Rodentia_A	ANCESTRAL SPECIES	11	ENSGT00940000158049 #7	ENSGT01020000230412.A.c.a #8	ENSGT00940000163383 #9	ENSGT00940000156235 #10	ENSGT00390000012207 #11	ENSGT00940000153601.a.a #12	ENSGT00940000160918 #13	ENSGT00940000159729 #14	ENSGT00390000014476 #15	ENSGT00940000160428 #16	ENSGT00550000075041 #17	ENSGT00390000011873 #18	ENSGT00940000161613 #19	ENSGT00390000007746 #20	ENSGT00390000014148 #21	ENSGT00940000160010 #22	ENSGT00390000004458 #23	ENSGT00940000156231 #24	ENSGT00940000153181.z #26	ENSGT00950000182858.A.b.b	ENSGT01050000244868.a.a.a.a.a.b #29	ENSGT01050000244868.a.a.a.b.a.a.a ##29	ENSGT00850000133605	ENSGT01050000244868.a.a.a.a.b #33	ENSGT00390000017382 #34	ENSGT00940000154745.a #35	ENSGT00390000014118 #36	ENSGT00940000156959.B #37	ENSGT00940000157531	ENSGT01030000236295	ENSGT00940000159211.C
Hystricomorpha	ANCESTRAL SPECIES	7	ENSGT00940000158049 #7	ENSGT01020000230412.A.c.a #8	ENSGT00940000163383 #9	ENSGT00940000156235 #10	ENSGT00390000012207 #11	ENSGT00940000153601.a.a #12	ENSGT00940000160918 #13	ENSGT00940000159729 #14	ENSGT00390000014476 #15	ENSGT00940000160428 #16	ENSGT00550000075041 #17	ENSGT00390000011873 #18	ENSGT00940000161613 #19	ENSGT00390000007746 #20	ENSGT00390000014148 #21	ENSGT00940000160010 #22	ENSGT00390000004458 #23	ENSGT00940000156231 #24	ENSGT00940000153181.z #26	ENSGT00950000182858.A.b.b	ENSGT01050000244868.a.a.a.a.a.b.k.b #29	ENSGT01050000244868.a.a.a.a.a.b.k.a #30	ENSGT01050000244868.a.a.a.a.b #33	ENSGT00390000017382 #34	ENSGT00940000154745.a #35	ENSGT00390000014118 #36	ENSGT00940000156959.B #37	ENSGT00940000157531	ENSGT00940000159211.C	ENSGT00940000159789	ENSGT00940000154143.e
Naked mole-rat female	MODERN SPECIES	3	POMT1 (ENSHGLG00000016861) #7	UCK1 (ENSHGLG00000014736) #8	PRRT1B (ENSHGLG00000014409) #9	RAPGEF1 (ENSHGLG00000012902) #10	MED27 (ENSHGLG00000011262) #11	NTNG2 (ENSHGLG00000012731) #12	SETX (ENSHGLG00000010385) #13	ENSHGLG00000013502 #14	CFAP77 (ENSHGLG00000012393) #15	BARHL1 (ENSHGLG00000011858) #16	DDX31 (ENSHGLG00000013194) #17	GTF3C4 (ENSHGLG00000011891) #18	AK8 (ENSHGLG00000014699) #19	SPACA9 (ENSHGLG00000014500) #20	TSC1 (ENSHGLG00000012695) #21	GFI1B (ENSHGLG00000012212) #22	GTF3C5 (ENSHGLG00000011110) #23	ENSHGLG00000042543 #24	ENSHGLG00000014091 #25	ENSHGLG00000012657 #26	ENSHGLG00000048599 #27	ENSHGLG00000049287 #28	ENSHGLG00000012186 #29	ENSHGLG00000032443 #30	ENSHGLG00000050663 #31	ENSHGLG00000042072 #32	ENSHGLG00000033381 #33	MRPS2 (ENSHGLG00000011363) #34	PIERCE1 (ENSHGLG00000010952) #35	PPP1R26 (ENSHGLG00000049830) #36	OLFM1 (ENSHGLG00000037158) #37
Hystricomorpha_a	ANCESTRAL SPECIES	5	ENSGT00940000158049 #7	ENSGT01020000230412.A.c.a #8	ENSGT00940000163383 #9	ENSGT00940000156235 #10	ENSGT00390000012207 #11	ENSGT00940000153601.a.a #12	ENSGT00940000160918 #13	ENSGT00940000159729 #14	ENSGT00390000014476 #15	ENSGT00940000160428 #16	ENSGT00550000075041 #17	ENSGT00390000011873 #18	ENSGT00940000161613 #19	ENSGT00390000007746 #20	ENSGT00390000014148 #21	ENSGT00940000160010 #22	ENSGT00390000004458 #23	ENSGT00940000156231 #24	ENSGT00940000153181.z #26	ENSGT00950000182858.A.b.b	ENSGT00390000017382 #34	ENSGT00940000154745.a #35	ENSGT00390000014118 #36	ENSGT00940000156959.B #37	ENSGT00940000157531	ENSGT00940000159211.C	ENSGT00940000159789	ENSGT00940000154143.e	ENSGT00940000153385.b.a.a	ENSGT01090000263159	ENSGT00940000159718
Hystricomorpha_b	ANCESTRAL SPECIES	36	ENSGT00940000158049 #7	ENSGT01020000230412.A.c.a #8	ENSGT00940000163383 #9	ENSGT00940000156235 #10	ENSGT00390000012207 #11	ENSGT00940000153601.a.a #12	ENSGT00940000160918 #13	ENSGT00940000159729 #14	ENSGT00390000014476 #15	ENSGT00940000160428 #16	ENSGT00550000075041 #17	ENSGT00390000011873 #18	ENSGT00940000161613 #19	ENSGT00390000007746 #20	ENSGT00390000014148 #21	ENSGT00940000160010 #22	ENSGT00390000004458 #23	ENSGT00940000156231 #24	ENSGT00940000153181.z #26	ENSGT00950000182858.A.b.b	ENSGT01050000244868.a.a.b.b.b.a ##29	ENSGT00390000017382 #34	ENSGT00940000154745.a #35	ENSGT00390000014118 #36	ENSGT00940000156959.B #37	ENSGT00940000157531	ENSGT00940000159211.C	ENSGT00940000159789	ENSGT00940000154143.e	ENSGT00940000153385.b.a.a	ENSGT01090000263159
Degu	MODERN SPECIES	164	ENSODEG00000016290 #8	PRRT1B (ENSODEG00000016405) #9	RAPGEF1 (ENSODEG00000015868) #10	ENSODEG00000017667 #11	NTNG2 (ENSODEG00000015897) #12	ENSODEG00000016205	ENSODEG00000016387 #14	ENSODEG00000020330	CFAP77 (ENSODEG00000016491) #15	BARHL1 (ENSODEG00000016066) #16	DDX31 (ENSODEG00000015685) #17	GTF3C4 (ENSODEG00000016319) #18	AK8 (ENSODEG00000016102) #19	SPACA9 (ENSODEG00000016492) #20	TSC1 (ENSODEG00000015814) #21	GFI1B (ENSODEG00000015968) #22	GTF3C5 (ENSODEG00000015672) #23	ENSODEG00000015962 #24	ENSODEG00000015984	GBGT1 (ENSODEG00000015844)	LCN10 (ENSODEG00000015867) ##29	MRPS2 (ENSODEG00000015658) #34	PIERCE1 (ENSODEG00000016088) #35	PPP1R26 (ENSODEG00000015787) #36	OLFM1 (ENSODEG00000016174) #37	ENSODEG00000020365	FCN1 (ENSODEG00000015722)	COL5A1 (ENSODEG00000016018)	RXRA (ENSODEG00000016500)	ENSODEG00000015612	BRD3 (ENSODEG00000016350)
Long-tailed chinchilla	MODERN SPECIES	220	PRRC2B (ENSCLAG00000006317)	POMT1 (ENSCLAG00000005548) #7	UCK1 (ENSCLAG00000006376) #8	RAPGEF1 (ENSCLAG00000007111) #10	MED27 (ENSCLAG00000010715) #11	NTNG2 (ENSCLAG00000010283) #12	SETX (ENSCLAG00000012582) #13	ENSCLAG00000012676 #14	CFAP77 (ENSCLAG00000012901) #15	BARHL1 (ENSCLAG00000013082) #16	DDX31 (ENSCLAG00000008431) #17	GTF3C4 (ENSCLAG00000009930) #18	AK8 (ENSCLAG00000010073) #19	SPACA9 (ENSCLAG00000013602) #20	TSC1 (ENSCLAG00000012367) #21	GFI1B (ENSCLAG00000009914) #22	GTF3C5 (ENSCLAG00000011273) #23	CEL (ENSCLAG00000009166) #24	RALGDS (ENSCLAG00000004723) #26	GBGT1 (ENSCLAG00000005202)	ENSCLAG00000005378 #29	ENSCLAG00000005902 #30	SURF6 (ENSCLAG00000004429)	MED22 (ENSCLAG00000004487)	ENSCLAG00000006800	SURF1 (ENSCLAG00000008095)	SURF2 (ENSCLAG00000009277)	SURF4 (ENSCLAG00000010537)	STKLD1 (ENSCLAG00000011038)	REXO4 (ENSCLAG00000006919)	ADAMTS13 (ENSCLAG00000007542)
Guinea pig	MODERN SPECIES	27	POMT1 (ENSCPOG00000020217) #7	UCK1 (ENSCPOG00000038192) #8	PRRT1B (ENSCPOG00000022704) #9	RAPGEF1 (ENSCPOG00000009942) #10	MED27 (ENSCPOG00000038756) #11	NTNG2 (ENSCPOG00000024399) #12	SETX (ENSCPOG00000001492) #13	ENSCPOG00000021944 #14	CFAP77 (ENSCPOG00000033078) #15	BARHL1 (ENSCPOG00000025325) #16	DDX31 (ENSCPOG00000014243) #17	GTF3C4 (ENSCPOG00000014247) #18	AK8 (ENSCPOG00000004415) #19	SPACA9 (ENSCPOG00000004416) #20	TSC1 (ENSCPOG00000004419) #21	GFI1B (ENSCPOG00000026928) #22	GTF3C5 (ENSCPOG00000011139) #23	CEL (ENSCPOG00000002598) #24	RALGDS (ENSCPOG00000005190) #26	GBGT1 (ENSCPOG00000040276)	MRPS2 (ENSCPOG00000035320) #34	PIERCE1 (ENSCPOG00000031034) #35	PPP1R26 (ENSCPOG00000026849) #36	OLFM1 (ENSCPOG00000025461) #37	FCN1 (ENSCPOG00000013876)	COL5A1 (ENSCPOG00000023391)
Sciuridae	ANCESTRAL SPECIES	6	ENSGT00940000158049 #7	ENSGT01020000230412.A.c.a #8	ENSGT00940000163383 #9	ENSGT00940000156235 #10	ENSGT00390000012207 #11	ENSGT00940000153601.a.a #12	ENSGT00940000160918 #13	ENSGT00940000159729 #14	ENSGT00390000014476 #15	ENSGT00940000160428 #16	ENSGT00550000075041 #17	ENSGT00390000011873 #18	ENSGT00940000161613 #19	ENSGT00390000007746 #20	ENSGT00390000014148 #21	ENSGT00940000160010 #22	ENSGT00390000004458 #23	ENSGT00940000156231 #24	ENSGT00940000153181.z #26	ENSGT00950000182858.A.b.b	ENSGT00390000006980	ENSGT00390000004339	ENSGT00940000153294.m.b	ENSGT00530000064194	ENSGT00390000016800	ENSGT00530000064123	ENSGT00390000018038	ENSGT00940000159607	ENSGT00940000158379	ENSGT00940000178229	ENSGT00390000000529
Marmotini	ANCESTRAL SPECIES	1	ENSGT00950000183161.a.b	ENSGT00940000158049 #7	ENSGT01020000230412.A.c.a #8	ENSGT00940000156235 #10	ENSGT00390000012207 #11	ENSGT00940000153601.a.a #12	ENSGT00940000160918 #13	ENSGT00940000159729 #14	ENSGT00390000014476 #15	ENSGT00940000160428 #16	ENSGT00550000075041 #17	ENSGT00390000011873 #18	ENSGT00940000161613 #19	ENSGT00390000007746 #20	ENSGT00390000014148 #21	ENSGT00940000160010 #22	ENSGT00390000004458 #23	ENSGT00940000156231 #24	ENSGT00940000153181.z #26	ENSGT00950000182858.A.b.b	ENSGT01050000244868.a.a.a.a.a.b #29	ENSGT00390000006980	ENSGT00390000004339	ENSGT00940000153294.m.b	ENSGT00530000064194	ENSGT00390000016800	ENSGT00530000064123	ENSGT00390000018038	ENSGT00940000159607	ENSGT00940000158379	ENSGT00940000178229
Marmotini_b	ANCESTRAL SPECIES	2	ENSGT00950000183161.a.b	ENSGT00940000158049 #7	ENSGT01020000230412.A.c.a #8	ENSGT00940000156235 #10	ENSGT00390000012207 #11	ENSGT00940000153601.a.a #12	ENSGT00940000160918 #13	ENSGT00940000159729 #14	ENSGT00390000014476 #15	ENSGT00940000160428 #16	ENSGT00550000075041 #17	ENSGT00390000011873 #18	ENSGT00940000161613 #19	ENSGT00390000007746 #20	ENSGT00390000014148 #21	ENSGT00940000160010 #22	ENSGT00390000004458 #23	ENSGT00940000156231 #24	ENSGT00940000153181.z #26	ENSGT00950000182858.A.b.b	ENSGT01050000244868.a.a.a.a.a.b #29	ENSGT00390000006980	ENSGT00390000004339	ENSGT00940000153294.m.b	ENSGT00530000064194	ENSGT00390000016800	ENSGT00530000064123	ENSGT00390000018038	ENSGT00940000159607	ENSGT00940000158379	ENSGT00940000178229
Arctic ground squirrel	MODERN SPECIES	156					MED27 (ENSUPAG00010011579) #11	NTNG2 (ENSUPAG00010011504) #12	SETX (ENSUPAG00010011465) #13	TTF1 (ENSUPAG00010011449) #14	CFAP77 (ENSUPAG00010011437) #15	BARHL1 (ENSUPAG00010011426) #16	DDX31 (ENSUPAG00010011408) #17	ENSUPAG00010011403 #18	AK8 (ENSUPAG00010011364) #19	SPACA9 (ENSUPAG00010011343) #20	TSC1 (ENSUPAG00010011312) #21	GFI1B (ENSUPAG00010011298) #22	GTF3C5 (ENSUPAG00010011268) #23	CEL (ENSUPAG00010011253) #24	RALGDS (ENSUPAG00010009287) #26	GBGT1 (ENSUPAG00010009274)	ENSUPAG00010009264 #29	SURF6 (ENSUPAG00010009255)	MED22 (ENSUPAG00010009242)	ENSUPAG00010009198	SURF1 (ENSUPAG00010009179)	ENSUPAG00010009151	SURF4 (ENSUPAG00010009141)	STKLD1 (ENSUPAG00010009115)	REXO4 (ENSUPAG00010008958)	ADAMTS13 (ENSUPAG00010008908)	ENSUPAG00010008892
Squirrel	MODERN SPECIES	87	PRRC2B (ENSSTOG00000024364)	POMT1 (ENSSTOG00000004011) #7	UCK1 (ENSSTOG00000004058) #8	RAPGEF1 (ENSSTOG00000002466) #10	MED27 (ENSSTOG00000008925) #11	NTNG2 (ENSSTOG00000010575) #12	SETX (ENSSTOG00000021600) #13	TTF1 (ENSSTOG00000007957) #14	CFAP77 (ENSSTOG00000007973) #15	BARHL1 (ENSSTOG00000024230) #16	DDX31 (ENSSTOG00000007985) #17	ENSSTOG00000004976 #18	AK8 (ENSSTOG00000003440) #19	SPACA9 (ENSSTOG00000019976) #20	TSC1 (ENSSTOG00000003477) #21	GFI1B (ENSSTOG00000022285) #22	GTF3C5 (ENSSTOG00000023452) #23	CEL (ENSSTOG00000025882) #24	RALGDS (ENSSTOG00000010884) #26	GBGT1 (ENSSTOG00000033831)
Alpin marmot	MODERN SPECIES	47	PRRC2B (ENSMMMG00000011717)	POMT1 (ENSMMMG00000011692) #7	UCK1 (ENSMMMG00000011656) #8	RAPGEF1 (ENSMMMG00000011529) #10	MED27 (ENSMMMG00000011517) #11	NTNG2 (ENSMMMG00000011377) #12	SETX (ENSMMMG00000011147) #13	TTF1 (ENSMMMG00000011133) #14	CFAP77 (ENSMMMG00000011095) #15	BARHL1 (ENSMMMG00000011083) #16	ENSMMMG00000011072	GTF3C4 (ENSMMMG00000011057) #18	AK8 (ENSMMMG00000011029) #19	SPACA9 (ENSMMMG00000011006) #20	TSC1 (ENSMMMG00000010855) #21	GFI1B (ENSMMMG00000010832) #22	GTF3C5 (ENSMMMG00000010805) #23	CEL (ENSMMMG00000010784) #24	RALGDS (ENSMMMG00000010748) #26	GBGT1 (ENSMMMG00000010723)	ENSMMMG00000010709 #29
Eurasian red squirrel	MODERN SPECIES	6	UCK1 (ENSSVLG00005016660) #8	PRRT1B (ENSSVLG00005016788) #9	RAPGEF1 (ENSSVLG00005016872) #10	MED27 (ENSSVLG00005017453) #11	ENSSVLG00005017582	NTNG2 (ENSSVLG00005017637) #12	SETX (ENSSVLG00005017731) #13	ENSSVLG00005017981 #14	CFAP77 (ENSSVLG00005018111) #15	BARHL1 (ENSSVLG00005018193) #16	DDX31 (ENSSVLG00005018236) #17	GTF3C4 (ENSSVLG00005018400) #18	AK8 (ENSSVLG00005018451) #19	SPACA9 (ENSSVLG00005018579) #20	TSC1 (ENSSVLG00005018656) #21	GFI1B (ENSSVLG00005018870) #22	GTF3C5 (ENSSVLG00005019188) #23	CEL (ENSSVLG00005019483) #24	RALGDS (ENSSVLG00005019860) #26	GBGT1 (ENSSVLG00005020564)	ENSSVLG00005020620 #29	ENSSVLG00005020674 #33	ENSSVLG00005020798 #29	ENSSVLG00005021039 #29	ENSSVLG00005021321 #29	ENSSVLG00005021381 #33	ENSSVLG00005021439 #34	PIERCE1 (ENSSVLG00005021480) #35	PPP1R26 (ENSSVLG00005021536) #36	ENSSVLG00005021574 #37	FCN1 (ENSSVLG00005021662)