Mus	ANCESTRAL SPECIES	9	ENSGT00940000158335	ENSGT00940000162668	ENSGT00940000163848	ENSGT00390000003732	ENSGT00940000163888 #7	ENSGT00940000159818 #11	ENSGT00390000001134.b #12	ENSGT00950000182994.A.n.a #13	ENSGT00390000000141 #14	ENSGT00940000159611 #15	ENSGT00520000059318 #16	ENSGT00950000183121.b.b.b.a #17	ENSGT00530000063666.a #18	ENSGT00530000067269 #19	ENSGT00390000008591 #21	ENSGT00940000159242 #22	ENSGT00730000111075.b #23	ENSGT00940000161429 #24	ENSGT00390000011425.A #29	ENSGT00940000165353	ENSGT00940000156017 #30	ENSGT00730000111570 #31	ENSGT00950000183107.a.b.b #32	ENSGT01050000244948.d #33	ENSGT00950000182962.b.b.a #34	ENSGT00940000162488 #35	ENSGT00950000182832.D.b #36	ENSGT00940000161206 #37	ENSGT00950000183115.b.b	ENSGT01030000234518.D	ENSGT01100000263536.A.a.a.a
Shrew mouse	MODERN SPECIES	23	MGP_PahariEiJ_G0031905 #7	MGP_PahariEiJ_G0031904 #8	MGP_PahariEiJ_G0031903 #9	MGP_PahariEiJ_G0031902 #10	Klhl4 (MGP_PahariEiJ_G0031901) #11	Dach2 (MGP_PahariEiJ_G0031900) #12	Chm (MGP_PahariEiJ_G0031899) #13	Pof1b (MGP_PahariEiJ_G0031898) #14	Zfp711 (MGP_PahariEiJ_G0031897) #15	2010106E10Rik (MGP_PahariEiJ_G0031896) #16	Satl1 (MGP_PahariEiJ_G0031895) #17	Apool (MGP_PahariEiJ_G0031894) #18	4933403O08Rik (MGP_PahariEiJ_G0031893) #19	MGP_PahariEiJ_G0031892 #20	Hdx (MGP_PahariEiJ_G0031891) #21	Rps6ka6 (MGP_PahariEiJ_G0031890) #22	MGP_PahariEiJ_G0031889 #23	Pou3f4 (MGP_PahariEiJ_G0031888) #24	MGP_PahariEiJ_G0031887 #25	MGP_PahariEiJ_G0031885 #26	MGP_PahariEiJ_G0031886 #27	MGP_PahariEiJ_G0031884 #28	Gm6377 (MGP_PahariEiJ_G0031883) #29	Sh3bgrl (MGP_PahariEiJ_G0031882) #30	Hmgn5 (MGP_PahariEiJ_G0031881) #31	Brwd3 (MGP_PahariEiJ_G0031880) #32	MGP_PahariEiJ_G0031879 #33	Wmp (MGP_PahariEiJ_G0031878) #34	Tent5d (MGP_PahariEiJ_G0031877) #35	Chmp1b2 (MGP_PahariEiJ_G0031876) #36	Tbx22 (MGP_PahariEiJ_G0031875) #37
Mus_A	ANCESTRAL SPECIES	15	ENSGT00940000163020	ENSGT00940000162668	ENSGT00940000163848	ENSGT00390000003732	ENSGT00940000163888.e #7	ENSGT00940000159818 #11	ENSGT00390000001134.b #12	ENSGT00950000182994.A.n.a #13	ENSGT00390000000141 #14	ENSGT00940000159611 #15	ENSGT00520000059318 #16	ENSGT00950000183121.b.b.b.a #17	ENSGT00530000063666.a #18	ENSGT00530000067269 #19	ENSGT00390000008591 #21	ENSGT00940000159242 #22	ENSGT00730000111075.b #23	ENSGT00940000161429 #24	ENSGT00390000011425.A #29	ENSGT00940000165353	ENSGT00940000156017 #30	ENSGT00730000111570 #31	ENSGT00950000183107.a.b.b #32	ENSGT01050000244948.d #33	ENSGT00950000182962.b.b.a #34	ENSGT00940000162488 #35	ENSGT00950000182832.D.b #36	ENSGT00940000161206 #37	ENSGT00950000183115.b.b	ENSGT01030000234518.D	ENSGT01100000263536.A.a.a.a
Mus_B	ANCESTRAL SPECIES	14	ENSGT00940000163848	ENSGT00940000163020.o	ENSGT00390000003732	ENSGT00940000163888.e #7	ENSGT00940000163888.f #7	ENSGT00940000159818 #11	ENSGT00390000001134.b #12	ENSGT00950000182994.A.n.a #13	ENSGT00390000000141 #14	ENSGT00940000159611 #15	ENSGT00520000059318 #16	ENSGT00950000183121.b.b.b.a #17	ENSGT00530000063666.a #18	ENSGT00530000067269 #19	ENSGT00390000008591 #21	ENSGT00940000159242 #22	ENSGT00730000111075.b #23	ENSGT00940000161429 #24	ENSGT00390000011425.A #29	ENSGT00940000165353	ENSGT00940000156017 #30	ENSGT00730000111570 #31	ENSGT00950000183107.a.b.b #32	ENSGT01050000244948.d #33	ENSGT00950000182962.b.b.a #34	ENSGT00940000162488 #35	ENSGT00950000182832.D.b #36	ENSGT00940000161206 #37	ENSGT00950000183115.b.b	ENSGT01030000234518.D	ENSGT01100000263536.A.a.a.a
Mus_C	ANCESTRAL SPECIES	22	ENSGT00940000162927	ENSGT00940000158335	ENSGT00940000162668	ENSGT00940000163020.o	ENSGT00940000163888.e #7	ENSGT00940000163888.f #7	ENSGT00940000159818 #11	ENSGT00390000001134.b #12	ENSGT00390000000141 #14	ENSGT00940000159611 #15	ENSGT00520000059318 #16	ENSGT00950000183121.b.b.b.a #17	ENSGT00530000063666.a #18	ENSGT00530000067269 #19	ENSGT00390000008591 #21	ENSGT00940000159242 #22	ENSGT00730000111075.b #23	ENSGT00940000161429 #24	ENSGT00390000011425.A #29	ENSGT00940000165353	ENSGT00940000156017 #30	ENSGT00730000111570 #31	ENSGT00950000183107.a.b.b #32	ENSGT01050000244948.d #33	ENSGT00950000182962.b.b.a #34	ENSGT00940000162488 #35	ENSGT00950000182832.D.b #36	ENSGT00940000161206 #37	ENSGT00950000183115.b.b	ENSGT01030000234518.D	ENSGT01100000263536.A.a.a.a
spretus	MODERN SPECIES	19	Cpxcr1 (MGP_SPRETEiJ_G0034531)	MGP_SPRETEiJ_G0034530	Ube2dnl2 (MGP_SPRETEiJ_G0034529) #7	Ube2dnl1 (MGP_SPRETEiJ_G0034528) #7	Klhl4 (MGP_SPRETEiJ_G0034527) #11	Dach2 (MGP_SPRETEiJ_G0034526) #12	Chm (MGP_SPRETEiJ_G0034525) #13	Pof1b (MGP_SPRETEiJ_G0034524) #14	Zfp711 (MGP_SPRETEiJ_G0034523) #15	2010106E10Rik (MGP_SPRETEiJ_G0034522) #16	Satl1 (MGP_SPRETEiJ_G0034521) #17	Apool (MGP_SPRETEiJ_G0034520) #18	4933403O08Rik (MGP_SPRETEiJ_G0034519) #19	Hdx (MGP_SPRETEiJ_G0034517) #21	MGP_SPRETEiJ_G0034516	Rps6ka6 (MGP_SPRETEiJ_G0034515) #22	MGP_SPRETEiJ_G0034514	Cylc1 (MGP_SPRETEiJ_G0034513) #23	Pou3f4 (MGP_SPRETEiJ_G0034512) #24	Gm6377 (MGP_SPRETEiJ_G0034511) #29	Sh3bgrl (MGP_SPRETEiJ_G0034510) #30	MGP_SPRETEiJ_G0034509 #31	MGP_SPRETEiJ_G0034508 #32	MGP_SPRETEiJ_G0034507 #33	MGP_SPRETEiJ_G0034506 #34	Tent5d (MGP_SPRETEiJ_G0034505) #35	Chmp1b2 (MGP_SPRETEiJ_G0034504) #36	Tbx22 (MGP_SPRETEiJ_G0034503) #37	Itm2a (MGP_SPRETEiJ_G0034502)	Gpr174 (MGP_SPRETEiJ_G0034501)	P2ry10b (MGP_SPRETEiJ_G0034500)
Steppe mouse	MODERN SPECIES	1817																Rps6ka6 (ENSMSIG00000028049) #22
Mouse	MODERN SPECIES	37	Cpxcr1 (ENSMUSG00000072995)	Ube2dnl2 (ENSMUSG00000047079) #7	Ube2dnl1 (ENSMUSG00000050435) #7	Klhl4 (ENSMUSG00000025597) #11	Dach2 (ENSMUSG00000025592) #12	Chm (ENSMUSG00000025531) #13	Pof1b (ENSMUSG00000034607) #14	Zfp711 (ENSMUSG00000025529) #15	2010106E10Rik (ENSMUSG00000025528) #16	Satl1 (ENSMUSG00000025527) #17	Apool (ENSMUSG00000025525) #18	4933403O08Rik (ENSMUSG00000079460) #19	Tex16 (ENSMUSG00000034555) #20	Gm45194 (ENSMUSG00000109156)	Hdx (ENSMUSG00000034551) #21	Rps6ka6 (ENSMUSG00000025665) #22	Cylc1 (ENSMUSG00000073001) #23	Pou3f4 (ENSMUSG00000056854) #24	Gm6377 (ENSMUSG00000048621) #29	Sh3bgrl (ENSMUSG00000031246) #30	Hmgn5 (ENSMUSG00000031245) #31	Brwd3 (ENSMUSG00000063663) #32	Wmp (ENSMUSG00000073006) #34	Tent5d (ENSMUSG00000073007) #35	Chmp1b2 (ENSMUSG00000031242) #36	Tbx22 (ENSMUSG00000031241) #37	Itm2a (ENSMUSG00000031239)	Gpr174 (ENSMUSG00000073008)	P2ry10b (ENSMUSG00000054293)	P2ry10 (ENSMUSG00000050921)	Lpar4 (ENSMUSG00000049929)
Ryukyu mouse	MODERN SPECIES	19	MGP_CAROLIEiJ_G0033365	Cpxcr1 (MGP_CAROLIEiJ_G0033364)	MGP_CAROLIEiJ_G0033363 #7	MGP_CAROLIEiJ_G0033362 #7	Klhl4 (MGP_CAROLIEiJ_G0033361) #11	Dach2 (MGP_CAROLIEiJ_G0033360) #12	Chm (MGP_CAROLIEiJ_G0033359) #13	Pof1b (MGP_CAROLIEiJ_G0033358) #14	Zfp711 (MGP_CAROLIEiJ_G0033357) #15	2010106E10Rik (MGP_CAROLIEiJ_G0033356) #16	Satl1 (MGP_CAROLIEiJ_G0033355) #17	Apool (MGP_CAROLIEiJ_G0033354) #18	4933403O08Rik (MGP_CAROLIEiJ_G0033353) #19	MGP_CAROLIEiJ_G0033352 #20	Hdx (MGP_CAROLIEiJ_G0033351) #21	Rps6ka6 (MGP_CAROLIEiJ_G0033350) #22	Cylc1 (MGP_CAROLIEiJ_G0033349) #23	Pou3f4 (MGP_CAROLIEiJ_G0033348) #24	Gm6377 (MGP_CAROLIEiJ_G0033347) #29	Sh3bgrl (MGP_CAROLIEiJ_G0033346) #30	MGP_CAROLIEiJ_G0033345 #31	Brwd3 (MGP_CAROLIEiJ_G0033344) #32	MGP_CAROLIEiJ_G0033343 #33	Wmp (MGP_CAROLIEiJ_G0033342) #34	Tent5d (MGP_CAROLIEiJ_G0033341) #35	Chmp1b2 (MGP_CAROLIEiJ_G0033340) #36	Tbx22 (MGP_CAROLIEiJ_G0033339) #37	Itm2a (MGP_CAROLIEiJ_G0033338)	Gpr174 (MGP_CAROLIEiJ_G0033337)	P2ry10b (MGP_CAROLIEiJ_G0033336)	P2ry10 (MGP_CAROLIEiJ_G0033335)