Percora_a	ANCESTRAL SPECIES	3	ENSGT00940000162433	ENSGT00940000153137.a.a #7	ENSGT00390000016475 #8	ENSGT00390000009228.b #9	ENSGT00940000156054 #10	ENSGT00940000160024 #11	ENSGT00940000161265 #12	ENSGT00940000154405.a.b #13	ENSGT00940000154405.a.a #14	ENSGT00940000161999 #15	ENSGT00940000162772 #17	ENSGT00940000158365 #18	ENSGT00940000157367 #19	ENSGT00390000017606.a.a.j.l #20	ENSGT00950000182935.B.b.c #21	ENSGT00510000048276 #22	ENSGT00390000008221 #23	ENSGT01030000234887	ENSGT00390000013127.a #24	ENSGT00530000063801.a.c #25	ENSGT00390000016774 #26	ENSGT00940000158594 #27	ENSGT00940000161730 #28	ENSGT00940000157307 #29	ENSGT00940000160998 #30	ENSGT00940000155813 #31	ENSGT00950000183122.C #32	ENSGT00940000157282 #33	ENSGT00950000182979.a.b.b.a #34	ENSGT00940000154272.B #35	ENSGT00920000149129 #36
Bovidae	ANCESTRAL SPECIES	3	ENSGT00940000153137.a.a #7	ENSGT00390000016475 #8	ENSGT00390000009228.b #9	ENSGT00940000156054 #10	ENSGT00940000160024 #11	ENSGT00940000161265 #12	ENSGT00940000154405.a.b #13	ENSGT00940000154405.a.a #14	ENSGT00940000161999 #15	ENSGT00390000002407.d.x #16	ENSGT00940000162772 #17	ENSGT00940000158365 #18	ENSGT00940000157367 #19	ENSGT00390000017606.a.a.j.l #20	ENSGT00950000182935.B.b.c #21	ENSGT00510000048276 #22	ENSGT00390000008221 #23	ENSGT01030000234887	ENSGT00390000013127.a #24	ENSGT00530000063801.a.c #25	ENSGT00390000016774 #26	ENSGT00940000158594 #27	ENSGT00940000161730 #28	ENSGT00940000157307 #29	ENSGT00940000160998 #30	ENSGT00940000155813 #31	ENSGT00950000183122.C #32	ENSGT00940000157282 #33	ENSGT00950000182979.a.b.b.a #34	ENSGT00940000154272.B #35	ENSGT00920000149129 #36
Caprinae	ANCESTRAL SPECIES		ENSGT00940000153137.a.a #7	ENSGT00390000016475 #8	ENSGT00390000009228.b #9	ENSGT00940000156054 #10	ENSGT00940000160024 #11	ENSGT00940000161265 #12	ENSGT00940000154405.a.b #13	ENSGT00940000154405.a.a #14	ENSGT00940000161999 #15	ENSGT00390000002407.d.x #16	ENSGT00940000162772 #17	ENSGT00940000158365 #18	ENSGT00940000157367 #19	ENSGT00390000017606.a.a.j.l #20	ENSGT00950000182935.B.b.c #21	ENSGT00510000048276 #22	ENSGT00390000008221 #23	ENSGT01030000234887	ENSGT00390000013127.a #24	ENSGT00530000063801.a.c #25	ENSGT00390000016774 #26	ENSGT00940000158594 #27	ENSGT00940000161730 #28	ENSGT00940000157307 #29	ENSGT00940000160998 #30	ENSGT00940000155813 #31	ENSGT00950000183122.C #32	ENSGT00940000157282 #33	ENSGT00950000182979.a.b.b.a #34	ENSGT00940000154272.B #35	ENSGT00920000149129 #36
Goat	MODERN SPECIES	24	ENSCHIG00000014892 #7	TOMM22 (ENSCHIG00000026278) #8	JOSD1 (ENSCHIG00000021625) #9	GTPBP1 (ENSCHIG00000015505) #10	SUN2 (ENSCHIG00000011254) #11	DNAL4 (ENSCHIG00000018875) #12	NPTXR (ENSCHIG00000026587) #13	CBX6 (ENSCHIG00000025856) #14	ENSCHIG00000012694 #15	ENSCHIG00000014670 #16	ENSCHIG00000026580 #17	CBX7 (ENSCHIG00000023361) #18	PDGFB (ENSCHIG00000025693) #19	ENSCHIG00000025454 #20	SYNGR1 (ENSCHIG00000018332) #21	TAB1 (ENSCHIG00000014927) #22	MGAT3 (ENSCHIG00000008357) #23	MIEF1 (ENSCHIG00000017368) #24	ATF4 (ENSCHIG00000014886) #25	RPS19BP1 (ENSCHIG00000020651) #26	CACNA1I (ENSCHIG00000021978) #27	ENTHD1 (ENSCHIG00000019751) #28	GRAP2 (ENSCHIG00000015296) #29	FAM83F (ENSCHIG00000026060) #30	TNRC6B (ENSCHIG00000003491) #31	ENSCHIG00000016369 #32	SGSM3 (ENSCHIG00000018086) #33	MRTFA (ENSCHIG00000016119) #34	MCHR1 (ENSCHIG00000022709) #35	SLC25A17 (ENSCHIG00000026918) #36	ENSCHIG00000017681 #37
Rambouillet Sheep	MODERN SPECIES	19	FAM227A (ENSOARG00020010830)	CBY1 (ENSOARG00020010987) #7	TOMM22 (ENSOARG00020011046) #8	JOSD1 (ENSOARG00020011101) #9	GTPBP1 (ENSOARG00020011180) #10	SUN2 (ENSOARG00020011347) #11	DNAL4 (ENSOARG00020011506) #12	NPTXR (ENSOARG00020011569) #13	CBX6 (ENSOARG00020011626) #14	APOBEC3Z1 (ENSOARG00020011689) #15	APOBEC3Z3 (ENSOARG00020011837) #17	CBX7 (ENSOARG00020012086) #18	PDGFB (ENSOARG00020012236) #19	RPL3 (ENSOARG00020012384) #20	SYNGR1 (ENSOARG00020012529) #21	TAB1 (ENSOARG00020012878) #22	MGAT3 (ENSOARG00020013113) #23	ENSOARG00020013145	MIEF1 (ENSOARG00020013174) #24	ATF4 (ENSOARG00020013226) #25	RPS19BP1 (ENSOARG00020013278) #26	CACNA1I (ENSOARG00020013637) #27	ENTHD1 (ENSOARG00020023243) #28	GRAP2 (ENSOARG00020023284) #29	FAM83F (ENSOARG00020023308) #30	TNRC6B (ENSOARG00020023375) #31	ADSL (ENSOARG00020023696) #32	ENSOARG00020023873 #33	ENSOARG00020023916 #33	MRTFA (ENSOARG00020023983) #34	MCHR1 (ENSOARG00020024030) #35
Bovinae	ANCESTRAL SPECIES	10	ENSGT00940000153137.a.a #7	ENSGT00390000016475 #8	ENSGT00390000009228.b #9	ENSGT00940000156054 #10	ENSGT00940000160024 #11	ENSGT00940000161265 #12	ENSGT00940000154405.a.b #13	ENSGT00940000154405.a.a #14	ENSGT00940000161999 #15	ENSGT00940000167817	ENSGT00940000162772 #17	ENSGT00940000158365 #18	ENSGT00940000157367 #19	ENSGT00390000017606.a.a.j.l #20	ENSGT00950000182935.B.b.c #21	ENSGT00510000048276 #22	ENSGT00390000008221 #23	ENSGT00390000013127.a #24	ENSGT00530000063801.a.c #25	ENSGT00390000016774 #26	ENSGT00940000158594 #27	ENSGT00940000161730 #28	ENSGT00940000157307 #29	ENSGT00940000160998 #30	ENSGT00940000155813 #31	ENSGT00950000183122.C #32	ENSGT00940000157282 #33	ENSGT00950000182979.a.b.b.a #34	ENSGT00940000154272.B #35	ENSGT00920000149129 #36	ENSGT00390000001347.v.n.a #37
Bos	ANCESTRAL SPECIES	2	ENSGT00940000153137.a.a #7	ENSGT00390000016475 #8	ENSGT00390000009228.b #9	ENSGT00940000156054 #10	ENSGT00940000160024 #11	ENSGT00940000161265 #12	ENSGT00940000154405.a.b #13	ENSGT00940000154405.a.a #14	ENSGT00940000161999 #15	ENSGT00940000167817	ENSGT00940000162772 #17	ENSGT00940000158365 #18	ENSGT00940000157367 #19	ENSGT00390000017606.a.a.j.l #20	ENSGT00950000182935.B.b.c #21	ENSGT00510000048276 #22	ENSGT00390000008221 #23	ENSGT00390000013127.a #24	ENSGT00530000063801.a.c #25	ENSGT00390000016774 #26	ENSGT00940000158594 #27	ENSGT00940000161730 #28	ENSGT00940000157307 #29	ENSGT00940000160998 #30	ENSGT00940000155813 #31	ENSGT00950000183122.C #32	ENSGT00940000157282 #33	ENSGT00950000182979.a.b.b.a #34	ENSGT00940000154272.B #35	ENSGT00920000149129 #36	ENSGT00950000182891.a.a.b.b
Bos_a	ANCESTRAL SPECIES	24	ENSGT00940000153137.a.a #7	ENSGT00390000016475 #8	ENSGT00390000009228.b #9	ENSGT00940000156054 #10	ENSGT00940000160024 #11	ENSGT00940000166105	ENSGT00940000154405.a.b #13	ENSGT00940000154405.a.a #14	ENSGT00940000161999 #15	ENSGT00940000167817	ENSGT00940000162772 #17	ENSGT00940000158365 #18	ENSGT00940000157367 #19	ENSGT00390000017606.a.a.j.l #20	ENSGT00950000182935.B.b.c #21	ENSGT00510000048276 #22	ENSGT00390000008221 #23	ENSGT00390000013127.a #24	ENSGT00530000063801.a.c #25	ENSGT00390000016774 #26	ENSGT00940000158594 #27	ENSGT00940000161730 #28	ENSGT00940000157307 #29	ENSGT00940000160998 #30	ENSGT00940000155813 #31	ENSGT00950000183122.C #32	ENSGT00940000157282 #33	ENSGT00950000182979.a.b.b.a #34	ENSGT00940000154272.B #35	ENSGT00920000149129 #36	ENSGT00950000182891.a.a.b.b
Domestic yak	MODERN SPECIES	24	TOMM22 (ENSBGRG00000002734) #8	JOSD1 (ENSBGRG00000002758) #9	GTPBP1 (ENSBGRG00000002786) #10	SUN2 (ENSBGRG00000002838) #11	ENSBGRG00000002912	NPTXR (ENSBGRG00000002926) #13	CBX6 (ENSBGRG00000002934) #14	ENSBGRG00000002965 #15	ENSBGRG00000002985 #16	ENSBGRG00000002993 #17	APOBEC3Z3 (ENSBGRG00000003021) #17	CBX7 (ENSBGRG00000003055) #18	PDGFB (ENSBGRG00000003093) #19	RPL3 (ENSBGRG00000003124) #20	ENSBGRG00000003220 #21	TAB1 (ENSBGRG00000003258) #22	MGAT3 (ENSBGRG00000003310) #23	MIEF1 (ENSBGRG00000003330) #24	ENSBGRG00000003347 #25	RPS19BP1 (ENSBGRG00000003370) #26	CACNA1I (ENSBGRG00000003629) #27	ENTHD1 (ENSBGRG00000006865) #28	GRAP2 (ENSBGRG00000006892) #29	FAM83F (ENSBGRG00000006932) #30	TNRC6B (ENSBGRG00000007053) #31	ADSL (ENSBGRG00000008001) #32	SGSM3 (ENSBGRG00000008503) #33	MRTFA (ENSBGRG00000008675) #34	MCHR1 (ENSBGRG00000009343) #35	SLC25A17 (ENSBGRG00000006056) #36	ENSBGRG00000006125
Wild yak	MODERN SPECIES	1096	CBY1 (ENSBMUG00000026392) #7	TOMM22 (ENSBMUG00000026394) #8	JOSD1 (ENSBMUG00000026395) #9	GTPBP1 (ENSBMUG00000000156) #10	SUN2 (ENSBMUG00000000201) #11	ENSBMUG00000000219	NPTXR (ENSBMUG00000000235) #13	CBX6 (ENSBMUG00000000256) #14	ENSBMUG00000000282 #15	ENSBMUG00000000336	ENSBMUG00000000388 #17	CBX7 (ENSBMUG00000000416) #18	PDGFB (ENSBMUG00000000434) #19	RPL3 (ENSBMUG00000000471) #20	SYNGR1 (ENSBMUG00000000543) #21	TAB1 (ENSBMUG00000000592) #22	MGAT3 (ENSBMUG00000000609) #23	MIEF1 (ENSBMUG00000000625) #24	ATF4 (ENSBMUG00000000642) #25	RPS19BP1 (ENSBMUG00000000662) #26	CACNA1I (ENSBMUG00000002923) #27	ENTHD1 (ENSBMUG00000004072) #28	GRAP2 (ENSBMUG00000004086) #29	FAM83F (ENSBMUG00000004142) #30	TNRC6B (ENSBMUG00000004279) #31	ADSL (ENSBMUG00000004350) #32	SGSM3 (ENSBMUG00000004388) #33	MRTFA (ENSBMUG00000004489) #34	MCHR1 (ENSBMUG00000004634) #35	SLC25A17 (ENSBMUG00000004666) #36	ENSBMUG00000004674
Bos_b	ANCESTRAL SPECIES	30	ENSGT00940000153137.a.a #7	ENSGT00390000016475 #8	ENSGT00390000009228.b #9	ENSGT00940000156054 #10	ENSGT00940000160024 #11	ENSGT00940000161265 #12	ENSGT00940000154405.a.b #13	ENSGT00940000154405.a.a #14	ENSGT00940000161999 #15	ENSGT00940000167817	ENSGT00940000162772 #17	ENSGT00940000158365 #18	ENSGT00940000157367 #19	ENSGT00390000017606.a.a.j.l #20	ENSGT00950000182935.B.b.c #21	ENSGT00510000048276 #22	ENSGT00390000008221 #23	ENSGT00390000013127.a #24	ENSGT00530000063801.a.c #25	ENSGT00390000016774 #26	ENSGT00940000158594 #27	ENSGT00940000161730 #28	ENSGT00940000157307 #29	ENSGT00940000160998 #30	ENSGT00940000155813 #31	ENSGT00950000183122.C #32	ENSGT00940000157282 #33	ENSGT00950000182979.a.b.b.a #34	ENSGT00940000154272.B #35	ENSGT00920000149129 #36	ENSGT00950000182891.a.a.b.b
Hybrid Bos Indicus	MODERN SPECIES	24	ENSBIXG00005004713 #8	ENSBIXG00005027362	GTPBP1 (ENSBIXG00005027435) #10	SUN2 (ENSBIXG00005027478) #11	ENSBIXG00005004740	NPTXR (ENSBIXG00005006624) #13	CBX6 (ENSBIXG00005027631) #14	ENSBIXG00005027653 #15	ENSBIXG00005027665	ENSBIXG00005027698 #17	ENSBIXG00005027734 #17	CBX7 (ENSBIXG00005027759) #18	PDGFB (ENSBIXG00005027799) #19	ENSBIXG00005027866 #20	SYNGR1 (ENSBIXG00005027936) #21	TAB1 (ENSBIXG00005028001) #22	MGAT3 (ENSBIXG00005028028) #23	MIEF1 (ENSBIXG00005028051) #24	ATF4 (ENSBIXG00005028085) #25	RPS19BP1 (ENSBIXG00005028099) #26	CACNA1I (ENSBIXG00005004854) #27	ENTHD1 (ENSBIXG00005028278) #28	GRAP2 (ENSBIXG00005028301) #29	FAM83F (ENSBIXG00005004869) #30	TNRC6B (ENSBIXG00005028516) #31	ADSL (ENSBIXG00005028664) #32	SGSM3 (ENSBIXG00005028733) #33	ENSBIXG00005028750	MRTFA (ENSBIXG00005002283) #34	MCHR1 (ENSBIXG00005028885) #35	SLC25A17 (ENSBIXG00005005058) #36
Cow	MODERN SPECIES	24	FAM227A (ENSBTAG00000010573)	CBY1 (ENSBTAG00000006588) #7	TOMM22 (ENSBTAG00000010157) #8	GTPBP1 (ENSBTAG00000010324) #10	SUN2 (ENSBTAG00000003693) #11	DNAL4 (ENSBTAG00000049822) #12	NPTXR (ENSBTAG00000000109) #13	CBX6 (ENSBTAG00000046724) #14	APOBEC3Z1 (ENSBTAG00000037800) #15	ENSBTAG00000051824	APOBEC3H (ENSBTAG00000007755) #17	CBX7 (ENSBTAG00000007228) #18	PDGFB (ENSBTAG00000021697) #19	RPL3 (ENSBTAG00000003228) #20	SYNGR1 (ENSBTAG00000005765) #21	TAB1 (ENSBTAG00000019828) #22	MGAT3 (ENSBTAG00000012503) #23	MIEF1 (ENSBTAG00000017439) #24	ATF4 (ENSBTAG00000017462) #25	RPS19BP1 (ENSBTAG00000017463) #26	CACNA1I (ENSBTAG00000045610) #27	ENTHD1 (ENSBTAG00000000326) #28	GRAP2 (ENSBTAG00000015157) #29	FAM83F (ENSBTAG00000014247) #30	TNRC6B (ENSBTAG00000021076) #31	ADSL (ENSBTAG00000000077) #32	SGSM3 (ENSBTAG00000009624) #33	MRTFA (ENSBTAG00000002630) #34	MCHR1 (ENSBTAG00000004048) #35	SLC25A17 (ENSBTAG00000006200) #36	ENSBTAG00000054845
American bison	MODERN SPECIES	3130	CBY1 (ENSBBBG00000005188) #7	TOMM22 (ENSBBBG00000019653) #8	JOSD1 (ENSBBBG00000019642) #9	GTPBP1 (ENSBBBG00000019626) #10	SUN2 (ENSBBBG00000019604) #11	DNAL4 (ENSBBBG00000019565) #12	NPTXR (ENSBBBG00000019555) #13	ENSBBBG00000005287 #15	ENSBBBG00000005265	ENSBBBG00000005262 #17	ENSBBBG00000005258 #17	CBX7 (ENSBBBG00000005251) #18	PDGFB (ENSBBBG00000019475) #19	RPL3 (ENSBBBG00000008662) #20	SYNGR1 (ENSBBBG00000019431) #21	TAB1 (ENSBBBG00000005150) #22	NRIP1 (ENSBBBG00000019374)	ENSBBBG00000008359	HSPA13 (ENSBBBG00000005017)	ENSBBBG00000019304	RBM11 (ENSBBBG00000004976)	KCNK10 (ENSBBBG00000004964)	SPATA7 (ENSBBBG00000019203)	PTPN21 (ENSBBBG00000004909)	ENSBBBG00000004886	EML5 (ENSBBBG00000004874)	TTC8 (ENSBBBG00000018942)	ENSBBBG00000004701	ENSBBBG00000007006	EFCAB11 (ENSBBBG00000018753)	TDP1 (ENSBBBG00000018726)
Siberian musk deer	MODERN SPECIES	1247	FAM227A (ENSMMSG00000016242)	CBY1 (ENSMMSG00000016196) #7	TOMM22 (ENSMMSG00000016177) #8	JOSD1 (ENSMMSG00000016158) #9	GTPBP1 (ENSMMSG00000016125) #10	SUN2 (ENSMMSG00000016072) #11	DNAL4 (ENSMMSG00000016031) #12	NPTXR (ENSMMSG00000015982) #13	CBX6 (ENSMMSG00000015947) #14	ENSMMSG00000015829 #15	ENSMMSG00000015802 #17	CBX7 (ENSMMSG00000015769) #18	PDGFB (ENSMMSG00000015748) #19	ENSMMSG00000015685 #20	SYNGR1 (ENSMMSG00000015640) #21	TAB1 (ENSMMSG00000015603) #22	MGAT3 (ENSMMSG00000015591) #23	MIEF1 (ENSMMSG00000015569) #24	ENSMMSG00000015549 #25	RPS19BP1 (ENSMMSG00000015526) #26	CACNA1I (ENSMMSG00000015225) #27	ENTHD1 (ENSMMSG00000015164) #28	GRAP2 (ENSMMSG00000015134) #29	FAM83F (ENSMMSG00000015097) #30	TNRC6B (ENSMMSG00000014702) #31	ADSL (ENSMMSG00000014463) #32	SGSM3 (ENSMMSG00000014416) #33	MRTFA (ENSMMSG00000014290) #34	MCHR1 (ENSMMSG00000014255) #35	ENSMMSG00000014246	SLC25A17 (ENSMMSG00000014156) #36