	MODERN SPECIES	2	Ap2b1 (MGP_CAROLIEiJ_G0016871) #7	Rasl10b (MGP_CAROLIEiJ_G0016872) #8	Gas2l2 (MGP_CAROLIEiJ_G0016873) #9	1700020L24Rik (MGP_CAROLIEiJ_G0016874) #10	Mmp28 (MGP_CAROLIEiJ_G0016875) #11	Taf15 (MGP_CAROLIEiJ_G0016876) #12	Heatr9 (MGP_CAROLIEiJ_G0016877) #13	Ccl5 (MGP_CAROLIEiJ_G0016878) #14	Ccl9 (MGP_CAROLIEiJ_G0016879) ##14	Ccl6 (MGP_CAROLIEiJ_G0016880) ##14	Ccl3 (MGP_CAROLIEiJ_G0016881) #17	Ccl4 (MGP_CAROLIEiJ_G0016882) #18	Wfdc17 (MGP_CAROLIEiJ_G0016883) #19	Wfdc18 (MGP_CAROLIEiJ_G0016884) #19	Wfdc21 (MGP_CAROLIEiJ_G0016885) #21	Heatr6 (MGP_CAROLIEiJ_G0016886) #22	Hnf1b (MGP_CAROLIEiJ_G0016887) #23	Ddx52 (MGP_CAROLIEiJ_G0016888) #24	Synrg (MGP_CAROLIEiJ_G0016889) #25	Dusp14 (MGP_CAROLIEiJ_G0016890) #26	Tada2a (MGP_CAROLIEiJ_G0016891) #27	Acaca (MGP_CAROLIEiJ_G0016892) #29	Gm11437 (MGP_CAROLIEiJ_G0016893) #28	Aatf (MGP_CAROLIEiJ_G0016894) #30	Lhx1 (MGP_CAROLIEiJ_G0016895) #31	Mrm1 (MGP_CAROLIEiJ_G0016896)	Dhrs11 (MGP_CAROLIEiJ_G0016897)	Ggnbp2 (MGP_CAROLIEiJ_G0016898)	Pigw (MGP_CAROLIEiJ_G0016899)	Myo19 (MGP_CAROLIEiJ_G0016900)	Znhit3 (MGP_CAROLIEiJ_G0016901)
Shrew mouse	MODERN SPECIES	5	Slfn14 (MGP_PahariEiJ_G0018000)	Pex12 (MGP_PahariEiJ_G0018001)	Ap2b1 (MGP_PahariEiJ_G0018002) #7	Rasl10b (MGP_PahariEiJ_G0018003) #8	Gas2l2 (MGP_PahariEiJ_G0018004) #9	1700020L24Rik (MGP_PahariEiJ_G0018005) #10	Mmp28 (MGP_PahariEiJ_G0018006) #11	Taf15 (MGP_PahariEiJ_G0018007) #12	Heatr9 (MGP_PahariEiJ_G0018008) #13	Ccl5 (MGP_PahariEiJ_G0018009) #14	Ccl9 (MGP_PahariEiJ_G0018010) ##14	Ccl6 (MGP_PahariEiJ_G0018011) ##14	Ccl3 (MGP_PahariEiJ_G0018012) #17	Ccl4 (MGP_PahariEiJ_G0018013) #18	Wfdc21 (MGP_PahariEiJ_G0018015) #21	Heatr6 (MGP_PahariEiJ_G0018016) #22	Hnf1b (MGP_PahariEiJ_G0018017) #23	Ddx52 (MGP_PahariEiJ_G0018018) #24	Synrg (MGP_PahariEiJ_G0018019) #25	Dusp14 (MGP_PahariEiJ_G0018020) #26	Tada2a (MGP_PahariEiJ_G0018021) #27	Acaca (MGP_PahariEiJ_G0018022) #29	Gm11437 (MGP_PahariEiJ_G0018023) #28	Aatf (MGP_PahariEiJ_G0018024) #30	Lhx1 (MGP_PahariEiJ_G0018025) #31	Mrm1 (MGP_PahariEiJ_G0018026)	Dhrs11 (MGP_PahariEiJ_G0018027)	Ggnbp2 (MGP_PahariEiJ_G0018028)	Pigw (MGP_PahariEiJ_G0018029)	Myo19 (MGP_PahariEiJ_G0018030)	Znhit3 (MGP_PahariEiJ_G0018031)
Rat	MODERN SPECIES	1	Heatr9 (ENSRNOG00000037100) #13	Ccl5 (ENSRNOG00000010906)	Ccl9 (ENSRNOG00000028548) ##14	Ccl6 (ENSRNOG00000030021) #16	Ccl3 (ENSRNOG00000011205) #17	Ccl4 (ENSRNOG00000011406) #18	ENSRNOG00000070672	LOC103695128 (ENSRNOG00000051084)	LOC100909660 (ENSRNOG00000066869) #19	ENSRNOG00000066744	Anos1 (ENSRNOG00000002497) #19	ENSRNOG00000067505	Wfdc18 (ENSRNOG00000037097) #19	AABR07030143.1 (ENSRNOG00000057390) #19	Wfdc21 (ENSRNOG00000029668) #21	Heatr6 (ENSRNOG00000002542) #22	Hnf1b (ENSRNOG00000002598) #23	Ddx52 (ENSRNOG00000002612) #24	Synrg (ENSRNOG00000053814) #25	Ac1576 (ENSRNOG00000058372)	Dusp14 (ENSRNOG00000030091) #26	Tada2a (ENSRNOG00000002757) #27	Acaca (ENSRNOG00000034013) #29	LOC102552988 (ENSRNOG00000028116) #28	Aatf (ENSRNOG00000002778) #30	Lhx1 (ENSRNOG00000002812) #31	Mrm1 (ENSRNOG00000027901)	Dhrs11 (ENSRNOG00000027891)	Ube2i (ENSRNOG00000017907)	Ggnbp2 (ENSRNOG00000027860)	Pigw (ENSRNOG00000027857)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1422	ENSNGAG00000013242	ENSNGAG00000009444 #7	Rasl10b (ENSNGAG00000002106) #8	ENSNGAG00000019453	1700020L24Rik (ENSNGAG00000019913) #10	Mmp28 (ENSNGAG00000014473) #11	ENSNGAG00000015117	Taf15 (ENSNGAG00000017633) #12	Heatr9 (ENSNGAG00000011711) #13	Ccl5 (ENSNGAG00000003622) #14	ENSNGAG00000006220 #15	Ccl3 (ENSNGAG00000003991) #17	Ccl4 (ENSNGAG00000003228) #18	ENSNGAG00000017535	Wfdc21 (ENSNGAG00000012983) #21	Heatr6 (ENSNGAG00000016534) #22	Hnf1b (ENSNGAG00000017601) #23	Ddx52 (ENSNGAG00000020686) #24	Synrg (ENSNGAG00000000321) #25	Dusp14 (ENSNGAG00000000587) #26	Tada2a (ENSNGAG00000019511) #27
Lesser Egyptian jerboa	MODERN SPECIES	112	ENSJJAG00000018288	Slfn14 (ENSJJAG00000016028)	ENSJJAG00000008010	Ap2b1 (ENSJJAG00000023688) #7	Rasl10b (ENSJJAG00000011469) #8	ENSJJAG00000020015	1700020L24Rik (ENSJJAG00000011369) #10	Mmp28 (ENSJJAG00000009319) #11	Taf15 (ENSJJAG00000010606) #12	Heatr9 (ENSJJAG00000012557) #13	Ccl5 (ENSJJAG00000024069) #14	Ccl3 (ENSJJAG00000022032) #17	Ccl4 (ENSJJAG00000011404) #18	ENSJJAG00000023138	Wfdc21 (ENSJJAG00000014661) #21	Heatr6 (ENSJJAG00000012154) #22	Hnf1b (ENSJJAG00000011207) #23	Ddx52 (ENSJJAG00000021877) #24	Synrg (ENSJJAG00000021827) #25	Dusp14 (ENSJJAG00000010198) #26	Tada2a (ENSJJAG00000014360) #27	ENSJJAG00000010620	Gm11437 (ENSJJAG00000004019) #28	Acaca (ENSJJAG00000016405) #29	Aatf (ENSJJAG00000000330) #30	Lhx1 (ENSJJAG00000024155) #31	Mrm1 (ENSJJAG00000010068)	Dhrs11 (ENSJJAG00000006482)	Ggnbp2 (ENSJJAG00000020699)	Myo19 (ENSJJAG00000018388)	Znhit3 (ENSJJAG00000021789)
Kangaroo rat	MODERN SPECIES	338	Fndc8 (ENSDORG00000000843)	Nle1 (ENSDORG00000000845)	Unc45b (ENSDORG00000000847)	ENSDORG00000023333	Pex12 (ENSDORG00000026935)	Ap2b1 (ENSDORG00000003803) #7	Rasl10b (ENSDORG00000003805) #8	ENSDORG00000026155	1700020L24Rik (ENSDORG00000003808) #10	Mmp28 (ENSDORG00000003809) #11	Taf15 (ENSDORG00000014619) #12	ENSDORG00000003141 #13	Ccl5 (ENSDORG00000007688) #14	Ccl4 (ENSDORG00000026295) #18	Wfdc21 (ENSDORG00000024216) #21	Heatr6 (ENSDORG00000011214) #22	Hnf1b (ENSDORG00000009669) #23	Ddx52 (ENSDORG00000004276) #24	Synrg (ENSDORG00000004275) #25	Dusp14 (ENSDORG00000025341) #26	Tada2a (ENSDORG00000009547) #27	Acaca (ENSDORG00000006958) #29	ENSDORG00000006957	Lhx1 (ENSDORG00000006956) #31	Mrm1 (ENSDORG00000013267)	Dhrs11 (ENSDORG00000013266)	Ggnbp2 (ENSDORG00000013265)	Myo19 (ENSDORG00000012276)	Znhit3 (ENSDORG00000029572)	Car4 (ENSDORG00000007143)	Usp32 (ENSDORG00000016159)
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00410000025651.A.b.b	ENSGT00390000016209	ENSGT00940000155206.d #7	ENSGT00940000160764 #8	ENSGT00940000162866 #9	ENSGT01060000250264	ENSGT00940000154849.a	ENSGT00390000007830 #10	ENSGT00940000159596 #11	ENSGT00940000156438 #12	ENSGT00390000007247 #13	ENSGT01100000263482.D #14	ENSGT00940000165476 #15	ENSGT00960000187851	ENSGT00520000060616 #21	ENSGT00390000016675 #22	ENSGT00940000153818.a.b.a.b #23	ENSGT00550000074863 #24	ENSGT00390000010789 #25	ENSGT00940000160675 #26	ENSGT00940000156751 #27	ENSGT00390000008122 #28	ENSGT00940000156706 #29	ENSGT00390000000288 #30	ENSGT00940000160834 #31	ENSGT00390000018761	ENSGT00840000129887	ENSGT00390000009552	ENSGT00390000013520	ENSGT00940000157382	ENSGT00390000010822
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00940000154849.a	ENSGT00390000007830 #10	ENSGT00940000159596 #11	ENSGT00940000156438 #12	ENSGT00390000007247 #13	ENSGT01100000263482.D #14	ENSGT01100000263482.B ##14	ENSGT01100000263482.C.c.b.a.b.b ##14	ENSGT01100000263482.C.c.b.a.b.a ##14	ENSGT00940000165476 #15	ENSGT01100000263482.C.c.b.b.a.b #17	ENSGT01100000263482.C.c.a #18	ENSGT00940000166945	ENSGT00960000187851	ENSGT00520000060616 #21	ENSGT00390000016675 #22	ENSGT00940000153818.a.b.a.b #23	ENSGT00550000074863 #24	ENSGT00390000010789 #25	ENSGT00940000160675 #26	ENSGT00940000156751 #27	ENSGT00390000008122 #28	ENSGT00940000156706 #29	ENSGT00390000000288 #30	ENSGT00940000160834 #31	ENSGT00390000018761	ENSGT00840000129887	ENSGT00390000009552	ENSGT00390000013520	ENSGT00940000157382	ENSGT00390000010822
Marmotini	ANCESTRAL SPECIES	8	ENSGT00940000160764 #8	ENSGT01060000250264	ENSGT00940000154849.a	ENSGT00390000007830 #10	ENSGT00940000159596 #11	ENSGT00940000156438 #12	ENSGT00390000007247 #13	ENSGT01100000263482.D #14	ENSGT01100000263482.B ##14	ENSGT01100000263482.C.c.b.a.b.b ##14	ENSGT01100000263482.C.c.b.a.b.a ##14	ENSGT00390000010003.ab	ENSGT01100000263482.C.c.b.b.a.b #17	ENSGT01100000263482.C.c.a #18	ENSGT00520000060616 #21	ENSGT00390000016675 #22	ENSGT00940000153818.a.b.a.b #23	ENSGT00550000074863 #24	ENSGT00390000010789 #25	ENSGT00940000160675 #26	ENSGT00940000156751 #27	ENSGT00390000008122 #28	ENSGT00940000156706 #29	ENSGT00390000000288 #30	ENSGT00940000160834 #31	ENSGT00390000018761	ENSGT00840000129887	ENSGT00390000009552	ENSGT00390000013520	ENSGT00940000157382	ENSGT00390000010822
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00940000160764 #8	ENSGT01060000250264	ENSGT00940000154849.a	ENSGT00390000007830 #10	ENSGT00940000159596 #11	ENSGT00940000156438 #12	ENSGT00390000007247 #13	ENSGT01100000263482.D #14	ENSGT01100000263482.B ##14	ENSGT01100000263482.C.c.b.a.b.b ##14	ENSGT01100000263482.C.c.b.a.b.a ##14	ENSGT00390000010003.ab	ENSGT01100000263482.C.c.b.b.a.b #17	ENSGT01100000263482.C.c.a #18	ENSGT00520000060616 #21	ENSGT00390000016675 #22	ENSGT00940000153818.a.b.a.b #23	ENSGT00550000074863 #24	ENSGT00390000010789 #25	ENSGT00940000160675 #26	ENSGT00940000156751 #27	ENSGT00390000008122 #28	ENSGT00940000156706 #29	ENSGT00390000000288 #30	ENSGT00940000160834 #31	ENSGT00390000018761	ENSGT00840000129887	ENSGT00390000009552	ENSGT00390000013520	ENSGT00940000157382	ENSGT00390000010822
Arctic ground squirrel	MODERN SPECIES	193															ENSUPAG00010012127 #21	HEATR6 (ENSUPAG00010012102) #22	HNF1B (ENSUPAG00010012073) #23	DDX52 (ENSUPAG00010012034) #24	SYNRG (ENSUPAG00010011623) #25	DUSP14 (ENSUPAG00010011617) #26	TADA2A (ENSUPAG00010011582) #27	C17orf78 (ENSUPAG00010011568) #28	ACACA (ENSUPAG00010011440) #29	AATF (ENSUPAG00010011404) #30	LHX1 (ENSUPAG00010011394) #31	MRM1 (ENSUPAG00010011380)	DHRS11 (ENSUPAG00010011375)	GGNBP2 (ENSUPAG00010011289)	MYO19 (ENSUPAG00010011260)	ENSUPAG00010011238	CA4 (ENSUPAG00010011234)
Squirrel	MODERN SPECIES	90	AP2B1 (ENSSTOG00000002031) #7	RASL10B (ENSSTOG00000021097) #8	ENSSTOG00000032802	C17orf50 (ENSSTOG00000029437) #10	MMP28 (ENSSTOG00000020743) #11	TAF15 (ENSSTOG00000002081) #12	HEATR9 (ENSSTOG00000028751) #13	ENSSTOG00000015833 #14	CCL14 (ENSSTOG00000033490) ##14	ENSSTOG00000034887 ##14	ENSSTOG00000027899 #17	ENSSTOG00000031610	ENSSTOG00000027458 #17	ENSSTOG00000013313 #18	ENSSTOG00000032858 #21	HEATR6 (ENSSTOG00000026901) #22	HNF1B (ENSSTOG00000012440) #23	DDX52 (ENSSTOG00000002550) #24	SYNRG (ENSSTOG00000002530) #25	DUSP14 (ENSSTOG00000002528) #26	TADA2A (ENSSTOG00000002518) #27	ACACA (ENSSTOG00000002468) #29	C17orf78 (ENSSTOG00000002508) #28	AATF (ENSSTOG00000002458) #30	LHX1 (ENSSTOG00000022593) #31	MRM1 (ENSSTOG00000002422)	DHRS11 (ENSSTOG00000002410)	GGNBP2 (ENSSTOG00000002398)	PIGW (ENSSTOG00000034045)	MYO19 (ENSSTOG00000013563)	ZNHIT3 (ENSSTOG00000013559)
Alpin marmot	MODERN SPECIES	42	ENSMMMG00000019031 #14	CCL16 (ENSMMMG00000019034) ##14	CCL14 (ENSMMMG00000019039) ##14	ENSMMMG00000019047 ##14	ENSMMMG00000019053	ENSMMMG00000019056	ENSMMMG00000019060 #17	ENSMMMG00000019088	ENSMMMG00000019090 #17	ENSMMMG00000019093 #17	ENSMMMG00000019105 #17	ENSMMMG00000019116	ENSMMMG00000019119 #18	ENSMMMG00000019125	ENSMMMG00000019129	HEATR6 (ENSMMMG00000019131) #22	HNF1B (ENSMMMG00000019142) #23	ENSMMMG00000019173	ENSMMMG00000019174	DDX52 (ENSMMMG00000019175) #24	SYNRG (ENSMMMG00000019201) #25	DUSP14 (ENSMMMG00000019458) #26	TADA2A (ENSMMMG00000019464) #27	C17orf78 (ENSMMMG00000019471) #28	ACACA (ENSMMMG00000019480) #29	ENSMMMG00000019558	LHX1 (ENSMMMG00000019565) #31	MRM1 (ENSMMMG00000019574)	DHRS11 (ENSMMMG00000019586)	GGNBP2 (ENSMMMG00000019594)	PIGW (ENSMMMG00000019680)
Eurasian red squirrel	MODERN SPECIES	12	GAS2L2 (ENSSVLG00005010308) #9	C17orf50 (ENSSVLG00005010248) #10	MMP28 (ENSSVLG00005010157) #11	TAF15 (ENSSVLG00005010110) #12	HEATR9 (ENSSVLG00005009904) #13	ENSSVLG00005009862 #14	CCL16 (ENSSVLG00005009830) ##14	CCL14 (ENSSVLG00005009782) ##14	ENSSVLG00005009747 ##14	ENSSVLG00005009720 #15	ENSSVLG00005009611 #17	ENSSVLG00005009573 #17	ENSSVLG00005009477 #18	ENSSVLG00005009438	ENSSVLG00005009414 #21	HEATR6 (ENSSVLG00005009203) #22	HNF1B (ENSSVLG00005008984) #23	DDX52 (ENSSVLG00005008941) #24	SYNRG (ENSSVLG00005008671) #25	ENSSVLG00005008610	TADA2A (ENSSVLG00005008528) #27	ENSSVLG00005008508	ENSSVLG00005008470 #28	ACACA (ENSSVLG00005008078) #29	AATF (ENSSVLG00005008003) #30	LHX1 (ENSSVLG00005007965) #31	MRM1 (ENSSVLG00005007932)	DHRS11 (ENSSVLG00005007894)	GGNBP2 (ENSSVLG00005007850)	PIGW (ENSSVLG00005007830)	ENSSVLG00005007764
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00940000154849.a	ENSGT00390000007830 #10	ENSGT00940000159596 #11	ENSGT00940000156438 #12	ENSGT00390000007247 #13	ENSGT01100000263482.D #14	ENSGT01100000263482.B ##14	ENSGT01100000263482.C.c.b.a.b.b ##14	ENSGT01100000263482.C.c.b.a.b.a ##14	ENSGT01100000263482.C.c.b.a.a ##14	ENSGT01100000263482.C.c.b.b.a.b #17	ENSGT01100000263482.C.c.b.b.b ##14	ENSGT01100000263482.C.c.a #18	ENSGT00940000166945	ENSGT00520000060616 #21	ENSGT00390000016675 #22	ENSGT00940000153818.a.b.a.b #23	ENSGT00550000074863 #24	ENSGT00390000010789 #25	ENSGT00940000160675 #26	ENSGT00940000156751 #27	ENSGT00390000008122 #28	ENSGT00940000156706 #29	ENSGT00390000000288 #30	ENSGT00940000160834 #31	ENSGT00390000018761	ENSGT00840000129887	ENSGT00390000009552	ENSGT00390000013520	ENSGT00940000157382	ENSGT00390000010822
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00390000016209	ENSGT00940000155206.d #7	ENSGT00940000160764 #8	ENSGT00940000154849.a	ENSGT00940000162866 #9	ENSGT00390000007830 #10	ENSGT00940000159596 #11	ENSGT00940000156438 #12	ENSGT00390000007247 #13	ENSGT01100000263482.D #14	ENSGT00940000165476 #15	ENSGT01100000263482.C.c.b.b.b ##14	ENSGT01100000263482.C.c.a #18	ENSGT00940000166945	ENSGT00520000060616 #21	ENSGT00390000016675 #22	ENSGT00940000153818.a.b.a.b #23	ENSGT00550000074863 #24	ENSGT00390000010789 #25	ENSGT00940000160675 #26	ENSGT00940000156751 #27	ENSGT00390000008122 #28	ENSGT00940000156706 #29	ENSGT00390000000288 #30	ENSGT00940000160834 #31	ENSGT00390000018761	ENSGT00840000129887	ENSGT00390000009552	ENSGT00390000013520	ENSGT00940000157382	ENSGT00390000010822
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00940000155206.d #7	ENSGT00940000160764 #8	ENSGT00940000162866 #9	ENSGT00390000007830 #10	ENSGT00940000159596 #11	ENSGT00940000156438 #12	ENSGT00390000007247 #13	ENSGT01100000263482.D #14	ENSGT00940000165476 #15	ENSGT01100000263482.C.c.b.a.b.a ##14	ENSGT01100000263482.C.c.b.a.a ##14	ENSGT01100000263482.C.c.b.b.b ##14	ENSGT01100000263482.C.c.a #18	ENSGT00940000166945	ENSGT00520000060616 #21	ENSGT00390000016675 #22	ENSGT00940000153818.a.b.a.b #23	ENSGT00550000074863 #24	ENSGT00390000010789 #25	ENSGT00940000160675 #26	ENSGT00940000156751 #27	ENSGT00390000008122 #28	ENSGT00940000156706 #29	ENSGT00390000000288 #30	ENSGT00940000160834 #31	ENSGT00390000018761	ENSGT00840000129887	ENSGT00390000009552	ENSGT00390000013520	ENSGT00940000157382	ENSGT00390000010822
Long-tailed chinchilla	MODERN SPECIES	158											ENSCLAG00000014501 ##14	ENSCLAG00000012634 #18	ENSCLAG00000016754	ENSCLAG00000011924	ENSCLAG00000012435 #21	HEATR6 (ENSCLAG00000010390) #22	HNF1B (ENSCLAG00000016506) #23	DDX52 (ENSCLAG00000016292) #24	SYNRG (ENSCLAG00000013031) #25	DUSP14 (ENSCLAG00000012666) #26	TADA2A (ENSCLAG00000016976) #27	ACACA (ENSCLAG00000015071) #29	C17orf78 (ENSCLAG00000013611) #28	AATF (ENSCLAG00000014631) #30	LHX1 (ENSCLAG00000014662) #31	MRM1 (ENSCLAG00000010960)	DHRS11 (ENSCLAG00000012667)	GGNBP2 (ENSCLAG00000015068)	PIGW (ENSCLAG00000010868)	MYO19 (ENSCLAG00000011498)	ZNHIT3 (ENSCLAG00000013180)
Degu	MODERN SPECIES	205	SLFN14 (ENSODEG00000012242)	ENSODEG00000013257	AP2B1 (ENSODEG00000013913) #7	RASL10B (ENSODEG00000012407) #8	ENSODEG00000012204	C17orf50 (ENSODEG00000012668) #10	MMP28 (ENSODEG00000016303) #11	ENSODEG00000012915 #12	HEATR9 (ENSODEG00000012621) #13	ENSODEG00000012792 #14	ENSODEG00000013298	ENSODEG00000013395 #18	ENSODEG00000013198 ##14	ENSODEG00000013480 #18	ENSODEG00000013109	HEATR6 (ENSODEG00000013428) #22	HNF1B (ENSODEG00000012709) #23	ENSODEG00000012382	ENSODEG00000012814 #24	SYNRG (ENSODEG00000013858) #25	DUSP14 (ENSODEG00000020057) #26	TADA2A (ENSODEG00000014579) #27	ACACA (ENSODEG00000014030) #29	ENSODEG00000013269	AATF (ENSODEG00000013074) #30	LHX1 (ENSODEG00000012895) #31	ENSODEG00000013680	ENSODEG00000012953	ENSODEG00000013042	ENSODEG00000012529	GGNBP2 (ENSODEG00000012950)
Guinea pig	MODERN SPECIES	32	RASL10B (ENSCPOG00000031497) #8	ENSCPOG00000036328	C17orf50 (ENSCPOG00000019600) #10	MMP28 (ENSCPOG00000031764) #11	ENSCPOG00000040326 #12	HEATR9 (ENSCPOG00000010117) #13	ENSCPOG00000008852 #14	CCL14 (ENSCPOG00000035450) ##14	ENSCPOG00000039417 ##14	ENSCPOG00000026400 #17	ENSCPOG00000037138 ##14	ENSCPOG00000033663 ##14	ENSCPOG00000032867 #18	ENSCPOG00000035230	ENSCPOG00000036860 #21	HEATR6 (ENSCPOG00000015165) #22	HNF1B (ENSCPOG00000001234) #23	DDX52 (ENSCPOG00000001232) #24	SYNRG (ENSCPOG00000004643) #25	DUSP14 (ENSCPOG00000032995) #26	TADA2A (ENSCPOG00000001869) #27	ACACA (ENSCPOG00000006043) #29	AATF (ENSCPOG00000006037) #30	LHX1 (ENSCPOG00000027154) #31	MRM1 (ENSCPOG00000004283)	DHRS11 (ENSCPOG00000036629)	GGNBP2 (ENSCPOG00000004278)	PIGW (ENSCPOG00000004275)	MYO19 (ENSCPOG00000004270)	ZNHIT3 (ENSCPOG00000031447)	CA4 (ENSCPOG00000026479)
Lagomorpha	ANCESTRAL SPECIES		ENSGT00390000016209	ENSGT00940000155206.d #7	ENSGT00940000160764 #8	ENSGT00940000162866 #9	ENSGT00390000007830 #10	ENSGT00940000159596 #11	ENSGT00940000156438 #12	ENSGT00390000007247 #13	ENSGT01100000263482.D #14	ENSGT01100000263482.B ##14	ENSGT01100000263482.C.c.b.a.b.b ##14	ENSGT00940000165476.b #15	ENSGT01100000263482.C.c.b.b.a.b #17	ENSGT00940000165089	ENSGT00520000060616 #21	ENSGT00390000016675 #22	ENSGT00940000153818.a.b.a.b #23	ENSGT00550000074863 #24	ENSGT00390000010789 #25	ENSGT00940000160675 #26	ENSGT00940000156751 #27	ENSGT00940000156706 #29	ENSGT00390000000288 #30	ENSGT00940000160834 #31	ENSGT00390000018761	ENSGT00840000129887	ENSGT00390000009552	ENSGT00390000013520	ENSGT00940000157382	ENSGT00390000010822	ENSGT00940000155690
Rabbit	MODERN SPECIES	10	SLFN14 (ENSOCUG00000006884)	PEX12 (ENSOCUG00000004058)	AP2B1 (ENSOCUG00000004060) #7	RASL10B (ENSOCUG00000004080) #8	GAS2L2 (ENSOCUG00000004081) #9	C17orf50 (ENSOCUG00000004084) #10	MMP28 (ENSOCUG00000004089) #11	TAF15 (ENSOCUG00000002838) #12	HEATR9 (ENSOCUG00000002842) #13	ENSOCUG00000002848 #14	CCL14 (ENSOCUG00000002849) ##14	ENSOCUG00000000686 #15	ENSOCUG00000000771 #17	ENSOCUG00000026206	ENSOCUG00000036945 #21	HEATR6 (ENSOCUG00000003690) #22	HNF1B (ENSOCUG00000003682) #23	DDX52 (ENSOCUG00000014532) #24	SYNRG (ENSOCUG00000014519) #25	DUSP14 (ENSOCUG00000009880) #26	TADA2A (ENSOCUG00000014504) #27	ACACA (ENSOCUG00000014453) #29	AATF (ENSOCUG00000014434) #30	LHX1 (ENSOCUG00000024664) #31	MRM1 (ENSOCUG00000012149)	DHRS11 (ENSOCUG00000021228)	GGNBP2 (ENSOCUG00000000925)	PIGW (ENSOCUG00000000924)	MYO19 (ENSOCUG00000000921)	ENSOCUG00000000920	ENSOCUG00000009399
Pika	MODERN SPECIES	122																ENSOPRG00000006289 #22
Tree shrew	MODERN SPECIES	3442																HEATR6 (ENSTBEG00000002422) #22