Bovidae	ANCESTRAL SPECIES	22	ENSGT00940000160438 #9	ENSGT00940000165441	ENSGT00940000156118 #11	ENSGT00940000161902.a.a #12	ENSGT00940000155268 #13	ENSGT00390000008325.b.b #14	ENSGT00700000106212 #15	ENSGT00950000182878.b.a.c.a.a.b.p.b.a.a.b #16	ENSGT00940000157063 #17	ENSGT00860000135817	ENSGT00940000154977 #24	ENSGT00900000143784.a #19	ENSGT00900000143784.b ##19	ENSGT00940000156908 #20	ENSGT00390000011717.ee #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00950000182990.a.a.a.b.u.a.b #26	ENSGT00940000156130.b #27	ENSGT00940000159124 #28	ENSGT00940000158635 #29	ENSGT00940000156473 #30	ENSGT00940000158224 #31	ENSGT00940000159542 #32	ENSGT00390000001846 #34	ENSGT00940000167705	ENSGT00530000064276 #37	ENSGT00940000159419	ENSGT00390000004451	ENSGT01030000234597.a.b.b.e.a.a	ENSGT00940000157068
Caprinae	ANCESTRAL SPECIES	18	ENSGT00940000160438 #9	ENSGT00940000165441	ENSGT00940000156118 #11	ENSGT00940000161902.a.a #12	ENSGT00940000155268 #13	ENSGT00390000008325.b.b #14	ENSGT00700000106212 #15	ENSGT00950000182878.b.a.c.a.a.b.p.b.a.a.b #16	ENSGT00940000157063 #17	ENSGT00860000135817	ENSGT00940000154977 #24	ENSGT00900000143784.a #19	ENSGT00900000143784.b ##19	ENSGT00940000156908 #20	ENSGT00390000011717.ee #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00950000182990.a.a.a.b.u.a.b #26	ENSGT00940000156130.b #27	ENSGT00940000159124 #28	ENSGT00940000158635 #29	ENSGT00940000156473 #30	ENSGT00940000158224 #31	ENSGT00940000159542 #32	ENSGT00390000001846 #34	ENSGT00530000064276.b #37	ENSGT00940000159419	ENSGT00390000004451	ENSGT01030000234597.a.b.b.e.a.a	ENSGT00940000157068	ENSGT00390000001057
Rambouillet Sheep	MODERN SPECIES	25	ENSOARG00020009783 #7	EYA1 (ENSOARG00020009883) #8	MSC (ENSOARG00020011918) #9	ENSOARG00020011953 #10	TRPA1 (ENSOARG00020011975) #11	KCNB2 (ENSOARG00020012309) #12	ENSOARG00020012394 #13	SBSPON (ENSOARG00020012699) #14	ENSOARG00020012778 #15	ENSOARG00020012848 #16	RDH10 (ENSOARG00020012918) #17	ENSOARG00020013038 #18	ENSOARG00020013951 #19	UBE2W (ENSOARG00020013983) #20	ENSOARG00020014058 #21	TMEM70 (ENSOARG00020014121) #22	LY96 (ENSOARG00020014177) #23	ENSOARG00020014317 #24	ENSOARG00020014341 #25	ENSOARG00020014381 #26	JPH1 (ENSOARG00020014507) #27	GDAP1 (ENSOARG00020014639) #28	PI15 (ENSOARG00020014740) #29	CRISPLD1 (ENSOARG00020014832) #30	HNF4G (ENSOARG00020015145) #31	ZFHX4 (ENSOARG00020015358) #32	ENSOARG00020015601 #33	PEX2 (ENSOARG00020015627) #34	ENSOARG00020015710 #35	ENSOARG00020015780 #36	ENSOARG00020015830 #37
Goat	MODERN SPECIES	5	MSC (ENSCHIG00000013609) #9	ENSCHIG00000024344	TRPA1 (ENSCHIG00000012691) #11	ENSCHIG00000023691	ENSCHIG00000018448	TERF1 (ENSCHIG00000011775) #13	SBSPON (ENSCHIG00000025814) #14	C8orf89 (ENSCHIG00000022018) #15	ENSCHIG00000008256 ##16	RDH10 (ENSCHIG00000016596) #17	ENSCHIG00000012339	STAU2 (ENSCHIG00000012254) #24	ENSCHIG00000015884 ##19	UBE2W (ENSCHIG00000025248) #20	ELOC (ENSCHIG00000015198) #21	TMEM70 (ENSCHIG00000019890) #22	LY96 (ENSCHIG00000012530) #23	ENSCHIG00000017122 #26	JPH1 (ENSCHIG00000017967) #27	GDAP1 (ENSCHIG00000006756) #28	PI15 (ENSCHIG00000016089) #29	CRISPLD1 (ENSCHIG00000016652) #30	HNF4G (ENSCHIG00000001150) #31	ENSCHIG00000020169	ZFHX4 (ENSCHIG00000017123) #32	PEX2 (ENSCHIG00000011681) #34	ENSCHIG00000024972	ENSCHIG00000012572	ENSCHIG00000017797 #36	ENSCHIG00000026486	PKIA (ENSCHIG00000022780) #37
Bovinae	ANCESTRAL SPECIES	18	ENSGT01090000260093.a	ENSGT00950000182978.A.a.b.a #8	ENSGT00940000160438 #9	ENSGT00940000165441	ENSGT00940000156118 #11	ENSGT00940000161902.a.a #12	ENSGT00940000155268 #13	ENSGT00390000008325.b.b #14	ENSGT00940000154433.a.a	ENSGT00700000106212 #15	ENSGT00950000182878.b.a.c.a.a.b.p.b.a.a.b #16	ENSGT00940000157063 #17	ENSGT00940000154977 #24	ENSGT00940000156908 #20	ENSGT00390000011717.ee #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00950000182990.a.a.a.b.u.a.b #26	ENSGT00940000156130.b #27	ENSGT00940000159124 #28	ENSGT00940000158635 #29	ENSGT00940000156473 #30	ENSGT00940000158224 #31	ENSGT00940000159542 #32	ENSGT00390000001846 #34	ENSGT00940000167705	ENSGT00940000155221.k.a	ENSGT00530000064276 #37	ENSGT00940000159419	ENSGT00390000004451	ENSGT01030000234597.a.b.b.e.a.a
Bos	ANCESTRAL SPECIES	21	ENSGT00940000160438 #9	ENSGT00940000156118 #11	ENSGT00940000156297.h	ENSGT00940000161902.a.a #12	ENSGT01100000263481.n.a.b.a.b.b.a.b.a.a.b.a.a.b	ENSGT00940000155268 #13	ENSGT00390000008325.b.b #14	ENSGT00940000154433.a.a	ENSGT00700000106212 #15	ENSGT00950000182878.b.a.c.a.a.b.p.b.a.a.b #16	ENSGT00940000157063 #17	ENSGT00940000154977 #24	ENSGT00940000156908 #20	ENSGT01100000263481.n.a.a.b.b.b.b.a.b.a.a.a	ENSGT00390000011717.ee #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00950000182990.a.a.a.b.u.a.b #26	ENSGT00940000156130.b #27	ENSGT00940000159124 #28	ENSGT00940000158635 #29	ENSGT00940000156473 #30	ENSGT00940000158224 #31	ENSGT00940000159542 #32	ENSGT00390000001846 #34	ENSGT00940000167705	ENSGT00940000155221.k.a	ENSGT00530000064276 #37	ENSGT00940000159419	ENSGT00390000004451	ENSGT01030000234597.a.b.b.e.a.a
Bos_b	ANCESTRAL SPECIES	25	ENSGT00940000160438 #9	ENSGT00940000156118 #11	ENSGT00940000156297.h	ENSGT00940000161902.a.a #12	ENSGT01100000263481.n.a.b.a.b.b.a.b.a.a.b.a.a.b	ENSGT00940000155268 #13	ENSGT00390000008325.b.b #14	ENSGT00940000154433.a.a	ENSGT00700000106212 #15	ENSGT00950000182878.b.a.c.a.a.b.p.b.a.a.b #16	ENSGT00940000157063 #17	ENSGT00940000154977 #24	ENSGT00940000156908 #20	ENSGT01100000263481.n.a.a.b.b.b.b.a.b.a.a.a	ENSGT00390000011717.ee #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT01100000263481.n.a.a.a.a.a.a.a.b.b.a.a	ENSGT00950000182990.a.a.a.b.u.a.b #26	ENSGT00940000156130.b #27	ENSGT00940000159124 #28	ENSGT00940000158635 #29	ENSGT00940000156473 #30	ENSGT00940000158224 #31	ENSGT00940000159542 #32	ENSGT00390000001846 #34	ENSGT00390000010130.e.a.a	ENSGT00390000014038.c.f.a	ENSGT00940000167705	ENSGT00940000155221.k.a	ENSGT00530000064276 #37
Hybrid Bos Indicus	MODERN SPECIES	5	MSC (ENSBIXG00005003095) #9	ENSBIXG00005018963	TRPA1 (ENSBIXG00005018939) #11	ENSBIXG00005018912	KCNB2 (ENSBIXG00005018865) #12	ENSBIXG00005018850	TERF1 (ENSBIXG00005018827) #13	SBSPON (ENSBIXG00005018777) #14	C8orf89 (ENSBIXG00005018748) #15	ENSBIXG00005018714 #16	RDH10 (ENSBIXG00005018695) #17	STAU2 (ENSBIXG00005018623) #24	UBE2W (ENSBIXG00005002979) #20	ENSBIXG00005018349	ELOC (ENSBIXG00005018332) #21	TMEM70 (ENSBIXG00005002961) #22	LY96 (ENSBIXG00005005658) #23	ENSBIXG00005002958	ENSBIXG00005002956 #26	JPH1 (ENSBIXG00005018221) #27	GDAP1 (ENSBIXG00005018202) #28	PI15 (ENSBIXG00005018163) #29	CRISPLD1 (ENSBIXG00005002938) #30	ENSBIXG00005018061	HNF4G (ENSBIXG00005018048) #31	ZFHX4 (ENSBIXG00005002922) #32	PEX2 (ENSBIXG00005017958) #34	ENSBIXG00005017941	ENSBIXG00005006242	ENSBIXG00005017889	ENSBIXG00005017861
Cow	MODERN SPECIES	5	EYA1 (ENSBTAG00000011298) #8	MSC (ENSBTAG00000005404) #9	ENSBTAG00000048963	TRPA1 (ENSBTAG00000002062) #11	ENSBTAG00000053459	KCNB2 (ENSBTAG00000040496) #12	TERF1 (ENSBTAG00000032982) #13	SBSPON (ENSBTAG00000017249) #14	ENSBTAG00000048369	C14H8orf89 (ENSBTAG00000049035) #15	RPL7 (ENSBTAG00000020139) #16	RDH10 (ENSBTAG00000020143) #17	STAU2 (ENSBTAG00000002076) #24	UBE2W (ENSBTAG00000048843) #20	ELOC (ENSBTAG00000050514) #21	TMEM70 (ENSBTAG00000012920) #22	LY96 (ENSBTAG00000008864) #23	ENSBTAG00000048533	ENSBTAG00000032944 #26	JPH1 (ENSBTAG00000008842) #27	GDAP1 (ENSBTAG00000012608) #28	PI15 (ENSBTAG00000019587) #29	CRISPLD1 (ENSBTAG00000004411) #30	HNF4G (ENSBTAG00000008280) #31	ZFHX4 (ENSBTAG00000033268) #32	PEX2 (ENSBTAG00000003885) #34	ENSBTAG00000032831	ENSBTAG00000039499	ENSBTAG00000050099	ENSBTAG00000009539 #36	PKIA (ENSBTAG00000008150) #37
Bos_a	ANCESTRAL SPECIES	42	ENSGT00950000182978.A.a.b.a #8	ENSGT00940000160438 #9	ENSGT00940000156118 #11	ENSGT00940000156297.h	ENSGT00940000161902.a.a #12	ENSGT01100000263481.n.a.b.a.b.b.a.b.a.a.b.a.a.b	ENSGT00940000155268 #13	ENSGT00390000008325.b.b #14	ENSGT00700000106212 #15	ENSGT00950000182878.b.a.c.a.a.b.p.b.a.a.b #16	ENSGT00940000157063 #17	ENSGT00940000154977 #24	ENSGT00940000156908 #20	ENSGT01100000263481.n.a.a.b.b.b.b.a.b.a.a.a	ENSGT00390000011717.ee #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00950000182990.a.a.a.b.u.a.b #26	ENSGT00940000156130.b #27	ENSGT00940000159124 #28	ENSGT00940000158635 #29	ENSGT00940000156473 #30	ENSGT00940000158224 #31	ENSGT00940000159542 #32	ENSGT00390000001846 #34	ENSGT00940000167705	ENSGT00940000155221.k.a	ENSGT00530000064276 #37	ENSGT00940000159419	ENSGT00390000004451	ENSGT01030000234597.a.b.b.e.a.a
Domestic yak	MODERN SPECIES	9	EYA1 (ENSBGRG00000012869) #8	ENSBGRG00000013347	MSC (ENSBGRG00000013369) #9	TRPA1 (ENSBGRG00000013391) #11	KCNB2 (ENSBGRG00000013790) #12	ENSBGRG00000013834	TERF1 (ENSBGRG00000013857) #13	SBSPON (ENSBGRG00000014028) #14	C8orf89 (ENSBGRG00000014079) #15	ENSBGRG00000014160 #16	RDH10 (ENSBGRG00000014304) #17	STAU2 (ENSBGRG00000014445) #24	UBE2W (ENSBGRG00000015045) #20	ENSBGRG00000015172	ELOC (ENSBGRG00000015189) #21	ENSBGRG00000015282 #22	LY96 (ENSBGRG00000015389) #23	FADS2 (ENSBGRG00000015525) #26	JPH1 (ENSBGRG00000015605) #27	GDAP1 (ENSBGRG00000015785) #28	PI15 (ENSBGRG00000015926) #29	ENSBGRG00000016157	CRISPLD1 (ENSBGRG00000016187) #30	ENSBGRG00000016483	HNF4G (ENSBGRG00000016548) #31	ZFHX4 (ENSBGRG00000016680) #32	ENSBGRG00000016816	ENSBGRG00000016845	PEX2 (ENSBGRG00000016881) #34	ENSBGRG00000016950	ENSBGRG00000017028
Wild yak	MODERN SPECIES	2105										C8orf89 (ENSBMUG00000010254) #15	ENSBMUG00000010227 #16	RDH10 (ENSBMUG00000010206) #17	STAU2 (ENSBMUG00000010133) #24	UBE2W (ENSBMUG00000010030) #20	ELOC (ENSBMUG00000010007) #21	TMEM70 (ENSBMUG00000009997) #22	LY96 (ENSBMUG00000009985) #23	ENSBMUG00000009967 #26
American bison	MODERN SPECIES	3158	XKR9 (ENSBBBG00000005385)	EYA1 (ENSBBBG00000020229) #8	MSC (ENSBBBG00000005473) #9	ENSBBBG00000008392	TRPA1 (ENSBBBG00000020321) #11	KCNB2 (ENSBBBG00000020338) #12	TERF1 (ENSBBBG00000020376) #13	SBSPON (ENSBBBG00000006971) #14	ENSBBBG00000005516	C8orf89 (ENSBBBG00000007918) #15	ENSBBBG00000000682 #16	RDH10 (ENSBBBG00000000657) #17	STAU2 (ENSBBBG00000000550) #24	UBE2W (ENSBBBG00000000523) #20	ENSBBBG00000005523 #21	TMEM70 (ENSBBBG00000020425) #22	LY96 (ENSBBBG00000006972) #23	ENSBBBG00000008573 #26	ENSBBBG00000020454	JPH1 (ENSBBBG00000020471) #27	GDAP1 (ENSBBBG00000020488) #28