Sarcopterygii	ANCESTRAL SPECIES	48	ENSGT00390000014272 #8	ENSGT00940000164828	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00940000154014.b.a	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000165444	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00390000016262 #31	ENSGT00940000159871 #30
Tetrapoda	ANCESTRAL SPECIES	21	ENSGT00390000014272 #8	ENSGT00940000164828	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00940000154014.b.a	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000165444	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b #36	ENSGT00950000183150.a.a #37	ENSGT00940000156241	ENSGT00940000163448
Amniota	ANCESTRAL SPECIES	14	ENSGT01080000257420.C.b.b.b ##11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00940000155904	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b ##15	ENSGT00950000182881.a.a.b #15	ENSGT00940000154014.b.a	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000165444	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b #36	ENSGT00950000183150.a.a #37	ENSGT00940000156241	ENSGT00940000163448
Mammalia	ANCESTRAL SPECIES	12	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.b ##11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b ##15	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00960000187260	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b #36	ENSGT00950000183150.a.a #37	ENSGT00940000156241
Theria	ANCESTRAL SPECIES	9	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.b ##11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b ##15	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37	ENSGT00940000156241
Eutheria	ANCESTRAL SPECIES	4	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Boreoeutheria	ANCESTRAL SPECIES	4	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Euarchontoglires	ANCESTRAL SPECIES	4	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00900000143602	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36
Primates	ANCESTRAL SPECIES	3	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00900000143602	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36
Haplorrhini	ANCESTRAL SPECIES	6	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00900000143602	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36
Simiiformes	ANCESTRAL SPECIES	7	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00900000143602	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.a #36
Catarrhini	ANCESTRAL SPECIES	8	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT00910000147258 #12	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000153299.c.b.a.b.b	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00900000143602	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00390000018423.b.a	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34
Cercopithecidae	ANCESTRAL SPECIES	6	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT00910000147258 #12	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000153299.c.b.a.b.b	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00900000143602	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00390000018423.b.a	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262.j #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34
Cercopithecinae	ANCESTRAL SPECIES	4	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT00910000147258 #12	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00940000154383.v.a.b.d	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00900000143602	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262.j.b #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.a #36
Cercopithecinae_a	ANCESTRAL SPECIES	4	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT00910000147258 #12	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00900000143602	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262.j.b #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.a #36
Cercopithecinae_b	ANCESTRAL SPECIES	20	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT00910000147258 #12	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262.j.b #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.a #36	ENSGT00950000183207.b.e.b ##36
Cercopithecinae_d	ANCESTRAL SPECIES	7	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT00910000147258 #12	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262.j.b #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.a #36	ENSGT00950000183207.b.e.b ##36
Sooty mangabey	DUPLICATION
Sooty mangabey	MODERN SPECIES	564	KCNH4 (ENSCATG00000044311) #7	HCRT (ENSCATG00000044714) #8	GHDC (ENSCATG00000044769) #9	STAT5B (ENSCATG00000009430) #10	STAT5A (ENSCATG00000039031) #11	ENSCATG00000009798 #12	STAT3 (ENSCATG00000032273) #13	CAVIN1 (ENSCATG00000003400) #14	ATP6V0A1 (ENSCATG00000031724) #15	NAGLU (ENSCATG00000039094) #16	HSD17B1 (ENSCATG00000029899) #17	COASY (ENSCATG00000036808) #18	MLX (ENSCATG00000019858) #19	PSMC3IP (ENSCATG00000044260) #20	RETREG3 (ENSCATG00000033870) #21	TUBG1 (ENSCATG00000030716) #22	TUBG2 (ENSCATG00000044381) #23	PLEKHH3 (ENSCATG00000034468) #24	CCR10 (ENSCATG00000029721) #25	CNTNAP1 (ENSCATG00000042449) #26	EZH1 (ENSCATG00000033350) #27	RAMP2 (ENSCATG00000030125) #28	VPS25 (ENSCATG00000031146) #29	WNK4 (ENSCATG00000031419) #30	ENSCATG00000030262 #31	CNTD1 (ENSCATG00000033819) #32	BECN1 (ENSCATG00000040669) #33	PSME3 (ENSCATG00000043580) #34	AOC2 (ENSCATG00000042202) #35	AOC3 (ENSCATG00000044615) #36	G6PC1 (ENSCATG00000005551) #37
Sooty mangabey	MODERN SPECIES	252			INHBA (ENSCATG00000036508)	GLI3 (ENSCATG00000036694)	ENSCATG00000030767	C7orf25 (ENSCATG00000032582)	PSMA2 (ENSCATG00000029633)	MRPL32 (ENSCATG00000038411)	HECW1 (ENSCATG00000043550)	ENSCATG00000020670	STK17A (ENSCATG00000033831)	COA1 (ENSCATG00000044042)	BLVRA (ENSCATG00000043396)	MRPS24 (ENSCATG00000033132)	URGCP (ENSCATG00000031265)	ENSCATG00000031150 ##22	UBE2D4 (ENSCATG00000030978)	ENSCATG00000021056	DBNL (ENSCATG00000029728)	PGAM2 (ENSCATG00000024470)	POLM (ENSCATG00000019986)	ENSCATG00000045184	POLD2 (ENSCATG00000040619)	GCK (ENSCATG00000038208)	YKT6 (ENSCATG00000037272)	CAMK2B (ENSCATG00000033919)	NUDCD3 (ENSCATG00000033255)	NPC1L1 (ENSCATG00000034769)	DDX56 (ENSCATG00000039389)	TMED4 (ENSCATG00000036933)	OGDH (ENSCATG00000043101)
Drill	MODERN SPECIES	1283	RAB5C (ENSMLEG00000036322)	KCNH4 (ENSMLEG00000011822) #7	GHDC (ENSMLEG00000044001) #9	STAT5B (ENSMLEG00000043637) #10	STAT5A (ENSMLEG00000030586) #11	ENSMLEG00000034501 #12	STAT3 (ENSMLEG00000030447) #13	CAVIN1 (ENSMLEG00000042027) #14	ATP6V0A1 (ENSMLEG00000029939) #15	NAGLU (ENSMLEG00000038482) #16	HSD17B1 (ENSMLEG00000038299) #17	COASY (ENSMLEG00000036787) #18	MLX (ENSMLEG00000004812) #19	PSMC3IP (ENSMLEG00000034388) #20	RETREG3 (ENSMLEG00000008179) #21	TUBG1 (ENSMLEG00000034851) #22	TUBG2 (ENSMLEG00000036092) #23	PLEKHH3 (ENSMLEG00000037744) #24	CCR10 (ENSMLEG00000001845) #25	CNTNAP1 (ENSMLEG00000031915) #26	EZH1 (ENSMLEG00000038086) #27	RAMP2 (ENSMLEG00000037831) #28	VPS25 (ENSMLEG00000038390) #29	WNK4 (ENSMLEG00000043136) #30	COA3 (ENSMLEG00000036336) #31	CNTD1 (ENSMLEG00000028693) #32	BECN1 (ENSMLEG00000044468) #33	PSME3 (ENSMLEG00000010594) #34	AOC2 (ENSMLEG00000038844) #35	AOC3 (ENSMLEG00000040484) #36	ENSMLEG00000029598 ##36
Olive baboon	MODERN SPECIES	8	RAB5C (ENSPANG00000021454)	KCNH4 (ENSPANG00000021455) #7	HCRT (ENSPANG00000021456) #8	GHDC (ENSPANG00000021458) #9	STAT5B (ENSPANG00000021460) #10	STAT5A (ENSPANG00000021452) #11	STAT3 (ENSPANG00000021451) #13	CAVIN1 (ENSPANG00000021447) #14	ATP6V0A1 (ENSPANG00000021448) #15	NAGLU (ENSPANG00000021445) #16	HSD17B1 (ENSPANG00000021444) #17	COASY (ENSPANG00000021415) #18	MLX (ENSPANG00000021416) #19	PSMC3IP (ENSPANG00000021418) #20	RETREG3 (ENSPANG00000021419) #21	TUBG1 (ENSPANG00000021420) #22	TUBG2 (ENSPANG00000021422) #23	PLEKHH3 (ENSPANG00000021424) #24	CCR10 (ENSPANG00000021425) #25	CNTNAP1 (ENSPANG00000021426) #26	EZH1 (ENSPANG00000021428) #27	RAMP2 (ENSPANG00000035532) #28	VPS25 (ENSPANG00000021414) #29	WNK4 (ENSPANG00000021413) #30	ENSPANG00000030691 #31	CNTD1 (ENSPANG00000021411) #32	BECN1 (ENSPANG00000021410) #33	PSME3 (ENSPANG00000021374) #34	AOC2 (ENSPANG00000021375) #35	AOC3 (ENSPANG00000021377) #36	G6PC1 (ENSPANG00000021378) #37
Macaca	ANCESTRAL SPECIES	4	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT00910000147258 #12	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00940000154383.v.b.a	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00900000143602	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262.j.b #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.a #36
Pig-tailed macaque	MODERN SPECIES	494	HCRT (ENSMNEG00000036772) #8	GHDC (ENSMNEG00000031751) #9	STAT5B (ENSMNEG00000032104) #10	STAT5A (ENSMNEG00000032423) #11	ENSMNEG00000030749 #12	STAT3 (ENSMNEG00000033376) #13	CAVIN1 (ENSMNEG00000044035) #14	ATP6V0A1 (ENSMNEG00000031844) #15	ENSMNEG00000044012	NAGLU (ENSMNEG00000038683) #16	HSD17B1 (ENSMNEG00000036285) #17	COASY (ENSMNEG00000042598) #18	MLX (ENSMNEG00000029431) #19	PSMC3IP (ENSMNEG00000037579) #20	RETREG3 (ENSMNEG00000032929) #21	TUBG1 (ENSMNEG00000004340) #22	TUBG2 (ENSMNEG00000040353) #23	PLEKHH3 (ENSMNEG00000031058) #24	CCR10 (ENSMNEG00000040961) #25	ENSMNEG00000029871	CNTNAP1 (ENSMNEG00000031126) #26	EZH1 (ENSMNEG00000043174) #27	RAMP2 (ENSMNEG00000033822) #28	VPS25 (ENSMNEG00000035735) #29	WNK4 (ENSMNEG00000045494) #30	ENSMNEG00000043888 #31	CNTD1 (ENSMNEG00000001170) #32	BECN1 (ENSMNEG00000031367) #33	PSME3 (ENSMNEG00000003232) #34	AOC2 (ENSMNEG00000035188) #35	AOC3 (ENSMNEG00000022911) #36
Macaca_a	ANCESTRAL SPECIES	4	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT00910000147258 #12	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00940000154383.v.b.a	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262.j.b #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.a #36	ENSGT00950000183150.a.a #37
Crab-eating macaque	MODERN SPECIES	7	KCNH4 (ENSMFAG00000003215) #7	HCRT (ENSMFAG00000052935) #8	GHDC (ENSMFAG00000001371) #9	STAT5B (ENSMFAG00000032361) #10	STAT5A (ENSMFAG00000020904) #11	STAT3 (ENSMFAG00000040992) #13	ENSMFAG00000052768 #14	ATP6V0A1 (ENSMFAG00000009940) #15	ENSMFAG00000037626	NAGLU (ENSMFAG00000039206) #16	HSD17B1 (ENSMFAG00000030629) #17	COASY (ENSMFAG00000003964) #18	MLX (ENSMFAG00000045041) #19	PSMC3IP (ENSMFAG00000044078) #20	RETREG3 (ENSMFAG00000031382) #21	TUBG1 (ENSMFAG00000002868) #22	TUBG2 (ENSMFAG00000001256) #23	CCR10 (ENSMFAG00000000870) #25	CNTNAP1 (ENSMFAG00000046099) #26	EZH1 (ENSMFAG00000032160) #27	RAMP2 (ENSMFAG00000039009) #28	VPS25 (ENSMFAG00000062659) #29	ENSMFAG00000000864 #30	COA3 (ENSMFAG00000045541) #31	CNTD1 (ENSMFAG00000040185) #32	BECN1 (ENSMFAG00000032400) #33	ENSMFAG00000060694	PSME3 (ENSMFAG00000046232) #34	AOC2 (ENSMFAG00000038881) #35	AOC3 (ENSMFAG00000048619) #36	G6PC1 (ENSMFAG00000000344) #37
Rhesus	MODERN SPECIES	7	KCNH4 (ENSMMUG00000006401) #7	HCRT (ENSMMUG00000006406) #8	GHDC (ENSMMUG00000006407) #9	STAT5B (ENSMMUG00000003437) #10	STAT5A (ENSMMUG00000010705) #11	ENSMMUG00000052220 #12	STAT3 (ENSMMUG00000010707) #13	CAVIN1 (ENSMMUG00000050192) #14	ATP6V0A1 (ENSMMUG00000022644) #15	NAGLU (ENSMMUG00000050793) #16	HSD17B1 (ENSMMUG00000009884) #17	COASY (ENSMMUG00000009886) #18	MLX (ENSMMUG00000009887) #19	PSMC3IP (ENSMMUG00000009889) #20	RETREG3 (ENSMMUG00000016796) #21	TUBG1 (ENSMMUG00000016797) #22	PLEKHH3 (ENSMMUG00000006086) #24	CCR10 (ENSMMUG00000006090) #25	CNTNAP1 (ENSMMUG00000006091) #26	EZH1 (ENSMMUG00000006093) #27	RAMP2 (ENSMMUG00000002150) #28	VPS25 (ENSMMUG00000002149) #29	WNK4 (ENSMMUG00000016616) #30	ENSMMUG00000059988 #31	CNTD1 (ENSMMUG00000012641) #32	BECN1 (ENSMMUG00000029971) #33	PSME3 (ENSMMUG00000012685) #34	AOC2 (ENSMMUG00000001870) #35	ENSMMUG00000046135 ##36	ENSMMUG00000057458	G6PC1 (ENSMMUG00000008087) #37
Vervet Monkey	MODERN SPECIES	7	KCNH4 (ENSCSAG00000003119) #7	HCRT (ENSCSAG00000003125) #8	GHDC (ENSCSAG00000003129) #9	STAT5B (ENSCSAG00000003133) #10	STAT5A (ENSCSAG00000003196) #11	STAT3 (ENSCSAG00000003215) #13	CAVIN1 (ENSCSAG00000003217) #14	ATP6V0A1 (ENSCSAG00000003223) #15	ENSCSAG00000003226	NAGLU (ENSCSAG00000003229) #16	HSD17B1 (ENSCSAG00000003232) #17	COASY (ENSCSAG00000003236) #18	MLX (ENSCSAG00000003241) #19	PSMC3IP (ENSCSAG00000003258) #20	RETREG3 (ENSCSAG00000003264) #21	TUBG1 (ENSCSAG00000003279) #22	TUBG2 (ENSCSAG00000003304) #23	PLEKHH3 (ENSCSAG00000003311) #24	CCR10 (ENSCSAG00000003317) #25	CNTNAP1 (ENSCSAG00000003325) #26	EZH1 (ENSCSAG00000003330) #27	RAMP2 (ENSCSAG00000003335) #28	VPS25 (ENSCSAG00000003337) #29	ENSCSAG00000003340 #30	ENSCSAG00000003343 #32	BECN1 (ENSCSAG00000003347) #33	PSME3 (ENSCSAG00000003352) #34	AOC2 (ENSCSAG00000003354) #35	AOC3 (ENSCSAG00000003361) #36	ENSCSAG00000003367 ##36	G6PC1 (ENSCSAG00000003371) #37
Rhinopithecus	ANCESTRAL SPECIES	27	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT00910000147258 #12	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00940000154383.v.a.b	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000153299.c.b.a.b.b	ENSGT00940000155266	ENSGT00390000015476.d.a	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00900000143602	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00390000018423.b.a	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262.j #31	ENSGT00440000033966 #32
Golden snub-nosed monkey	MODERN SPECIES	744	HCRT (ENSRROG00000042431) #8	GHDC (ENSRROG00000042027) #9	STAT5B (ENSRROG00000030551) #10	STAT5A (ENSRROG00000006532) #11	ENSRROG00000036983 #12	STAT3 (ENSRROG00000033200) #13	CAVIN1 (ENSRROG00000000546) #14	ATP6V0A1 (ENSRROG00000034763) #15	ENSRROG00000044031	NAGLU (ENSRROG00000044592) #16	HSD17B1 (ENSRROG00000045649) #17	COASY (ENSRROG00000036039) #18	MLX (ENSRROG00000033886) #19	PSMC3IP (ENSRROG00000033762) #20	RETREG3 (ENSRROG00000029584) #21	TUBG1 (ENSRROG00000039495) #22	ENSRROG00000036431	TUBG2 (ENSRROG00000031570) #23	PLEKHH3 (ENSRROG00000032252) #24	CCR10 (ENSRROG00000033240) #25	CNTNAP1 (ENSRROG00000030589) #26	EZH1 (ENSRROG00000036806) #27	ENSRROG00000028695	RAMP2 (ENSRROG00000044228) #28	VPS25 (ENSRROG00000032886) #29	WNK4 (ENSRROG00000034925) #30	ENSRROG00000032581 #31	CNTD1 (ENSRROG00000039425) #32	BECN1 (ENSRROG00000037620) #33	PSME3 (ENSRROG00000034298) #34	AOC2 (ENSRROG00000023404) #35
Black snub-nosed monkey	MODERN SPECIES	1860	HCRT (ENSRBIG00000044623) #8	GHDC (ENSRBIG00000032512) #9	STAT5B (ENSRBIG00000032232) #10	STAT5A (ENSRBIG00000006369) #11	STAT3 (ENSRBIG00000028053) #13	ENSRBIG00000042412	CAVIN1 (ENSRBIG00000040240) #14	ATP6V0A1 (ENSRBIG00000037947) #15	ENSRBIG00000026989	NAGLU (ENSRBIG00000041090) #16	HSD17B1 (ENSRBIG00000030971) #17	COASY (ENSRBIG00000037761) #18	MLX (ENSRBIG00000035331) #19	PSMC3IP (ENSRBIG00000035379) #20	RETREG3 (ENSRBIG00000029555) #21	TUBG1 (ENSRBIG00000031186) #22	ENSRBIG00000042351	TUBG2 (ENSRBIG00000038504) #23	PLEKHH3 (ENSRBIG00000033539) #24	CCR10 (ENSRBIG00000036566) #25	ENSRBIG00000029924	CNTNAP1 (ENSRBIG00000034900) #26
Hominoidea	ANCESTRAL SPECIES	13	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT00910000147258 #12	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415.h #17	ENSGT00940000160415.g #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000166004	ENSGT00940000165473.a.a	ENSGT00940000154665.h.b	ENSGT00390000014547.d.a.a	ENSGT00940000153299.c.b.a.b.b	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00900000143602	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00390000018423.b.a.a.b	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30
Hominidae	ANCESTRAL SPECIES	16	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415.h #17	ENSGT00940000160415.g #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00900000143602	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00390000018423.b.a.a.b	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	1	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415.h #17	ENSGT00940000160415.g #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00900000143602	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00390000018423.b.a.a.b	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35
Homo/Pan group	ANCESTRAL SPECIES	2	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415.h #17	ENSGT00940000160415.g #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00900000143602	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00390000018423.b.a.a.b	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35
Pan	ANCESTRAL SPECIES	3	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415.h #17	ENSGT00940000160415.g #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00900000143602	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00390000018423.b.a.a.b	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35
Chimpanzee	MODERN SPECIES	8	RAB5C (ENSPTRG00000009194)	KCNH4 (ENSPTRG00000009195) #7	HCRT (ENSPTRG00000009196) #8	GHDC (ENSPTRG00000009197) #9	STAT5B (ENSPTRG00000009198) #10	STAT5A (ENSPTRG00000009199) #11	STAT3 (ENSPTRG00000009200) #13	CAVIN1 (ENSPTRG00000040069) #14	ATP6V0A1 (ENSPTRG00000009202) #15	NAGLU (ENSPTRG00000009203) #16	ENSPTRG00000009204 #17	COASY (ENSPTRG00000009207) #18	MLX (ENSPTRG00000009208) #19	PSMC3IP (ENSPTRG00000009209) #20	RETREG3 (ENSPTRG00000009210) #21	TUBG1 (ENSPTRG00000009211) #22	TUBG2 (ENSPTRG00000009213) #23	PLEKHH3 (ENSPTRG00000009214) #24	CCR10 (ENSPTRG00000009215) #25	CNTNAP1 (ENSPTRG00000009216) #26	EZH1 (ENSPTRG00000009217) #27	ENSPTRG00000044204	RAMP2 (ENSPTRG00000009219) #28	VPS25 (ENSPTRG00000009220) #29	WNK4 (ENSPTRG00000009221) #30	COA3 (ENSPTRG00000009222) #31	CNTD1 (ENSPTRG00000009223) #32	BECN1 (ENSPTRG00000022819) #33	PSME3 (ENSPTRG00000009225) #34	AOC2 (ENSPTRG00000009226) #35	AOC3 (ENSPTRG00000030952) #36
Bonobo	MODERN SPECIES	8	KCNH4 (ENSPPAG00000036276) #7	HCRT (ENSPPAG00000029937) #8	GHDC (ENSPPAG00000024056) #9	STAT5B (ENSPPAG00000039557) #10	STAT5A (ENSPPAG00000042087) #11	STAT3 (ENSPPAG00000040541) #13	CAVIN1 (ENSPPAG00000034760) #14	ATP6V0A1 (ENSPPAG00000034654) #15	NAGLU (ENSPPAG00000027189) #16	ENSPPAG00000034980 #17	HSD17B1 (ENSPPAG00000042092) #17	COASY (ENSPPAG00000039953) #18	MLX (ENSPPAG00000037977) #19	PSMC3IP (ENSPPAG00000029924) #20	RETREG3 (ENSPPAG00000042854) #21	TUBG1 (ENSPPAG00000028905) #22	TUBG2 (ENSPPAG00000038192) #23	PLEKHH3 (ENSPPAG00000027950) #24	CCR10 (ENSPPAG00000035651) #25	ENSPPAG00000033184	CNTNAP1 (ENSPPAG00000030181) #26	EZH1 (ENSPPAG00000039453) #27	ENSPPAG00000042544	RAMP2 (ENSPPAG00000038060) #28	VPS25 (ENSPPAG00000033993) #29	WNK4 (ENSPPAG00000041116) #30	COA3 (ENSPPAG00000039760) #31	CNTD1 (ENSPPAG00000034086) #32	BECN1 (ENSPPAG00000037995) #33	PSME3 (ENSPPAG00000043945) #34	AOC2 (ENSPPAG00000043842) #35
Human	MODERN SPECIES	8	RAB5C (ENSG00000108774)	KCNH4 (ENSG00000089558) #7	HCRT (ENSG00000161610) #8	GHDC (ENSG00000167925) #9	STAT5B (ENSG00000173757) #10	STAT5A (ENSG00000126561) #11	STAT3 (ENSG00000168610) #13	CAVIN1 (ENSG00000177469) #14	ATP6V0A1 (ENSG00000033627) #15	NAGLU (ENSG00000108784) #16	HSD17B1 (ENSG00000108786) #17	COASY (ENSG00000068120) #18	MLX (ENSG00000108788) #19	PSMC3IP (ENSG00000131470) #20	RETREG3 (ENSG00000141699) #21	TUBG1 (ENSG00000131462) #22	TUBG2 (ENSG00000037042) #23	PLEKHH3 (ENSG00000068137) #24	CCR10 (ENSG00000184451) #25	CNTNAP1 (ENSG00000108797) #26	EZH1 (ENSG00000108799) #27	RAMP2 (ENSG00000131477) #28	VPS25 (ENSG00000131475) #29	WNK4 (ENSG00000126562) #30	COA3 (ENSG00000183978) #31	CNTD1 (ENSG00000176563) #32	BECN1 (ENSG00000126581) #33	PSME3 (ENSG00000131467) #34	AOC2 (ENSG00000131480) #35	AOC3 (ENSG00000131471) #36	G6PC1 (ENSG00000131482) #37
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	106	GHDC (ENSNLEG00000011431) #9	STAT5B (ENSNLEG00000011444) #10	ENSNLEG00000027072 #11	ENSNLEG00000029917 #12	STAT3 (ENSNLEG00000011454) #13	ENSNLEG00000035131	CAVIN1 (ENSNLEG00000011531) #14	ATP6V0A1 (ENSNLEG00000011534) #15	ENSNLEG00000033736	NAGLU (ENSNLEG00000011557) #16	HSD17B1 (ENSNLEG00000011561) #17	COASY (ENSNLEG00000011586) #18	ENSNLEG00000011638 #19	ENSNLEG00000011650 #20	RETREG3 (ENSNLEG00000011676) #21	TUBG1 (ENSNLEG00000011686) #22	ENSNLEG00000031985	TUBG2 (ENSNLEG00000032269) #23	ENSNLEG00000011745 #24	CCR10 (ENSNLEG00000011750) #25	ENSNLEG00000032229	CNTNAP1 (ENSNLEG00000011756) #26	ENSNLEG00000011781 #27	RAMP2 (ENSNLEG00000011795) #28	VPS25 (ENSNLEG00000011797) #29	WNK4 (ENSNLEG00000011816) #30	COA3 (ENSNLEG00000011824) #31	CNTD1 (ENSNLEG00000011829) #32	BECN1 (ENSNLEG00000011840) #33	PSME3 (ENSNLEG00000011860) #34	ENSNLEG00000030291 #35
Gibbon	MODERN SPECIES	7	CDK13 (ENSNLEG00000003097)	MPLKIP (ENSNLEG00000028028)	SUGCT (ENSNLEG00000003120)	INHBA (ENSNLEG00000003153)	GLI3 (ENSNLEG00000003160)	C7orf25 (ENSNLEG00000003174)	ENSNLEG00000027384	PSMA2 (ENSNLEG00000003177)	MRPL32 (ENSNLEG00000027404)	HECW1 (ENSNLEG00000003209)	ENSNLEG00000035608	STK17A (ENSNLEG00000003304)	COA1 (ENSNLEG00000003316)	BLVRA (ENSNLEG00000003333)	MRPS24 (ENSNLEG00000033007)	ENSNLEG00000026683 #22	URGCP (ENSNLEG00000003351)	UBE2D4 (ENSNLEG00000003364)	DBNL (ENSNLEG00000003395)	PGAM2 (ENSNLEG00000003550)	ENSNLEG00000003555	ENSNLEG00000003564	POLD2 (ENSNLEG00000003570)	MYL7 (ENSNLEG00000003674)	GCK (ENSNLEG00000028208)	YKT6 (ENSNLEG00000003689)	CAMK2B (ENSNLEG00000003715)	NUDCD3 (ENSNLEG00000003732)	NPC1L1 (ENSNLEG00000003753)	DDX56 (ENSNLEG00000003816)	ENSNLEG00000029010
Platyrrhini	ANCESTRAL SPECIES	1	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415.i #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a.e #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.a #36	ENSGT00950000183150.a.a #37
Cebidae	ANCESTRAL SPECIES	10	ENSGT00940000154971.c	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415.i #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604.k #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a.e #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.a #36	ENSGT00950000183150.a.a #37
Cebidae_a	ANCESTRAL SPECIES	69	ENSGT00940000154971.c	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415.i #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604.k #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c.i #33	ENSGT00950000183098.a.e #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.a #36	ENSGT00940000154259.l.c.b.a
Capuchin	DUPLICATION
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	415	RAB5C (ENSCCAG00000025940)	KCNH4 (ENSCCAG00000034000) #7	HCRT (ENSCCAG00000020143) #8	GHDC (ENSCCAG00000027794) #9	STAT5B (ENSCCAG00000035457) #10	STAT5A (ENSCCAG00000024679) #11	STAT3 (ENSCCAG00000026387) #13	CAVIN1 (ENSCCAG00000026647) #14	ATP6V0A1 (ENSCCAG00000024761) #15	NAGLU (ENSCCAG00000003973) #16	HSD17B1 (ENSCCAG00000027913) #17	COASY (ENSCCAG00000031974) #18	MLX (ENSCCAG00000025082) #19	PSMC3IP (ENSCCAG00000035025) #20	RETREG3 (ENSCCAG00000037046) #21	ENSCCAG00000022100 #22	TUBG2 (ENSCCAG00000035060) #23	PLEKHH3 (ENSCCAG00000028692) #24	CCR10 (ENSCCAG00000028317) #25	CNTNAP1 (ENSCCAG00000027069) #26	EZH1 (ENSCCAG00000030679) #27	RAMP2 (ENSCCAG00000028784) #28	ENSCCAG00000035459 #29	VPS25 (ENSCCAG00000023256) #29	WNK4 (ENSCCAG00000033745) #30	COA3 (ENSCCAG00000032729) #31	CNTD1 (ENSCCAG00000027917) #32	BECN1 (ENSCCAG00000035360) #33	ENSCCAG00000025926 #34	AOC2 (ENSCCAG00000008067) #35	AOC3 (ENSCCAG00000032694) #36
Capuchin	MODERN SPECIES	282														NR0B1 (ENSCCAG00000032350)	IL1RAPL1 (ENSCCAG00000026068)	ENSCCAG00000031811 #22	ENSCCAG00000020805	ENSCCAG00000025117	DCAF8L1 (ENSCCAG00000024695)	ENSCCAG00000025352
Capuchin	MODERN SPECIES	39	CSRP3 (ENSCCAG00000037898)	ZDHHC13 (ENSCCAG00000031657)	PTPN5 (ENSCCAG00000031767)	IGSF22 (ENSCCAG00000015473)	TMEM86A (ENSCCAG00000022653)	ENSCCAG00000030365	ENSCCAG00000036425	ENSCCAG00000037680	UEVLD (ENSCCAG00000036814)	ENSCCAG00000033011	TSG101 (ENSCCAG00000036169)	ENSCCAG00000020722	LDHAL6A (ENSCCAG00000031041)	LDHC (ENSCCAG00000031200)	ENSCCAG00000029060	ENSCCAG00000028937 #22	GTF2H1 (ENSCCAG00000028407)	HPS5 (ENSCCAG00000032081)	ENSCCAG00000024577	ENSCCAG00000024041	SAA4 (ENSCCAG00000025050)	ENSCCAG00000022385	SAAL1 (ENSCCAG00000025101)	TPH1 (ENSCCAG00000023915)	SERGEF (ENSCCAG00000037352)	KCNC1 (ENSCCAG00000033090)	MYOD1 (ENSCCAG00000036433)	OTOG (ENSCCAG00000027583)	USH1C (ENSCCAG00000030798)	ABCC8 (ENSCCAG00000029653)	KCNJ11 (ENSCCAG00000019232)
Bolivian squirrel monkey	MODERN SPECIES	208	ENSSBOG00000032552	KCNH4 (ENSSBOG00000033701) #7	HCRT (ENSSBOG00000019042) #8	GHDC (ENSSBOG00000021411) #9	STAT5B (ENSSBOG00000012375) #10	ENSSBOG00000028018 #11	STAT3 (ENSSBOG00000035000) #13	CAVIN1 (ENSSBOG00000030548) #14	ENSSBOG00000033421	ATP6V0A1 (ENSSBOG00000033048) #15	NAGLU (ENSSBOG00000011806) #16	HSD17B1 (ENSSBOG00000034608) #17	COASY (ENSSBOG00000033931) #18	MLX (ENSSBOG00000025119) #19	PSMC3IP (ENSSBOG00000035416) #20	TUBG1 (ENSSBOG00000033379) #22	RETREG3 (ENSSBOG00000026263) #21	TUBG2 (ENSSBOG00000031124) #23	PLEKHH3 (ENSSBOG00000033476) #24	CCR10 (ENSSBOG00000024290) #25	CNTNAP1 (ENSSBOG00000023244) #26	EZH1 (ENSSBOG00000026195) #27	RAMP2 (ENSSBOG00000030073) #28	VPS25 (ENSSBOG00000035364) #29	COA3 (ENSSBOG00000027470) #31	WNK4 (ENSSBOG00000030076) #30	CNTD1 (ENSSBOG00000000042) #32	ENSSBOG00000021469 #33	PSME3 (ENSSBOG00000024784) #34	AOC2 (ENSSBOG00000027601) #35	AOC3 (ENSSBOG00000030760) #36
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	734	KCNH4 (ENSANAG00000033256) #7	HCRT (ENSANAG00000035682) #8	GHDC (ENSANAG00000038508) #9	STAT5B (ENSANAG00000037240) #10	ENSANAG00000021113 #11	STAT3 (ENSANAG00000035843) #13	CAVIN1 (ENSANAG00000034141) #14	ATP6V0A1 (ENSANAG00000025626) #15	NAGLU (ENSANAG00000036738) #16	ENSANAG00000029773 #17	ENSANAG00000024517 #17	COASY (ENSANAG00000028999) #18	MLX (ENSANAG00000022921) #19	PSMC3IP (ENSANAG00000028427) #20	RETREG3 (ENSANAG00000011628) #21	TUBG1 (ENSANAG00000028328) #22	PLEKHH3 (ENSANAG00000038527) #24	CCR10 (ENSANAG00000027464) #25	CNTNAP1 (ENSANAG00000026845) #26	EZH1 (ENSANAG00000030187) #27	RAMP2 (ENSANAG00000038309) #28	VPS25 (ENSANAG00000038437) #29	WNK4 (ENSANAG00000037047) #30	COA3 (ENSANAG00000026099) #31	CNTD1 (ENSANAG00000027936) #32	BECN1 (ENSANAG00000038411) #33	ENSANAG00000023115 #34	AOC2 (ENSANAG00000033481) #35	AOC3 (ENSANAG00000020342) #36	ENSANAG00000038070 ##36	ENSANAG00000038499
Mas night monkey	MODERN SPECIES	814									ENSANAG00000023417	CBLL2 (ENSANAG00000024818)	PHEX (ENSANAG00000021236)	ENSANAG00000030126	ENSANAG00000032026	SMS (ENSANAG00000031156)	MBTPS2 (ENSANAG00000022738)	ENSANAG00000034743 #22	SMPX (ENSANAG00000035900)	KLHL34 (ENSANAG00000020210)	CNKSR2 (ENSANAG00000030385)	ENSANAG00000019923	ENSANAG00000000067	RPS6KA3 (ENSANAG00000026591)	ENSANAG00000025820	ENSANAG00000030856	MAP7D2 (ENSANAG00000037417)	ENSANAG00000026646	ENSANAG00000034832	ENSANAG00000030233 ##34	MAP3K15 (ENSANAG00000034023)	PDHA1 (ENSANAG00000030855)	ADGRG2 (ENSANAG00000034597)
Tarsier	MODERN SPECIES	1933									ATP6V0A1 (ENSTSYG00000005183) #15	NAGLU (ENSTSYG00000028598) #16	HSD17B1 (ENSTSYG00000025793) #17	COASY (ENSTSYG00000026514) #18	MLX (ENSTSYG00000007534) #19	PSMC3IP (ENSTSYG00000007620) #20	RETREG3 (ENSTSYG00000007672) #21	TUBG1 (ENSTSYG00000035742) #22
Strepsirrhini	ANCESTRAL SPECIES	4	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Lemuriformes	ANCESTRAL SPECIES	2	ENSGT00940000154971.a.a	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.c #36	ENSGT00950000183207.b.e.d #36
Lemuriformes_a	ANCESTRAL SPECIES		ENSGT00940000154971.a.a	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.c #36	ENSGT00950000183207.b.e.d #36
Coquerels sifaka	MODERN SPECIES	672	ENSPCOG00000026327	KCNH4 (ENSPCOG00000014654) #7	HCRT (ENSPCOG00000014217) #8	GHDC (ENSPCOG00000013893) #9	STAT5B (ENSPCOG00000024946) #10	STAT5A (ENSPCOG00000023163) #11	STAT3 (ENSPCOG00000027850) #13	CAVIN1 (ENSPCOG00000021159) #14	ATP6V0A1 (ENSPCOG00000011134) #15	NAGLU (ENSPCOG00000026129) #16	HSD17B1 (ENSPCOG00000025503) #17	ENSPCOG00000019461 #18	MLX (ENSPCOG00000015394) #19	PSMC3IP (ENSPCOG00000007051) #20	RETREG3 (ENSPCOG00000024623) #21	TUBG1 (ENSPCOG00000022279) #22	TUBG2 (ENSPCOG00000026674) #23	PLEKHH3 (ENSPCOG00000016889) #24	CCR10 (ENSPCOG00000016970) #25	CNTNAP1 (ENSPCOG00000007810) #26	EZH1 (ENSPCOG00000024585) #27	RAMP2 (ENSPCOG00000021480) #28	VPS25 (ENSPCOG00000019464) #29	WNK4 (ENSPCOG00000007130) #30	COA3 (ENSPCOG00000013088) #31	CNTD1 (ENSPCOG00000022551) #32	BECN1 (ENSPCOG00000027315) #33	PSME3 (ENSPCOG00000018396) #34	AOC2 (ENSPCOG00000023288) #35	ENSPCOG00000001852 #36	ENSPCOG00000009608 #36
Mouse lemur	MODERN SPECIES	7	KCNH4 (ENSMICG00000047175) #7	HCRT (ENSMICG00000011976) #8	GHDC (ENSMICG00000011980) #9	STAT5B (ENSMICG00000011988) #10	STAT5A (ENSMICG00000012005) #11	STAT3 (ENSMICG00000012015) #13	CAVIN1 (ENSMICG00000034412) #14	ENSMICG00000031037	ATP6V0A1 (ENSMICG00000010226) #15	NAGLU (ENSMICG00000047584) #16	HSD17B1 (ENSMICG00000045470) #17	COASY (ENSMICG00000010251) #18	MLX (ENSMICG00000010258) #19	PSMC3IP (ENSMICG00000010266) #20	RETREG3 (ENSMICG00000046440) #21	TUBG1 (ENSMICG00000047848) #22	TUBG2 (ENSMICG00000044881) #23	PLEKHH3 (ENSMICG00000010298) #24	CCR10 (ENSMICG00000010311) #25	CNTNAP1 (ENSMICG00000010313) #26	EZH1 (ENSMICG00000010327) #27	RAMP2 (ENSMICG00000028500) #28	VPS25 (ENSMICG00000010357) #29	WNK4 (ENSMICG00000010362) #30	COA3 (ENSMICG00000045288) #31	CNTD1 (ENSMICG00000010384) #32	BECN1 (ENSMICG00000010391) #33	PSME3 (ENSMICG00000010398) #34	AOC2 (ENSMICG00000031928) #35	ENSMICG00000027130 #36	ENSMICG00000046526 #36
Bushbaby	MODERN SPECIES	133	RAB5C (ENSOGAG00000009456)	KCNH4 (ENSOGAG00000017197) #7	HCRT (ENSOGAG00000002433) #8	GHDC (ENSOGAG00000002434) #9	STAT5B (ENSOGAG00000017198) #10	STAT5A (ENSOGAG00000001513) #11	STAT3 (ENSOGAG00000001517) #13	CAVIN1 (ENSOGAG00000029167) #14	ATP6V0A1 (ENSOGAG00000009857) #15	NAGLU (ENSOGAG00000012198) #16	HSD17B1 (ENSOGAG00000012195) #17	COASY (ENSOGAG00000009863) #18	MLX (ENSOGAG00000009867) #19	PSMC3IP (ENSOGAG00000025433) #20	RETREG3 (ENSOGAG00000009874) #21	TUBG1 (ENSOGAG00000009883) #22	TUBG2 (ENSOGAG00000009878) #23	PLEKHH3 (ENSOGAG00000009889) #24	CCR10 (ENSOGAG00000031984) #25	CNTNAP1 (ENSOGAG00000009895) #26	EZH1 (ENSOGAG00000009904) #27	VPS25 (ENSOGAG00000009911) #29	WNK4 (ENSOGAG00000009916) #30	COA3 (ENSOGAG00000009928) #31	CNTD1 (ENSOGAG00000009929) #32	BECN1 (ENSOGAG00000009933) #33	PSME3 (ENSOGAG00000009420) #34	AOC2 (ENSOGAG00000009425) #35	ENSOGAG00000013065 #36	ENSOGAG00000028463 #36	G6PC1 (ENSOGAG00000009428) #37
Euarchontoglires_A	ANCESTRAL SPECIES	4	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00900000143602	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36
Tree shrew	MODERN SPECIES	8663																TUBG1 (ENSTBEG00000015835) #22
Glires	ANCESTRAL SPECIES	3	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00900000143602	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36
Lagomorpha	ANCESTRAL SPECIES		ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Pika	MODERN SPECIES	2523												ENSOPRG00000012312 #18	MLX (ENSOPRG00000012322) #19	PSMC3IP (ENSOPRG00000012331) #20	RETREG3 (ENSOPRG00000012339) #21	ENSOPRG00000012349 #22
Rabbit	MODERN SPECIES	10	RAB5C (ENSOCUG00000013307)	KCNH4 (ENSOCUG00000013312) #7	HCRT (ENSOCUG00000013324) #8	GHDC (ENSOCUG00000026428) #9	STAT5B (ENSOCUG00000005078) #10	STAT5A (ENSOCUG00000023066) #11	STAT3 (ENSOCUG00000011034) #13	ENSOCUG00000026764 #14	ATP6V0A1 (ENSOCUG00000015169) #15	NAGLU (ENSOCUG00000000581) #16	ENSOCUG00000022009 #17	COASY (ENSOCUG00000015195) #18	MLX (ENSOCUG00000015210) #19	PSMC3IP (ENSOCUG00000015214) #20	RETREG3 (ENSOCUG00000015226) #21	TUBG1 (ENSOCUG00000015260) #22	PLEKHH3 (ENSOCUG00000021704) #24	CCR10 (ENSOCUG00000023791) #25	CNTNAP1 (ENSOCUG00000007327) #26	EZH1 (ENSOCUG00000006045) #27	RAMP2 (ENSOCUG00000023670) #28	VPS25 (ENSOCUG00000034593) #29	WNK4 (ENSOCUG00000015928) #30	COA3 (ENSOCUG00000015948) #31	CNTD1 (ENSOCUG00000037401) #32	ENSOCUG00000015964 #33	PSME3 (ENSOCUG00000015986) #34	AOC2 (ENSOCUG00000015997) #35	AOC3 (ENSOCUG00000033151) #36	G6PC1 (ENSOCUG00000016018) #37	AARSD1 (ENSOCUG00000009259)
Rodentia	ANCESTRAL SPECIES	4	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00900000143602	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Myomorpha	ANCESTRAL SPECIES		ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Muroidea	ANCESTRAL SPECIES		ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a.r #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a.r #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Chinese hamster chok1gshd	MODERN SPECIES	33	Kcnh4 (ENSCGRG00001019735) #7	Hcrt (ENSCGRG00001019538) #8	Ghdc (ENSCGRG00001024952) #9	ENSCGRG00001015122 #10	ENSCGRG00001019326	Stat5a (ENSCGRG00001021305) #11	Stat3 (ENSCGRG00001013136) #13	Cavin1 (ENSCGRG00001017248) #14	Atp6v0a1 (ENSCGRG00001012097) #15	Naglu (ENSCGRG00001003319) #16	Hsd17b1 (ENSCGRG00001014185) #17	Coasy (ENSCGRG00001017604) #18	Mlx (ENSCGRG00001011276) #19	Psmc3ip (ENSCGRG00001017004) #20	Retreg3 (ENSCGRG00001011912) #21	Tubg1 (ENSCGRG00001001818) #22	ENSCGRG00001012361	Tubg2 (ENSCGRG00001018359) #23	Plekhh3 (ENSCGRG00001016828) #24	Ccr10 (ENSCGRG00001000112) #25	Cntnap1 (ENSCGRG00001023354) #26	Ezh1 (ENSCGRG00001004522) #27	Ramp2 (ENSCGRG00001006427) #28	Vps25 (ENSCGRG00001015636) #29	Wnk4 (ENSCGRG00001013436) #30	Coa3 (ENSCGRG00001024599) #31	Cntd1 (ENSCGRG00001014932) #32	Becn1 (ENSCGRG00001019061) #33	ENSCGRG00001014333 #34	Aoc2 (ENSCGRG00001018276) #35	Aoc3 (ENSCGRG00001017577) #36
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a.r #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Northern American deer mouse	MODERN SPECIES	21	Rab5c (ENSPEMG00000017971)	Kcnh4 (ENSPEMG00000015672) #7	Hcrt (ENSPEMG00000028528) #8	Ghdc (ENSPEMG00000016782) #9	Stat5b (ENSPEMG00000010332) #10	Stat5a (ENSPEMG00000015265) #11	Stat3 (ENSPEMG00000015860) #13	Cavin1 (ENSPEMG00000027244) #14	Atp6v0a1 (ENSPEMG00000004552) #15	Naglu (ENSPEMG00000000599) #16	Hsd17b1 (ENSPEMG00000010252) #17	Coasy (ENSPEMG00000012437) #18	Mlx (ENSPEMG00000015965) #19	Psmc3ip (ENSPEMG00000017694) #20	Retreg3 (ENSPEMG00000013772) #21	Tubg1 (ENSPEMG00000027277) #22	Tubg2 (ENSPEMG00000026832) #23	Plekhh3 (ENSPEMG00000011634) #24	Ccr10 (ENSPEMG00000012066) #25	Cntnap1 (ENSPEMG00000011417) #26	Ezh1 (ENSPEMG00000003694) #27	Ramp2 (ENSPEMG00000017016) #28	Vps25 (ENSPEMG00000011669) #29	Wnk4 (ENSPEMG00000011882) #30	Coa3 (ENSPEMG00000019006) #31	Cntd1 (ENSPEMG00000007328) #32	ENSPEMG00000027472	Psme3 (ENSPEMG00000013099) #34	Aoc2 (ENSPEMG00000018257) #35	Aoc3 (ENSPEMG00000012019) #36	G6pc (ENSPEMG00000025140) #37
Prairie vole	MODERN SPECIES	127	ENSMOCG00000018531	Kcnh4 (ENSMOCG00000005108) #7	Hcrt (ENSMOCG00000005402) #8	Ghdc (ENSMOCG00000020439) #9	Stat5b (ENSMOCG00000011875) #10	Stat5a (ENSMOCG00000000170) #11	Stat3 (ENSMOCG00000011223) #13	Cavin1 (ENSMOCG00000008907) #14	Atp6v0a1 (ENSMOCG00000003199) #15	Naglu (ENSMOCG00000004738) #16	Hsd17b1 (ENSMOCG00000021088) #17	Coasy (ENSMOCG00000012906) #18	Mlx (ENSMOCG00000018860) #19	Psmc3ip (ENSMOCG00000017934) #20	Retreg3 (ENSMOCG00000000335) #21	Tubg1 (ENSMOCG00000018346) #22	Tubg2 (ENSMOCG00000002587) #23	Plekhh3 (ENSMOCG00000006637) #24	Ccr10 (ENSMOCG00000009310) #25	Cntnap1 (ENSMOCG00000006883) #26	Ezh1 (ENSMOCG00000021032) #27	Ramp2 (ENSMOCG00000014445) #28	Vps25 (ENSMOCG00000018897) #29	Wnk4 (ENSMOCG00000016124) #30	ENSMOCG00000021678 #31	Cntd1 (ENSMOCG00000007350) #32	Becn1 (ENSMOCG00000010684) #33	ENSMOCG00000002970 #34	Aoc2 (ENSMOCG00000018362) #35	Aoc3 (ENSMOCG00000016609) #36	G6pc (ENSMOCG00000002126) #37
Murinae	ANCESTRAL SPECIES	6	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Mus	ANCESTRAL SPECIES	2	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Mus_C	ANCESTRAL SPECIES	21	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
spretus	MODERN SPECIES	2	Rab5c (MGP_SPRETEiJ_G0018027)	Kcnh4 (MGP_SPRETEiJ_G0018028) #7	Hcrt (MGP_SPRETEiJ_G0018029) #8	Ghdc (MGP_SPRETEiJ_G0018030) #9	Stat5b (MGP_SPRETEiJ_G0018031) #10	MGP_SPRETEiJ_G0018032 #11	Stat3 (MGP_SPRETEiJ_G0018033) #13	Cavin1 (MGP_SPRETEiJ_G0018034) #14	Atp6v0a1 (MGP_SPRETEiJ_G0018035) #15	Naglu (MGP_SPRETEiJ_G0018036) #16	Hsd17b1 (MGP_SPRETEiJ_G0018037) #17	Coasy (MGP_SPRETEiJ_G0018038) #18	Mlx (MGP_SPRETEiJ_G0018039) #19	Psmc3ip (MGP_SPRETEiJ_G0018040) #20	Retreg3 (MGP_SPRETEiJ_G0018041) #21	MGP_SPRETEiJ_G0018042 #22	MGP_SPRETEiJ_G0018043 #23	Plekhh3 (MGP_SPRETEiJ_G0018044) #24	Cntnap1 (MGP_SPRETEiJ_G0018045) #26	Ccr10 (MGP_SPRETEiJ_G0018046) #25	Ezh1 (MGP_SPRETEiJ_G0018047) #27	Ramp2 (MGP_SPRETEiJ_G0018048) #28	Vps25 (MGP_SPRETEiJ_G0018049) #29	Wnk4 (MGP_SPRETEiJ_G0018050) #30	Coa3 (MGP_SPRETEiJ_G0018051) #31	Cntd1 (MGP_SPRETEiJ_G0018052) #32	Becn1 (MGP_SPRETEiJ_G0018053) #33	Psme3 (MGP_SPRETEiJ_G0018054) #34	Aoc2 (MGP_SPRETEiJ_G0018055) #35	Aoc3 (MGP_SPRETEiJ_G0018056) #36	G6pc (MGP_SPRETEiJ_G0018057) #37
Mouse	MODERN SPECIES	2	Rab5c (ENSMUSG00000019173)	Kcnh4 (ENSMUSG00000035355) #7	Hcrt (ENSMUSG00000045471) #8	Ghdc (ENSMUSG00000017747) #9	Stat5b (ENSMUSG00000020919) #10	Stat5a (ENSMUSG00000004043) #11	Stat3 (ENSMUSG00000004040) #13	Cavin1 (ENSMUSG00000004044) #14	Atp6v0a1 (ENSMUSG00000019302) #15	Naglu (ENSMUSG00000001751) #16	Hsd17b1 (ENSMUSG00000019301) #17	Coasy (ENSMUSG00000001755) #18	Mlx (ENSMUSG00000017801) #19	Psmc3ip (ENSMUSG00000019303) #20	Retreg3 (ENSMUSG00000017802) #21	Tubg1 (ENSMUSG00000035198) #22	Tubg2 (ENSMUSG00000045007) #23	Plekhh3 (ENSMUSG00000035172) #24	Cntnap1 (ENSMUSG00000017167) #26	Ccr10 (ENSMUSG00000044052) #25	Ezh1 (ENSMUSG00000006920) #27	Ramp2 (ENSMUSG00000001240) #28	Vps25 (ENSMUSG00000078656) #29	Wnk4 (ENSMUSG00000035112) #30	Coa3 (ENSMUSG00000017188) #31	Cntd1 (ENSMUSG00000078653) #32	Becn1 (ENSMUSG00000035086) #33	Psme3 (ENSMUSG00000078652) #34	Aoc2 (ENSMUSG00000078651) #35	Aoc3 (ENSMUSG00000019326) #36	G6pc (ENSMUSG00000078650) #37
Ryukyu mouse	MODERN SPECIES	2	Rab5c (MGP_CAROLIEiJ_G0017184)	Kcnh4 (MGP_CAROLIEiJ_G0017185) #7	Hcrt (MGP_CAROLIEiJ_G0017186) #8	Ghdc (MGP_CAROLIEiJ_G0017187) #9	Stat5b (MGP_CAROLIEiJ_G0017188) #10	Stat5a (MGP_CAROLIEiJ_G0017189) #11	Stat3 (MGP_CAROLIEiJ_G0017190) #13	Cavin1 (MGP_CAROLIEiJ_G0017191) #14	Atp6v0a1 (MGP_CAROLIEiJ_G0017192) #15	Naglu (MGP_CAROLIEiJ_G0017193) #16	Hsd17b1 (MGP_CAROLIEiJ_G0017194) #17	Coasy (MGP_CAROLIEiJ_G0017195) #18	Mlx (MGP_CAROLIEiJ_G0017196) #19	Psmc3ip (MGP_CAROLIEiJ_G0017197) #20	Retreg3 (MGP_CAROLIEiJ_G0017198) #21	Tubg1 (MGP_CAROLIEiJ_G0017199) #22	Tubg2 (MGP_CAROLIEiJ_G0017200) #23	Plekhh3 (MGP_CAROLIEiJ_G0017201) #24	Cntnap1 (MGP_CAROLIEiJ_G0017202) #26	Ccr10 (MGP_CAROLIEiJ_G0017203) #25	Ezh1 (MGP_CAROLIEiJ_G0017204) #27	Ramp2 (MGP_CAROLIEiJ_G0017205) #28	Vps25 (MGP_CAROLIEiJ_G0017206) #29	Wnk4 (MGP_CAROLIEiJ_G0017207) #30	Coa3 (MGP_CAROLIEiJ_G0017208) #31	Cntd1 (MGP_CAROLIEiJ_G0017209) #32	Becn1 (MGP_CAROLIEiJ_G0017210) #33	Psme3 (MGP_CAROLIEiJ_G0017211) #34	Aoc2 (MGP_CAROLIEiJ_G0017212) #35	Aoc3 (MGP_CAROLIEiJ_G0017213) #36	G6pc (MGP_CAROLIEiJ_G0017214) #37
Shrew mouse	MODERN SPECIES	5	Rab5c (MGP_PahariEiJ_G0018314)	Kcnh4 (MGP_PahariEiJ_G0018315) #7	Hcrt (MGP_PahariEiJ_G0018316) #8	Ghdc (MGP_PahariEiJ_G0018317) #9	Stat5b (MGP_PahariEiJ_G0018318) #10	MGP_PahariEiJ_G0018319 #11	Stat3 (MGP_PahariEiJ_G0018320) #13	Cavin1 (MGP_PahariEiJ_G0018321) #14	Atp6v0a1 (MGP_PahariEiJ_G0018322) #15	Naglu (MGP_PahariEiJ_G0018323) #16	Hsd17b1 (MGP_PahariEiJ_G0018324) #17	Coasy (MGP_PahariEiJ_G0018325) #18	MGP_PahariEiJ_G0018326 #19	Psmc3ip (MGP_PahariEiJ_G0018327) #20	Retreg3 (MGP_PahariEiJ_G0018328) #21	Tubg1 (MGP_PahariEiJ_G0018329) #22	Tubg2 (MGP_PahariEiJ_G0018330) #23	Plekhh3 (MGP_PahariEiJ_G0018331) #24	Cntnap1 (MGP_PahariEiJ_G0018332) #26	Ccr10 (MGP_PahariEiJ_G0018333) #25	Ezh1 (MGP_PahariEiJ_G0018334) #27	Ramp2 (MGP_PahariEiJ_G0018335) #28	Vps25 (MGP_PahariEiJ_G0018336) #29	Wnk4 (MGP_PahariEiJ_G0018337) #30	Coa3 (MGP_PahariEiJ_G0018338) #31	Cntd1 (MGP_PahariEiJ_G0018339) #32	Becn1 (MGP_PahariEiJ_G0018340) #33	Psme3 (MGP_PahariEiJ_G0018341) #34	Aoc2 (MGP_PahariEiJ_G0018342) #35	Aoc3 (MGP_PahariEiJ_G0018343) #36	G6pc (MGP_PahariEiJ_G0018344) #37
Rat	MODERN SPECIES	1	Rab5c (ENSRNOG00000018568)	Kcnh4 (ENSRNOG00000018790) #7	Hcrt (ENSRNOG00000018892) #8	Ghdc (ENSRNOG00000018906) #9	Stat5b (ENSRNOG00000019075) #10	Stat5a (ENSRNOG00000019496) #11	Stat3 (ENSRNOG00000019742) #13	Cavin1 (ENSRNOG00000019778) #14	Atp6v0a1 (ENSRNOG00000036814) #15	Naglu (ENSRNOG00000032381) #16	Hsd17b1 (ENSRNOG00000019830) #17	Coasy (ENSRNOG00000019918) #18	Mlx (ENSRNOG00000019983) #19	Psmc3ip (ENSRNOG00000020022) #20	Retreg3 (ENSRNOG00000020056) #21	Tubg1 (ENSRNOG00000020213) #22	Tubg2 (ENSRNOG00000006494) #23	Plekhh3 (ENSRNOG00000020238) #24	Ccr10 (ENSRNOG00000020275) #25	Cntnap1 (ENSRNOG00000020277) #26	Ezh1 (ENSRNOG00000020336) #27	Vps25 (ENSRNOG00000020441) #30	Atp5mk-ps2 (ENSRNOG00000067471)	Coa3 (ENSRNOG00000020487) #31	Becn1 (ENSRNOG00000020513) #33	G6pc1 (ENSRNOG00000053448) #36	Aarsd1 (ENSRNOG00000020658)	Ptges3l (ENSRNOG00000050347)	Rundc1 (ENSRNOG00000023768)	Rpl27 (ENSRNOG00000020674)	Ifi35 (ENSRNOG00000020678)
Upper Galilee mountains blind mole rat	MODERN SPECIES	912	Kcnh4 (ENSNGAG00000012447) #7	Hcrt (ENSNGAG00000017222) #8	Ghdc (ENSNGAG00000019995) #9	Stat5b (ENSNGAG00000008411) #10	ENSNGAG00000016189	Stat5a (ENSNGAG00000017098) #11	Stat3 (ENSNGAG00000002384) #13	Cavin1 (ENSNGAG00000016373) #14	Atp6v0a1 (ENSNGAG00000019015) #15	Naglu (ENSNGAG00000001778) #16	Hsd17b1 (ENSNGAG00000011336) #17	Coasy (ENSNGAG00000011553) #18	Mlx (ENSNGAG00000011307) #19	Psmc3ip (ENSNGAG00000014927) #20	Retreg3 (ENSNGAG00000014675) #21	Tubg1 (ENSNGAG00000014805) #22	Tubg2 (ENSNGAG00000004427) #23	Plekhh3 (ENSNGAG00000020821) #24	Ccr10 (ENSNGAG00000020372) #25	Cntnap1 (ENSNGAG00000009133) #26	Ezh1 (ENSNGAG00000012173) #27	Ramp2 (ENSNGAG00000016874) #28	Vps25 (ENSNGAG00000015305) #29	Wnk4 (ENSNGAG00000013456) #30	Coa3 (ENSNGAG00000011157) #31	Cntd1 (ENSNGAG00000013614) #32	Becn1 (ENSNGAG00000002226) #33	Psme3 (ENSNGAG00000005238) #34	Aoc2 (ENSNGAG00000019887) #35	Aoc3 (ENSNGAG00000012544) #36	G6pc (ENSNGAG00000000379) #37
Lesser Egyptian jerboa	MODERN SPECIES	56	Rab5c (ENSJJAG00000021181)	Kcnh4 (ENSJJAG00000021495) #7	Hcrt (ENSJJAG00000021837) #8	Ghdc (ENSJJAG00000023539) #9	Stat5b (ENSJJAG00000021714) #10	Stat5a (ENSJJAG00000020911) #11	Stat3 (ENSJJAG00000023580) #13	Cavin1 (ENSJJAG00000020868) #14	Atp6v0a1 (ENSJJAG00000023112) #15	Naglu (ENSJJAG00000020839) #16	Hsd17b1 (ENSJJAG00000020824) #17	Coasy (ENSJJAG00000021057) #18	Mlx (ENSJJAG00000021305) #19	ENSJJAG00000021293 #20	Retreg3 (ENSJJAG00000021144) #21	Tubg1 (ENSJJAG00000020643) #22	Tubg2 (ENSJJAG00000022182) #23	Plekhh3 (ENSJJAG00000021329) #24	Ccr10 (ENSJJAG00000021031) #25	Cntnap1 (ENSJJAG00000003810) #26	Ezh1 (ENSJJAG00000020580) #27	ENSJJAG00000021892 #28	Vps25 (ENSJJAG00000001505) #29	Wnk4 (ENSJJAG00000021799) #30	Coa3 (ENSJJAG00000020968) #31	Cntd1 (ENSJJAG00000019888) #32	Becn1 (ENSJJAG00000021753) #33	ENSJJAG00000020691 #34	Aoc2 (ENSJJAG00000020667) #35	Aoc3 (ENSJJAG00000018905) #36	G6pc (ENSJJAG00000019877) #37
Kangaroo rat	MODERN SPECIES	326	Kcnh4 (ENSDORG00000002370) #7	Hcrt (ENSDORG00000027929) #8	ENSDORG00000002375	ENSDORG00000002376 #11	Stat5a (ENSDORG00000000303) #11	Stat3 (ENSDORG00000000308) #13	Cavin1 (ENSDORG00000024770) #14	ENSDORG00000028466 ##15	Atp6v0a1 (ENSDORG00000013402) #15	Naglu (ENSDORG00000006547) #16	Hsd17b1 (ENSDORG00000006544) #17	Coasy (ENSDORG00000006542) #18	Mlx (ENSDORG00000006540) #19	Psmc3ip (ENSDORG00000006537) #20	Retreg3 (ENSDORG00000006535) #21	Tubg1 (ENSDORG00000006534) #22	Plekhh3 (ENSDORG00000016401) #24	Ccr10 (ENSDORG00000016402) #25	Cntnap1 (ENSDORG00000016403) #26	Ezh1 (ENSDORG00000016404) #27	ENSDORG00000027443 #28	ENSDORG00000000950 #29	Wnk4 (ENSDORG00000000951) #30	Coa3 (ENSDORG00000000953) #31	Cntd1 (ENSDORG00000000954) #32	Becn1 (ENSDORG00000000956) #33	Psme3 (ENSDORG00000000958) #34	Aoc3 (ENSDORG00000000961) #36	G6pc (ENSDORG00000014392) #37
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00900000143602	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00510000049735	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.b.c ##11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a.k #34	ENSGT00950000183207.b.e.k #36	ENSGT00950000183150.a.a #37	ENSGT00940000156241
Naked mole-rat female	MODERN SPECIES	12	DHX58 (ENSHGLG00000011529)	KAT2A (ENSHGLG00000014215)	ENSHGLG00000032125	ENSHGLG00000046408	KCNH4 (ENSHGLG00000011673) #7	ENSHGLG00000037543 #9	ENSHGLG00000012522 ##11	STAT3 (ENSHGLG00000010906) #13	CAVIN1 (ENSHGLG00000018343) #14	ATP6V0A1 (ENSHGLG00000018815) #15	NAGLU (ENSHGLG00000011489) #16	COASY (ENSHGLG00000012414) #18	MLX (ENSHGLG00000014995) #19	ENSHGLG00000013066 #20	RETREG3 (ENSHGLG00000011981) #21	TUBG1 (ENSHGLG00000012574) #22	TUBG2 (ENSHGLG00000011925) #23	PLEKHH3 (ENSHGLG00000035935) #24	CCR10 (ENSHGLG00000011006) #25	CNTNAP1 (ENSHGLG00000018356) #26	ENSHGLG00000010367 #27	RAMP2 (ENSHGLG00000040881) #28	VPS25 (ENSHGLG00000018591) #29	WNK4 (ENSHGLG00000014338) #30	COA3 (ENSHGLG00000031975) #31	CNTD1 (ENSHGLG00000037081) #32	BECN1 (ENSHGLG00000017981) #33	PSME3 (ENSHGLG00000013508) #34	AOC3 (ENSHGLG00000010734) #36	ENSHGLG00000037349 #36	G6PC1 (ENSHGLG00000009732) #37
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.b.c ##11	ENSGT01080000257420.C.b.b.b.d ##11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a.k #34	ENSGT00950000183207.b.e.k #36	ENSGT00950000183150.a.a #37	ENSGT00940000156241
Guinea pig	MODERN SPECIES	53	HSPB9 (ENSCPOG00000026480)	RAB5C (ENSCPOG00000011190)	KCNH4 (ENSCPOG00000027074) #7	HCRT (ENSCPOG00000040052) #8	ENSCPOG00000026466 ##11	ENSCPOG00000012203 ##11	STAT3 (ENSCPOG00000007939) #13	CAVIN1 (ENSCPOG00000036454) #14	ATP6V0A1 (ENSCPOG00000011417) #15	NAGLU (ENSCPOG00000010613) #16	HSD17B1 (ENSCPOG00000021970) #17	COASY (ENSCPOG00000006117) #18	MLX (ENSCPOG00000035377) #19	PSMC3IP (ENSCPOG00000022571) #20	RETREG3 (ENSCPOG00000002844) #21	TUBG1 (ENSCPOG00000033099) #22	TUBG2 (ENSCPOG00000008842) #23	PLEKHH3 (ENSCPOG00000010080) #24	CCR10 (ENSCPOG00000008847) #25	CNTNAP1 (ENSCPOG00000008851) #26	EZH1 (ENSCPOG00000012533) #27	RAMP2 (ENSCPOG00000034336) #28	VPS25 (ENSCPOG00000012538) #29	WNK4 (ENSCPOG00000035356) #30	COA3 (ENSCPOG00000022659) #31	CNTD1 (ENSCPOG00000012545) #32	BECN1 (ENSCPOG00000012547) #33	PSME3 (ENSCPOG00000012552) #34	AOC3 (ENSCPOG00000012559) #36	G6PC1 (ENSCPOG00000013409) #37	AARSD1 (ENSCPOG00000030193)
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.b.c ##11	ENSGT01080000257420.C.b.b.b.d ##11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a.k #34	ENSGT00950000183207.b.e.k #36	ENSGT00950000183150.a.a #37	ENSGT00940000156241
Long-tailed chinchilla	MODERN SPECIES	158	RAB5C (ENSCLAG00000016650)	KCNH4 (ENSCLAG00000016815) #7	HCRT (ENSCLAG00000016694) #8	GHDC (ENSCLAG00000015892) #9	ENSCLAG00000016318 ##11	ENSCLAG00000016243 ##11	STAT3 (ENSCLAG00000014721) #13	CAVIN1 (ENSCLAG00000016470) #14	ATP6V0A1 (ENSCLAG00000016413) #15	NAGLU (ENSCLAG00000016699) #16	HSD17B1 (ENSCLAG00000016130) #17	COASY (ENSCLAG00000016171) #18	MLX (ENSCLAG00000017140) #19	PSMC3IP (ENSCLAG00000015875) #20	RETREG3 (ENSCLAG00000016186) #21	TUBG1 (ENSCLAG00000015846) #22	PLEKHH3 (ENSCLAG00000015237) #24	CCR10 (ENSCLAG00000014760) #25	CNTNAP1 (ENSCLAG00000014690) #26	EZH1 (ENSCLAG00000016299) #27	RAMP2 (ENSCLAG00000015276) #28	VPS25 (ENSCLAG00000016527) #29	WNK4 (ENSCLAG00000016166) #30	COA3 (ENSCLAG00000015591) #31	CNTD1 (ENSCLAG00000016092) #32	BECN1 (ENSCLAG00000014888) #33	PSME3 (ENSCLAG00000016528) #34	AOC3 (ENSCLAG00000016573) #36	G6PC1 (ENSCLAG00000016018) #37	ENSCLAG00000018072	AARSD1 (ENSCLAG00000016486)
Degu	MODERN SPECIES	97	RAB5C (ENSODEG00000017920)	KCNH4 (ENSODEG00000018039) #7	HCRT (ENSODEG00000017993) #8	GHDC (ENSODEG00000017948) #9	ENSODEG00000018000 ##11	ENSODEG00000018044 ##11	ENSODEG00000017971 #13	CAVIN1 (ENSODEG00000017991) #14	ATP6V0A1 (ENSODEG00000017959) #15	NAGLU (ENSODEG00000017945) #16	HSD17B1 (ENSODEG00000018063) #17	COASY (ENSODEG00000018042) #18	MLX (ENSODEG00000017951) #19	PSMC3IP (ENSODEG00000017995) #20	RETREG3 (ENSODEG00000018095) #21	TUBG1 (ENSODEG00000018022) #22	TUBG2 (ENSODEG00000018001) #23	PLEKHH3 (ENSODEG00000018103) #24	CCR10 (ENSODEG00000017981) #25	CNTNAP1 (ENSODEG00000018056) #26	ENSODEG00000017986 #27	RAMP2 (ENSODEG00000017963) #28	VPS25 (ENSODEG00000018342) #29	WNK4 (ENSODEG00000018004) #30	COA3 (ENSODEG00000018075) #31	CNTD1 (ENSODEG00000018061) #32	BECN1 (ENSODEG00000017992) #33	ENSODEG00000018174 #34	AOC3 (ENSODEG00000018014) #36	G6PC1 (ENSODEG00000017978) #37	AARSD1 (ENSODEG00000018082)
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00900000143602	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36
Eurasian red squirrel	MODERN SPECIES	12	ENSSVLG00005000284	KCNH4 (ENSSVLG00005000254) #7	HCRT (ENSSVLG00005000222) #8	GHDC (ENSSVLG00005000199) #9	STAT5B (ENSSVLG00005004598) #10	STAT5A (ENSSVLG00005004549) #11	STAT3 (ENSSVLG00005004451) #13	CAVIN1 (ENSSVLG00005004409) #14	ATP6V0A1 (ENSSVLG00005004340) #15	ENSSVLG00005004269 #16	HSD17B1 (ENSSVLG00005004237) #17	COASY (ENSSVLG00005004216) #18	MLX (ENSSVLG00005004171) #19	PSMC3IP (ENSSVLG00005004134) #20	RETREG3 (ENSSVLG00005004111) #21	TUBG1 (ENSSVLG00005004092) #22	TUBG2 (ENSSVLG00005004078) #23	PLEKHH3 (ENSSVLG00005004060) #24	CCR10 (ENSSVLG00005004046) #25	CNTNAP1 (ENSSVLG00005004025) #26	EZH1 (ENSSVLG00005003960) #27	RAMP2 (ENSSVLG00005003908) #28	VPS25 (ENSSVLG00005003880) #29	WNK4 (ENSSVLG00005003835) #30	COA3 (ENSSVLG00005003810) #31	CNTD1 (ENSSVLG00005003791) #32	BECN1 (ENSSVLG00005003759) #33	ENSSVLG00005003672 #34	AOC2 (ENSSVLG00005003596) #35	ENSSVLG00005003490 #36	ENSSVLG00005003399 #36
Marmotini	ANCESTRAL SPECIES	8	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00900000143602	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.i.a #36
Alpin marmot	MODERN SPECIES	42	RAB5C (ENSMMMG00000006088)	KCNH4 (ENSMMMG00000006041) #7	HCRT (ENSMMMG00000006029) #8	GHDC (ENSMMMG00000006013) #9	STAT5B (ENSMMMG00000005973) #10	STAT5A (ENSMMMG00000005892) #11	STAT3 (ENSMMMG00000005779) #13	CAVIN1 (ENSMMMG00000005775) #14	ATP6V0A1 (ENSMMMG00000005552) #15	NAGLU (ENSMMMG00000005528) #16	HSD17B1 (ENSMMMG00000005512) #17	COASY (ENSMMMG00000005496) #18	MLX (ENSMMMG00000005464) #19	PSMC3IP (ENSMMMG00000005444) #20	RETREG3 (ENSMMMG00000005418) #21	TUBG1 (ENSMMMG00000005405) #22	TUBG2 (ENSMMMG00000005392) #23	PLEKHH3 (ENSMMMG00000005351) #24	CCR10 (ENSMMMG00000005331) #25	ENSMMMG00000005324	CNTNAP1 (ENSMMMG00000005268) #26	EZH1 (ENSMMMG00000005196) #27	ENSMMMG00000005184 #28	VPS25 (ENSMMMG00000005115) #29	WNK4 (ENSMMMG00000005066) #30	COA3 (ENSMMMG00000005055) #31	CNTD1 (ENSMMMG00000005038) #32	BECN1 (ENSMMMG00000004985) #33	PSME3 (ENSMMMG00000004954) #34	AOC2 (ENSMMMG00000004937) #35	ENSMMMG00000004904 #36
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.j #36	ENSGT00950000183150.a.a #37	ENSGT00940000156241.e.a
Arctic ground squirrel	DUPLICATION
Arctic ground squirrel	MODERN SPECIES	46	KCNH4 (ENSUPAG00010009543) #7	HCRT (ENSUPAG00010009569) #8	GHDC (ENSUPAG00010009572) #9	ENSUPAG00010009583 #10	ENSUPAG00010009596 #10	STAT5A (ENSUPAG00010009605) #11	STAT3 (ENSUPAG00010009648) #13	CAVIN1 (ENSUPAG00010009709) #14	ATP6V0A1 (ENSUPAG00010009720) #15	NAGLU (ENSUPAG00010009802) #16	HSD17B1 (ENSUPAG00010009808) #17	COASY (ENSUPAG00010009813) #18	MLX (ENSUPAG00010009827) #19	PSMC3IP (ENSUPAG00010009849) #20	RETREG3 (ENSUPAG00010009853) #21	TUBG1 (ENSUPAG00010009862) #22	ENSUPAG00010009880 #22	PLEKHH3 (ENSUPAG00010009888) #24	CNTNAP1 (ENSUPAG00010009924) #26	CCR10 (ENSUPAG00010009957) #25	EZH1 (ENSUPAG00010009961) #27	RAMP2 (ENSUPAG00010010079) #28	VPS25 (ENSUPAG00010010087) #29	WNK4 (ENSUPAG00010010115) #30	COA3 (ENSUPAG00010010147) #31	CNTD1 (ENSUPAG00010010156) #32	BECN1 (ENSUPAG00010010164) #33	PSME3 (ENSUPAG00010010193) #34	AOC2 (ENSUPAG00010010206) #35	AOC3 (ENSUPAG00010010214) #36	G6PC1 (ENSUPAG00010010230) #37
Arctic ground squirrel	MODERN SPECIES	46	HCRT (ENSUPAG00010009569) #8	GHDC (ENSUPAG00010009572) #9	ENSUPAG00010009583 #10	ENSUPAG00010009596 #10	STAT5A (ENSUPAG00010009605) #11	STAT3 (ENSUPAG00010009648) #13	CAVIN1 (ENSUPAG00010009709) #14	ATP6V0A1 (ENSUPAG00010009720) #15	NAGLU (ENSUPAG00010009802) #16	HSD17B1 (ENSUPAG00010009808) #17	COASY (ENSUPAG00010009813) #18	MLX (ENSUPAG00010009827) #19	PSMC3IP (ENSUPAG00010009849) #20	RETREG3 (ENSUPAG00010009853) #21	TUBG1 (ENSUPAG00010009862) #22	ENSUPAG00010009880 #22	PLEKHH3 (ENSUPAG00010009888) #24	CNTNAP1 (ENSUPAG00010009924) #26	CCR10 (ENSUPAG00010009957) #25	EZH1 (ENSUPAG00010009961) #27	RAMP2 (ENSUPAG00010010079) #28	VPS25 (ENSUPAG00010010087) #29	WNK4 (ENSUPAG00010010115) #30	COA3 (ENSUPAG00010010147) #31	CNTD1 (ENSUPAG00010010156) #32	BECN1 (ENSUPAG00010010164) #33	PSME3 (ENSUPAG00010010193) #34	AOC2 (ENSUPAG00010010206) #35	AOC3 (ENSUPAG00010010214) #36	G6PC1 (ENSUPAG00010010230) #37	AARSD1 (ENSUPAG00010010235)
Laurasiatheria	ANCESTRAL SPECIES	4	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Eulipotyphla	ANCESTRAL SPECIES	11					ENSGT01080000257420.C.b.b.b ##11	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22
Common shrew	MODERN SPECIES	4377												COASY (ENSSARG00000014153) #18	MLX (ENSSARG00000014166) #19	PSMC3IP (ENSSARG00000014179) #20	RETREG3 (ENSSARG00000014186) #21	TUBG1 (ENSSARG00000014189) #22
Laurasiatheria_a	ANCESTRAL SPECIES	4	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00390000006359	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36
Laurasiatheria_b	ANCESTRAL SPECIES	4	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00390000006359	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36
Laurasiatheria_c	ANCESTRAL SPECIES	3	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00390000006359	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36
Chiroptera	ANCESTRAL SPECIES	2	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00390000006359	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36
Microchiroptera	ANCESTRAL SPECIES		ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Microbat	MODERN SPECIES	1037	RAB5C (ENSMLUG00000012028)	KCNH4 (ENSMLUG00000012036) #7	HCRT (ENSMLUG00000014840) #8	GHDC (ENSMLUG00000014841) #9	STAT5B (ENSMLUG00000012050) #10	STAT5A (ENSMLUG00000026308) #11	STAT3 (ENSMLUG00000017449) #13	CAVIN1 (ENSMLUG00000025515) #14	ATP6V0A1 (ENSMLUG00000016640) #15	NAGLU (ENSMLUG00000027344) #16	HSD17B1 (ENSMLUG00000001029) #17	COASY (ENSMLUG00000016660) #18	MLX (ENSMLUG00000016670) #19	PSMC3IP (ENSMLUG00000016683) #20	RETREG3 (ENSMLUG00000001002) #21	TUBG1 (ENSMLUG00000016694) #22	TUBG2 (ENSMLUG00000007817) #23	PLEKHH3 (ENSMLUG00000007840) #24	CCR10 (ENSMLUG00000024590) #25	CNTNAP1 (ENSMLUG00000004037) #26	EZH1 (ENSMLUG00000004048) #27	RAMP2 (ENSMLUG00000024598) #28	COA3 (ENSMLUG00000004072) #31	WNK4 (ENSMLUG00000004064) #30	BECN1 (ENSMLUG00000004077) #33	PSME3 (ENSMLUG00000004084) #34	AOC2 (ENSMLUG00000004091) #35	ENSMLUG00000004099 #36	ENSMLUG00000004104 #36	G6PC1 (ENSMLUG00000004107) #37	AARSD1 (ENSMLUG00000024369)
Greater horseshoe bat	MODERN SPECIES	13	KCNH4 (ENSRFEG00010007566) #7	HCRT (ENSRFEG00010007598) #8	GHDC (ENSRFEG00010007635) #9	STAT5B (ENSRFEG00010007739) #10	STAT5A (ENSRFEG00010007816) #11	STAT3 (ENSRFEG00010007961) #13	CAVIN1 (ENSRFEG00010008079) #14	ATP6V0A1 (ENSRFEG00010008159) #15	ENSRFEG00010008373	NAGLU (ENSRFEG00010008448) #16	HSD17B1 (ENSRFEG00010008541) #17	COASY (ENSRFEG00010008611) #18	MLX (ENSRFEG00010008731) #19	PSMC3IP (ENSRFEG00010008820) #20	RETREG3 (ENSRFEG00010008876) #21	TUBG1 (ENSRFEG00010009005) #22	PLEKHH3 (ENSRFEG00010009248) #24	CCR10 (ENSRFEG00010009309) #25	CNTNAP1 (ENSRFEG00010009359) #26	EZH1 (ENSRFEG00010009456) #27	RAMP2 (ENSRFEG00010009607) #28	ENSRFEG00010009695 #29	WNK4 (ENSRFEG00010009730) #30	COA3 (ENSRFEG00010009767) #31	CNTD1 (ENSRFEG00010009799) #32	BECN1 (ENSRFEG00010009915) #33	PSME3 (ENSRFEG00010010112) #34	AOC2 (ENSRFEG00010010759) #35	AOC3 (ENSRFEG00010010898) #36	G6PC1 (ENSRFEG00010010983) #37	AARSD1 (ENSRFEG00010011044)
Megabat	MODERN SPECIES	357									ATP6V0A1 (ENSPVAG00000016552) #15	NAGLU (ENSPVAG00000016553) #16	HSD17B1 (ENSPVAG00000016554) #17	COASY (ENSPVAG00000016555) #18	MLX (ENSPVAG00000016556) #19	PSMC3IP (ENSPVAG00000016557) #20	RETREG3 (ENSPVAG00000016558) #21	TUBG1 (ENSPVAG00000016559) #22	TUBG2 (ENSPVAG00000016560) #23	PLEKHH3 (ENSPVAG00000016561) #24
Equus	ANCESTRAL SPECIES		ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.bb #36	ENSGT00950000183207.b.e.cb #36
Donkey	MODERN SPECIES	4	RAB5C (ENSEASG00005032868)	KCNH4 (ENSEASG00005009291) #7	HCRT (ENSEASG00005009317) #8	GHDC (ENSEASG00005009320) #9	STAT5B (ENSEASG00005009440) #10	STAT5A (ENSEASG00005009957) #11	STAT3 (ENSEASG00005009961) #13	CAVIN1 (ENSEASG00005035749) #14	ATP6V0A1 (ENSEASG00005009965) #15	NAGLU (ENSEASG00005009968) #16	HSD17B1 (ENSEASG00005009974) #17	COASY (ENSEASG00005009980) #18	MLX (ENSEASG00005009988) #19	PSMC3IP (ENSEASG00005009999) #20	RETREG3 (ENSEASG00005026869) #21	TUBG1 (ENSEASG00005010016) #22	TUBG2 (ENSEASG00005010014) #23	PLEKHH3 (ENSEASG00005010019) #24	CCR10 (ENSEASG00005037671) #25	CNTNAP1 (ENSEASG00005010025) #26	EZH1 (ENSEASG00005010032) #27	ENSEASG00005010035 #28	ENSEASG00005028779 #29	VPS25 (ENSEASG00005026490) #29	WNK4 (ENSEASG00005010042) #30	ENSEASG00005010046 #31	CNTD1 (ENSEASG00005010048) #32	BECN1 (ENSEASG00005010049) #33	PSME3 (ENSEASG00005027152) #34	AOC2 (ENSEASG00005010052) #35	ENSEASG00005023655 #36
Horse	DUPLICATION
Horse	MODERN SPECIES	2	ZNF385C (ENSECAG00000016402)	HSPB9 (ENSECAG00000048612)	RAB5C (ENSECAG00000025054)	KCNH4 (ENSECAG00000024953) #7	HCRT (ENSECAG00000001687) #8	GHDC (ENSECAG00000024665) #9	STAT5B (ENSECAG00000007847) #10	STAT5A (ENSECAG00000012328) #11	STAT3 (ENSECAG00000016439) #13	CAVIN1 (ENSECAG00000015071) #14	ATP6V0A1 (ENSECAG00000016326) #15	HSD17B1 (ENSECAG00000011423) #17	COASY (ENSECAG00000008468) #18	MLX (ENSECAG00000023980) #19	PSMC3IP (ENSECAG00000022323) #20	TUBG1 (ENSECAG00000027735) #22	RETREG3 (ENSECAG00000020676) #21	TUBG2 (ENSECAG00000037184) #22	PLEKHH3 (ENSECAG00000010506) #24	CCR10 (ENSECAG00000038719) #25	CNTNAP1 (ENSECAG00000024128) #26	EZH1 (ENSECAG00000008605) #27	RAMP2 (ENSECAG00000007412) #28	VPS25 (ENSECAG00000026807) #29	WNK4 (ENSECAG00000023887) #30	ENSECAG00000052196 #31	CNTD1 (ENSECAG00000026900) #32	BECN1 (ENSECAG00000018079) #33	AOC2 (ENSECAG00000011604) #35	ENSECAG00000008739 #36	G6PC1 (ENSECAG00000000509) #36
Horse	MODERN SPECIES	2	RAB5C (ENSECAG00000025054)	KCNH4 (ENSECAG00000024953) #7	HCRT (ENSECAG00000001687) #8	GHDC (ENSECAG00000024665) #9	STAT5B (ENSECAG00000007847) #10	STAT5A (ENSECAG00000012328) #11	STAT3 (ENSECAG00000016439) #13	CAVIN1 (ENSECAG00000015071) #14	ATP6V0A1 (ENSECAG00000016326) #15	HSD17B1 (ENSECAG00000011423) #17	COASY (ENSECAG00000008468) #18	MLX (ENSECAG00000023980) #19	PSMC3IP (ENSECAG00000022323) #20	TUBG1 (ENSECAG00000027735) #22	RETREG3 (ENSECAG00000020676) #21	TUBG2 (ENSECAG00000037184) #22	PLEKHH3 (ENSECAG00000010506) #24	CCR10 (ENSECAG00000038719) #25	CNTNAP1 (ENSECAG00000024128) #26	EZH1 (ENSECAG00000008605) #27	RAMP2 (ENSECAG00000007412) #28	VPS25 (ENSECAG00000026807) #29	WNK4 (ENSECAG00000023887) #30	ENSECAG00000052196 #31	CNTD1 (ENSECAG00000026900) #32	BECN1 (ENSECAG00000018079) #33	AOC2 (ENSECAG00000011604) #35	ENSECAG00000008739 #36	G6PC1 (ENSECAG00000000509) #36	AARSD1 (ENSECAG00000009275)	PTGES3L (ENSECAG00000041923)
Carnivora	ANCESTRAL SPECIES	9	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Caniformia	ANCESTRAL SPECIES	6	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Canidae	ANCESTRAL SPECIES	2	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000162499 #23	ENSGT00940000154818.a.a	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.w #36	ENSGT00950000183207.b.e.x #36	ENSGT00950000183150.a.a #37
Red fox	MODERN SPECIES	241	KCNH4 (ENSVVUG00000021151) #7	HCRT (ENSVVUG00000021153) #8	GHDC (ENSVVUG00000021157) #9	STAT5B (ENSVVUG00000021246) #10	STAT5A (ENSVVUG00000023740) #11	STAT3 (ENSVVUG00000023746) #13	CAVIN1 (ENSVVUG00000023758) #14	ATP6V0A1 (ENSVVUG00000023762) #15	HSD17B1 (ENSVVUG00000023776) #17	COASY (ENSVVUG00000023777) #18	MLX (ENSVVUG00000023782) #19	PSMC3IP (ENSVVUG00000023787) #20	RETREG3 (ENSVVUG00000023799) #21	TUBG1 (ENSVVUG00000023803) #23	ENSVVUG00000023821	ENSVVUG00000023822 #22	PLEKHH3 (ENSVVUG00000023826) #24	CCR10 (ENSVVUG00000023842) #25	CNTNAP1 (ENSVVUG00000023844) #26	EZH1 (ENSVVUG00000023851) #27	RAMP2 (ENSVVUG00000023856) #28	VPS25 (ENSVVUG00000023858) #29	WNK4 (ENSVVUG00000023871) #30	COA3 (ENSVVUG00000023882) #31	CNTD1 (ENSVVUG00000023884) #32	BECN1 (ENSVVUG00000023885) #33	PSME3 (ENSVVUG00000023894) #34	AOC2 (ENSVVUG00000023930) #35	AOC3 (ENSVVUG00000023933) #36	ENSVVUG00000023935 #36	G6PC (ENSVVUG00000023937) #37
Canis_lupus	ANCESTRAL SPECIES	3	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000154818.a.a	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262.a #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.w #36
Dog	MODERN SPECIES	37	RAB5C (ENSCAFG00845010240)	KCNH4 (ENSCAFG00845010157) #7	HCRT (ENSCAFG00845010112) #8	GHDC (ENSCAFG00845010077) #9	STAT5B (ENSCAFG00845009970) #10	STAT5A (ENSCAFG00845009709) #11	STAT3 (ENSCAFG00845009322) #13	CAVIN1 (ENSCAFG00845009233) #14	ATP6V0A1 (ENSCAFG00845008916) #15	NAGLU (ENSCAFG00845008828) #16	HSD17B1 (ENSCAFG00845008784) #17	COASY (ENSCAFG00845008704) #18	ENSCAFG00845008619 #19	PSMC3IP (ENSCAFG00845008560) #20	RETREG3 (ENSCAFG00845008519) #21	TUBG1 (ENSCAFG00845008443) #22	ENSCAFG00845008414	TUBG1 (ENSCAFG00845008386) #23	PLEKHH3 (ENSCAFG00845008338) #24	CCR10 (ENSCAFG00845008299) #25	CNTNAP1 (ENSCAFG00845008178) #26	EZH1 (ENSCAFG00845007935) #27	RAMP2 (ENSCAFG00845007816) #28	VPS25 (ENSCAFG00845007769) #29	WNK4 (ENSCAFG00845007685) #30	CCDC56 (ENSCAFG00845007643) #31	PSME3 (ENSCAFG00845007621) #32	BECN1 (ENSCAFG00845007505) #33	PSME3 (ENSCAFG00845007222) #34	AOC2 (ENSCAFG00845006922) #35	ENSCAFG00845006860 #36
Dingo	DUPLICATION
Dingo	MODERN SPECIES	150	HCRT (ENSCAFG00020013518) #8	GHDC (ENSCAFG00020013509) #9	STAT5B (ENSCAFG00020013496) #10	STAT5A (ENSCAFG00020013492) #11	STAT3 (ENSCAFG00020013489) #13	CAVIN1 (ENSCAFG00020013488) #14	ATP6V0A1 (ENSCAFG00020013479) #15	NAGLU (ENSCAFG00020013472) #16	HSD17B1 (ENSCAFG00020013468) #17	COASY (ENSCAFG00020013466) #18	MLX (ENSCAFG00020013445) #19	PSMC3IP (ENSCAFG00020013432) #20	RETREG3 (ENSCAFG00020013430) #21	ENSCAFG00020013165 #22	ENSCAFG00020013161	TUBG1 (ENSCAFG00020013158) #22	PLEKHH3 (ENSCAFG00020013156) #24	CCR10 (ENSCAFG00020013155) #25	CNTNAP1 (ENSCAFG00020013130) #26	EZH1 (ENSCAFG00020013112) #27	ENSCAFG00020013109 #28	VPS25 (ENSCAFG00020013078) #29	WNK4 (ENSCAFG00020013064) #30	ENSCAFG00020013061 #31	CNTD1 (ENSCAFG00020013052) #32	BECN1 (ENSCAFG00020013047) #33	PSME3 (ENSCAFG00020013044) #34	AOC2 (ENSCAFG00020013038) #35	AOC3 (ENSCAFG00020013032) #36	G6PC1 (ENSCAFG00020013023) #37	AARSD1 (ENSCAFG00020013016)
Dingo	MODERN SPECIES	150	RAB5C (ENSCAFG00020013537)	KCNH4 (ENSCAFG00020013526) #7	HCRT (ENSCAFG00020013518) #8	GHDC (ENSCAFG00020013509) #9	STAT5B (ENSCAFG00020013496) #10	STAT5A (ENSCAFG00020013492) #11	STAT3 (ENSCAFG00020013489) #13	CAVIN1 (ENSCAFG00020013488) #14	ATP6V0A1 (ENSCAFG00020013479) #15	NAGLU (ENSCAFG00020013472) #16	HSD17B1 (ENSCAFG00020013468) #17	COASY (ENSCAFG00020013466) #18	MLX (ENSCAFG00020013445) #19	PSMC3IP (ENSCAFG00020013432) #20	RETREG3 (ENSCAFG00020013430) #21	ENSCAFG00020013165 #22	ENSCAFG00020013161	TUBG1 (ENSCAFG00020013158) #22	PLEKHH3 (ENSCAFG00020013156) #24	CCR10 (ENSCAFG00020013155) #25	CNTNAP1 (ENSCAFG00020013130) #26	EZH1 (ENSCAFG00020013112) #27	ENSCAFG00020013109 #28	VPS25 (ENSCAFG00020013078) #29	WNK4 (ENSCAFG00020013064) #30	ENSCAFG00020013061 #31	CNTD1 (ENSCAFG00020013052) #32	BECN1 (ENSCAFG00020013047) #33	PSME3 (ENSCAFG00020013044) #34	AOC2 (ENSCAFG00020013038) #35	AOC3 (ENSCAFG00020013032) #36
Caniformia_b	ANCESTRAL SPECIES	20	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Mustelinae	ANCESTRAL SPECIES	1	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.u #36	ENSGT00950000183150.a.a #37
American mink	MODERN SPECIES	354	RAB5C (ENSNVIG00000012201)	ENSNVIG00000012231	KCNH4 (ENSNVIG00000012241) #7	HCRT (ENSNVIG00000012285) #8	GHDC (ENSNVIG00000012292) #9	STAT5B (ENSNVIG00000012318) #10	STAT5A (ENSNVIG00000012373) #11	STAT3 (ENSNVIG00000012502) #13	CAVIN1 (ENSNVIG00000012584) #14	ATP6V0A1 (ENSNVIG00000012603) #15	NAGLU (ENSNVIG00000012894) #16	ENSNVIG00000012908 #17	COASY (ENSNVIG00000012953) #18	PSMC3IP (ENSNVIG00000013036) #20	RETREG3 (ENSNVIG00000013070) #21	TUBG1 (ENSNVIG00000013082) #22	TUBG2 (ENSNVIG00000013103) #23	PLEKHH3 (ENSNVIG00000013123) #24	CCR10 (ENSNVIG00000013159) #25	CNTNAP1 (ENSNVIG00000013167) #26	EZH1 (ENSNVIG00000013268) #27	RAMP2 (ENSNVIG00000013365) #28	VPS25 (ENSNVIG00000013385) #29	WNK4 (ENSNVIG00000013400) #30	COA3 (ENSNVIG00000013432) #31	CNTD1 (ENSNVIG00000013440) #32	BECN1 (ENSNVIG00000013470) #33	PSME3 (ENSNVIG00000013505) #34	AOC2 (ENSNVIG00000013601) #35	AOC3 (ENSNVIG00000013625) #36	G6PC1 (ENSNVIG00000013659) #37
Ursidae	ANCESTRAL SPECIES	19	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890.d #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.s #36	ENSGT00950000183207.b.e.t #36	ENSGT00950000183150.a.a #37
Giant Panda	MODERN SPECIES	4	KCNH4 (ENSAMEG00000006011) #7	HCRT (ENSAMEG00000027318) #8	GHDC (ENSAMEG00000006041) #9	STAT5B (ENSAMEG00000006061) #10	ENSAMEG00000023775 #11	ENSAMEG00000006086 #11	STAT3 (ENSAMEG00000006266) #13	CAVIN1 (ENSAMEG00000026089) #14	ATP6V0A1 (ENSAMEG00000006373) #15	NAGLU (ENSAMEG00000006505) #16	HSD17B1 (ENSAMEG00000006514) #17	COASY (ENSAMEG00000006530) #18	MLX (ENSAMEG00000006549) #19	PSMC3IP (ENSAMEG00000006571) #20	RETREG3 (ENSAMEG00000006592) #21	TUBG2 (ENSAMEG00000029160) #22	PLEKHH3 (ENSAMEG00000024345) #24	CCR10 (ENSAMEG00000006670) #25	CNTNAP1 (ENSAMEG00000006676) #26	EZH1 (ENSAMEG00000006766) #27	RAMP2 (ENSAMEG00000006821) #28	VPS25 (ENSAMEG00000028167) #29	WNK4 (ENSAMEG00000006833) #30	ENSAMEG00000006865 #31	CNTD1 (ENSAMEG00000029702) #32	BECN1 (ENSAMEG00000006867) #33	PSME3 (ENSAMEG00000030967) #34	AOC2 (ENSAMEG00000026573) #35	ENSAMEG00000006944 #36	ENSAMEG00000028162 #36	G6PC (ENSAMEG00000024422) #37
Ursus	ANCESTRAL SPECIES	79	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890.d #20	ENSGT00940000161349 #21	ENSGT00940000162499 #23	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.s #36	ENSGT00950000183207.b.e.t #36	ENSGT00950000183150.a.a #37
American black bear	MODERN SPECIES	796							CAVIN1 (ENSUAMG00000007322) #14	ATP6V0A1 (ENSUAMG00000007326) #15	NAGLU (ENSUAMG00000007333) #16	HSD17B1 (ENSUAMG00000007335) #17	COASY (ENSUAMG00000007339) #18	MLX (ENSUAMG00000007343) #19	PSMC3IP (ENSUAMG00000007345) #20	RETREG3 (ENSUAMG00000007350) #21	TUBG2 (ENSUAMG00000007351) #23	TUBG1 (ENSUAMG00000007353) #22	PLEKHH3 (ENSUAMG00000007359) #24	CCR10 (ENSUAMG00000007361) #25	CNTNAP1 (ENSUAMG00000007363) #26	EZH1 (ENSUAMG00000007364) #27
Felidae	ANCESTRAL SPECIES	8	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.y #36	ENSGT00950000183207.b.e.z #36
Cat	MODERN SPECIES	245	KAT2A (ENSFCAG00000002146)	RAB5C (ENSFCAG00000002148)	KCNH4 (ENSFCAG00000002149) #7	GHDC (ENSFCAG00000002151) #9	STAT5B (ENSFCAG00000028112) #10	STAT5A (ENSFCAG00000002153) #11	STAT3 (ENSFCAG00000002154) #13	CAVIN1 (ENSFCAG00000043195) #14	ATP6V0A1 (ENSFCAG00000011658) #15	NAGLU (ENSFCAG00000011661) #16	HSD17B1 (ENSFCAG00000011663) #17	COASY (ENSFCAG00000033182) #18	MLX (ENSFCAG00000011667) #19	PSMC3IP (ENSFCAG00000011669) #20	RETREG3 (ENSFCAG00000011672) #21	TUBG1 (ENSFCAG00000031036) #22	PLEKHH3 (ENSFCAG00000011682) #24	CCR10 (ENSFCAG00000042553) #25	CNTNAP1 (ENSFCAG00000013129) #26	EZH1 (ENSFCAG00000013131) #27	RAMP2 (ENSFCAG00000009203) #28	VPS25 (ENSFCAG00000036322) #29	WNK4 (ENSFCAG00000026039) #30	COA3 (ENSFCAG00000013134) #31	CNTD1 (ENSFCAG00000034560) #32	BECN1 (ENSFCAG00000013136) #33	PSME3 (ENSFCAG00000013130) #34	AOC2 (ENSFCAG00000033935) #35	ENSFCAG00000025774 #36	ENSFCAG00000013138 #36	G6PC1 (ENSFCAG00000036883) #37
Panthera	ANCESTRAL SPECIES	42	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.y #36	ENSGT00950000183207.b.e.z #36
Panthera_a	ANCESTRAL SPECIES	13	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.y #36	ENSGT00950000183207.b.e.z #36
lion	MODERN SPECIES	14	RAB5C (ENSPLOG00000006779)	KCNH4 (ENSPLOG00000006814) #7	HCRT (ENSPLOG00000006873) #8	GHDC (ENSPLOG00000006895) #9	STAT5B (ENSPLOG00000006948) #10	STAT5A (ENSPLOG00000007031) #11	STAT3 (ENSPLOG00000007071) #13	CAVIN1 (ENSPLOG00000007125) #14	ATP6V0A1 (ENSPLOG00000007189) #15	NAGLU (ENSPLOG00000007269) #16	HSD17B1 (ENSPLOG00000007308) #17	COASY (ENSPLOG00000007342) #18	MLX (ENSPLOG00000007383) #19	PSMC3IP (ENSPLOG00000007422) #20	RETREG3 (ENSPLOG00000007498) #21	TUBG1 (ENSPLOG00000007531) #22	TUBG2 (ENSPLOG00000007571) #23	PLEKHH3 (ENSPLOG00000007622) #24	CCR10 (ENSPLOG00000007715) #25	CNTNAP1 (ENSPLOG00000007752) #26	EZH1 (ENSPLOG00000007923) #27	RAMP2 (ENSPLOG00000007987) #28	VPS25 (ENSPLOG00000008019) #29	WNK4 (ENSPLOG00000008212) #30	COA3 (ENSPLOG00000008329) #31	CNTD1 (ENSPLOG00000008363) #32	BECN1 (ENSPLOG00000008451) #33	PSME3 (ENSPLOG00000008573) #34	ARL4D (ENSPLOG00000008959)	DHX8 (ENSPLOG00000008992)	ETV4 (ENSPLOG00000009101)
leopard	MODERN SPECIES	177	KCNH4 (ENSPPRG00000005969) #7	ENSPPRG00000006867 #8	ENSPPRG00000007024 #8	GHDC (ENSPPRG00000007129) #9	STAT5B (ENSPPRG00000008075) #10	STAT5A (ENSPPRG00000010705) #11	STAT3 (ENSPPRG00000011309) #13	CAVIN1 (ENSPPRG00000011717) #14	ATP6V0A1 (ENSPPRG00000014481) #15	NAGLU (ENSPPRG00000014798) #16	HSD17B1 (ENSPPRG00000015435) #17	COASY (ENSPPRG00000016662) #18	MLX (ENSPPRG00000018438) #19	PSMC3IP (ENSPPRG00000019573) #20	RETREG3 (ENSPPRG00000021888) #21	TUBG1 (ENSPPRG00000000111) #22	TUBG2 (ENSPPRG00000000291) #23	PLEKHH3 (ENSPPRG00000000939) #24	CCR10 (ENSPPRG00000001107) #25	CNTNAP1 (ENSPPRG00000003989) #26	EZH1 (ENSPPRG00000006279) #27	RAMP2 (ENSPPRG00000006488) #28	VPS25 (ENSPPRG00000006995) #29	WNK4 (ENSPPRG00000007524) #30	COA3 (ENSPPRG00000007814) #31	CNTD1 (ENSPPRG00000008099) #32	BECN1 (ENSPPRG00000008498) #33	PSME3 (ENSPPRG00000009714) #34	AOC2 (ENSPPRG00000010462) #35	ENSPPRG00000011276 #36	ENSPPRG00000012507 #36
Tiger	MODERN SPECIES	268	HSPB9 (ENSPTIG00000009844)	RAB5C (ENSPTIG00000008177)	KCNH4 (ENSPTIG00000008368) #7	GHDC (ENSPTIG00000008470) #9	STAT5B (ENSPTIG00000008621) #10	STAT5A (ENSPTIG00000008753) #11	STAT3 (ENSPTIG00000008816) #13	ENSPTIG00000009471 #14	ATP6V0A1 (ENSPTIG00000009577) #15	NAGLU (ENSPTIG00000010067) #16	ENSPTIG00000010104 #17	COASY (ENSPTIG00000010123) #18	MLX (ENSPTIG00000010375) #19	PSMC3IP (ENSPTIG00000010448) #20	RETREG3 (ENSPTIG00000010488) #21	TUBG1 (ENSPTIG00000010621) #22	TUBG2 (ENSPTIG00000010772) #23	CCR10 (ENSPTIG00000011098) #25	CNTNAP1 (ENSPTIG00000011410) #26	EZH1 (ENSPTIG00000011506) #27	RAMP2 (ENSPTIG00000011780) #28	VPS25 (ENSPTIG00000011784) #29	WNK4 (ENSPTIG00000011860) #30	COA3 (ENSPTIG00000011990) #31	CNTD1 (ENSPTIG00000012031) #32	BECN1 (ENSPTIG00000012052) #33	PSME3 (ENSPTIG00000012451) #34	AOC2 (ENSPTIG00000012543) #35	ENSPTIG00000012595 #36	ENSPTIG00000012647 #36	G6PC1 (ENSPTIG00000012928) #37
Artiodactyla	ANCESTRAL SPECIES	4	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00390000006359	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36
Suina	ANCESTRAL SPECIES		ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Pig	MODERN SPECIES	3	HSPB9 (ENSSSCG00000017413)	RAB5C (ENSSSCG00000032467)	KCNH4 (ENSSSCG00000017411) #7	HCRT (ENSSSCG00000017410) #8	GHDC (ENSSSCG00000017407) #9	STAT5B (ENSSSCG00000017406) #10	STAT5A (ENSSSCG00000017402) #11	STAT3 (ENSSSCG00000017403) #13	CAVIN1 (ENSSSCG00000035446) #14	ATP6V0A1 (ENSSSCG00000017401) #15	NAGLU (ENSSSCG00000046466) #16	HSD17B1 (ENSSSCG00000035147) #17	COASY (ENSSSCG00000017398) #18	MLX (ENSSSCG00000017397) #19	PSMC3IP (ENSSSCG00000017396) #20	TUBG1 (ENSSSCG00000036106) #22	RETREG3 (ENSSSCG00000017395) #21	TUBG2 (ENSSSCG00000059397) #23	PLEKHH3 (ENSSSCG00000017391) #24	CCR10 (ENSSSCG00000017392) #25	CNTNAP1 (ENSSSCG00000017393) #26	EZH1 (ENSSSCG00000017382) #27	RAMP2 (ENSSSCG00000017389) #28	VPS25 (ENSSSCG00000034782) #29	WNK4 (ENSSSCG00000060121) #30	COA3 (ENSSSCG00000057849) #31	CNTD1 (ENSSSCG00000040866) #32	BECN1 (ENSSSCG00000017386) #33	PSME3 (ENSSSCG00000017385) #34	AOC2 (ENSSSCG00000017384) #35	ENSSSCG00000037487 #36
Artiodactyla_a	ANCESTRAL SPECIES	3	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00390000006359	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36
Camelidae	ANCESTRAL SPECIES	62	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37	ENSGT00940000156241	ENSGT00940000163448
Arabian camel	MODERN SPECIES	7	RAB5C (ENSCDRG00005005039)	KCNH4 (ENSCDRG00005005095) #7	HCRT (ENSCDRG00005005115) #8	GHDC (ENSCDRG00005005131) #9	STAT5B (ENSCDRG00005005157) #10	STAT5A (ENSCDRG00005005218) #11	STAT3 (ENSCDRG00005005349) #13	CAVIN1 (ENSCDRG00005005412) #14	ATP6V0A1 (ENSCDRG00005005448) #15	NAGLU (ENSCDRG00005005587) #16	HSD17B1 (ENSCDRG00005005614) #17	COASY (ENSCDRG00005005644) #18	MLX (ENSCDRG00005005697) #19	PSMC3IP (ENSCDRG00005005763) #20	RETREG3 (ENSCDRG00005005794) #21	TUBG1 (ENSCDRG00005005832) #22	PLEKHH3 (ENSCDRG00005005924) #24	CNTNAP1 (ENSCDRG00005006112) #26	EZH1 (ENSCDRG00005006165) #27	RAMP2 (ENSCDRG00005006289) #28	VPS25 (ENSCDRG00005006372) #29	WNK4 (ENSCDRG00005006646) #30	COA3 (ENSCDRG00005009390) #31	CNTD1 (ENSCDRG00005009443) #32	BECN1 (ENSCDRG00005009558) #33	ENSCDRG00005009703 #34	AOC2 (ENSCDRG00005010275) #35	AOC3 (ENSCDRG00005010395) #36	G6PC1 (ENSCDRG00005010533) #37	AARSD1 (ENSCDRG00005010624)	PTGES3L (ENSCDRG00005010839)
Alpaca	MODERN SPECIES	3492													MLX (ENSVPAG00000010327) #19	PSMC3IP (ENSVPAG00000010328) #20	RETREG3 (ENSVPAG00000010329) #21	TUBG1 (ENSVPAG00000010330) #22
Artiodactyla_b	ANCESTRAL SPECIES	3	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00390000006359	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.q.a #36
Pecora	ANCESTRAL SPECIES	1	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c.b #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.q.a #36	ENSGT00950000183207.b.e.q.b #36
Percora_a	ANCESTRAL SPECIES	2	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c.b #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.q.a.a.a #36	ENSGT00950000183207.b.e.q.a.b #36
Bovidae	ANCESTRAL SPECIES	2	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c.b #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.q.a.a.a #36	ENSGT00950000183207.b.e.q.a.a.b #36
Caprinae	ANCESTRAL SPECIES	1	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262.e #31	ENSGT00440000033966 #32	ENSGT00390000008164.c.b #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.q.a.a.a #36	ENSGT00950000183207.b.e.q.a.a.b #36
Goat	MODERN SPECIES	10	KCNH4 (ENSCHIG00000004460) #7	HCRT (ENSCHIG00000025119) #8	GHDC (ENSCHIG00000008301) #9	STAT5B (ENSCHIG00000021723) #10	STAT5A (ENSCHIG00000022084) #11	STAT3 (ENSCHIG00000020307) #13	CAVIN1 (ENSCHIG00000021967) #14	ENSCHIG00000010030	ATP6V0A1 (ENSCHIG00000023886) #15	NAGLU (ENSCHIG00000025669) #16	HSD17B1 (ENSCHIG00000024608) #17	COASY (ENSCHIG00000015825) #18	MLX (ENSCHIG00000008566) #19	PSMC3IP (ENSCHIG00000016634) #20	RETREG3 (ENSCHIG00000021347) #21	TUBG1 (ENSCHIG00000023630) #22	TUBG2 (ENSCHIG00000017871) #23	PLEKHH3 (ENSCHIG00000009375) #24	CCR10 (ENSCHIG00000006150) #25	CNTNAP1 (ENSCHIG00000021718) #26	EZH1 (ENSCHIG00000021460) #27	RAMP2 (ENSCHIG00000009603) #28	VPS25 (ENSCHIG00000015624) #29	WNK4 (ENSCHIG00000020630) #30	ENSCHIG00000017406 #31	CNTD1 (ENSCHIG00000027036) #32	ENSCHIG00000021542 #33	PSME3 (ENSCHIG00000007996) #34	AOC2 (ENSCHIG00000013407) #35	ENSCHIG00000006644 #36	ENSCHIG00000022166 #36
Rambouillet Sheep	MODERN SPECIES	2	RAB5C (ENSOARG00020003131)	KCNH4 (ENSOARG00020003088) #7	HCRT (ENSOARG00020003058) #8	GHDC (ENSOARG00020024276) #9	STAT5B (ENSOARG00020024144) #10	STAT5A (ENSOARG00020024057) #11	STAT3 (ENSOARG00020023991) #13	CAVIN1 (ENSOARG00020023973) #14	ATP6V0A1 (ENSOARG00020023829) #15	NAGLU (ENSOARG00020023775) #16	HSD17B1 (ENSOARG00020023741) #17	COASY (ENSOARG00020023711) #18	MLX (ENSOARG00020023627) #19	PSMC3IP (ENSOARG00020023582) #20	RETREG3 (ENSOARG00020023536) #21	TUBG1 (ENSOARG00020023516) #22	TUBG2 (ENSOARG00020023495) #23	PLEKHH3 (ENSOARG00020023384) #24	CCR10 (ENSOARG00020023357) #25	CNTNAP1 (ENSOARG00020023130) #26	EZH1 (ENSOARG00020023003) #27	RAMP2 (ENSOARG00020022922) #28	VPS25 (ENSOARG00020022861) #29	WNK4 (ENSOARG00020022783) #30	ENSOARG00020022706 #31	CNTD1 (ENSOARG00020022636) #32	BECN1 (ENSOARG00020022575) #33	PSME3 (ENSOARG00020022334) #34	AOC2 (ENSOARG00020022287) #35	ENSOARG00020022200 #36	ENSOARG00020021890 #36
Bovinae	ANCESTRAL SPECIES		ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c.b #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.q.a.a.a #36	ENSGT00950000183207.b.e.q.a.a.b #36
Bos	ANCESTRAL SPECIES	1	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871.c #30	ENSGT00940000159871.d #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c.b #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.q.a.a.a #36
Bos_b	ANCESTRAL SPECIES	21	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00940000154726.cb	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871.c #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c.b #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.q.a.a.a #36	ENSGT00950000183207.b.e.q.a.b #36
Cow	MODERN SPECIES	10	KCNH4 (ENSBTAG00000001195) #7	HCRT (ENSBTAG00000000665) #8	GHDC (ENSBTAG00000000666) #9	STAT5B (ENSBTAG00000010125) #10	STAT5A (ENSBTAG00000009496) #11	STAT3 (ENSBTAG00000021523) #13	CAVIN1 (ENSBTAG00000039684) #14	ENSBTAG00000053969	ATP6V0A1 (ENSBTAG00000019218) #15	NAGLU (ENSBTAG00000047956) #16	HSD17B1 (ENSBTAG00000047604) #17	COASY (ENSBTAG00000046746) #18	MLX (ENSBTAG00000046670) #19	PSMC3IP (ENSBTAG00000020907) #20	RETREG3 (ENSBTAG00000032493) #21	TUBG1 (ENSBTAG00000048152) #22	TUBG2 (ENSBTAG00000030347) #23	PLEKHH3 (ENSBTAG00000019090) #24	CCR10 (ENSBTAG00000019095) #25	CNTNAP1 (ENSBTAG00000019097) #26	EZH1 (ENSBTAG00000021918) #27	RAMP2 (ENSBTAG00000019903) #28	VPS25 (ENSBTAG00000019906) #29	WNK4 (ENSBTAG00000019907) #30	COA3 (ENSBTAG00000019911) #31	CNTD1 (ENSBTAG00000019912) #32	BECN1 (ENSBTAG00000019914) #33	PSME3 (ENSBTAG00000019918) #34	AOC2 (ENSBTAG00000030334) #35	AOC3 (ENSBTAG00000030333) #36	SAO (ENSBTAG00000039321) #36
Hybrid Bos Indicus	MODERN SPECIES	10	KCNH4 (ENSBIXG00005031508) #7	HCRT (ENSBIXG00005031511) #8	GHDC (ENSBIXG00005029238) #9	STAT5B (ENSBIXG00005005263) #10	STAT5A (ENSBIXG00005001732) #11	STAT3 (ENSBIXG00005005192) #13	CAVIN1 (ENSBIXG00005005162) #14	ENSBIXG00005029091	ATP6V0A1 (ENSBIXG00005001971) #15	NAGLU (ENSBIXG00005028986) #16	HSD17B1 (ENSBIXG00005002112) #17	COASY (ENSBIXG00005028966) #18	MLX (ENSBIXG00005002178) #19	PSMC3IP (ENSBIXG00005028905) #20	RETREG3 (ENSBIXG00005028878) #21	TUBG1 (ENSBIXG00005002316) #22	TUBG2 (ENSBIXG00005028818) #23	PLEKHH3 (ENSBIXG00005028775) #24	CCR10 (ENSBIXG00005028708) #25	CNTNAP1 (ENSBIXG00005028679) #26	EZH1 (ENSBIXG00005028643) #27	ENSBIXG00005004901 #29	WNK4 (ENSBIXG00005004891) #30	COA3 (ENSBIXG00005006632) #31	CNTD1 (ENSBIXG00005028357) #32	BECN1 (ENSBIXG00005028310) #33	AOC3 (ENSBIXG00005006978) #36	PSME3 (ENSBIXG00005028112) #34	G6PC1 (ENSBIXG00005028063) #37	ENSBIXG00005028047	AARSD1 (ENSBIXG00005028036)
Bos_a	ANCESTRAL SPECIES		ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871.c #30	ENSGT00940000159871.d #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c.b #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.q.a.a.a #36
Wild yak	MODERN SPECIES	1070	RAB5C (ENSBMUG00000016674)	KCNH4 (ENSBMUG00000016638) #7	HCRT (ENSBMUG00000016604) #8	GHDC (ENSBMUG00000016589) #9	STAT5B (ENSBMUG00000016559) #10	STAT5A (ENSBMUG00000016535) #11	STAT3 (ENSBMUG00000016404) #13	CAVIN1 (ENSBMUG00000016260) #14	ATP6V0A1 (ENSBMUG00000016111) #15	NAGLU (ENSBMUG00000015830) #16	HSD17B1 (ENSBMUG00000015816) #17	COASY (ENSBMUG00000015802) #18	MLX (ENSBMUG00000015772) #19	PSMC3IP (ENSBMUG00000015726) #20	RETREG3 (ENSBMUG00000015711) #21	TUBG1 (ENSBMUG00000015682) #22	TUBG2 (ENSBMUG00000015667) #23	PLEKHH3 (ENSBMUG00000015646) #24	CCR10 (ENSBMUG00000015623) #25	CNTNAP1 (ENSBMUG00000015606) #26	EZH1 (ENSBMUG00000015578) #27	RAMP2 (ENSBMUG00000015457) #28	VPS25 (ENSBMUG00000015412) #29	ENSBMUG00000015390 #30
American bison	MODERN SPECIES	3101	KCNH4 (ENSBBBG00000010701) #7	HCRT (ENSBBBG00000010709) #8	GHDC (ENSBBBG00000010720) #9	STAT5B (ENSBBBG00000010796) #10	STAT5A (ENSBBBG00000010980) #11	STAT3 (ENSBBBG00000011063) #13	ENSBBBG00000001989 #14	ENSBBBG00000006763	ATP6V0A1 (ENSBBBG00000008542) #15	NAGLU (ENSBBBG00000011090) #16	HSD17B1 (ENSBBBG00000011096) #17	COASY (ENSBBBG00000011101) #18	MLX (ENSBBBG00000002005) #19	PSMC3IP (ENSBBBG00000011137) #20	RETREG3 (ENSBBBG00000011145) #21	TUBG1 (ENSBBBG00000011157) #22	TUBG2 (ENSBBBG00000011183) #23	CCR10 (ENSBBBG00000011187) #25	CNTNAP1 (ENSBBBG00000002032) #26	EZH1 (ENSBBBG00000002031) #27	RAMP2 (ENSBBBG00000011328) #28	VPS25 (ENSBBBG00000011356) #29	WNK4 (ENSBBBG00000011371) #30	COA3 (ENSBBBG00000011374) #31	CNTD1 (ENSBBBG00000002078) #32	BECN1 (ENSBBBG00000011400) #33	PSME3 (ENSBBBG00000011526) #34	AOC2 (ENSBBBG00000002115) #35	ENSBBBG00000011564 #36	ENSBBBG00000011571 #36	ENSBBBG00000011659 #36
Siberian musk deer	MODERN SPECIES	1210	RAB5C (ENSMMSG00000015528)	KCNH4 (ENSMMSG00000015579) #7	HCRT (ENSMMSG00000015619) #8	GHDC (ENSMMSG00000015628) #9	STAT5B (ENSMMSG00000015678) #10	STAT5A (ENSMMSG00000015758) #11	STAT3 (ENSMMSG00000015883) #13	CAVIN1 (ENSMMSG00000015980) #14	ATP6V0A1 (ENSMMSG00000016103) #15	NAGLU (ENSMMSG00000016250) #16	HSD17B1 (ENSMMSG00000016275) #17	COASY (ENSMMSG00000016320) #18	MLX (ENSMMSG00000016399) #19	PSMC3IP (ENSMMSG00000016490) #20	RETREG3 (ENSMMSG00000016554) #21	TUBG1 (ENSMMSG00000016607) #22	TUBG2 (ENSMMSG00000016649) #23	PLEKHH3 (ENSMMSG00000016702) #24	CCR10 (ENSMMSG00000016758) #25	CNTNAP1 (ENSMMSG00000016812) #26	EZH1 (ENSMMSG00000016924) #27	RAMP2 (ENSMMSG00000017100) #28	VPS25 (ENSMMSG00000017149) #29	WNK4 (ENSMMSG00000017208) #30	ENSMMSG00000017247 #31	CNTD1 (ENSMMSG00000017264) #32	ENSMMSG00000017324 #33	ENSMMSG00000017360	PSME3 (ENSMMSG00000017401) #34	AOC2 (ENSMMSG00000017693) #35	ENSMMSG00000017743 #36
Cetacea	ANCESTRAL SPECIES	5	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00390000006359	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.r #36
Blue whale	MODERN SPECIES	12	KCNH4 (ENSBMSG00010019384) #7	HCRT (ENSBMSG00010019430) #8	GHDC (ENSBMSG00010019438) #9	STAT5B (ENSBMSG00010019463) #10	STAT5A (ENSBMSG00010019534) #11	STAT3 (ENSBMSG00010019642) #13	CAVIN1 (ENSBMSG00010019685) #14	ATP6V0A1 (ENSBMSG00010019699) #15	ENSBMSG00010019733	NAGLU (ENSBMSG00010019746) #16	HSD17B1 (ENSBMSG00010019767) #17	COASY (ENSBMSG00010019788) #18	MLX (ENSBMSG00010019816) #19	PSMC3IP (ENSBMSG00010019863) #20	RETREG3 (ENSBMSG00010019877) #21	TUBG1 (ENSBMSG00010019892) #22	TUBG2 (ENSBMSG00010019913) #23	PLEKHH3 (ENSBMSG00010019937) #24	CCR10 (ENSBMSG00010020019) #25	CNTNAP1 (ENSBMSG00010020039) #26	EZH1 (ENSBMSG00010020069) #27	RAMP2 (ENSBMSG00010020096) #28	VPS25 (ENSBMSG00010020131) #29	WNK4 (ENSBMSG00010020148) #30	COA3 (ENSBMSG00010020173) #31	CNTD1 (ENSBMSG00010020189) #32	BECN1 (ENSBMSG00010020223) #33	ENSBMSG00010020293 #34	AOC2 (ENSBMSG00010020418) #35	ENSBMSG00010020442 #36	ENSBMSG00010020479 #36
Odontoceti	ANCESTRAL SPECIES	16	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00390000006359	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.r #36
Odontoceti_a	ANCESTRAL SPECIES	14	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00390000006359	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.r #36
Odontoceti_b	ANCESTRAL SPECIES	16	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00390000015789.d.b.a.b	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e.r #36
Monodontidae	ANCESTRAL SPECIES	16	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b.b #10	ENSGT00940000165581	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00940000164458	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00390000015789.d.b.a.b	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183150.a.a #37	ENSGT00940000156241
Beluga whale	MODERN SPECIES	26	HCRT (ENSDLEG00000009165) #8	GHDC (ENSDLEG00000009124) #9	STAT5B (ENSDLEG00000009053) #10	ENSDLEG00000009029	STAT5A (ENSDLEG00000008920) #11	STAT3 (ENSDLEG00000008866) #13	CAVIN1 (ENSDLEG00000008839) #14	ENSDLEG00000008738	ATP6V0A1 (ENSDLEG00000008539) #15	NAGLU (ENSDLEG00000008492) #16	HSD17B1 (ENSDLEG00000008474) #17	COASY (ENSDLEG00000008450) #18	MLX (ENSDLEG00000017760) #19	PSMC3IP (ENSDLEG00000017649) #20	RETREG3 (ENSDLEG00000017608) #21	TUBG1 (ENSDLEG00000017452) #22	TUBG2 (ENSDLEG00000017379) #23	PLEKHH3 (ENSDLEG00000017343) #24	CCR10 (ENSDLEG00000017336) #25	CNTNAP1 (ENSDLEG00000017225) #26	EZH1 (ENSDLEG00000017160) #27	ENSDLEG00000017144	RAMP2 (ENSDLEG00000017131) #28	VPS25 (ENSDLEG00000017054) #29	WNK4 (ENSDLEG00000016953) #30	COA3 (ENSDLEG00000016939) #31	CNTD1 (ENSDLEG00000016928) #32	BECN1 (ENSDLEG00000016887) #33	PSME3 (ENSDLEG00000016851) #34	AOC2 (ENSDLEG00000016830) #35	AOC3 (ENSDLEG00000016813) #36
Narwhal	MODERN SPECIES	316	HCRT (ENSMMNG00015018304) #8	GHDC (ENSMMNG00015018320) #9	ENSMMNG00015018346 #10	ENSMMNG00015018372 #10	ENSMMNG00015018391	ENSMMNG00015018416 #11	STAT3 (ENSMMNG00015018456) #13	CAVIN1 (ENSMMNG00015018508) #14	ENSMMNG00015018524	ATP6V0A1 (ENSMMNG00015018592) #15	NAGLU (ENSMMNG00015018763) #16	COASY (ENSMMNG00015018830) #18	MLX (ENSMMNG00015018905) #19	PSMC3IP (ENSMMNG00015018975) #20	RETREG3 (ENSMMNG00015019095) #21	TUBG1 (ENSMMNG00015019140) #22	TUBG2 (ENSMMNG00015019177) #23	PLEKHH3 (ENSMMNG00015019203) #24	CCR10 (ENSMMNG00015019235) #25	CNTNAP1 (ENSMMNG00015019278) #26	EZH1 (ENSMMNG00015019325) #27	ENSMMNG00015019403	RAMP2 (ENSMMNG00015019428) #28	VPS25 (ENSMMNG00015019458) #29	WNK4 (ENSMMNG00015019498) #30	COA3 (ENSMMNG00015019546) #31	CNTD1 (ENSMMNG00015019563) #32	BECN1 (ENSMMNG00015019652) #33	PSME3 (ENSMMNG00015019711) #34	G6PC1 (ENSMMNG00015019843) #37	AARSD1 (ENSMMNG00015019881)
Vaquita	MODERN SPECIES	12	RAB5C (ENSPSNG00000015935)	KCNH4 (ENSPSNG00000016060) #7	HCRT (ENSPSNG00000016223) #8	GHDC (ENSPSNG00000016287) #9	STAT5B (ENSPSNG00000016379) #10	STAT5A (ENSPSNG00000016550) #11	STAT3 (ENSPSNG00000016713) #13	CAVIN1 (ENSPSNG00000016836) #14	ATP6V0A1 (ENSPSNG00000016923) #15	NAGLU (ENSPSNG00000017038) #16	HSD17B1 (ENSPSNG00000017086) #17	COASY (ENSPSNG00000017165) #18	MLX (ENSPSNG00000017239) #19	PSMC3IP (ENSPSNG00000017363) #20	RETREG3 (ENSPSNG00000017441) #21	TUBG1 (ENSPSNG00000017523) #22	TUBG2 (ENSPSNG00000017567) #23	PLEKHH3 (ENSPSNG00000017623) #24	CCR10 (ENSPSNG00000017844) #25	CNTNAP1 (ENSPSNG00000017895) #26	EZH1 (ENSPSNG00000017982) #27	ENSPSNG00000018136	VPS25 (ENSPSNG00000018196) #29	WNK4 (ENSPSNG00000018341) #30	CNTD1 (ENSPSNG00000018521) #32	BECN1 (ENSPSNG00000018622) #33	PSME3 (ENSPSNG00000018730) #34	AOC2 (ENSPSNG00000018847) #35	AOC3 (ENSPSNG00000018919) #36	G6PC1 (ENSPSNG00000013217) #37	AARSD1 (ENSPSNG00000013368)
Dolphin	MODERN SPECIES	6285										NAGLU (ENSTTRG00000016413) #16	HSD17B1 (ENSTTRG00000016411) #17	COASY (ENSTTRG00000016409) #18	MLX (ENSTTRG00000016407) #19	PSMC3IP (ENSTTRG00000016406) #20	RETREG3 (ENSTTRG00000016405) #21	TUBG1 (ENSTTRG00000016404) #22
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	5	CNP (ENSPCTG00005009018)	DNAJC7 (ENSPCTG00005009095)	NKIRAS2 (ENSPCTG00005009177)	ZNF385C (ENSPCTG00005009258)	C17orf113 (ENSPCTG00005009444)	STAT5B (ENSPCTG00005009499) #10	STAT5A (ENSPCTG00005009627) #11	STAT3 (ENSPCTG00005009757) #13	ENSPCTG00005009976 ##15	EZH1 (ENSPCTG00005010030) #27	HSD17B1 (ENSPCTG00005010292) #17	COASY (ENSPCTG00005010374) #18	MLX (ENSPCTG00005010554) #19	PSMC3IP (ENSPCTG00005010711) #20	RETREG3 (ENSPCTG00005010862) #21	TUBG1 (ENSPCTG00005010947) #22	ENSPCTG00005011075 #22	COA3 (ENSPCTG00005011150) #31	CNTD1 (ENSPCTG00005011189) #32	BECN1 (ENSPCTG00005011315) #33	PSME3 (ENSPCTG00005011427) #34	AOC2 (ENSPCTG00005011473) #35	ENSPCTG00005011580 #36	ENSPCTG00005011608 #36	G6PC (ENSPCTG00005011690) #37	ENSPCTG00005011820	AARSD1 (ENSPCTG00005011875)	PTGES3L (ENSPCTG00005011935)	ENSPCTG00005012012	ENSPCTG00005012041	ENSPCTG00005012077
Sperm whale	MODERN SPECIES	5	DNAJC7 (ENSPCTG00005009095)	NKIRAS2 (ENSPCTG00005009177)	ZNF385C (ENSPCTG00005009258)	C17orf113 (ENSPCTG00005009444)	STAT5B (ENSPCTG00005009499) #10	STAT5A (ENSPCTG00005009627) #11	STAT3 (ENSPCTG00005009757) #13	ENSPCTG00005009976 ##15	EZH1 (ENSPCTG00005010030) #27	HSD17B1 (ENSPCTG00005010292) #17	COASY (ENSPCTG00005010374) #18	MLX (ENSPCTG00005010554) #19	PSMC3IP (ENSPCTG00005010711) #20	RETREG3 (ENSPCTG00005010862) #21	TUBG1 (ENSPCTG00005010947) #22	ENSPCTG00005011075 #22	COA3 (ENSPCTG00005011150) #31	CNTD1 (ENSPCTG00005011189) #32	BECN1 (ENSPCTG00005011315) #33	PSME3 (ENSPCTG00005011427) #34	AOC2 (ENSPCTG00005011473) #35	ENSPCTG00005011580 #36	ENSPCTG00005011608 #36	G6PC (ENSPCTG00005011690) #37	ENSPCTG00005011820	AARSD1 (ENSPCTG00005011875)	PTGES3L (ENSPCTG00005011935)	ENSPCTG00005012012	ENSPCTG00005012041	ENSPCTG00005012077	ETV4 (ENSPCTG00005012140)
Atlantogenata	ANCESTRAL SPECIES	1	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Xenarthra	ANCESTRAL SPECIES	128																ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183207.b.e #36	ENSGT00940000156241	ENSGT00390000007311	ENSGT00390000010721.a.b
Armadillo	MODERN SPECIES	4779																TUBG1 (ENSDNOG00000007019) #22	TUBG2 (ENSDNOG00000031693) #23	PLEKHH3 (ENSDNOG00000034610) #24	CCR10 (ENSDNOG00000013857) #25	CNTNAP1 (ENSDNOG00000013866) #26	EZH1 (ENSDNOG00000013912) #27	RAMP2 (ENSDNOG00000036920) #28	VPS25 (ENSDNOG00000013982) #29	WNK4 (ENSDNOG00000013996) #30	COA3 (ENSDNOG00000046588) #31	CNTD1 (ENSDNOG00000043655) #32	ENSDNOG00000044411 #33	ENSDNOG00000032327 #36	ENSDNOG00000032803	AARSD1 (ENSDNOG00000040976)	RUNDC1 (ENSDNOG00000005497)
Afrotheria	ANCESTRAL SPECIES	2	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Afrotheria_a	ANCESTRAL SPECIES	2	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.b #10	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000162499 #23	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164.c #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Hyrax	MODERN SPECIES	5143												COASY (ENSPCAG00000014132) #18	MLX (ENSPCAG00000014225) #19	PSMC3IP (ENSPCAG00000014286) #20	RETREG3 (ENSPCAG00000014329) #21	TUBG1 (ENSPCAG00000014378) #22
Marsupialia	DUPLICATION
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.a.b.c ##11	ENSGT01080000257420.C.b.b.a.b.a.a ##11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00940000160415 #17	ENSGT00390000005900 #16	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957.a #22	ENSGT00940000156957.b #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Opossum	MODERN SPECIES	1	HCRT (ENSMODG00000014798) #8	GHDC (ENSMODG00000014802) #9	ENSMODG00000014816 ##11	ENSMODG00000014836 ##11	STAT3 (ENSMODG00000028212) #13	CAVIN1 (ENSMODG00000014859) #14	ENSMODG00000014862	ENSMODG00000042038	ATP6V0A1 (ENSMODG00000014883) #15	HSD17B1 (ENSMODG00000014909) #17	ENSMODG00000047248 #16	COASY (ENSMODG00000043140) #18	MLX (ENSMODG00000049716) #19	ENSMODG00000014923 #20	RETREG3 (ENSMODG00000014932) #21	TUBG1 (ENSMODG00000014971) #22	PLEKHH3 (ENSMODG00000014981) #24	CCR10 (ENSMODG00000014987) #25	CNTNAP1 (ENSMODG00000015017) #26	EZH1 (ENSMODG00000015033) #27	ENSMODG00000015038 #28	VPS25 (ENSMODG00000024174) #29	WNK4 (ENSMODG00000015051) #30	COA3 (ENSMODG00000015055) #31	CNTD1 (ENSMODG00000024176) #32	ENSMODG00000015064 #33	PSME3 (ENSMODG00000051476) #34	AOC2 (ENSMODG00000015079) #35	ENSMODG00000041328 #36	G6PC1 (ENSMODG00000042888) #37	AARSD1 (ENSMODG00000015109)
Marsupialia_b	ANCESTRAL SPECIES	26	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.a.b.c ##11	ENSGT01080000257420.C.b.b.a.b.a.a.b ##11	ENSGT01050000244905.B #13	ENSGT00390000005900 #16	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957.a #22	ENSGT00940000156957.b #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Diprotodontia	ANCESTRAL SPECIES	33	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.a.b.c ##11	ENSGT01080000257420.C.b.b.a.b.a.a.b ##11	ENSGT01050000244905.B #13	ENSGT00390000005900 #16	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957.a #22	ENSGT00940000156957.b #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Diprotodontia_a	ANCESTRAL SPECIES	32	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.a.b.c ##11	ENSGT01080000257420.C.b.b.a.b.a.b.d ##11	ENSGT01050000244905.B #13	ENSGT00390000005900 #16	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957.a #22	ENSGT00940000156957.b #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37
Common wonbat	MODERN SPECIES	1034	DHX58 (ENSVURG00010021951)	KAT2A (ENSVURG00010021945)	RAB5C (ENSVURG00010021939)	ENSVURG00010021931 #7	GHDC (ENSVURG00010021924) #9	ENSVURG00010021865 ##11	ENSVURG00010021853 ##11	STAT3 (ENSVURG00010021829) #13	CAVIN1 (ENSVURG00010021819) #14	ATP6V0A1 (ENSVURG00010021803) #15	HSD17B1 (ENSVURG00010021755) #17	COASY (ENSVURG00010021745) #18	MLX (ENSVURG00010021740) #19	PSMC3IP (ENSVURG00010021737) #20	RETREG3 (ENSVURG00010021727) #21	ENSVURG00010021724 #22	ENSVURG00010021719 #22	PLEKHH3 (ENSVURG00010021715) #24	CCR10 (ENSVURG00010021712) #25	CNTNAP1 (ENSVURG00010021704) #26	EZH1 (ENSVURG00010021689) #27	ENSVURG00010021682 #28	VPS25 (ENSVURG00010021675) #29	WNK4 (ENSVURG00010021662) #30	COA3 (ENSVURG00010021656) #31	CNTD1 (ENSVURG00010021652) #32	ENSVURG00010021647 #33	PSME3 (ENSVURG00010021631) #34	AOC2 (ENSVURG00010021620) #35	AOC3 (ENSVURG00010021616) #36	G6PC1 (ENSVURG00010021612) #37
Wallaby	MODERN SPECIES	1793										ENSMEUG00000000158 #16	HSD17B1 (ENSMEUG00000000167) #17	COASY (ENSMEUG00000000177) #18	MLX (ENSMEUG00000000185) #19	PSMC3IP (ENSMEUG00000000190) #20	RETREG3 (ENSMEUG00000000195) #21	TUBG1 (ENSMEUG00000000208) #22
Tasmanian devil	MODERN SPECIES	3	ENSSHAG00000028135	RAB5C (ENSSHAG00000005267)	KCNH4 (ENSSHAG00000004779) #7	GHDC (ENSSHAG00000004562) #9	HCRT (ENSSHAG00000024096) #8	ENSSHAG00000003879 #10	ENSSHAG00000031543 ##11	ENSSHAG00000025740 ##11	STAT3 (ENSSHAG00000014833) #13	ENSSHAG00000031038 #16	CAVIN1 (ENSSHAG00000030328) #14	ATP6V0A1 (ENSSHAG00000014290) #15	HSD17B1 (ENSSHAG00000021617) #17	ENSSHAG00000014192 #19	COASY (ENSSHAG00000025240) #18	ENSSHAG00000014001 #22	RETREG3 (ENSSHAG00000014032) #21	ENSSHAG00000027743 #20	ENSSHAG00000021788 #22	PLEKHH3 (ENSSHAG00000013666) #24	CCR10 (ENSSHAG00000013638) #25	CNTNAP1 (ENSSHAG00000013557) #26	EZH1 (ENSSHAG00000013372) #27	ENSSHAG00000026758 #28	VPS25 (ENSSHAG00000027474) #29	WNK4 (ENSSHAG00000012881) #30	COA3 (ENSSHAG00000024399) #31	ENSSHAG00000028378 #33	CNTD1 (ENSSHAG00000024092) #32	PSME3 (ENSSHAG00000027381) #34	AOC3 (ENSSHAG00000022619) #36
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.a.b.c ##11	ENSGT01080000257420.C.b.b.a.b.a.a ##11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00940000160415 #17	ENSGT00390000005900 #16	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957.a #22	ENSGT00940000156957.b #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37	ENSGT00940000156241
Marsupialia_b	ANCESTRAL SPECIES	26	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.a.b.c ##11	ENSGT01080000257420.C.b.b.a.b.a.a.b ##11	ENSGT01050000244905.B #13	ENSGT00390000005900 #16	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957.a #22	ENSGT00940000156957.b #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37	ENSGT00940000156241
Diprotodontia	ANCESTRAL SPECIES	33	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.a.b.c ##11	ENSGT01080000257420.C.b.b.a.b.a.a.b ##11	ENSGT01050000244905.B #13	ENSGT00390000005900 #16	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957.a #22	ENSGT00940000156957.b #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37	ENSGT00940000156241
Diprotodontia_a	ANCESTRAL SPECIES	32	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.a.b.a.b.c ##11	ENSGT01080000257420.C.b.b.a.b.a.b.d ##11	ENSGT01050000244905.B #13	ENSGT00390000005900 #16	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957.a #22	ENSGT00940000156957.b #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.f #35	ENSGT00950000183207.b.e #36	ENSGT00950000183150.a.a #37	ENSGT00940000156241
Common wonbat	MODERN SPECIES	1034	KAT2A (ENSVURG00010021945)	RAB5C (ENSVURG00010021939)	ENSVURG00010021931 #7	GHDC (ENSVURG00010021924) #9	ENSVURG00010021865 ##11	ENSVURG00010021853 ##11	STAT3 (ENSVURG00010021829) #13	CAVIN1 (ENSVURG00010021819) #14	ATP6V0A1 (ENSVURG00010021803) #15	HSD17B1 (ENSVURG00010021755) #17	COASY (ENSVURG00010021745) #18	MLX (ENSVURG00010021740) #19	PSMC3IP (ENSVURG00010021737) #20	RETREG3 (ENSVURG00010021727) #21	ENSVURG00010021724 #22	ENSVURG00010021719 #22	PLEKHH3 (ENSVURG00010021715) #24	CCR10 (ENSVURG00010021712) #25	CNTNAP1 (ENSVURG00010021704) #26	EZH1 (ENSVURG00010021689) #27	ENSVURG00010021682 #28	VPS25 (ENSVURG00010021675) #29	WNK4 (ENSVURG00010021662) #30	COA3 (ENSVURG00010021656) #31	CNTD1 (ENSVURG00010021652) #32	ENSVURG00010021647 #33	PSME3 (ENSVURG00010021631) #34	AOC2 (ENSVURG00010021620) #35	AOC3 (ENSVURG00010021616) #36	G6PC1 (ENSVURG00010021612) #37	AARSD1 (ENSVURG00010021603)
koala	MODERN SPECIES	230	KCNH4 (ENSPCIG00000020224) #7	ENSPCIG00000037370 #8	ENSPCIG00000020222 #9	ENSPCIG00000031490 ##11	ENSPCIG00000034849 ##11	ENSPCIG00000020221 ##11	STAT3 (ENSPCIG00000025545) #13	ENSPCIG00000005105 #16	CAVIN1 (ENSPCIG00000033169) #14	ATP6V0A1 (ENSPCIG00000020213) #15	HSD17B1 (ENSPCIG00000021527) #17	COASY (ENSPCIG00000021526) #18	MLX (ENSPCIG00000021525) #19	PSMC3IP (ENSPCIG00000021517) #20	RETREG3 (ENSPCIG00000021516) #21	TUBG1 (ENSPCIG00000021514) #22	PLEKHH3 (ENSPCIG00000021512) #24	CCR10 (ENSPCIG00000035818) #25	CNTNAP1 (ENSPCIG00000021508) #26	EZH1 (ENSPCIG00000021506) #27	VPS25 (ENSPCIG00000021502) #29	WNK4 (ENSPCIG00000021500) #30	COA3 (ENSPCIG00000021499) #31	CNTD1 (ENSPCIG00000021498) #32	ENSPCIG00000021495 #33	AOC2 (ENSPCIG00000021493) #35	AOC3 (ENSPCIG00000021492) #36	G6PC1 (ENSPCIG00000021491) #37	AARSD1 (ENSPCIG00000021490)	ENSPCIG00000021489	PTGES3L (ENSPCIG00000021488)
Tasmanian devil	MODERN SPECIES	3	GHDC (ENSSHAG00000004562) #9	HCRT (ENSSHAG00000024096) #8	ENSSHAG00000003879 #10	ENSSHAG00000031543 ##11	ENSSHAG00000025740 ##11	STAT3 (ENSSHAG00000014833) #13	ENSSHAG00000031038 #16	CAVIN1 (ENSSHAG00000030328) #14	ATP6V0A1 (ENSSHAG00000014290) #15	HSD17B1 (ENSSHAG00000021617) #17	ENSSHAG00000014192 #19	COASY (ENSSHAG00000025240) #18	ENSSHAG00000014001 #22	RETREG3 (ENSSHAG00000014032) #21	ENSSHAG00000027743 #20	ENSSHAG00000021788 #22	PLEKHH3 (ENSSHAG00000013666) #24	CCR10 (ENSSHAG00000013638) #25	CNTNAP1 (ENSSHAG00000013557) #26	EZH1 (ENSSHAG00000013372) #27	ENSSHAG00000026758 #28	VPS25 (ENSSHAG00000027474) #29	WNK4 (ENSSHAG00000012881) #30	COA3 (ENSSHAG00000024399) #31	ENSSHAG00000028378 #33	CNTD1 (ENSSHAG00000024092) #32	PSME3 (ENSSHAG00000027381) #34	AOC3 (ENSSHAG00000022619) #36	G6PC1 (ENSSHAG00000022890) #37	ENSSHAG00000024959	AARSD1 (ENSSHAG00000012128)
Platypus	MODERN SPECIES	2	KAT2A (ENSOANG00000009954)	RAB5C (ENSOANG00000045966)	HCRT (ENSOANG00000036684) #8	ENSOANG00000040986 #9	ENSOANG00000047475 ##11	ENSOANG00000036299 #10	STAT3 (ENSOANG00000045032) #13	CAVIN1 (ENSOANG00000044560) #14	ATP6V0A1 (ENSOANG00000002545) #15	NAGLU (ENSOANG00000046545) #16	HSD17B1 (ENSOANG00000046496) #17	ENSOANG00000042429 #18	MLX (ENSOANG00000004620) #19	PSMC3IP (ENSOANG00000049288) #20	RETREG3 (ENSOANG00000047123) #21	TUBG1 (ENSOANG00000004489) #22	ENSOANG00000043520	CCR10 (ENSOANG00000039679) #25	CNTNAP1 (ENSOANG00000004285) #26	EZH1 (ENSOANG00000043633) #27	ENSOANG00000042670 #28	VPS25 (ENSOANG00000040705) #29	ENSOANG00000029972 #30	COA3 (ENSOANG00000049875) #31	CNTD1 (ENSOANG00000012163) #32	ENSOANG00000012164 #33	PSME3 (ENSOANG00000046910) #34	ENSOANG00000036444 #36	G6PC1 (ENSOANG00000049694) #37	AARSD1 (ENSOANG00000013149)	PTGES3L (ENSOANG00000036191)
Sauria	ANCESTRAL SPECIES	26	ENSGT00950000182910.b #14	ENSGT00940000155904	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b ##15	ENSGT00940000163374	ENSGT00390000001189.b	ENSGT00950000182881.a.a.b #15	ENSGT00940000154014.b.a	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000165444	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00950000185523	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.c.a #36	ENSGT00950000183207.b.d #36	ENSGT00950000183150.a.a.d #37
Lepidosauria	ANCESTRAL SPECIES	23	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00940000164828	ENSGT01080000257420.C.b.b.b ##11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00940000154014.b.a	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000165444	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00950000185523	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.c.a #36	ENSGT00950000183207.b.d #36	ENSGT00950000183150.a.a.d #37	ENSGT00950000183150.a.a.c #37
Episquamata	ANCESTRAL SPECIES	5	ENSGT00920000149138	ENSGT00940000158827	ENSGT00390000016292	ENSGT00940000158377.b	ENSGT00940000158767	ENSGT00390000006939	ENSGT00940000157790	ENSGT00940000163600	ENSGT00940000156447.b	ENSGT00530000063836.b	ENSGT01050000244842.a.b.b.b.n	ENSGT00940000155510	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00950000185523	ENSGT00940000160264 #28	ENSGT00940000166494	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.c.a.f #36	ENSGT00950000183207.b.c.a.e #36	ENSGT00950000183207.b.d #36
Toxicofera	ANCESTRAL SPECIES	4	ENSGT00920000149138	ENSGT00940000158827	ENSGT00390000016292	ENSGT00940000158377.b	ENSGT00940000158767	ENSGT00390000006939	ENSGT00940000157790	ENSGT00940000163600	ENSGT00940000156447.b	ENSGT00530000063836.b	ENSGT01050000244842.a.b.b.b.n	ENSGT00940000155510	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00950000185523	ENSGT00940000160264 #28	ENSGT00940000166494	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.c.a.f #36	ENSGT00950000183207.b.c.a.e #36	ENSGT00950000183207.b.d #36
Elapidae	ANCESTRAL SPECIES	5	ENSGT00920000149138	ENSGT00940000158827	ENSGT00390000016292	ENSGT00940000158377.b	ENSGT00940000158767	ENSGT00390000006939.a	ENSGT00940000157790	ENSGT00940000163600.e.a	ENSGT00940000156447.b	ENSGT00530000063836.b	ENSGT01050000244842.a.b.b.b.n	ENSGT00940000155510	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604.i #27	ENSGT00940000156604.j #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.c.a.f #36	ENSGT00950000183207.b.c.a.e #36	ENSGT00950000183207.b.d #36	ENSGT00950000183150.a.a.d #37
Elapidae_a	ANCESTRAL SPECIES	78	ENSGT00940000158827.a	ENSGT00390000016292	ENSGT00940000158377.b	ENSGT00940000158767	ENSGT00390000006939.a.a	ENSGT00940000157790	ENSGT00940000163600.e.b	ENSGT00940000163600.e.a	ENSGT00940000156447.b	ENSGT00530000063836.b	ENSGT01050000244842.a.b.b.b.n	ENSGT00940000155510	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604.i #27	ENSGT00940000156604.j #27	ENSGT00940000160264 #28
Acanthophiinae	ANCESTRAL SPECIES	77	ENSGT00920000149138	ENSGT00940000158827.a	ENSGT00390000016292	ENSGT00940000158377.b	ENSGT00940000158767	ENSGT00390000006939.a.a	ENSGT00940000157790	ENSGT00940000163600.e.a	ENSGT00940000156447.b	ENSGT00530000063836.b	ENSGT01050000244842.a.b.b.b.n	ENSGT00940000155510	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604.i #27	ENSGT00940000156604.j #27	ENSGT00940000160264 #28
Mainland tiger snake	MODERN SPECIES	121	ENSNSUG00000017508	STRADA (ENSNSUG00000017505)	ENSNSUG00000017504	LIMD2 (ENSNSUG00000017503)	MAP3K3 (ENSNSUG00000017495)	ENSNSUG00000017493	KCNH6 (ENSNSUG00000017492)	ENSNSUG00000017491	TANC2 (ENSNSUG00000017384)	MARCHF10 (ENSNSUG00000017365)	MRC2 (ENSNSUG00000017364)	DHX8 (ENSNSUG00000017212)	MLX (ENSNSUG00000017207) #19	PSMC3IP (ENSNSUG00000017206) #20	RETREG3 (ENSNSUG00000017203) #21	TUBG1 (ENSNSUG00000017201) #22	ENSNSUG00000017199 #25	CNTNAP1 (ENSNSUG00000017193) #26	EZH1 (ENSNSUG00000017192) #27	RAMP2 (ENSNSUG00000017191) #28
Eastern brown snake	MODERN SPECIES	93	ENSPTXG00000017165	LIMD2 (ENSPTXG00000017171)	MAP3K3 (ENSPTXG00000017175)	ENSPTXG00000017184	KCNH6 (ENSPTXG00000017188)	ENSPTXG00000017193	ENSPTXG00000017213	ENSPTXG00000017222	TANC2 (ENSPTXG00000017227)	MARCHF10 (ENSPTXG00000017246)	MRC2 (ENSPTXG00000017325)	DHX8 (ENSPTXG00000018084)	MLX (ENSPTXG00000018085) #19	PSMC3IP (ENSPTXG00000018086) #20	RETREG3 (ENSPTXG00000018087) #21	TUBG1 (ENSPTXG00000018088) #22	PLEKHH3 (ENSPTXG00000018089) #24	ENSPTXG00000018090 #25	CNTNAP1 (ENSPTXG00000018091) #26	EZH1 (ENSPTXG00000018122) #27	RAMP2 (ENSPTXG00000018128) #28
Blue-lipped sea krait	MODERN SPECIES	9283															RETREG3 (ENSLLTG00000004797) #21	TUBG1 (ENSLLTG00000004782) #22	PLEKHH3 (ENSLLTG00000004772) #24
Indian cobra	MODERN SPECIES	337	ENSNNAG00000004450	STRADA (ENSNNAG00000004483)	ENSNNAG00000004521	LIMD2 (ENSNNAG00000004550)	MAP3K3 (ENSNNAG00000004585)	ENSNNAG00000004662	KCNH6 (ENSNNAG00000004680)	ENSNNAG00000004734	TANC2 (ENSNNAG00000004948)	ENSNNAG00000005752	MRC2 (ENSNNAG00000005829)	DHX8 (ENSNNAG00000006081)	MLX (ENSNNAG00000007481) #19	PSMC3IP (ENSNNAG00000007497) #20	RETREG3 (ENSNNAG00000007538) #21	TUBG1 (ENSNNAG00000007583) #22	PLEKHH3 (ENSNNAG00000007653) #24	ENSNNAG00000007724 #25	CNTNAP1 (ENSNNAG00000007775) #26	ENSNNAG00000008258 #27	ENSNNAG00000008704 #27	RAMP2 (ENSNNAG00000008735) #28	VPS25 (ENSNNAG00000008755) #29	WNK4 (ENSNNAG00000008782) #30	CNTD1 (ENSNNAG00000008838) #32	ENSNNAG00000008902 #33	PSME3 (ENSNNAG00000008920) #34	ENSNNAG00000008982 #36	ENSNNAG00000009008 #36	ENSNNAG00000009072 #36	ENSNNAG00000009093
Lizard	MODERN SPECIES	5	MAP3K3 (ENSACAG00000012612)	DCAF7 (ENSACAG00000012744)	KCNH6 (ENSACAG00000012786)	ENSACAG00000041789	ENSACAG00000013067	TANC2 (ENSACAG00000013237)	ENSACAG00000045506	ENSACAG00000043250	ENSACAG00000039678	MARCHF10 (ENSACAG00000013343)	MRC2 (ENSACAG00000013359)	ENSACAG00000013509	MLX (ENSACAG00000013679) #19	PSMC3IP (ENSACAG00000013719) #20	RETREG3 (ENSACAG00000013745) #21	TUBG1 (ENSACAG00000013771) #22	PLEKHH3 (ENSACAG00000045328) #24	CCR10 (ENSACAG00000013855) #25	CNTNAP1 (ENSACAG00000013861) #26	EZH1 (ENSACAG00000014235) #27	ENSACAG00000039667	RAMP2 (ENSACAG00000014409) #28	ENSACAG00000029184	VPS25 (ENSACAG00000036831) #29	WNK4 (ENSACAG00000013892) #30	CNTD1 (ENSACAG00000041843) #32	ENSACAG00000013769 #33	ENSACAG00000013688 #34	ENSACAG00000013687 #36	ENSACAG00000041967	ENSACAG00000043366 #36
Laterata	ANCESTRAL SPECIES	11	ENSGT00920000149138	ENSGT00940000158827	ENSGT00390000016292	ENSGT00940000158377.b	ENSGT00940000158767	ENSGT00390000006939	ENSGT00940000157790	ENSGT00940000163600	ENSGT00940000156447.b	ENSGT00530000063836.b	ENSGT01050000244842.a.b.b.b.n	ENSGT00940000155510	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00950000185523	ENSGT00940000160264 #28	ENSGT00940000166494	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.c.a.f #36	ENSGT00950000183207.b.c.a.e #36	ENSGT00950000183207.b.d #36
Common wall lizard	MODERN SPECIES	4	POLR1A (ENSPMRG00000012913)	STRADA (ENSPMRG00000012875)	ENSPMRG00000012861	LIMD2 (ENSPMRG00000012857)	MAP3K3 (ENSPMRG00000012772)	DCAF7 (ENSPMRG00000012748)	KCNH6 (ENSPMRG00000012739)	ENSPMRG00000012721	TANC2 (ENSPMRG00000012240)	MARCHF10 (ENSPMRG00000012177)	MRC2 (ENSPMRG00000011552)	DHX8 (ENSPMRG00000011428)	MLX (ENSPMRG00000011421) #19	PSMC3IP (ENSPMRG00000011416) #20	RETREG3 (ENSPMRG00000011412) #21	TUBG1 (ENSPMRG00000011407) #22	PLEKHH3 (ENSPMRG00000011398) #24	ENSPMRG00000011393	ENSPMRG00000011390	ENSPMRG00000011386	ENSPMRG00000011382	ENSPMRG00000011379	ENSPMRG00000011375	ENSPMRG00000011372	TMEM106A (ENSPMRG00000011369)	NBR1 (ENSPMRG00000011365)	ENSPMRG00000011351	RND2 (ENSPMRG00000011341)	ENSPMRG00000011337	IFI35 (ENSPMRG00000011331)	RPL27 (ENSPMRG00000011326)
Argentine black and white tegu	MODERN SPECIES	70	POLR1A (ENSSMRG00000016742)	STRADA (ENSSMRG00000016739)	ENSSMRG00000016738	LIMD2 (ENSSMRG00000016732)	MAP3K3 (ENSSMRG00000016726)	DCAF7 (ENSSMRG00000016723)	KCNH6 (ENSSMRG00000016721)	ENSSMRG00000016712	TANC2 (ENSSMRG00000016709)	MARCHF10 (ENSSMRG00000016706)	MRC2 (ENSSMRG00000016703)	DHX8 (ENSSMRG00000016700)	MLX (ENSSMRG00000016697) #19	PSMC3IP (ENSSMRG00000016695) #20	RETREG3 (ENSSMRG00000016692) #21	TUBG1 (ENSSMRG00000016619) #22	CCR10 (ENSSMRG00000016616) #25	CNTNAP1 (ENSSMRG00000016613) #26	EZH1 (ENSSMRG00000016612) #27	ENSSMRG00000016611	RAMP2 (ENSSMRG00000016610) #28
tuatara	MODERN SPECIES	925			ENSSPUG00000006083 ##11	STAT3 (ENSSPUG00000005859) #13	CAVIN1 (ENSSPUG00000005834) #14	ENSSPUG00000005831 #14	ATP6V0A1 (ENSSPUG00000005810) #15	ENSSPUG00000005799	NAGLU (ENSSPUG00000005791) #16	HSD17B1 (ENSSPUG00000005774) #17	COASY (ENSSPUG00000005761) #18	ENSSPUG00000005750	MLX (ENSSPUG00000005726) #19	PSMC3IP (ENSSPUG00000005696) #20	ENSSPUG00000005682	TUBG1 (ENSSPUG00000005667) #22	PLEKHH3 (ENSSPUG00000005650) #24	EZH1 (ENSSPUG00000005551) #27	RAMP2 (ENSSPUG00000005530) #28	VPS25 (ENSSPUG00000005521) #29	ENSSPUG00000005504	ENSSPUG00000005490 #30	ENSSPUG00000005483	CNTD1 (ENSSPUG00000005458) #32	ENSSPUG00000005444 #33	PSME3 (ENSSPUG00000005306) #34	ENSSPUG00000005262 #36	ENSSPUG00000005144 #36	ENSSPUG00000005082 #37	ENSSPUG00000004980 #37	ENSSPUG00000004672 #37
Archelosauria	ANCESTRAL SPECIES	21	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00940000155904	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b ##15	ENSGT00940000163374	ENSGT00950000182881.a.a.b #15	ENSGT00940000154014.b.a	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000165444	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000167154	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00950000185523	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.c.a #36	ENSGT00950000183207.b.d #36	ENSGT00950000183150.a.a.d.d #37
Archosauria	ANCESTRAL SPECIES	20	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00940000164828	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.b ##11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00940000154014.b.a	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000167154	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00950000185523	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.c.a #36	ENSGT00950000183207.b.d #36	ENSGT00950000183150.a.a.d.d #37
Aves	ANCESTRAL SPECIES	26	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00940000164828	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.b ##11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00940000154014.b.a	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000167154	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00950000185523	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.c.a #36	ENSGT00950000183207.b.d #36	ENSGT00950000183150.a.a.d.d #37
Neognathae	ANCESTRAL SPECIES	23	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00940000164828	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.b ##11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00940000154014.b.a	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000167154	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00950000185523	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.c.a.a.a #36	ENSGT00950000183207.b.d #36	ENSGT00950000183150.a.a.d.d #37
Galloanserae	ANCESTRAL SPECIES	23	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00940000164828	ENSGT01080000257420.C.b.b.b ##11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00940000154014.b.a	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000167154	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.c.a.a.a #36	ENSGT00950000183207.b.d #36	ENSGT00950000183150.a.a.d.d #37	ENSGT00940000156241
Phasianidae	ANCESTRAL SPECIES	21	ENSGT00670000098179.s	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00940000164828	ENSGT01080000257420.C.b.b.b ##11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000167154	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00390000014892 #29	ENSGT00940000160264 #28	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.c.a.a.a #36	ENSGT00950000183207.b.d #36	ENSGT00950000183150.a.a.d.d #37	ENSGT00940000156241
Phasianidae_b	ANCESTRAL SPECIES	21	ENSGT00670000098179.s	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00940000164828	ENSGT01080000257420.C.b.b.b ##11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000167154	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.c.a.a.a #36	ENSGT00950000183207.b.d #36	ENSGT00950000183150.a.a.d.d #37	ENSGT00940000156241	ENSGT00940000163448	ENSGT00390000007311
Chicken	MODERN SPECIES	19	KAT2A (ENSGALG00010023179)	HSPB9 (ENSGALG00010023206)	RAB5C (ENSGALG00010023265)	KCNH4 (ENSGALG00010023277) #7	HCRT (ENSGALG00010023286) #8	ENSGALG00010023304	STAT5A (ENSGALG00010023347) ##11	STAT3 (ENSGALG00010026098) #13	PTRF (ENSGALG00010021165) #14	ATP6V0A1 (ENSGALG00010021196) #15	NAGLU (ENSGALG00010021204) #16	HSD17B1 (ENSGALG00010021206) #17	COASY (ENSGALG00010021233) #18	PSMC3IP (ENSGALG00010021329) #20	FAM134C (ENSGALG00010021363)	TUBG1 (ENSGALG00010021375) #22	PLEKHH3 (ENSGALG00010021416) #24	CCR10 (ENSGALG00010021440) #25	CNTNAP1 (ENSGALG00010022182) #26	EZH1 (ENSGALG00010022210) #27	RAMP2 (ENSGALG00010022235)	WNK4 (ENSGALG00010022251) #30	COA3 (ENSGALG00010022266) #31	CNTD1 (ENSGALG00010022269) #32	BECN1 (ENSGALG00010022276) #33	PSME3 (ENSGALG00010022317) #34	ENSGALG00010026686 #36	AOC3 (ENSGALG00010022333) #36	G6PC1 (ENSGALG00010022348) #37	AARSD1 (ENSGALG00010022366)	PTGES3L (ENSGALG00010022395)
Turkey	MODERN SPECIES	21	PTGES3L (ENSMGAG00000004245)	ENSMGAG00000021589 #36	ENSMGAG00000022525 #36	ENSMGAG00000017036 #36	ENSMGAG00000004239 #37	ENSMGAG00000020327	ENSMGAG00000017696	PSME3 (ENSMGAG00000004196) #34	ENSMGAG00000017083	ENSMGAG00000004162 #33	ENSMGAG00000021697 #29	RAMP2 (ENSMGAG00000018890) #28	ENSMGAG00000003745 #26	ENSMGAG00000003995 #27	CCR10 (ENSMGAG00000016373) #25	TUBG1 (ENSMGAG00000004052) #22	ENSMGAG00000003941	ENSMGAG00000003897 #19	ENSMGAG00000003898 #20	COASY (ENSMGAG00000016557) #18	ENSMGAG00000003581 #15	ENSMGAG00000021221 #15	ENSMGAG00000003400 #14	ENSMGAG00000003545 #13	ENSMGAG00000003430 ##11	ENSMGAG00000022054 #8	ENSMGAG00000003418	ENSMGAG00000003384 #7	ENSMGAG00000003365	ENSMGAG00000003367	ENSMGAG00000003373
Japanese quail	MODERN SPECIES	19	ENSCJPG00005004858	ENSCJPG00005004859	RAB5C (ENSCJPG00005004861)	KCNH4 (ENSCJPG00005004866) #7	ENSCJPG00005004868	ENSCJPG00005004878 ##11	STAT3 (ENSCJPG00005004883) #13	CAVIN1 (ENSCJPG00005004884) #14	ATP6V0A1 (ENSCJPG00005004885) #15	ENSCJPG00005004889 #16	ENSCJPG00005004914 #16	COASY (ENSCJPG00005004926) #18	MLX (ENSCJPG00005004927) #19	PSMC3IP (ENSCJPG00005004930) #20	ENSCJPG00005004934	TUBG1 (ENSCJPG00005004950) #22	PLEKHH3 (ENSCJPG00005005308) #24	CCR10 (ENSCJPG00005005317) #25	CNTNAP1 (ENSCJPG00005005320) #26	EZH1 (ENSCJPG00005005323) #27	VPS25 (ENSCJPG00005005339) #29	RAMP2 (ENSCJPG00005005343) #28	WNK4 (ENSCJPG00005005350) #30	ENSCJPG00005005362	CNTD1 (ENSCJPG00005005364) #32	ENSCJPG00005005365 #33	PSME3 (ENSCJPG00005005366) #34	ENSCJPG00005005371 #36	ENSCJPG00005005380 #36	G6PC1 (ENSCJPG00005005382) #37	AARSD1 (ENSCJPG00005005398)
Anatidae	ANCESTRAL SPECIES	43	ENSGT00940000154971.t	ENSGT00940000156363 #7	ENSGT00940000164828	ENSGT00390000014272 #8	ENSGT01080000257420.C.b.b.b ##11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00940000154014.b.a	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000167154	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00950000186402	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.c.a.a.b #36	ENSGT00950000183207.b.d #36	ENSGT00950000183150.a.a.d.d #37	ENSGT00940000156241
Pink-footed goose	MODERN SPECIES	200	KCNH4 (ENSABRG00000009607) #7	ENSABRG00000009631	HCRT (ENSABRG00000009652) #8	ENSABRG00000009863 ##11	ENSABRG00000012651	STAT3 (ENSABRG00000012657) #13	CAVIN1 (ENSABRG00000012683) #14	ATP6V0A1 (ENSABRG00000012701) #15	ENSABRG00000012708	NAGLU (ENSABRG00000012714) #16	COASY (ENSABRG00000012721) #18	HSD17B1 (ENSABRG00000012753) #17	MLX (ENSABRG00000012764) #19	PSMC3IP (ENSABRG00000012856) #20	ENSABRG00000012879	TUBG1 (ENSABRG00000012934) #22	PLEKHH3 (ENSABRG00000012943) #24	CCR10 (ENSABRG00000012951) #25	CNTNAP1 (ENSABRG00000012955) #26	EZH1 (ENSABRG00000012958) #27	RAMP2 (ENSABRG00000012970) #28	VPS25 (ENSABRG00000012975) #29	WNK4 (ENSABRG00000012989) #30	ENSABRG00000013016	CNTD1 (ENSABRG00000013032) #32	ENSABRG00000013039 #33	PSME3 (ENSABRG00000013060) #34	ENSABRG00000013066 #36	ENSABRG00000013075 #36	G6PC1 (ENSABRG00000013080) #37	AARSD1 (ENSABRG00000013088)
Neognathae_b	ANCESTRAL SPECIES	23	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00940000164828	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.b ##11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000167154	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00950000185523	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.c.a.a.a #36	ENSGT00950000183207.b.d #36	ENSGT00950000183150.a.a.d.d #37
Neognathae_c	ANCESTRAL SPECIES	26	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00940000164828	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.b ##11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000167154	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00950000185523	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.c.a.a.b #36	ENSGT00950000183207.b.c.a.a.a #36	ENSGT00950000183207.b.d #36
Golden eagle	MODERN SPECIES	24	ENSACCG00020001939	RAB5C (ENSACCG00020001925)	KCNH4 (ENSACCG00020001903) #7	ENSACCG00020001868	GHDC (ENSACCG00020001838) #9	ENSACCG00020001801 ##11	STAT3 (ENSACCG00020001762) #13	CAVIN1 (ENSACCG00020001731) #14	ATP6V0A1 (ENSACCG00020001663) #15	NAGLU (ENSACCG00020001605) #16	HSD17B1 (ENSACCG00020001592) #17	COASY (ENSACCG00020001550) #18	MLX (ENSACCG00020001506) #19	PSMC3IP (ENSACCG00020001481) #20	ENSACCG00020001458	TUBG1 (ENSACCG00020001432) #22	PLEKHH3 (ENSACCG00020001396) #24	CCR10 (ENSACCG00020001375) #25	CNTNAP1 (ENSACCG00020001235) #26	EZH1 (ENSACCG00020001100) #27	ENSACCG00020001061	RAMP2 (ENSACCG00020001047) #28	VPS25 (ENSACCG00020001035) #29	WNK4 (ENSACCG00020001019) #30	COA3 (ENSACCG00020000998) #31	CNTD1 (ENSACCG00020000976) #32	ENSACCG00020000960 #33	PSME3 (ENSACCG00020000939) #34	ENSACCG00020000917 #36	ENSACCG00020000901 #36	ENSACCG00020000885 #36
Kakapo	MODERN SPECIES	12	RAB5C (ENSSHBG00005012497)	KCNH4 (ENSSHBG00005012514) #7	HCRT (ENSSHBG00005012526) #8	ENSSHBG00005012537	GHDC (ENSSHBG00005012556) #9	ENSSHBG00005012580 ##11	STAT3 (ENSSHBG00005012631) #13	CAVIN1 (ENSSHBG00005012746) #14	ATP6V0A1 (ENSSHBG00005012810) #15	NAGLU (ENSSHBG00005012921) #16	HSD17B1 (ENSSHBG00005012936) #17	COASY (ENSSHBG00005012962) #18	MLX (ENSSHBG00005012998) #19	PSMC3IP (ENSSHBG00005013027) #20	ENSSHBG00005013042	TUBG1 (ENSSHBG00005013051) #22	PLEKHH3 (ENSSHBG00005013066) #24	CCR10 (ENSSHBG00005013089) #25	EZH1 (ENSSHBG00005013148) #27	RAMP2 (ENSSHBG00005013361) #28	VPS25 (ENSSHBG00005013380) #29	WNK4 (ENSSHBG00005013395) #30	COA3 (ENSSHBG00005013413) #31	CNTD1 (ENSSHBG00005013497) #32	ENSSHBG00005013517 #33	PSME3 (ENSSHBG00005013541) #34	ENSSHBG00005013554 #36	ENSSHBG00005013561 #36	ENSSHBG00005013582 #36	G6PC1 (ENSSHBG00005013608) #37	AARSD1 (ENSSHBG00005013629)
Passeriformes	ANCESTRAL SPECIES	29	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00940000164828	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.b ##11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000167154	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.c.a.a.a #36	ENSGT00950000183207.b.d #36	ENSGT00950000183150.a.a.d.d #37	ENSGT00940000156241
Great tit	MODERN SPECIES	20	ENSPMJG00000001107	ENSPMJG00000001111	RAB5C (ENSPMJG00000001121)	KCNH4 (ENSPMJG00000001137) #7	ENSPMJG00000001140	GHDC (ENSPMJG00000001142) #9	ENSPMJG00000001145 ##11	STAT3 (ENSPMJG00000001154) #13	CAVIN1 (ENSPMJG00000001161) #14	ATP6V0A1 (ENSPMJG00000001165) #15	NAGLU (ENSPMJG00000001198) #16	HSD17B1 (ENSPMJG00000001207) #17	MLX (ENSPMJG00000001794) #19	PSMC3IP (ENSPMJG00000001798) #20	ENSPMJG00000001800	TUBG1 (ENSPMJG00000001817) #22	PLEKHH3 (ENSPMJG00000001826) #24	CCR10 (ENSPMJG00000001833) #25	CNTNAP1 (ENSPMJG00000001837) #26	EZH1 (ENSPMJG00000001871) #27	RAMP2 (ENSPMJG00000001880) #28	VPS25 (ENSPMJG00000001883) #29	WNK4 (ENSPMJG00000001981) #30	ENSPMJG00000001992 #31	CNTD1 (ENSPMJG00000001998) #32	ENSPMJG00000002006 #33	PSME3 (ENSPMJG00000002010) #34	ENSPMJG00000002012 #36	ENSPMJG00000002015 #36	G6PC1 (ENSPMJG00000002017) #37	AARSD1 (ENSPMJG00000002104)
Passeriformes_d	ANCESTRAL SPECIES	25	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00940000164828	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.b ##11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000167154	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.c.a.a.a #36	ENSGT00950000183207.b.d #36	ENSGT00950000183150.a.a.d.d #37	ENSGT00940000156241	ENSGT00960000193113
Flycatcher	MODERN SPECIES	19	ENSFALG00000015235	RAB5C (ENSFALG00000024567)	KCNH4 (ENSFALG00000000661) #7	HCRT (ENSFALG00000015255) #8	ENSFALG00000000663	ENSFALG00000000667 ##11	STAT3 (ENSFALG00000000674) #13	CAVIN1 (ENSFALG00000000675) #14	ATP6V0A1 (ENSFALG00000000677) #15	HSD17B1 (ENSFALG00000000686) #17	NAGLU (ENSFALG00000025595) #16	COASY (ENSFALG00000000689) #18	MLX (ENSFALG00000000692) #19	PSMC3IP (ENSFALG00000023055) #20	ENSFALG00000023962	TUBG1 (ENSFALG00000000706) #22	PLEKHH3 (ENSFALG00000000709) #24	CCR10 (ENSFALG00000027084) #25	CNTNAP1 (ENSFALG00000000712) #26	EZH1 (ENSFALG00000000715) #27	RAMP2 (ENSFALG00000000719) #28	VPS25 (ENSFALG00000028719) #29	WNK4 (ENSFALG00000000723) #30	CNTD1 (ENSFALG00000025771) #32	ENSFALG00000000729 #33	PSME3 (ENSFALG00000000739) #34	ENSFALG00000000748 #36	AARSD1 (ENSFALG00000000757)	PTGES3L (ENSFALG00000024118)	RUNDC1 (ENSFALG00000000768)	RPL27 (ENSFALG00000000772)
Passeriformes_g	ANCESTRAL SPECIES	26	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00940000164828	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.b ##11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000167154	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00950000186402	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.c.a.a.a #36	ENSGT00950000183207.b.d #36	ENSGT00950000183150.a.a.d.d #37	ENSGT00940000156241	ENSGT00960000193113
Medium ground finch	MODERN SPECIES	259	ENSGFOG00000004834	ENSGFOG00000004822	RAB5C (ENSGFOG00000004816)	ENSGFOG00000004807	KCNH4 (ENSGFOG00000004736) #7	ENSGFOG00000004705	ENSGFOG00000004677 ##11	STAT3 (ENSGFOG00000004641) #13	CAVIN1 (ENSGFOG00000004630) #14	ATP6V0A1 (ENSGFOG00000004568) #15	NAGLU (ENSGFOG00000004537) #16	COASY (ENSGFOG00000004465) #18	MLX (ENSGFOG00000004430) #19	PSMC3IP (ENSGFOG00000004406) #20	ENSGFOG00000004393	TUBG1 (ENSGFOG00000004374) #22	PLEKHH3 (ENSGFOG00000004365) #24	EZH1 (ENSGFOG00000004239) #27	RAMP2 (ENSGFOG00000004233) #28	CNTD1 (ENSGFOG00000004192) #32	ENSGFOG00000004134 #33	PSME3 (ENSGFOG00000004120) #34	ENSGFOG00000004106 #36	ENSGFOG00000004085 #36	G6PC1 (ENSGFOG00000004064) #37	AARSD1 (ENSGFOG00000004037)	PTGES3L (ENSGFOG00000004023)	RUNDC1 (ENSGFOG00000004010)	ENSGFOG00000004001	IFI35 (ENSGFOG00000003987)	ENSGFOG00000003980
Passeroidea	ANCESTRAL SPECIES	32	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00940000164828	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.b ##11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000167154	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00950000186402	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.c.a.a.a #36	ENSGT00950000183207.b.d #36	ENSGT00950000183150.a.a.d.d #37	ENSGT00940000156241	ENSGT00960000193113
Common canary	MODERN SPECIES	42	OR6P1 (ENSSCAG00000006227)	ENSSCAG00000006239	ENSSCAG00000006245	ENSSCAG00000006262	ENSSCAG00000006266	ENSSCAG00000006270	MPP3 (ENSSCAG00000006273)	ENSSCAG00000006279	DUSP3 (ENSSCAG00000006285)	ATP6V0A1 (ENSSCAG00000006294) #15	NAGLU (ENSSCAG00000006308) #16	HSD17B1 (ENSSCAG00000006320) #17	MLX (ENSSCAG00000006325) #19	PSMC3IP (ENSSCAG00000006336) #20	ENSSCAG00000006340	TUBG1 (ENSSCAG00000006366) #22	PLEKHH3 (ENSSCAG00000006606) #24	CCR10 (ENSSCAG00000006608) #25	EZH1 (ENSSCAG00000006635) #27	VPS25 (ENSSCAG00000006642) #29	RAMP2 (ENSSCAG00000006645) #28	CNTD1 (ENSSCAG00000006684) #32	ENSSCAG00000006688 #33	PSME3 (ENSSCAG00000006703) #34	ENSSCAG00000006727 #36	ENSSCAG00000006731 #36	G6PC1 (ENSSCAG00000006737) #37	ENSSCAG00000006739	ENSSCAG00000006742	PTGES3L (ENSSCAG00000006743)	RUNDC1 (ENSSCAG00000006747)
Zebra finch	MODERN SPECIES	20	DHX58 (ENSTGUG00000002516)	KAT2A (ENSTGUG00000002531)	RAB5C (ENSTGUG00000002554)	KCNH4 (ENSTGUG00000002564) #7	ENSTGUG00000002570	GHDC (ENSTGUG00000024807) #9	STAT3 (ENSTGUG00000002600) #13	CAVIN1 (ENSTGUG00000002659) #14	ATP6V0A1 (ENSTGUG00000002661) #15	NAGLU (ENSTGUG00000002677) #16	HSD17B1 (ENSTGUG00000002682) #17	COASY (ENSTGUG00000002686) #18	MLX (ENSTGUG00000002694) #19	PSMC3IP (ENSTGUG00000002707) #20	ENSTGUG00000002719	TUBG1 (ENSTGUG00000002727) #22	PLEKHH3 (ENSTGUG00000002734) #24	CCR10 (ENSTGUG00000024060) #25	CNTNAP1 (ENSTGUG00000002735) #26	EZH1 (ENSTGUG00000002758) #27	RAMP2 (ENSTGUG00000002774) #28	VPS25 (ENSTGUG00000024425) #29	ENSTGUG00000002780	CNTD1 (ENSTGUG00000002781) #32	ENSTGUG00000002784 #33	PSME3 (ENSTGUG00000002797) #34	ENSTGUG00000002817 #36	ENSTGUG00000022939 #36	ENSTGUG00000026548 #36	AARSD1 (ENSTGUG00000002837)	PTGES3L (ENSTGUG00000028812)
African ostrich	MODERN SPECIES	575									STAT3 (ENSSCUG00000012297) #13	CAVIN1 (ENSSCUG00000012301) #14	ATP6V0A1 (ENSSCUG00000012307) #15	NAGLU (ENSSCUG00000012310) #16	MLX (ENSSCUG00000012312) #19	PSMC3IP (ENSSCUG00000012313) #20	ENSSCUG00000012315	TUBG1 (ENSSCUG00000012318) #22
Australian saltwater crocodile	MODERN SPECIES	61	ENSCPRG00005005788	RAB5C (ENSCPRG00005005797)	KCNH4 (ENSCPRG00005005817) #7	HCRT (ENSCPRG00005005829) #8	ENSCPRG00005005836	GHDC (ENSCPRG00005005850) #9	ENSCPRG00005005875 ##11	STAT3 (ENSCPRG00005006013) #13	CAVIN1 (ENSCPRG00005006024) #14	ATP6V0A1 (ENSCPRG00005006206) #15	ENSCPRG00005007564	ADAM11 (ENSCPRG00005007583)	MLX (ENSCPRG00005007730) #19	PSMC3IP (ENSCPRG00005007734) #20	ENSCPRG00005007739	TUBG1 (ENSCPRG00005007766) #22	PLEKHH3 (ENSCPRG00005008087) #24	CCR10 (ENSCPRG00005008098) #25	CNTNAP1 (ENSCPRG00005008108) #26	EZH1 (ENSCPRG00005008126) #27	ENSCPRG00005008139	RAMP2 (ENSCPRG00005008141) #28	WNK4 (ENSCPRG00005008144) #30	ENSCPRG00005008168 #33	PSME3 (ENSCPRG00005008179) #34	ENSCPRG00005008204 #36	ENSCPRG00005008207 #36	ENSCPRG00005008209 #36	ENSCPRG00005008220 #37	ENSCPRG00005008231 #37	AARSD1 (ENSCPRG00005008239)
Cryptodira	ANCESTRAL SPECIES	23	ENSGT00670000098179	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT01080000257420.C.b.b.a.a #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00940000154014.b.a	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000165444	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000167154	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00950000185523	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.c.a #36	ENSGT00950000183207.b.d #36	ENSGT00950000183150.a.a.d.d.a #37
Testudinoidea	ANCESTRAL SPECIES	19	ENSGT00670000098179.q	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT01080000257420.C.b.b.b ##11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00940000154014.b.a	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000165444	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000167154	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825.a #26	ENSGT00940000156604 #27	ENSGT00950000185523	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.c.a.d #36	ENSGT00950000183207.b.d #36	ENSGT00950000183150.a.a.d.d.a #37
Testudinidae	ANCESTRAL SPECIES	24	ENSGT00390000014272 #8	ENSGT00940000164828	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b.b ##11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00940000154014.b.a	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000165444	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000167154	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825.a #26	ENSGT00940000156604 #27	ENSGT00950000185523	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.c.a.c.a #36	ENSGT00950000183207.b.d #36	ENSGT00950000183150.a.a.d.d.a #37
Goode s thornscrub tortoise	MODERN SPECIES	15	HCRT (ENSGEVG00005008288) #8	ENSGEVG00005008256	GHDC (ENSGEVG00005008040) #9	ENSGEVG00005007909 ##11	STAT3 (ENSGEVG00005007794) #13	CAVIN1 (ENSGEVG00005007765) #14	ATP6V0A1 (ENSGEVG00005007730) #15	ENSGEVG00005007698	NAGLU (ENSGEVG00005007659) #16	HSD17B1 (ENSGEVG00005007547) #17	COASY (ENSGEVG00005007500) #18	ENSGEVG00005007465	MLX (ENSGEVG00005007441) #19	PSMC3IP (ENSGEVG00005007418) #20	ENSGEVG00005007354	TUBG1 (ENSGEVG00005007322) #22	PLEKHH3 (ENSGEVG00005007268) #24	CCR10 (ENSGEVG00005007246) #25	CNTNAP1 (ENSGEVG00005006204) #26	EZH1 (ENSGEVG00005005868) #27	ENSGEVG00005005820	RAMP2 (ENSGEVG00005005793) #28	VPS25 (ENSGEVG00005005765) #29	WNK4 (ENSGEVG00005005653) #30	COA3 (ENSGEVG00005005515) #31	CNTD1 (ENSGEVG00005005460) #32	ENSGEVG00005005431 #33	PSME3 (ENSGEVG00005005387) #34	ENSGEVG00005005361 #36	ENSGEVG00005005339 #36	ENSGEVG00005005300 #37
Abingdon island giant tortoise	MODERN SPECIES	269				ENSCABG00000001432 ##11	STAT3 (ENSCABG00000001427) #13	CAVIN1 (ENSCABG00000001423) #14	ATP6V0A1 (ENSCABG00000001415) #15	ENSCABG00000001411	NAGLU (ENSCABG00000001355) #16	HSD17B1 (ENSCABG00000001342) #17	COASY (ENSCABG00000001339) #18	ENSCABG00000001334	MLX (ENSCABG00000001332) #19	PSMC3IP (ENSCABG00000001329) #20	ENSCABG00000001079	TUBG1 (ENSCABG00000000649) #22	PLEKHH3 (ENSCABG00000000612) #24	ENSCABG00000000610 #25	CNTNAP1 (ENSCABG00000000604) #26	EZH1 (ENSCABG00000000395) #27	ENSCABG00000000363	RAMP2 (ENSCABG00000000351) #28	VPS25 (ENSCABG00000000339) #29	WNK4 (ENSCABG00000000300) #30	COA3 (ENSCABG00000000274) #31	CNTD1 (ENSCABG00000000253) #32	ENSCABG00000000231 #33	PSME3 (ENSCABG00000000153) #34	ENSCABG00000000116 #36	ENSCABG00000000088 #36	ENSCABG00000000056 #36
Emydidae	ANCESTRAL SPECIES	26	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT01080000257420.C.b.b.b.a ##11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00940000154014.b.a	ENSGT00390000005900 #16	ENSGT00940000160415 #17	ENSGT00550000075078 #18	ENSGT00940000165444	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000167154	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825.a #26	ENSGT00940000156604 #27	ENSGT00950000185523	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.c.a.d #36	ENSGT00950000183207.b.d #36	ENSGT00950000183150.a.a.d.d.a #37
Three-toed box turtle	MODERN SPECIES	91	ENSTMTG00000005711	DHX58 (ENSTMTG00000005685)	RAB5C (ENSTMTG00000005672)	KCNH4 (ENSTMTG00000005636) #7	STAT3 (ENSTMTG00000005536) #13	CAVIN1 (ENSTMTG00000005507) #14	ATP6V0A1 (ENSTMTG00000005480) #15	ENSTMTG00000005464	NAGLU (ENSTMTG00000005450) #16	HSD17B1 (ENSTMTG00000005369) #17	ENSTMTG00000005346 #18	ENSTMTG00000005335	MLX (ENSTMTG00000005326) #19	PSMC3IP (ENSTMTG00000005314) #20	ENSTMTG00000005296	TUBG1 (ENSTMTG00000005269) #22	PLEKHH3 (ENSTMTG00000005236) #24	CCR10 (ENSTMTG00000005227) #25	CNTNAP1 (ENSTMTG00000003233) #26	ENSTMTG00000003070	RAMP2 (ENSTMTG00000003063) #28	VPS25 (ENSTMTG00000015254) #29	WNK4 (ENSTMTG00000015233) #30	COA3 (ENSTMTG00000015224) #31	CNTD1 (ENSTMTG00000015210) #32	ENSTMTG00000015198 #33	PSME3 (ENSTMTG00000015178) #34	ENSTMTG00000015172 #36	ENSTMTG00000015165 #36	ENSTMTG00000015152 #37	AARSD1 (ENSTMTG00000015136)
painted turtle	MODERN SPECIES	935								ENSCPBG00000016667 ##11	STAT3 (ENSCPBG00000016591) #13	CAVIN1 (ENSCPBG00000016584) #14	ATP6V0A1 (ENSCPBG00000016551) #15	ENSCPBG00000016539	MLX (ENSCPBG00000016534) #19	PSMC3IP (ENSCPBG00000016526) #20	ENSCPBG00000016521	TUBG1 (ENSCPBG00000016518) #22	PLEKHH3 (ENSCPBG00000016513) #24	CCR10 (ENSCPBG00000016511) #25	ENSCPBG00000016508 #26	RAMP2 (ENSCPBG00000016506) #28	VPS25 (ENSCPBG00000016501) #29	WNK4 (ENSCPBG00000016498) #30	COA3 (ENSCPBG00000016496) #31	CNTD1 (ENSCPBG00000016494) #32	ENSCPBG00000016490 #33	PSME3 (ENSCPBG00000016487) #34	ENSCPBG00000016485 #36	ENSCPBG00000016483 #36	ENSCPBG00000016306 #37	ENSCPBG00000016299 #37	ENSCPBG00000016296 #37
Chinese turtle	MODERN SPECIES	1250											NAGLU (ENSPSIG00000015225) #16	COASY (ENSPSIG00000015349) #18	MLX (ENSPSIG00000015412) #19	PSMC3IP (ENSPSIG00000015707) #20	ENSPSIG00000016227	TUBG1 (ENSPSIG00000016417) #22	CNTNAP1 (ENSPSIG00000016828) #26	EZH1 (ENSPSIG00000017308) #27	RAMP2 (ENSPSIG00000004357) #28	VPS25 (ENSPSIG00000004409) #29	WNK4 (ENSPSIG00000004415) #30	ENSPSIG00000004560 #33	ENSPSIG00000004661 #36	G6PC1 (ENSPSIG00000004917) #37	AARSD1 (ENSPSIG00000004931)	RUNDC1 (ENSPSIG00000004946)	RPL27 (ENSPSIG00000004952)	IFI35 (ENSPSIG00000005071)	VAT1 (ENSPSIG00000005082)	RND2 (ENSPSIG00000005193)	ENSPSIG00000005237
Anura	ANCESTRAL SPECIES	15	ENSGT00940000154971	ENSGT00940000156363 #7	ENSGT00390000014272 #8	ENSGT00940000164828	ENSGT00390000016401 #9	ENSGT01080000257420.C.b.b #11	ENSGT01050000244905.B #13	ENSGT00950000182910.b #14	ENSGT00950000182881.a.a.b #15	ENSGT00940000154014.b.a	ENSGT00550000075078 #18	ENSGT00940000165444	ENSGT00940000157377 #19	ENSGT00390000006890 #20	ENSGT00940000161349 #21	ENSGT00940000156957 #22	ENSGT00940000159764 #24	ENSGT01030000234667.a.a.a.a.a #25	ENSGT00940000160825 #26	ENSGT00940000156604 #27	ENSGT00940000160264 #28	ENSGT00390000014892 #29	ENSGT00940000159871 #30	ENSGT00390000016262 #31	ENSGT00440000033966 #32	ENSGT00390000008164 #33	ENSGT00950000183098.a #34	ENSGT00950000183207.b.a #36	ENSGT00950000183150.a.a.g.a #37	ENSGT00950000183150.a.a.g.b #37	ENSGT00940000156241
Leishan spiny toad	MODERN SPECIES	3	ENSLLEG00000018410	ENSLLEG00000018461 #36	ENSLLEG00000018558	ENSLLEG00000018583	ENSLLEG00000018604	ENSLLEG00000018626	ENSLLEG00000018688 #36	NAGLU (ENSLLEG00000018857) #16	ENSLLEG00000019252	HSD17B1 (ENSLLEG00000019269) #17	ENSLLEG00000019318	ENSLLEG00000019356	ENSLLEG00000019378	MLX (ENSLLEG00000019449) #19	ENSLLEG00000008503 #20	TUBG1 (ENSLLEG00000008836) #22	PLEKHH3 (ENSLLEG00000009053) #24	ENSLLEG00000009191	ENSLLEG00000009214	CCR10 (ENSLLEG00000009242) #25	CNTNAP1 (ENSLLEG00000009307) #26	ENSLLEG00000009784	ENSLLEG00000009802	EZH1 (ENSLLEG00000009862) #27	VPS25 (ENSLLEG00000010361) #29	RAMP2 (ENSLLEG00000010415) #28	WNK4 (ENSLLEG00000010440) #30	ENSLLEG00000010505	ENSLLEG00000010525	ENSLLEG00000010543	COA3 (ENSLLEG00000010558) #31
Frog	MODERN SPECIES	1	tha1p (ENSXETG00000009985)	birc5l (ENSXETG00000009983)	ptrh1 (ENSXETG00000009980)	cog1 (ENSXETG00000009979)	ENSXETG00000036642	ENSXETG00000044963	sstr2 (ENSXETG00000045408)	slc39a11 (ENSXETG00000009976)	ENSXETG00000043229	sox9 (ENSXETG00000035507)	kcnj2 (ENSXETG00000042973)	kcnj16 (ENSXETG00000045680)	ENSXETG00000046932	map2k6 (ENSXETG00000022954)	retreg3 (ENSXETG00000014893) #21	tubg1 (ENSXETG00000014898) #22	ENSXETG00000041860	nploc4 (ENSXETG00000015038)	fscn2 (ENSXETG00000015030)	faap100 (ENSXETG00000015035)	actg1 (ENSXETG00000027641)	bahcc1 (ENSXETG00000015028)	ENSXETG00000042421	ENSXETG00000046582	slc38a10 (ENSXETG00000015401)	ENSXETG00000037346	tepsin (ENSXETG00000015400)	cep131 (ENSXETG00000016930)	abo2 (ENSXETG00000015399)	myadml2 (ENSXETG00000005379)	pycr1 (ENSXETG00000005381)
Coelacanth	MODERN SPECIES	415						COA3 (ENSLACG00000022554) #31	WNK4 (ENSLACG00000001312) #30	ENSLACG00000005103	ENSLACG00000005454 #28	ENSLACG00000005969 #28	COASY (ENSLACG00000007156) #18	si:ch73-141c7.1 (ENSLACG00000007656)	MLX (ENSLACG00000007918) #19	PSMC3IP (ENSLACG00000008428) #20	RETREG3 (ENSLACG00000008636) #21	TUBG1 (ENSLACG00000008901) #22	CCR10 (ENSLACG00000011653) #25	CNTNAP1 (ENSLACG00000012255) #26	EZH1 (ENSLACG00000012773) #27	CASC3 (ENSLACG00000013200)	RAPGEFL1 (ENSLACG00000013841)	ENSLACG00000014000	GRB7 (ENSLACG00000014098)	ERBB2 (ENSLACG00000014945)	PGAP3 (ENSLACG00000015545)	PNMT (ENSLACG00000015665)	ENSLACG00000015718	ENSLACG00000015811	zgc:91968 (ENSLACG00000015850)	STARD3 (ENSLACG00000015932)	PPP1R1B (ENSLACG00000016105)