Artiodactyla	ANCESTRAL SPECIES	7	ENSGT00940000157444 #9	ENSGT00940000160986 #10	ENSGT00940000157238 #11	ENSGT00390000011897 #12	ENSGT00390000004860 #13	ENSGT00550000074921 #14	ENSGT01020000231252	ENSGT00940000163284 #16	ENSGT00940000156081	ENSGT00940000163669	ENSGT00950000183043.a.b.b.a.a.a.a.b #18	ENSGT00530000069333.a #19	ENSGT00940000154367.a #20	ENSGT00940000163051 #21	ENSGT00940000153505.a.b.b	ENSGT00510000048363 #22	ENSGT00940000155950 #23	ENSGT00520000055591.b #24	ENSGT00670000098074 #25	ENSGT00940000160237 #26	ENSGT00940000160266 #27	ENSGT00940000163752 #29	ENSGT00390000002550	ENSGT00940000161328	ENSGT00940000159011 #30	ENSGT00390000016390 #31	ENSGT00940000155211 #32	ENSGT00390000015513.a.a.a #33	ENSGT00390000015513.a.a.b #34	ENSGT00940000154367.b #35	ENSGT00940000153424.a.b #36
Artiodactyla_a	ANCESTRAL SPECIES	6	ENSGT00940000160986 #10	ENSGT00940000157238 #11	ENSGT00390000011897 #12	ENSGT00390000004860 #13	ENSGT00550000074921 #14	ENSGT01020000231252	ENSGT00940000163284 #16	ENSGT00940000156081	ENSGT00940000163669	ENSGT00990000210271	ENSGT00950000183043.a.b.b.a.a.a.a.b #18	ENSGT00530000069333.a #19	ENSGT00940000154367.a #20	ENSGT00940000163051 #21	ENSGT00940000153505.a.b.b	ENSGT00510000048363 #22	ENSGT00940000155950 #23	ENSGT00520000055591.b #24	ENSGT00670000098074 #25	ENSGT00940000160237 #26	ENSGT00940000160266 #27	ENSGT00940000163752 #29	ENSGT00390000002550	ENSGT00940000161328	ENSGT00940000159011 #30	ENSGT00390000016390 #31	ENSGT00940000155211 #32	ENSGT00390000015513.a.a.a #33	ENSGT00390000015513.a.a.b #34	ENSGT00940000154367.b #35	ENSGT00940000153424.a.b #36
Artiodactyla_b	ANCESTRAL SPECIES	7	ENSGT00940000160986 #10	ENSGT00940000157238 #11	ENSGT00390000011897 #12	ENSGT00390000004860 #13	ENSGT00550000074921 #14	ENSGT01020000231252	ENSGT00940000163284 #16	ENSGT00940000156081	ENSGT00940000163669	ENSGT00990000210271	ENSGT00950000183043.a.b.b.a.a.a.a.b #18	ENSGT00530000069333.a #19	ENSGT00940000154367.a #20	ENSGT00940000163051 #21	ENSGT00940000153505.a.b.b	ENSGT00510000048363 #22	ENSGT00940000155950 #23	ENSGT00520000055591.b #24	ENSGT00670000098074 #25	ENSGT00940000160237 #26	ENSGT00940000160266 #27	ENSGT00940000163752 #29	ENSGT00390000002550	ENSGT00940000161328	ENSGT00940000159011 #30	ENSGT00390000016390 #31	ENSGT00940000155211 #32	ENSGT00390000015513.a.a.a #33	ENSGT00390000015513.a.a.b #34	ENSGT00940000154367.b #35	ENSGT00940000153424.a.b #36
Pecora	ANCESTRAL SPECIES	29	ENSGT00940000154471.a.b.a.a	ENSGT00390000010053	ENSGT01030000235189	ENSGT00940000159941 #8	ENSGT00940000157444 #9	ENSGT00940000160986 #10	ENSGT00940000157238 #11	ENSGT00390000011897 #12	ENSGT00390000004860 #13	ENSGT00550000074921 #14	ENSGT00940000163284 #16	ENSGT00950000183043.a.b.b.a.a.a.a.b #18	ENSGT00530000069333.a #19	ENSGT00940000154367.a #20	ENSGT00940000163051 #21	ENSGT00510000048363 #22	ENSGT00940000155950 #23	ENSGT00520000055591.b #24	ENSGT00670000098074 #25	ENSGT00940000160237 #26	ENSGT00940000160266 #27	ENSGT00940000165777.b #28	ENSGT00940000163752 #29	ENSGT00940000161328	ENSGT00940000159011 #30	ENSGT00390000016390 #31	ENSGT00940000155211 #32	ENSGT00390000015513.a.a.a #33	ENSGT00390000015513.a.a.b #34	ENSGT00940000154367.b #35	ENSGT00940000153424.a.b #36
Yarkand deer	MODERN SPECIES	7	ENSCHYG00000007867 #7	ECM2 (ENSCHYG00000007825) #8	ASPN (ENSCHYG00000007759) #9	OMD (ENSCHYG00000007702) #10	OGN (ENSCHYG00000007671) #11	CENPP (ENSCHYG00000007599) #12	NOL8 (ENSCHYG00000007435) #13	IARS1 (ENSCHYG00000007119) #14	ENSCHYG00000007059 #15	ZNF484 (ENSCHYG00000007034) #16	ENSCHYG00000007015 #17	ENSCHYG00000006994 #18	FAM240B (ENSCHYG00000006974) #19	CTSV (ENSCHYG00000006911) #20	ZNF782 (ENSCHYG00000006871) #21	PRXL2C (ENSCHYG00000006833) #22	ENSCHYG00000006254 #23	HABP4 (ENSCHYG00000006099) #24	ZNF367 (ENSCHYG00000006054) #25	SLC35D2 (ENSCHYG00000005943) #26	HSD17B3 (ENSCHYG00000005840) #27	ENSCHYG00000005815 #28	ERCC6L2 (ENSCHYG00000005683) #29	PTCH1 (ENSCHYG00000005314) #30	FANCC (ENSCHYG00000005194) #31	AOPEP (ENSCHYG00000017977) #32	FBP1 (ENSCHYG00000017872) #33	FBP2 (ENSCHYG00000017797) #34	CTSL (ENSCHYG00000017720) #35	DAPK1 (ENSCHYG00000017064) #36	ENSCHYG00000016995 #37
Percora_a	ANCESTRAL SPECIES	29	ENSGT00940000154471.a.b.a.a	ENSGT00390000010053	ENSGT01030000235189	ENSGT00940000159941 #8	ENSGT00940000157444 #9	ENSGT00940000160986 #10	ENSGT00940000157238 #11	ENSGT00390000011897 #12	ENSGT00390000004860 #13	ENSGT00550000074921 #14	ENSGT00940000163284 #16	ENSGT00950000183043.a.b.b.a.a.a.a.b #18	ENSGT00530000069333.a #19	ENSGT00940000154367.a #20	ENSGT00940000163051 #21	ENSGT00510000048363 #22	ENSGT00940000155950 #23	ENSGT00520000055591.b #24	ENSGT00670000098074 #25	ENSGT00940000160237 #26	ENSGT00940000160266 #27	ENSGT00940000165777.b #28	ENSGT00940000163752 #29	ENSGT00940000161328	ENSGT00940000159011 #30	ENSGT00390000016390 #31	ENSGT00940000155211 #32	ENSGT00390000015513.a.a.a #33	ENSGT00390000015513.a.a.b #34	ENSGT00940000154367.b #35	ENSGT00940000153424.a.b #36
Bovidae	ANCESTRAL SPECIES	14	ENSGT00940000154471.a.b.a.a	ENSGT00390000010053	ENSGT01030000235189	ENSGT00940000159941 #8	ENSGT00940000157444 #9	ENSGT00940000160986 #10	ENSGT00940000157238 #11	ENSGT00390000011897 #12	ENSGT00390000004860 #13	ENSGT00550000074921 #14	ENSGT00940000163284 #16	ENSGT00950000183043.a.b.b.a.a.a.a.b #18	ENSGT00530000069333.a #19	ENSGT00940000154367.a #20	ENSGT00940000163051 #21	ENSGT00510000048363 #22	ENSGT00940000155950 #23	ENSGT00520000055591.b #24	ENSGT00670000098074 #25	ENSGT00940000160237 #26	ENSGT00940000160266 #27	ENSGT00940000165777.b #28	ENSGT00940000163752 #29	ENSGT00940000161328	ENSGT00940000159011 #30	ENSGT00390000016390 #31	ENSGT00940000155211 #32	ENSGT00390000015513.a.a.a #33	ENSGT00390000015513.a.a.b #34	ENSGT00940000154367.b #35	ENSGT00940000153424.a.b #36
Bovinae	ANCESTRAL SPECIES	14	ENSGT00940000154471.a.b.a.a	ENSGT00390000010053	ENSGT01030000235189	ENSGT00940000159941 #8	ENSGT00940000157444 #9	ENSGT00940000160986 #10	ENSGT00940000157238 #11	ENSGT00390000011897 #12	ENSGT00390000004860 #13	ENSGT00550000074921 #14	ENSGT00940000163284 #16	ENSGT00950000183043.a.b.b.a.a.a.a.b #18	ENSGT00530000069333.a #19	ENSGT00940000154367.a #20	ENSGT00940000163051 #21	ENSGT00510000048363 #22	ENSGT00940000155950 #23	ENSGT00520000055591.b #24	ENSGT00670000098074 #25	ENSGT00940000160237 #26	ENSGT00940000160266 #27	ENSGT00940000165777.b #28	ENSGT00940000163752 #29	ENSGT00940000161328	ENSGT00940000159011 #30	ENSGT00390000016390 #31	ENSGT00940000155211 #32	ENSGT00390000015513.a.a.a #33	ENSGT00390000015513.a.a.b #34	ENSGT00940000154367.b #35	ENSGT00940000153424.a.b #36
American bison	MODERN SPECIES	2992	IPPK (ENSBBBG00000002153)	ENSBBBG00000011664	ECM2 (ENSBBBG00000011657) #8	ASPN (ENSBBBG00000011634) #9	OMD (ENSBBBG00000002138) #10	OGN (ENSBBBG00000011606) #11	CENPP (ENSBBBG00000011595) #12	NOL8 (ENSBBBG00000007305) #13	IARS1 (ENSBBBG00000011459) #14	ZNF484 (ENSBBBG00000011408) #16	ENSBBBG00000011394 #18	FAM240B (ENSBBBG00000011389) #19	CTSV (ENSBBBG00000011377) #20	ZNF782 (ENSBBBG00000002064) #21	ENSBBBG00000002059	PRXL2C (ENSBBBG00000011344) #22	ENSBBBG00000011311 #23	HABP4 (ENSBBBG00000011198) #24	ZNF367 (ENSBBBG00000002021) #25	SLC35D2 (ENSBBBG00000011173) #26	HSD17B3 (ENSBBBG00000011138) #27	ENSBBBG00000011110 #28	ENSBBBG00000011107	PTCH1 (ENSBBBG00000001995) #30	FANCC (ENSBBBG00000011004) #31	AOPEP (ENSBBBG00000007304) #32	FBP1 (ENSBBBG00000001945) #33	FBP2 (ENSBBBG00000010933) #34	CTSL (ENSBBBG00000010912) #35	DAPK1 (ENSBBBG00000010880) #36
Bos	ANCESTRAL SPECIES	10	ENSGT00940000154471.a.b.a.a	ENSGT00390000010053	ENSGT00940000159941 #8	ENSGT00940000157444 #9	ENSGT00940000160986 #10	ENSGT00940000157238 #11	ENSGT00390000011897 #12	ENSGT00390000004860 #13	ENSGT00550000074921 #14	ENSGT00940000163284 #16	ENSGT00950000183043.a.b.b.a.a.a.a.b #18	ENSGT00530000069333.a #19	ENSGT00940000154367.a #20	ENSGT00940000163051 #21	ENSGT00950000183198.c.a.a.a.a.c.a	ENSGT00510000048363 #22	ENSGT00940000155950 #23	ENSGT00520000055591.b #24	ENSGT00670000098074 #25	ENSGT00940000160237 #26	ENSGT00940000160266 #27	ENSGT00940000165777.b #28	ENSGT00940000163752 #29	ENSGT00940000161328	ENSGT00940000159011 #30	ENSGT00390000016390 #31	ENSGT00940000155211 #32	ENSGT00390000015513.a.a.a #33	ENSGT00390000015513.a.a.b #34	ENSGT00940000154367.b #35	ENSGT00940000153424.a.b #36
Bos_b	ANCESTRAL SPECIES	3	ENSGT00940000154471.a.b.a.a	ENSGT00390000010053	ENSGT00940000159941 #8	ENSGT00940000157444 #9	ENSGT00940000160986 #10	ENSGT00940000157238 #11	ENSGT00390000011897 #12	ENSGT00390000004860 #13	ENSGT00550000074921 #14	ENSGT00940000163284 #16	ENSGT00950000183043.a.b.b.a.a.a.a.b #18	ENSGT00530000069333.a #19	ENSGT00940000154367.a #20	ENSGT00940000163051 #21	ENSGT00950000183198.c.a.a.a.a.c.a	ENSGT00510000048363 #22	ENSGT00940000155950 #23	ENSGT00520000055591.b #24	ENSGT00670000098074 #25	ENSGT00940000160237 #26	ENSGT00940000160266 #27	ENSGT00940000165777.b #28	ENSGT00940000163752 #29	ENSGT00940000159011 #30	ENSGT00390000016390 #31	ENSGT00940000155211 #32	ENSGT01100000263481.n.a.a.b.b.b.a.a.b.a.b	ENSGT00390000015513.a.a.a #33	ENSGT00390000015513.a.a.b #34	ENSGT00940000154367.b #35	ENSGT00940000153424.a.b #36
Cow	MODERN SPECIES	27	FGD3 (ENSBTAG00000006939)	BICD2 (ENSBTAG00000046549)	IPPK (ENSBTAG00000011859)	ECM2 (ENSBTAG00000024081) #8	ASPN (ENSBTAG00000011847) #9	OMD (ENSBTAG00000011836) #10	OGN (ENSBTAG00000011824) #11	CENPP (ENSBTAG00000011814) #12	NOL8 (ENSBTAG00000018613) #13	IARS1 (ENSBTAG00000000974) #14	ZNF484 (ENSBTAG00000031682) #16	ENSBTAG00000009764 #18	CTSV (ENSBTAG00000017077) #20	ZNF782 (ENSBTAG00000008836) #21	ENSBTAG00000037600	PRXL2C (ENSBTAG00000020749) #22	CDC14B (ENSBTAG00000011589) #23	HABP4 (ENSBTAG00000011586) #24	ZNF367 (ENSBTAG00000006587) #25	SLC35D2 (ENSBTAG00000019939) #26	HSD17B3 (ENSBTAG00000016867) #27	ENSBTAG00000053599 #28	ERCC6L2 (ENSBTAG00000020626) #29	PTCH1 (ENSBTAG00000009903) #30	FANCC (ENSBTAG00000017195) #31	AOPEP (ENSBTAG00000000699) #32	ENSBTAG00000049470	FBP1 (ENSBTAG00000009733) #33	FBP2 (ENSBTAG00000019554) #34	CTSL (ENSBTAG00000000720) #35	DAPK1 (ENSBTAG00000000738) #36
Bos_a	ANCESTRAL SPECIES	20	ENSGT00940000154471.a.b.a.a	ENSGT00390000010053	ENSGT00940000159941 #8	ENSGT00940000157444 #9	ENSGT00940000160986 #10	ENSGT00940000157238 #11	ENSGT00390000011897 #12	ENSGT00390000004860 #13	ENSGT00550000074921 #14	ENSGT00940000163284 #16	ENSGT00950000183043.a.b.b.a.a.a.a.b #18	ENSGT00530000069333.a #19	ENSGT00940000154367.a #20	ENSGT00940000163051 #21	ENSGT00950000183198.c.a.a.a.a.c.a	ENSGT00510000048363 #22	ENSGT00940000155950 #23	ENSGT00520000055591.b #24	ENSGT00670000098074 #25	ENSGT00940000160237 #26	ENSGT00940000160266 #27	ENSGT00940000165777.b #28	ENSGT00940000161328	ENSGT00940000159011 #30	ENSGT00390000016390 #31	ENSGT00940000155211 #32	ENSGT00390000015513.a.a.a #33	ENSGT00390000015513.a.a.b #34	ENSGT00940000154367.b #35	ENSGT00940000153424.a.b #36	ENSGT00390000001195.a
Domestic yak	MODERN SPECIES	26	BICD2 (ENSBGRG00000013860)	IPPK (ENSBGRG00000013623)	ECM2 (ENSBGRG00000013425) #8	ASPN (ENSBGRG00000013260) #9	OMD (ENSBGRG00000013215) #10	OGN (ENSBGRG00000013163) #11	CENPP (ENSBGRG00000013099) #12	NOL8 (ENSBGRG00000012947) #13	IARS1 (ENSBGRG00000012252) #14	ZNF484 (ENSBGRG00000012197) #16	ENSBGRG00000012121 #18	FAM240B (ENSBGRG00000012064) #19	CTSV (ENSBGRG00000012003) #20	ZNF782 (ENSBGRG00000011910) #21	ENSBGRG00000011890	PRXL2C (ENSBGRG00000011780) #22	ENSBGRG00000011754	ENSBGRG00000011305 #23	HABP4 (ENSBGRG00000010967) #24	ZNF367 (ENSBGRG00000010925) #25	SLC35D2 (ENSBGRG00000010244) #26	ENSBGRG00000010208	ERCC6L2 (ENSBGRG00000009781) #29	PTCH1 (ENSBGRG00000009313) #30	ENSBGRG00000009288	FANCC (ENSBGRG00000009148) #31	AOPEP (ENSBGRG00000008818) #32	ENSBGRG00000006482	CTSL (ENSBGRG00000006446) #35	FBP2 (ENSBGRG00000006288) #34	DAPK1 (ENSBGRG00000005913) #36
Wild yak	MODERN SPECIES	1603													CTSV (ENSBMUG00000001673) #20	ZNF782 (ENSBMUG00000001743) #21	ENSBMUG00000001763	PRXL2C (ENSBMUG00000001782) #22	ENSBMUG00000001939 #23	HABP4 (ENSBMUG00000002019) #24	ZNF367 (ENSBMUG00000002068) #25	ENSBMUG00000002090 #26
Caprinae	ANCESTRAL SPECIES	14	ENSGT00940000159597	ENSGT00940000154471.a.b.a.a	ENSGT00390000010053	ENSGT00940000159941 #8	ENSGT00940000157444 #9	ENSGT00940000160986 #10	ENSGT00940000157238 #11	ENSGT00390000011897 #12	ENSGT00390000004860 #13	ENSGT00550000074921 #14	ENSGT00940000163284 #16	ENSGT00950000183043.a.b.b.a.a.a.a.b #18	ENSGT00530000069333.a #19	ENSGT00940000154367.a #20	ENSGT00940000163051 #21	ENSGT00510000048363 #22	ENSGT00940000155950 #23	ENSGT00520000055591.b #24	ENSGT00670000098074 #25	ENSGT00940000160237 #26	ENSGT00940000160266 #27	ENSGT00940000165777.b #28	ENSGT00940000163752 #29	ENSGT00940000159011 #30	ENSGT00390000016390 #31	ENSGT00940000155211 #32	ENSGT00390000015513.a.a.a #33	ENSGT00390000015513.a.a.b #34	ENSGT00940000154367.b #35	ENSGT00940000153424.a.b #36	ENSGT00390000001195.a
Rambouillet Sheep	MODERN SPECIES	11	CARD19 (ENSOARG00020001118)	FGD3 (ENSOARG00020001158)	BICD2 (ENSOARG00020001190)	IPPK (ENSOARG00020001217)	CENPP (ENSOARG00020001265) #12	ECM2 (ENSOARG00020001301) #8	ASPN (ENSOARG00020001312) #9	OMD (ENSOARG00020001323) #10	OGN (ENSOARG00020001335) #11	NOL8 (ENSOARG00020001357) #13	IARS1 (ENSOARG00020001407) #14	ZNF484 (ENSOARG00020001616) #16	ENSOARG00020001669 #18	FAM240B (ENSOARG00020001683) #19	CTSV (ENSOARG00020001702) #20	PRXL2C (ENSOARG00020001718) #22	CDC14B (ENSOARG00020001763) #23	ENSOARG00020002021	HABP4 (ENSOARG00020002042) #24	ZNF367 (ENSOARG00020002077) #25	SLC35D2 (ENSOARG00020002106) #26	HSD17B3 (ENSOARG00020002196) #27	ENSOARG00020002258 #28	ERCC6L2 (ENSOARG00020002268) #29	PTCH1 (ENSOARG00020002334) #30	FANCC (ENSOARG00020002435) #31	AOPEP (ENSOARG00020002497) #32	FBP1 (ENSOARG00020002574) #33	FBP2 (ENSOARG00020002620) #34	CTSL (ENSOARG00020002639) #35	DAPK1 (ENSOARG00020002680) #36
Goat	MODERN SPECIES	27	FGD3 (ENSCHIG00000009338)	BICD2 (ENSCHIG00000022062)	IPPK (ENSCHIG00000008640)	ECM2 (ENSCHIG00000017909) #8	ASPN (ENSCHIG00000015608) #9	OMD (ENSCHIG00000025168) #10	OGN (ENSCHIG00000016330) #11	ENSCHIG00000014248 #12	NOL8 (ENSCHIG00000023837) #13	IARS1 (ENSCHIG00000023719) #14	ZNF484 (ENSCHIG00000010357) #16	ENSCHIG00000025319 #18	FAM240B (ENSCHIG00000017288) #19	CTSV (ENSCHIG00000008805) #20	ZNF782 (ENSCHIG00000016455) #21	PRXL2C (ENSCHIG00000023456) #22	ENSCHIG00000009780 #23	HABP4 (ENSCHIG00000018392) #24	ZNF367 (ENSCHIG00000020288) #25	SLC35D2 (ENSCHIG00000020406) #26	HSD17B3 (ENSCHIG00000027090) #27	ENSCHIG00000016622 #28	ERCC6L2 (ENSCHIG00000020777) #29	PTCH1 (ENSCHIG00000013837) #30	ENSCHIG00000022324	FANCC (ENSCHIG00000021780) #31	AOPEP (ENSCHIG00000011940) #32	FBP2 (ENSCHIG00000017472) #34	CTSL (ENSCHIG00000020875) #35	DAPK1 (ENSCHIG00000013443) #36	GAS1 (ENSCHIG00000007592)
Siberian musk deer	MODERN SPECIES	328	FGD3 (ENSMMSG00000009438)	BICD2 (ENSMMSG00000009303)	IPPK (ENSMMSG00000009229)	ECM2 (ENSMMSG00000009172) #8	ASPN (ENSMMSG00000009119) #9	OMD (ENSMMSG00000009072) #10	ENSMMSG00000009029	OGN (ENSMMSG00000009002) #11	CENPP (ENSMMSG00000008957) #12	NOL8 (ENSMMSG00000008845) #13	IARS1 (ENSMMSG00000008349) #14	ZNF484 (ENSMMSG00000008310) #16	FAM240B (ENSMMSG00000008287) #19	CTSV (ENSMMSG00000008251) #20	ZNF782 (ENSMMSG00000008217) #21	PRXL2C (ENSMMSG00000008179) #22	ENSMMSG00000008052 #23	HABP4 (ENSMMSG00000007990) #24	ZNF367 (ENSMMSG00000007964) #25	SLC35D2 (ENSMMSG00000007742) #26	HSD17B3 (ENSMMSG00000007613) #27	ENSMMSG00000007564	ERCC6L2 (ENSMMSG00000007507) #29	PTCH1 (ENSMMSG00000007210) #30	FANCC (ENSMMSG00000007120) #31	AOPEP (ENSMMSG00000007017) #32	FBP1 (ENSMMSG00000006947) #33	FBP2 (ENSMMSG00000006907) #34	CTSL (ENSMMSG00000006857) #35	DAPK1 (ENSMMSG00000006717) #36	GAS1 (ENSMMSG00000012475)
Cetacea	ANCESTRAL SPECIES	9	ENSGT00940000157444 #9	ENSGT00940000160986 #10	ENSGT00940000157238 #11	ENSGT00390000011897 #12	ENSGT00390000004860 #13	ENSGT00550000074921 #14	ENSGT01020000231252	ENSGT00940000163284 #16	ENSGT00940000156081	ENSGT00940000163669	ENSGT00990000210271	ENSGT00530000069333.a #19	ENSGT00940000154367.a #20	ENSGT00940000163051 #21	ENSGT00940000153505.a.b.b.l	ENSGT00510000048363 #22	ENSGT00940000155950 #23	ENSGT00520000055591.b #24	ENSGT00670000098074 #25	ENSGT00940000160237 #26	ENSGT00940000160266 #27	ENSGT00940000163752 #29	ENSGT00940000159011 #30	ENSGT00390000016390 #31	ENSGT00940000155211 #32	ENSGT00390000015513.a.a.a #33	ENSGT00390000015513.a.a.b #34	ENSGT00940000154367.b #35	ENSGT00940000153424.a.b #36	ENSGT00390000001195.a	ENSGT00940000156859
Odontoceti	ANCESTRAL SPECIES	8	ENSGT00940000159597	ENSGT00390000006976	ENSGT00390000016408	ENSGT00940000158892.b	ENSGT00990000214006	ENSGT00940000157161.b	ENSGT00530000063168.a.a.a	ENSGT00940000158148	ENSGT00940000160218	ENSGT00390000004113	ENSGT00940000163169	ENSGT00530000069333.a #19	ENSGT00940000154367.a #20	ENSGT00940000163051 #21	ENSGT00940000153505.a.b.b.l	ENSGT00510000048363 #22	ENSGT00940000155950 #23	ENSGT00520000055591.b #24	ENSGT00670000098074 #25	ENSGT00940000160237 #26	ENSGT00940000160266 #27	ENSGT00940000163752 #29	ENSGT00940000159011 #30	ENSGT00390000016390 #31	ENSGT00940000155211 #32	ENSGT00390000015513.a.a.a #33	ENSGT00390000015513.a.a.b #34	ENSGT00940000154367.b #35	ENSGT00940000153424.a.b #36	ENSGT00390000001195.a	ENSGT00940000156859
Odontoceti_a	ANCESTRAL SPECIES	15	ENSGT00390000006976	ENSGT00390000016408	ENSGT00940000158892.b	ENSGT00990000214006	ENSGT00940000157161.b	ENSGT00530000063168.a.a.a	ENSGT00940000158148	ENSGT00940000160218	ENSGT00390000004113	ENSGT00940000163169	ENSGT00410000025793.b.v	ENSGT00530000069333.a #19	ENSGT00940000154367.a #20	ENSGT00940000163051 #21	ENSGT00940000153505.a.b.b.l	ENSGT00510000048363 #22	ENSGT00940000155950 #23	ENSGT00520000055591.b #24	ENSGT00670000098074 #25	ENSGT00940000160237 #26	ENSGT00940000160266 #27	ENSGT00940000163752 #29	ENSGT00940000159011 #30	ENSGT00390000016390 #31	ENSGT00940000155211 #32	ENSGT00390000015513.a.a.a #33	ENSGT00390000015513.a.a.b #34	ENSGT00940000154367.b #35	ENSGT00940000153424.a.b #36	ENSGT00390000001195.a	ENSGT00940000156859
Odontoceti_b	ANCESTRAL SPECIES	8	ENSGT00390000016408	ENSGT00940000158892.b	ENSGT00990000214006	ENSGT00940000157161.b	ENSGT00940000153433.A.d	ENSGT00530000063168.a.a.a	ENSGT00940000158148	ENSGT00940000160218	ENSGT00390000004113	ENSGT00940000163169	ENSGT00410000025793.b.v	ENSGT00530000069333.a #19	ENSGT00940000154367.a #20	ENSGT00940000163051 #21	ENSGT00940000153505.a.b.b.l	ENSGT00510000048363 #22	ENSGT00940000155950 #23	ENSGT00520000055591.b #24	ENSGT00670000098074 #25	ENSGT00940000160237 #26	ENSGT00940000160266 #27	ENSGT00940000165777.a.b ##28	ENSGT00940000163752 #29	ENSGT00940000159011 #30	ENSGT00390000016390 #31	ENSGT00940000155211 #32	ENSGT00390000015513.a.a.a #33	ENSGT00390000015513.a.a.b #34	ENSGT00940000154367.b #35	ENSGT00940000153424.a.b #36	ENSGT00390000001195.a
Monodontidae	ANCESTRAL SPECIES	5	ENSGT00390000006976	ENSGT00390000016408	ENSGT00940000158892.b	ENSGT00990000214006	ENSGT00940000157161.b	ENSGT00940000153433.A.d	ENSGT00530000063168.a.a.a	ENSGT00940000158148	ENSGT00940000160218	ENSGT00390000004113	ENSGT00940000163169	ENSGT00410000025793.b.v	ENSGT00940000154367.a #20	ENSGT00940000163051 #21	ENSGT00940000153505.a.b.b.l	ENSGT00510000048363 #22	ENSGT00940000155950 #23	ENSGT00520000055591.b #24	ENSGT00670000098074 #25	ENSGT00940000160237 #26	ENSGT00940000160266 #27	ENSGT00940000165777.a.b ##28	ENSGT00940000163752 #29	ENSGT00940000159011 #30	ENSGT00390000016390 #31	ENSGT00940000155211 #32	ENSGT00390000015513.a.a.a #33	ENSGT00390000015513.a.a.b #34	ENSGT00940000154367.b #35	ENSGT00940000153424.a.b #36	ENSGT00390000001195.a
Beluga whale	MODERN SPECIES	67													CTSV (ENSDLEG00000016685) #20	ZNF782 (ENSDLEG00000016675) #21	ZNF510 (ENSDLEG00000016656)	AAED1 (ENSDLEG00000016639) #22	CDC14B (ENSDLEG00000016592) #23	HABP4 (ENSDLEG00000016560) #24	ZNF367 (ENSDLEG00000016540) #25	SLC35D2 (ENSDLEG00000016514) #26	HSD17B3 (ENSDLEG00000016421) #27	ENSDLEG00000016401 ##28	ERCC6L2 (ENSDLEG00000016323) #29	PTCH1 (ENSDLEG00000016270) #30	FANCC (ENSDLEG00000016231) #31	CUNH9orf3 (ENSDLEG00000016170) #32	FBP1 (ENSDLEG00000016151) #33	FBP2 (ENSDLEG00000016121) #34	CTSL (ENSDLEG00000016072) #35	DAPK1 (ENSDLEG00000016001) #36	GAS1 (ENSDLEG00000015983)
Narwhal	MODERN SPECIES	312	ENSMMNG00015013114	WNK2 (ENSMMNG00015013376)	FAM120A (ENSMMNG00015013750)	PHF2 (ENSMMNG00015013776)	BARX1 (ENSMMNG00015013808)	PTPDC1 (ENSMMNG00015013848)	ZNF169 (ENSMMNG00015013911)	ENSMMNG00015013923	ENSMMNG00015013939	ENSMMNG00015013960	FAM240B (ENSMMNG00015013992) #19	ENSMMNG00015014007	CTSV (ENSMMNG00015014020) #20	ZNF782 (ENSMMNG00015014045) #21	ZNF510 (ENSMMNG00015014065)	PRXL2C (ENSMMNG00015014084) #22	ENSMMNG00015014155 #23	HABP4 (ENSMMNG00015014223) #24	ZNF367 (ENSMMNG00015014248) #25	SLC35D2 (ENSMMNG00015014264) #26	HSD17B3 (ENSMMNG00015014294) #27	ENSMMNG00015014322 ##28	ERCC6L2 (ENSMMNG00015014361) #29	PTCH1 (ENSMMNG00015014477) #30	FANCC (ENSMMNG00015014555) #31	AOPEP (ENSMMNG00015014603) #32	FBP1 (ENSMMNG00015014647) #33	FBP2 (ENSMMNG00015014674) #34	CTSL (ENSMMNG00015014701) #35	DAPK1 (ENSMMNG00015014751) #36	GAS1 (ENSMMNG00015015767)
Vaquita	MODERN SPECIES	17	SUSD3 (ENSPSNG00000004077)	CARD19 (ENSPSNG00000004047)	ENSPSNG00000004018	WNK2 (ENSPSNG00000003927)	ENSPSNG00000003813	FAM120A (ENSPSNG00000003777)	PHF2 (ENSPSNG00000003694)	BARX1 (ENSPSNG00000003664)	PTPDC1 (ENSPSNG00000003627)	ZNF169 (ENSPSNG00000003578)	ENSPSNG00000003540	FAM240B (ENSPSNG00000003474) #19	CTSV (ENSPSNG00000003453) #20	ZNF782 (ENSPSNG00000003416) #21	ZNF510 (ENSPSNG00000003395)	PRXL2C (ENSPSNG00000003369) #22	ENSPSNG00000003275 #23	HABP4 (ENSPSNG00000003182) #24	ZNF367 (ENSPSNG00000003095) #25	SLC35D2 (ENSPSNG00000003036) #26	ENSPSNG00000002912 ##28	ERCC6L2 (ENSPSNG00000002842) #29	PTCH1 (ENSPSNG00000002681) #30	FANCC (ENSPSNG00000002554) #31	AOPEP (ENSPSNG00000002466) #32	FBP1 (ENSPSNG00000002403) #33	FBP2 (ENSPSNG00000002362) #34	CTSL (ENSPSNG00000002335) #35	DAPK1 (ENSPSNG00000002210) #36	GAS1 (ENSPSNG00000002141)	TUT7 (ENSPSNG00000001995)
Dolphin	MODERN SPECIES	4499																PRXL2C (ENSTTRG00000005829) #22	CDC14B (ENSTTRG00000005821) #23	ENSTTRG00000005786
Sperm whale	MODERN SPECIES	20	OGN (ENSPCTG00005005937) #11	CENPP (ENSPCTG00005005875) #12	NOL8 (ENSPCTG00005005594) #13	IARS (ENSPCTG00005005261) #14	ENSPCTG00005005218	ZNF484 (ENSPCTG00005005203) #16	MFSD14B (ENSPCTG00005005170)	ENSPCTG00005005128	ENSPCTG00005005106	FAM240B (ENSPCTG00005005079) #19	ENSPCTG00005006220	ENSPCTG00005006179 #20	ENSPCTG00005006046 #20	ZNF782 (ENSPCTG00005006008) #21	ZNF510 (ENSPCTG00005005976)	PRXL2C (ENSPCTG00005005942) #22	CDC14B (ENSPCTG00005005490) #23	HABP4 (ENSPCTG00005005388) #24	ZNF367 (ENSPCTG00005005358) #25	SLC35D2 (ENSPCTG00005005284) #26	HSD17B3 (ENSPCTG00005005131) #27	ERCC6L2 (ENSPCTG00005004956) #29	PTCH1 (ENSPCTG00005004684) #30	FANCC (ENSPCTG00005004565) #31	AOPEP (ENSPCTG00005004356) #32	FBP1 (ENSPCTG00005004278) #33	FBP2 (ENSPCTG00005004259) #34	ENSPCTG00005004203 #35	DAPK1 (ENSPCTG00005004110) #36	ENSPCTG00005004080	GAS1 (ENSPCTG00005004071)
Blue whale	MODERN SPECIES	17	IPPK (ENSBMSG00010006483)	BICD2 (ENSBMSG00010006514)	ENSBMSG00010006538	FGD3 (ENSBMSG00010006560)	SUSD3 (ENSBMSG00010006611)	CARD19 (ENSBMSG00010006654)	NINJ1 (ENSBMSG00010006670)	ENSBMSG00010006685 #18	ENSBMSG00010006703	FAM240B (ENSBMSG00010006714) #19	ENSBMSG00010006729	CTSV (ENSBMSG00010006749) #20	ENSBMSG00010006767	ZNF782 (ENSBMSG00010006780) #21	ZNF510 (ENSBMSG00010006790)	PRXL2C (ENSBMSG00010006808) #22	ENSBMSG00010006860 #23	ENSBMSG00010007005 #24	ZNF367 (ENSBMSG00010007039) #25	SLC35D2 (ENSBMSG00010007061) #26	HSD17B3 (ENSBMSG00010007100) #27	ERCC6L2 (ENSBMSG00010007164) #29	PTCH1 (ENSBMSG00010007237) #30	FANCC (ENSBMSG00010007314) #31	AOPEP (ENSBMSG00010007341) #32	FBP1 (ENSBMSG00010007409) #33	FBP2 (ENSBMSG00010007419) #34	CTSL (ENSBMSG00010007445) #35	DAPK1 (ENSBMSG00010007482) #36	ENSBMSG00010007542	GAS1 (ENSBMSG00010007554)
Camelidae	ANCESTRAL SPECIES	67	ENSGT00390000010053	ENSGT00940000154471.a.b.a.a	ENSGT00940000159597	ENSGT00390000006976	ENSGT00390000016408	ENSGT00940000158892.b	ENSGT00940000157161.b	ENSGT00530000063168.a.a.a	ENSGT00940000158148	ENSGT00940000160218	ENSGT00390000004113	ENSGT00530000069333.a #19	ENSGT00940000154367.a #20	ENSGT00940000163051 #21	ENSGT00940000153505.a.b.b	ENSGT00510000048363 #22	ENSGT00940000155950 #23	ENSGT00520000055591.b #24	ENSGT00670000098074 #25	ENSGT00940000160237 #26	ENSGT00940000160266 #27	ENSGT00940000163752 #29	ENSGT00940000159011 #30	ENSGT00390000016390 #31	ENSGT00940000155211 #32	ENSGT00390000015513.a.a.a #33	ENSGT00390000015513.a.a.b #34	ENSGT00940000154367.b #35	ENSGT00940000153424.a.b #36	ENSGT00390000001195.a	ENSGT00940000156859
Arabian camel	MODERN SPECIES	36	BICD2 (ENSCDRG00005009643)	FGD3 (ENSCDRG00005009922)	SUSD3 (ENSCDRG00005010096)	CARD19 (ENSCDRG00005010157)	NINJ1 (ENSCDRG00005010229)	WNK2 (ENSCDRG00005010400)	FAM120A (ENSCDRG00005016768)	PHF2 (ENSCDRG00005016927)	ENSCDRG00005017094	PTPDC1 (ENSCDRG00005017136)	FAM240B (ENSCDRG00005017263) #19	CTSV (ENSCDRG00005017297) #20	ENSCDRG00005017342	ZNF782 (ENSCDRG00005017381) #21	ENSCDRG00005017408	PRXL2C (ENSCDRG00005017435) #22	ENSCDRG00005017515 #23	HABP4 (ENSCDRG00005017843) #24	ZNF367 (ENSCDRG00005017980) #25	SLC35D2 (ENSCDRG00005018028) #26	HSD17B3 (ENSCDRG00005018135) #27	ERCC6L2 (ENSCDRG00005018264) #29	PTCH1 (ENSCDRG00005018352) #30	FANCC (ENSCDRG00005018499) #31	AOPEP (ENSCDRG00005018584) #32	FBP1 (ENSCDRG00005018637) #33	FBP2 (ENSCDRG00005018702) #34	CTSL (ENSCDRG00005018728) #35	DAPK1 (ENSCDRG00005018762) #36	ENSCDRG00005018856	TUT7 (ENSCDRG00005018902)
Suina	ANCESTRAL SPECIES	43											ENSGT00530000069333.a #19	ENSGT00940000154367.a #20	ENSGT01030000237815	ENSGT00940000163051 #21	ENSGT00940000153505.a.b.b	ENSGT00510000048363 #22	ENSGT00940000155950 #23	ENSGT00520000055591.b #24	ENSGT00670000098074 #25	ENSGT00940000160237 #26	ENSGT00940000160266 #27	ENSGT00940000161328	ENSGT00940000159011 #30	ENSGT00390000016390 #31	ENSGT00940000155211 #32	ENSGT00390000015513.a.a.a #33	ENSGT00390000015513.a.a.b #34	ENSGT00940000154367.b #35	ENSGT00940000153424.a.b #36	ENSGT00390000001195.a	ENSGT00940000156859
Pig	MODERN SPECIES	1	UBE2T (ENSSSCG00000010923)	PPP1R12B (ENSSSCG00000010925)	SYT2 (ENSSSCG00000010926)	KDM5B (ENSSSCG00000010928)	ENSSSCG00000021179	RABIF (ENSSSCG00000053080)	KLHL12 (ENSSSCG00000022787)	ENSSSCG00000034258	ADIPOR1 (ENSSSCG00000010931)	CYB5R1 (ENSSSCG00000010929)	FAM240B (ENSSSCG00000032993) #19	CTSV (ENSSSCG00000011171) #20	ENSSSCG00000031186	ZNF782 (ENSSSCG00000011167) #21	ZNF510 (ENSSSCG00000011168)	PRXL2C (ENSSSCG00000011169) #22	ENSSSCG00000027557 #23	HABP4 (ENSSSCG00000035956) #24	ENSSSCG00000039643	ZNF367 (ENSSSCG00000028981) #25	SLC35D2 (ENSSSCG00000039368) #26	ENSSSCG00000010936	HSD17B3 (ENSSSCG00000010937) #27	ERCC6L2 (ENSSSCG00000010941) #29	PTCH1 (ENSSSCG00000027312) #30	FANCC (ENSSSCG00000033654) #31	ENSSSCG00000010943 #32	FBP1 (ENSSSCG00000031174) #33	FBP2 (ENSSSCG00000010947) #34	CTSL (ENSSSCG00000010948) #35	DAPK1 (ENSSSCG00000010949) #36
Chacoan peccary	MODERN SPECIES	914											FAM240B (ENSCWAG00000013490) #19	CTSV (ENSCWAG00000013527) #20	ENSCWAG00000013557	ZNF782 (ENSCWAG00000013590) #21	ZNF510 (ENSCWAG00000013640)	PRXL2C (ENSCWAG00000013675) #22	ENSCWAG00000013731 #23	HABP4 (ENSCWAG00000014055) #24	ZNF367 (ENSCWAG00000014168) #25	SLC35D2 (ENSCWAG00000014231) #26	HSD17B3 (ENSCWAG00000014305) #27	ENSCWAG00000014530	PTCH1 (ENSCWAG00000007715) #30	FANCC (ENSCWAG00000008217) #31	AOPEP (ENSCWAG00000008450) #32	FBP1 (ENSCWAG00000008767) #33	FBP2 (ENSCWAG00000008876) #34	CTSL (ENSCWAG00000008949) #35	DAPK1 (ENSCWAG00000009007) #36	GAS1 (ENSCWAG00000009474)	TUT7 (ENSCWAG00000009534)