Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00900000143241	ENSGT00510000046470.a.a.a.d.a #7	ENSGT00390000001710 #8	ENSGT01090000260093.a #9	ENSGT00950000182978.A.a.b.a #10	ENSGT00940000160438 #11	ENSGT00940000156118 #12	ENSGT00940000155268 #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b #17	ENSGT00940000157063 #18	ENSGT00940000154977 #19	ENSGT00940000156908 #20	ENSGT00390000011717 #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27	ENSGT00940000158224	ENSGT00900000143810	ENSGT00940000159542	ENSGT00860000136016	ENSGT00390000001846	ENSGT00840000130852.a.b	ENSGT00530000064276	ENSGT00940000159419	ENSGT00390000004451	ENSGT01030000234597.a.b.b.e.a.a
Murinae	ANCESTRAL SPECIES	2	ENSGT00950000183021.a.a.b	ENSGT00510000046470.a.a.a.d.a #7	ENSGT00390000001710 #8	ENSGT01090000260093.a #9	ENSGT00950000182978.A.a.b.a #10	ENSGT00940000160438 #11	ENSGT00940000156118 #12	ENSGT00940000155268 #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b #17	ENSGT00940000157063 #18	ENSGT00940000154977 #19	ENSGT00940000156908 #20	ENSGT00390000011717 #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27
Mus	ANCESTRAL SPECIES	3	ENSGT00950000183021.a.a.b	ENSGT00510000046470.a.a.a.d.a #7	ENSGT00390000001710 #8	ENSGT01090000260093.a #9	ENSGT00950000182978.A.a.b.a #10	ENSGT00940000160438 #11	ENSGT00940000156118 #12	ENSGT00940000155268 #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b #17	ENSGT00940000157063 #18	ENSGT00940000154977 #19	ENSGT00940000156908 #20	ENSGT00390000011717 #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27
Mus_A	ANCESTRAL SPECIES	5	ENSGT00950000183021.a.a.b	ENSGT00510000046470.a.a.a.d.a #7	ENSGT00390000001710 #8	ENSGT01090000260093.a #9	ENSGT00950000182978.A.a.b.a #10	ENSGT00940000160438 #11	ENSGT00940000156118 #12	ENSGT00940000155268 #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b #17	ENSGT00940000157063 #18	ENSGT00940000154977 #19	ENSGT00940000156908 #20	ENSGT00390000011717 #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27	ENSGT00940000162362 #28	ENSGT00400000023306 #29	ENSGT00390000006761 #30	ENSGT00950000182848.d #31	ENSGT00950000182848.c.b.b.b #32	ENSGT00940000160697 #33	ENSGT00940000161882 #34	ENSGT00940000156618 #35	ENSGT01050000244824.B #36	ENSGT00940000159860 #37
Mus_B	ANCESTRAL SPECIES	21	ENSGT00950000183021.a.a.b	ENSGT00510000046470.a.a.a.d.a #7	ENSGT00390000001710 #8	ENSGT01090000260093.a #9	ENSGT00950000182978.A.a.b.a #10	ENSGT00940000160438 #11	ENSGT00940000156118 #12	ENSGT00940000155268 #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b #17	ENSGT00940000157063 #18	ENSGT00940000154977 #19	ENSGT00940000156908 #20	ENSGT00390000011717 #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27	ENSGT00940000162362 #28	ENSGT00400000023306 #29	ENSGT00390000006761 #30	ENSGT00950000182848.d #31	ENSGT00950000182848.c.b.b.b #32	ENSGT00940000160697 #33	ENSGT00940000161882 #34	ENSGT00940000156618 #35	ENSGT01050000244824.B #36	ENSGT00940000159860 #37
Mouse	MODERN SPECIES		Tram1 (ENSMUSG00000025935) #7	Lactb2 (ENSMUSG00000025937) #8	Xkr9 (ENSMUSG00000067813) #9	Eya1 (ENSMUSG00000025932) #10	Msc (ENSMUSG00000025930) #11	Trpa1 (ENSMUSG00000032769) #12	Kcnb2 (ENSMUSG00000092083) #13	Terf1 (ENSMUSG00000025925) #14	Sbspon (ENSMUSG00000032719) #15	4930444P10Rik (ENSMUSG00000067795) #16	Rpl7 (ENSMUSG00000043716) #17	Rdh10 (ENSMUSG00000025921) #18	Stau2 (ENSMUSG00000025920) #19	Ube2w (ENSMUSG00000025939) #20	Eloc (ENSMUSG00000079658) #21	Tmem70 (ENSMUSG00000025940) #22	Ly96 (ENSMUSG00000025779) #23	Jph1 (ENSMUSG00000042686) #24	Gdap1 (ENSMUSG00000025777) #25	Pi15 (ENSMUSG00000067780) #26	Crispld1 (ENSMUSG00000025776) #27	Crisp4 (ENSMUSG00000025774) #28	Defb18 (ENSMUSG00000073735) #29	Defb41 (ENSMUSG00000067773) #30	Tfap2d (ENSMUSG00000042596) #31	Tfap2b (ENSMUSG00000025927) #32	Pkhd1 (ENSMUSG00000043760) #33	Il17a (ENSMUSG00000025929) #34	Il17f (ENSMUSG00000041872) #35	Mcm3 (ENSMUSG00000041859) #36	Paqr8 (ENSMUSG00000025931) #37
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000154681.a	ENSGT00950000182909.b.b.a	ENSGT00530000063956.a	ENSGT00940000157210	ENSGT00940000158019	ENSGT00940000153709.A	ENSGT00940000154899 #13	ENSGT00940000155268 #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b #17	ENSGT00940000157063 #18	ENSGT00940000154977 #19	ENSGT00940000156908 #20	ENSGT00390000011717 #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27	ENSGT00940000162362 #28	ENSGT00400000023306 #29	ENSGT00390000006761 #30	ENSGT00950000182848.d #31	ENSGT00950000182848.c.b.b.b #32	ENSGT00940000160697 #33	ENSGT00940000161882 #34	ENSGT00940000156618 #35	ENSGT01050000244824.B #36	ENSGT00940000159860 #37
spretus	MODERN SPECIES		Lactb2 (MGP_SPRETEiJ_G0014760) #8	Xkr9 (MGP_SPRETEiJ_G0014761) #9	Eya1 (MGP_SPRETEiJ_G0014762) #10	Msc (MGP_SPRETEiJ_G0014763) #11	Trpa1 (MGP_SPRETEiJ_G0014764) #12	MGP_SPRETEiJ_G0014765	Kcnb2 (MGP_SPRETEiJ_G0014766) #13	Terf1 (MGP_SPRETEiJ_G0014767) #14	Sbspon (MGP_SPRETEiJ_G0014768) #15	4930444P10Rik (MGP_SPRETEiJ_G0014769) #16	Rpl7 (MGP_SPRETEiJ_G0014770) #17	Rdh10 (MGP_SPRETEiJ_G0014771) #18	Stau2 (MGP_SPRETEiJ_G0014772) #19	MGP_SPRETEiJ_G0014773 #20	Eloc (MGP_SPRETEiJ_G0014774) #21	Tmem70 (MGP_SPRETEiJ_G0014775) #22	Ly96 (MGP_SPRETEiJ_G0014776) #23	Jph1 (MGP_SPRETEiJ_G0014777) #24	Gdap1 (MGP_SPRETEiJ_G0014778) #25	Pi15 (MGP_SPRETEiJ_G0014779) #26	Crispld1 (MGP_SPRETEiJ_G0014780) #27	Crisp4 (MGP_SPRETEiJ_G0014781) #28	Defb18 (MGP_SPRETEiJ_G0014782) #29	Defb41 (MGP_SPRETEiJ_G0014783) #30	Tfap2d (MGP_SPRETEiJ_G0014784) #31	Tfap2b (MGP_SPRETEiJ_G0014785) #32	MGP_SPRETEiJ_G0014786 #33	Il17a (MGP_SPRETEiJ_G0014787) #34	Il17f (MGP_SPRETEiJ_G0014788) #35	Mcm3 (MGP_SPRETEiJ_G0014789) #36	Paqr8 (MGP_SPRETEiJ_G0014790) #37
Steppe mouse	MODERN SPECIES	3112				Trpa1 (ENSMSIG00000008184) #12	ENSMSIG00000008268	Kcnb2 (ENSMSIG00000008283) #13	ENSMSIG00000008321	Terf1 (ENSMSIG00000008344) #14	Sbspon (ENSMSIG00000008395) #15	4930444P10Rik (ENSMSIG00000008432) #16	ENSMSIG00000008454 #17	Rdh10 (ENSMSIG00000008466) #18	Stau2 (ENSMSIG00000008506) #19	ENSMSIG00000008651 #20	Eloc (ENSMSIG00000008694) #21	Tmem70 (ENSMSIG00000008764) #22	Ly96 (ENSMSIG00000008783) #23	ENSMSIG00000008820
Ryukyu mouse	MODERN SPECIES		Tram1 (MGP_CAROLIEiJ_G0013955) #7	Lactb2 (MGP_CAROLIEiJ_G0013956) #8	Xkr9 (MGP_CAROLIEiJ_G0013957) #9	Eya1 (MGP_CAROLIEiJ_G0013958) #10	Msc (MGP_CAROLIEiJ_G0013959) #11	Trpa1 (MGP_CAROLIEiJ_G0013960) #12	Kcnb2 (MGP_CAROLIEiJ_G0013961) #13	Terf1 (MGP_CAROLIEiJ_G0013962) #14	Sbspon (MGP_CAROLIEiJ_G0013963) #15	4930444P10Rik (MGP_CAROLIEiJ_G0013964) #16	Rpl7 (MGP_CAROLIEiJ_G0013965) #17	Rdh10 (MGP_CAROLIEiJ_G0013966) #18	Stau2 (MGP_CAROLIEiJ_G0013967) #19	MGP_CAROLIEiJ_G0013968 #20	Eloc (MGP_CAROLIEiJ_G0013969) #21	Tmem70 (MGP_CAROLIEiJ_G0013970) #22	Ly96 (MGP_CAROLIEiJ_G0013971) #23	Jph1 (MGP_CAROLIEiJ_G0013972) #24	Gdap1 (MGP_CAROLIEiJ_G0013973) #25	Pi15 (MGP_CAROLIEiJ_G0013974) #26	Crispld1 (MGP_CAROLIEiJ_G0013975) #27	Crisp4 (MGP_CAROLIEiJ_G0013976) #28	Defb18 (MGP_CAROLIEiJ_G0013977) #29	Defb41 (MGP_CAROLIEiJ_G0013978) #30	Tfap2d (MGP_CAROLIEiJ_G0013979) #31	Tfap2b (MGP_CAROLIEiJ_G0013980) #32	Pkhd1 (MGP_CAROLIEiJ_G0013981) #33	Il17a (MGP_CAROLIEiJ_G0013982) #34	Il17f (MGP_CAROLIEiJ_G0013983) #35	Mcm3 (MGP_CAROLIEiJ_G0013984) #36	Paqr8 (MGP_CAROLIEiJ_G0013985) #37
Shrew mouse	MODERN SPECIES	14	Tram1 (MGP_PahariEiJ_G0023864) #7	Lactb2 (MGP_PahariEiJ_G0023863) #8	Xkr9 (MGP_PahariEiJ_G0023862) #9	Eya1 (MGP_PahariEiJ_G0023861) #10	Msc (MGP_PahariEiJ_G0023860) #11	Trpa1 (MGP_PahariEiJ_G0023859) #12	Kcnb2 (MGP_PahariEiJ_G0023858) #13	Terf1 (MGP_PahariEiJ_G0023857) #14	Sbspon (MGP_PahariEiJ_G0023856) #15	MGP_PahariEiJ_G0023855 #16	Rpl7 (MGP_PahariEiJ_G0023854) #17	Rdh10 (MGP_PahariEiJ_G0023853) #18	Stau2 (MGP_PahariEiJ_G0023852) #19	MGP_PahariEiJ_G0023851 #20	MGP_PahariEiJ_G0023850	Tmem70 (MGP_PahariEiJ_G0023849) #22	Ly96 (MGP_PahariEiJ_G0023848) #23	Jph1 (MGP_PahariEiJ_G0023847) #24	Gdap1 (MGP_PahariEiJ_G0023846) #25	Pi15 (MGP_PahariEiJ_G0023845) #26	Crispld1 (MGP_PahariEiJ_G0023844) #27
Rat	MODERN SPECIES	15	Eya1 (ENSRNOG00000007590) #10	Msc (ENSRNOG00000007540) #11	Trpa1 (ENSRNOG00000007354) #12	ENSRNOG00000067608	AABR07047316.1 (ENSRNOG00000062174)	AC125757.1 (ENSRNOG00000028991) #13	Terf1 (ENSRNOG00000007291) #14	Sbspon (ENSRNOG00000007258) #15	LOC297756 (ENSRNOG00000007238)	LOC100912291 (ENSRNOG00000047310) #16	Rdh10 (ENSRNOG00000006681) #18	ENSRNOG00000069669	AABR07046707.1 (ENSRNOG00000042458) #19	Ube2w (ENSRNOG00000062415) #20	Eloc (ENSRNOG00000031730) #21	Tmem70 (ENSRNOG00000006608) #22	Ly96 (ENSRNOG00000067966) #23	Jph1 (ENSRNOG00000006110) #24	Gdap1 (ENSRNOG00000005850) #25	AABR07046657.1 (ENSRNOG00000022709)	Pi15 (ENSRNOG00000017686) #26	Crispld1 (ENSRNOG00000017773) #27	ENSRNOG00000065369	Cct6a-ps3 (ENSRNOG00000065568)	ENSRNOG00000071172
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00900000143241	ENSGT00510000046470.a.a.a.d.a #7	ENSGT00390000001710 #8	ENSGT01090000260093.a #9	ENSGT00950000182978.A.a.b.a #10	ENSGT00940000160438 #11	ENSGT00940000156118 #12	ENSGT00940000155268 #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b.w #17	ENSGT00940000157063 #18	ENSGT00940000154977 #19	ENSGT00940000156908 #20	ENSGT00390000011717.gc #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27	ENSGT00940000158224	ENSGT00900000143810	ENSGT00940000159542	ENSGT00860000136016	ENSGT00390000001846	ENSGT00840000130852.a.b	ENSGT00530000064276	ENSGT00940000159419	ENSGT00390000004451	ENSGT01030000234597.a.b.b.e.a.a
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00900000143241	ENSGT00510000046470.a.a.a.d.a #7	ENSGT00390000001710 #8	ENSGT01090000260093.a #9	ENSGT00950000182978.A.a.b.a #10	ENSGT00940000160438 #11	ENSGT00940000156118 #12	ENSGT00940000155268 #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b.w #17	ENSGT00940000157063 #18	ENSGT00940000154977 #19	ENSGT00940000156908 #20	ENSGT00390000011717.gc #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27	ENSGT00940000158224	ENSGT00940000159542	ENSGT00860000136016	ENSGT00390000001846	ENSGT00840000130852.a.b	ENSGT00530000064276	ENSGT00940000159419	ENSGT00390000004451	ENSGT01030000234597.a.b.b.e.a.a	ENSGT00940000157068
Prairie vole	MODERN SPECIES	355	Tram1 (ENSMOCG00000022670) #7	Lactb2 (ENSMOCG00000019816) #8	Xkr9 (ENSMOCG00000000504) #9	Eya1 (ENSMOCG00000007882) #10	Msc (ENSMOCG00000017679) #11	Trpa1 (ENSMOCG00000004911) #12	Kcnb2 (ENSMOCG00000017006) #13	Terf1 (ENSMOCG00000010956) #14	Sbspon (ENSMOCG00000022550) #15	4930444P10Rik (ENSMOCG00000008670) #16	ENSMOCG00000002541 #17	Rdh10 (ENSMOCG00000014784) #18	Stau2 (ENSMOCG00000001037) #19	ENSMOCG00000007482 #20	ENSMOCG00000022694 #21	Tmem70 (ENSMOCG00000021313) #22	Ly96 (ENSMOCG00000016438) #23	Jph1 (ENSMOCG00000015433) #24	Hnf4g (ENSMOCG00000016906)	Zfhx4 (ENSMOCG00000021103)	Pex2 (ENSMOCG00000020937)	ENSMOCG00000019032	ENSMOCG00000016420	ENSMOCG00000014261	Pkia (ENSMOCG00000012790)	Zc2hc1a (ENSMOCG00000012476)	Il7 (ENSMOCG00000011670)	ENSMOCG00000019041	Car2 (ENSMOCG00000011119)	Car3 (ENSMOCG00000006267)	Car1 (ENSMOCG00000000956)
Northern American deer mouse	MODERN SPECIES	11	Xkr9 (ENSPEMG00000010792) #9	ENSPEMG00000011926	ENSPEMG00000028794	Eya1 (ENSPEMG00000015459) #10	Msc (ENSPEMG00000010582) #11	Trpa1 (ENSPEMG00000011394) #12	Kcnb2 (ENSPEMG00000012206) #13	Terf1 (ENSPEMG00000013150) #14	Sbspon (ENSPEMG00000017540) #15	4930444P10Rik (ENSPEMG00000001432) #16	ENSPEMG00000007818 #17	Rdh10 (ENSPEMG00000026926) #18	Stau2 (ENSPEMG00000012104) #19	Ube2w (ENSPEMG00000019057) #20	ENSPEMG00000009658 #21	Tmem70 (ENSPEMG00000012641) #22	Ly96 (ENSPEMG00000015591) #23	Jph1 (ENSPEMG00000019130) #24	Gdap1 (ENSPEMG00000028457) #25	Pi15 (ENSPEMG00000011138) #26	Crispld1 (ENSPEMG00000017885) #27	Hnf4g (ENSPEMG00000000555)	Zfhx4 (ENSPEMG00000017619)	ENSPEMG00000030247	Pex2 (ENSPEMG00000016945)	ENSPEMG00000016512	ENSPEMG00000016137	Pkia (ENSPEMG00000026223)	Zc2hc1a (ENSPEMG00000015507)	Il7 (ENSPEMG00000015008)	ENSPEMG00000030639
Cricetinae	ANCESTRAL SPECIES	31	ENSGT00950000183021.a.a.b	ENSGT00900000143241	ENSGT00510000046470.a.a.a.d.a #7	ENSGT00390000001710 #8	ENSGT01090000260093.a #9	ENSGT00950000182978.A.a.b.a #10	ENSGT00940000160438 #11	ENSGT00940000155268 #14	ENSGT00390000008325.b.b #15	ENSGT00700000106212 #16	ENSGT00950000182878.b.a.c.a.b.w.a #17	ENSGT00940000157063 #18	ENSGT00940000154977 #19	ENSGT00940000156908 #20	ENSGT00390000011717.gc #21	ENSGT00390000018710 #22	ENSGT00390000000742 #23	ENSGT00940000156130.b #24	ENSGT00940000159124 #25	ENSGT00940000158635 #26	ENSGT00940000156473 #27	ENSGT00940000158224	ENSGT00900000143810	ENSGT00940000159542	ENSGT00390000001846	ENSGT00840000130852.a.b	ENSGT00530000064276	ENSGT00940000159419	ENSGT00390000004451	ENSGT01030000234597.a.b.b.e.a.a	ENSGT00940000157068
Chinese hamster chok1gshd	MODERN SPECIES	136	Xkr9 (ENSCGRG00001015492) #9	ENSCGRG00001015809	Eya1 (ENSCGRG00001017253) #10	Msc (ENSCGRG00001020363) #11	ENSCGRG00001021021	Trpa1 (ENSCGRG00001000252) #12	Kcnb2 (ENSCGRG00001005381) #13	Terf1 (ENSCGRG00001011681) #14	Sbspon (ENSCGRG00001013329) #15	4930444P10Rik (ENSCGRG00001020570) #16	ENSCGRG00001021333 #17	Rdh10 (ENSCGRG00001022234) #18	Stau2 (ENSCGRG00001006522) #19	ENSCGRG00001022923 #20	Eloc (ENSCGRG00001001449) #21	Tmem70 (ENSCGRG00001018216) #22	Ly96 (ENSCGRG00001019128) #23	Jph1 (ENSCGRG00001020008) #24	Gdap1 (ENSCGRG00001020654) #25	ENSCGRG00001021316	Pi15 (ENSCGRG00001022091) #26	Crispld1 (ENSCGRG00001023292) #27	Hnf4g (ENSCGRG00001005690)	ENSCGRG00001015146	Zfhx4 (ENSCGRG00001011235)	PEX2 (ENSCGRG00001015243)	ENSCGRG00001015435	Pkia (ENSCGRG00001014887)	Zc2hc1a (ENSCGRG00001015367)	Il7 (ENSCGRG00001016068)	Stmn2 (ENSCGRG00001016949)