Sarcopterygii	ANCESTRAL SPECIES	262															ENSGT00390000018360 #20	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348	ENSGT00940000166610	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00940000159989	ENSGT00950000182891.a.a.b.a.b.a	ENSGT00390000009491.c	ENSGT00940000154489.B	ENSGT00950000183065.B	ENSGT00510000047366	ENSGT00390000003453.b.b	ENSGT00390000018324
Tetrapoda	ANCESTRAL SPECIES	106												ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00940000164936	ENSGT00390000018360 #20	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00390000016607.b
Amniota	ANCESTRAL SPECIES	28	ENSGT00950000183112.b.b	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00940000171776	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000154969.a	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Mammalia	ANCESTRAL SPECIES	25	ENSGT00940000158522	ENSGT00950000183112.b.b	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00940000164936	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37	ENSGT00390000016607.b
Theria	ANCESTRAL SPECIES	3	ENSGT00940000158522	ENSGT00950000183112.b.b	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37	ENSGT00390000016607.b
Eutheria	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37	ENSGT00390000016607.b
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Primates	ANCESTRAL SPECIES	7	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Haplorrhini	ANCESTRAL SPECIES	7	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Simiiformes	ANCESTRAL SPECIES	8	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00910000147146	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413.k.a #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b.a.a #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00910000147146	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413.k.a #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00390000009405.a.b	ENSGT00940000164740 #34	ENSGT00940000157471 #35
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b.a.a #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00910000147146	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413.k.a #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a.g #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00390000009405.a.b	ENSGT00940000164740 #34	ENSGT00940000157471 #35
Hominidae	ANCESTRAL SPECIES	6	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b.a.a #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00910000147146	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413.k.a #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a.g #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00390000009405.a.b	ENSGT00940000164740 #34	ENSGT00940000157471 #35
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b.a.a #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00910000147146	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413.k.a #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a.g #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00390000009405.a.b.a	ENSGT00940000164740 #34	ENSGT00940000157471 #35
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b.a.a #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00910000147146	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413.k.a #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a.g #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00390000009405.a.b.a	ENSGT00940000164740 #34	ENSGT00940000157471 #35
Human	MODERN SPECIES		H2AC20 (ENSG00000184260) #7	H2AC21 (ENSG00000184270) #8	BOLA1 (ENSG00000178096) #9	SV2A (ENSG00000159164) #10	SF3B4 (ENSG00000143368) #11	MTMR11 (ENSG00000014914) #12	OTUD7B (ENSG00000264522) #13	VPS45 (ENSG00000136631) #14	PLEKHO1 (ENSG00000023902) #15	ANP32E (ENSG00000143401) #16	CA14 (ENSG00000118298) #17	APH1A (ENSG00000117362) #18	C1orf54 (ENSG00000118292) #19	CIART (ENSG00000159208) #20	MRPS21 (ENSG00000266472) #21	PRPF3 (ENSG00000117360) #22	RPRD2 (ENSG00000163125) #23	TARS2 (ENSG00000143374) #24	ECM1 (ENSG00000143369) #25	ADAMTSL4 (ENSG00000143382) #26	MCL1 (ENSG00000143384) #27	ENSA (ENSG00000143420) #28	GOLPH3L (ENSG00000143457) #29	HORMAD1 (ENSG00000143452) #30	CTSS (ENSG00000163131) #31	CTSK (ENSG00000143387) #32	ARNT (ENSG00000143437) #33	CTXND2 (ENSG00000283324) #34	SETDB1 (ENSG00000143379) #35	CERS2 (ENSG00000143418) #36	ANXA9 (ENSG00000143412) #37
Pan	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b.a.a #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00910000147146	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413.k.a #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a.g #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00390000009405.a.b.a	ENSGT00940000164740 #34	ENSGT00940000157471 #35
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	21	NCOA2 (ENSPTRG00000020333)	ENSPTRG00000040239	PRDM14 (ENSPTRG00000020331)	ENSPTRG00000050493	ENSPTRG00000046835	SLCO5A1 (ENSPTRG00000020330)	SULF1 (ENSPTRG00000020328)	ENSPTRG00000052468	C8H8orf34 (ENSPTRG00000020325)	PREX2 (ENSPTRG00000020324)	CPA6 (ENSPTRG00000020322)	ARFGEF1 (ENSPTRG00000020320)	CSPP1 (ENSPTRG00000020319)	COPS5 (ENSPTRG00000020317)	ENSPTRG00000045983	ENSPTRG00000047819 #22	PPP1R42 (ENSPTRG00000020316)	TCF24 (ENSPTRG00000043956)	MCMDC2 (ENSPTRG00000020313)	SGK3 (ENSPTRG00000020312)	ENSPTRG00000052460	C8H8orf44 (ENSPTRG00000020310)	VCPIP1 (ENSPTRG00000020309)	MYBL1 (ENSPTRG00000020308)	VXN (ENSPTRG00000045591)	ADHFE1 (ENSPTRG00000045798)	RRS1 (ENSPTRG00000030988)	CRH (ENSPTRG00000020304)	TRIM55 (ENSPTRG00000020302)	DNAJC5B (ENSPTRG00000020301)	PDE7A (ENSPTRG00000030991)
Chimpanzee	MODERN SPECIES		H2AC20 (ENSPTRG00000052021) #7	H2AC21 (ENSPTRG00000047219) #8	BOLA1 (ENSPTRG00000001241) #9	SV2A (ENSPTRG00000001242) #10	SF3B4 (ENSPTRG00000001243) #11	MTMR11 (ENSPTRG00000001244) #12	OTUD7B (ENSPTRG00000001245) #13	VPS45 (ENSPTRG00000001246) #14	PLEKHO1 (ENSPTRG00000001247) #15	ANP32E (ENSPTRG00000046939) #16	CA14 (ENSPTRG00000001249) #17	APH1A (ENSPTRG00000001250) #18	C1H1orf54 (ENSPTRG00000001251) #19	CIART (ENSPTRG00000001252) #20	MRPS21 (ENSPTRG00000034372) #21	PRPF3 (ENSPTRG00000001254) #22	RPRD2 (ENSPTRG00000001255) #23	TARS2 (ENSPTRG00000001256) #24	ECM1 (ENSPTRG00000001257) #25	ADAMTSL4 (ENSPTRG00000001258) #26	ENSPTRG00000040851	MCL1 (ENSPTRG00000001260) #27	ENSA (ENSPTRG00000001261) #28	GOLPH3L (ENSPTRG00000001262) #29	HORMAD1 (ENSPTRG00000001263) #30	CTSS (ENSPTRG00000001264) #31	CTSK (ENSPTRG00000001265) #32	ARNT (ENSPTRG00000001266) #33	ENSPTRG00000044588	CTXND2 (ENSPTRG00000043902) #34	SETDB1 (ENSPTRG00000001267) #35
Bonobo	DUPLICATION
Bonobo	MODERN SPECIES	21	ENSPPAG00000030392	PRDM14 (ENSPPAG00000027098)	ENSPPAG00000032396	ENSPPAG00000029133	SLCO5A1 (ENSPPAG00000011123)	ENSPPAG00000041983	SULF1 (ENSPPAG00000041354)	ENSPPAG00000031242	C8orf34 (ENSPPAG00000035210)	PREX2 (ENSPPAG00000033752)	CPA6 (ENSPPAG00000040368)	ARFGEF1 (ENSPPAG00000041346)	CSPP1 (ENSPPAG00000034833)	COPS5 (ENSPPAG00000031468)	ENSPPAG00000033505	ENSPPAG00000043769 #22	ENSPPAG00000036430	ENSPPAG00000034583	ENSPPAG00000033423	SGK3 (ENSPPAG00000037172)	ENSPPAG00000039360	ENSPPAG00000041765	VCPIP1 (ENSPPAG00000028693)	MYBL1 (ENSPPAG00000031091)	VXN (ENSPPAG00000042638)	ADHFE1 (ENSPPAG00000043914)	RRS1 (ENSPPAG00000024378)	CRH (ENSPPAG00000020093)	TRIM55 (ENSPPAG00000028998)	DNAJC5B (ENSPPAG00000042664)	PDE7A (ENSPPAG00000037038)
Bonobo	MODERN SPECIES		H2AC20 (ENSPPAG00000022736) #7	H2AC21 (ENSPPAG00000019861) #8	BOLA1 (ENSPPAG00000025235) #9	SV2A (ENSPPAG00000028470) #10	SF3B4 (ENSPPAG00000040904) #11	MTMR11 (ENSPPAG00000030287) #12	OTUD7B (ENSPPAG00000027439) #13	VPS45 (ENSPPAG00000039563) #14	PLEKHO1 (ENSPPAG00000035597) #15	ANP32E (ENSPPAG00000032079) #16	CA14 (ENSPPAG00000027877) #17	APH1A (ENSPPAG00000033416) #18	C1orf54 (ENSPPAG00000041323) #19	CIART (ENSPPAG00000043860) #20	MRPS21 (ENSPPAG00000041557) #21	PRPF3 (ENSPPAG00000030983) #22	RPRD2 (ENSPPAG00000028604) #23	TARS2 (ENSPPAG00000042011) #24	ECM1 (ENSPPAG00000031650) #25	ADAMTSL4 (ENSPPAG00000042395) #26	ENSPPAG00000034501	MCL1 (ENSPPAG00000038714) #27	ENSPPAG00000001282 #28	GOLPH3L (ENSPPAG00000017189) #29	HORMAD1 (ENSPPAG00000006843) #30	CTSS (ENSPPAG00000030281) #31	CTSK (ENSPPAG00000041595) #32	ARNT (ENSPPAG00000040647) #33	ENSPPAG00000026470	CTXND2 (ENSPPAG00000024020) #34	SETDB1 (ENSPPAG00000041015) #35
Gorilla	MODERN SPECIES		HIST2H2AC (ENSGGOG00000040152) #7	H2AC21 (ENSGGOG00000040311) #8	BOLA1 (ENSGGOG00000002957) #9	SV2A (ENSGGOG00000002959) #10	SF3B4 (ENSGGOG00000004761) #11	MTMR11 (ENSGGOG00000004764) #12	OTUD7B (ENSGGOG00000024965) #13	VPS45 (ENSGGOG00000026516) #14	PLEKHO1 (ENSGGOG00000002021) #15	ENSGGOG00000011889 #16	CA14 (ENSGGOG00000017116) #17	APH1A (ENSGGOG00000017118) #18	C1orf54 (ENSGGOG00000016964) #19	CIART (ENSGGOG00000016967) #20	MRPS21 (ENSGGOG00000027532) #21	PRPF3 (ENSGGOG00000013174) #22	RPRD2 (ENSGGOG00000004818) #23	TARS2 (ENSGGOG00000006311) #24	ENSGGOG00000006323 #25	ENSGGOG00000041363 #25	ENSGGOG00000042298	ADAMTSL4 (ENSGGOG00000016142) #26	MCL1 (ENSGGOG00000016154) #27	ENSGGOG00000023948 #28	GOLPH3L (ENSGGOG00000000869) #29	HORMAD1 (ENSGGOG00000004337) #30	ENSGGOG00000004909 #31	CTSK (ENSGGOG00000015378) #32	ARNT (ENSGGOG00000015383) #33	ENSGGOG00000023315	CTXND2 (ENSGGOG00000038429) #34
Orangutan	MODERN SPECIES		ENSPPYG00000030729	H2AC21 (ENSPPYG00000035072) #8	BOLA1 (ENSPPYG00000040309) #9	SV2A (ENSPPYG00000000913) #10	SF3B4 (ENSPPYG00000000912) #11	MTMR11 (ENSPPYG00000000911) #12	OTUD7B (ENSPPYG00000000910) #13	VPS45 (ENSPPYG00000000909) #14	PLEKHO1 (ENSPPYG00000034117) #15	ANP32E (ENSPPYG00000000907) #16	CA14 (ENSPPYG00000000906) #17	APH1A (ENSPPYG00000000905) #18	C1orf54 (ENSPPYG00000000904) #19	CIART (ENSPPYG00000000903) #20	MRPS21 (ENSPPYG00000032712) #21	PRPF3 (ENSPPYG00000000900) #22	RPRD2 (ENSPPYG00000000899) #23	TARS2 (ENSPPYG00000000898) #24	ECM1 (ENSPPYG00000000897) #25	ADAMTSL4 (ENSPPYG00000000896) #26	MCL1 (ENSPPYG00000000894) #27	ENSPPYG00000000893 ##28	GOLPH3L (ENSPPYG00000000892) #29	HORMAD1 (ENSPPYG00000000891) #30	CTSS (ENSPPYG00000000890) #31	CTSK (ENSPPYG00000000889) #32	ARNT (ENSPPYG00000000888) #33	CTXND2 (ENSPPYG00000031784) #34	SETDB1 (ENSPPYG00000000887) #35	CERS2 (ENSPPYG00000000886) #36	ANXA9 (ENSPPYG00000000885) #37
Gibbon	MODERN SPECIES	2	ENSNLEG00000034350	H2BC21 (ENSNLEG00000034437)	H2AC20 (ENSNLEG00000031795) #7	SV2A (ENSNLEG00000009675) #10	ENSNLEG00000009693 #11	MTMR11 (ENSNLEG00000009701) #12	OTUD7B (ENSNLEG00000009731) #13	VPS45 (ENSNLEG00000009742) #14	ENSNLEG00000009769 #15	ANP32E (ENSNLEG00000032790) #16	CA14 (ENSNLEG00000009787) #17	C1orf54 (ENSNLEG00000009825) #19	APH1A (ENSNLEG00000009799) #18	CIART (ENSNLEG00000009830) #20	MRPS21 (ENSNLEG00000031023) #21	PRPF3 (ENSNLEG00000009841) #22	ENSNLEG00000029292 #23	TARS2 (ENSNLEG00000009858) #24	ECM1 (ENSNLEG00000009877) #25	ENSNLEG00000033454	ADAMTSL4 (ENSNLEG00000009896) #26	MCL1 (ENSNLEG00000009922) #27	ENSNLEG00000009928 #28	GOLPH3L (ENSNLEG00000028540) #29	HORMAD1 (ENSNLEG00000009941) #30	CTSS (ENSNLEG00000009960) #31	CTSK (ENSNLEG00000033510) #32	ARNT (ENSNLEG00000009971) #33	CTXND2 (ENSNLEG00000035943) #34	SETDB1 (ENSNLEG00000009996) #35	CERS2 (ENSNLEG00000010014) #36
Cercopithecidae	ANCESTRAL SPECIES	22	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b.b ##21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00910000147146	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413.l.a.a ##28	ENSGT00940000155413.k.a #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00390000009405.a.b	ENSGT00940000164740 #34
Rhinopithecus	ANCESTRAL SPECIES	23	ENSGT01100000263575.B.u	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b.b ##21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00910000147146	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413.l.a.a ##28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00390000009405.a.b	ENSGT00940000164740 #34	ENSGT00940000157471 #35
Golden snub-nosed monkey	MODERN SPECIES	2622	ENSRROG00000000406	H2AC20 (ENSRROG00000024717) #7	H2AC21 (ENSRROG00000026620) #8	SV2A (ENSRROG00000030492) #10	SF3B4 (ENSRROG00000029366) #11	MTMR11 (ENSRROG00000031467) #12	OTUD7B (ENSRROG00000013470) #13	VPS45 (ENSRROG00000034970) #14	PLEKHO1 (ENSRROG00000029550) #15	ANP32E (ENSRROG00000030038) #16	ENSRROG00000009807 #17	APH1A (ENSRROG00000045010) #18	C1orf54 (ENSRROG00000032162) #19	CIART (ENSRROG00000031459) #20	MRPS21 (ENSRROG00000035197) ##21	PRPF3 (ENSRROG00000027464) #22	RPRD2 (ENSRROG00000044462) #23	TARS2 (ENSRROG00000030946) #24	ECM1 (ENSRROG00000030152) #25	ENSRROG00000044578	ADAMTSL4 (ENSRROG00000035617) #26	MCL1 (ENSRROG00000033266) #27	ENSRROG00000034733 ##28	GOLPH3L (ENSRROG00000042636) #29	HORMAD1 (ENSRROG00000007880) #30	CTSS (ENSRROG00000039722) #31	CTSK (ENSRROG00000036101) #32	ARNT (ENSRROG00000032414) #33	ENSRROG00000010877	ENSRROG00000015516	CTXND2 (ENSRROG00000017486) #34
Black snub-nosed monkey	MODERN SPECIES	590		H2BC21 (ENSRBIG00000006763)	H2AC20 (ENSRBIG00000024633) #7	H2AC21 (ENSRBIG00000020060) #8	SV2A (ENSRBIG00000034170) #10	SF3B4 (ENSRBIG00000043392) #11	MTMR11 (ENSRBIG00000044428) #12	OTUD7B (ENSRBIG00000030452) #13	VPS45 (ENSRBIG00000043305) #14	PLEKHO1 (ENSRBIG00000020541) #15	ANP32E (ENSRBIG00000032210) #16	CA14 (ENSRBIG00000029322) #17	APH1A (ENSRBIG00000035934) #18	C1orf54 (ENSRBIG00000027635) #19	CIART (ENSRBIG00000026376) #20	PRPF3 (ENSRBIG00000028854) #22	RPRD2 (ENSRBIG00000032833) #23	TARS2 (ENSRBIG00000044518) #24	ECM1 (ENSRBIG00000029889) #25	ADAMTSL4 (ENSRBIG00000044718) #26	MCL1 (ENSRBIG00000031092) #27	ENSRBIG00000027848 ##28	GOLPH3L (ENSRBIG00000033265) #29	HORMAD1 (ENSRBIG00000031865) #30	CTSS (ENSRBIG00000034911) #31	CTSK (ENSRBIG00000011955) #32	ARNT (ENSRBIG00000043770) #33	ENSRBIG00000015869	CTXND2 (ENSRBIG00000017453) #34	SETDB1 (ENSRBIG00000042359) #35	CERS2 (ENSRBIG00000029589) #36
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b.b ##21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413.l.b ##28	ENSGT00940000155413.k.a #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b.b ##21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413.l.b ##28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00390000009405.a.b	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Macaca	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b.b ##21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413.l.b ##28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00390000009405.a.b	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Pig-tailed macaque	MODERN SPECIES	262	H2BC21 (ENSMNEG00000013123)	H2AC20 (ENSMNEG00000028094) #7	H2AC21 (ENSMNEG00000009606) #8	SV2A (ENSMNEG00000037160) #10	SF3B4 (ENSMNEG00000031839) #11	MTMR11 (ENSMNEG00000033672) #12	OTUD7B (ENSMNEG00000034782) #13	VPS45 (ENSMNEG00000035754) #14	PLEKHO1 (ENSMNEG00000033535) #15	ANP32E (ENSMNEG00000042651) #16	CA14 (ENSMNEG00000035520) #17	APH1A (ENSMNEG00000034177) #18	C1orf54 (ENSMNEG00000038419) #19	CIART (ENSMNEG00000040203) #20	ENSMNEG00000031239 ##21	PRPF3 (ENSMNEG00000038161) #22	RPRD2 (ENSMNEG00000028542) #23	TARS2 (ENSMNEG00000042066) #24	ECM1 (ENSMNEG00000015328) #25	ADAMTSL4 (ENSMNEG00000028307) #26	MCL1 (ENSMNEG00000045448) #27	ENSA (ENSMNEG00000031456) ##28	GOLPH3L (ENSMNEG00000008522) #29	HORMAD1 (ENSMNEG00000043307) #30	CTSS (ENSMNEG00000034738) #31	CTSK (ENSMNEG00000033034) #32	ARNT (ENSMNEG00000044100) #33	ENSMNEG00000005779	SETDB1 (ENSMNEG00000017223) #35	CERS2 (ENSMNEG00000042406) #36	ANXA9 (ENSMNEG00000000542) #37
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b.b ##21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413.l.b ##28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37	ENSGT00390000016607.b
Crab-eating macaque	MODERN SPECIES		H2AC20 (ENSMFAG00000005216) #7	H2AC21 (ENSMFAG00000054389) #8	BOLA1 (ENSMFAG00000048940) #9	SV2A (ENSMFAG00000034474) #10	SF3B4 (ENSMFAG00000042395) #11	MTMR11 (ENSMFAG00000031699) #12	OTUD7B (ENSMFAG00000001415) #13	VPS45 (ENSMFAG00000032727) #14	PLEKHO1 (ENSMFAG00000034638) #15	ANP32E (ENSMFAG00000000851) #16	CA14 (ENSMFAG00000040977) #17	APH1A (ENSMFAG00000034137) #18	C1orf54 (ENSMFAG00000002775) #19	CIART (ENSMFAG00000042429) #20	MRPS21 (ENSMFAG00000042375) ##21	PRPF3 (ENSMFAG00000039791) #22	RPRD2 (ENSMFAG00000002559) #23	TARS2 (ENSMFAG00000030387) #24	ECM1 (ENSMFAG00000040115) #25	ADAMTSL4 (ENSMFAG00000002869) #26	MCL1 (ENSMFAG00000042545) #27	ENSA (ENSMFAG00000001523) ##28	GOLPH3L (ENSMFAG00000042364) #29	HORMAD1 (ENSMFAG00000000795) #30	CTSS (ENSMFAG00000035464) #31	CTSK (ENSMFAG00000000402) #32	ARNT (ENSMFAG00000038379) #33	SETDB1 (ENSMFAG00000042328) #35	CERS2 (ENSMFAG00000038604) #36	ENSMFAG00000055601	PIP5K1A (ENSMFAG00000031399)
Rhesus	MODERN SPECIES		SV2A (ENSMMUG00000007257) #10	SF3B4 (ENSMMUG00000007256) #11	MTMR11 (ENSMMUG00000007246) #12	ENSMMUG00000052282	OTUD7B (ENSMMUG00000007244) #13	VPS45 (ENSMMUG00000013673) #14	PLEKHO1 (ENSMMUG00000013681) #15	ANP32E (ENSMMUG00000021531) #16	CA14 (ENSMMUG00000021385) #17	APH1A (ENSMMUG00000021386) #18	C1H1orf54 (ENSMMUG00000021387) #19	CIART (ENSMMUG00000021388) #20	ENSMMUG00000049420	MRPS21 (ENSMMUG00000021391) ##21	ENSMMUG00000060724	PRPF3 (ENSMMUG00000016301) #22	RPRD2 (ENSMMUG00000007303) #23	TARS2 (ENSMMUG00000006256) #24	ECM1 (ENSMMUG00000006257) #25	ADAMTSL4 (ENSMMUG00000008218) #26	MCL1 (ENSMMUG00000053525) #27	ENSA (ENSMMUG00000012814) ##28	GOLPH3L (ENSMMUG00000010668) #29	HORMAD1 (ENSMMUG00000010669) #30	CTSS (ENSMMUG00000010670) #31	ARNT (ENSMMUG00000000541) #33	SETDB1 (ENSMMUG00000023235) #35	CERS2 (ENSMMUG00000023234) #36	ANXA9 (ENSMMUG00000023231) #37	MINDY1 (ENSMMUG00000010067)	PRUNE1 (ENSMMUG00000010068)
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b.b ##21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413.k.a #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00390000009405.a.b	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Olive baboon	MODERN SPECIES		H2BC21 (ENSPANG00000043204)	H2AC21 (ENSPANG00000048915) #8	BOLA1 (ENSPANG00000005165) #9	SV2A (ENSPANG00000008740) #10	SF3B4 (ENSPANG00000005126) #11	MTMR11 (ENSPANG00000020583) #12	OTUD7B (ENSPANG00000009169) #13	VPS45 (ENSPANG00000012294) #14	PLEKHO1 (ENSPANG00000007434) #15	ANP32E (ENSPANG00000032905) #16	CA14 (ENSPANG00000012135) #17	APH1A (ENSPANG00000008739) #18	C1orf54 (ENSPANG00000033401) #19	CIART (ENSPANG00000034379) #20	MRPS21 (ENSPANG00000030104) ##21	PRPF3 (ENSPANG00000000499) #22	RPRD2 (ENSPANG00000019137) #23	TARS2 (ENSPANG00000016774) #24	ECM1 (ENSPANG00000006364) #25	ADAMTSL4 (ENSPANG00000011009) #26	MCL1 (ENSPANG00000016574) #27	ENSA (ENSPANG00000021851) #28	GOLPH3L (ENSPANG00000036054) #29	HORMAD1 (ENSPANG00000009155) #30	CTSS (ENSPANG00000021581) #31	CTSK (ENSPANG00000009168) #32	ARNT (ENSPANG00000016773) #33	SETDB1 (ENSPANG00000020214) #35	CERS2 (ENSPANG00000012293) #36	ANXA9 (ENSPANG00000012518) #37	MINDY1 (ENSPANG00000015350)
Cercopithecinae_d	ANCESTRAL SPECIES	29	ENSGT01100000263575.B.t.a.b	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413.k.a #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00390000009405.a.b	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Sooty mangabey	MODERN SPECIES	153		H2BC21 (ENSCATG00000020834)	H2AC20 (ENSCATG00000017082) #7	H2AC21 (ENSCATG00000018627) #8	SV2A (ENSCATG00000034955) #10	SF3B4 (ENSCATG00000033114) #11	MTMR11 (ENSCATG00000034367) #12	OTUD7B (ENSCATG00000039246) #13	VPS45 (ENSCATG00000033198) #14	PLEKHO1 (ENSCATG00000031337) #15	ANP32E (ENSCATG00000033019) #16	CA14 (ENSCATG00000044036) #17	APH1A (ENSCATG00000033983) #18	C1orf54 (ENSCATG00000033751) #19	CIART (ENSCATG00000032392) #20	PRPF3 (ENSCATG00000041778) #22	RPRD2 (ENSCATG00000033842) #23	TARS2 (ENSCATG00000034784) #24	ECM1 (ENSCATG00000033093) #25	ADAMTSL4 (ENSCATG00000043576) #26	MCL1 (ENSCATG00000032744) #27	ENSCATG00000032600 ##28	GOLPH3L (ENSCATG00000033915) #29	HORMAD1 (ENSCATG00000039929) #30	CTSS (ENSCATG00000036085) #31	CTSK (ENSCATG00000036086) #32	ARNT (ENSCATG00000041677) #33	SETDB1 (ENSCATG00000044888) #35	CERS2 (ENSCATG00000031279) #36	ANXA9 (ENSCATG00000034635) #37	MINDY1 (ENSCATG00000038845)
Drill	DUPLICATION
Drill	MODERN SPECIES	584	NCOA2 (ENSMLEG00000034329)	PRDM14 (ENSMLEG00000027772)	ENSMLEG00000023557	ENSMLEG00000041678	ENSMLEG00000030182	SLCO5A1 (ENSMLEG00000036819)	SULF1 (ENSMLEG00000036884)	C8orf34 (ENSMLEG00000033292)	PREX2 (ENSMLEG00000004343)	CPA6 (ENSMLEG00000039764)	ARFGEF1 (ENSMLEG00000043500)	ENSMLEG00000035224	CSPP1 (ENSMLEG00000007846)	ENSMLEG00000015396	ENSMLEG00000035973	ENSMLEG00000041065 #22	PPP1R42 (ENSMLEG00000040981)	TCF24 (ENSMLEG00000039858)	ENSMLEG00000000766	MCMDC2 (ENSMLEG00000038410)	SGK3 (ENSMLEG00000041322)	ENSMLEG00000042544	ENSMLEG00000037739	VCPIP1 (ENSMLEG00000035358)	MYBL1 (ENSMLEG00000032838)	VXN (ENSMLEG00000029077)	ADHFE1 (ENSMLEG00000037829)	RRS1 (ENSMLEG00000004794)	ENSMLEG00000007645	CRH (ENSMLEG00000021986)	TRIM55 (ENSMLEG00000037287)
Drill	MODERN SPECIES	411	H2BC21 (ENSMLEG00000028179)	H2AC20 (ENSMLEG00000032236) #7	H2AC21 (ENSMLEG00000025354) #8	BOLA1 (ENSMLEG00000000340) #9	SV2A (ENSMLEG00000027748) #10	SF3B4 (ENSMLEG00000038667) #11	MTMR11 (ENSMLEG00000037687) #12	OTUD7B (ENSMLEG00000043764) #13	VPS45 (ENSMLEG00000014395) #14	PLEKHO1 (ENSMLEG00000041687) #15	ANP32E (ENSMLEG00000025639) #16	CA14 (ENSMLEG00000037597) #17	APH1A (ENSMLEG00000037901) #18	C1orf54 (ENSMLEG00000007055) #19	CIART (ENSMLEG00000009773) #20	PRPF3 (ENSMLEG00000040609) #22	RPRD2 (ENSMLEG00000028436) #23	TARS2 (ENSMLEG00000030174) #24	ECM1 (ENSMLEG00000023846) #25	ADAMTSL4 (ENSMLEG00000041962) #26	MCL1 (ENSMLEG00000026079) #27	ENSA (ENSMLEG00000028446) #28	GOLPH3L (ENSMLEG00000042824) #29	HORMAD1 (ENSMLEG00000023333) #30	CTSS (ENSMLEG00000037846) #31	CTSK (ENSMLEG00000035690) #32	ARNT (ENSMLEG00000043783) #33	ENSMLEG00000027987	SETDB1 (ENSMLEG00000033050) #35	CERS2 (ENSMLEG00000037916) #36	ANXA9 (ENSMLEG00000038293) #37
Platyrrhini	ANCESTRAL SPECIES	12	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.o #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00910000147146	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b.e #27	ENSGT00940000155413.k.a #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36
Cebidae	ANCESTRAL SPECIES	12	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.o #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00910000147146	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b.e #27	ENSGT00940000155413.k.a #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36
Cebidae_a	ANCESTRAL SPECIES	6	ENSGT01100000263575.B.t.a.a.a	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.o #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00910000147146	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b.e #27	ENSGT00940000155413.k.a #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36
Bolivian squirrel monkey	MODERN SPECIES	194	ENSSBOG00000008360	H2AC20 (ENSSBOG00000019840) #7	H2AC21 (ENSSBOG00000017659) #8	SV2A (ENSSBOG00000030706) #10	ENSSBOG00000012310 #11	MTMR11 (ENSSBOG00000018459) #12	OTUD7B (ENSSBOG00000022601) #13	VPS45 (ENSSBOG00000029517) #14	PLEKHO1 (ENSSBOG00000031989) #15	ANP32E (ENSSBOG00000033935) #16	CA14 (ENSSBOG00000024949) #17	APH1A (ENSSBOG00000025150) #18	C1orf54 (ENSSBOG00000013160) #19	CIART (ENSSBOG00000024903) #20	MRPS21 (ENSSBOG00000000667) #21	PRPF3 (ENSSBOG00000033104) #22	RPRD2 (ENSSBOG00000020427) #23	TARS2 (ENSSBOG00000001108) #24	ECM1 (ENSSBOG00000031851) #25	ENSSBOG00000003745	ADAMTSL4 (ENSSBOG00000028243) #26	MCL1 (ENSSBOG00000035804) #27	ENSA (ENSSBOG00000030145) #28	GOLPH3L (ENSSBOG00000035901) #29	HORMAD1 (ENSSBOG00000034042) #30	CTSS (ENSSBOG00000027502) #31	CTSK (ENSSBOG00000028605) #32	ARNT (ENSSBOG00000025839) #33	CTXND2 (ENSSBOG00000016796) #34	SETDB1 (ENSSBOG00000028608) #35	CERS2 (ENSSBOG00000033621) #36
Capuchin	MODERN SPECIES	188	ENSCCAG00000034681	H2BC21 (ENSCCAG00000020545)	H2AC20 (ENSCCAG00000005773) #7	H2AC21 (ENSCCAG00000020094) #8	SV2A (ENSCCAG00000035849) #10	ENSCCAG00000021751 #11	MTMR11 (ENSCCAG00000035057) #12	OTUD7B (ENSCCAG00000036948) #13	VPS45 (ENSCCAG00000037065) #14	PLEKHO1 (ENSCCAG00000033185) #15	ENSCCAG00000020910	CA14 (ENSCCAG00000023681) #17	APH1A (ENSCCAG00000036376) #18	C1orf54 (ENSCCAG00000032327) #19	CIART (ENSCCAG00000027921) #20	PRPF3 (ENSCCAG00000026380) #22	RPRD2 (ENSCCAG00000032422) #23	TARS2 (ENSCCAG00000034305) #24	ECM1 (ENSCCAG00000026093) #25	ENSCCAG00000027383	ADAMTSL4 (ENSCCAG00000026279) #26	MCL1 (ENSCCAG00000029442) #27	ENSCCAG00000029199 #28	GOLPH3L (ENSCCAG00000000006) #29	HORMAD1 (ENSCCAG00000028128) #30	CTSS (ENSCCAG00000021854) #31	CTSK (ENSCCAG00000029150) #32	ARNT (ENSCCAG00000029182) #33	ENSCCAG00000025398	CTXND2 (ENSCCAG00000006838) #34	SETDB1 (ENSCCAG00000024882) #35
Marmoset	MODERN SPECIES	9	H2BC21 (ENSCJAG00000081464)	H2AC20 (ENSCJAG00000048427) #7	BOLA1 (ENSCJAG00000044018) #9	SV2A (ENSCJAG00000000779) #10	SF3B4 (ENSCJAG00000042351) #11	MTMR11 (ENSCJAG00000000802) #12	OTUD7B (ENSCJAG00000000821) #13	VPS45 (ENSCJAG00000000845) #14	PLEKHO1 (ENSCJAG00000000867) #15	ANP32E (ENSCJAG00000009710) #16	CA14 (ENSCJAG00000009756) #17	APH1A (ENSCJAG00000009786) #18	C1orf54 (ENSCJAG00000009890) #19	CIART (ENSCJAG00000009905) #20	MRPS21 (ENSCJAG00000041203) #21	PRPF3 (ENSCJAG00000009926) #22	RPRD2 (ENSCJAG00000006424) #23	MCL1 (ENSCJAG00000006605) #27	TARS2 (ENSCJAG00000006429) #24	ECM1 (ENSCJAG00000006499) #25	ADAMTSL4 (ENSCJAG00000006555) #26	ENSCJAG00000038289	ENSCJAG00000080548	ENSA (ENSCJAG00000046173) #28	GOLPH3L (ENSCJAG00000055606) #29	HORMAD1 (ENSCJAG00000006705) #30	CTSS (ENSCJAG00000006790) #31	CTSK (ENSCJAG00000006804) #32	ARNT (ENSCJAG00000006839) #33	SETDB1 (ENSCJAG00000006972) #35	CERS2 (ENSCJAG00000007043) #36
Mas night monkey	MODERN SPECIES	784	H2BC21 (ENSANAG00000020035)	H2AC20 (ENSANAG00000000357) #7	H2AC21 (ENSANAG00000018246) #8	SV2A (ENSANAG00000028972) #10	SF3B4 (ENSANAG00000031025) #11	MTMR11 (ENSANAG00000019298) #12	OTUD7B (ENSANAG00000021683) #13	VPS45 (ENSANAG00000034854) #14	PLEKHO1 (ENSANAG00000036370) #15	ENSANAG00000029309 #16	CA14 (ENSANAG00000026566) #17	APH1A (ENSANAG00000030676) #18	C1orf54 (ENSANAG00000023731) #19	CIART (ENSANAG00000030418) #20	ENSANAG00000026132 #21	PRPF3 (ENSANAG00000026138) #22	RPRD2 (ENSANAG00000019468) #23	TARS2 (ENSANAG00000019620) #24	ECM1 (ENSANAG00000031765) #25	ADAMTSL4 (ENSANAG00000019112) #26	ENSANAG00000021748 #27	ENSANAG00000003718	ENSANAG00000029931 ##28	GOLPH3L (ENSANAG00000020389) #29	HORMAD1 (ENSANAG00000021070) #30	CTSS (ENSANAG00000027610) #31	CTSK (ENSANAG00000037073) #32	ARNT (ENSANAG00000021110) #33	ENSANAG00000035985	CTXND2 (ENSANAG00000007098) #34	SETDB1 (ENSANAG00000001819) #35
Tarsier	MODERN SPECIES	5369								VPS45 (ENSTSYG00000008737) #14	PLEKHO1 (ENSTSYG00000005293) #15	ANP32E (ENSTSYG00000004463) #16	CA14 (ENSTSYG00000012164) #17	APH1A (ENSTSYG00000012166) #18	CUNH1orf54 (ENSTSYG00000008908) #19	CIART (ENSTSYG00000006895) #20	MRPS21 (ENSTSYG00000019342) #21	PRPF3 (ENSTSYG00000001383) #22	RPRD2 (ENSTSYG00000010106) #23	TARS2 (ENSTSYG00000003903) #24	ECM1 (ENSTSYG00000026093) #25
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Bushbaby	MODERN SPECIES	289	ENSOGAG00000027485	ENSOGAG00000006255	H2AC20 (ENSOGAG00000006256) #7	H2AC21 (ENSOGAG00000006258) #8	BOLA1 (ENSOGAG00000032964) #9	SV2A (ENSOGAG00000006260) #10	SF3B4 (ENSOGAG00000006265) #11	MTMR11 (ENSOGAG00000006266) #12	OTUD7B (ENSOGAG00000030526) #13	VPS45 (ENSOGAG00000006271) #14	PLEKHO1 (ENSOGAG00000006275) #15	ANP32E (ENSOGAG00000004841) #16	CA14 (ENSOGAG00000004842) #17	APH1A (ENSOGAG00000004843) #18	CIART (ENSOGAG00000004846) #20	PRPF3 (ENSOGAG00000005352) #22	ENSOGAG00000028162	RPRD2 (ENSOGAG00000029308) #23	TARS2 (ENSOGAG00000005360) #24	ECM1 (ENSOGAG00000005365) #25	ADAMTSL4 (ENSOGAG00000006696) #26	MCL1 (ENSOGAG00000016421) #27	ENSA (ENSOGAG00000005863) #28	GOLPH3L (ENSOGAG00000029017) #29	HORMAD1 (ENSOGAG00000005640) #30	CTSS (ENSOGAG00000014743) #31	CTSK (ENSOGAG00000004519) #32	ARNT (ENSOGAG00000004523) #33	ENSOGAG00000024502	SETDB1 (ENSOGAG00000010320) #35	CERS2 (ENSOGAG00000010325) #36
Lemuriformes	ANCESTRAL SPECIES	11		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b.c.a #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Mouse lemur	MODERN SPECIES	11	H2BC21 (ENSMICG00000044053)	SV2A (ENSMICG00000000293) #10	SF3B4 (ENSMICG00000044961) #11	MTMR11 (ENSMICG00000000298) #12	OTUD7B (ENSMICG00000047179) #13	ENSMICG00000035294	VPS45 (ENSMICG00000015188) #14	PLEKHO1 (ENSMICG00000027313) #15	ANP32E (ENSMICG00000015265) #16	ENSMICG00000034870	CA14 (ENSMICG00000045466) #17	APH1A (ENSMICG00000015279) #18	C1orf54 (ENSMICG00000015318) #19	CIART (ENSMICG00000015355) #20	ENSMICG00000046505 #21	PRPF3 (ENSMICG00000015386) #22	RPRD2 (ENSMICG00000007991) #23	TARS2 (ENSMICG00000008016) #24	ECM1 (ENSMICG00000044220) #25	ADAMTSL4 (ENSMICG00000008061) #26	MCL1 (ENSMICG00000034250) #27	ENSMICG00000029534	ENSA (ENSMICG00000004996) #28	GOLPH3L (ENSMICG00000027785) #29	HORMAD1 (ENSMICG00000036889) #30	ENSMICG00000027297	CTSS (ENSMICG00000032451) #31	CTSK (ENSMICG00000005853) #32	ARNT (ENSMICG00000005872) #33	ENSMICG00000034737	CTXND2 (ENSMICG00000044474) #34
Lemuriformes_a	ANCESTRAL SPECIES	19	ENSGT01100000263559.A.f.e	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b.c.a #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Coquerels sifaka	MODERN SPECIES	750	ENSPCOG00000012693	H2BC21 (ENSPCOG00000010375)	H2AC20 (ENSPCOG00000011857) #7	SV2A (ENSPCOG00000018151) #10	SF3B4 (ENSPCOG00000015399) #11	MTMR11 (ENSPCOG00000027870) #12	OTUD7B (ENSPCOG00000028177) #13	VPS45 (ENSPCOG00000011875) #14	PLEKHO1 (ENSPCOG00000027826) #15	ANP32E (ENSPCOG00000022218) #16	CA14 (ENSPCOG00000025811) #17	APH1A (ENSPCOG00000016266) #18	C1orf54 (ENSPCOG00000006128) #19	CIART (ENSPCOG00000018797) #20	ENSPCOG00000023504 #21	PRPF3 (ENSPCOG00000013828) #22	ENSPCOG00000022424	RPRD2 (ENSPCOG00000015902) #23	TARS2 (ENSPCOG00000017247) #24	ECM1 (ENSPCOG00000027232) #25	ADAMTSL4 (ENSPCOG00000010721) #26	ENSPCOG00000025226 #27	ENSA (ENSPCOG00000015526) #28	GOLPH3L (ENSPCOG00000019149) #29	HORMAD1 (ENSPCOG00000026567) #30	CTSS (ENSPCOG00000015772) #31	CTSK (ENSPCOG00000022303) #32	ARNT (ENSPCOG00000028373) #33	CTXND2 (ENSPCOG00000010066) #34	SETDB1 (ENSPCOG00000027869) #35	CERS2 (ENSPCOG00000020561) #36
Greater bamboo lemur	MODERN SPECIES	2653																PRPF3 (ENSPSMG00000004868) #22
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Tree shrew	MODERN SPECIES	724																PRPF3 (ENSTBEG00000014072) #22
Glires	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Rodentia	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Hystricomorpha	ANCESTRAL SPECIES	23	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Hystricomorpha_a	ANCESTRAL SPECIES	59	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00940000164936	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37	ENSGT00390000016607.b
Guinea pig	MODERN SPECIES	2	H2AC20 (ENSCPOG00000036942) #7	H2AC21 (ENSCPOG00000030869) #8	BOLA1 (ENSCPOG00000010247) #9	SV2A (ENSCPOG00000010250) #10	SF3B4 (ENSCPOG00000008267) #11	MTMR11 (ENSCPOG00000008271) #12	OTUD7B (ENSCPOG00000001517) #13	VPS45 (ENSCPOG00000002536) #14	PLEKHO1 (ENSCPOG00000021117) #15	ANP32E (ENSCPOG00000013941) #16	CA14 (ENSCPOG00000006079) #17	APH1A (ENSCPOG00000006509) #18	C1orf54 (ENSCPOG00000026169) #19	ENSCPOG00000035575	MRPS21 (ENSCPOG00000020443) #21	PRPF3 (ENSCPOG00000008068) #22	RPRD2 (ENSCPOG00000040179) #23	ENSCPOG00000010586 #24	ECM1 (ENSCPOG00000010599) #25	ADAMTSL4 (ENSCPOG00000011954) #26	MCL1 (ENSCPOG00000040407) #27	ENSA (ENSCPOG00000033807) #28	GOLPH3L (ENSCPOG00000005605) #29	HORMAD1 (ENSCPOG00000006235) #30	CTSS (ENSCPOG00000010629) #31	CTSK (ENSCPOG00000023854) #32	Arnt (ENSCPOG00000014578) #33	SETDB1 (ENSCPOG00000001632) #35	CERS2 (ENSCPOG00000001637) #36	ANXA9 (ENSCPOG00000001639) #37	MINDY1 (ENSCPOG00000001640)
Hystricomorpha_b	ANCESTRAL SPECIES	79	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00940000164936	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00900000143229	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37	ENSGT00390000016607.b
Degu	DUPLICATION
Degu	MODERN SPECIES	89	H2AC21 (ENSODEG00000019872) #8	BOLA1 (ENSODEG00000020128) #9	SV2A (ENSODEG00000011688) #10	MTMR11 (ENSODEG00000012623) #12	OTUD7B (ENSODEG00000011926) #13	ENSODEG00000019951	VPS45 (ENSODEG00000012615) #14	PLEKHO1 (ENSODEG00000011477) #15	ENSODEG00000013093 #16	CA14 (ENSODEG00000012540) #17	APH1A (ENSODEG00000011643) #18	ENSODEG00000013067 #19	ENSODEG00000012686	ENSODEG00000013089	ENSODEG00000011678 #21	ENSODEG00000011363 #22	RPRD2 (ENSODEG00000012617) #23	TARS2 (ENSODEG00000011883) #24	ECM1 (ENSODEG00000011744) #25	ENSODEG00000013487 #26	ENSODEG00000011170 #28	GOLPH3L (ENSODEG00000011029) #29	HORMAD1 (ENSODEG00000012417) #30	CTSS (ENSODEG00000010580) #31	ENSODEG00000012573 #32	ENSODEG00000011559 #33	ENSODEG00000012445	ENSODEG00000012710	SETDB1 (ENSODEG00000012471) #35	CERS2 (ENSODEG00000012022) #36	ANXA9 (ENSODEG00000011014) #37
Degu	MODERN SPECIES	53	ENSODEG00000011527	ENSODEG00000019923	ENSODEG00000011838	ENSODEG00000019857	POU2AF2 (ENSODEG00000011866)	POU2AF3 (ENSODEG00000012452)	POU2AF1 (ENSODEG00000013999)	ENSODEG00000014568	HOATZ (ENSODEG00000011858)	LAYN (ENSODEG00000010958)	ENSODEG00000010835	PPP2R1B (ENSODEG00000010197)	ALG9 (ENSODEG00000010112)	FDXACB1 (ENSODEG00000010360)	CFAP68 (ENSODEG00000011045)	ENSODEG00000014412 #22	ENSODEG00000010416	ENSODEG00000010149	AEBP2 (ENSODEG00000010983)	PLEKHA5 (ENSODEG00000010352)	CAPZA3 (ENSODEG00000019743)	PLCZ1 (ENSODEG00000010466)	ENSODEG00000010874	RERGL (ENSODEG00000009768)	ENSODEG00000019835	LMO3 (ENSODEG00000009624)	ENSODEG00000012530	SLC15A5 (ENSODEG00000011667)	DERA (ENSODEG00000011034)	ENSODEG00000010600	ENSODEG00000009964
Long-tailed chinchilla	MODERN SPECIES	120	H2AC20 (ENSCLAG00000017761) #7	H2AC21 (ENSCLAG00000017864) #8	BOLA1 (ENSCLAG00000014314) #9	SV2A (ENSCLAG00000014270) #10	SF3B4 (ENSCLAG00000015851) #11	MTMR11 (ENSCLAG00000014280) #12	OTUD7B (ENSCLAG00000015021) #13	VPS45 (ENSCLAG00000013589) #14	PLEKHO1 (ENSCLAG00000011850) #15	ANP32E (ENSCLAG00000016237) #16	CA14 (ENSCLAG00000015749) #17	APH1A (ENSCLAG00000013532) #18	C1orf54 (ENSCLAG00000012077) #19	ENSCLAG00000011743	MRPS21 (ENSCLAG00000013383) #21	PRPF3 (ENSCLAG00000015009) #22	RPRD2 (ENSCLAG00000013296) #23	TARS2 (ENSCLAG00000017274) #24	ECM1 (ENSCLAG00000016478) #25	ADAMTSL4 (ENSCLAG00000013321) #26	ENSA (ENSCLAG00000013424) #28	GOLPH3L (ENSCLAG00000013290) #29	HORMAD1 (ENSCLAG00000012872) #30	CTSS (ENSCLAG00000012118) #31
Naked mole-rat female	MODERN SPECIES	10	SV2A (ENSHGLG00000011320) #10	SF3B4 (ENSHGLG00000012360) #11	MTMR11 (ENSHGLG00000013532) #12	OTUD7B (ENSHGLG00000019136) #13	VPS45 (ENSHGLG00000018897) #14	PLEKHO1 (ENSHGLG00000046314) #15	ENSHGLG00000015344	ENSHGLG00000005468 #16	ENSHGLG00000032045	CA14 (ENSHGLG00000035588) #17	APH1A (ENSHGLG00000009612) #18	C1orf54 (ENSHGLG00000016156) #19	ENSHGLG00000045708	CIART (ENSHGLG00000016271) #20	MRPS21 (ENSHGLG00000016350) #21	PRPF3 (ENSHGLG00000016569) #22	RPRD2 (ENSHGLG00000013969) #23	TARS2 (ENSHGLG00000009219) #24	ECM1 (ENSHGLG00000010310) #25	MCL1 (ENSHGLG00000012559) #27	ENSHGLG00000013275	ENSHGLG00000038606	ENSA (ENSHGLG00000015451) #28	ENSHGLG00000049426	GOLPH3L (ENSHGLG00000042052) #29	HORMAD1 (ENSHGLG00000013087) #30	ENSHGLG00000038892 #31	ENSHGLG00000041980	ENSHGLG00000018535	HMGCS2 (ENSHGLG00000016719)	ENSHGLG00000016686
Sciuridae	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028.z #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.i.b #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413.q.b #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Marmotini	ANCESTRAL SPECIES	33	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.u #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028.z #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.i.b #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00940000164936	ENSGT00500000045038.r #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413.q.b #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Marmotini_b	ANCESTRAL SPECIES	77	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.u #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028.z #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.i.b #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00940000164936	ENSGT00500000045038.r #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413.q.b #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Arctic ground squirrel	MODERN SPECIES	298	H2BC21 (ENSUPAG00010001528)	H2AC20 (ENSUPAG00010001531) #7	H2AC21 (ENSUPAG00010001539) #8	ENSUPAG00010001547 #9	SV2A (ENSUPAG00010001558) #10	SF3B4 (ENSUPAG00010001576) #11	MTMR11 (ENSUPAG00010001597) #12	OTUD7B (ENSUPAG00010001643) #13	VPS45 (ENSUPAG00010001671) #14	PLEKHO1 (ENSUPAG00010001743) #15	ENSUPAG00010001759 #16	CA14 (ENSUPAG00010001770) #17	APH1A (ENSUPAG00010001823) #18	C1orf54 (ENSUPAG00010001839) #19	CIART (ENSUPAG00010001847) #20	PRPF3 (ENSUPAG00010001860) #22	RPRD2 (ENSUPAG00010001879) #23	TARS2 (ENSUPAG00010001943) #24	ECM1 (ENSUPAG00010002264) #25	ADAMTSL4 (ENSUPAG00010002294) #26	MCL1 (ENSUPAG00010002404) #27	ENSA (ENSUPAG00010002412) #28	HORMAD1 (ENSUPAG00010002435) #30	CTSS (ENSUPAG00010002451) #31	CTSK (ENSUPAG00010002778) #32	ARNT (ENSUPAG00010002789) #33	CTXND2 (ENSUPAG00010002982) #34	SETDB1 (ENSUPAG00010002991) #35	CERS2 (ENSUPAG00010003717) #36	ANXA9 (ENSUPAG00010003775) #37	MINDY1 (ENSUPAG00010003812)
Squirrel	MODERN SPECIES	180	H2BC21 (ENSSTOG00000028429)	H2AC20 (ENSSTOG00000025400) #7	H2AC21 (ENSSTOG00000021582) #8	SV2A (ENSSTOG00000006537) #10	ENSSTOG00000000684 #11	MTMR11 (ENSSTOG00000006589) #12	OTUD7B (ENSSTOG00000026621) #13	VPS45 (ENSSTOG00000014236) #14	PLEKHO1 (ENSSTOG00000014249) #15	ENSSTOG00000004170 #16	CA14 (ENSSTOG00000027815) #17	APH1A (ENSSTOG00000006041) #18	C1orf54 (ENSSTOG00000006055) #19	ENSSTOG00000024097	ENSSTOG00000019516 #21	PRPF3 (ENSSTOG00000001889) #22	RPRD2 (ENSSTOG00000001895) #23	TARS2 (ENSSTOG00000008311) #24	ECM1 (ENSSTOG00000008340) #25	ADAMTSL4 (ENSSTOG00000024198) #26	MCL1 (ENSSTOG00000027465) #27	ENSA (ENSSTOG00000002742) #28	GOLPH3L (ENSSTOG00000002747) #29	HORMAD1 (ENSSTOG00000002768) #30	CTSS (ENSSTOG00000021432) #31	CTSK (ENSSTOG00000013868) #32	ARNT (ENSSTOG00000013876) #33	SETDB1 (ENSSTOG00000006770) #35	CERS2 (ENSSTOG00000006797) #36	ANXA9 (ENSSTOG00000006824) #37	MINDY1 (ENSSTOG00000006840)
Alpin marmot	MODERN SPECIES	85	ENSMMMG00000019638	ENSMMMG00000019631	H2BC21 (ENSMMMG00000019629)	H2AC20 (ENSMMMG00000019626) #7	SV2A (ENSMMMG00000019622) #10	ENSMMMG00000019615 #11	MTMR11 (ENSMMMG00000019604) #12	OTUD7B (ENSMMMG00000019569) #13	VPS45 (ENSMMMG00000019551) #14	PLEKHO1 (ENSMMMG00000019549) #15	ENSMMMG00000019537 #16	CA14 (ENSMMMG00000019528) #17	APH1A (ENSMMMG00000019524) #18	C1orf54 (ENSMMMG00000019516) #19	CIART (ENSMMMG00000019509) #20	PRPF3 (ENSMMMG00000019495) #22	RPRD2 (ENSMMMG00000019468) #23	TARS2 (ENSMMMG00000019396) #24	ECM1 (ENSMMMG00000019374) #25	ADAMTSL4 (ENSMMMG00000019345) #26	ENSMMMG00000019337 #28	GOLPH3L (ENSMMMG00000019322) #29	HORMAD1 (ENSMMMG00000019288) #30	CTSS (ENSMMMG00000019262) #31	CTSK (ENSMMMG00000019259) #32	ARNT (ENSMMMG00000019205) #33	CTXND2 (ENSMMMG00000019184) #34	SETDB1 (ENSMMMG00000019144) #35	CERS2 (ENSMMMG00000019137) #36	ANXA9 (ENSMMMG00000019113) #37	MINDY1 (ENSMMMG00000019104)
Eurasian red squirrel	MODERN SPECIES		H2AC21 (ENSSVLG00005000146) #8	BOLA1 (ENSSVLG00005000149) #9	SV2A (ENSSVLG00005000231) #10	SF3B4 (ENSSVLG00005000373) #11	MTMR11 (ENSSVLG00005000407) #12	OTUD7B (ENSSVLG00005000477) #13	ENSSVLG00005000516	ENSSVLG00005000542 #14	PLEKHO1 (ENSSVLG00005000612) #15	ENSSVLG00005000716 #16	CA14 (ENSSVLG00005000883) #17	APH1A (ENSSVLG00005000921) #18	C1orf54 (ENSSVLG00005000974) #19	CIART (ENSSVLG00005000997) #20	MRPS21 (ENSSVLG00005001010) #21	PRPF3 (ENSSVLG00005001025) #22	RPRD2 (ENSSVLG00005001061) #23	TARS2 (ENSSVLG00005001101) #24	ECM1 (ENSSVLG00005001143) #25	ADAMTSL4 (ENSSVLG00005001195) #26	MCL1 (ENSSVLG00005001232) #27	ENSSVLG00005001308 #28	ENSSVLG00005001356	GOLPH3L (ENSSVLG00005001367) #29	HORMAD1 (ENSSVLG00005001438) #30	ENSSVLG00005001503	CTSS (ENSSVLG00005001527) #31	CTSK (ENSSVLG00005001562) #32	ARNT (ENSSVLG00005001590) #33	CTXND2 (ENSSVLG00005001652) #34	SETDB1 (ENSSVLG00005001698) #35
Rodentia_B	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Muroidea	ANCESTRAL SPECIES	6	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.u #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.u #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.t.b #16	ENSGT00950000182907.a.a.u #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.u #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37	ENSGT00390000016607.b
Cricetinae	ANCESTRAL SPECIES	12	ENSGT01100000263506.a.e.b	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.t.b #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.u #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37	ENSGT00390000016607.b
Chinese hamster chok1gshd	MODERN SPECIES	66	H2ac21 (ENSCGRG00001011919) #8	Bola1 (ENSCGRG00001011268) #9	Sv2a (ENSCGRG00001020508) #10	Sf3b4 (ENSCGRG00001003590) #11	Mtmr11 (ENSCGRG00001016961) #12	Otud7b (ENSCGRG00001023406) #13	Vps45 (ENSCGRG00001024791) #14	Plekho1 (ENSCGRG00001011990) #15	ENSCGRG00001017709 #16	ENSCGRG00001022251	Car14 (ENSCGRG00001001363) #17	Aph1a (ENSCGRG00001024346) #18	BC028528 (ENSCGRG00001011710) #19	Ciart (ENSCGRG00001021140) #20	ENSCGRG00001015258 #21	Prpf3 (ENSCGRG00001019100) #22	Rprd2 (ENSCGRG00001021587) #23	Tars2 (ENSCGRG00001023517) #24	Ecm1 (ENSCGRG00001009335) #25	ENSCGRG00001003470	Adamtsl4 (ENSCGRG00001017255) #26	Mcl1 (ENSCGRG00001017446) #27	Ensa (ENSCGRG00001022170) #28	Golph3l (ENSCGRG00001000763) #29	Hormad1 (ENSCGRG00001016359) #30	Ctss (ENSCGRG00001009630) #31	Ctsk (ENSCGRG00001018122) #32	Arnt (ENSCGRG00001020065) #33	ENSCGRG00001022347	Ctxnd2 (ENSCGRG00001010032) #34	Setdb1 (ENSCGRG00001010822) #35
Golden Hamster	MODERN SPECIES	782	ENSMAUG00000005554	ENSMAUG00000005836	Bola1 (ENSMAUG00000020828) #9	Sv2a (ENSMAUG00000019595) #10	Sf3b4 (ENSMAUG00000015266) #11	Mtmr11 (ENSMAUG00000017521) #12	Otud7b (ENSMAUG00000017029) #13	Vps45 (ENSMAUG00000020648) #14	Plekho1 (ENSMAUG00000017313) #15	Anp32e (ENSMAUG00000011419) #16	Car14 (ENSMAUG00000019851) #17	Aph1a (ENSMAUG00000009007) #18	BC028528 (ENSMAUG00000009366) #19	ENSMAUG00000001664	ENSMAUG00000014535 #21	Prpf3 (ENSMAUG00000017112) #22	Rprd2 (ENSMAUG00000019875) #23	Tars2 (ENSMAUG00000008184) #24	Ecm1 (ENSMAUG00000016262) #25	Adamtsl4 (ENSMAUG00000014851) #26	Mcl1 (ENSMAUG00000007430) #27	Ensa (ENSMAUG00000008619) #28	Golph3l (ENSMAUG00000012523) #29	Hormad1 (ENSMAUG00000020053) #30	Ctss (ENSMAUG00000021301) #31	Ctsk (ENSMAUG00000019242) #32	ENSMAUG00000009522 #33	Setdb1 (ENSMAUG00000021391) #35	Cers2 (ENSMAUG00000015178) #36	Anxa9 (ENSMAUG00000021724) #37	Mindy1 (ENSMAUG00000020108)
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.u #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.u #21	ENSGT00500000045038.v.a.b #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37	ENSGT00390000016607.b
Northern American deer mouse	MODERN SPECIES	19	Bola1 (ENSPEMG00000008051) #9	Sv2a (ENSPEMG00000008887) #10	Sf3b4 (ENSPEMG00000017568) #11	Mtmr11 (ENSPEMG00000014402) #12	Otud7b (ENSPEMG00000027312) #13	ENSPEMG00000030134	Vps45 (ENSPEMG00000018774) #14	Plekho1 (ENSPEMG00000015477) #15	Anp32e (ENSPEMG00000000742) #16	Car14 (ENSPEMG00000011085) #17	Aph1a (ENSPEMG00000015896) #18	BC028528 (ENSPEMG00000009975) #19	Ciart (ENSPEMG00000002076) #20	ENSPEMG00000013980 #21	ENSPEMG00000030510	Prpf3 (ENSPEMG00000011672) #22	ENSPEMG00000024405	Rprd2 (ENSPEMG00000013381) #23	Tars2 (ENSPEMG00000014203) #24	Ecm1 (ENSPEMG00000016753) #25	Adamtsl4 (ENSPEMG00000008970) #26	ENSPEMG00000031072 #27	Ensa (ENSPEMG00000024023) #28	Golph3l (ENSPEMG00000029486) #29	Hormad1 (ENSPEMG00000012403) #30	Ctss (ENSPEMG00000009697) #31	Ctsk (ENSPEMG00000001057) #32	Arnt (ENSPEMG00000029682) #33	Setdb1 (ENSPEMG00000010553) #35	Cers2 (ENSPEMG00000016044) #36	ENSPEMG00000030061
Prairie vole	MODERN SPECIES	8	ENSMOCG00000007571	H2ac21 (ENSMOCG00000008450) #8	Bola1 (ENSMOCG00000016236) #9	Sv2a (ENSMOCG00000000375) #10	ENSMOCG00000013658 #11	Mtmr11 (ENSMOCG00000017943) #12	Otud7b (ENSMOCG00000005067) #13	Vps45 (ENSMOCG00000014888) #14	Plekho1 (ENSMOCG00000016679) #15	Anp32e (ENSMOCG00000002258) #16	Car14 (ENSMOCG00000014152) #17	Aph1a (ENSMOCG00000022720) #18	BC028528 (ENSMOCG00000003466) #19	Ciart (ENSMOCG00000020599) #20	ENSMOCG00000004675 #21	Prpf3 (ENSMOCG00000000242) #22	ENSMOCG00000013494 #23	Tars2 (ENSMOCG00000018432) #24	Ecm1 (ENSMOCG00000019294) #25	Adamtsl4 (ENSMOCG00000008356) #26	Mcl1 (ENSMOCG00000000395) #27	Ensa (ENSMOCG00000017464) #28	Golph3l (ENSMOCG00000018491) #29	Hormad1 (ENSMOCG00000018601) #30	Ctss (ENSMOCG00000022241) #31	Ctsk (ENSMOCG00000022513) #32	Arnt (ENSMOCG00000001627) #33	Setdb1 (ENSMOCG00000017407) #35	Cers2 (ENSMOCG00000001144) #36	Anxa9 (ENSMOCG00000000205) #37	Mindy1 (ENSMOCG00000021873)
Murinae	ANCESTRAL SPECIES	5	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.u #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Mus	ANCESTRAL SPECIES	7	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.u #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.u #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413.v #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.u #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103.a.a #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413.v #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Mouse	MODERN SPECIES	12	H2ac20 (ENSMUSG00000068855) #7	H2ac21 (ENSMUSG00000063689) #8	Bola1 (ENSMUSG00000015943) #9	Sv2a (ENSMUSG00000038486) #10	Sf3b4 (ENSMUSG00000068856) #11	Mtmr11 (ENSMUSG00000045934) #12	Otud7b (ENSMUSG00000038495) #13	Vps45 (ENSMUSG00000015747) #14	Plekho1 (ENSMUSG00000015745) #15	Anp32e (ENSMUSG00000015749) #16	Car14 (ENSMUSG00000038526) #17	Aph1a (ENSMUSG00000015750) #18	BC028528 (ENSMUSG00000038543) #19	Ciart (ENSMUSG00000038550) #20	Mrps21 (ENSMUSG00000054312) #21	Prpf3 (ENSMUSG00000015748) #22	Rprd2 (ENSMUSG00000028106) #23	Tars2 (ENSMUSG00000028107) #24	Ecm1 (ENSMUSG00000028108) #25	Adamtsl4 (ENSMUSG00000015850) #26	Mcl1 (ENSMUSG00000038612) #27	Ensa (ENSMUSG00000038619) #28	Golph3l (ENSMUSG00000046519) #29	Hormad1 (ENSMUSG00000028109) #30	Ctss (ENSMUSG00000038642) #31	Ctsk (ENSMUSG00000028111) #32	Arnt (ENSMUSG00000015522) #33	Ctxnd2 (ENSMUSG00000105734) #34	Setdb1 (ENSMUSG00000015697) #35	Cers2 (ENSMUSG00000015714) #36	Anxa9 (ENSMUSG00000015702) #37
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.u #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103.a.a #19	ENSGT00390000018360 #20	ENSGT00500000045038.t #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413.v #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000170759	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36
Steppe mouse	MODERN SPECIES	3111	ENSMSIG00000008164	ENSMSIG00000008132	Bola1 (ENSMSIG00000008109) #9	Sv2a (ENSMSIG00000008068) #10	Sf3b4 (ENSMSIG00000008017) #11	Mtmr11 (ENSMSIG00000007965) #12	Otud7b (ENSMSIG00000007920) #13	Vps45 (ENSMSIG00000007881) #14	ENSMSIG00000007830 #15	Anp32e (ENSMSIG00000007657) #16	Car14 (ENSMSIG00000007599) #17	ENSMSIG00000007562 #18	BC028528 (ENSMSIG00000007460) #19	ENSMSIG00000007429 #20	ENSMSIG00000007397 #21	Prpf3 (ENSMSIG00000007342) #22	Rprd2 (ENSMSIG00000007289) #23	Tars2 (ENSMSIG00000006741) #24	Ecm1 (ENSMSIG00000006669) #25	Adamtsl4 (ENSMSIG00000006628) #26	Mcl1 (ENSMSIG00000006604) #27	Ensa (ENSMSIG00000006584) #28	Golph3l (ENSMSIG00000006388) #29	ENSMSIG00000006052 #30	Ctss (ENSMSIG00000005997) #31	Ctsk (ENSMSIG00000005966) #32	Arnt (ENSMSIG00000005683) #33	ENSMSIG00000005664	ENSMSIG00000005661	Ctxnd2 (ENSMSIG00000005609) #34	Setdb1 (ENSMSIG00000005513) #35
spretus	MODERN SPECIES	12	H2ac20 (MGP_SPRETEiJ_G0026313) #7	H2ac21 (MGP_SPRETEiJ_G0026312) #8	Bola1 (MGP_SPRETEiJ_G0026311) #9	Sv2a (MGP_SPRETEiJ_G0026310) #10	Sf3b4 (MGP_SPRETEiJ_G0026309) #11	Mtmr11 (MGP_SPRETEiJ_G0026308) #12	Otud7b (MGP_SPRETEiJ_G0026307) #13	Vps45 (MGP_SPRETEiJ_G0026306) #14	Plekho1 (MGP_SPRETEiJ_G0026305) #15	Anp32e (MGP_SPRETEiJ_G0026304) #16	Car14 (MGP_SPRETEiJ_G0026303) #17	Aph1a (MGP_SPRETEiJ_G0026302) #18	BC028528 (MGP_SPRETEiJ_G0026301) #19	Ciart (MGP_SPRETEiJ_G0026300) #20	Mrps21 (MGP_SPRETEiJ_G0026299) #21	Prpf3 (MGP_SPRETEiJ_G0026298) #22	Rprd2 (MGP_SPRETEiJ_G0026297) #23	Tars2 (MGP_SPRETEiJ_G0026296) #24	Ecm1 (MGP_SPRETEiJ_G0026295) #25	Adamtsl4 (MGP_SPRETEiJ_G0026294) #26	Mcl1 (MGP_SPRETEiJ_G0026293) #27	Ensa (MGP_SPRETEiJ_G0026292) #28	MGP_SPRETEiJ_G0026291 ##29	MGP_SPRETEiJ_G0026290 #30	Ctss (MGP_SPRETEiJ_G0026289) #31	Ctsk (MGP_SPRETEiJ_G0026288) #32	Arnt (MGP_SPRETEiJ_G0026287) #33	Cers2 (MGP_SPRETEiJ_G0026285) #36	Anxa9 (MGP_SPRETEiJ_G0026284) #37	Mindy1 (MGP_SPRETEiJ_G0026283)	Prune1 (MGP_SPRETEiJ_G0026282)
Ryukyu mouse	MODERN SPECIES	12	H2ac20 (MGP_CAROLIEiJ_G0025369) #7	H2ac21 (MGP_CAROLIEiJ_G0025368) #8	Bola1 (MGP_CAROLIEiJ_G0025367) #9	Sv2a (MGP_CAROLIEiJ_G0025366) #10	Sf3b4 (MGP_CAROLIEiJ_G0025365) #11	Mtmr11 (MGP_CAROLIEiJ_G0025364) #12	Otud7b (MGP_CAROLIEiJ_G0025363) #13	Vps45 (MGP_CAROLIEiJ_G0025362) #14	Plekho1 (MGP_CAROLIEiJ_G0025361) #15	Anp32e (MGP_CAROLIEiJ_G0025360) #16	Car14 (MGP_CAROLIEiJ_G0025359) #17	Aph1a (MGP_CAROLIEiJ_G0025358) #18	BC028528 (MGP_CAROLIEiJ_G0025357) #19	MGP_CAROLIEiJ_G0025356 #20	Mrps21 (MGP_CAROLIEiJ_G0025355) #21	Prpf3 (MGP_CAROLIEiJ_G0025354) #22	Rprd2 (MGP_CAROLIEiJ_G0025353) #23	Tars2 (MGP_CAROLIEiJ_G0025352) #24	Ecm1 (MGP_CAROLIEiJ_G0025351) #25	Adamtsl4 (MGP_CAROLIEiJ_G0025350) #26	Mcl1 (MGP_CAROLIEiJ_G0025349) #27	Ensa (MGP_CAROLIEiJ_G0025348) #28	MGP_CAROLIEiJ_G0025347 ##29	Hormad1 (MGP_CAROLIEiJ_G0025346) #30	Ctss (MGP_CAROLIEiJ_G0025345) #31	Ctsk (MGP_CAROLIEiJ_G0025344) #32	Arnt (MGP_CAROLIEiJ_G0025343) #33	Setdb1 (MGP_CAROLIEiJ_G0025342) #35	Cers2 (MGP_CAROLIEiJ_G0025341) #36	Anxa9 (MGP_CAROLIEiJ_G0025340) #37	Mindy1 (MGP_CAROLIEiJ_G0025339)
Shrew mouse	MODERN SPECIES	17	H2ac20 (MGP_PahariEiJ_G0026813) #7	H2ac21 (MGP_PahariEiJ_G0026812) #8	Bola1 (MGP_PahariEiJ_G0026811) #9	Sv2a (MGP_PahariEiJ_G0026810) #10	Sf3b4 (MGP_PahariEiJ_G0026809) #11	Mtmr11 (MGP_PahariEiJ_G0026808) #12	Otud7b (MGP_PahariEiJ_G0026807) #13	Vps45 (MGP_PahariEiJ_G0026806) #14	Plekho1 (MGP_PahariEiJ_G0026805) #15	MGP_PahariEiJ_G0026804 #16	Car14 (MGP_PahariEiJ_G0026803) #17	Aph1a (MGP_PahariEiJ_G0026802) #18	BC028528 (MGP_PahariEiJ_G0026801) #19	Ciart (MGP_PahariEiJ_G0026800) #20	Mrps21 (MGP_PahariEiJ_G0026799) #21	Prpf3 (MGP_PahariEiJ_G0026798) #22	Rprd2 (MGP_PahariEiJ_G0026797) #23	Tars2 (MGP_PahariEiJ_G0026796) #24	Ecm1 (MGP_PahariEiJ_G0026795) #25	Adamtsl4 (MGP_PahariEiJ_G0026794) #26	Mcl1 (MGP_PahariEiJ_G0026793) #27	Ensa (MGP_PahariEiJ_G0026792) #28	Golph3l (MGP_PahariEiJ_G0026791) #29	Hormad1 (MGP_PahariEiJ_G0026790) #30	Ctss (MGP_PahariEiJ_G0026789) #31	Ctsk (MGP_PahariEiJ_G0026788) #32	Arnt (MGP_PahariEiJ_G0026787) #33	Cers2 (MGP_PahariEiJ_G0026785) #36	Anxa9 (MGP_PahariEiJ_G0026784) #37	Mindy1 (MGP_PahariEiJ_G0026783)	Prune1 (MGP_PahariEiJ_G0026782)
Rat	MODERN SPECIES	11	ENSRNOG00000062927	Bola1 (ENSRNOG00000021185) #9	Sv2a (ENSRNOG00000021182) #10	Sf3b4 (ENSRNOG00000021181) #11	Mtmr11 (ENSRNOG00000021176) #12	Otud7b (ENSRNOG00000042068) #13	Vps45 (ENSRNOG00000021173) #14	Plekho1 (ENSRNOG00000021170) #15	RGD1562196 (ENSRNOG00000065202)	Anp32e (ENSRNOG00000021168) #16	Car14 (ENSRNOG00000023162) #17	Aph1a (ENSRNOG00000023816) #18	C2H1orf54 (ENSRNOG00000059750) #19	Ciart (ENSRNOG00000042717) #20	Mrps21 (ENSRNOG00000024845) #21	Prpf3 (ENSRNOG00000025629) #22	Rprd2 (ENSRNOG00000054294) #23	Tars2 (ENSRNOG00000057194) #24	Ecm1 (ENSRNOG00000021166) #25	Adamtsl4 (ENSRNOG00000049385) #26	Mcl1 (ENSRNOG00000063678) #27	Ensa (ENSRNOG00000048617) #28	Golph3l (ENSRNOG00000047620) #29	Hormad1 (ENSRNOG00000021160) #30	Ctss (ENSRNOG00000021157) #31	Ctsk (ENSRNOG00000021155) #32	Arnt (ENSRNOG00000031174) #33	Setdb1 (ENSRNOG00000021143) #35	Cers2 (ENSRNOG00000021138) #36	Anxa9 (ENSRNOG00000021134) #37	Mindy1 (ENSRNOG00000021131)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1243	Bola1 (ENSNGAG00000024327) #9	Sv2a (ENSNGAG00000024242) #10	Sf3b4 (ENSNGAG00000016337) #11	Mtmr11 (ENSNGAG00000015085) #12	Otud7b (ENSNGAG00000019612) #13	Vps45 (ENSNGAG00000001159) #14	ENSNGAG00000005098	Plekho1 (ENSNGAG00000002001) #15	Anp32e (ENSNGAG00000010494) #16	ENSNGAG00000023116	Car14 (ENSNGAG00000013264) #17	Aph1a (ENSNGAG00000019336) #18	BC028528 (ENSNGAG00000011340) #19	ENSNGAG00000009739	Mrps21 (ENSNGAG00000001847) #21	Prpf3 (ENSNGAG00000000910) #22	Rprd2 (ENSNGAG00000024252) #23	ENSNGAG00000024279 #24
Kangaroo rat	MODERN SPECIES	345	ENSDORG00000028335	H2ac20 (ENSDORG00000024205) #7	H2ac21 (ENSDORG00000024245) #8	Bola1 (ENSDORG00000016364) #9	Sv2a (ENSDORG00000016365) #10	Sf3b4 (ENSDORG00000016366) #11	Mtmr11 (ENSDORG00000016368) #12	Otud7b (ENSDORG00000005008) #13	Vps45 (ENSDORG00000005012) #14	Plekho1 (ENSDORG00000005015) #15	ENSDORG00000011690 #16	Aph1a (ENSDORG00000011694) #18	BC028528 (ENSDORG00000011695) #19	ENSDORG00000025269	Mrps21 (ENSDORG00000030111) #21	Prpf3 (ENSDORG00000008664) #22	Rprd2 (ENSDORG00000023813) #23	Tars2 (ENSDORG00000007569) #24	Ecm1 (ENSDORG00000007570) #25	Adamtsl4 (ENSDORG00000000397) #26	Mcl1 (ENSDORG00000011424) #27	Ensa (ENSDORG00000011425) #28	Golph3l (ENSDORG00000024987) #29	Hormad1 (ENSDORG00000008931) #30	Ctss (ENSDORG00000011000) #31	Ctsk (ENSDORG00000027450) #32	ENSDORG00000023883 #33	Setdb1 (ENSDORG00000006830) #35	Cers2 (ENSDORG00000006831) #36	Anxa9 (ENSDORG00000009615) #37	Mindy1 (ENSDORG00000007366)
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Rabbit	MODERN SPECIES	4	H2BC21 (ENSOCUG00000023535)	ENSOCUG00000037254	BOLA1 (ENSOCUG00000004609) #9	SV2A (ENSOCUG00000003894) #10	SF3B4 (ENSOCUG00000004614) #11	MTMR11 (ENSOCUG00000004616) #12	OTUD7B (ENSOCUG00000013924) #13	ENSOCUG00000014360 #14	PLEKHO1 (ENSOCUG00000006316) #15	ENSOCUG00000022805 #16	CA14 (ENSOCUG00000009032) #17	APH1A (ENSOCUG00000009037) #18	C1orf54 (ENSOCUG00000027251) #19	CIART (ENSOCUG00000009044) #20	ENSOCUG00000027120 #21	PRPF3 (ENSOCUG00000011760) #22	RPRD2 (ENSOCUG00000011770) #23	TARS2 (ENSOCUG00000031561) #24	ECM1 (ENSOCUG00000011786) #25	ADAMTSL4 (ENSOCUG00000000927) #26	MCL1 (ENSOCUG00000012152) #27	ENSOCUG00000003267 #28	GOLPH3L (ENSOCUG00000032306) #29	HORMAD1 (ENSOCUG00000003275) #30	CTSS (ENSOCUG00000011085) #31	CTSK (ENSOCUG00000011090) #32	ARNT (ENSOCUG00000013582) #33	CTXND2 (ENSOCUG00000030922) #34	SETDB1 (ENSOCUG00000003642) #35	CERS2 (ENSOCUG00000022419) #36	ANXA9 (ENSOCUG00000014955) #37
Pika	MODERN SPECIES	1824											ANP32E (ENSOPRG00000010058) #16	CA14 (ENSOPRG00000010068) #17	APH1A (ENSOPRG00000010094) #18	C1orf54 (ENSOPRG00000010110) #19	CIART (ENSOPRG00000010122) #20	PRPF3 (ENSOPRG00000010139) #22	RPRD2 (ENSOPRG00000010157) #23	TARS2 (ENSOPRG00000010194) #24	ECM1 (ENSOPRG00000010217) #25	ADAMTSL4 (ENSOPRG00000010235) #26	GOLPH3L (ENSOPRG00000010308) #29	ENSOPRG00000010315	ENSOPRG00000010319 ##30	CTSS (ENSOPRG00000010347) #31	CTSK (ENSOPRG00000010357) #32	ARNT (ENSOPRG00000010374) #33
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Eulipotyphla	ANCESTRAL SPECIES	120												ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00390000011497 #22
Common shrew	MODERN SPECIES	1386												CA14 (ENSSARG00000010988) #17	APH1A (ENSSARG00000011040) #18	C1orf54 (ENSSARG00000011048) #19	ENSSARG00000011056 #20	PRPF3 (ENSSARG00000011064) #22
Hedgehog	MODERN SPECIES	1898																PRPF3 (ENSEEUG00000007338) #22
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Suina	ANCESTRAL SPECIES	8	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Pig	MODERN SPECIES	12	H2AC20 (ENSSSCG00000034598) #7	H2AC21 (ENSSSCG00000063420) #8	BOLA1 (ENSSSCG00000006667) #9	SV2A (ENSSSCG00000006666) #10	SF3B4 (ENSSSCG00000006665) #11	MTMR11 (ENSSSCG00000006664) #12	OTUD7B (ENSSSCG00000006663) #13	VPS45 (ENSSSCG00000006661) #14	PLEKHO1 (ENSSSCG00000022784) #15	ANP32E (ENSSSCG00000035209) #16	CA14 (ENSSSCG00000027875) #17	APH1A (ENSSSCG00000028297) #18	C1orf54 (ENSSSCG00000045950) #19	CIART (ENSSSCG00000038374) #20	ENSSSCG00000052263 #21	PRPF3 (ENSSSCG00000030119) #22	RPRD2 (ENSSSCG00000030291) #23	TARS2 (ENSSSCG00000026395) #24	ECM1 (ENSSSCG00000029230) #25	ADAMTSL4 (ENSSSCG00000006651) #26	MCL1 (ENSSSCG00000039314) #27	ENSA (ENSSSCG00000006653) #28	ENSSSCG00000049503	GOLPH3L (ENSSSCG00000038558) #29	HORMAD1 (ENSSSCG00000006649) #30	CTSS (ENSSSCG00000006648) #31	CTSK (ENSSSCG00000052889) #32	ARNT (ENSSSCG00000006646) #33	CTXND2 (ENSSSCG00000057128) #34	SETDB1 (ENSSSCG00000006645) #35	CERS2 (ENSSSCG00000006644) #36
Chacoan peccary	MODERN SPECIES	29	H2AC21 (ENSCWAG00000010470) #8	BOLA1 (ENSCWAG00000010457) #9	SV2A (ENSCWAG00000010325) #10	SF3B4 (ENSCWAG00000010291) #11	MTMR11 (ENSCWAG00000009987) #12	OTUD7B (ENSCWAG00000009903) #13	ENSCWAG00000009861	VPS45 (ENSCWAG00000009712) #14	PLEKHO1 (ENSCWAG00000009593) #15	ANP32E (ENSCWAG00000009540) #16	CA14 (ENSCWAG00000009438) #17	APH1A (ENSCWAG00000009346) #18	C1orf54 (ENSCWAG00000009306) #19	CIART (ENSCWAG00000009100) #20	MRPS21 (ENSCWAG00000009071) #21	PRPF3 (ENSCWAG00000008995) #22	RPRD2 (ENSCWAG00000008913) #23	TARS2 (ENSCWAG00000008672) #24	ECM1 (ENSCWAG00000008573) #25	ADAMTSL4 (ENSCWAG00000008396) #26	MCL1 (ENSCWAG00000008263) #27	ENSCWAG00000008100 #28	GOLPH3L (ENSCWAG00000008042) #29	HORMAD1 (ENSCWAG00000007637) #30	CTSS (ENSCWAG00000007587) #31	CTSK (ENSCWAG00000007556) #32	ARNT (ENSCWAG00000007457) #33	CTXND2 (ENSCWAG00000007433) #34	SETDB1 (ENSCWAG00000007313) #35	CERS2 (ENSCWAG00000007281) #36	ANXA9 (ENSCWAG00000007232) #37
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Cetacea	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b.m #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00390000016607.b
Odontoceti	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b.m #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00390000016607.b
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b.m #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00390000016607.b
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b.m #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00390000016607.b
Monodontidae	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028.w.a #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b.m #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00950000183109.c.a.a.m.b.d	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36
Beluga whale	MODERN SPECIES	99	BOLA1 (ENSDLEG00000010185) #9	SV2A (ENSDLEG00000010159) #10	SF3B4 (ENSDLEG00000010135) #11	MTMR11 (ENSDLEG00000010078) #12	OTUD7B (ENSDLEG00000010038) #13	ENSDLEG00000010020 #14	VPS45 (ENSDLEG00000009999) #14	PLEKHO1 (ENSDLEG00000009972) #15	ANP32E (ENSDLEG00000009954) #16	CA14 (ENSDLEG00000009908) #17	ENSDLEG00000009879	APH1A (ENSDLEG00000009850) #18	ENSDLEG00000009839	CIART (ENSDLEG00000009825) #20	MRPS21 (ENSDLEG00000009817) #21	PRPF3 (ENSDLEG00000009787) #22	RPRD2 (ENSDLEG00000009754) #23	ECM1 (ENSDLEG00000009658) #24	ADAMTSL4 (ENSDLEG00000009315) #26	MCL1 (ENSDLEG00000009251) #27	ENSA (ENSDLEG00000009232) #28	GOLPH3L (ENSDLEG00000009214) #29	CTSS (ENSDLEG00000009183) #31	CTSK (ENSDLEG00000009129) #32	ARNT (ENSDLEG00000008978) #33	ENSDLEG00000008940	SETDB1 (ENSDLEG00000008865) #35	CERS2 (ENSDLEG00000008736) #36	MINDY1 (ENSDLEG00000008706)	PRUNE1 (ENSDLEG00000008668)	BNIPL (ENSDLEG00000008485)
Narwhal	MODERN SPECIES	304	H2AC20 (ENSMMNG00015000583) #7	H2AC21 (ENSMMNG00015000574) #8	BOLA1 (ENSMMNG00015000565) #9	SV2A (ENSMMNG00015000538) #10	SF3B4 (ENSMMNG00015000508) #11	MTMR11 (ENSMMNG00015000420) #12	OTUD7B (ENSMMNG00015000357) #13	ENSMMNG00015000303 #14	PLEKHO1 (ENSMMNG00015000265) #15	ANP32E (ENSMMNG00015000229) #16	CA14 (ENSMMNG00015000189) #17	APH1A (ENSMMNG00015000151) #18	C1orf54 (ENSMMNG00015000118) #19	CIART (ENSMMNG00015000077) #20	MRPS21 (ENSMMNG00015004720) #21	PRPF3 (ENSMMNG00015004709) #22	RPRD2 (ENSMMNG00015004667) #23	TARS2 (ENSMMNG00015004626) #24	ECM1 (ENSMMNG00015004604) #25	ADAMTSL4 (ENSMMNG00015004588) #26	MCL1 (ENSMMNG00015004577) #27	ENSA (ENSMMNG00015004565) #28	GOLPH3L (ENSMMNG00015004555) #29	HORMAD1 (ENSMMNG00015004509) #30	CTSS (ENSMMNG00015004454) #31	CTSK (ENSMMNG00015004429) #32	ARNT (ENSMMNG00015004336) #33	ENSMMNG00015004305	CTXND2 (ENSMMNG00015004301) #34	SETDB1 (ENSMMNG00015004269) #35	CERS2 (ENSMMNG00015004250) #36
Vaquita	MODERN SPECIES		H2BC21 (ENSPSNG00000001199)	H2AC20 (ENSPSNG00000001208) #7	H2AC21 (ENSPSNG00000001218) #8	BOLA1 (ENSPSNG00000001237) #9	SV2A (ENSPSNG00000001263) #10	SF3B4 (ENSPSNG00000001286) #11	MTMR11 (ENSPSNG00000001321) #12	OTUD7B (ENSPSNG00000001389) #13	VPS45 (ENSPSNG00000001453) #14	PLEKHO1 (ENSPSNG00000001496) #15	ANP32E (ENSPSNG00000001573) #16	CA14 (ENSPSNG00000001634) #17	ENSPSNG00000001681 #18	CIART (ENSPSNG00000001759) #20	MRPS21 (ENSPSNG00000001805) #21	PRPF3 (ENSPSNG00000001838) #22	RPRD2 (ENSPSNG00000001899) #23	TARS2 (ENSPSNG00000001970) #24	ECM1 (ENSPSNG00000002059) #25	ADAMTSL4 (ENSPSNG00000002117) #26	MCL1 (ENSPSNG00000002164) #27	ENSPSNG00000002192 #28	GOLPH3L (ENSPSNG00000002225) #29	HORMAD1 (ENSPSNG00000002291) #30	ENSPSNG00000002431	CTSS (ENSPSNG00000002456) #31	ENSPSNG00000002497	CTSK (ENSPSNG00000002537) #32	ARNT (ENSPSNG00000002599) #33	ENSPSNG00000002663	CTXND2 (ENSPSNG00000002678) #34
Dolphin	MODERN SPECIES	1299														CIART (ENSTTRG00000010611) #20	MRPS21 (ENSTTRG00000021389) #21	PRPF3 (ENSTTRG00000010616) #22	RPRD2 (ENSTTRG00000010621) #23	TARS2 (ENSTTRG00000010627) #24	ECM1 (ENSTTRG00000010632) #25
Sperm whale	MODERN SPECIES	15	H2AC20 (ENSPCTG00005011425) #7	H2AC21 (ENSPCTG00005011410) #8	BOLA1 (ENSPCTG00005011392) #9	SV2A (ENSPCTG00005011188) #10	SF3B4 (ENSPCTG00005011142) #11	MTMR11 (ENSPCTG00005010793) #12	OTUD7B (ENSPCTG00005010704) #13	VPS45 (ENSPCTG00005010502) #14	PLEKHO1 (ENSPCTG00005010430) #15	ANP32E (ENSPCTG00005010280) #16	CA14 (ENSPCTG00005010130) #17	APH1A (ENSPCTG00005010018) #18	C4H1orf54 (ENSPCTG00005009937) #19	CIART (ENSPCTG00005009880) #20	MRPS21 (ENSPCTG00005009845) #21	PRPF3 (ENSPCTG00005009677) #22	RPRD2 (ENSPCTG00005009512) #23	ENSPCTG00005009425	CTXND2 (ENSPCTG00005009405) #34	ARNT (ENSPCTG00005009289) #33	CTSK (ENSPCTG00005009239) #32	CTSS (ENSPCTG00005009137) #31	HORMAD1 (ENSPCTG00005008902) #30	GOLPH3L (ENSPCTG00005008868) #29	ENSA (ENSPCTG00005008741) #28	MCL1 (ENSPCTG00005008658) #27	PRUNE1 (ENSPCTG00005008633)	BNIPL (ENSPCTG00005008602)	C1orf56 (ENSPCTG00005008573)	CDC42SE1 (ENSPCTG00005008518)	MLLT11 (ENSPCTG00005020260)
Blue whale	MODERN SPECIES		H2AC20 (ENSBMSG00010003906) #7	H2AC21 (ENSBMSG00010003913) #8	BOLA1 (ENSBMSG00010003920) #9	SV2A (ENSBMSG00010003927) #10	SF3B4 (ENSBMSG00010003943) #11	MTMR11 (ENSBMSG00010003964) #12	OTUD7B (ENSBMSG00010004006) #13	VPS45 (ENSBMSG00010013898) #14	PLEKHO1 (ENSBMSG00010013986) #15	ANP32E (ENSBMSG00010014047) #16	CA14 (ENSBMSG00010014191) #17	ENSBMSG00010014245 #18	C1orf54 (ENSBMSG00010014318) #19	CIART (ENSBMSG00010014384) #20	MRPS21 (ENSBMSG00010014420) #21	PRPF3 (ENSBMSG00010014445) #22	RPRD2 (ENSBMSG00010014508) #23	TARS2 (ENSBMSG00010014680) #24	ECM1 (ENSBMSG00010014903) #25	ENSBMSG00010014950	ADAMTSL4 (ENSBMSG00010014975) #26	ENSBMSG00010015010 #27	ENSBMSG00010015076 #28	GOLPH3L (ENSBMSG00010015147) #29	HORMAD1 (ENSBMSG00010015193) #30	CTSS (ENSBMSG00010015415) #31	ENSBMSG00010015501	CTSK (ENSBMSG00010015531) #32	ARNT (ENSBMSG00010015560) #33	CTXND2 (ENSBMSG00010015619) #34	SETDB1 (ENSBMSG00010015648) #35
Pecora	ANCESTRAL SPECIES	2	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Yarkand deer	MODERN SPECIES	12	H2AC21 (ENSCHYG00000015023) #8	BOLA1 (ENSCHYG00000014998) #9	SV2A (ENSCHYG00000014801) #10	ENSCHYG00000014732 #11	MTMR11 (ENSCHYG00000014428) #12	ENSCHYG00000014343	OTUD7B (ENSCHYG00000014204) #13	VPS45 (ENSCHYG00000013592) #14	ENSCHYG00000013481 #15	ANP32E (ENSCHYG00000012932) #16	CA14 (ENSCHYG00000012847) #17	APH1A (ENSCHYG00000012752) #18	C1orf54 (ENSCHYG00000012611) #19	CIART (ENSCHYG00000012538) #20	ENSCHYG00000012484 #21	PRPF3 (ENSCHYG00000012362) #22	RPRD2 (ENSCHYG00000012167) #23	TARS2 (ENSCHYG00000011458) #24	ECM1 (ENSCHYG00000011225) #25	ADAMTSL4 (ENSCHYG00000010890) #26	MCL1 (ENSCHYG00000010763) #27	ENSCHYG00000010464 #28	GOLPH3L (ENSCHYG00000010384) #29	HORMAD1 (ENSCHYG00000010140) #30	CTSS (ENSCHYG00000009944) #31	CTSK (ENSCHYG00000009848) #32	ARNT (ENSCHYG00000009373) #33	CTXND2 (ENSCHYG00000009233) #34	SETDB1 (ENSCHYG00000008840) #35	CERS2 (ENSCHYG00000008620) #36	ANXA9 (ENSCHYG00000008588) #37
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000154555.a.a.b	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36
Bovidae	ANCESTRAL SPECIES	1	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.i #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000154555.a.a.b	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36
Bovinae	ANCESTRAL SPECIES	1	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.i #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000154555.a.a.b	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36
Bos	ANCESTRAL SPECIES		ENSGT01100000263575.B.u	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.i #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT01100000263480.a.a.b.a.b.b.b.b.b	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000154555.a.a.b	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35
Bos_b	ANCESTRAL SPECIES	1	ENSGT00940000156302	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.i #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT01100000263480.a.a.b.a.b.b.b.b.b	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b.o #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000154555.a.a.b	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35
Hybrid Bos Indicus	MODERN SPECIES	22	H3-7 (ENSBIXG00005025404)	ENSBIXG00005004318	H2AC20 (ENSBIXG00005025423) #7	ENSBIXG00005025435 #9	SV2A (ENSBIXG00005025476) #10	ENSBIXG00005004342 #11	MTMR11 (ENSBIXG00005004349) #12	OTUD7B (ENSBIXG00005025620) #13	VPS45 (ENSBIXG00005025887) #14	PLEKHO1 (ENSBIXG00005025976) #15	ENSBIXG00005006696 #16	CA14 (ENSBIXG00005004451) #17	APH1A (ENSBIXG00005026181) #18	CIART (ENSBIXG00005026269) #20	MRPS21 (ENSBIXG00005004483) #21	PRPF3 (ENSBIXG00005026388) #22	ENSBIXG00005026407	RPRD2 (ENSBIXG00005004524) #23	TARS2 (ENSBIXG00005007645) #24	ADAMTSL4 (ENSBIXG00005026752) #26	ENSBIXG00005026789 #27	ENSA (ENSBIXG00005026915) #28	GOLPH3L (ENSBIXG00005004612) #29	HORMAD1 (ENSBIXG00005027115) #30	ENSBIXG00005027168	CTSK (ENSBIXG00005027189) #32	ARNT (ENSBIXG00005006942) #33	CTXND2 (ENSBIXG00005027316) #34	SETDB1 (ENSBIXG00005027385) #35	CERS2 (ENSBIXG00005027450) #36	ANXA9 (ENSBIXG00005007589) #37
Cow	MODERN SPECIES	22	H2AC21 (ENSBTAG00000032456) #8	H2AC20 (ENSBTAG00000040098)	BOLA1 (ENSBTAG00000006050) #9	SV2A (ENSBTAG00000001599) #10	SF3B4 (ENSBTAG00000012495) #11	MTMR11 (ENSBTAG00000012496) #12	OTUD7B (ENSBTAG00000001586) #13	VPS45 (ENSBTAG00000020635) #14	PLEKHO1 (ENSBTAG00000004852) #15	ANP32E (ENSBTAG00000016730) #16	CA14 (ENSBTAG00000021481) #17	APH1A (ENSBTAG00000021482) #18	C3H1orf54 (ENSBTAG00000021485) #19	CIART (ENSBTAG00000021487) #20	MRPS21 (ENSBTAG00000024378) #21	PRPF3 (ENSBTAG00000013946) #22	RPRD2 (ENSBTAG00000014984) #23	TARS2 (ENSBTAG00000003799) #24	ECM1 (ENSBTAG00000003806) #25	ADAMTSL4 (ENSBTAG00000003604) #26	MCL1 (ENSBTAG00000015154) #27	ENSA (ENSBTAG00000007123) #28	GOLPH3L (ENSBTAG00000020357) #29	HORMAD1 (ENSBTAG00000002724) #30	CTSS (ENSBTAG00000017135) #31	ENSBTAG00000050340	CTSK (ENSBTAG00000021035) #32	ARNT (ENSBTAG00000021037) #33	SETDB1 (ENSBTAG00000000098) #35	CERS2 (ENSBTAG00000000099) #36	ANXA9 (ENSBTAG00000015304) #37
Bos_a	ANCESTRAL SPECIES	47	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.i #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT01100000263480.a.a.b.a.b.b.b.b.b	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000154555.a.a.b	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35
Domestic yak	MODERN SPECIES	22	H2AC21 (ENSBGRG00000016349) #8	ENSBGRG00000016367	SV2A (ENSBGRG00000016418) #10	ENSBGRG00000016698 #11	MTMR11 (ENSBGRG00000016764) #12	OTUD7B (ENSBGRG00000016856) #13	VPS45 (ENSBGRG00000016926) #14	PLEKHO1 (ENSBGRG00000017135) #15	ENSBGRG00000017198 #16	ENSBGRG00000017224	CA14 (ENSBGRG00000000220) #17	APH1A (ENSBGRG00000000249) #18	C1orf54 (ENSBGRG00000000272) #19	CIART (ENSBGRG00000000285) #20	MRPS21 (ENSBGRG00000000322) #21	PRPF3 (ENSBGRG00000000360) #22	ENSBGRG00000000401	RPRD2 (ENSBGRG00000000422) #23	ENSBGRG00000000495	TARS2 (ENSBGRG00000000557) #24	ECM1 (ENSBGRG00000000897) #25	ADAMTSL4 (ENSBGRG00000000934) #26	MCL1 (ENSBGRG00000000962) #27	ENSA (ENSBGRG00000001008) #28	ENSBGRG00000001073 #29	HORMAD1 (ENSBGRG00000001109) #30	ENSBGRG00000001219	ENSBGRG00000001228	CTSK (ENSBGRG00000001240) #32	ARNT (ENSBGRG00000001283) #33	CTXND2 (ENSBGRG00000001358) #34
Wild yak	MODERN SPECIES	688	ENSBMUG00000023246 ##8	H2AC21 (ENSBMUG00000023258) #8	BOLA1 (ENSBMUG00000023276) #9	SV2A (ENSBMUG00000023283) #10	ENSBMUG00000023291 #11	MTMR11 (ENSBMUG00000023303) #12	OTUD7B (ENSBMUG00000023313) #13	VPS45 (ENSBMUG00000023335) #14	PLEKHO1 (ENSBMUG00000023366) #15	ENSBMUG00000023376 #16	CA14 (ENSBMUG00000023394) #17	APH1A (ENSBMUG00000023411) #18	C1orf54 (ENSBMUG00000023423) #19	CIART (ENSBMUG00000023439) #20	MRPS21 (ENSBMUG00000023447) #21	PRPF3 (ENSBMUG00000023465) #22	RPRD2 (ENSBMUG00000023488) #23	TARS2 (ENSBMUG00000023540) #24	ECM1 (ENSBMUG00000023627) #25	ADAMTSL4 (ENSBMUG00000023675) #26	MCL1 (ENSBMUG00000023701) #27	ENSA (ENSBMUG00000023727) #28	GOLPH3L (ENSBMUG00000023736) #29	HORMAD1 (ENSBMUG00000023788) #30	CTSS (ENSBMUG00000023817) #31	ENSBMUG00000023823	CTSK (ENSBMUG00000023829) #32	ARNT (ENSBMUG00000023892) #33	CTXND2 (ENSBMUG00000023928) #34	SETDB1 (ENSBMUG00000023958) #35	CERS2 (ENSBMUG00000023975) #36
American bison	MODERN SPECIES	3032	H2AC21 (ENSBBBG00000023276) #8	ENSBBBG00000023283 #9	ENSBBBG00000023289 #9	SV2A (ENSBBBG00000023321) #10	ENSBBBG00000006102 #11	MTMR11 (ENSBBBG00000023347) #12	OTUD7B (ENSBBBG00000023362) #13	VPS45 (ENSBBBG00000023405) #14	PLEKHO1 (ENSBBBG00000023413) #15	ENSBBBG00000023424 #16	CA14 (ENSBBBG00000023456) #17	APH1A (ENSBBBG00000023500) #18	C1orf54 (ENSBBBG00000008854) #19	CIART (ENSBBBG00000023556) #20	MRPS21 (ENSBBBG00000023564) #21	PRPF3 (ENSBBBG00000023595) #22	RPRD2 (ENSBBBG00000023635) #23	TARS2 (ENSBBBG00000023752) #24	ECM1 (ENSBBBG00000023801) #25	ADAMTSL4 (ENSBBBG00000008423) #26	MCL1 (ENSBBBG00000023859) #27	ENSA (ENSBBBG00000023921) #28	ENSBBBG00000023935 #29	HORMAD1 (ENSBBBG00000024026) #30	CTSS (ENSBBBG00000024064) #31	ENSBBBG00000006254	CTSK (ENSBBBG00000006256) #32	ARNT (ENSBBBG00000024242) #33	CTXND2 (ENSBBBG00000006318) #34	SETDB1 (ENSBBBG00000006339) #35	CERS2 (ENSBBBG00000006357) #36
Caprinae	ANCESTRAL SPECIES	2	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.i #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000003316.d.g.a.b.a.a	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000154555.a.a.b	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36
Goat	MODERN SPECIES	22	H2BC21 (ENSCHIG00000012955)	H2AC20 (ENSCHIG00000010392) #7	H2AC21 (ENSCHIG00000006209) #8	BOLA1 (ENSCHIG00000023087) #9	SV2A (ENSCHIG00000017231) #10	ENSCHIG00000025663 #11	MTMR11 (ENSCHIG00000021928) #12	OTUD7B (ENSCHIG00000020643) #13	VPS45 (ENSCHIG00000010595) #14	PLEKHO1 (ENSCHIG00000022413) #15	ANP32E (ENSCHIG00000002759) #16	CA14 (ENSCHIG00000024032) #17	APH1A (ENSCHIG00000015526) #18	CIART (ENSCHIG00000001297) #20	MRPS21 (ENSCHIG00000021516) #21	PRPF3 (ENSCHIG00000015434) #22	RPRD2 (ENSCHIG00000023733) #23	TARS2 (ENSCHIG00000018559) #24	ECM1 (ENSCHIG00000010881) #25	ENSCHIG00000025006	ENSCHIG00000011166	ADAMTSL4 (ENSCHIG00000024595) #26	MCL1 (ENSCHIG00000027012) #27	ENSA (ENSCHIG00000011483) #28	ENSCHIG00000017930 #29	ENSCHIG00000006760	HORMAD1 (ENSCHIG00000010871) #30	CTSS (ENSCHIG00000022768) #31	ENSCHIG00000012927	CTSK (ENSCHIG00000011574) #32	ARNT (ENSCHIG00000012451) #33
Rambouillet Sheep	MODERN SPECIES		HIST2H2AC (ENSOARG00020006891) #7	HIST2H2AB (ENSOARG00020006921) #8	BOLA1 (ENSOARG00020006951) #9	SV2A (ENSOARG00020007009) #10	SF3B4 (ENSOARG00020007183) #11	MTMR11 (ENSOARG00020007236) #12	OTUD7B (ENSOARG00020007348) #13	VPS45 (ENSOARG00020007445) #14	PLEKHO1 (ENSOARG00020007594) #15	ENSOARG00020007614 #16	CA14 (ENSOARG00020007644) #17	APH1A (ENSOARG00020007706) #18	C1orf54 (ENSOARG00020007824) #19	CIART (ENSOARG00020007852) #20	MRPS21 (ENSOARG00020007924) #21	PRPF3 (ENSOARG00020007961) #22	RPRD2 (ENSOARG00020008088) #23	TARS2 (ENSOARG00020008324) #24	ECM1 (ENSOARG00020008539) #25	ADAMTSL4 (ENSOARG00020008616) #26	MCL1 (ENSOARG00020008725) #27	ENSA (ENSOARG00020008758) #28	GOLPH3L (ENSOARG00020008878) #29	ENSOARG00020008922	HORMAD1 (ENSOARG00020008996) #30	CTSS (ENSOARG00020009546) #31	ENSOARG00020009638	CTSK (ENSOARG00020009669) #32	ARNT (ENSOARG00020009727) #33	ENSOARG00020011070	CTXND2 (ENSOARG00020011105) #34
Siberian musk deer	MODERN SPECIES	247	H2AC20 (ENSMMSG00000021185) #7	H2AC21 (ENSMMSG00000021172) #8	BOLA1 (ENSMMSG00000021162) #9	SV2A (ENSMMSG00000021080) #10	SF3B4 (ENSMMSG00000021043) #11	MTMR11 (ENSMMSG00000020972) #12	OTUD7B (ENSMMSG00000020949) #13	VPS45 (ENSMMSG00000020801) #14	PLEKHO1 (ENSMMSG00000020759) #15	ANP32E (ENSMMSG00000020532) #16	CA14 (ENSMMSG00000020490) #17	APH1A (ENSMMSG00000020404) #18	C1orf54 (ENSMMSG00000020377) #19	CIART (ENSMMSG00000020350) #20	MRPS21 (ENSMMSG00000020328) #21	PRPF3 (ENSMMSG00000020222) #22	RPRD2 (ENSMMSG00000020110) #23	TARS2 (ENSMMSG00000019987) #24	ECM1 (ENSMMSG00000019915) #25	ADAMTSL4 (ENSMMSG00000019809) #26	MCL1 (ENSMMSG00000019746) #27	ENSA (ENSMMSG00000019666) #28	ENSMMSG00000019621	ENSMMSG00000019604 #29	HORMAD1 (ENSMMSG00000019531) #30	CTSS (ENSMMSG00000019442) #31	ENSMMSG00000019418	CTSK (ENSMMSG00000019381) #32	ARNT (ENSMMSG00000019310) #33	CTXND2 (ENSMMSG00000019290) #34	SETDB1 (ENSMMSG00000019191) #35
Camelidae	ANCESTRAL SPECIES	6	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37	ENSGT00390000016607.b
Arabian camel	MODERN SPECIES	13	H2AC20 (ENSCDRG00005015569) #7	H2AC21 (ENSCDRG00005015577) #8	BOLA1 (ENSCDRG00005015588) #9	SV2A (ENSCDRG00005015609) #10	SF3B4 (ENSCDRG00005015698) #11	MTMR11 (ENSCDRG00005015753) #12	OTUD7B (ENSCDRG00005015982) #13	VPS45 (ENSCDRG00005016029) #14	PLEKHO1 (ENSCDRG00005016174) #15	ANP32E (ENSCDRG00005016234) #16	CA14 (ENSCDRG00005016386) #17	APH1A (ENSCDRG00005016465) #18	ENSCDRG00005016574 #19	CIART (ENSCDRG00005016658) #20	ENSCDRG00005016696 #21	PRPF3 (ENSCDRG00005016744) #22	RPRD2 (ENSCDRG00005016821) #23	TARS2 (ENSCDRG00005017096) #24	ECM1 (ENSCDRG00005017209) #25	ADAMTSL4 (ENSCDRG00005017304) #26	MCL1 (ENSCDRG00005017360) #27	ENSA (ENSCDRG00005017421) #28	GOLPH3L (ENSCDRG00005017458) #29	HORMAD1 (ENSCDRG00005017527) #30	CTSS (ENSCDRG00005017707) #31	CTSK (ENSCDRG00005017757) #32	ARNT (ENSCDRG00005017808) #33	SETDB1 (ENSCDRG00005018003) #35	CERS2 (ENSCDRG00005018124) #36	ANXA9 (ENSCDRG00005018156) #37	MINDY1 (ENSCDRG00005018219)
Alpaca	MODERN SPECIES	2206								VPS45 (ENSVPAG00000005416) #14	PLEKHO1 (ENSVPAG00000005419) #15	ANP32E (ENSVPAG00000005420) #16	CA14 (ENSVPAG00000005421) #17	ENSVPAG00000005423 #19	CIART (ENSVPAG00000005424) #20	MRPS21 (ENSVPAG00000015525) #21	ENSVPAG00000015489	PRPF3 (ENSVPAG00000005425) #22	RPRD2 (ENSVPAG00000005426) #23	TARS2 (ENSVPAG00000005427) #24	ENSVPAG00000005428	MCL1 (ENSVPAG00000005430) #27	ENSA (ENSVPAG00000005431) #28	GOLPH3L (ENSVPAG00000005432) #29	HORMAD1 (ENSVPAG00000005435) #30	CTSS (ENSVPAG00000005436) #31	CTSK (ENSVPAG00000005437) #32	ARNT (ENSVPAG00000005439) #33	SETDB1 (ENSVPAG00000005440) #35
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Carnivora	ANCESTRAL SPECIES	1	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Caniformia	ANCESTRAL SPECIES	31	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Caniformia_b	ANCESTRAL SPECIES	35	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37	ENSGT00390000016607.b
Ursidae	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.a.b #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37	ENSGT00390000016607.b
Ursus	ANCESTRAL SPECIES	18	ENSGT01100000263575.A	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.a.b #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00950000186073	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
American black bear	MODERN SPECIES	6516										CA14 (ENSUAMG00000009329) #17	APH1A (ENSUAMG00000009333) #18	C1orf54 (ENSUAMG00000009336) #19	CIART (ENSUAMG00000009337) #20	MRPS21 (ENSUAMG00000009340) #21	ENSUAMG00000009343	PRPF3 (ENSUAMG00000009345) #22	ENSUAMG00000009349
Polar bear	MODERN SPECIES	193	ENSUMAG00000003822 ##8	H2AC21 (ENSUMAG00000003816) #8	SV2A (ENSUMAG00000003804) #10	SF3B4 (ENSUMAG00000003802) #11	MTMR11 (ENSUMAG00000003794) #12	OTUD7B (ENSUMAG00000003786) #13	VPS45 (ENSUMAG00000003781) #14	PLEKHO1 (ENSUMAG00000003760) #15	ANP32E (ENSUMAG00000003756) #16	ENSUMAG00000003753	CA14 (ENSUMAG00000003751) #17	APH1A (ENSUMAG00000003746) #18	C1orf54 (ENSUMAG00000003742) #19	CIART (ENSUMAG00000003740) #20	MRPS21 (ENSUMAG00000003735) #21	PRPF3 (ENSUMAG00000003720) #22	RPRD2 (ENSUMAG00000003712) #23	TARS2 (ENSUMAG00000003705) #24	ECM1 (ENSUMAG00000003701) #25	ADAMTSL4 (ENSUMAG00000003512) #26	ENSA (ENSUMAG00000003476) #28	GOLPH3L (ENSUMAG00000003469) #29	HORMAD1 (ENSUMAG00000003454) #30	CTSS (ENSUMAG00000003442) #31	ENSUMAG00000003430	CTSK (ENSUMAG00000003426) #32	ARNT (ENSUMAG00000003392) #33	SETDB1 (ENSUMAG00000003141) #35	CERS2 (ENSUMAG00000003094) #36	ANXA9 (ENSUMAG00000003084) #37	MINDY1 (ENSUMAG00000003075)
Giant Panda	MODERN SPECIES	11	H2AC20 (ENSAMEG00000030590) #7	H2AC21 (ENSAMEG00000030369) #8	BOLA1 (ENSAMEG00000018625) #9	SV2A (ENSAMEG00000010085) #10	SF3B4 (ENSAMEG00000010073) #11	MTMR11 (ENSAMEG00000010059) #12	OTUD7B (ENSAMEG00000010043) #13	VPS45 (ENSAMEG00000001841) #14	PLEKHO1 (ENSAMEG00000001832) #15	ANP32E (ENSAMEG00000001813) #16	CA14 (ENSAMEG00000001775) #17	APH1A (ENSAMEG00000001729) #18	C1orf54 (ENSAMEG00000001725) #19	CIART (ENSAMEG00000001706) #20	MRPS21 (ENSAMEG00000001703) #21	PRPF3 (ENSAMEG00000001630) #22	RPRD2 (ENSAMEG00000001598) #23	TARS2 (ENSAMEG00000001547) #24	ECM1 (ENSAMEG00000001502) #25	ADAMTSL4 (ENSAMEG00000001424) #26	MCL1 (ENSAMEG00000001399) #27	ENSA (ENSAMEG00000001375) #28	GOLPH3L (ENSAMEG00000030641) #29	HORMAD1 (ENSAMEG00000001321) #30	ENSAMEG00000001264 #31	ARNT (ENSAMEG00000001200) #33	ENSAMEG00000011643	SETDB1 (ENSAMEG00000001160) #35	CERS2 (ENSAMEG00000001115) #36	ANXA9 (ENSAMEG00000001101) #37	MINDY1 (ENSAMEG00000001070)
Mustelinae	ANCESTRAL SPECIES	81	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37	ENSGT00390000016607.b
American mink	MODERN SPECIES	316											CA14 (ENSNVIG00000017080) #17	APH1A (ENSNVIG00000017021) #18	C1orf54 (ENSNVIG00000016999) #19	ENSNVIG00000016976 #20	MRPS21 (ENSNVIG00000016967) #21	PRPF3 (ENSNVIG00000016938) #22	RPRD2 (ENSNVIG00000016878) #23	TARS2 (ENSNVIG00000016668) #24	ECM1 (ENSNVIG00000016576) #25	ADAMTSL4 (ENSNVIG00000016514) #26	MCL1 (ENSNVIG00000016500) #27	ENSA (ENSNVIG00000016441) #28	GLP3L (ENSNVIG00000016426) #29	HORMAD1 (ENSNVIG00000016390) #30	CTSS (ENSNVIG00000016354) #31	CATK (ENSNVIG00000016339) #32	ARNT (ENSNVIG00000016210) #33	ENSNVIG00000016187	CTXND2 (ENSNVIG00000016170) #34	SETDB1 (ENSNVIG00000016086) #35	CERS2 (ENSNVIG00000016039) #36
Ferret	MODERN SPECIES	398	H2BC21 (ENSMPUG00000018424)	H2AC20 (ENSMPUG00000018423) #7	H2AC21 (ENSMPUG00000018422) #8	SV2A (ENSMPUG00000005578) #10	SF3B4 (ENSMPUG00000005563) #11	MTMR11 (ENSMPUG00000005535) #12	OTUD7B (ENSMPUG00000005404) #13	VPS45 (ENSMPUG00000005390) #14	PLEKHO1 (ENSMPUG00000005354) #15	ANP32E (ENSMPUG00000005343) #16	CA14 (ENSMPUG00000005329) #17	C1orf54 (ENSMPUG00000005317) #19	APH1A (ENSMPUG00000005237) #18	CIART (ENSMPUG00000005224) #20	MRPS21 (ENSMPUG00000005221) #21	PRPF3 (ENSMPUG00000005080) #22	RPRD2 (ENSMPUG00000005032) #23	TARS2 (ENSMPUG00000004795) #24	ECM1 (ENSMPUG00000004712) #25	ADAMTSL4 (ENSMPUG00000004691) #26	MCL1 (ENSMPUG00000004683) #27	ENSA (ENSMPUG00000004647) #28	GOLPH3L (ENSMPUG00000004608) #29	HORMAD1 (ENSMPUG00000004562) #30	CTSS (ENSMPUG00000004552) #31	ENSMPUG00000004471	CTSK (ENSMPUG00000004373) #32	ARNT (ENSMPUG00000004365) #33	SETDB1 (ENSMPUG00000004298) #35	CERS2 (ENSMPUG00000004292) #36	ANXA9 (ENSMPUG00000004217) #37
Canidae	ANCESTRAL SPECIES	18	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.k #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Canis_lupus	ANCESTRAL SPECIES	10	ENSGT00940000156302	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.k #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Dingo	MODERN SPECIES	223	H2AC21 (ENSCAFG00020019793) #8	ENSCAFG00020019789 ##8	BOLA1 (ENSCAFG00020019784) #9	SV2A (ENSCAFG00020019781) #10	SF3B4 (ENSCAFG00020019775) #11	MTMR11 (ENSCAFG00020019770) #12	OTUD7B (ENSCAFG00020019694) #13	VPS45 (ENSCAFG00020019689) #14	PLEKHO1 (ENSCAFG00020019684) #15	ENSCAFG00020019677 #16	CA14 (ENSCAFG00020019676) #17	APH1A (ENSCAFG00020019671) #18	C1orf54 (ENSCAFG00020019667) #19	CIART (ENSCAFG00020019665) #20	MRPS21 (ENSCAFG00020019663) #21	PRPF3 (ENSCAFG00020019653) #22	RPRD2 (ENSCAFG00020019619) #23	TARS2 (ENSCAFG00020019615) #24	ECM1 (ENSCAFG00020019611) #25	ADAMTSL4 (ENSCAFG00020019552) #26	MCL1 (ENSCAFG00020019541) #27	ENSA (ENSCAFG00020019539) #28	GOLPH3L (ENSCAFG00020019538) #29	HORMAD1 (ENSCAFG00020019532) #30	CTSS (ENSCAFG00020019528) #31	CTSK (ENSCAFG00020019521) #32	ARNT (ENSCAFG00020014304) #33	SETDB1 (ENSCAFG00020013596) #35	CERS2 (ENSCAFG00020013567) #36	ANXA9 (ENSCAFG00020013531) #37	MINDY1 (ENSCAFG00020013527)
Dog	MODERN SPECIES	8	ENSCAFG00845011880	ENSCAFG00845011998 #8	ENSCAFG00845012017 #9	SV2A (ENSCAFG00845012074) #10	SF3B4 (ENSCAFG00845012146) #11	MTMR11 (ENSCAFG00845012198) #12	OTUD7B (ENSCAFG00845012281) #13	VPS45 (ENSCAFG00845012364) #14	PLEKHO1 (ENSCAFG00845012601) #15	ANP32E (ENSCAFG00845012804) #16	CA14 (ENSCAFG00845016587) #17	APH1A (ENSCAFG00845016683) #18	C1orf54 (ENSCAFG00845016794) #19	CIART (ENSCAFG00845016855) #20	MRPS21 (ENSCAFG00845016904) #21	PRPF3 (ENSCAFG00845017034) #22	RPRD2 (ENSCAFG00845017196) #23	TARS2 (ENSCAFG00845017490) #24	ECM1 (ENSCAFG00845018089) #25	ADAMTSL4 (ENSCAFG00845018385) #26	MCL1 (ENSCAFG00845018496) #27	ENSA (ENSCAFG00845018577) #28	GOLPH3L (ENSCAFG00845018671) #29	HORMAD1 (ENSCAFG00845018896) #30	CTSS (ENSCAFG00845019241) #31	CTSK (ENSCAFG00845019461) #32	ARNT (ENSCAFG00845019671) #33	CTXND2 (ENSCAFG00845020148) #34	SETDB1 (ENSCAFG00845020216) #35	CERS2 (ENSCAFG00845020459) #36	ANXA9 (ENSCAFG00845020549) #37
Red fox	MODERN SPECIES	176	H2BC21 (ENSVVUG00000007671)	H2AC20 (ENSVVUG00000007707) #7	H2AC21 (ENSVVUG00000007714) #8	BOLA1 (ENSVVUG00000007718) #9	SV2A (ENSVVUG00000007726) #10	ENSVVUG00000007732 #11	MTMR11 (ENSVVUG00000007745) #12	OTUD7B (ENSVVUG00000007773) #13	VPS45 (ENSVVUG00000007786) #14	PLEKHO1 (ENSVVUG00000007828) #15	ENSVVUG00000007839 #16	CA14 (ENSVVUG00000007843) #17	APH1A (ENSVVUG00000007850) #18	CIART (ENSVVUG00000007857) #20	MRPS21 (ENSVVUG00000007865) #21	PRPF3 (ENSVVUG00000007933) #22	RPRD2 (ENSVVUG00000009075) #23	TARS2 (ENSVVUG00000009226) #24	ECM1 (ENSVVUG00000011492) #25	ENSVVUG00000011504	ADAMTSL4 (ENSVVUG00000011516) #26	MCL1 (ENSVVUG00000011532) #27	ENSA (ENSVVUG00000011538) #28	ENSVVUG00000011548 #29	CTSS (ENSVVUG00000011558) #31	CTSK (ENSVVUG00000011566) #32	ARNT (ENSVVUG00000011582) #33	ENSVVUG00000011618	SETDB1 (ENSVVUG00000011637) #35	CERS2 (ENSVVUG00000011653) #36	ANXA9 (ENSVVUG00000011665) #37
Felidae	ANCESTRAL SPECIES	10	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.n #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00390000009588.fb.b	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36
Panthera	ANCESTRAL SPECIES	40	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.n.a #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00390000009588.fb.b	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36
Tiger	MODERN SPECIES	275	ENSPTIG00000004585	H2AC21 (ENSPTIG00000004596) #8	BOLA1 (ENSPTIG00000004599) #9	SV2A (ENSPTIG00000013557) #10	SF3B4 (ENSPTIG00000014530) #11	MTMR11 (ENSPTIG00000014650) #12	OTUD7B (ENSPTIG00000017376) #13	VPS45 (ENSPTIG00000018151) #14	PLEKHO1 (ENSPTIG00000018948) #15	ANP32E (ENSPTIG00000019676) #16	CA14 (ENSPTIG00000020798) #17	APH1A (ENSPTIG00000021060) #18	C1orf54 (ENSPTIG00000021455) #19	CIART (ENSPTIG00000000357) #20	ENSPTIG00000003850 #21	PRPF3 (ENSPTIG00000005516) #22	RPRD2 (ENSPTIG00000006304) #23	TARS2 (ENSPTIG00000008079) #24	ECM1 (ENSPTIG00000012717) #25	ADAMTSL4 (ENSPTIG00000015181) #26	MCL1 (ENSPTIG00000016268) #27	ENSA (ENSPTIG00000016622) #28	GOLPH3L (ENSPTIG00000019004) #29	HORMAD1 (ENSPTIG00000019960) #30	CTSS (ENSPTIG00000001310) #31	CTSK (ENSPTIG00000004636) #32	ARNT (ENSPTIG00000006152) #33	ENSPTIG00000012578	CTXND2 (ENSPTIG00000005780) #34	SETDB1 (ENSPTIG00000014233) #35	CERS2 (ENSPTIG00000018998) #36
Panthera_a	ANCESTRAL SPECIES	38	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.n.a #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00390000009588.fb.b	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36
leopard	MODERN SPECIES	149	ENSPPRG00000016865 #7	H2AC21 (ENSPPRG00000016850) #8	BOLA1 (ENSPPRG00000016802) #9	SV2A (ENSPPRG00000007971) #10	SF3B4 (ENSPPRG00000007384) #11	MTMR11 (ENSPPRG00000007153) #12	OTUD7B (ENSPPRG00000005622) #13	VPS45 (ENSPPRG00000005479) #14	PLEKHO1 (ENSPPRG00000004031) #15	ANP32E (ENSPPRG00000003660) #16	CA14 (ENSPPRG00000002165) #17	APH1A (ENSPPRG00000002030) #18	C1orf54 (ENSPPRG00000001580) #19	CIART (ENSPPRG00000001098) #20	ENSPPRG00000000903 #21	PRPF3 (ENSPPRG00000000731) #22	ENSPPRG00000000561	RPRD2 (ENSPPRG00000000487) #23	TARS2 (ENSPPRG00000019975) #24	ECM1 (ENSPPRG00000013966) #25	ADAMTSL4 (ENSPPRG00000012710) #26	MCL1 (ENSPPRG00000011968) #27	ENSPPRG00000011393 #28	GOLPH3L (ENSPPRG00000010135) #29	HORMAD1 (ENSPPRG00000010018) #30	CTSS (ENSPPRG00000008620) #31	CTSK (ENSPPRG00000008091) #32	ARNT (ENSPPRG00000007894) #33	ENSPPRG00000006841	CTXND2 (ENSPPRG00000015884) #34	SETDB1 (ENSPPRG00000005462) #35
lion	MODERN SPECIES	8	H2AC20 (ENSPLOG00000017459) #7	H2AC21 (ENSPLOG00000017476) #8	BOLA1 (ENSPLOG00000017492) #9	SV2A (ENSPLOG00000017521) #10	SF3B4 (ENSPLOG00000017698) #11	MTMR11 (ENSPLOG00000017771) #12	OTUD7B (ENSPLOG00000017898) #13	VPS45 (ENSPLOG00000017939) #14	PLEKHO1 (ENSPLOG00000018167) #15	ANP32E (ENSPLOG00000018252) #16	CA14 (ENSPLOG00000018473) #17	APH1A (ENSPLOG00000018596) #18	C1orf54 (ENSPLOG00000018755) #19	CIART (ENSPLOG00000018806) #20	ENSPLOG00000018890 #21	PRPF3 (ENSPLOG00000018919) #22	RPRD2 (ENSPLOG00000018951) #23	TARS2 (ENSPLOG00000019042) #24	ECM1 (ENSPLOG00000019469) #25	ADAMTSL4 (ENSPLOG00000019514) #26	MCL1 (ENSPLOG00000019623) #27	ENSPLOG00000019678 #28	GOLPH3L (ENSPLOG00000019714) #29	HORMAD1 (ENSPLOG00000019828) #30	CTSK (ENSPLOG00000020110) #32	ARNT (ENSPLOG00000020141) #33	ENSPLOG00000020188	CTXND2 (ENSPLOG00000020213) #34	SETDB1 (ENSPLOG00000020237) #35	CERS2 (ENSPLOG00000020309) #36	ANXA9 (ENSPLOG00000020367) #37
Cat	MODERN SPECIES	239	ENSFCAG00000047792	H2BC19 (ENSFCAG00000044074)	SV2A (ENSFCAG00000010104) #10	ENSFCAG00000051403	SF3B4 (ENSFCAG00000010106) #11	MTMR11 (ENSFCAG00000010108) #12	OTUD7B (ENSFCAG00000010110) #13	VPS45 (ENSFCAG00000010112) #14	PLEKHO1 (ENSFCAG00000035563) #15	ANP32E (ENSFCAG00000022278) #16	APH1A (ENSFCAG00000030589) #18	CA14 (ENSFCAG00000013934) #17	CC1H1orf54 (ENSFCAG00000013939) #19	CIART (ENSFCAG00000013937) #20	ENSFCAG00000034082 #21	PRPF3 (ENSFCAG00000013940) #22	RPRD2 (ENSFCAG00000030083) #23	MCL1 (ENSFCAG00000030278) #27	TARS2 (ENSFCAG00000001702) #24	ECM1 (ENSFCAG00000027224) #25	ADAMTSL4 (ENSFCAG00000000754) #26	ENSA (ENSFCAG00000024290) #28	GOLPH3L (ENSFCAG00000035181) #29	HORMAD1 (ENSFCAG00000025264) #30	CTSS (ENSFCAG00000003642) #31	CTSK (ENSFCAG00000003643) #32	ARNT (ENSFCAG00000003644) #33	ENSFCAG00000035512	SETDB1 (ENSFCAG00000009655) #35	CERS2 (ENSFCAG00000009657) #36	ANXA9 (ENSFCAG00000009658) #37
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Equus	ANCESTRAL SPECIES	3	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Donkey	MODERN SPECIES	17	H2AC21 (ENSEASG00005032093) #8	ENSEASG00005001466 #9	SV2A (ENSEASG00005001472) #10	SF3B4 (ENSEASG00005001477) #11	MTMR11 (ENSEASG00005001485) #12	OTUD7B (ENSEASG00005001503) #13	ENSEASG00005027301 #14	VPS45 (ENSEASG00005001512) #14	PLEKHO1 (ENSEASG00005001526) #15	ANP32E (ENSEASG00005038731) #16	CA14 (ENSEASG00005001536) #17	APH1A (ENSEASG00005035187) #18	C1orf54 (ENSEASG00005025776) #19	CIART (ENSEASG00005001554) #20	MRPS21 (ENSEASG00005001557) #21	PRPF3 (ENSEASG00005001566) #22	RPRD2 (ENSEASG00005001574) #23	TARS2 (ENSEASG00005001587) #24	ECM1 (ENSEASG00005001606) #25	ADAMTSL4 (ENSEASG00005001774) #26	MCL1 (ENSEASG00005002018) #27	ENSA (ENSEASG00005025935) #28	GOLPH3L (ENSEASG00005034481) #29	HORMAD1 (ENSEASG00005002037) #30	CTSS (ENSEASG00005002042) #31	CTSK (ENSEASG00005002046) #32	ARNT (ENSEASG00005002052) #33	CTXND2 (ENSEASG00005023903) #34	SETDB1 (ENSEASG00005002061) #35	CERS2 (ENSEASG00005002064) #36	ANXA9 (ENSEASG00005002066) #37
Horse	MODERN SPECIES	26	ENSECAG00000054279	H2BC20 (ENSECAG00000060054)	H2AC20 (ENSECAG00000049520) #7	BOLA1 (ENSECAG00000034826) #9	SV2A (ENSECAG00000007414) #10	MTMR11 (ENSECAG00000023282) #12	OTUD7B (ENSECAG00000019449) #13	VPS45 (ENSECAG00000013816) #14	PLEKHO1 (ENSECAG00000059570) #15	ENSECAG00000044747	ENSECAG00000057654	ANP32E (ENSECAG00000008718) #16	APH1A (ENSECAG00000012998) #18	CA14 (ENSECAG00000002916) #19	CIART (ENSECAG00000010349) #20	PRPF3 (ENSECAG00000019840) #22	RPRD2 (ENSECAG00000018617) #23	TARS2 (ENSECAG00000014276) #24	ECM1 (ENSECAG00000008545) #25	ADAMTSL4 (ENSECAG00000019154) #26	MCL1 (ENSECAG00000018823) #27	ENSA (ENSECAG00000017165) #28	GOLPH3L (ENSECAG00000016587) #29	HORMAD1 (ENSECAG00000011731) #30	CTSS (ENSECAG00000022438) #31	CTSK (ENSECAG00000019087) #32	ARNT (ENSECAG00000009602) #33	SETDB1 (ENSECAG00000023954) #35	CERS2 (ENSECAG00000018141) #36	MINDY1 (ENSECAG00000009096)	ANXA9 (ENSECAG00000014801) #37
Chiroptera	ANCESTRAL SPECIES	20	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Microchiroptera	ANCESTRAL SPECIES	21	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000164740 #34	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37
Greater horseshoe bat	MODERN SPECIES	14	H2AC21 (ENSRFEG00010019466) #8	ENSRFEG00010019479	BOLA1 (ENSRFEG00010019489) #9	SV2A (ENSRFEG00010019515) #10	SF3B4 (ENSRFEG00010019596) #11	MTMR11 (ENSRFEG00010019669) #12	OTUD7B (ENSRFEG00010019911) #13	VPS45 (ENSRFEG00010019952) #14	PLEKHO1 (ENSRFEG00010020048) #15	ANP32E (ENSRFEG00010020103) #16	CA14 (ENSRFEG00010020216) #17	APH1A (ENSRFEG00010020244) #18	C1orf54 (ENSRFEG00010020321) #19	CIART (ENSRFEG00010020371) #20	ENSRFEG00010020409 #21	PRPF3 (ENSRFEG00010020436) #22	RPRD2 (ENSRFEG00010020482) #23	TARS2 (ENSRFEG00010020572) #24	ECM1 (ENSRFEG00010020676) #25	ADAMTSL4 (ENSRFEG00010020724) #26	MCL1 (ENSRFEG00010020768) #27	ENSA (ENSRFEG00010020814) #28	ENSRFEG00010020865	GOLPH3L (ENSRFEG00010020873) #29	HORMAD1 (ENSRFEG00010020903) #30	CTSS (ENSRFEG00010021017) #31	CTSK (ENSRFEG00010021054) #32	ENSRFEG00010021080	ARNT (ENSRFEG00010021097) #33	CTXND2 (ENSRFEG00010021199) #34	SETDB1 (ENSRFEG00010021209) #35
Microbat	MODERN SPECIES	107																ENSMLUG00000004646 #22
Megabat	MODERN SPECIES	1050										ANP32E (ENSPVAG00000013462) #16	CA14 (ENSPVAG00000013464) #17	APH1A (ENSPVAG00000013466) #18	C1orf54 (ENSPVAG00000013468) #19	CIART (ENSPVAG00000013469) #20	MRPS21 (ENSPVAG00000024222) #21	PRPF3 (ENSPVAG00000013472) #22	RPRD2 (ENSPVAG00000013478) #23
Atlantogenata	ANCESTRAL SPECIES	66	ENSGT01100000263575.B	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37	ENSGT00390000016607.b
Afrotheria	ANCESTRAL SPECIES	76		ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37	ENSGT00390000016607.b
Afrotheria_a	ANCESTRAL SPECIES	75		ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37	ENSGT00390000016607.b
Elephant	MODERN SPECIES	26	ENSLAFG00000031642	H2AC21 (ENSLAFG00000001481) #8	BOLA1 (ENSLAFG00000008527) #9	SV2A (ENSLAFG00000008529) #10	SF3B4 (ENSLAFG00000008531) #11	MTMR11 (ENSLAFG00000008533) #12	OTUD7B (ENSLAFG00000026624) #13	VPS45 (ENSLAFG00000018411) #14	PLEKHO1 (ENSLAFG00000018415) #15	ANP32E (ENSLAFG00000026778) #16	CA14 (ENSLAFG00000004703) #17	APH1A (ENSLAFG00000004705) #18	C1orf54 (ENSLAFG00000022852) #19	CIART (ENSLAFG00000002729) #20	MRPS21 (ENSLAFG00000030348) #21	PRPF3 (ENSLAFG00000004713) #22	RPRD2 (ENSLAFG00000004975) #23	TARS2 (ENSLAFG00000004979) #24	ECM1 (ENSLAFG00000028827) #25	ADAMTSL4 (ENSLAFG00000030426) #26	MCL1 (ENSLAFG00000011260) #27	ENSA (ENSLAFG00000011261) #28	GOLPH3L (ENSLAFG00000031294) #29	HORMAD1 (ENSLAFG00000011265) #30	CTSS (ENSLAFG00000011276) #31	CTSK (ENSLAFG00000011279) #32	ARNT (ENSLAFG00000011282) #33	SETDB1 (ENSLAFG00000004006) #35	CERS2 (ENSLAFG00000028936) #36	ANXA9 (ENSLAFG00000004011) #37	MINDY1 (ENSLAFG00000004012)
Hyrax	MODERN SPECIES	1450																PRPF3 (ENSPCAG00000014908) #22
Tenrec	MODERN SPECIES	5062															CIART (ENSETEG00000019120) #20	PRPF3 (ENSETEG00000019124) #22
Xenarthra	ANCESTRAL SPECIES	107		ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33
Sloth	MODERN SPECIES	1618																PRPF3 (ENSCHOG00000011645) #22
Armadillo	MODERN SPECIES	1834	ENSDNOG00000043400	H2AC21 (ENSDNOG00000037547) #8	BOLA1 (ENSDNOG00000000839) #9	SV2A (ENSDNOG00000030740) #10	ENSDNOG00000048908 #11	MTMR11 (ENSDNOG00000002431) #12	OTUD7B (ENSDNOG00000039147) #13	VPS45 (ENSDNOG00000013685) #14	PLEKHO1 (ENSDNOG00000041988) #15	ANP32E (ENSDNOG00000034773) #16	CA14 (ENSDNOG00000007176) #17	APH1A (ENSDNOG00000007194) #18	ENSDNOG00000030893 #19	CIART (ENSDNOG00000041401) #20	MRPS21 (ENSDNOG00000025657) #21	PRPF3 (ENSDNOG00000005904) #22	RPRD2 (ENSDNOG00000005924) #23	TARS2 (ENSDNOG00000005934) #24	ECM1 (ENSDNOG00000044394) #25	ADAMTSL4 (ENSDNOG00000043483) #26	MCL1 (ENSDNOG00000000061) #27	ENSA (ENSDNOG00000041590) #28	ENSDNOG00000043610	ENSDNOG00000044672	GOLPH3L (ENSDNOG00000000067) #29	CTSS (ENSDNOG00000016628) #31	CTSK (ENSDNOG00000038345) #32	ARNT (ENSDNOG00000005093) #33
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00940000158522	ENSGT00950000183112.b.b	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37	ENSGT00390000016607.b
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00940000158522	ENSGT00950000183112.b.b	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37	ENSGT00390000016607.b
Diprotodontia	ANCESTRAL SPECIES	5	ENSGT01060000248645	ENSGT00940000158522	ENSGT00950000183112.b.b	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37	ENSGT00390000016607.b
Diprotodontia_a	ANCESTRAL SPECIES	6	ENSGT00940000153125.F	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT01100000263506.a.f	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000018360 #20	ENSGT00500000045038.gb #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00940000161835 #37	ENSGT00390000016607.b
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1007	ENSVURG00010015866	ENSVURG00010015862	ENSVURG00010015803	ENSVURG00010015790 #9	ENSVURG00010015766 #10	ENSVURG00010015753 #11	ENSVURG00010015733 #12	ENSVURG00010015716 #13	ENSVURG00010015671 #14	ENSVURG00010015660 #15	ENSVURG00010015651 #16	ENSVURG00010015635 #17	ENSVURG00010015618 #18	ENSVURG00010015603 #20	ENSVURG00010015584 #21	ENSVURG00010015568 #22	ENSVURG00010015284 #23	ENSVURG00010015119 #24	ENSVURG00010015082 #25	ENSVURG00010015042 #26	ENSVURG00010015036 #27	ENSVURG00010015024 #28	ENSVURG00010015007 #29	ENSVURG00010014924 #30	ENSVURG00010014896 #31	ENSVURG00010014884 #32	ENSVURG00010014843 #33	ENSVURG00010014816 #35	ENSVURG00010014801 #36	ENSVURG00010014785 #37	ENSVURG00010014761
Common wonbat	MODERN SPECIES	1007	ENSVURG00010001073	ENSVURG00010001047 #8	ENSVURG00010001021	ENSVURG00010000996 #9	ENSVURG00010000953 #10	ENSVURG00010000937 #11	ENSVURG00010000922 #12	ENSVURG00010000895 #13	ENSVURG00010000870 #14	ENSVURG00010000839 #15	ANP32E (ENSVURG00010000762) #16	ENSVURG00010000731 #17	ENSVURG00010000715 #18	ENSVURG00010000676 #20	ENSVURG00010000650 #21	ENSVURG00010000618 #22	ENSVURG00010000591 #23	ENSVURG00010000553 #24	ENSVURG00010000529 #25	ENSVURG00010000490 #26	ENSVURG00010000461 #27	ENSVURG00010000444 #28	ENSVURG00010000422 #29	ENSVURG00010000357 #30	ENSVURG00010000321 #31	ENSVURG00010000306 #32	ENSVURG00010000270 #33	ENSVURG00010000234 #35	ENSVURG00010000206 #36	ENSVURG00010000188 #37	ENSVURG00010000167
koala	MODERN SPECIES	4	ENSPCIG00000008760	H2AC21 (ENSPCIG00000036441) #8	ENSPCIG00000031608	BOLA1 (ENSPCIG00000008763) #9	SV2A (ENSPCIG00000008764) #10	SF3B4 (ENSPCIG00000008765) #11	MTMR11 (ENSPCIG00000008766) #12	OTUD7B (ENSPCIG00000008768) #13	VPS45 (ENSPCIG00000008774) #14	PLEKHO1 (ENSPCIG00000030649) #15	ENSPCIG00000033433 #16	CA14 (ENSPCIG00000008783) #17	APH1A (ENSPCIG00000008786) #18	CIART (ENSPCIG00000035308) #20	ENSPCIG00000008793 #21	PRPF3 (ENSPCIG00000008795) #22	RPRD2 (ENSPCIG00000008798) #23	TARS2 (ENSPCIG00000008884) #24	ENSPCIG00000008887 #25	ADAMTSL4 (ENSPCIG00000008894) #26	MCL1 (ENSPCIG00000008897) #27	ENSA (ENSPCIG00000023585) #28	ENSPCIG00000008899 #29	ENSPCIG00000008916 #32	ARNT (ENSPCIG00000008925) #33	ENSPCIG00000034396	CERS2 (ENSPCIG00000008928) #36	ANXA9 (ENSPCIG00000008929) #37	MINDY1 (ENSPCIG00000008930)	PRUNE1 (ENSPCIG00000007751)	BNIPL (ENSPCIG00000007757)
Wallaby	MODERN SPECIES	2627																PRPF3 (ENSMEUG00000008733) #22
Tasmanian devil	DUPLICATION
Tasmanian devil	MODERN SPECIES	3	ENSSHAG00000030611	ENSSHAG00000022199	ENSSHAG00000026594 #8	ENSSHAG00000003341 #9	SV2A (ENSSHAG00000003476) #10	OTUD7B (ENSSHAG00000028863) #13	VPS45 (ENSSHAG00000006633) #14	PLEKHO1 (ENSSHAG00000026260) #15	ANP32E (ENSSHAG00000021363) #16	CA14 (ENSSHAG00000009010) #17	APH1A (ENSSHAG00000022849) #18	CIART (ENSSHAG00000021296) #20	MRPS21 (ENSSHAG00000029824) #21	RPRD2 (ENSSHAG00000009969) #23	TARS2 (ENSSHAG00000010286) #24	ENSSHAG00000009548 #22	ECM1 (ENSSHAG00000010367) #25	ADAMTSL4 (ENSSHAG00000010707) #26	MCL1 (ENSSHAG00000021636) #27	ENSA (ENSSHAG00000029217) #28	HORMAD1 (ENSSHAG00000011613) #30	CTSS (ENSSHAG00000011950) #31	ARNT (ENSSHAG00000025438) #33	SETDB1 (ENSSHAG00000012701) #35	CERS2 (ENSSHAG00000012811) #36	MINDY1 (ENSSHAG00000013033)	ANXA9 (ENSSHAG00000012884) #37	ENSSHAG00000028099	ENSSHAG00000029597	ENSSHAG00000026643	GABPB2 (ENSSHAG00000030596)
Tasmanian devil	MODERN SPECIES	1	LDHD (ENSSHAG00000010993)	ZNRF1 (ENSSHAG00000030822)	WDR59 (ENSSHAG00000011756)	FA2H (ENSSHAG00000004764)	RFWD3 (ENSSHAG00000005677)	GLG1 (ENSSHAG00000003008)	ENSSHAG00000006095	ENSSHAG00000030566	ENSSHAG00000006713	EXOSC6 (ENSSHAG00000029181)	AARS1 (ENSSHAG00000007347)	ENSSHAG00000008169	ENSSHAG00000020684	ENSSHAG00000007733	ENSSHAG00000028327	ENSSHAG00000024574 #22	ST3GAL2 (ENSSHAG00000028011)	FCSK (ENSSHAG00000000017)	COG4 (ENSSHAG00000001444)	SF3B3 (ENSSHAG00000000372)	ENSSHAG00000032160	VAC14 (ENSSHAG00000005939)	MTSS2 (ENSSHAG00000005429)	HYDIN (ENSSHAG00000007440)	CMTR2 (ENSSHAG00000030558)	ENSSHAG00000020502	ENSSHAG00000022137	ENSSHAG00000011605	SLC38A7 (ENSSHAG00000011773)	ENSSHAG00000011945	CNOT1 (ENSSHAG00000012187)
Opossum	MODERN SPECIES	1	ENSMODG00000043839	ENSMODG00000050604	ENSMODG00000049030	ENSMODG00000044619	SV2A (ENSMODG00000018766) #10	SF3B4 (ENSMODG00000018767) #11	MTMR11 (ENSMODG00000018769) #12	OTUD7B (ENSMODG00000018770) #13	VPS45 (ENSMODG00000018771) #14	ENSMODG00000018772 #15	ENSMODG00000027412 #16	CA14 (ENSMODG00000018776) #17	APH1A (ENSMODG00000018778) #18	ENSMODG00000018781 #20	MRPS21 (ENSMODG00000018783) #21	PRPF3 (ENSMODG00000018774) #22	RPRD2 (ENSMODG00000018786) #23	TARS2 (ENSMODG00000018792) #24	ENSMODG00000018796 #25	MCL1 (ENSMODG00000018801) #27	ADAMTSL4 (ENSMODG00000018799) #26	ENSA (ENSMODG00000018804) #28	GOLPH3L (ENSMODG00000051501) #29	HORMAD1 (ENSMODG00000018807) #30	CTSS (ENSMODG00000018809) #31	CTSK (ENSMODG00000018811) #32	ARNT (ENSMODG00000018814) #33	SETDB1 (ENSMODG00000018821) #35	CERS2 (ENSMODG00000018825) #36	ANXA9 (ENSMODG00000018826) #37	MINDY1 (ENSMODG00000018827)
Platypus	MODERN SPECIES	88	PEX11B (ENSOANG00000040317)	ENSOANG00000043928	ENSOANG00000043050	ENSOANG00000040128	TXNIP (ENSOANG00000041306)	HJV (ENSOANG00000040602)	ENSOANG00000037391 #11	MTMR11 (ENSOANG00000040114) #12	ENSOANG00000003375 #14	PLEKHO1 (ENSOANG00000041629) #15	ENSOANG00000045338 #16	ENSOANG00000039352 #17	APH1A (ENSOANG00000043325) #18	ENSOANG00000038721	MRPS21 (ENSOANG00000050148) #21	PRPF3 (ENSOANG00000036562) #22	ENSOANG00000049931 #23	ENSOANG00000039301 #24	ENSOANG00000042673	ENSA (ENSOANG00000045744) #28	ENSOANG00000041783	ADAMTSL4 (ENSOANG00000042473) #26	ENSOANG00000038772	USF1 (ENSOANG00000048346)	ARHGAP30 (ENSOANG00000048572)	NECTIN4 (ENSOANG00000038612)	KLHDC9 (ENSOANG00000041659)	PFDN2 (ENSOANG00000037978)	DEDD (ENSOANG00000036083)	ENSOANG00000050912	ENSOANG00000044116
Sauria	ANCESTRAL SPECIES	28	ENSGT00950000186203	ENSGT00940000161215	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT01040000240780	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36
Lepidosauria	ANCESTRAL SPECIES	36	ENSGT00950000186203	ENSGT00940000161215	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT00550000074892	ENSGT00940000165572	ENSGT00940000156524	ENSGT00960000189065	ENSGT00530000064050	ENSGT00940000154703	ENSGT00390000017503	ENSGT00940000158734	ENSGT00390000010811	ENSGT00940000160002	ENSGT00390000003488.b
Episquamata	ANCESTRAL SPECIES	17	ENSGT00950000183112.b.b.a	ENSGT00940000161215	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT00550000074892	ENSGT00940000165572	ENSGT00940000156524	ENSGT00960000189065	ENSGT00530000064050	ENSGT00940000154703	ENSGT00390000017503	ENSGT00940000158734	ENSGT00390000010811	ENSGT00940000160002	ENSGT00390000003488.b
Toxicofera	ANCESTRAL SPECIES	27	ENSGT00940000155795	ENSGT00950000183112.b.b.a	ENSGT00950000186203	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT00550000074892	ENSGT00940000165572	ENSGT00940000156524	ENSGT00530000064050	ENSGT00940000154703	ENSGT00390000017503	ENSGT00940000158734	ENSGT00390000010811	ENSGT00940000160002	ENSGT00390000003488.b	ENSGT00940000158641
Elapidae	ANCESTRAL SPECIES	25	ENSGT00950000186203	ENSGT00950000183112.b.b.a	ENSGT00940000161215	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22
Elapidae_a	ANCESTRAL SPECIES	51	ENSGT00950000186203	ENSGT00940000161215	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028.k #14	ENSGT00550000075028.l #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22
Blue-lipped sea krait	MODERN SPECIES	7731										ENSLLTG00000005021 #14	PLEKHO1 (ENSLLTG00000005628) #15	ANP32E (ENSLLTG00000005633) #16	CA14 (ENSLLTG00000005646) #17	CIART (ENSLLTG00000005656) #20	MRPS21 (ENSLLTG00000005663) #21	PRPF3 (ENSLLTG00000005671) #22
Acanthophiinae	ANCESTRAL SPECIES	51	ENSGT00950000183112.b.b.a	ENSGT00950000186203	ENSGT00940000161215	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028.l #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22
Mainland tiger snake	MODERN SPECIES	271	ENSNSUG00000008170	ENSNSUG00000008171	ENSNSUG00000008172	ENSNSUG00000008173	BOLA1 (ENSNSUG00000008174) #9	SV2A (ENSNSUG00000008175) #10	SF3B4 (ENSNSUG00000008240) #11	MTMR11 (ENSNSUG00000008241) #12	OTUD7B (ENSNSUG00000008243) #13	VPS45 (ENSNSUG00000008252) #14	PLEKHO1 (ENSNSUG00000008321) #15	ANP32E (ENSNSUG00000008327) #16	CA14 (ENSNSUG00000008328) #17	CIART (ENSNSUG00000008329) #20	MRPS21 (ENSNSUG00000008330) #21	PRPF3 (ENSNSUG00000008331) #22
Eastern brown snake	MODERN SPECIES	133	ENSPTXG00000009601	ENSPTXG00000009602	ENSPTXG00000009604	BOLA1 (ENSPTXG00000009606) #9	SV2A (ENSPTXG00000009608) #10	SF3B4 (ENSPTXG00000009609) #11	MTMR11 (ENSPTXG00000009610) #12	OTUD7B (ENSPTXG00000009611) #13	VPS45 (ENSPTXG00000009612) #14	PLEKHO1 (ENSPTXG00000009613) #15	ANP32E (ENSPTXG00000009614) #16	ENSPTXG00000009615 #18	CA14 (ENSPTXG00000009616) #17	CIART (ENSPTXG00000009620) #20	MRPS21 (ENSPTXG00000009627) #21	PRPF3 (ENSPTXG00000009628) #22
Indian cobra	MODERN SPECIES	17	ENSNNAG00000015963	ENSNNAG00000015975	ENSNNAG00000015985	BOLA1 (ENSNNAG00000015987) #9	SV2A (ENSNNAG00000016009) #10	SF3B4 (ENSNNAG00000016086) #11	MTMR11 (ENSNNAG00000016103) #12	OTUD7B (ENSNNAG00000016147) #13	VPS45 (ENSNNAG00000016162) #14	PLEKHO1 (ENSNNAG00000016181) #15	ANP32E (ENSNNAG00000016195) #16	APH1A (ENSNNAG00000016205) #18	CA14 (ENSNNAG00000016244) #17	CIART (ENSNNAG00000016262) #20	MRPS21 (ENSNNAG00000016273) #21	PRPF3 (ENSNNAG00000010289) #22
Lizard	MODERN SPECIES	1400														CIART (ENSACAG00000003281) #20	MRPS21 (ENSACAG00000039268) #21	PRPF3 (ENSACAG00000003176) #22	RPRD2 (ENSACAG00000003131) #23	ENSACAG00000003076
Laterata	ANCESTRAL SPECIES	35	ENSGT00950000183112.b.b.a	ENSGT00940000161215	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT00550000074892	ENSGT00940000165572	ENSGT00940000156524	ENSGT00960000189065	ENSGT00530000064050	ENSGT00940000154703	ENSGT00390000017503	ENSGT00940000158734	ENSGT00390000010811	ENSGT00940000160002	ENSGT00390000003488.b
Argentine black and white tegu	MODERN SPECIES	78	ENSSMRG00000007852	ENSSMRG00000007856	ENSSMRG00000007864	BOLA1 (ENSSMRG00000007868) #9	SV2A (ENSSMRG00000007870) #10	SF3B4 (ENSSMRG00000007878) #11	MTMR11 (ENSSMRG00000007881) #12	OTUD7B (ENSSMRG00000007889) #13	VPS45 (ENSSMRG00000007898) #14	PLEKHO1 (ENSSMRG00000007902) #15	ANP32E (ENSSMRG00000007909) #16	APH1A (ENSSMRG00000007917) #18	CA14 (ENSSMRG00000007920) #17	CIART (ENSSMRG00000008013) #20	MRPS21 (ENSSMRG00000008015) #21	PRPF3 (ENSSMRG00000008016) #22	RPRD2 (ENSSMRG00000008019) #23	ENSSMRG00000008037	ECM1 (ENSSMRG00000010077) #25	ADAMTSL4 (ENSSMRG00000010079) #26	PI4KB (ENSSMRG00000010084)	ENSSMRG00000010092	ZNF687 (ENSSMRG00000010095)	PSMD4 (ENSSMRG00000010098)	PIP5K1A (ENSSMRG00000010099)	VPS72 (ENSSMRG00000010100)	TMOD4 (ENSSMRG00000010101)	SCNM1 (ENSSMRG00000010104)	LYSMD1 (ENSSMRG00000010106)	TNFAIP8L2 (ENSSMRG00000010107)	ENSSMRG00000010108
tuatara	MODERN SPECIES	1930	ENSSPUG00000001204	BOLA1 (ENSSPUG00000001195) #9	SV2A (ENSSPUG00000001040) #10	SF3B4 (ENSSPUG00000001028) #11	ENSSPUG00000001025	MTMR11 (ENSSPUG00000000998) #12	OTUD7B (ENSSPUG00000000961) #13	VPS45 (ENSSPUG00000000947) #14	PLEKHO1 (ENSSPUG00000000927) #15	ANP32E (ENSSPUG00000000918) #16	ENSSPUG00000000905	GOT2 (ENSSPUG00000000897)	APH1A (ENSSPUG00000000880) #18	CA14 (ENSSPUG00000000821) #17	MRPS21 (ENSSPUG00000000814) #21	PRPF3 (ENSSPUG00000000809) #22	ENSSPUG00000000795 #23	ENSSPUG00000000604	ECM1 (ENSSPUG00000000589) #25	ENSSPUG00000000586	ENSSPUG00000000582	ENSSPUG00000000575 #26	PI4KB (ENSSPUG00000000554)	ENSSPUG00000000431	ENSSPUG00000000418	ZNF687 (ENSSPUG00000000413)	PSMD4 (ENSSPUG00000000388)	PIP5K1A (ENSSPUG00000000161)	TMOD4 (ENSSPUG00000000085)	SCNM1 (ENSSPUG00000000075)	LYSMD1 (ENSSPUG00000000071)
Archelosauria	ANCESTRAL SPECIES	27	ENSGT00940000161215.hc.a	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT01000000215168	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT01040000240780	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36
Cryptodira	ANCESTRAL SPECIES	20	ENSGT00390000012412	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT01000000215168.a.b.b	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000154969.a	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT01040000240780	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36
Testudinoidea	ANCESTRAL SPECIES	17	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT01000000215168.a.a.a.b	ENSGT01010000223749.c	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000154969.a	ENSGT00390000006215 #25	ENSGT01090000260003.a.b.b.a.a.a.b.b.b #27	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b.a #27	ENSGT00940000155413 #28	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176.l #31	ENSGT00940000155176.k.a.a #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT01040000240780
Emydidae	ANCESTRAL SPECIES	18	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT01000000215168.a.a.a.b	ENSGT01010000223749.c	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000154969.a	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b.a #27	ENSGT00940000155413 #28	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176.l #31	ENSGT00940000155176.k.a.a #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT01040000240780	ENSGT00940000157471 #35
Three-toed box turtle	MODERN SPECIES	102	ENSTMTG00000003234	BOLA1 (ENSTMTG00000003267) #9	SV2A (ENSTMTG00000003281) #10	SF3B4 (ENSTMTG00000003355) #11	MTMR11 (ENSTMTG00000003371) #12	OTUD7B (ENSTMTG00000003400) #13	VPS45 (ENSTMTG00000003440) #14	PLEKHO1 (ENSTMTG00000003484) #15	ANP32E (ENSTMTG00000003525) #16	ENSTMTG00000003550	ENSTMTG00000003565	APH1A (ENSTMTG00000003583) #18	ENSTMTG00000003596 #17	CIART (ENSTMTG00000003619) #20	MRPS21 (ENSTMTG00000003635) #21	PRPF3 (ENSTMTG00000003651) #22	RPRD2 (ENSTMTG00000003690) #23	ENSTMTG00000003936	ECM1 (ENSTMTG00000007038) #25	ENSTMTG00000007077 #27	ENSA (ENSTMTG00000007092) #28	ENSTMTG00000007103	GOLPH3L (ENSTMTG00000007124) #29	ENSTMTG00000007143 #30	ENSTMTG00000007160 #31	CTSK (ENSTMTG00000007192) #32	ARNT (ENSTMTG00000007214) #33	ENSTMTG00000007315	SETDB1 (ENSTMTG00000007340) #35	CERS2 (ENSTMTG00000007401) #36	ANXA9 (ENSTMTG00000007428) #37
painted turtle	MODERN SPECIES	738	SF3B4 (ENSCPBG00000008041) #11	MTMR11 (ENSCPBG00000008053) #12	OTUD7B (ENSCPBG00000008074) #13	VPS45 (ENSCPBG00000008102) #14	PLEKHO1 (ENSCPBG00000008118) #15	ANP32E (ENSCPBG00000008122) #16	ENSCPBG00000008128	ENSCPBG00000008136	ENSCPBG00000008141	ENSCPBG00000008145	ENSCPBG00000008160	APH1A (ENSCPBG00000008178) #18	CA14 (ENSCPBG00000008191) #17	CIART (ENSCPBG00000008205) #20	MRPS21 (ENSCPBG00000008212) #21	PRPF3 (ENSCPBG00000008216) #22	RPRD2 (ENSCPBG00000008228) #23	ENSCPBG00000008240	ECM1 (ENSCPBG00000008276) #25	ADAMTSL4 (ENSCPBG00000008567) #26	ENSCPBG00000008588 #27	ENSA (ENSCPBG00000008598) #28	ENSCPBG00000008603	GOLPH3L (ENSCPBG00000008616) #29	HORMAD1 (ENSCPBG00000008626) #30	ENSCPBG00000008637 #31	ENSCPBG00000008648 #31	CTSK (ENSCPBG00000008661) #32	ARNT (ENSCPBG00000008682) #33	ENSCPBG00000008707	SETDB1 (ENSCPBG00000008716) #35
Testudinidae	ANCESTRAL SPECIES	3	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT01000000215168.a.b.b	ENSGT01000000215168.a.a.a.a	ENSGT01010000223749.c	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000154969.a	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b.b #27	ENSGT00940000155413 #28	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176.l #31	ENSGT00940000155176.k.a.a #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT01040000240780	ENSGT00940000157471 #35
Goode s thornscrub tortoise	MODERN SPECIES	16	MTMR11 (ENSGEVG00005013232) #12	OTUD7B (ENSGEVG00005013347) #13	VPS45 (ENSGEVG00005013432) #14	PLEKHO1 (ENSGEVG00005013486) #15	ANP32E (ENSGEVG00005013581) #16	ENSGEVG00005013610	ENSGEVG00005013639	ENSGEVG00005013683	ENSGEVG00005013716	ENSGEVG00005013772	ENSGEVG00005013824	APH1A (ENSGEVG00005013875) #18	CA14 (ENSGEVG00005013955) #17	CIART (ENSGEVG00005014432) #20	MRPS21 (ENSGEVG00005014452) #21	PRPF3 (ENSGEVG00005014482) #22	RPRD2 (ENSGEVG00005014526) #23	ENSGEVG00005014603	ECM1 (ENSGEVG00005014720) #25	ADAMTSL4 (ENSGEVG00005015036) #26	MCL1 (ENSGEVG00005016126) #27	ENSA (ENSGEVG00005016162) #28	ENSGEVG00005016208	GOLPH3L (ENSGEVG00005016244) #29	ENSGEVG00005016267 #30	ENSGEVG00005016308 #31	CTSS (ENSGEVG00005016424) #31	CTSK (ENSGEVG00005016496) #32	ARNT (ENSGEVG00005016585) #33	ENSGEVG00005016666	SETDB1 (ENSGEVG00005016733) #35
Abingdon island giant tortoise	MODERN SPECIES	1483									ENSCABG00000010864	ENSCABG00000010863	ENSCABG00000010861	APH1A (ENSCABG00000010860) #18	CA14 (ENSCABG00000010859) #17	CIART (ENSCABG00000010858) #20	MRPS21 (ENSCABG00000010856) #21	PRPF3 (ENSCABG00000010852) #22	RPRD2 (ENSCABG00000010851) #23	ENSCABG00000008715	ECM1 (ENSCABG00000008692) #25	ADAMTSL4 (ENSCABG00000008690) #26	MCL1 (ENSCABG00000008688) #27
Chinese turtle	MODERN SPECIES	737														CIART (ENSPSIG00000013681) #20	MRPS21 (ENSPSIG00000014569) #21	PRPF3 (ENSPSIG00000014877) #22	RPRD2 (ENSPSIG00000015034) #23	ENSPSIG00000015501	ENSPSIG00000008483 #17
Archosauria	ANCESTRAL SPECIES	36	ENSGT00940000158522	ENSGT00950000183112.b.b	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT01000000215168	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00940000166610	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT01040000240780	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00390000016607.b	ENSGT00450000040262
Aves	ANCESTRAL SPECIES	36	ENSGT00940000158522	ENSGT00950000183112.b.b	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT01000000215168	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00940000166610	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT01040000240780	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00390000016607.b	ENSGT00450000040262
Neognathae	ANCESTRAL SPECIES	28	ENSGT00950000183112.b.b	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT01000000215168	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00940000164936	ENSGT00940000166610	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00510000047412.a	ENSGT00940000160132	ENSGT00940000159088	ENSGT00390000016256	ENSGT00530000064067	ENSGT00390000015248	ENSGT00940000156698	ENSGT00900000141033.b.b
Galloanserae	ANCESTRAL SPECIES	31	ENSGT00940000161712	ENSGT00730000111174	ENSGT00940000158886	ENSGT00940000160444	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.e.b.a	ENSGT01100000263515.a.b.a.b.b.h.e.b.b	ENSGT00390000006372	ENSGT00940000159779	ENSGT01050000244808.D.fb.a	ENSGT01000000215168	ENSGT00390000002049.c.a #18	ENSGT00940000164936	ENSGT00940000156893 #17	ENSGT00940000166610	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00510000047412.a	ENSGT00940000160132	ENSGT00940000159088	ENSGT00390000016256	ENSGT00530000064067	ENSGT00390000015248	ENSGT00940000156698	ENSGT00900000141033.b.b
Phasianidae	ANCESTRAL SPECIES	32	ENSGT00940000161712	ENSGT00730000111174	ENSGT00940000158886	ENSGT00940000160444	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.e.b.a	ENSGT01100000263515.a.b.a.b.b.h.e.b.b	ENSGT00390000006372	ENSGT00940000159779	ENSGT01050000244808.D.fb.a	ENSGT01000000215168	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00940000164936	ENSGT00940000166610	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00390000014874	ENSGT00510000047412.a	ENSGT00940000160132	ENSGT00940000159088	ENSGT00390000016256	ENSGT00530000064067	ENSGT00390000015248	ENSGT00940000156698
Japanese quail	MODERN SPECIES	17	VSIG8 (ENSCJPG00005015184)	CFAP45 (ENSCJPG00005015183)	TAGLN2 (ENSCJPG00005015182)	IGSF9 (ENSCJPG00005015180)	DUSP23 (ENSCJPG00005015178)	ENSCJPG00005015177	ACKR1 (ENSCJPG00005015175)	CADM3 (ENSCJPG00005015173)	ENSCJPG00005015172	ENSCJPG00005015169	ENSCJPG00005015161	APH1A (ENSCJPG00005015160) #18	CA14 (ENSCJPG00005015159) #17	ENSCJPG00005015157	ENSCJPG00005015156	PRPF3 (ENSCJPG00005015093) #22	RPRD2 (ENSCJPG00005015092) #23	ENSCJPG00005015091	ENSCJPG00005015090 #25	MCL1 (ENSCJPG00005015089) #27	ENSA (ENSCJPG00005015088) #28	GOLPH3L (ENSCJPG00005015087) #29	HORMAD1 (ENSCJPG00005015086) #30	ENSCJPG00005015085	KHDC4 (ENSCJPG00005015082)	RIT1 (ENSCJPG00005015081)	SYT11 (ENSCJPG00005015080)	ENSCJPG00005014240	MSTO1 (ENSCJPG00005014239)	DAP3 (ENSCJPG00005014238)	ASH1L (ENSCJPG00005014237)
Phasianidae_b	ANCESTRAL SPECIES	31	ENSGT00940000161712	ENSGT00730000111174	ENSGT00940000158886	ENSGT00940000160444	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.e.b.a	ENSGT01100000263515.a.b.a.b.b.h.e.b.b	ENSGT00390000006372	ENSGT00940000159779	ENSGT01050000244808.D.fb.a	ENSGT01000000215168	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00940000164936	ENSGT00940000166610	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00390000014874	ENSGT00510000047412.a	ENSGT00940000160132	ENSGT00940000159088	ENSGT00390000016256	ENSGT00530000064067	ENSGT00390000015248	ENSGT00940000156698
Turkey	MODERN SPECIES	19	ENSMGAG00000001197	ENSMGAG00000020754	ENSMGAG00000000670	ENSMGAG00000021595	ENSMGAG00000019667	ENSMGAG00000018652	ENSMGAG00000017577	ENSMGAG00000018241	ENSMGAG00000000678	ENSMGAG00000018115	ENSMGAG00000022435	ENSMGAG00000000683 #18	ENSMGAG00000000694 #17	ENSMGAG00000000676	ENSMGAG00000000705	PRPF3 (ENSMGAG00000000707) #22	RPRD2 (ENSMGAG00000000731) #23	ECM1 (ENSMGAG00000020763) #25	MCL1 (ENSMGAG00000000736) #27	ENSA (ENSMGAG00000000738) #28	GOLPH3L (ENSMGAG00000000741) #29	HORMAD1 (ENSMGAG00000000746) #30	ENSMGAG00000000758	KHDC4 (ENSMGAG00000000764)	RIT1 (ENSMGAG00000000780)	SYT11 (ENSMGAG00000000792)	ENSMGAG00000000803	ENSMGAG00000000870	DAP3 (ENSMGAG00000000884)	ENSMGAG00000018283	ENSMGAG00000000905
Chicken	MODERN SPECIES	17	CFAP45 (ENSGALG00010028689)	TAGLN2 (ENSGALG00010028686)	IGSF9 (ENSGALG00010028878)	DUSP23 (ENSGALG00010028875)	CRPL2 (ENSGALG00010028683)	CRPL1 (ENSGALG00010028874)	ENSGALG00010028678	CADM3 (ENSGALG00010028671)	FCRL4 (ENSGALG00010028662)	ENSGALG00010028649	APH1A (ENSGALG00010028642) #18	ENSGALG00010028619	ENSGALG00010028613	ENSGALG00010028611 #17	MRPS21 (ENSGALG00010028609)	PRPF3 (ENSGALG00010028606) #22	RPRD2 (ENSGALG00010028472) #23	ENSGALG00010028464	ENSGALG00010028461 #25	MCL1 (ENSGALG00010028459) #27	ENSA (ENSGALG00010028455) #28	GOLPH3L (ENSGALG00010028452) #29	HORMAD1 (ENSGALG00010028866) #30	EFCAB12 (ENSGALG00010028449)	RIT1 (ENSGALG00010028448)	SYT11 (ENSGALG00010028445)	ENSGALG00010028437	MSTO1 (ENSGALG00010028433)	DAP3 (ENSGALG00010028425)	ASH1L (ENSGALG00010028392)	RUSC1 (ENSGALG00010028380)
Anatidae	ANCESTRAL SPECIES	81															ENSGT00940000166610	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000154566	ENSGT00960000189418	ENSGT00410000026290.i	ENSGT00940000162656	ENSGT00940000155399	ENSGT00940000161509	ENSGT00940000157244	ENSGT00940000161732	ENSGT00940000165149
Duck	MODERN SPECIES	17	TMEM79 (ENSAPLG00000028836)	PIP5K1A (ENSAPLG00000015266)	IGSF9 (ENSAPLG00000027030)	DUSP23 (ENSAPLG00000005043)	ENSAPLG00000017213	ENSAPLG00000001080	ACKR1 (ENSAPLG00000025585)	CADM3 (ENSAPLG00000017996)	ENSAPLG00000020034	ANP32E (ENSAPLG00000002620) #16	PLEKHO1 (ENSAPLG00000002526) #15	VPS45 (ENSAPLG00000002351) #14	OTUD7B (ENSAPLG00000004627) #13	ENSAPLG00000019128	ETV3 (ENSAPLG00000023696)	PRPF3 (ENSAPLG00000002440) #22	ENSAPLG00000002706 #23	ENSAPLG00000021823	ENSA (ENSAPLG00000010036) #28	GOLPH3L (ENSAPLG00000009987) #29	HORMAD1 (ENSAPLG00000009738) #30	SMG5 (ENSAPLG00000010263)	ENSAPLG00000022171	LMNA (ENSAPLG00000009487)	MEX3A (ENSAPLG00000009476)	UBQLN4 (ENSAPLG00000009055)	IQGAP3 (ENSAPLG00000007690)	MEF2D (ENSAPLG00000007271)	HAPLN2 (ENSAPLG00000016119)	ENSAPLG00000030819
Pink-footed goose	MODERN SPECIES	614															ENSABRG00000021303	PRPF3 (ENSABRG00000021295) #22	RPRD2 (ENSABRG00000021290) #23	ENSABRG00000021285
Neognathae_b	ANCESTRAL SPECIES	34	ENSGT00950000183112.b.b	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT01000000215168	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00940000164936	ENSGT00940000166610	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25
Passeriformes	ANCESTRAL SPECIES	36	ENSGT00940000158522	ENSGT00950000186203	ENSGT00950000183112.b.b	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00940000164936	ENSGT00940000166610	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT01040000240780	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000158641	ENSGT00530000063074.a	ENSGT00940000158341
Passeriformes_d	ANCESTRAL SPECIES	26	ENSGT01100000263845	ENSGT00940000158522	ENSGT00950000186203	ENSGT00950000183112.b.b	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00940000166610	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT01040000240780	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000160112	ENSGT00940000158641	ENSGT00530000063074.a	ENSGT00940000158341	ENSGT00940000155176 #31
Passeriformes_g	ANCESTRAL SPECIES	27	ENSGT01100000263845	ENSGT00940000158522	ENSGT00950000186203	ENSGT00950000183112.b.b	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00940000166610	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT01040000240780	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000160112	ENSGT00940000158641	ENSGT00530000063074.a	ENSGT00940000158341	ENSGT00940000155176 #31
Passeroidea	ANCESTRAL SPECIES	28	ENSGT01100000263845	ENSGT00940000158522	ENSGT00950000186203	ENSGT00950000183112.b.b	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00940000166610	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT00940000157759 #32	ENSGT00940000157585 #33	ENSGT01040000240780	ENSGT00940000157471 #35	ENSGT01030000234515.a.b.a.a #36	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000160112	ENSGT00940000158641	ENSGT00530000063074.a	ENSGT00940000158341	ENSGT00940000155176 #31
Common canary	MODERN SPECIES	81	ENSSCAG00000011758	SNX27 (ENSSCAG00000011769)	TXNIP (ENSSCAG00000011781)	HJV (ENSSCAG00000011784)	ENSSCAG00000011787	SF3B4 (ENSSCAG00000011792) #11	ENSSCAG00000011796 #12	OTUD7B (ENSSCAG00000011804) #13	VPS45 (ENSSCAG00000011835) #14	PLEKHO1 (ENSSCAG00000011918) #15	ANP32E (ENSSCAG00000011934) #16	CA14 (ENSSCAG00000011941) #17	APH1A (ENSSCAG00000011945) #18	ENSSCAG00000011949	ENSSCAG00000011951	PRPF3 (ENSSCAG00000011963) #22	ENSSCAG00000011971 #23	CTSK (ENSSCAG00000011979) #32	ARNT (ENSSCAG00000011985) #33	SETDB1 (ENSSCAG00000012005) #35	CERS2 (ENSSCAG00000012013) #36	PRUNE1 (ENSSCAG00000012016)	MLLT11 (ENSSCAG00000012022)	ENSSCAG00000012029	MSTO1 (ENSSCAG00000012061)	ASH1L (ENSSCAG00000012148)	ENSSCAG00000012172	FDPS (ENSSCAG00000012185)	ENSSCAG00000012198	CLK2 (ENSSCAG00000012209)	ENSSCAG00000012237
Zebra finch	MODERN SPECIES	18	RBM8A (ENSTGUG00000004447)	ENSTGUG00000020632	ENSTGUG00000021938	HJV (ENSTGUG00000013701)	BOLA1 (ENSTGUG00000022266) #9	SV2A (ENSTGUG00000025334) #10	SF3B4 (ENSTGUG00000019975) #11	MTMR11 (ENSTGUG00000004470) #12	OTUD7B (ENSTGUG00000004479) #13	VPS45 (ENSTGUG00000004493) #14	PLEKHO1 (ENSTGUG00000019427) #15	ANP32E (ENSTGUG00000004542) #16	APH1A (ENSTGUG00000020297) #18	CA14 (ENSTGUG00000020197) #17	ENSTGUG00000028735	PRPF3 (ENSTGUG00000004552) #22	RPRD2 (ENSTGUG00000004590) #23	ENSTGUG00000004602	ECM1 (ENSTGUG00000021608) #25	CTSK (ENSTGUG00000027582) #32	ARNT (ENSTGUG00000004647) #33	ENSTGUG00000023543	SETDB1 (ENSTGUG00000004684) #35	CERS2 (ENSTGUG00000004716) #36	MINDY1 (ENSTGUG00000023060)	PRUNE1 (ENSTGUG00000004774)	CDC42SE1 (ENSTGUG00000004784)	SEMA6C (ENSTGUG00000025575)	ENSTGUG00000021515	ENSTGUG00000026016	ARHGEF2 (ENSTGUG00000021755)
Medium ground finch	MODERN SPECIES	314						LIX1L (ENSGFOG00000007433)	RBM8A (ENSGFOG00000007446)	TXNIP (ENSGFOG00000007450)	SV2A (ENSGFOG00000007454) #10	ENSGFOG00000007463	OTUD7B (ENSGFOG00000007466) #13	VPS45 (ENSGFOG00000007475) #14	PLEKHO1 (ENSGFOG00000007477) #15	ANP32E (ENSGFOG00000007486) #16	APH1A (ENSGFOG00000007489) #18	PRPF3 (ENSGFOG00000007494) #22	ENSGFOG00000007506 #23	CTSK (ENSGFOG00000007554) #32	ARNT (ENSGFOG00000007566) #33	SETDB1 (ENSGFOG00000007653) #35	CERS2 (ENSGFOG00000007678) #36	PRUNE1 (ENSGFOG00000007714)	ENSGFOG00000008349	MLLT11 (ENSGFOG00000008360)	ARHGEF2 (ENSGFOG00000008683)	ENSGFOG00000008698 #31	RPS27 (ENSGFOG00000008709)	NDUFS2 (ENSGFOG00000008715)
Great tit	MODERN SPECIES	18	ENSPMJG00000001640	TXNIP (ENSPMJG00000001647)	ENSPMJG00000001651	HJV (ENSPMJG00000001653)	BOLA1 (ENSPMJG00000001655) #9	SV2A (ENSPMJG00000001656) #10	SF3B4 (ENSPMJG00000001660) #11	MTMR11 (ENSPMJG00000001664) #12	OTUD7B (ENSPMJG00000001674) #13	VPS45 (ENSPMJG00000001675) #14	PLEKHO1 (ENSPMJG00000001683) #15	ANP32E (ENSPMJG00000001694) #16	ENSPMJG00000001699 #17	ENSPMJG00000001707	ENSPMJG00000001710	PRPF3 (ENSPMJG00000001723) #22	RPRD2 (ENSPMJG00000001737) #23	ENSPMJG00000001784	ECM1 (ENSPMJG00000001797) #25	CTSK (ENSPMJG00000001799) #32	ARNT (ENSPMJG00000002875) #33	ENSPMJG00000002931	CERS2 (ENSPMJG00000002934) #36	MINDY1 (ENSPMJG00000002938)	PRUNE1 (ENSPMJG00000002944)	ENSPMJG00000002949	MLLT11 (ENSPMJG00000002952)	SEMA6C (ENSPMJG00000002953)	NUDT17 (ENSPMJG00000002961)	ENSPMJG00000002967	ARHGEF2 (ENSPMJG00000002972)
Neognathae_c	ANCESTRAL SPECIES	36	ENSGT00950000183112.b.b	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT01000000215168	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00940000164936	ENSGT00940000166610	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e
Kakapo	MODERN SPECIES	60	ENSSHBG00005016791	MEX3A (ENSSHBG00005016781)	LMNA (ENSSHBG00005016768)	ENSSHBG00005016763	ENSSHBG00005016749	SLC25A44 (ENSSHBG00005016737)	PMF1 (ENSSHBG00005016733)	BGLAP (ENSSHBG00005016730)	SMG5 (ENSSHBG00005015374)	TMEM79 (ENSSHBG00005015292)	CCT3 (ENSSHBG00005015253)	SSR2 (ENSSHBG00005015244)	APH1A (ENSSHBG00005015233) #18	ENSSHBG00005015053 #17	ENSSHBG00005015032	PRPF3 (ENSSHBG00005015012) #22	RPRD2 (ENSSHBG00005014997) #23	ENSSHBG00005014679
Golden eagle	MODERN SPECIES	25	ENSACCG00020002439	BOLA1 (ENSACCG00020002457) #9	SV2A (ENSACCG00020002500) #10	SF3B4 (ENSACCG00020002561) #11	MTMR11 (ENSACCG00020002599) #12	OTUD7B (ENSACCG00020002629) #13	VPS45 (ENSACCG00020002675) #14	PLEKHO1 (ENSACCG00020002713) #15	ANP32E (ENSACCG00020002729) #16	ENSACCG00020002744	ENSACCG00020002755	APH1A (ENSACCG00020002773) #18	CA14 (ENSACCG00020002807) #17	ENSACCG00020002847	ENSACCG00020002862	PRPF3 (ENSACCG00020002880) #22	RPRD2 (ENSACCG00020002913) #23	ENSACCG00020002960	ECM1 (ENSACCG00020003013) #25	RPS27 (ENSACCG00020003035)	RAB13 (ENSACCG00020003047)	JTB (ENSACCG00020003067)	CREB3L4 (ENSACCG00020003090)	SLC39A1 (ENSACCG00020003108)	CRTC2 (ENSACCG00020003135)	GATAD2B (ENSACCG00020003206)	INTS3 (ENSACCG00020003262)	ENSACCG00020003367	ILF2 (ENSACCG00020003414)	SNAPIN (ENSACCG00020003435)	ENSACCG00020003491
African ostrich	MODERN SPECIES	235									OTUD7B (ENSSCUG00000004558) #13	VPS45 (ENSSCUG00000004562) #14	PLEKHO1 (ENSSCUG00000004572) #15	ANP32E (ENSSCUG00000004582) #16	ENSSCUG00000004591	APH1A (ENSSCUG00000004598) #18	ENSSCUG00000004602	PRPF3 (ENSSCUG00000004608) #22	RPRD2 (ENSSCUG00000004616) #23
Anura	ANCESTRAL SPECIES	182															ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000154969.a	ENSGT00390000006215 #25	ENSGT00940000161136 #26	ENSGT01090000260003.a.b.b.a.a.a.b.b #27	ENSGT00940000155413 #28	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #29	ENSGT00390000018130.a.a.a #30	ENSGT00940000155176 #31	ENSGT00940000157759.b #32	ENSGT00940000157759.a #32	ENSGT00940000157585 #33	ENSGT00960000186669	ENSGT00940000157471 #35
Leishan spiny toad	MODERN SPECIES	354																PRPF3 (ENSLLEG00000010974) #22
Frog	MODERN SPECIES	8	nr2f5 (ENSXETG00000011046)	hjv (ENSXETG00000040701)	txnip (ENSXETG00000011050)	polr3gl (ENSXETG00000011053)	ankrd34a (ENSXETG00000011054)	ENSXETG00000041795	ENSXETG00000036611	ENSXETG00000047155	ENSXETG00000045399	ENSXETG00000036193	ENSXETG00000035193	ENSXETG00000043317	ENSXETG00000042982	ENSXETG00000028037	mrps21 (ENSXETG00000028038) #21	prpf3 (ENSXETG00000018654) #22	ENSXETG00000047709	rprd2 (ENSXETG00000018652) #23	tars2 (ENSXETG00000018640)	ECM1 (ENSXETG00000036393) #25	adamtsl4 (ENSXETG00000018086) #26	ENSXETG00000047405	mcl1 (ENSXETG00000008910) #27	ensa (ENSXETG00000026684) #28	onecut1.2 (ENSXETG00000040174)	golph3l (ENSXETG00000008912) #29	hormad1 (ENSXETG00000008913) #30	ctss (ENSXETG00000008914) #31	XB986811 [provisional:ctsk] (ENSXETG00000008916) #32	ENSXETG00000048153	ctsk (ENSXETG00000035558) #32
Coelacanth	MODERN SPECIES	1393													ENSLACG00000011683	MRPS21 (ENSLACG00000011137) #21	ENSLACG00000011015	PRPF3 (ENSLACG00000010541) #22	RPRD2 (ENSLACG00000009750) #23	CA14 (ENSLACG00000008879) #17	ENSLACG00000008646 #18	RAB13 (ENSLACG00000008103)	RPS27 (ENSLACG00000007901)	NUP210L (ENSLACG00000004865)	ENSLACG00000002856