Rodentia_A	ANCESTRAL SPECIES	11	ENSGT00940000158049	ENSGT01020000230412.A.c.a #7	ENSGT00940000163383 #8	ENSGT00940000156235 #9	ENSGT00390000012207 #10	ENSGT00940000153601.a.a #11	ENSGT00940000160918	ENSGT00940000159729 #13	ENSGT00390000014476 #15	ENSGT00940000160428 #16	ENSGT00550000075041 #17	ENSGT00390000011873 #18	ENSGT00940000161613 #19	ENSGT00390000007746 #20	ENSGT00390000014148 #21	ENSGT00940000160010 #22	ENSGT00390000004458 #23	ENSGT00940000156231 #24	ENSGT00940000153181.z	ENSGT00950000182858.A.b.b #26	ENSGT01050000244868.a.a.a.a.a.b ##27	ENSGT01050000244868.a.a.a.b.a.a.a ##27	ENSGT00850000133605	ENSGT01050000244868.a.a.a.a.b ##27	ENSGT00390000017382 #28	ENSGT00940000154745.a #29	ENSGT00390000014118 #30	ENSGT00940000156959.B #31	ENSGT00940000157531 #33	ENSGT01030000236295	ENSGT00940000159211.C #34
Hystricomorpha	ANCESTRAL SPECIES	7	ENSGT00940000158049	ENSGT01020000230412.A.c.a #7	ENSGT00940000163383 #8	ENSGT00940000156235 #9	ENSGT00390000012207 #10	ENSGT00940000153601.a.a #11	ENSGT00940000160918	ENSGT00940000159729 #13	ENSGT00390000014476 #15	ENSGT00940000160428 #16	ENSGT00550000075041 #17	ENSGT00390000011873 #18	ENSGT00940000161613 #19	ENSGT00390000007746 #20	ENSGT00390000014148 #21	ENSGT00940000160010 #22	ENSGT00390000004458 #23	ENSGT00940000156231 #24	ENSGT00940000153181.z	ENSGT00950000182858.A.b.b #26	ENSGT01050000244868.a.a.a.a.a.b.k.b ##27	ENSGT01050000244868.a.a.a.a.a.b.k.a ##27	ENSGT01050000244868.a.a.a.a.b ##27	ENSGT00390000017382 #28	ENSGT00940000154745.a #29	ENSGT00390000014118 #30	ENSGT00940000156959.B #31	ENSGT00940000157531 #33	ENSGT00940000159211.C #34	ENSGT00940000159789 #35	ENSGT00940000154143.e #36
Hystricomorpha_a	ANCESTRAL SPECIES	5	ENSGT00940000158049	ENSGT01020000230412.A.c.a #7	ENSGT00940000163383 #8	ENSGT00940000156235 #9	ENSGT00390000012207 #10	ENSGT00940000153601.a.a #11	ENSGT00940000160918	ENSGT00940000159729 #13	ENSGT00390000014476 #15	ENSGT00940000160428 #16	ENSGT00550000075041 #17	ENSGT00390000011873 #18	ENSGT00940000161613 #19	ENSGT00390000007746 #20	ENSGT00390000014148 #21	ENSGT00940000160010 #22	ENSGT00390000004458 #23	ENSGT00940000156231 #24	ENSGT00940000153181.z	ENSGT00950000182858.A.b.b #26	ENSGT00390000017382 #28	ENSGT00940000154745.a #29	ENSGT00390000014118 #30	ENSGT00940000156959.B #31	ENSGT00940000157531 #33	ENSGT00940000159211.C #34	ENSGT00940000159789 #35	ENSGT00940000154143.e #36	ENSGT00940000153385.b.a.a #37	ENSGT01090000263159	ENSGT00940000159718
Hystricomorpha_b	ANCESTRAL SPECIES	36	ENSGT00940000158049	ENSGT01020000230412.A.c.a #7	ENSGT00940000163383 #8	ENSGT00940000156235 #9	ENSGT00390000012207 #10	ENSGT00940000153601.a.a #11	ENSGT00940000160918	ENSGT00940000159729 #13	ENSGT00390000014476 #15	ENSGT00940000160428 #16	ENSGT00550000075041 #17	ENSGT00390000011873 #18	ENSGT00940000161613 #19	ENSGT00390000007746 #20	ENSGT00390000014148 #21	ENSGT00940000160010 #22	ENSGT00390000004458 #23	ENSGT00940000156231 #24	ENSGT00940000153181.z	ENSGT00950000182858.A.b.b #26	ENSGT01050000244868.a.a.b.b.b.a #27	ENSGT00390000017382 #28	ENSGT00940000154745.a #29	ENSGT00390000014118 #30	ENSGT00940000156959.B #31	ENSGT00940000157531 #33	ENSGT00940000159211.C #34	ENSGT00940000159789 #35	ENSGT00940000154143.e #36	ENSGT00940000153385.b.a.a #37	ENSGT01090000263159
Degu	MODERN SPECIES	164	ENSODEG00000016290 #7	PRRT1B (ENSODEG00000016405) #8	RAPGEF1 (ENSODEG00000015868) #9	ENSODEG00000017667 #10	NTNG2 (ENSODEG00000015897) #11	ENSODEG00000016205 #12	ENSODEG00000016387 #13	ENSODEG00000020330 #14	CFAP77 (ENSODEG00000016491) #15	BARHL1 (ENSODEG00000016066) #16	DDX31 (ENSODEG00000015685) #17	GTF3C4 (ENSODEG00000016319) #18	AK8 (ENSODEG00000016102) #19	SPACA9 (ENSODEG00000016492) #20	TSC1 (ENSODEG00000015814) #21	GFI1B (ENSODEG00000015968) #22	GTF3C5 (ENSODEG00000015672) #23	ENSODEG00000015962 #24	ENSODEG00000015984 #25	GBGT1 (ENSODEG00000015844) #26	LCN10 (ENSODEG00000015867) #27	MRPS2 (ENSODEG00000015658) #28	PIERCE1 (ENSODEG00000016088) #29	PPP1R26 (ENSODEG00000015787) #30	OLFM1 (ENSODEG00000016174) #31	ENSODEG00000020365 #32	FCN1 (ENSODEG00000015722) #33	COL5A1 (ENSODEG00000016018) #34	RXRA (ENSODEG00000016500) #35	ENSODEG00000015612 #36	BRD3 (ENSODEG00000016350) #37
Long-tailed chinchilla	MODERN SPECIES	220	PRRC2B (ENSCLAG00000006317)	POMT1 (ENSCLAG00000005548)	UCK1 (ENSCLAG00000006376) #7	RAPGEF1 (ENSCLAG00000007111) #9	MED27 (ENSCLAG00000010715) #10	NTNG2 (ENSCLAG00000010283) #11	SETX (ENSCLAG00000012582)	ENSCLAG00000012676 #13	CFAP77 (ENSCLAG00000012901) #15	BARHL1 (ENSCLAG00000013082) #16	DDX31 (ENSCLAG00000008431) #17	GTF3C4 (ENSCLAG00000009930) #18	AK8 (ENSCLAG00000010073) #19	SPACA9 (ENSCLAG00000013602) #20	TSC1 (ENSCLAG00000012367) #21	GFI1B (ENSCLAG00000009914) #22	GTF3C5 (ENSCLAG00000011273) #23	CEL (ENSCLAG00000009166) #24	RALGDS (ENSCLAG00000004723)	GBGT1 (ENSCLAG00000005202) #26	ENSCLAG00000005378 ##27	ENSCLAG00000005902 ##27	SURF6 (ENSCLAG00000004429)	MED22 (ENSCLAG00000004487)	ENSCLAG00000006800	SURF1 (ENSCLAG00000008095)	SURF2 (ENSCLAG00000009277)	SURF4 (ENSCLAG00000010537)	STKLD1 (ENSCLAG00000011038)	REXO4 (ENSCLAG00000006919)	ADAMTS13 (ENSCLAG00000007542)
Guinea pig	MODERN SPECIES	27	POMT1 (ENSCPOG00000020217)	UCK1 (ENSCPOG00000038192) #7	PRRT1B (ENSCPOG00000022704) #8	RAPGEF1 (ENSCPOG00000009942) #9	MED27 (ENSCPOG00000038756) #10	NTNG2 (ENSCPOG00000024399) #11	SETX (ENSCPOG00000001492)	ENSCPOG00000021944 #13	CFAP77 (ENSCPOG00000033078) #15	BARHL1 (ENSCPOG00000025325) #16	DDX31 (ENSCPOG00000014243) #17	GTF3C4 (ENSCPOG00000014247) #18	AK8 (ENSCPOG00000004415) #19	SPACA9 (ENSCPOG00000004416) #20	TSC1 (ENSCPOG00000004419) #21	GFI1B (ENSCPOG00000026928) #22	GTF3C5 (ENSCPOG00000011139) #23	CEL (ENSCPOG00000002598) #24	RALGDS (ENSCPOG00000005190)	GBGT1 (ENSCPOG00000040276) #26	MRPS2 (ENSCPOG00000035320) #28	PIERCE1 (ENSCPOG00000031034) #29	PPP1R26 (ENSCPOG00000026849) #30	OLFM1 (ENSCPOG00000025461) #31	FCN1 (ENSCPOG00000013876) #33	COL5A1 (ENSCPOG00000023391) #34
Naked mole-rat female	MODERN SPECIES	3	POMT1 (ENSHGLG00000016861)	UCK1 (ENSHGLG00000014736) #7	PRRT1B (ENSHGLG00000014409) #8	RAPGEF1 (ENSHGLG00000012902) #9	MED27 (ENSHGLG00000011262) #10	NTNG2 (ENSHGLG00000012731) #11	SETX (ENSHGLG00000010385)	ENSHGLG00000013502 #13	CFAP77 (ENSHGLG00000012393) #15	BARHL1 (ENSHGLG00000011858) #16	DDX31 (ENSHGLG00000013194) #17	GTF3C4 (ENSHGLG00000011891) #18	AK8 (ENSHGLG00000014699) #19	SPACA9 (ENSHGLG00000014500) #20	TSC1 (ENSHGLG00000012695) #21	GFI1B (ENSHGLG00000012212) #22	GTF3C5 (ENSHGLG00000011110) #23	ENSHGLG00000042543 #24	ENSHGLG00000014091 #24	ENSHGLG00000012657	ENSHGLG00000048599	ENSHGLG00000049287	ENSHGLG00000012186 ##27	ENSHGLG00000032443 ##27	ENSHGLG00000050663	ENSHGLG00000042072 ##27	ENSHGLG00000033381 ##27	MRPS2 (ENSHGLG00000011363) #28	PIERCE1 (ENSHGLG00000010952) #29	PPP1R26 (ENSHGLG00000049830) #30	OLFM1 (ENSHGLG00000037158) #31
Sciuridae	ANCESTRAL SPECIES	6	ENSGT00940000158049	ENSGT01020000230412.A.c.a #7	ENSGT00940000163383 #8	ENSGT00940000156235 #9	ENSGT00390000012207 #10	ENSGT00940000153601.a.a #11	ENSGT00940000160918	ENSGT00940000159729 #13	ENSGT00390000014476 #15	ENSGT00940000160428 #16	ENSGT00550000075041 #17	ENSGT00390000011873 #18	ENSGT00940000161613 #19	ENSGT00390000007746 #20	ENSGT00390000014148 #21	ENSGT00940000160010 #22	ENSGT00390000004458 #23	ENSGT00940000156231 #24	ENSGT00940000153181.z	ENSGT00950000182858.A.b.b #26	ENSGT00390000006980	ENSGT00390000004339	ENSGT00940000153294.m.b	ENSGT00530000064194	ENSGT00390000016800	ENSGT00530000064123	ENSGT00390000018038	ENSGT00940000159607	ENSGT00940000158379	ENSGT00940000178229	ENSGT00390000000529
Marmotini	ANCESTRAL SPECIES	1	ENSGT00950000183161.a.b	ENSGT00940000158049	ENSGT01020000230412.A.c.a #7	ENSGT00940000156235 #9	ENSGT00390000012207 #10	ENSGT00940000153601.a.a #11	ENSGT00940000160918	ENSGT00940000159729 #13	ENSGT00390000014476 #15	ENSGT00940000160428 #16	ENSGT00550000075041 #17	ENSGT00390000011873 #18	ENSGT00940000161613 #19	ENSGT00390000007746 #20	ENSGT00390000014148 #21	ENSGT00940000160010 #22	ENSGT00390000004458 #23	ENSGT00940000156231 #24	ENSGT00940000153181.z	ENSGT00950000182858.A.b.b #26	ENSGT01050000244868.a.a.a.a.a.b ##27	ENSGT00390000006980	ENSGT00390000004339	ENSGT00940000153294.m.b	ENSGT00530000064194	ENSGT00390000016800	ENSGT00530000064123	ENSGT00390000018038	ENSGT00940000159607	ENSGT00940000158379	ENSGT00940000178229
Marmotini_b	ANCESTRAL SPECIES	2	ENSGT00950000183161.a.b	ENSGT00940000158049	ENSGT01020000230412.A.c.a #7	ENSGT00940000156235 #9	ENSGT00390000012207 #10	ENSGT00940000153601.a.a #11	ENSGT00940000160918	ENSGT00940000159729 #13	ENSGT00390000014476 #15	ENSGT00940000160428 #16	ENSGT00550000075041 #17	ENSGT00390000011873 #18	ENSGT00940000161613 #19	ENSGT00390000007746 #20	ENSGT00390000014148 #21	ENSGT00940000160010 #22	ENSGT00390000004458 #23	ENSGT00940000156231 #24	ENSGT00940000153181.z	ENSGT00950000182858.A.b.b #26	ENSGT01050000244868.a.a.a.a.a.b ##27	ENSGT00390000006980	ENSGT00390000004339	ENSGT00940000153294.m.b	ENSGT00530000064194	ENSGT00390000016800	ENSGT00530000064123	ENSGT00390000018038	ENSGT00940000159607	ENSGT00940000158379	ENSGT00940000178229
Arctic ground squirrel	MODERN SPECIES	156					MED27 (ENSUPAG00010011579) #10	NTNG2 (ENSUPAG00010011504) #11	SETX (ENSUPAG00010011465)	TTF1 (ENSUPAG00010011449) #13	CFAP77 (ENSUPAG00010011437) #15	BARHL1 (ENSUPAG00010011426) #16	DDX31 (ENSUPAG00010011408) #17	ENSUPAG00010011403 #18	AK8 (ENSUPAG00010011364) #19	SPACA9 (ENSUPAG00010011343) #20	TSC1 (ENSUPAG00010011312) #21	GFI1B (ENSUPAG00010011298) #22	GTF3C5 (ENSUPAG00010011268) #23	CEL (ENSUPAG00010011253) #24	RALGDS (ENSUPAG00010009287)	GBGT1 (ENSUPAG00010009274) #26	ENSUPAG00010009264 ##27	SURF6 (ENSUPAG00010009255)	MED22 (ENSUPAG00010009242)	ENSUPAG00010009198	SURF1 (ENSUPAG00010009179)	ENSUPAG00010009151	SURF4 (ENSUPAG00010009141)	STKLD1 (ENSUPAG00010009115)	REXO4 (ENSUPAG00010008958)	ADAMTS13 (ENSUPAG00010008908)	ENSUPAG00010008892
Squirrel	MODERN SPECIES	87	PRRC2B (ENSSTOG00000024364)	POMT1 (ENSSTOG00000004011)	UCK1 (ENSSTOG00000004058) #7	RAPGEF1 (ENSSTOG00000002466) #9	MED27 (ENSSTOG00000008925) #10	NTNG2 (ENSSTOG00000010575) #11	SETX (ENSSTOG00000021600)	TTF1 (ENSSTOG00000007957) #13	CFAP77 (ENSSTOG00000007973) #15	BARHL1 (ENSSTOG00000024230) #16	DDX31 (ENSSTOG00000007985) #17	ENSSTOG00000004976 #18	AK8 (ENSSTOG00000003440) #19	SPACA9 (ENSSTOG00000019976) #20	TSC1 (ENSSTOG00000003477) #21	GFI1B (ENSSTOG00000022285) #22	GTF3C5 (ENSSTOG00000023452) #23	CEL (ENSSTOG00000025882) #24	RALGDS (ENSSTOG00000010884)	GBGT1 (ENSSTOG00000033831) #26
Alpin marmot	MODERN SPECIES	47	PRRC2B (ENSMMMG00000011717)	POMT1 (ENSMMMG00000011692)	UCK1 (ENSMMMG00000011656) #7	RAPGEF1 (ENSMMMG00000011529) #9	MED27 (ENSMMMG00000011517) #10	NTNG2 (ENSMMMG00000011377) #11	SETX (ENSMMMG00000011147)	TTF1 (ENSMMMG00000011133) #13	CFAP77 (ENSMMMG00000011095) #15	BARHL1 (ENSMMMG00000011083) #16	ENSMMMG00000011072	GTF3C4 (ENSMMMG00000011057) #18	AK8 (ENSMMMG00000011029) #19	SPACA9 (ENSMMMG00000011006) #20	TSC1 (ENSMMMG00000010855) #21	GFI1B (ENSMMMG00000010832) #22	GTF3C5 (ENSMMMG00000010805) #23	CEL (ENSMMMG00000010784) #24	RALGDS (ENSMMMG00000010748)	GBGT1 (ENSMMMG00000010723) #26	ENSMMMG00000010709 ##27
Eurasian red squirrel	MODERN SPECIES	6	UCK1 (ENSSVLG00005016660) #7	PRRT1B (ENSSVLG00005016788) #8	RAPGEF1 (ENSSVLG00005016872) #9	MED27 (ENSSVLG00005017453) #10	ENSSVLG00005017582	NTNG2 (ENSSVLG00005017637) #11	SETX (ENSSVLG00005017731)	ENSSVLG00005017981 #13	CFAP77 (ENSSVLG00005018111) #15	BARHL1 (ENSSVLG00005018193) #16	DDX31 (ENSSVLG00005018236) #17	GTF3C4 (ENSSVLG00005018400) #18	AK8 (ENSSVLG00005018451) #19	SPACA9 (ENSSVLG00005018579) #20	TSC1 (ENSSVLG00005018656) #21	GFI1B (ENSSVLG00005018870) #22	GTF3C5 (ENSSVLG00005019188) #23	CEL (ENSSVLG00005019483) #24	RALGDS (ENSSVLG00005019860)	GBGT1 (ENSSVLG00005020564) #26	ENSSVLG00005020620 ##27	ENSSVLG00005020674 ##27	ENSSVLG00005020798 ##27	ENSSVLG00005021039 ##27	ENSSVLG00005021321 ##27	ENSSVLG00005021381 ##27	ENSSVLG00005021439 #28	PIERCE1 (ENSSVLG00005021480) #29	PPP1R26 (ENSSVLG00005021536) #30	ENSSVLG00005021574 #31	FCN1 (ENSSVLG00005021662) #33