Rodentia	ANCESTRAL SPECIES	19	ENSGT01090000260093.a	ENSGT00950000182978.A.a.b.a #10	ENSGT00940000160438 #11	ENSGT00940000156118 #12	ENSGT00940000161902.a.a #13	ENSGT00940000155268 #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b #17	ENSGT00940000157063 #18	ENSGT00860000135817	ENSGT00940000154977 #19	ENSGT00900000143784	ENSGT00940000156908 #20	ENSGT00390000011717 #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27	ENSGT00940000158224 #28	ENSGT00900000143810	ENSGT00940000159542 #29	ENSGT00860000136016	ENSGT00390000001846 #30	ENSGT00530000064276 #31	ENSGT00940000159419 #32	ENSGT00390000004451 #33	ENSGT01030000234597.a.b.b.e.a.a #34	ENSGT00940000157068 #35
Rodentia_A	ANCESTRAL SPECIES	18	ENSGT01090000260093.a	ENSGT00950000182978.A.a.b.a #10	ENSGT00940000160438 #11	ENSGT00940000156118 #12	ENSGT00940000161902.a.a #13	ENSGT00940000155268 #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b #17	ENSGT00940000157063 #18	ENSGT00860000135817	ENSGT00940000154977 #19	ENSGT00900000143784	ENSGT00940000156908 #20	ENSGT00390000011717 #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27	ENSGT00940000158224 #28	ENSGT00940000159542 #29	ENSGT00860000136016	ENSGT00390000001846 #30	ENSGT00530000064276 #31	ENSGT00940000159419 #32	ENSGT00390000004451 #33	ENSGT01030000234597.a.b.b.e.a.a #34	ENSGT00940000157068 #35	ENSGT00390000001057 #36
Hystricomorpha	ANCESTRAL SPECIES	12	ENSGT00510000046470.a.a.a.d.a #8	ENSGT00390000001710 #9	ENSGT01090000260093.a	ENSGT00950000182978.A.a.b.a #10	ENSGT00940000160438 #11	ENSGT00940000156118 #12	ENSGT00940000161902.a.a #13	ENSGT00940000155268 #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b #17	ENSGT00940000157063 #18	ENSGT00940000154977 #19	ENSGT00940000156908 #20	ENSGT00390000011717 #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27	ENSGT00940000158224 #28	ENSGT00940000159542 #29	ENSGT00390000001846 #30	ENSGT00530000064276 #31	ENSGT00940000159419 #32	ENSGT00390000004451 #33	ENSGT01030000234597.a.b.b.e.a.a #34	ENSGT00940000157068 #35	ENSGT00390000001057 #36	ENSGT00940000155294 #37
Hystricomorpha_a	ANCESTRAL SPECIES	9	ENSGT00510000046470.a.a.a.d.a #8	ENSGT00390000001710 #9	ENSGT01090000260093.a	ENSGT00950000182978.A.a.b.a #10	ENSGT00940000160438 #11	ENSGT00940000156118 #12	ENSGT00940000161902.a.a #13	ENSGT00940000155268 #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b.n ##17	ENSGT00940000157063 #18	ENSGT00940000154977 #19	ENSGT00940000156908 #20	ENSGT00390000011717 #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27	ENSGT00940000158224 #28	ENSGT00940000159542 #29	ENSGT00390000001846 #30	ENSGT00530000064276 #31	ENSGT00940000159419 #32	ENSGT00390000004451 #33	ENSGT01030000234597.a.b.b.e.a.a #34	ENSGT00940000157068 #35	ENSGT00390000001057 #36	ENSGT00940000155294 #37
Guinea pig	MODERN SPECIES		NCOA2 (ENSCPOG00000000493) #7	TRAM1 (ENSCPOG00000008533) #8	LACTB2 (ENSCPOG00000007604) #9	EYA1 (ENSCPOG00000000714) #10	MSC (ENSCPOG00000038612) #11	Trpa1 (ENSCPOG00000011519) #12	KCNB2 (ENSCPOG00000000689) #13	TERF1 (ENSCPOG00000009638) #14	SBSPON (ENSCPOG00000010933) #15	C8orf89 (ENSCPOG00000033934) #16	RPL7 (ENSCPOG00000004140) #17	ENSCPOG00000000770 #18	STAU2 (ENSCPOG00000015001) #19	UBE2W (ENSCPOG00000008803) #20	ELOC (ENSCPOG00000032030) #21	TMEM70 (ENSCPOG00000031120) #22	LY96 (ENSCPOG00000033283) #23	JPH1 (ENSCPOG00000002273) #24	GDAP1 (ENSCPOG00000002277) #25	PI15 (ENSCPOG00000036651) #26	CRISPLD1 (ENSCPOG00000002867) #27	HNF4G (ENSCPOG00000011625) #28	ZFHX4 (ENSCPOG00000012693) #29	PEX2 (ENSCPOG00000034224) #30	PKIA (ENSCPOG00000036157) #31	ZC2HC1A (ENSCPOG00000021093) #32	IL7 (ENSCPOG00000031262) #33	ENSCPOG00000010466 #34	HEY1 (ENSCPOG00000008527) #35	ENSCPOG00000031885 #36	TPD52 (ENSCPOG00000040600) #37
Hystricomorpha_b	ANCESTRAL SPECIES	25	ENSGT00390000001710 #9	ENSGT01090000260093.a	ENSGT00950000182978.A.a.b.a #10	ENSGT00940000160438 #11	ENSGT00940000156118 #12	ENSGT00940000164329	ENSGT00940000161902.a.a #13	ENSGT00940000155268 #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b.n ##17	ENSGT00940000157063 #18	ENSGT00940000154977 #19	ENSGT00940000156908 #20	ENSGT00390000011717 #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27	ENSGT00940000158224 #28	ENSGT00940000159542 #29	ENSGT00390000001846 #30	ENSGT00530000064276 #31	ENSGT00940000159419 #32	ENSGT00390000004451 #33	ENSGT01030000234597.a.b.b.e.a.a #34	ENSGT00940000157068 #35	ENSGT00390000001057 #36	ENSGT00940000155294 #37
Long-tailed chinchilla	MODERN SPECIES	151	TRAM1 (ENSCLAG00000001706) #8	LACTB2 (ENSCLAG00000001647) #9	XKR9 (ENSCLAG00000004198)	EYA1 (ENSCLAG00000003062) #10	MSC (ENSCLAG00000002927) #11	TRPA1 (ENSCLAG00000002418) #12	ENSCLAG00000002142	TERF1 (ENSCLAG00000002076) #14	SBSPON (ENSCLAG00000002049) #15	C8orf89 (ENSCLAG00000002274) #16	ENSCLAG00000002143 ##17	RDH10 (ENSCLAG00000002112) #18	STAU2 (ENSCLAG00000001824) #19	UBE2W (ENSCLAG00000002672) #20	ENSCLAG00000002529 #21	ENSCLAG00000002465 #22	LY96 (ENSCLAG00000002393) #23	JPH1 (ENSCLAG00000002323) #24	GDAP1 (ENSCLAG00000002271) #25	PI15 (ENSCLAG00000002216) #26	CRISPLD1 (ENSCLAG00000002069) #27	HNF4G (ENSCLAG00000013756) #28	ZFHX4 (ENSCLAG00000011659) #29	PEX2 (ENSCLAG00000010766) #30	PKIA (ENSCLAG00000010536) #31	ZC2HC1A (ENSCLAG00000009816) #32	ENSCLAG00000003448 #33	ENSCLAG00000003309 #34	HEY1 (ENSCLAG00000003265) #35	ENSCLAG00000003227 #36	TPD52 (ENSCLAG00000003004) #37
Degu	MODERN SPECIES	132	ENSODEG00000003933	EYA1 (ENSODEG00000003994) #10	MSC (ENSODEG00000004396) #11	TRPA1 (ENSODEG00000004465) #12	KCNB2 (ENSODEG00000004106) #13	ENSODEG00000004130	ENSODEG00000004166 #14	ENSODEG00000004364	SBSPON (ENSODEG00000004392) #15	C8orf89 (ENSODEG00000004421) #16	ENSODEG00000004457 ##17	RDH10 (ENSODEG00000003490) #18	STAU2 (ENSODEG00000003610) #19	UBE2W (ENSODEG00000003806) #20	ENSODEG00000003911 #21	TMEM70 (ENSODEG00000003940) #22	LY96 (ENSODEG00000004007) #23	JPH1 (ENSODEG00000002990) #24	GDAP1 (ENSODEG00000003006) #25	ENSODEG00000003062	PI15 (ENSODEG00000003073) #26	CRISPLD1 (ENSODEG00000003148) #27
Naked mole-rat female	MODERN SPECIES	13	XKR9 (ENSHGLG00000033679)	ENSHGLG00000018393	EYA1 (ENSHGLG00000019347) #10	ENSHGLG00000038455	MSC (ENSHGLG00000040745) #11	TRPA1 (ENSHGLG00000017879) #12	KCNB2 (ENSHGLG00000017013) #13	ENSHGLG00000021368	Terf1 (ENSHGLG00000013062) #14	SBSPON (ENSHGLG00000044318) #15	RPL7 (ENSHGLG00000017000) #17	RDH10 (ENSHGLG00000013673) #18	STAU2 (ENSHGLG00000014888) #19	UBE2W (ENSHGLG00000016745) #20	TCEB1 (ENSHGLG00000042986) #21	TMEM70 (ENSHGLG00000042950) #22	LY96 (ENSHGLG00000017254) #23	JPH1 (ENSHGLG00000016053) #24	GDAP1 (ENSHGLG00000040080) #25	PI15 (ENSHGLG00000015916) #26	ENSHGLG00000015637 #27	ENSHGLG00000018758	ENSHGLG00000033328	ENSHGLG00000034560	ENSHGLG00000007710 #28	ENSHGLG00000005959	ENSHGLG00000007968 #29	ENSHGLG00000005277	PEX2 (ENSHGLG00000037973) #30	ENSHGLG00000032661	ENSHGLG00000009819
Sciuridae	ANCESTRAL SPECIES	17	ENSGT01090000260093.a	ENSGT00950000182978.A.a.b.a #10	ENSGT00940000160438 #11	ENSGT00940000156118 #12	ENSGT00940000161902.a.a #13	ENSGT00940000155268 #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b.o.a #17	ENSGT00940000157063 #18	ENSGT00860000135817	ENSGT00940000154977 #19	ENSGT00900000143784	ENSGT00940000156908 #20	ENSGT00390000011717 #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27	ENSGT00940000158224 #28	ENSGT00940000159542 #29	ENSGT00860000136016	ENSGT00390000001846 #30	ENSGT00530000064276 #31	ENSGT00940000159419 #32	ENSGT00390000004451 #33	ENSGT01030000234597.a.b.b.e.a.a #34	ENSGT00940000157068 #35	ENSGT00390000001057 #36
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES		EYA1 (ENSSVLG00005001545) #10	MSC (ENSSVLG00005001842) #11	TRPA1 (ENSSVLG00005001874) #12	KCNB2 (ENSSVLG00005001924) #13	TERF1 (ENSSVLG00005001939) #14	SBSPON (ENSSVLG00005001957) #15	ENSSVLG00005001968	C8orf89 (ENSSVLG00005001984) #16	ENSSVLG00005001995 #17	RDH10 (ENSSVLG00005002017) #18	ENSSVLG00005002033	STAU2 (ENSSVLG00005002079) #19	ENSSVLG00005002189	UBE2W (ENSSVLG00005002205) #20	ENSSVLG00005002231 #21	ENSSVLG00005002242 #22	LY96 (ENSSVLG00005002267) #23	ENSSVLG00005002291	JPH1 (ENSSVLG00005002301) #24	GDAP1 (ENSSVLG00005002320) #25	PI15 (ENSSVLG00005002347) #26	CRISPLD1 (ENSSVLG00005002386) #27	HNF4G (ENSSVLG00005002470) #28	ZFHX4 (ENSSVLG00005002527) #29	ENSSVLG00005002565	PEX2 (ENSSVLG00005002571) #30	ENSSVLG00005002588	PKIA (ENSSVLG00005002593) #31	ZC2HC1A (ENSSVLG00005002603) #32	IL7 (ENSSVLG00005002623) #33	STMN2 (ENSSVLG00005002665) #34
Eurasian red squirrel	MODERN SPECIES	2	OR52W1 (ENSSVLG00005007793)	C11orf42 (ENSSVLG00005007762)	FHIP1B (ENSSVLG00005007692)	CNGA4 (ENSSVLG00005007640)	CCKBR (ENSSVLG00005007574)	CAVIN3 (ENSSVLG00005007510)	SMPD1 (ENSSVLG00005007479)	APBB1 (ENSSVLG00005007218)	HPX (ENSSVLG00005007102)	ENSSVLG00005007076	ARFIP2 (ENSSVLG00005006992)	TIMM10B (ENSSVLG00005006936)	ENSSVLG00005006905	ENSSVLG00005006876	ENSSVLG00005006819	ENSSVLG00005006785 #22	ENSSVLG00005006757	ENSSVLG00005006676	ILK (ENSSVLG00005006591)	ENSSVLG00005006530	TPP1 (ENSSVLG00005006235)	DCHS1 (ENSSVLG00005006133)	ENSSVLG00005006101	ENSSVLG00005006080	ENSSVLG00005006064	ENSSVLG00005006043	ENSSVLG00005006008	ENSSVLG00005005978	ENSSVLG00005005953	ENSSVLG00005005924	ENSSVLG00005005882
Marmotini	ANCESTRAL SPECIES	10	ENSGT00390000001710 #9	ENSGT01090000260093.a	ENSGT00950000182978.A.a.b.a #10	ENSGT00940000160438 #11	ENSGT00940000156118 #12	ENSGT00940000161902.a.a #13	ENSGT00940000155268.m #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b.o.a #17	ENSGT00940000157063 #18	ENSGT00860000135817	ENSGT00940000154977 #19	ENSGT00940000156908 #20	ENSGT00390000011717 #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27	ENSGT00390000014682.n	ENSGT00940000158224 #28	ENSGT00940000159542 #29	ENSGT00860000136016	ENSGT00390000001846 #30	ENSGT00530000064276 #31	ENSGT00940000159419 #32	ENSGT00390000004451 #33	ENSGT01030000234597.a.b.b.e.a.a #34	ENSGT00940000157068 #35
Alpin marmot	MODERN SPECIES	16	LACTB2 (ENSMMMG00000004742) #9	XKR9 (ENSMMMG00000004758)	EYA1 (ENSMMMG00000004783) #10	MSC (ENSMMMG00000004901) #11	TRPA1 (ENSMMMG00000004948) #12	KCNB2 (ENSMMMG00000005040) #13	ENSMMMG00000005060 #14	SBSPON (ENSMMMG00000005085) #15	C8orf89 (ENSMMMG00000005106) #16	RPL7 (ENSMMMG00000005128) #17	RDH10 (ENSMMMG00000005136) #18	ENSMMMG00000005173	STAU2 (ENSMMMG00000005198) #19	ENSMMMG00000005257 #20	ENSMMMG00000005290 #21	TMEM70 (ENSMMMG00000005317) #22	LY96 (ENSMMMG00000005320) #23	JPH1 (ENSMMMG00000005340) #24	GDAP1 (ENSMMMG00000005361) #25	PI15 (ENSMMMG00000005399) #26	CRISPLD1 (ENSMMMG00000005425) #27	ENSMMMG00000005479	HNF4G (ENSMMMG00000005503) #28	ENSMMMG00000005554	ZFHX4 (ENSMMMG00000005581) #29	ENSMMMG00000005619	PEX2 (ENSMMMG00000005624) #30	PKIA (ENSMMMG00000005670) #31	ZC2HC1A (ENSMMMG00000005695) #32	IL7 (ENSMMMG00000005732) #33	STMN2 (ENSMMMG00000005764) #34
Marmotini_b	ANCESTRAL SPECIES	52	ENSGT00510000046470.a.a.a.d.a #8	ENSGT00390000001710 #9	ENSGT01090000260093.a	ENSGT00950000182978.A.a.b.a #10	ENSGT00940000160438 #11	ENSGT00940000156118 #12	ENSGT00940000161902.a.a #13	ENSGT00940000155268.m #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b.o.a #17	ENSGT00940000157063 #18	ENSGT00940000154977 #19	ENSGT00940000156908 #20	ENSGT00390000011717 #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00390000014682.n	ENSGT00940000158224 #28
Arctic ground squirrel	MODERN SPECIES	183	TRAM1 (ENSUPAG00010010848) #8	LACTB2 (ENSUPAG00010010856) #9	XKR9 (ENSUPAG00010010873)	EYA1 (ENSUPAG00010010877) #10	MSC (ENSUPAG00010010953) #11	TRPA1 (ENSUPAG00010010963) #12	KCNB2 (ENSUPAG00010011054) #13	TERF1 (ENSUPAG00010011060) #14	SBSPON (ENSUPAG00010011134) #15	C8orf89 (ENSUPAG00010011139) #16	ENSUPAG00010011144 #17	RDH10 (ENSUPAG00010011147) #18	STAU2 (ENSUPAG00010011157) #19	UBE2W (ENSUPAG00010011274) #20	ELOC (ENSUPAG00010011281) #21	TMEM70 (ENSUPAG00010011291) #22	LY96 (ENSUPAG00010011295) #23
Rodentia_B	ANCESTRAL SPECIES	17	ENSGT00390000001710 #9	ENSGT01090000260093.a	ENSGT00950000182978.A.a.b.a #10	ENSGT00940000160438 #11	ENSGT00940000156118 #12	ENSGT00940000164329	ENSGT00940000161902.a.a #13	ENSGT00940000155268 #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b #17	ENSGT00940000157063 #18	ENSGT00940000154977 #19	ENSGT00940000156908 #20	ENSGT00390000011717 #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27	ENSGT00940000158224 #28	ENSGT00900000143810	ENSGT00940000159542 #29	ENSGT00860000136016	ENSGT00390000001846 #30	ENSGT00530000064276 #31	ENSGT00940000159419 #32	ENSGT00390000004451 #33	ENSGT01030000234597.a.b.b.e.a.a #34	ENSGT00940000157068 #35
Myomorpha	ANCESTRAL SPECIES	18	ENSGT00510000046470.a.a.a.d.a #8	ENSGT00390000001710 #9	ENSGT01090000260093.a	ENSGT00950000182978.A.a.b.a #10	ENSGT00940000160438 #11	ENSGT00940000156118 #12	ENSGT00940000161902.a.a #13	ENSGT00940000155268 #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b #17	ENSGT00940000157063 #18	ENSGT00940000154977 #19	ENSGT00940000156908 #20	ENSGT00390000011717 #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27	ENSGT00940000158224 #28	ENSGT00900000143810	ENSGT00940000159542 #29	ENSGT00860000136016	ENSGT00390000001846 #30	ENSGT00530000064276 #31	ENSGT00940000159419 #32	ENSGT00390000004451 #33	ENSGT01030000234597.a.b.b.e.a.a #34	ENSGT00940000157068 #35
Muroidea	ANCESTRAL SPECIES	14	ENSGT00510000046470.a.a.a.d.a #8	ENSGT00390000001710 #9	ENSGT01090000260093.a	ENSGT00950000182978.A.a.b.a #10	ENSGT00940000160438 #11	ENSGT00940000156118 #12	ENSGT00940000161902.a.a #13	ENSGT00940000155268 #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b #17	ENSGT00940000157063 #18	ENSGT00940000154977 #19	ENSGT00940000156908 #20	ENSGT00390000011717 #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27	ENSGT00940000158224 #28	ENSGT00900000143810	ENSGT00940000159542 #29	ENSGT00860000136016	ENSGT00390000001846 #30	ENSGT00530000064276 #31	ENSGT00940000159419 #32	ENSGT00390000004451 #33	ENSGT01030000234597.a.b.b.e.a.a #34	ENSGT00940000157068 #35
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00900000143241	ENSGT00510000046470.a.a.a.d.a #8	ENSGT00390000001710 #9	ENSGT01090000260093.a	ENSGT00950000182978.A.a.b.a #10	ENSGT00940000160438 #11	ENSGT00940000156118 #12	ENSGT00940000155268 #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b #17	ENSGT00940000157063 #18	ENSGT00940000154977 #19	ENSGT00940000156908 #20	ENSGT00390000011717 #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27	ENSGT00940000158224 #28	ENSGT00900000143810	ENSGT00940000159542 #29	ENSGT00860000136016	ENSGT00390000001846 #30	ENSGT00840000130852.a.b	ENSGT00530000064276 #31	ENSGT00940000159419 #32	ENSGT00390000004451 #33	ENSGT01030000234597.a.b.b.e.a.a #34
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00900000143241	ENSGT00510000046470.a.a.a.d.a #8	ENSGT00390000001710 #9	ENSGT01090000260093.a	ENSGT00950000182978.A.a.b.a #10	ENSGT00940000160438 #11	ENSGT00940000156118 #12	ENSGT00940000155268 #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b.w #17	ENSGT00940000157063 #18	ENSGT00940000154977 #19	ENSGT00940000156908 #20	ENSGT00390000011717.gc #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27	ENSGT00940000158224 #28	ENSGT00900000143810	ENSGT00940000159542 #29	ENSGT00860000136016	ENSGT00390000001846 #30	ENSGT00840000130852.a.b	ENSGT00530000064276 #31	ENSGT00940000159419 #32	ENSGT00390000004451 #33	ENSGT01030000234597.a.b.b.e.a.a #34
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00900000143241	ENSGT00510000046470.a.a.a.d.a #8	ENSGT00390000001710 #9	ENSGT01090000260093.a	ENSGT00950000182978.A.a.b.a #10	ENSGT00940000160438 #11	ENSGT00940000156118 #12	ENSGT00940000155268 #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b.w #17	ENSGT00940000157063 #18	ENSGT00940000154977 #19	ENSGT00940000156908 #20	ENSGT00390000011717.gc #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27	ENSGT00940000158224 #28	ENSGT00940000159542 #29	ENSGT00860000136016	ENSGT00390000001846 #30	ENSGT00840000130852.a.b	ENSGT00530000064276 #31	ENSGT00940000159419 #32	ENSGT00390000004451 #33	ENSGT01030000234597.a.b.b.e.a.a #34	ENSGT00940000157068 #35
Prairie vole	MODERN SPECIES	355	Tram1 (ENSMOCG00000022670) #8	Lactb2 (ENSMOCG00000019816) #9	Xkr9 (ENSMOCG00000000504)	Eya1 (ENSMOCG00000007882) #10	Msc (ENSMOCG00000017679) #11	Trpa1 (ENSMOCG00000004911) #12	Kcnb2 (ENSMOCG00000017006)	Terf1 (ENSMOCG00000010956) #14	Sbspon (ENSMOCG00000022550) #15	4930444P10Rik (ENSMOCG00000008670) #16	ENSMOCG00000002541 #17	Rdh10 (ENSMOCG00000014784) #18	Stau2 (ENSMOCG00000001037) #19	ENSMOCG00000007482 #20	ENSMOCG00000022694 #21	Tmem70 (ENSMOCG00000021313) #22	Ly96 (ENSMOCG00000016438) #23	Jph1 (ENSMOCG00000015433) #24	Hnf4g (ENSMOCG00000016906) #28	Zfhx4 (ENSMOCG00000021103) #29	Pex2 (ENSMOCG00000020937) #30	ENSMOCG00000019032	ENSMOCG00000016420	ENSMOCG00000014261	Pkia (ENSMOCG00000012790) #31	Zc2hc1a (ENSMOCG00000012476) #32	Il7 (ENSMOCG00000011670) #33	ENSMOCG00000019041	Car2 (ENSMOCG00000011119)	Car3 (ENSMOCG00000006267)	Car1 (ENSMOCG00000000956)
Northern American deer mouse	MODERN SPECIES	11	Xkr9 (ENSPEMG00000010792)	ENSPEMG00000011926	ENSPEMG00000028794	Eya1 (ENSPEMG00000015459) #10	Msc (ENSPEMG00000010582) #11	Trpa1 (ENSPEMG00000011394) #12	Kcnb2 (ENSPEMG00000012206)	Terf1 (ENSPEMG00000013150) #14	Sbspon (ENSPEMG00000017540) #15	4930444P10Rik (ENSPEMG00000001432) #16	ENSPEMG00000007818 #17	Rdh10 (ENSPEMG00000026926) #18	Stau2 (ENSPEMG00000012104) #19	Ube2w (ENSPEMG00000019057) #20	ENSPEMG00000009658 #21	Tmem70 (ENSPEMG00000012641) #22	Ly96 (ENSPEMG00000015591) #23	Jph1 (ENSPEMG00000019130) #24	Gdap1 (ENSPEMG00000028457) #25	Pi15 (ENSPEMG00000011138) #26	Crispld1 (ENSPEMG00000017885) #27	Hnf4g (ENSPEMG00000000555) #28	Zfhx4 (ENSPEMG00000017619) #29	ENSPEMG00000030247	Pex2 (ENSPEMG00000016945) #30	ENSPEMG00000016512	ENSPEMG00000016137	Pkia (ENSPEMG00000026223) #31	Zc2hc1a (ENSPEMG00000015507) #32	Il7 (ENSPEMG00000015008) #33	ENSPEMG00000030639
Cricetinae	ANCESTRAL SPECIES	31	ENSGT00950000183021.a.a.b #7	ENSGT00900000143241	ENSGT00510000046470.a.a.a.d.a #8	ENSGT00390000001710 #9	ENSGT01090000260093.a	ENSGT00950000182978.A.a.b.a #10	ENSGT00940000160438 #11	ENSGT00940000155268 #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b.w.a #17	ENSGT00940000157063 #18	ENSGT00940000154977 #19	ENSGT00940000156908 #20	ENSGT00390000011717.gc #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27	ENSGT00940000158224 #28	ENSGT00900000143810	ENSGT00940000159542 #29	ENSGT00390000001846 #30	ENSGT00840000130852.a.b	ENSGT00530000064276 #31	ENSGT00940000159419 #32	ENSGT00390000004451 #33	ENSGT01030000234597.a.b.b.e.a.a #34	ENSGT00940000157068 #35
Chinese hamster chok1gshd	MODERN SPECIES	136	Xkr9 (ENSCGRG00001015492)	ENSCGRG00001015809	Eya1 (ENSCGRG00001017253) #10	Msc (ENSCGRG00001020363) #11	ENSCGRG00001021021	Trpa1 (ENSCGRG00001000252) #12	Kcnb2 (ENSCGRG00001005381)	Terf1 (ENSCGRG00001011681) #14	Sbspon (ENSCGRG00001013329) #15	4930444P10Rik (ENSCGRG00001020570) #16	ENSCGRG00001021333 #17	Rdh10 (ENSCGRG00001022234) #18	Stau2 (ENSCGRG00001006522) #19	ENSCGRG00001022923 #20	Eloc (ENSCGRG00001001449) #21	Tmem70 (ENSCGRG00001018216) #22	Ly96 (ENSCGRG00001019128) #23	Jph1 (ENSCGRG00001020008) #24	Gdap1 (ENSCGRG00001020654) #25	ENSCGRG00001021316	Pi15 (ENSCGRG00001022091) #26	Crispld1 (ENSCGRG00001023292) #27	Hnf4g (ENSCGRG00001005690) #28	ENSCGRG00001015146	Zfhx4 (ENSCGRG00001011235) #29	PEX2 (ENSCGRG00001015243) #30	ENSCGRG00001015435	Pkia (ENSCGRG00001014887) #31	Zc2hc1a (ENSCGRG00001015367) #32	Il7 (ENSCGRG00001016068) #33	Stmn2 (ENSCGRG00001016949) #34
Murinae	ANCESTRAL SPECIES	2	ENSGT00950000183021.a.a.b #7	ENSGT00510000046470.a.a.a.d.a #8	ENSGT00390000001710 #9	ENSGT01090000260093.a	ENSGT00950000182978.A.a.b.a #10	ENSGT00940000160438 #11	ENSGT00940000156118 #12	ENSGT00940000155268 #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b #17	ENSGT00940000157063 #18	ENSGT00940000154977 #19	ENSGT00940000156908 #20	ENSGT00390000011717 #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27
Mus	ANCESTRAL SPECIES	3	ENSGT00950000183021.a.a.b #7	ENSGT00510000046470.a.a.a.d.a #8	ENSGT00390000001710 #9	ENSGT01090000260093.a	ENSGT00950000182978.A.a.b.a #10	ENSGT00940000160438 #11	ENSGT00940000156118 #12	ENSGT00940000155268 #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b #17	ENSGT00940000157063 #18	ENSGT00940000154977 #19	ENSGT00940000156908 #20	ENSGT00390000011717 #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27
Mus_A	ANCESTRAL SPECIES	5	ENSGT00950000183021.a.a.b #7	ENSGT00510000046470.a.a.a.d.a #8	ENSGT00390000001710 #9	ENSGT01090000260093.a	ENSGT00950000182978.A.a.b.a #10	ENSGT00940000160438 #11	ENSGT00940000156118 #12	ENSGT00940000155268 #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b #17	ENSGT00940000157063 #18	ENSGT00940000154977 #19	ENSGT00940000156908 #20	ENSGT00390000011717 #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27	ENSGT00940000162362	ENSGT00400000023306	ENSGT00390000006761	ENSGT00950000182848.d	ENSGT00950000182848.c.b.b.b	ENSGT00940000160697	ENSGT00940000161882	ENSGT00940000156618	ENSGT01050000244824.B	ENSGT00940000159860
Mus_B	ANCESTRAL SPECIES	21	ENSGT00950000183021.a.a.b #7	ENSGT00510000046470.a.a.a.d.a #8	ENSGT00390000001710 #9	ENSGT01090000260093.a	ENSGT00950000182978.A.a.b.a #10	ENSGT00940000160438 #11	ENSGT00940000156118 #12	ENSGT00940000155268 #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b #17	ENSGT00940000157063 #18	ENSGT00940000154977 #19	ENSGT00940000156908 #20	ENSGT00390000011717 #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27	ENSGT00940000162362	ENSGT00400000023306	ENSGT00390000006761	ENSGT00950000182848.d	ENSGT00950000182848.c.b.b.b	ENSGT00940000160697	ENSGT00940000161882	ENSGT00940000156618	ENSGT01050000244824.B	ENSGT00940000159860
Mouse	MODERN SPECIES		Tram1 (ENSMUSG00000025935) #8	Lactb2 (ENSMUSG00000025937) #9	Xkr9 (ENSMUSG00000067813)	Eya1 (ENSMUSG00000025932) #10	Msc (ENSMUSG00000025930) #11	Trpa1 (ENSMUSG00000032769) #12	Kcnb2 (ENSMUSG00000092083)	Terf1 (ENSMUSG00000025925) #14	Sbspon (ENSMUSG00000032719) #15	4930444P10Rik (ENSMUSG00000067795) #16	Rpl7 (ENSMUSG00000043716) #17	Rdh10 (ENSMUSG00000025921) #18	Stau2 (ENSMUSG00000025920) #19	Ube2w (ENSMUSG00000025939) #20	Eloc (ENSMUSG00000079658) #21	Tmem70 (ENSMUSG00000025940) #22	Ly96 (ENSMUSG00000025779) #23	Jph1 (ENSMUSG00000042686) #24	Gdap1 (ENSMUSG00000025777) #25	Pi15 (ENSMUSG00000067780) #26	Crispld1 (ENSMUSG00000025776) #27	Crisp4 (ENSMUSG00000025774)	Defb18 (ENSMUSG00000073735)	Defb41 (ENSMUSG00000067773)	Tfap2d (ENSMUSG00000042596)	Tfap2b (ENSMUSG00000025927)	Pkhd1 (ENSMUSG00000043760)	Il17a (ENSMUSG00000025929)	Il17f (ENSMUSG00000041872)	Mcm3 (ENSMUSG00000041859)	Paqr8 (ENSMUSG00000025931)
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000154681.a	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT00940000157210	ENSGT00940000158019	ENSGT00940000153709.A	ENSGT00940000154899	ENSGT00940000155268 #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b #17	ENSGT00940000157063 #18	ENSGT00940000154977 #19	ENSGT00940000156908 #20	ENSGT00390000011717 #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27	ENSGT00940000162362	ENSGT00400000023306	ENSGT00390000006761	ENSGT00950000182848.d	ENSGT00950000182848.c.b.b.b	ENSGT00940000160697	ENSGT00940000161882	ENSGT00940000156618	ENSGT01050000244824.B	ENSGT00940000159860
spretus	MODERN SPECIES		Lactb2 (MGP_SPRETEiJ_G0014760) #9	Xkr9 (MGP_SPRETEiJ_G0014761)	Eya1 (MGP_SPRETEiJ_G0014762) #10	Msc (MGP_SPRETEiJ_G0014763) #11	Trpa1 (MGP_SPRETEiJ_G0014764) #12	MGP_SPRETEiJ_G0014765	Kcnb2 (MGP_SPRETEiJ_G0014766)	Terf1 (MGP_SPRETEiJ_G0014767) #14	Sbspon (MGP_SPRETEiJ_G0014768) #15	4930444P10Rik (MGP_SPRETEiJ_G0014769) #16	Rpl7 (MGP_SPRETEiJ_G0014770) #17	Rdh10 (MGP_SPRETEiJ_G0014771) #18	Stau2 (MGP_SPRETEiJ_G0014772) #19	MGP_SPRETEiJ_G0014773 #20	Eloc (MGP_SPRETEiJ_G0014774) #21	Tmem70 (MGP_SPRETEiJ_G0014775) #22	Ly96 (MGP_SPRETEiJ_G0014776) #23	Jph1 (MGP_SPRETEiJ_G0014777) #24	Gdap1 (MGP_SPRETEiJ_G0014778) #25	Pi15 (MGP_SPRETEiJ_G0014779) #26	Crispld1 (MGP_SPRETEiJ_G0014780) #27	Crisp4 (MGP_SPRETEiJ_G0014781)	Defb18 (MGP_SPRETEiJ_G0014782)	Defb41 (MGP_SPRETEiJ_G0014783)	Tfap2d (MGP_SPRETEiJ_G0014784)	Tfap2b (MGP_SPRETEiJ_G0014785)	MGP_SPRETEiJ_G0014786	Il17a (MGP_SPRETEiJ_G0014787)	Il17f (MGP_SPRETEiJ_G0014788)	Mcm3 (MGP_SPRETEiJ_G0014789)	Paqr8 (MGP_SPRETEiJ_G0014790)
Steppe mouse	MODERN SPECIES	3112				Trpa1 (ENSMSIG00000008184) #12	ENSMSIG00000008268	Kcnb2 (ENSMSIG00000008283)	ENSMSIG00000008321	Terf1 (ENSMSIG00000008344) #14	Sbspon (ENSMSIG00000008395) #15	4930444P10Rik (ENSMSIG00000008432) #16	ENSMSIG00000008454 #17	Rdh10 (ENSMSIG00000008466) #18	Stau2 (ENSMSIG00000008506) #19	ENSMSIG00000008651 #20	Eloc (ENSMSIG00000008694) #21	Tmem70 (ENSMSIG00000008764) #22	Ly96 (ENSMSIG00000008783) #23	ENSMSIG00000008820
Ryukyu mouse	MODERN SPECIES		Tram1 (MGP_CAROLIEiJ_G0013955) #8	Lactb2 (MGP_CAROLIEiJ_G0013956) #9	Xkr9 (MGP_CAROLIEiJ_G0013957)	Eya1 (MGP_CAROLIEiJ_G0013958) #10	Msc (MGP_CAROLIEiJ_G0013959) #11	Trpa1 (MGP_CAROLIEiJ_G0013960) #12	Kcnb2 (MGP_CAROLIEiJ_G0013961)	Terf1 (MGP_CAROLIEiJ_G0013962) #14	Sbspon (MGP_CAROLIEiJ_G0013963) #15	4930444P10Rik (MGP_CAROLIEiJ_G0013964) #16	Rpl7 (MGP_CAROLIEiJ_G0013965) #17	Rdh10 (MGP_CAROLIEiJ_G0013966) #18	Stau2 (MGP_CAROLIEiJ_G0013967) #19	MGP_CAROLIEiJ_G0013968 #20	Eloc (MGP_CAROLIEiJ_G0013969) #21	Tmem70 (MGP_CAROLIEiJ_G0013970) #22	Ly96 (MGP_CAROLIEiJ_G0013971) #23	Jph1 (MGP_CAROLIEiJ_G0013972) #24	Gdap1 (MGP_CAROLIEiJ_G0013973) #25	Pi15 (MGP_CAROLIEiJ_G0013974) #26	Crispld1 (MGP_CAROLIEiJ_G0013975) #27	Crisp4 (MGP_CAROLIEiJ_G0013976)	Defb18 (MGP_CAROLIEiJ_G0013977)	Defb41 (MGP_CAROLIEiJ_G0013978)	Tfap2d (MGP_CAROLIEiJ_G0013979)	Tfap2b (MGP_CAROLIEiJ_G0013980)	Pkhd1 (MGP_CAROLIEiJ_G0013981)	Il17a (MGP_CAROLIEiJ_G0013982)	Il17f (MGP_CAROLIEiJ_G0013983)	Mcm3 (MGP_CAROLIEiJ_G0013984)	Paqr8 (MGP_CAROLIEiJ_G0013985)
Shrew mouse	MODERN SPECIES	14	Tram1 (MGP_PahariEiJ_G0023864) #8	Lactb2 (MGP_PahariEiJ_G0023863) #9	Xkr9 (MGP_PahariEiJ_G0023862)	Eya1 (MGP_PahariEiJ_G0023861) #10	Msc (MGP_PahariEiJ_G0023860) #11	Trpa1 (MGP_PahariEiJ_G0023859) #12	Kcnb2 (MGP_PahariEiJ_G0023858)	Terf1 (MGP_PahariEiJ_G0023857) #14	Sbspon (MGP_PahariEiJ_G0023856) #15	MGP_PahariEiJ_G0023855 #16	Rpl7 (MGP_PahariEiJ_G0023854) #17	Rdh10 (MGP_PahariEiJ_G0023853) #18	Stau2 (MGP_PahariEiJ_G0023852) #19	MGP_PahariEiJ_G0023851 #20	MGP_PahariEiJ_G0023850	Tmem70 (MGP_PahariEiJ_G0023849) #22	Ly96 (MGP_PahariEiJ_G0023848) #23	Jph1 (MGP_PahariEiJ_G0023847) #24	Gdap1 (MGP_PahariEiJ_G0023846) #25	Pi15 (MGP_PahariEiJ_G0023845) #26	Crispld1 (MGP_PahariEiJ_G0023844) #27
Rat	MODERN SPECIES	15	Eya1 (ENSRNOG00000007590) #10	Msc (ENSRNOG00000007540) #11	Trpa1 (ENSRNOG00000007354) #12	ENSRNOG00000067608	AABR07047316.1 (ENSRNOG00000062174)	AC125757.1 (ENSRNOG00000028991)	Terf1 (ENSRNOG00000007291) #14	Sbspon (ENSRNOG00000007258) #15	LOC297756 (ENSRNOG00000007238)	LOC100912291 (ENSRNOG00000047310) #16	Rdh10 (ENSRNOG00000006681) #18	ENSRNOG00000069669	AABR07046707.1 (ENSRNOG00000042458) #19	Ube2w (ENSRNOG00000062415) #20	Eloc (ENSRNOG00000031730) #21	Tmem70 (ENSRNOG00000006608) #22	Ly96 (ENSRNOG00000067966) #23	Jph1 (ENSRNOG00000006110) #24	Gdap1 (ENSRNOG00000005850) #25	AABR07046657.1 (ENSRNOG00000022709)	Pi15 (ENSRNOG00000017686) #26	Crispld1 (ENSRNOG00000017773) #27	ENSRNOG00000065369	Cct6a-ps3 (ENSRNOG00000065568)	ENSRNOG00000071172
Upper Galilee mountains blind mole rat	MODERN SPECIES	1461	Lactb2 (ENSNGAG00000009316) #9	Xkr9 (ENSNGAG00000011326)	Eya1 (ENSNGAG00000013837) #10	Msc (ENSNGAG00000000263) #11	Trpa1 (ENSNGAG00000010202) #12	ENSNGAG00000007698 #13	Terf1 (ENSNGAG00000014419) #14	Sbspon (ENSNGAG00000000871) #15	4930444P10Rik (ENSNGAG00000001486) #16	Rpl7 (ENSNGAG00000016349) #17	Rdh10 (ENSNGAG00000017245) #18	ENSNGAG00000013114	Stau2 (ENSNGAG00000017873) #19	ENSNGAG00000000787 #20	ENSNGAG00000012781 #21	Tmem70 (ENSNGAG00000009219) #22	Ly96 (ENSNGAG00000013344) #23	Jph1 (ENSNGAG00000013993) #24	ENSNGAG00000014140	Gdap1 (ENSNGAG00000016669) #25	ENSNGAG00000015264	Pi15 (ENSNGAG00000018827) #26	Crispld1 (ENSNGAG00000002985) #27	ENSNGAG00000008138	Hnf4g (ENSNGAG00000010706) #28	ENSNGAG00000018890	Pex2 (ENSNGAG00000019822) #30