Mus_A	ANCESTRAL SPECIES	14	ENSGT00940000155274.a.b.c.b	ENSGT00530000063576.B	ENSGT00390000005801	ENSGT00390000012916.t	ENSGT00940000162284.e.b.a #11	ENSGT01100000263494.a.a.a.a.b.b #12	ENSGT01050000244828.c.b.b.b.c.b #13	ENSGT00940000156081 #14	ENSGT00940000157345.a #15	ENSGT00950000183043.a.b.b.a.b.u.a.a #16	ENSGT00950000183043.a.b.b.a.a.a.a.a.a #17	ENSGT00940000160228 #18	ENSGT00530000069333.a #19	ENSGT00940000159128 #20	ENSGT00940000153321.b.b.l.a #21	ENSGT00510000048363 #22	ENSGT00940000155950 #23	ENSGT00520000055591.b #24	ENSGT00670000098074 #25	ENSGT00940000160237 #26	ENSGT00940000160266 #27	ENSGT00940000161328 #28	ENSGT00940000159011 #29	ENSGT00390000016390 #30	ENSGT00940000155211 #31	ENSGT00390000015513.a.a.a #32	ENSGT00390000015513.a.a.b #33	ENSGT00940000153321.b.b.l.b.b.a.b.b ##21	ENSGT00940000153321.b.b.l.b.b.a.b.a ##21	ENSGT00940000153321.b.b.l.b.b.a.a.b.b ##21	ENSGT00940000153321.b.b.l.b.b.a.a.a ##21
Mus_B	ANCESTRAL SPECIES	13	ENSGT00390000011190.y.a	ENSGT00390000012916.t	ENSGT00940000162111.d #9	ENSGT00860000136162 #10	ENSGT00940000162284.e.b.a #11	ENSGT01100000263494.a.a.a.a.b.b #12	ENSGT01050000244828.c.b.b.b.c.b #13	ENSGT00940000156081 #14	ENSGT00940000157345.a #15	ENSGT00950000183043.a.b.b.a.b.u.a.a #16	ENSGT00950000183043.a.b.b.a.a.a.a.a.a #17	ENSGT00940000160228 #18	ENSGT00530000069333.a #19	ENSGT00940000159128 #20	ENSGT00940000153321.b.b.l.a #21	ENSGT00510000048363 #22	ENSGT00940000155950 #23	ENSGT00520000055591.b #24	ENSGT00670000098074 #25	ENSGT00940000160237 #26	ENSGT00940000160266 #27	ENSGT00940000161328 #28	ENSGT00940000159011 #29	ENSGT00390000016390 #30	ENSGT00940000155211 #31	ENSGT00390000015513.a.a.a #32	ENSGT00390000015513.a.a.b #33	ENSGT00940000153321.b.b.l.b.b.a.b.b ##21	ENSGT00940000153321.b.b.l.b.b.a.b.a ##21	ENSGT00940000153321.b.b.l.b.b.a.a.b.b ##21	ENSGT00940000153321.b.b.l.b.b.a.a.a ##21
Mouse	MODERN SPECIES	4	Zfp997 (ENSMUSG00000095909) #7	Gm10139 (ENSMUSG00000063905) #8	Zfp369 (ENSMUSG00000021514) #9	Gm10775 (ENSMUSG00000074847) #10	Nlrp4f (ENSMUSG00000032999) #11	Or9s18 (ENSMUSG00000049806) #12	Or14p1 (ENSMUSG00000108426) #13	Mfsd14b (ENSMUSG00000038212) #14	Prss47 (ENSMUSG00000090658) #15	Spata31d1c (ENSMUSG00000074849) #16	Spata31 (ENSMUSG00000056223) #17	Cntnap3 (ENSMUSG00000033063) #18	Fam240b (ENSMUSG00000096537) #19	Cdk20 (ENSMUSG00000021483) #20	Ctsl (ENSMUSG00000021477) #21	Prxl2c (ENSMUSG00000021482) #22	Cdc14b (ENSMUSG00000033102) #23	Habp4 (ENSMUSG00000021476) #24	Zfp367 (ENSMUSG00000044934) #25	Slc35d2 (ENSMUSG00000033114) #26	Hsd17b3 (ENSMUSG00000033122) #27	Ercc6l2 (ENSMUSG00000021470) #28	Ptch1 (ENSMUSG00000021466) #29	Fancc (ENSMUSG00000021461) #30	Aopep (ENSMUSG00000021458) #31	Fbp1 (ENSMUSG00000069805) #32	Fbp2 (ENSMUSG00000021456) #33	Gm5141 (ENSMUSG00000091183) #34	Platr25 (ENSMUSG00000074863) #35	6720489N17Rik (ENSMUSG00000072066) #36	Zfp934 (ENSMUSG00000074865) #37
Mus_C	ANCESTRAL SPECIES	10	ENSGT00390000011190.y.a	ENSGT00390000012916.t	ENSGT00940000162111.d #9	ENSGT00860000136162 #10	ENSGT00940000162284.e.b.a #11	ENSGT01100000263494.a.a.a.a.b.b #12	ENSGT01050000244828.c.b.b.b.c.b #13	ENSGT00940000156081 #14	ENSGT00940000157345.a #15	ENSGT00950000183043.a.b.b.a.b.u.a.a #16	ENSGT00950000183043.a.b.b.a.a.a.a.a.a #17	ENSGT00940000160228 #18	ENSGT00530000069333.a #19	ENSGT00940000159128 #20	ENSGT00940000153321.b.b.l.a #21	ENSGT00510000048363 #22	ENSGT00940000155950 #23	ENSGT00520000055591.b #24	ENSGT00670000098074 #25	ENSGT00940000160237 #26	ENSGT00940000160266 #27	ENSGT00940000161328 #28	ENSGT00940000159011 #29	ENSGT00390000016390 #30	ENSGT00940000155211 #31	ENSGT00390000015513.a.a.a #32	ENSGT00390000015513.a.a.b #33	ENSGT00940000153321.b.b.l.b.b.a.b.b ##21	ENSGT00940000153321.b.b.l.b.b.a.b.a ##21	ENSGT00940000153321.b.b.l.b.b.a.a.b.b ##21	ENSGT00940000153321.b.b.l.b.b.a.a.a ##21
Steppe mouse	MODERN SPECIES	3039	Or9s18 (ENSMSIG00000021783) #12	Or14p1 (ENSMSIG00000021778) #13	ENSMSIG00000021775	Mfsd14b (ENSMSIG00000021759) #14	ENSMSIG00000021748 #15	Spata31d1c (ENSMSIG00000021735) #16	ENSMSIG00000021729	Spata31 (ENSMSIG00000021723) #17	ENSMSIG00000021707	Cntnap3 (ENSMSIG00000021683) #18	ENSMSIG00000021657	ENSMSIG00000021654	Fam240b (ENSMSIG00000021651) #19	Cdk20 (ENSMSIG00000021605) #20	Ctsl (ENSMSIG00000021593) #21	Prxl2c (ENSMSIG00000021569) #22	ENSMSIG00000021554	Cdc14b (ENSMSIG00000021401) #23	Habp4 (ENSMSIG00000021366) #24	Zfp367 (ENSMSIG00000021336) #25	Slc35d2 (ENSMSIG00000021264) #26	Hsd17b3 (ENSMSIG00000021249) #27	ENSMSIG00000021243	Ercc6l2 (ENSMSIG00000021038) #28	Ptch1 (ENSMSIG00000020849) #29
spretus	MODERN SPECIES	4	Mterf3 (MGP_SPRETEiJ_G0019536)	Gm10767 (MGP_SPRETEiJ_G0019535)	Uqcrb (MGP_SPRETEiJ_G0019534)	MGP_SPRETEiJ_G0019533 #9	Gm10775 (MGP_SPRETEiJ_G0019532) #10	Or9s18 (MGP_SPRETEiJ_G0019531) #12	Or14p1 (MGP_SPRETEiJ_G0019530) #13	Mfsd14b (MGP_SPRETEiJ_G0019529) #14	Prss47 (MGP_SPRETEiJ_G0019528) #15	Spata31d1c (MGP_SPRETEiJ_G0019527) #16	Spata31 (MGP_SPRETEiJ_G0019526) #17	Cntnap3 (MGP_SPRETEiJ_G0019525) #18	Fam240b (MGP_SPRETEiJ_G0019524) #19	Cdk20 (MGP_SPRETEiJ_G0019523) #20	Ctsl (MGP_SPRETEiJ_G0019522) #21	Prxl2c (MGP_SPRETEiJ_G0019521) #22	Cdc14b (MGP_SPRETEiJ_G0019520) #23	Habp4 (MGP_SPRETEiJ_G0019519) #24	Zfp367 (MGP_SPRETEiJ_G0019518) #25	Slc35d2 (MGP_SPRETEiJ_G0019517) #26	Hsd17b3 (MGP_SPRETEiJ_G0019516) #27	MGP_SPRETEiJ_G0019515 #28	Ptch1 (MGP_SPRETEiJ_G0019514) #29	Fancc (MGP_SPRETEiJ_G0019513) #30	Aopep (MGP_SPRETEiJ_G0019512) #31	Fbp1 (MGP_SPRETEiJ_G0019511) #32	Fbp2 (MGP_SPRETEiJ_G0019510) #33	MGP_SPRETEiJ_G0019509 ##21	Ctsm (MGP_SPRETEiJ_G0019508) ##21	Cts7 (MGP_SPRETEiJ_G0019507) ##21	Cts8 (MGP_SPRETEiJ_G0019506) ##21
Ryukyu mouse	MODERN SPECIES	4	Zfp712 (MGP_CAROLIEiJ_G0018656)	Ptdss1 (MGP_CAROLIEiJ_G0018655)	Mterf3 (MGP_CAROLIEiJ_G0018654)	Uqcrb (MGP_CAROLIEiJ_G0018653)	Nlrp4f (MGP_CAROLIEiJ_G0018652) #11	Or9s18 (MGP_CAROLIEiJ_G0018651) #12	Or14p1 (MGP_CAROLIEiJ_G0018650) #13	Mfsd14b (MGP_CAROLIEiJ_G0018649) #14	Prss47 (MGP_CAROLIEiJ_G0018648) #15	Spata31d1c (MGP_CAROLIEiJ_G0018647) #16	Spata31 (MGP_CAROLIEiJ_G0018646) #17	Cntnap3 (MGP_CAROLIEiJ_G0018645) #18	Fam240b (MGP_CAROLIEiJ_G0018644) #19	Cdk20 (MGP_CAROLIEiJ_G0018643) #20	Ctsl (MGP_CAROLIEiJ_G0018642) #21	Prxl2c (MGP_CAROLIEiJ_G0018641) #22	Cdc14b (MGP_CAROLIEiJ_G0018640) #23	Habp4 (MGP_CAROLIEiJ_G0018639) #24	Zfp367 (MGP_CAROLIEiJ_G0018638) #25	Slc35d2 (MGP_CAROLIEiJ_G0018637) #26	Hsd17b3 (MGP_CAROLIEiJ_G0018636) #27	MGP_CAROLIEiJ_G0018635 #28	Ptch1 (MGP_CAROLIEiJ_G0018634) #29	Fancc (MGP_CAROLIEiJ_G0018633) #30	Aopep (MGP_CAROLIEiJ_G0018632) #31	Fbp1 (MGP_CAROLIEiJ_G0018631) #32	Fbp2 (MGP_CAROLIEiJ_G0018630) #33	MGP_CAROLIEiJ_G0018629 ##21	Ctsm (MGP_CAROLIEiJ_G0018628) ##21	Cts7 (MGP_CAROLIEiJ_G0018627) ##21	Cts8 (MGP_CAROLIEiJ_G0018626) ##21