Glires	ANCESTRAL SPECIES	2	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d	ENSGT00940000158837	ENSGT01050000244950.a.a.a #7	ENSGT00940000154143.f #8	ENSGT00640000091497.a #9	ENSGT00390000011053 #10	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #25	ENSGT00390000016696 #26	ENSGT00390000007467 #27	ENSGT00910000147904	ENSGT00390000004601 #28	ENSGT00390000007133 #29	ENSGT00940000157784 #30	ENSGT00940000163036 #31	ENSGT00940000156556 #32	ENSGT00940000159755 #33	ENSGT00520000055635.c.a #34	ENSGT00940000161118 #35	ENSGT00390000003024 #36
Rodentia	ANCESTRAL SPECIES	2	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d	ENSGT00940000158837	ENSGT01050000244950.a.a.a #7	ENSGT00940000154143.f #8	ENSGT00640000091497.a #9	ENSGT00390000011053 #10	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #25	ENSGT00390000016696 #26	ENSGT00390000007467 #27	ENSGT00910000147904	ENSGT00390000004601 #28	ENSGT00390000007133 #29	ENSGT00940000157784 #30	ENSGT00940000163036 #31	ENSGT00940000156556 #32	ENSGT00940000159755 #33	ENSGT00520000055635.c.a #34	ENSGT00940000161118 #35	ENSGT00390000003024 #36
Rodentia_B	ANCESTRAL SPECIES	2	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d	ENSGT00940000158837	ENSGT01050000244950.a.a.a #7	ENSGT00940000154143.f #8	ENSGT00640000091497.a #9	ENSGT00390000011053 #10	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #25	ENSGT00390000016696 #26	ENSGT00390000007467 #27	ENSGT00910000147904	ENSGT00390000004601 #28	ENSGT00390000007133 #29	ENSGT00940000157784 #30	ENSGT00940000163036 #31	ENSGT00940000156556 #32	ENSGT00940000159755 #33	ENSGT00520000055635.c.a #34	ENSGT00940000161118 #35	ENSGT00390000003024 #36
Myomorpha	ANCESTRAL SPECIES	14	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d	ENSGT00940000158837	ENSGT01050000244950.a.a.a #7	ENSGT00940000154143.f #8	ENSGT00640000091497.a #9	ENSGT00390000011053 #10	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #25	ENSGT00390000016696 #26	ENSGT00390000007467 #27	ENSGT00910000147904	ENSGT00390000004601 #28	ENSGT00390000007133 #29	ENSGT00940000157784 #30	ENSGT00940000163036 #31	ENSGT00940000156556 #32	ENSGT00940000159755 #33	ENSGT00520000055635.c.a #34	ENSGT00940000161118 #35	ENSGT00390000003024 #36
Muroidea	ANCESTRAL SPECIES	11	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d	ENSGT00940000158837	ENSGT01050000244950.a.a.a #7	ENSGT00940000154143.f #8	ENSGT00640000091497.a #9	ENSGT00390000011053 #10	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #25	ENSGT00390000016696 #26	ENSGT00390000007467 #27	ENSGT00910000147904	ENSGT00390000004601 #28	ENSGT00390000007133 #29	ENSGT00940000157784 #30	ENSGT00940000163036 #31	ENSGT00940000156556 #32	ENSGT00940000159755 #33	ENSGT00520000055635.c.a #34	ENSGT00940000161118 #35	ENSGT00390000003024 #36
Muroidea_A	ANCESTRAL SPECIES	17	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d	ENSGT00940000158837	ENSGT01050000244950.a.a.a #7	ENSGT00940000154143.f #8	ENSGT00640000091497.a #9	ENSGT00390000011053 #10	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #25	ENSGT00390000016696 #26	ENSGT00390000007467 #27	ENSGT00910000147904	ENSGT00390000004601 #28	ENSGT00390000007133.g.b #29	ENSGT00940000157784 #30	ENSGT00940000163036 #31	ENSGT00940000156556 #32	ENSGT00940000159755 #33	ENSGT00520000055635.c.a #34	ENSGT00940000161118 #35	ENSGT00390000003024 #36
Murinae	ANCESTRAL SPECIES	13	ENSGT00940000154578.A.d	ENSGT00940000158837	ENSGT01050000244950.a.a.a #7	ENSGT00940000154143.f #8	ENSGT00640000091497.a #9	ENSGT00390000011053 #10	ENSGT00940000155717.i.a #11	ENSGT00940000155717.i.b.a.a.b.b #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #25	ENSGT00390000016696 #26	ENSGT00390000007467 #27	ENSGT00910000147904	ENSGT00390000004601 #28	ENSGT00390000007133.g.b #29	ENSGT00940000157784 #30	ENSGT00940000163036 #31	ENSGT00940000156556 #32	ENSGT00940000159755 #33	ENSGT00520000055635.c.a #34	ENSGT00940000161118 #35	ENSGT00390000003024 #36
Mus	ANCESTRAL SPECIES	13	ENSGT00940000154578.A.d	ENSGT00940000158837	ENSGT01050000244950.a.a.a #7	ENSGT00940000154143.f #8	ENSGT00640000091497.a #9	ENSGT00390000011053 #10	ENSGT00940000155717.i.a #11	ENSGT00940000155717.i.b.a.a.b.b #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #25	ENSGT00390000016696 #26	ENSGT00390000007467 #27	ENSGT00910000147904	ENSGT00390000004601 #28	ENSGT00390000007133.g.b #29	ENSGT00940000157784 #30	ENSGT00940000163036 #31	ENSGT00940000156556 #32	ENSGT00940000159755 #33	ENSGT00520000055635.c.a #34	ENSGT00940000161118 #35	ENSGT00390000003024 #36
Mus_A	ANCESTRAL SPECIES	18	ENSGT00940000154578.A.d	ENSGT00940000158837	ENSGT01050000244950.a.a.a #7	ENSGT00940000154143.f #8	ENSGT00640000091497.a #9	ENSGT00390000011053 #10	ENSGT00940000155717.i.a #11	ENSGT00940000155717.i.b.a.a.b.b #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #25	ENSGT00390000016696.x #26	ENSGT00390000007467 #27	ENSGT00910000147904	ENSGT00390000004601 #28	ENSGT00390000007133.g.b #29	ENSGT00940000157784 #30	ENSGT00940000163036 #31	ENSGT00940000156556 #32	ENSGT00940000159755 #33	ENSGT00520000055635.c.a #34	ENSGT00940000161118 #35	ENSGT00390000003024 #36
Mus_B	ANCESTRAL SPECIES	18	ENSGT00940000158837	ENSGT01050000244950.a.a.a #7	ENSGT00940000154143.f #8	ENSGT00640000091497.a #9	ENSGT00390000011053 #10	ENSGT00940000155717.i.a #11	ENSGT00940000155717.i.b.a.a.b.a #13	ENSGT00940000155717.i.b.a.a.b.b #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #25	ENSGT00390000016696.x #26	ENSGT00390000007467 #27	ENSGT00910000147904	ENSGT00390000004601 #28	ENSGT00390000007133.g.b #29	ENSGT00940000157784 #30	ENSGT00940000163036 #31	ENSGT00940000156556 #32	ENSGT00940000159755 #33	ENSGT00520000055635.c.a #34	ENSGT00940000161118 #35	ENSGT00390000003024 #36
Mus_C	ANCESTRAL SPECIES	12	ENSGT00940000158837	ENSGT01050000244950.a.a.a #7	ENSGT00940000154143.f #8	ENSGT00640000091497.a #9	ENSGT00390000011053 #10	ENSGT00940000155717.i.a #11	ENSGT00940000155717.i.b.a.a.b.a #13	ENSGT00940000155717.i.b.a.a.b.b #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #25	ENSGT00390000016696.x #26	ENSGT00390000007467 #27	ENSGT00910000147904	ENSGT00390000004601 #28	ENSGT00390000007133.h ##29	ENSGT00390000007133.g.b #29	ENSGT00940000157784 #30	ENSGT00940000163036 #31	ENSGT00940000156556 #32	ENSGT00940000159755 #33	ENSGT00520000055635.c.a #34	ENSGT00940000161118 #35
spretus	MODERN SPECIES	7	Kpna1 (MGP_SPRETEiJ_G0021607) #7	Wdr5b (MGP_SPRETEiJ_G0021608) #8	Fam162a (MGP_SPRETEiJ_G0021609) #9	Ccdc58 (MGP_SPRETEiJ_G0021610) #10	MGP_SPRETEiJ_G0021611 #11	MGP_SPRETEiJ_G0021612 #12	MGP_SPRETEiJ_G0021613 #13	Stfa3 (MGP_SPRETEiJ_G0021615) #14	Casr (MGP_SPRETEiJ_G0021616) #15	Cd86 (MGP_SPRETEiJ_G0021617) #16	Ildr1 (MGP_SPRETEiJ_G0021618) #17	Slc15a2 (MGP_SPRETEiJ_G0021619) #18	Eaf2 (MGP_SPRETEiJ_G0021620) #19	Iqcb1 (MGP_SPRETEiJ_G0021621) #20	Golgb1 (MGP_SPRETEiJ_G0021622) #21	Hcls1 (MGP_SPRETEiJ_G0021623) #22	Fbxo40 (MGP_SPRETEiJ_G0021624) #23	Polq (MGP_SPRETEiJ_G0021625) #24	Stxbp5l (MGP_SPRETEiJ_G0021626) #25	Gtf2e1 (MGP_SPRETEiJ_G0021627) #26	Rabl3 (MGP_SPRETEiJ_G0021628) #27	Hgd (MGP_SPRETEiJ_G0021629) #28	Ndufb4 (MGP_SPRETEiJ_G0021630) #29	Fstl1 (MGP_SPRETEiJ_G0021631) #30	Btnl12 (MGP_SPRETEiJ_G0021632) #31	Lrrc58 (MGP_SPRETEiJ_G0021633) #32	Gpr156 (MGP_SPRETEiJ_G0021634) #33	Gsk3b (MGP_SPRETEiJ_G0021635) #34	Nr1i2 (MGP_SPRETEiJ_G0021636) #35	Cfap91 (MGP_SPRETEiJ_G0021637) #36	MGP_SPRETEiJ_G0021638 #37
Steppe mouse	MODERN SPECIES	19							Casr (ENSMSIG00000016850) #15	ENSMSIG00000016961	ENSMSIG00000016968	Cd86 (ENSMSIG00000016983) #16	Ildr1 (ENSMSIG00000017015) #17	Slc15a2 (ENSMSIG00000017096) #18	Eaf2 (ENSMSIG00000017229) #19	Iqcb1 (ENSMSIG00000017244) #20	Golgb1 (ENSMSIG00000017297) #21	Hcls1 (ENSMSIG00000017414) #22	Fbxo40 (ENSMSIG00000017504) #23	Polq (ENSMSIG00000017530) #24	ENSMSIG00000017745	Stxbp5l (ENSMSIG00000017754) #25	ENSMSIG00000018266	Gtf2e1 (ENSMSIG00000018274) #26	Rabl3 (ENSMSIG00000018289) #27	ENSMSIG00000018320	Hgd (ENSMSIG00000018328) #28	ENSMSIG00000018377 ##29	ENSMSIG00000018386	Fstl1 (ENSMSIG00000018393) #30	Btnl12 (ENSMSIG00000018429) #31	Lrrc58 (ENSMSIG00000018454) #32	Gpr156 (ENSMSIG00000018477) #33
Mouse	MODERN SPECIES	7	Cstdc4 (ENSMUSG00000079597) ##14	Csta3 (ENSMUSG00000094733) ##14	Csta2 (ENSMUSG00000095620) ##14	Stfa1 (ENSMUSG00000071562) ##14	Cstdc6 (ENSMUSG00000079594) ##14	Cstdc5 (ENSMUSG00000071561) ##14	Stfa2 (ENSMUSG00000022902) #13	Stfa3 (ENSMUSG00000054905) #14	Casr (ENSMUSG00000051980) #15	Cd86 (ENSMUSG00000022901) #16	Ildr1 (ENSMUSG00000022900) #17	Slc15a2 (ENSMUSG00000022899) #18	Eaf2 (ENSMUSG00000022838) #19	Iqcb1 (ENSMUSG00000022837) #20	Golgb1 (ENSMUSG00000034243) #21	Hcls1 (ENSMUSG00000022831) #22	Fbxo40 (ENSMUSG00000047746) #23	Polq (ENSMUSG00000034206) #24	Stxbp5l (ENSMUSG00000022829) #25	Gtf2e1 (ENSMUSG00000022828) #26	Rabl3 (ENSMUSG00000022827) #27	Hgd (ENSMUSG00000022821) #28	Ndufb4 (ENSMUSG00000022820) #29	Fstl1 (ENSMUSG00000022816) #30	Btnl12 (ENSMUSG00000108763) #31	Lrrc58 (ENSMUSG00000034158) #32	Gpr156 (ENSMUSG00000046961) #33	Gsk3b (ENSMUSG00000022812) #34	Nr1i2 (ENSMUSG00000022809) #35	Cfap91 (ENSMUSG00000022805) #36	Cox17 (ENSMUSG00000046516) #37
Ryukyu mouse	MODERN SPECIES	7	Parp9 (MGP_CAROLIEiJ_G0020708)	Kpna1 (MGP_CAROLIEiJ_G0020709) #7	Wdr5b (MGP_CAROLIEiJ_G0020710) #8	Fam162a (MGP_CAROLIEiJ_G0020711) #9	Ccdc58 (MGP_CAROLIEiJ_G0020712) #10	MGP_CAROLIEiJ_G0020713 #11	MGP_CAROLIEiJ_G0020714	Stfa3 (MGP_CAROLIEiJ_G0020715) #14	Casr (MGP_CAROLIEiJ_G0020716) #15	Cd86 (MGP_CAROLIEiJ_G0020717) #16	Ildr1 (MGP_CAROLIEiJ_G0020718) #17	Slc15a2 (MGP_CAROLIEiJ_G0020719) #18	Eaf2 (MGP_CAROLIEiJ_G0020720) #19	Iqcb1 (MGP_CAROLIEiJ_G0020721) #20	Golgb1 (MGP_CAROLIEiJ_G0020722) #21	Hcls1 (MGP_CAROLIEiJ_G0020723) #22	Fbxo40 (MGP_CAROLIEiJ_G0020724) #23	Polq (MGP_CAROLIEiJ_G0020725) #24	MGP_CAROLIEiJ_G0020726 #25	MGP_CAROLIEiJ_G0020727 ##26	Rabl3 (MGP_CAROLIEiJ_G0020728) #27	Hgd (MGP_CAROLIEiJ_G0020729) #28	Ndufb4 (MGP_CAROLIEiJ_G0020730) #29	Fstl1 (MGP_CAROLIEiJ_G0020731) #30	Btnl12 (MGP_CAROLIEiJ_G0020732) #31	MGP_CAROLIEiJ_G0020733 #32	MGP_CAROLIEiJ_G0020734 #32	Gpr156 (MGP_CAROLIEiJ_G0020735) #33	Gsk3b (MGP_CAROLIEiJ_G0020736) #34	Nr1i2 (MGP_CAROLIEiJ_G0020737) #35	Cfap91 (MGP_CAROLIEiJ_G0020738) #36
Shrew mouse	MODERN SPECIES	3	Parp14 (MGP_PahariEiJ_G0016409)	Dtx3l (MGP_PahariEiJ_G0016410)	MGP_PahariEiJ_G0016411	Kpna1 (MGP_PahariEiJ_G0016412) #7	Wdr5b (MGP_PahariEiJ_G0016413) #8	Fam162a (MGP_PahariEiJ_G0016414) #9	Ccdc58 (MGP_PahariEiJ_G0016415) #10	MGP_PahariEiJ_G0016416	Casr (MGP_PahariEiJ_G0016417) #15	Cd86 (MGP_PahariEiJ_G0016418) #16	Ildr1 (MGP_PahariEiJ_G0016419) #17	Slc15a2 (MGP_PahariEiJ_G0016420) #18	Eaf2 (MGP_PahariEiJ_G0016421) #19	Iqcb1 (MGP_PahariEiJ_G0016422) #20	Golgb1 (MGP_PahariEiJ_G0016423) #21	Hcls1 (MGP_PahariEiJ_G0016424) #22	Fbxo40 (MGP_PahariEiJ_G0016425) #23	Polq (MGP_PahariEiJ_G0016426) #24	Stxbp5l (MGP_PahariEiJ_G0016427) #25	Gtf2e1 (MGP_PahariEiJ_G0016428) #26	Rabl3 (MGP_PahariEiJ_G0016429) #27	Hgd (MGP_PahariEiJ_G0016430) #28	Ndufb4 (MGP_PahariEiJ_G0016431) #29	Fstl1 (MGP_PahariEiJ_G0016432) #30	Btnl12 (MGP_PahariEiJ_G0016433) #31	Lrrc58 (MGP_PahariEiJ_G0016434) #32	Gpr156 (MGP_PahariEiJ_G0016435) #33	Gsk3b (MGP_PahariEiJ_G0016436) #34	Nr1i2 (MGP_PahariEiJ_G0016437) #35	Cfap91 (MGP_PahariEiJ_G0016438) #36	MGP_PahariEiJ_G0016439 #37
Rat	MODERN SPECIES	2	Stfa2 (ENSRNOG00000064199) #13	LOC120095659 (ENSRNOG00000068561) #13	Stfa2l2 (ENSRNOG00000063669) #13	Cstdc4 (ENSRNOG00000063692)	Stfa2l1 (ENSRNOG00000033929) ##14	ENSRNOG00000066258 ##14	LOC689230 (ENSRNOG00000068554) ##14	Stfa3 (ENSRNOG00000033933) #14	Casr (ENSRNOG00000002265) #15	Cd86 (ENSRNOG00000038835) #16	Slc15a2 (ENSRNOG00000002305) #18	Ildr1 (ENSRNOG00000002289) #17	Eaf2 (ENSRNOG00000002350) #19	Iqcb1 (ENSRNOG00000038868) #20	Golgb1 (ENSRNOG00000030314) #21	Hcls1 (ENSRNOG00000038881) #22	Fbxo40 (ENSRNOG00000002459) #23	Gng10-ps1 (ENSRNOG00000070865)	Polq (ENSRNOG00000002471) #24	Stxbp5l (ENSRNOG00000002496) #25	ENSRNOG00000068521	Gtf2e1 (ENSRNOG00000026008) #26	Rabl3 (ENSRNOG00000026085) #27	Hgd (ENSRNOG00000002701) #28	Ndufb4 (ENSRNOG00000002721) ##29	LOC102552404 (ENSRNOG00000068993) #31	Lrrc58 (ENSRNOG00000027151) #32	ENSRNOG00000064655	Fstl1 (ENSRNOG00000002746) #30	Gpr156 (ENSRNOG00000002797) #33	Gsk3b (ENSRNOG00000002833) #34
Cricetidae	ANCESTRAL SPECIES	16	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d	ENSGT00940000158837	ENSGT01050000244950.a.a.a #7	ENSGT00940000154143.f #8	ENSGT00640000091497.a #9	ENSGT00390000011053 #10	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a.h #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #25	ENSGT00390000016696 #26	ENSGT00390000007467 #27	ENSGT00390000004601 #28	ENSGT00390000007133.h ##29	ENSGT00940000157784 #30	ENSGT00940000163036 #31	ENSGT00940000156556 #32	ENSGT00940000159755 #33	ENSGT00520000055635.c.a #34	ENSGT00940000161118 #35	ENSGT00390000003024 #36	ENSGT00390000002329 #37
Cricetinae	ANCESTRAL SPECIES	10	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d	ENSGT00940000158837	ENSGT01050000244950.a.a.a #7	ENSGT00940000154143.f #8	ENSGT00640000091497.a #9	ENSGT00390000011053 #10	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a.h #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #25	ENSGT00390000016696 #26	ENSGT00390000007467 #27	ENSGT00390000004601 #28	ENSGT00390000007133.h ##29	ENSGT00940000157784 #30	ENSGT00940000163036 #31	ENSGT00940000156556 #32	ENSGT00940000159755 #33	ENSGT00520000055635.c.a #34	ENSGT00940000161118 #35	ENSGT00390000003024 #36	ENSGT00390000002329 #37
Chinese hamster chok1gshd	MODERN SPECIES	382	Parp14 (ENSCGRG00001006699)	ENSCGRG00001019002	Parp9 (ENSCGRG00001020003)	Kpna1 (ENSCGRG00001022843) #7	ENSCGRG00001004715	ENSCGRG00001002066 #9	Ccdc58 (ENSCGRG00001007596) #10	ENSCGRG00001013254 #14	Casr (ENSCGRG00001016487) #15	Cd86 (ENSCGRG00001021687) #16	Ildr1 (ENSCGRG00001002658) #17	Slc15a2 (ENSCGRG00001019056) #18	Eaf2 (ENSCGRG00001001162) #19	Iqcb1 (ENSCGRG00001004386) #20	Golgb1 (ENSCGRG00001012572) #21	Hcls1 (ENSCGRG00001024176) #22	Fbxo40 (ENSCGRG00001023973) #23	Polq (ENSCGRG00001013184) #24	Stxbp5l (ENSCGRG00001011397) #25	Gtf2e1 (ENSCGRG00001013030) #26	Rabl3 (ENSCGRG00001021537) #27	Hgd (ENSCGRG00001019124) #28	ENSCGRG00001016366 ##29	Fstl1 (ENSCGRG00001019352) #30	Btnl12 (ENSCGRG00001009585) #31	Lrrc58 (ENSCGRG00001011907) #32	Gpr156 (ENSCGRG00001018982) #33	ENSCGRG00001024473	Gsk3b (ENSCGRG00001011596) #34	Nr1i2 (ENSCGRG00001015366) #35	Cfap91 (ENSCGRG00001012643) #36
Golden Hamster	MODERN SPECIES	645	ENSMAUG00000021258	Dtx3l (ENSMAUG00000017541)	Parp9 (ENSMAUG00000002664)	ENSMAUG00000020889 #7	Wdr5b (ENSMAUG00000007468) #8	Fam162a (ENSMAUG00000022254) #9	Ccdc58 (ENSMAUG00000020065) #10	ENSMAUG00000011953 #14	Casr (ENSMAUG00000007398) #15	Cd86 (ENSMAUG00000019431) #16	Ildr1 (ENSMAUG00000003496) #17	ENSMAUG00000017415 #18	Eaf2 (ENSMAUG00000019901) #19	Iqcb1 (ENSMAUG00000005080) #20	Golgb1 (ENSMAUG00000015772) #21	ENSMAUG00000014613 #22	ENSMAUG00000015080 #24	Stxbp5l (ENSMAUG00000001984) #25	Gtf2e1 (ENSMAUG00000020149) #26	Rabl3 (ENSMAUG00000013022) #27	Hgd (ENSMAUG00000016960) #28	Ndufb4 (ENSMAUG00000013448) ##29	Fstl1 (ENSMAUG00000002118) #30	Btnl12 (ENSMAUG00000010510) #31	Lrrc58 (ENSMAUG00000014544) #32	Gpr156 (ENSMAUG00000014863) #33	Gsk3b (ENSMAUG00000015683) #34	Nr1i2 (ENSMAUG00000011479) #35	Cfap91 (ENSMAUG00000008338) #36	Cox17 (ENSMAUG00000020841) #37	ENSMAUG00000020930
Cricetidae_B	ANCESTRAL SPECIES	13	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d	ENSGT00940000158837	ENSGT01050000244950.a.a.a #7	ENSGT00940000154143.f #8	ENSGT00640000091497.a #9	ENSGT00390000011053 #10	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a.h #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #25	ENSGT00390000016696 #26	ENSGT00390000007467 #27	ENSGT00390000004601 #28	ENSGT00390000007133.h ##29	ENSGT00390000007133.g.b #29	ENSGT00940000157784 #30	ENSGT00940000163036 #31	ENSGT00940000156556 #32	ENSGT00940000159755 #33	ENSGT00520000055635.c.a #34	ENSGT00940000161118 #35	ENSGT00390000003024 #36
Northern American deer mouse	MODERN SPECIES	3	Parp14 (ENSPEMG00000008286)	Dtx3l (ENSPEMG00000009226)	Parp9 (ENSPEMG00000010239)	Kpna1 (ENSPEMG00000018248) #7	Wdr5b (ENSPEMG00000004447) #8	ENSPEMG00000005712 #9	Ccdc58 (ENSPEMG00000017093) #10	ENSPEMG00000003391 #14	Casr (ENSPEMG00000008816) #15	Cd86 (ENSPEMG00000001872) #16	Ildr1 (ENSPEMG00000001729) #17	Slc15a2 (ENSPEMG00000018398) #18	Eaf2 (ENSPEMG00000023833) #19	Iqcb1 (ENSPEMG00000007062) #20	Golgb1 (ENSPEMG00000023907) #21	Hcls1 (ENSPEMG00000000520) #22	Fbxo40 (ENSPEMG00000010564) #23	Polq (ENSPEMG00000017429) #24	Stxbp5l (ENSPEMG00000004327) #25	Gtf2e1 (ENSPEMG00000017575) #26	Rabl3 (ENSPEMG00000016913) #27	Hgd (ENSPEMG00000011187) #28	ENSPEMG00000017143 #29	Fstl1 (ENSPEMG00000001577) #30	Btnl12 (ENSPEMG00000018750) #31	ENSPEMG00000025730 #32	Gpr156 (ENSPEMG00000010041) #33	Gsk3b (ENSPEMG00000013248) #34	Nr1i2 (ENSPEMG00000011080) #35	Cfap91 (ENSPEMG00000012934) #36	Cox17 (ENSPEMG00000021484) #37
Prairie vole	MODERN SPECIES	7	Col8a1 (ENSMOCG00000012701)	Cmss1 (ENSMOCG00000021937)	Filip1l (ENSMOCG00000007107)	ENSMOCG00000013599	Tmem30c (ENSMOCG00000015756)	ENSMOCG00000001124	Tbc1d23 (ENSMOCG00000016619)	Nit2 (ENSMOCG00000018553)	Tomm70a (ENSMOCG00000021240)	ENSMOCG00000021737	Lnp1 (ENSMOCG00000013183)	ENSMOCG00000009243	Tmem45a (ENSMOCG00000010510)	Adgrg7 (ENSMOCG00000021146)	ENSMOCG00000013742	ENSMOCG00000022104 #22	Fbxo40 (ENSMOCG00000008639) #23	Polq (ENSMOCG00000016969) #24	Stxbp5l (ENSMOCG00000000855) #25	ENSMOCG00000020694 #26	Rabl3 (ENSMOCG00000015237) #27	Hgd (ENSMOCG00000002971) #28	Ndufb4 (ENSMOCG00000017175) ##29	Fstl1 (ENSMOCG00000019386) #30	Btnl12 (ENSMOCG00000013857) #31	Lrrc58 (ENSMOCG00000021625) #32	Gpr156 (ENSMOCG00000011836) #33	Gsk3b (ENSMOCG00000003748) #34	Nr1i2 (ENSMOCG00000010007) #35	Cfap91 (ENSMOCG00000022057) #36	ENSMOCG00000015088 #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1215	Parp14 (ENSNGAG00000024058)	Dtx3l (ENSNGAG00000024127)	Parp9 (ENSNGAG00000013531)	Kpna1 (ENSNGAG00000019753) #7	Wdr5b (ENSNGAG00000013754) #8	Fam162a (ENSNGAG00000024111) #9	Ccdc58 (ENSNGAG00000021453) #10	ENSNGAG00000000990 #14	Casr (ENSNGAG00000015593) #15	ENSNGAG00000012890 #16	Ildr1 (ENSNGAG00000013791) #17	Slc15a2 (ENSNGAG00000020032) #18	Eaf2 (ENSNGAG00000018733) #19	Iqcb1 (ENSNGAG00000024265) #20	Golgb1 (ENSNGAG00000020167) #21	Hcls1 (ENSNGAG00000022704) #22	Fbxo40 (ENSNGAG00000004209) #23	Polq (ENSNGAG00000024216) #24	Stxbp5l (ENSNGAG00000015316) #25	Gtf2e1 (ENSNGAG00000018181) #26	Rabl3 (ENSNGAG00000001939) #27	Hgd (ENSNGAG00000021388) #28	Ndufb4 (ENSNGAG00000019446) #29	Fstl1 (ENSNGAG00000009480) #30	Btnl12 (ENSNGAG00000023554) #31	Lrrc58 (ENSNGAG00000023258) #32	Gpr156 (ENSNGAG00000010795) #33	Gsk3b (ENSNGAG00000002108) #34	Nr1i2 (ENSNGAG00000023122) #35	Cfap91 (ENSNGAG00000022679) #36	Cox17 (ENSNGAG00000024232) #37
Lesser Egyptian jerboa	MODERN SPECIES	137		Dtx3l (ENSJJAG00000023333)	Parp9 (ENSJJAG00000023676)	Kpna1 (ENSJJAG00000000134) #7	Wdr5b (ENSJJAG00000000297) #8	Fam162a (ENSJJAG00000000903) #9	ENSJJAG00000003637 #10	ENSJJAG00000005528 #14	Casr (ENSJJAG00000009683) #15	ENSJJAG00000010789 #16	Ildr1 (ENSJJAG00000011606) #17	Slc15a2 (ENSJJAG00000013093) #18	ENSJJAG00000014936	Iqcb1 (ENSJJAG00000015154) #20	Golgb1 (ENSJJAG00000016394) #21	Hcls1 (ENSJJAG00000015789) #22	Fbxo40 (ENSJJAG00000016012) #23	Stxbp5l (ENSJJAG00000019547) #25	Gtf2e1 (ENSJJAG00000023373) #26	Rabl3 (ENSJJAG00000023553) #27	Hgd (ENSJJAG00000000068) #28	Ndufb4 (ENSJJAG00000000112) #29	Fstl1 (ENSJJAG00000000598) #30	Btnl12 (ENSJJAG00000003184) #31	Lrrc58 (ENSJJAG00000005130) #32	Gpr156 (ENSJJAG00000007798) #33	Gsk3b (ENSJJAG00000010506) #34	Nr1i2 (ENSJJAG00000011379) #35	Cfap91 (ENSJJAG00000012537) #36	Cox17 (ENSJJAG00000012774) #37	Popdc2 (ENSJJAG00000013185)
Kangaroo rat	MODERN SPECIES	364	Hspbap1 (ENSDORG00000001682)	Parp14 (ENSDORG00000000690)	Dtx3l (ENSDORG00000003173)	Parp9 (ENSDORG00000003171)	Kpna1 (ENSDORG00000003170) #7	Wdr5b (ENSDORG00000003169) #8	Fam162a (ENSDORG00000003168) #9	Ccdc58 (ENSDORG00000003167) #10	ENSDORG00000003164 #14	Casr (ENSDORG00000003162) #15	Ildr1 (ENSDORG00000027522) #17	Slc15a2 (ENSDORG00000001116) #18	Eaf2 (ENSDORG00000001115) #19	Iqcb1 (ENSDORG00000001113) #20	Golgb1 (ENSDORG00000002423) #21	Hcls1 (ENSDORG00000002422) #22	Fbxo40 (ENSDORG00000002421) #23	Polq (ENSDORG00000002416) #24	Stxbp5l (ENSDORG00000007287) #25	Gtf2e1 (ENSDORG00000007285) #26	ENSDORG00000007284	Hgd (ENSDORG00000014504) #28	Ndufb4 (ENSDORG00000014502) #29	Fstl1 (ENSDORG00000002235) #30	Btnl12 (ENSDORG00000029670) #31	Lrrc58 (ENSDORG00000008401) #32	Gpr156 (ENSDORG00000006062) #33	Gsk3b (ENSDORG00000023434) #34	Nr1i2 (ENSDORG00000003966) #35	Cfap91 (ENSDORG00000011559) #36	Popdc2 (ENSDORG00000009735)
Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d	ENSGT00940000158837	ENSGT01050000244950.a.a.a #7	ENSGT00940000154143.f #8	ENSGT00640000091497.a #9	ENSGT00390000011053 #10	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #25	ENSGT00390000016696 #26	ENSGT00390000007467 #27	ENSGT00390000004601 #28	ENSGT00390000007133 #29	ENSGT00940000157784 #30	ENSGT00940000163036 #31	ENSGT00940000156556 #32	ENSGT00940000159755 #33	ENSGT00520000055635.c.a #34	ENSGT00940000161118 #35	ENSGT00390000003024 #36	ENSGT00390000002329 #37
Hystricomorpha	ANCESTRAL SPECIES	18	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d	ENSGT00940000158837	ENSGT01050000244950.a.a.a #7	ENSGT00940000154143.f #8	ENSGT00640000091497.a #9	ENSGT00390000011053 #10	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #25	ENSGT00390000016696 #26	ENSGT00390000007467 #27	ENSGT00390000004601 #28	ENSGT00390000007133 #29	ENSGT00940000157784 #30	ENSGT00940000163036 #31	ENSGT00940000156556 #32	ENSGT00940000159755 #33	ENSGT00520000055635.c.a #34	ENSGT00940000161118 #35	ENSGT00390000003024 #36	ENSGT00390000002329 #37
Hystricomorpha_a	ANCESTRAL SPECIES	36	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d	ENSGT00940000158837	ENSGT01050000244950.a.a.a #7	ENSGT00940000154143.f #8	ENSGT00640000091497.a #9	ENSGT00390000011053.l.b #10	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #25	ENSGT00390000016696 #26	ENSGT00390000007467 #27	ENSGT00390000004601 #28	ENSGT00390000007133 #29	ENSGT00940000157784 #30	ENSGT00940000163036 #31	ENSGT00940000156556 #32	ENSGT00940000159755 #33	ENSGT00520000055635.c.a #34	ENSGT00940000161118 #35	ENSGT00390000003024 #36	ENSGT00390000002329 #37
Guinea pig	MODERN SPECIES	35							ENSCPOG00000026689	ENSCPOG00000033142 #14	CASR (ENSCPOG00000013000) #15	CD86 (ENSCPOG00000020973) #16	ILDR1 (ENSCPOG00000013173) #17	SLC15A2 (ENSCPOG00000006934) #18	EAF2 (ENSCPOG00000006427) #19	IQCB1 (ENSCPOG00000006419) #20	GOLGB1 (ENSCPOG00000006405) #21	HCLS1 (ENSCPOG00000006399) #22	FBXO40 (ENSCPOG00000013228) #23	ENSCPOG00000026454	STXBP5L (ENSCPOG00000008283) #25	GTF2E1 (ENSCPOG00000009651) #26	ENSCPOG00000022678	RABL3 (ENSCPOG00000009645) #27	HGD (ENSCPOG00000022275) #28	NDUFB4 (ENSCPOG00000035194) #29	FSTL1 (ENSCPOG00000033880) #30	ENSCPOG00000040381 #31	LRRC58 (ENSCPOG00000007047) #32	GPR156 (ENSCPOG00000020772) #33	GSK3B (ENSCPOG00000014311) #34	NR1I2 (ENSCPOG00000020161) #35	CFAP91 (ENSCPOG00000015496) #36
Hystricomorpha_b	ANCESTRAL SPECIES	32	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d	ENSGT00940000158837	ENSGT01050000244950.a.a.a #7	ENSGT00940000154143.f #8	ENSGT00640000091497.a #9	ENSGT00390000011053.l.b #10	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #25	ENSGT00390000016696 #26	ENSGT00390000007467 #27	ENSGT00390000004601 #28	ENSGT00390000007133 #29	ENSGT00940000157784 #30	ENSGT00940000163036 #31	ENSGT00940000156556 #32	ENSGT00940000159755 #33	ENSGT00520000055635.c.a #34	ENSGT00940000161118 #35	ENSGT00390000003024 #36	ENSGT00390000002329 #37
Long-tailed chinchilla	MODERN SPECIES	134	KPNA1 (ENSCLAG00000010516) #7	WDR5B (ENSCLAG00000017883) #8	FAM162A (ENSCLAG00000013224) #9	MIX23 (ENSCLAG00000011614) #10	CSTA (ENSCLAG00000012262) #14	ENSCLAG00000010972	CASR (ENSCLAG00000014611) #15	CD86 (ENSCLAG00000011396) #16	ILDR1 (ENSCLAG00000010123) #17	SLC15A2 (ENSCLAG00000014172) #18	ENSCLAG00000016737	ENSCLAG00000014988	EAF2 (ENSCLAG00000014487) #19	IQCB1 (ENSCLAG00000014748) #20	GOLGB1 (ENSCLAG00000011762) #21	HCLS1 (ENSCLAG00000013865) #22	FBXO40 (ENSCLAG00000012408) #23	POLQ (ENSCLAG00000008388) #24	STXBP5L (ENSCLAG00000008959) #25	GTF2E1 (ENSCLAG00000013201) #26	RABL3 (ENSCLAG00000010855) #27	HGD (ENSCLAG00000009244) #28	NDUFB4 (ENSCLAG00000015299) #29	FSTL1 (ENSCLAG00000009617) #30	ENSCLAG00000013373 #31	LRRC58 (ENSCLAG00000013874) #32	GPR156 (ENSCLAG00000011487) #33	GSK3B (ENSCLAG00000010847) #34	NR1I2 (ENSCLAG00000012141) #35	CFAP91 (ENSCLAG00000012737) #36	COX17 (ENSCLAG00000009645) #37
Degu	MODERN SPECIES	188	DTX3L (ENSODEG00000008507)	PARP9 (ENSODEG00000010249)	KPNA1 (ENSODEG00000008059) #7	ENSODEG00000019490	WDR5B (ENSODEG00000019471) #8	FAM162A (ENSODEG00000008867) #9	ENSODEG00000008197 #10	CSTA (ENSODEG00000007909) #14	CASR (ENSODEG00000009812) #15	ENSODEG00000019503	ILDR1 (ENSODEG00000007516) #17	SLC15A2 (ENSODEG00000010727) #18	EAF2 (ENSODEG00000007603) #19	IQCB1 (ENSODEG00000007907) #20	GOLGB1 (ENSODEG00000007972) #21	HCLS1 (ENSODEG00000009049) #22	ENSODEG00000008646	FBXO40 (ENSODEG00000008932) #23	POLQ (ENSODEG00000007851) #24	STXBP5L (ENSODEG00000007458) #25
Naked mole-rat female	MODERN SPECIES	11	ENSHGLG00000001892	DTX3L (ENSHGLG00000001868)	ENSHGLG00000001733 #7	WDR5B (ENSHGLG00000047370) #8	FAM162A (ENSHGLG00000048091) #9	CCDC58 (ENSHGLG00000040686) #10	ENSHGLG00000045666	CSTA (ENSHGLG00000050326) #14	CASR (ENSHGLG00000001536) #15	CD86 (ENSHGLG00000001437) #16	ILDR1 (ENSHGLG00000001288) #17	SLC15A2 (ENSHGLG00000001129) #18	EAF2 (ENSHGLG00000019361) #19	IQCB1 (ENSHGLG00000019300) #20	GOLGB1 (ENSHGLG00000014378) #21	HCLS1 (ENSHGLG00000019092) #22	FBXO40 (ENSHGLG00000010736) #23	ENSHGLG00000012935 #24	ENSHGLG00000043147	STXBP5L (ENSHGLG00000016821) #25	ENSHGLG00000011218	ENSHGLG00000048017	ENSHGLG00000049436	GTF2E1 (ENSHGLG00000014027) #26	RABL3 (ENSHGLG00000014491) #27	HGD (ENSHGLG00000011483) #28	ENSHGLG00000021124	ENSHGLG00000039134	ENSHGLG00000046072 #29	FSTL1 (ENSHGLG00000042537) #30	ENSHGLG00000016072 #31
Sciuridae	ANCESTRAL SPECIES	12	ENSGT00940000154578.A.d	ENSGT00940000158837	ENSGT01050000244950.a.a.a #7	ENSGT00940000154143.f #8	ENSGT00640000091497.a #9	ENSGT00390000011053 #10	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00940000164942	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #25	ENSGT00390000016696 #26	ENSGT00390000007467 #27	ENSGT00390000004601 #28	ENSGT00390000007133 #29	ENSGT00940000157784 #30	ENSGT00940000156556 #32	ENSGT00940000159755 #33	ENSGT00520000055635.c.a #34	ENSGT00940000161118 #35	ENSGT00390000003024 #36	ENSGT00390000002329 #37	ENSGT00390000002563.b.a.b
Marmotini	ANCESTRAL SPECIES	13	ENSGT00940000154578.A.d	ENSGT00940000158837	ENSGT01050000244950.a.a.a #7	ENSGT00940000154143.f #8	ENSGT00640000091497.a #9	ENSGT00390000011053 #10	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00940000164942	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #25	ENSGT00390000016696 #26	ENSGT00390000007467 #27	ENSGT00390000004601 #28	ENSGT00390000007133 #29	ENSGT00940000157784 #30	ENSGT00940000156556 #32	ENSGT00940000159755 #33	ENSGT00520000055635.c.a #34	ENSGT00940000161118 #35	ENSGT00390000003024 #36	ENSGT00390000002329 #37	ENSGT00390000002563.b.a.b
Marmotini_b	ANCESTRAL SPECIES	36	ENSGT00940000154578.A.d	ENSGT00940000158837	ENSGT01050000244950.a.a.a #7	ENSGT00940000154143.f #8	ENSGT00640000091497.a #9	ENSGT00390000011053 #10	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00940000164942	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #25	ENSGT00390000016696.`b #26	ENSGT00390000007467 #27	ENSGT00390000004601 #28	ENSGT00390000007133 #29	ENSGT00940000157784 #30	ENSGT00940000156556 #32	ENSGT00940000159755 #33	ENSGT00520000055635.c.a #34	ENSGT00940000161118 #35	ENSGT00390000003024 #36	ENSGT00390000002329 #37	ENSGT00390000002563.b.a.b
Arctic ground squirrel	MODERN SPECIES	5	ENSUPAG00010020572	ENSUPAG00010020569	ENSUPAG00010020563 #7	WDR5B (ENSUPAG00010020556) #8	FAM162A (ENSUPAG00010020548) #9	MIX23 (ENSUPAG00010020528) #10	CSTA (ENSUPAG00010020512) #14	CASR (ENSUPAG00010020494) #15	ENSUPAG00010020488 #16	ILDR1 (ENSUPAG00010020459) #17	SLC15A2 (ENSUPAG00010020373) #18	ENSUPAG00010020361	EAF2 (ENSUPAG00010020354) #19	IQCB1 (ENSUPAG00010020333) #20	GOLGB1 (ENSUPAG00010020323) #21	HCLS1 (ENSUPAG00010020307) #22	FBXO40 (ENSUPAG00010020299) #23	POLQ (ENSUPAG00010020281) #24	STXBP5L (ENSUPAG00010020087) #25	ENSUPAG00010020082 #26	RABL3 (ENSUPAG00010020073) #27	HGD (ENSUPAG00010020051) #28	NDUFB4 (ENSUPAG00010020045) #29	FSTL1 (ENSUPAG00010020040) #30	LRRC58 (ENSUPAG00010020027) #32	GPR156 (ENSUPAG00010020021) #33	GSK3B (ENSUPAG00010020003) #34	NR1I2 (ENSUPAG00010019993) #35	CFAP91 (ENSUPAG00010019983) #36	POPDC2 (ENSUPAG00010019975)	PLA1A (ENSUPAG00010019964)
Squirrel	MODERN SPECIES	136	PARP14 (ENSSTOG00000019423)	DTX3L (ENSSTOG00000013445)	PARP9 (ENSSTOG00000013438)	KPNA1 (ENSSTOG00000026751) #7	WDR5B (ENSSTOG00000027025) #8	FAM162A (ENSSTOG00000004432) #9	MIX23 (ENSSTOG00000004419) #10	CSTA (ENSSTOG00000028515) #14	CASR (ENSSTOG00000004400) #15	ENSSTOG00000002652 #16	ILDR1 (ENSSTOG00000010082) #17	SLC15A2 (ENSSTOG00000010060) #18	EAF2 (ENSSTOG00000019911) #19	IQCB1 (ENSSTOG00000010040) #20	GOLGB1 (ENSSTOG00000010027) #21	HCLS1 (ENSSTOG00000010016) #22	FBXO40 (ENSSTOG00000021524) #23	POLQ (ENSSTOG00000009954) #24	STXBP5L (ENSSTOG00000009925) #25	GTF2E1 (ENSSTOG00000015735) #26	RABL3 (ENSSTOG00000019452) #27	HGD (ENSSTOG00000015729) #28	ENSSTOG00000020092 #29	FSTL1 (ENSSTOG00000001471) #30	LRRC58 (ENSSTOG00000022670) #32	GPR156 (ENSSTOG00000026101) #33	GSK3B (ENSSTOG00000014997) #34	NR1I2 (ENSSTOG00000014988) #35	CFAP91 (ENSSTOG00000014975) #36	COX17 (ENSSTOG00000032615) #37	POPDC2 (ENSSTOG00000023809)
Alpin marmot	MODERN SPECIES	19	DTX3L (ENSMMMG00000013433)	PARP9 (ENSMMMG00000013448)	KPNA1 (ENSMMMG00000013462) #7	WDR5B (ENSMMMG00000013487) #8	ENSMMMG00000013490 #9	MIX23 (ENSMMMG00000013503) #10	CSTA (ENSMMMG00000013578) #14	CASR (ENSMMMG00000013617) #15	CD86 (ENSMMMG00000013662) #16	ILDR1 (ENSMMMG00000013668) #17	SLC15A2 (ENSMMMG00000013727) #18	ENSMMMG00000013888	ENSMMMG00000013892	IQCB1 (ENSMMMG00000013895) #20	GOLGB1 (ENSMMMG00000013920) #21	HCLS1 (ENSMMMG00000013942) #22	FBXO40 (ENSMMMG00000013972) #23	POLQ (ENSMMMG00000013983) #24	STXBP5L (ENSMMMG00000014091) #25	GTF2E1 (ENSMMMG00000014676) #26	RABL3 (ENSMMMG00000014685) #27	HGD (ENSMMMG00000014696) #28	NDUFB4 (ENSMMMG00000014710) #29	FSTL1 (ENSMMMG00000014715) #30	ENSMMMG00000014738 #32	WWTR1 (ENSMMMG00000014742)	ENSMMMG00000014753	COMMD2 (ENSMMMG00000014762)	ANKUB1 (ENSMMMG00000014769)	ENSMMMG00000014779	ENSMMMG00000014788
Eurasian red squirrel	MODERN SPECIES	1	PARP9 (ENSSVLG00005006786)	KPNA1 (ENSSVLG00005006713) #7	WDR5B (ENSSVLG00005006686) #8	ENSSVLG00005006652	FAM162A (ENSSVLG00005006569) #9	MIX23 (ENSSVLG00005006490) #10	CSTA (ENSSVLG00005006443) #14	CASR (ENSSVLG00005006344) #15	CD86 (ENSSVLG00005006311) #16	ILDR1 (ENSSVLG00005006124) #17	SLC15A2 (ENSSVLG00005005862) #18	ENSSVLG00005005791	EAF2 (ENSSVLG00005005767) #19	IQCB1 (ENSSVLG00005005618) #20	GOLGB1 (ENSSVLG00005005470) #21	HCLS1 (ENSSVLG00005005312) #22	FBXO40 (ENSSVLG00005005263) #23	ENSSVLG00005005253	ENSSVLG00005005232	POLQ (ENSSVLG00005005121) #24	STXBP5L (ENSSVLG00005004686) #25	ENSSVLG00005004540 #26	RABL3 (ENSSVLG00005014450) #27	HGD (ENSSVLG00005014290) #28	NDUFB4 (ENSSVLG00005014222) #29	FSTL1 (ENSSVLG00005013992) #30	LRRC58 (ENSSVLG00005013737) #32	GPR156 (ENSSVLG00005013678) #33	ENSSVLG00005013550	GSK3B (ENSSVLG00005013429) #34	NR1I2 (ENSSVLG00005013118) #35
Lagomorpha	ANCESTRAL SPECIES	9	ENSGT00940000154311.a.b	ENSGT00940000154578.A.d	ENSGT00940000158837	ENSGT01050000244950.a.a.a #7	ENSGT00940000154143.f #8	ENSGT00640000091497.a #9	ENSGT00390000011053 #10	ENSGT00940000155717 #14	ENSGT00940000157596 #15	ENSGT00940000161500 #16	ENSGT00950000183058.A.b #17	ENSGT00940000156507 #18	ENSGT00390000017724.a.b #19	ENSGT00390000002188 #20	ENSGT00730000111007.a.a #21	ENSGT00940000158997 #22	ENSGT00950000183204.a #23	ENSGT00940000158694 #24	ENSGT00950000182906.b.b #25	ENSGT00390000016696 #26	ENSGT00390000007467 #27	ENSGT00390000004601 #28	ENSGT00390000007133 #29	ENSGT00940000157784 #30	ENSGT00940000163036 #31	ENSGT00940000156556 #32	ENSGT00940000159755 #33	ENSGT00520000055635.c.a #34	ENSGT00940000161118 #35	ENSGT00390000003024 #36	ENSGT00390000002329 #37
Rabbit	MODERN SPECIES	5	KPNA1 (ENSOCUG00000002694) #7	WDR5B (ENSOCUG00000030198) #8	FAM162A (ENSOCUG00000002686) #9	ENSOCUG00000021647	MIX23 (ENSOCUG00000002682) #10	ENSOCUG00000027176	CSTA (ENSOCUG00000029025) #14	CASR (ENSOCUG00000005085) #15	CD86 (ENSOCUG00000011550) #16	ILDR1 (ENSOCUG00000011541) #17	SLC15A2 (ENSOCUG00000001853) #18	EAF2 (ENSOCUG00000007081) #19	ENSOCUG00000005913	IQCB1 (ENSOCUG00000009145) #20	GOLGB1 (ENSOCUG00000012457) #21	HCLS1 (ENSOCUG00000012449) #22	FBXO40 (ENSOCUG00000012444) #23	POLQ (ENSOCUG00000008077) #24	STXBP5L (ENSOCUG00000005835) #25	GTF2E1 (ENSOCUG00000002784) #26	HGD (ENSOCUG00000009008) #28	ENSOCUG00000029140 #29	ENSOCUG00000012731	FSTL1 (ENSOCUG00000005247) #30	ENSOCUG00000029307 #31	LRRC58 (ENSOCUG00000025190) #32	ENSOCUG00000026225	GPR156 (ENSOCUG00000006705) #33	GSK3B (ENSOCUG00000014932) #34	NR1I2 (ENSOCUG00000006125) #35	CFAP91 (ENSOCUG00000009467) #36
Pika	MODERN SPECIES	4230													EAF2 (ENSOPRG00000006122) #19	IQCB1 (ENSOPRG00000006109) #20	GOLGB1 (ENSOPRG00000006091) #21	HCLS1 (ENSOPRG00000006078) #22	POLQ (ENSOPRG00000006048) #24	ENSOPRG00000006016 #25