Mus	ANCESTRAL SPECIES	18	ENSGT00530000063576.B	ENSGT00390000005801	ENSGT00390000012916.t	ENSGT00940000162284.e.b.a	ENSGT01100000263494.a.a.a.a.b.b #7	ENSGT01050000244828.c.b.b.b.c.b #8	ENSGT00940000156081 #10	ENSGT00940000157345.a #11	ENSGT00950000183043.a.b.b.a.b.u.a.a #12	ENSGT00950000183043.a.b.b.a.a.a.a.a.a #14	ENSGT00940000160228 #16	ENSGT00530000069333.a #19	ENSGT00940000159128 #20	ENSGT00940000153321.b.b.l.a #21	ENSGT00940000154367.a	ENSGT00510000048363 #22	ENSGT00940000155950 #24	ENSGT00520000055591.b #25	ENSGT00670000098074 #26	ENSGT00940000160237 #27	ENSGT00940000160266 #28	ENSGT00940000161328 #30	ENSGT00940000159011 #31	ENSGT00390000016390	ENSGT00940000155211	ENSGT00390000015513.a.a.a	ENSGT00390000015513.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.b.b ##21	ENSGT00940000153321.b.b.l.b.b.a.b.a ##21	ENSGT00940000153321.b.b.l.b.b.a.a.b.b ##21	ENSGT00940000153321.b.b.l.b.b.a.a.a ##21
Mus_A	ANCESTRAL SPECIES	14	ENSGT00940000155274.a.b.c.b	ENSGT00530000063576.B	ENSGT00390000005801	ENSGT00390000012916.t	ENSGT00940000162284.e.b.a	ENSGT01100000263494.a.a.a.a.b.b #7	ENSGT01050000244828.c.b.b.b.c.b #8	ENSGT00940000156081 #10	ENSGT00940000157345.a #11	ENSGT00950000183043.a.b.b.a.b.u.a.a #12	ENSGT00950000183043.a.b.b.a.a.a.a.a.a #14	ENSGT00940000160228 #16	ENSGT00530000069333.a #19	ENSGT00940000159128 #20	ENSGT00940000153321.b.b.l.a #21	ENSGT00510000048363 #22	ENSGT00940000155950 #24	ENSGT00520000055591.b #25	ENSGT00670000098074 #26	ENSGT00940000160237 #27	ENSGT00940000160266 #28	ENSGT00940000161328 #30	ENSGT00940000159011 #31	ENSGT00390000016390	ENSGT00940000155211	ENSGT00390000015513.a.a.a	ENSGT00390000015513.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.b.b ##21	ENSGT00940000153321.b.b.l.b.b.a.b.a ##21	ENSGT00940000153321.b.b.l.b.b.a.a.b.b ##21	ENSGT00940000153321.b.b.l.b.b.a.a.a ##21
Mus_B	ANCESTRAL SPECIES	13	ENSGT00390000011190.y.a	ENSGT00390000012916.t	ENSGT00940000162111.d	ENSGT00860000136162	ENSGT00940000162284.e.b.a	ENSGT01100000263494.a.a.a.a.b.b #7	ENSGT01050000244828.c.b.b.b.c.b #8	ENSGT00940000156081 #10	ENSGT00940000157345.a #11	ENSGT00950000183043.a.b.b.a.b.u.a.a #12	ENSGT00950000183043.a.b.b.a.a.a.a.a.a #14	ENSGT00940000160228 #16	ENSGT00530000069333.a #19	ENSGT00940000159128 #20	ENSGT00940000153321.b.b.l.a #21	ENSGT00510000048363 #22	ENSGT00940000155950 #24	ENSGT00520000055591.b #25	ENSGT00670000098074 #26	ENSGT00940000160237 #27	ENSGT00940000160266 #28	ENSGT00940000161328 #30	ENSGT00940000159011 #31	ENSGT00390000016390	ENSGT00940000155211	ENSGT00390000015513.a.a.a	ENSGT00390000015513.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.b.b ##21	ENSGT00940000153321.b.b.l.b.b.a.b.a ##21	ENSGT00940000153321.b.b.l.b.b.a.a.b.b ##21	ENSGT00940000153321.b.b.l.b.b.a.a.a ##21
Mus_C	ANCESTRAL SPECIES	10	ENSGT00390000011190.y.a	ENSGT00390000012916.t	ENSGT00940000162111.d	ENSGT00860000136162	ENSGT00940000162284.e.b.a	ENSGT01100000263494.a.a.a.a.b.b #7	ENSGT01050000244828.c.b.b.b.c.b #8	ENSGT00940000156081 #10	ENSGT00940000157345.a #11	ENSGT00950000183043.a.b.b.a.b.u.a.a #12	ENSGT00950000183043.a.b.b.a.a.a.a.a.a #14	ENSGT00940000160228 #16	ENSGT00530000069333.a #19	ENSGT00940000159128 #20	ENSGT00940000153321.b.b.l.a #21	ENSGT00510000048363 #22	ENSGT00940000155950 #24	ENSGT00520000055591.b #25	ENSGT00670000098074 #26	ENSGT00940000160237 #27	ENSGT00940000160266 #28	ENSGT00940000161328 #30	ENSGT00940000159011 #31	ENSGT00390000016390	ENSGT00940000155211	ENSGT00390000015513.a.a.a	ENSGT00390000015513.a.a.b	ENSGT00940000153321.b.b.l.b.b.a.b.b ##21	ENSGT00940000153321.b.b.l.b.b.a.b.a ##21	ENSGT00940000153321.b.b.l.b.b.a.a.b.b ##21	ENSGT00940000153321.b.b.l.b.b.a.a.a ##21
Steppe mouse	MODERN SPECIES	3039	Or9s18 (ENSMSIG00000021783) #7	Or14p1 (ENSMSIG00000021778) #8	ENSMSIG00000021775 #9	Mfsd14b (ENSMSIG00000021759) #10	ENSMSIG00000021748 #11	Spata31d1c (ENSMSIG00000021735) #12	ENSMSIG00000021729 #13	Spata31 (ENSMSIG00000021723) #14	ENSMSIG00000021707 #15	Cntnap3 (ENSMSIG00000021683) #16	ENSMSIG00000021657 #17	ENSMSIG00000021654 #18	Fam240b (ENSMSIG00000021651) #19	Cdk20 (ENSMSIG00000021605) #20	Ctsl (ENSMSIG00000021593) #21	Prxl2c (ENSMSIG00000021569) #22	ENSMSIG00000021554 #23	Cdc14b (ENSMSIG00000021401) #24	Habp4 (ENSMSIG00000021366) #25	Zfp367 (ENSMSIG00000021336) #26	Slc35d2 (ENSMSIG00000021264) #27	Hsd17b3 (ENSMSIG00000021249) #28	ENSMSIG00000021243 #29	Ercc6l2 (ENSMSIG00000021038) #30	Ptch1 (ENSMSIG00000020849) #31
spretus	MODERN SPECIES	4	Mterf3 (MGP_SPRETEiJ_G0019536)	Gm10767 (MGP_SPRETEiJ_G0019535)	Uqcrb (MGP_SPRETEiJ_G0019534)	MGP_SPRETEiJ_G0019533	Gm10775 (MGP_SPRETEiJ_G0019532)	Or9s18 (MGP_SPRETEiJ_G0019531) #7	Or14p1 (MGP_SPRETEiJ_G0019530) #8	Mfsd14b (MGP_SPRETEiJ_G0019529) #10	Prss47 (MGP_SPRETEiJ_G0019528) #11	Spata31d1c (MGP_SPRETEiJ_G0019527) #12	Spata31 (MGP_SPRETEiJ_G0019526) #14	Cntnap3 (MGP_SPRETEiJ_G0019525) #16	Fam240b (MGP_SPRETEiJ_G0019524) #19	Cdk20 (MGP_SPRETEiJ_G0019523) #20	Ctsl (MGP_SPRETEiJ_G0019522) #21	Prxl2c (MGP_SPRETEiJ_G0019521) #22	Cdc14b (MGP_SPRETEiJ_G0019520) #24	Habp4 (MGP_SPRETEiJ_G0019519) #25	Zfp367 (MGP_SPRETEiJ_G0019518) #26	Slc35d2 (MGP_SPRETEiJ_G0019517) #27	Hsd17b3 (MGP_SPRETEiJ_G0019516) #28	MGP_SPRETEiJ_G0019515 #30	Ptch1 (MGP_SPRETEiJ_G0019514) #31	Fancc (MGP_SPRETEiJ_G0019513)	Aopep (MGP_SPRETEiJ_G0019512)	Fbp1 (MGP_SPRETEiJ_G0019511)	Fbp2 (MGP_SPRETEiJ_G0019510)	MGP_SPRETEiJ_G0019509 ##21	Ctsm (MGP_SPRETEiJ_G0019508) ##21	Cts7 (MGP_SPRETEiJ_G0019507) ##21	Cts8 (MGP_SPRETEiJ_G0019506) ##21
Mouse	MODERN SPECIES	4	Zfp997 (ENSMUSG00000095909)	Gm10139 (ENSMUSG00000063905)	Zfp369 (ENSMUSG00000021514)	Gm10775 (ENSMUSG00000074847)	Nlrp4f (ENSMUSG00000032999)	Or9s18 (ENSMUSG00000049806) #7	Or14p1 (ENSMUSG00000108426) #8	Mfsd14b (ENSMUSG00000038212) #10	Prss47 (ENSMUSG00000090658) #11	Spata31d1c (ENSMUSG00000074849) #12	Spata31 (ENSMUSG00000056223) #14	Cntnap3 (ENSMUSG00000033063) #16	Fam240b (ENSMUSG00000096537) #19	Cdk20 (ENSMUSG00000021483) #20	Ctsl (ENSMUSG00000021477) #21	Prxl2c (ENSMUSG00000021482) #22	Cdc14b (ENSMUSG00000033102) #24	Habp4 (ENSMUSG00000021476) #25	Zfp367 (ENSMUSG00000044934) #26	Slc35d2 (ENSMUSG00000033114) #27	Hsd17b3 (ENSMUSG00000033122) #28	Ercc6l2 (ENSMUSG00000021470) #30	Ptch1 (ENSMUSG00000021466) #31	Fancc (ENSMUSG00000021461)	Aopep (ENSMUSG00000021458)	Fbp1 (ENSMUSG00000069805)	Fbp2 (ENSMUSG00000021456)	Gm5141 (ENSMUSG00000091183)	Platr25 (ENSMUSG00000074863)	6720489N17Rik (ENSMUSG00000072066)	Zfp934 (ENSMUSG00000074865)
Ryukyu mouse	MODERN SPECIES	4	Zfp712 (MGP_CAROLIEiJ_G0018656)	Ptdss1 (MGP_CAROLIEiJ_G0018655)	Mterf3 (MGP_CAROLIEiJ_G0018654)	Uqcrb (MGP_CAROLIEiJ_G0018653)	Nlrp4f (MGP_CAROLIEiJ_G0018652)	Or9s18 (MGP_CAROLIEiJ_G0018651) #7	Or14p1 (MGP_CAROLIEiJ_G0018650) #8	Mfsd14b (MGP_CAROLIEiJ_G0018649) #10	Prss47 (MGP_CAROLIEiJ_G0018648) #11	Spata31d1c (MGP_CAROLIEiJ_G0018647) #12	Spata31 (MGP_CAROLIEiJ_G0018646) #14	Cntnap3 (MGP_CAROLIEiJ_G0018645) #16	Fam240b (MGP_CAROLIEiJ_G0018644) #19	Cdk20 (MGP_CAROLIEiJ_G0018643) #20	Ctsl (MGP_CAROLIEiJ_G0018642) #21	Prxl2c (MGP_CAROLIEiJ_G0018641) #22	Cdc14b (MGP_CAROLIEiJ_G0018640) #24	Habp4 (MGP_CAROLIEiJ_G0018639) #25	Zfp367 (MGP_CAROLIEiJ_G0018638) #26	Slc35d2 (MGP_CAROLIEiJ_G0018637) #27	Hsd17b3 (MGP_CAROLIEiJ_G0018636) #28	MGP_CAROLIEiJ_G0018635 #30	Ptch1 (MGP_CAROLIEiJ_G0018634) #31	Fancc (MGP_CAROLIEiJ_G0018633)	Aopep (MGP_CAROLIEiJ_G0018632)	Fbp1 (MGP_CAROLIEiJ_G0018631)	Fbp2 (MGP_CAROLIEiJ_G0018630)	MGP_CAROLIEiJ_G0018629 ##21	Ctsm (MGP_CAROLIEiJ_G0018628) ##21	Cts7 (MGP_CAROLIEiJ_G0018627) ##21	Cts8 (MGP_CAROLIEiJ_G0018626) ##21
Shrew mouse	MODERN SPECIES	7	Ptdss1 (MGP_PahariEiJ_G0019720)	Mterf3 (MGP_PahariEiJ_G0019719)	Uqcrb (MGP_PahariEiJ_G0019718)	MGP_PahariEiJ_G0019717	Nlrp4f (MGP_PahariEiJ_G0019716)	Or9s18 (MGP_PahariEiJ_G0019715) #7	Or14p1 (MGP_PahariEiJ_G0019714) #8	Mfsd14b (MGP_PahariEiJ_G0019713) #10	Prss47 (MGP_PahariEiJ_G0019712) #11	Spata31d1c (MGP_PahariEiJ_G0019711) #12	Spata31 (MGP_PahariEiJ_G0019710) #14	Cntnap3 (MGP_PahariEiJ_G0019709) #16	Fam240b (MGP_PahariEiJ_G0019708) #19	Cdk20 (MGP_PahariEiJ_G0019707) #20	MGP_PahariEiJ_G0019706	Prxl2c (MGP_PahariEiJ_G0019705) #22	Cdc14b (MGP_PahariEiJ_G0019704) #24	Habp4 (MGP_PahariEiJ_G0019703) #25	Zfp367 (MGP_PahariEiJ_G0019702) #26	Slc35d2 (MGP_PahariEiJ_G0019701) #27	Hsd17b3 (MGP_PahariEiJ_G0019700) #28	MGP_PahariEiJ_G0019699 #30	Ptch1 (MGP_PahariEiJ_G0019698) #31	Fancc (MGP_PahariEiJ_G0019697)	Aopep (MGP_PahariEiJ_G0019696)	Fbp1 (MGP_PahariEiJ_G0019695)	Fbp2 (MGP_PahariEiJ_G0019694)	MGP_PahariEiJ_G0019693 ##21	MGP_PahariEiJ_G0019692 ##21	Cts7 (MGP_PahariEiJ_G0019691) ##21	Cts8 (MGP_PahariEiJ_G0019690) ##21