Euteleostomi	ANCESTRAL SPECIES	104	ENSGT00990000205656	ENSGT00940000159237	ENSGT00940000160088	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000159261	ENSGT00940000153487.b.a	ENSGT00940000162053	ENSGT01030000234539.a.a.a	ENSGT00940000154662	ENSGT01030000234539.a.a.b.b	ENSGT00940000157006	ENSGT01030000234542.b.b.a.a.b	ENSGT00390000002049.d ##18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348	ENSGT00940000161136 #27
Sarcopterygii	ANCESTRAL SPECIES	262															ENSGT00390000018360 #20	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348	ENSGT00940000166610	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00940000159989	ENSGT00950000182891.a.a.b.a.b.a	ENSGT00390000009491.c	ENSGT00940000154489.B	ENSGT00950000183065.B	ENSGT00510000047366	ENSGT00390000003453.b.b	ENSGT00390000018324
Tetrapoda	ANCESTRAL SPECIES	106												ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00940000164936	ENSGT00390000018360 #20	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00390000016607.b
Amniota	ANCESTRAL SPECIES	28	ENSGT00950000183112.b.b	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00940000171776	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000154969.a	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Mammalia	ANCESTRAL SPECIES	25	ENSGT00940000158522	ENSGT00950000183112.b.b	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00940000164936	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835	ENSGT00390000016607.b
Theria	ANCESTRAL SPECIES	3	ENSGT00940000158522	ENSGT00950000183112.b.b	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835	ENSGT00390000016607.b
Eutheria	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835	ENSGT00390000016607.b
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Primates	ANCESTRAL SPECIES	7	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Haplorrhini	ANCESTRAL SPECIES	7	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Simiiformes	ANCESTRAL SPECIES	8	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00910000147146 #26	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413.k.a #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b.a.a #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00910000147146 #26	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413.k.a #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00390000009405.a.b #35	ENSGT00940000164740 #36	ENSGT00940000157471 #37
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b.a.a #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00910000147146 #26	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413.k.a #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a.g #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00390000009405.a.b #35	ENSGT00940000164740 #36	ENSGT00940000157471 #37
Hominidae	ANCESTRAL SPECIES	6	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b.a.a #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00910000147146 #26	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413.k.a #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a.g #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00390000009405.a.b #35	ENSGT00940000164740 #36	ENSGT00940000157471 #37
Orangutan	MODERN SPECIES		ENSPPYG00000030729	H2AC21 (ENSPPYG00000035072) #8	BOLA1 (ENSPPYG00000040309) #9	SV2A (ENSPPYG00000000913) #10	SF3B4 (ENSPPYG00000000912) #11	MTMR11 (ENSPPYG00000000911) #12	OTUD7B (ENSPPYG00000000910) #13	VPS45 (ENSPPYG00000000909) #14	PLEKHO1 (ENSPPYG00000034117) #15	ANP32E (ENSPPYG00000000907) #16	CA14 (ENSPPYG00000000906) #17	APH1A (ENSPPYG00000000905) #18	C1orf54 (ENSPPYG00000000904) #19	CIART (ENSPPYG00000000903) #20	MRPS21 (ENSPPYG00000032712) #21	PRPF3 (ENSPPYG00000000900) #22	RPRD2 (ENSPPYG00000000899) #23	TARS2 (ENSPPYG00000000898) #24	ECM1 (ENSPPYG00000000897) #25	ADAMTSL4 (ENSPPYG00000000896) #27	MCL1 (ENSPPYG00000000894) #28	ENSPPYG00000000893 ##29	GOLPH3L (ENSPPYG00000000892) #30	HORMAD1 (ENSPPYG00000000891) #31	CTSS (ENSPPYG00000000890) #32	CTSK (ENSPPYG00000000889) #33	ARNT (ENSPPYG00000000888) #34	CTXND2 (ENSPPYG00000031784) #36	SETDB1 (ENSPPYG00000000887) #37	CERS2 (ENSPPYG00000000886)	ANXA9 (ENSPPYG00000000885)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b.a.a #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00910000147146 #26	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413.k.a #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a.g #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00390000009405.a.b.a #35	ENSGT00940000164740 #36	ENSGT00940000157471 #37
Gorilla	MODERN SPECIES		HIST2H2AC (ENSGGOG00000040152) #7	H2AC21 (ENSGGOG00000040311) #8	BOLA1 (ENSGGOG00000002957) #9	SV2A (ENSGGOG00000002959) #10	SF3B4 (ENSGGOG00000004761) #11	MTMR11 (ENSGGOG00000004764) #12	OTUD7B (ENSGGOG00000024965) #13	VPS45 (ENSGGOG00000026516) #14	PLEKHO1 (ENSGGOG00000002021) #15	ENSGGOG00000011889 #16	CA14 (ENSGGOG00000017116) #17	APH1A (ENSGGOG00000017118) #18	C1orf54 (ENSGGOG00000016964) #19	CIART (ENSGGOG00000016967) #20	MRPS21 (ENSGGOG00000027532) #21	PRPF3 (ENSGGOG00000013174) #22	RPRD2 (ENSGGOG00000004818) #23	TARS2 (ENSGGOG00000006311) #24	ENSGGOG00000006323 #25	ENSGGOG00000041363 #25	ENSGGOG00000042298 #26	ADAMTSL4 (ENSGGOG00000016142) #27	MCL1 (ENSGGOG00000016154) #28	ENSGGOG00000023948 #29	GOLPH3L (ENSGGOG00000000869) #30	HORMAD1 (ENSGGOG00000004337) #31	ENSGGOG00000004909 #32	CTSK (ENSGGOG00000015378) #33	ARNT (ENSGGOG00000015383) #34	ENSGGOG00000023315 #35	CTXND2 (ENSGGOG00000038429) #36
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b.a.a #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00910000147146 #26	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413.k.a #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a.g #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00390000009405.a.b.a #35	ENSGT00940000164740 #36	ENSGT00940000157471 #37
Human	MODERN SPECIES		H2AC20 (ENSG00000184260) #7	H2AC21 (ENSG00000184270) #8	BOLA1 (ENSG00000178096) #9	SV2A (ENSG00000159164) #10	SF3B4 (ENSG00000143368) #11	MTMR11 (ENSG00000014914) #12	OTUD7B (ENSG00000264522) #13	VPS45 (ENSG00000136631) #14	PLEKHO1 (ENSG00000023902) #15	ANP32E (ENSG00000143401) #16	CA14 (ENSG00000118298) #17	APH1A (ENSG00000117362) #18	C1orf54 (ENSG00000118292) #19	CIART (ENSG00000159208) #20	MRPS21 (ENSG00000266472) #21	PRPF3 (ENSG00000117360) #22	RPRD2 (ENSG00000163125) #23	TARS2 (ENSG00000143374) #24	ECM1 (ENSG00000143369) #25	ADAMTSL4 (ENSG00000143382) #27	MCL1 (ENSG00000143384) #28	ENSA (ENSG00000143420) #29	GOLPH3L (ENSG00000143457) #30	HORMAD1 (ENSG00000143452) #31	CTSS (ENSG00000163131) #32	CTSK (ENSG00000143387) #33	ARNT (ENSG00000143437) #34	CTXND2 (ENSG00000283324) #36	SETDB1 (ENSG00000143379) #37	CERS2 (ENSG00000143418)	ANXA9 (ENSG00000143412)
Pan	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b.a.a #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00910000147146 #26	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413.k.a #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a.g #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00390000009405.a.b.a #35	ENSGT00940000164740 #36	ENSGT00940000157471 #37
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	21	NCOA2 (ENSPTRG00000020333)	ENSPTRG00000040239	PRDM14 (ENSPTRG00000020331)	ENSPTRG00000050493	ENSPTRG00000046835	SLCO5A1 (ENSPTRG00000020330)	SULF1 (ENSPTRG00000020328)	ENSPTRG00000052468	C8H8orf34 (ENSPTRG00000020325)	PREX2 (ENSPTRG00000020324)	CPA6 (ENSPTRG00000020322)	ARFGEF1 (ENSPTRG00000020320)	CSPP1 (ENSPTRG00000020319)	COPS5 (ENSPTRG00000020317)	ENSPTRG00000045983	ENSPTRG00000047819 #22	PPP1R42 (ENSPTRG00000020316)	TCF24 (ENSPTRG00000043956)	MCMDC2 (ENSPTRG00000020313)	SGK3 (ENSPTRG00000020312)	ENSPTRG00000052460	C8H8orf44 (ENSPTRG00000020310)	VCPIP1 (ENSPTRG00000020309)	MYBL1 (ENSPTRG00000020308)	VXN (ENSPTRG00000045591)	ADHFE1 (ENSPTRG00000045798)	RRS1 (ENSPTRG00000030988)	CRH (ENSPTRG00000020304)	TRIM55 (ENSPTRG00000020302)	DNAJC5B (ENSPTRG00000020301)	PDE7A (ENSPTRG00000030991)
Chimpanzee	MODERN SPECIES		H2AC20 (ENSPTRG00000052021) #7	H2AC21 (ENSPTRG00000047219) #8	BOLA1 (ENSPTRG00000001241) #9	SV2A (ENSPTRG00000001242) #10	SF3B4 (ENSPTRG00000001243) #11	MTMR11 (ENSPTRG00000001244) #12	OTUD7B (ENSPTRG00000001245) #13	VPS45 (ENSPTRG00000001246) #14	PLEKHO1 (ENSPTRG00000001247) #15	ANP32E (ENSPTRG00000046939) #16	CA14 (ENSPTRG00000001249) #17	APH1A (ENSPTRG00000001250) #18	C1H1orf54 (ENSPTRG00000001251) #19	CIART (ENSPTRG00000001252) #20	MRPS21 (ENSPTRG00000034372) #21	PRPF3 (ENSPTRG00000001254) #22	RPRD2 (ENSPTRG00000001255) #23	TARS2 (ENSPTRG00000001256) #24	ECM1 (ENSPTRG00000001257) #25	ADAMTSL4 (ENSPTRG00000001258) #27	ENSPTRG00000040851 #26	MCL1 (ENSPTRG00000001260) #28	ENSA (ENSPTRG00000001261) #29	GOLPH3L (ENSPTRG00000001262) #30	HORMAD1 (ENSPTRG00000001263) #31	CTSS (ENSPTRG00000001264) #32	CTSK (ENSPTRG00000001265) #33	ARNT (ENSPTRG00000001266) #34	ENSPTRG00000044588 #35	CTXND2 (ENSPTRG00000043902) #36	SETDB1 (ENSPTRG00000001267) #37
Bonobo	DUPLICATION
Bonobo	MODERN SPECIES	21	ENSPPAG00000030392	PRDM14 (ENSPPAG00000027098)	ENSPPAG00000032396	ENSPPAG00000029133	SLCO5A1 (ENSPPAG00000011123)	ENSPPAG00000041983	SULF1 (ENSPPAG00000041354)	ENSPPAG00000031242	C8orf34 (ENSPPAG00000035210)	PREX2 (ENSPPAG00000033752)	CPA6 (ENSPPAG00000040368)	ARFGEF1 (ENSPPAG00000041346)	CSPP1 (ENSPPAG00000034833)	COPS5 (ENSPPAG00000031468)	ENSPPAG00000033505	ENSPPAG00000043769 #22	ENSPPAG00000036430	ENSPPAG00000034583	ENSPPAG00000033423	SGK3 (ENSPPAG00000037172)	ENSPPAG00000039360	ENSPPAG00000041765	VCPIP1 (ENSPPAG00000028693)	MYBL1 (ENSPPAG00000031091)	VXN (ENSPPAG00000042638)	ADHFE1 (ENSPPAG00000043914)	RRS1 (ENSPPAG00000024378)	CRH (ENSPPAG00000020093)	TRIM55 (ENSPPAG00000028998)	DNAJC5B (ENSPPAG00000042664)	PDE7A (ENSPPAG00000037038)
Bonobo	MODERN SPECIES		H2AC20 (ENSPPAG00000022736) #7	H2AC21 (ENSPPAG00000019861) #8	BOLA1 (ENSPPAG00000025235) #9	SV2A (ENSPPAG00000028470) #10	SF3B4 (ENSPPAG00000040904) #11	MTMR11 (ENSPPAG00000030287) #12	OTUD7B (ENSPPAG00000027439) #13	VPS45 (ENSPPAG00000039563) #14	PLEKHO1 (ENSPPAG00000035597) #15	ANP32E (ENSPPAG00000032079) #16	CA14 (ENSPPAG00000027877) #17	APH1A (ENSPPAG00000033416) #18	C1orf54 (ENSPPAG00000041323) #19	CIART (ENSPPAG00000043860) #20	MRPS21 (ENSPPAG00000041557) #21	PRPF3 (ENSPPAG00000030983) #22	RPRD2 (ENSPPAG00000028604) #23	TARS2 (ENSPPAG00000042011) #24	ECM1 (ENSPPAG00000031650) #25	ADAMTSL4 (ENSPPAG00000042395) #27	ENSPPAG00000034501 #26	MCL1 (ENSPPAG00000038714) #28	ENSPPAG00000001282 #29	GOLPH3L (ENSPPAG00000017189) #30	HORMAD1 (ENSPPAG00000006843) #31	CTSS (ENSPPAG00000030281) #32	CTSK (ENSPPAG00000041595) #33	ARNT (ENSPPAG00000040647) #34	ENSPPAG00000026470 #35	CTXND2 (ENSPPAG00000024020) #36	SETDB1 (ENSPPAG00000041015) #37
Gibbon	MODERN SPECIES	2	ENSNLEG00000034350	H2BC21 (ENSNLEG00000034437)	H2AC20 (ENSNLEG00000031795) #7	SV2A (ENSNLEG00000009675) #10	ENSNLEG00000009693 #11	MTMR11 (ENSNLEG00000009701) #12	OTUD7B (ENSNLEG00000009731) #13	VPS45 (ENSNLEG00000009742) #14	ENSNLEG00000009769 #15	ANP32E (ENSNLEG00000032790) #16	CA14 (ENSNLEG00000009787) #17	C1orf54 (ENSNLEG00000009825) #19	APH1A (ENSNLEG00000009799) #18	CIART (ENSNLEG00000009830) #20	MRPS21 (ENSNLEG00000031023) #21	PRPF3 (ENSNLEG00000009841) #22	ENSNLEG00000029292 #23	TARS2 (ENSNLEG00000009858) #24	ECM1 (ENSNLEG00000009877) #25	ENSNLEG00000033454 #26	ADAMTSL4 (ENSNLEG00000009896) #27	MCL1 (ENSNLEG00000009922) #28	ENSNLEG00000009928 #29	GOLPH3L (ENSNLEG00000028540) #30	HORMAD1 (ENSNLEG00000009941) #31	CTSS (ENSNLEG00000009960) #32	CTSK (ENSNLEG00000033510) #33	ARNT (ENSNLEG00000009971) #34	CTXND2 (ENSNLEG00000035943) #36	SETDB1 (ENSNLEG00000009996) #37	CERS2 (ENSNLEG00000010014)
Cercopithecidae	ANCESTRAL SPECIES	22	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b.b ##21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00910000147146 #26	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413.l.a.a ##29	ENSGT00940000155413.k.a #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00390000009405.a.b #35	ENSGT00940000164740 #36
Rhinopithecus	ANCESTRAL SPECIES	23	ENSGT01100000263575.B.u	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b.b ##21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00910000147146 #26	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413.l.a.a ##29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00390000009405.a.b #35	ENSGT00940000164740 #36	ENSGT00940000157471 #37
Golden snub-nosed monkey	MODERN SPECIES	2622	ENSRROG00000000406	H2AC20 (ENSRROG00000024717) #7	H2AC21 (ENSRROG00000026620) #8	SV2A (ENSRROG00000030492) #10	SF3B4 (ENSRROG00000029366) #11	MTMR11 (ENSRROG00000031467) #12	OTUD7B (ENSRROG00000013470) #13	VPS45 (ENSRROG00000034970) #14	PLEKHO1 (ENSRROG00000029550) #15	ANP32E (ENSRROG00000030038) #16	ENSRROG00000009807 #17	APH1A (ENSRROG00000045010) #18	C1orf54 (ENSRROG00000032162) #19	CIART (ENSRROG00000031459) #20	MRPS21 (ENSRROG00000035197) ##21	PRPF3 (ENSRROG00000027464) #22	RPRD2 (ENSRROG00000044462) #23	TARS2 (ENSRROG00000030946) #24	ECM1 (ENSRROG00000030152) #25	ENSRROG00000044578 #26	ADAMTSL4 (ENSRROG00000035617) #27	MCL1 (ENSRROG00000033266) #28	ENSRROG00000034733 ##29	GOLPH3L (ENSRROG00000042636) #30	HORMAD1 (ENSRROG00000007880) #31	CTSS (ENSRROG00000039722) #32	CTSK (ENSRROG00000036101) #33	ARNT (ENSRROG00000032414) #34	ENSRROG00000010877 #35	ENSRROG00000015516	CTXND2 (ENSRROG00000017486) #36
Black snub-nosed monkey	MODERN SPECIES	590		H2BC21 (ENSRBIG00000006763)	H2AC20 (ENSRBIG00000024633) #7	H2AC21 (ENSRBIG00000020060) #8	SV2A (ENSRBIG00000034170) #10	SF3B4 (ENSRBIG00000043392) #11	MTMR11 (ENSRBIG00000044428) #12	OTUD7B (ENSRBIG00000030452) #13	VPS45 (ENSRBIG00000043305) #14	PLEKHO1 (ENSRBIG00000020541) #15	ANP32E (ENSRBIG00000032210) #16	CA14 (ENSRBIG00000029322) #17	APH1A (ENSRBIG00000035934) #18	C1orf54 (ENSRBIG00000027635) #19	CIART (ENSRBIG00000026376) #20	PRPF3 (ENSRBIG00000028854) #22	RPRD2 (ENSRBIG00000032833) #23	TARS2 (ENSRBIG00000044518) #24	ECM1 (ENSRBIG00000029889) #25	ADAMTSL4 (ENSRBIG00000044718) #27	MCL1 (ENSRBIG00000031092) #28	ENSRBIG00000027848 ##29	GOLPH3L (ENSRBIG00000033265) #30	HORMAD1 (ENSRBIG00000031865) #31	CTSS (ENSRBIG00000034911) #32	CTSK (ENSRBIG00000011955) #33	ARNT (ENSRBIG00000043770) #34	ENSRBIG00000015869 #35	CTXND2 (ENSRBIG00000017453) #36	SETDB1 (ENSRBIG00000042359) #37	CERS2 (ENSRBIG00000029589)
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b.b ##21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413.l.b ##29	ENSGT00940000155413.k.a #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b.b ##21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413.l.b ##29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00390000009405.a.b #35	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Macaca	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b.b ##21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413.l.b ##29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00390000009405.a.b #35	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Pig-tailed macaque	MODERN SPECIES	262	H2BC21 (ENSMNEG00000013123)	H2AC20 (ENSMNEG00000028094) #7	H2AC21 (ENSMNEG00000009606) #8	SV2A (ENSMNEG00000037160) #10	SF3B4 (ENSMNEG00000031839) #11	MTMR11 (ENSMNEG00000033672) #12	OTUD7B (ENSMNEG00000034782) #13	VPS45 (ENSMNEG00000035754) #14	PLEKHO1 (ENSMNEG00000033535) #15	ANP32E (ENSMNEG00000042651) #16	CA14 (ENSMNEG00000035520) #17	APH1A (ENSMNEG00000034177) #18	C1orf54 (ENSMNEG00000038419) #19	CIART (ENSMNEG00000040203) #20	ENSMNEG00000031239 ##21	PRPF3 (ENSMNEG00000038161) #22	RPRD2 (ENSMNEG00000028542) #23	TARS2 (ENSMNEG00000042066) #24	ECM1 (ENSMNEG00000015328) #25	ADAMTSL4 (ENSMNEG00000028307) #27	MCL1 (ENSMNEG00000045448) #28	ENSA (ENSMNEG00000031456) ##29	GOLPH3L (ENSMNEG00000008522) #30	HORMAD1 (ENSMNEG00000043307) #31	CTSS (ENSMNEG00000034738) #32	CTSK (ENSMNEG00000033034) #33	ARNT (ENSMNEG00000044100) #34	ENSMNEG00000005779 #35	SETDB1 (ENSMNEG00000017223) #37	CERS2 (ENSMNEG00000042406)	ANXA9 (ENSMNEG00000000542)
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b.b ##21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413.l.b ##29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835	ENSGT00390000016607.b
Crab-eating macaque	MODERN SPECIES		H2AC20 (ENSMFAG00000005216) #7	H2AC21 (ENSMFAG00000054389) #8	BOLA1 (ENSMFAG00000048940) #9	SV2A (ENSMFAG00000034474) #10	SF3B4 (ENSMFAG00000042395) #11	MTMR11 (ENSMFAG00000031699) #12	OTUD7B (ENSMFAG00000001415) #13	VPS45 (ENSMFAG00000032727) #14	PLEKHO1 (ENSMFAG00000034638) #15	ANP32E (ENSMFAG00000000851) #16	CA14 (ENSMFAG00000040977) #17	APH1A (ENSMFAG00000034137) #18	C1orf54 (ENSMFAG00000002775) #19	CIART (ENSMFAG00000042429) #20	MRPS21 (ENSMFAG00000042375) ##21	PRPF3 (ENSMFAG00000039791) #22	RPRD2 (ENSMFAG00000002559) #23	TARS2 (ENSMFAG00000030387) #24	ECM1 (ENSMFAG00000040115) #25	ADAMTSL4 (ENSMFAG00000002869) #27	MCL1 (ENSMFAG00000042545) #28	ENSA (ENSMFAG00000001523) ##29	GOLPH3L (ENSMFAG00000042364) #30	HORMAD1 (ENSMFAG00000000795) #31	CTSS (ENSMFAG00000035464) #32	CTSK (ENSMFAG00000000402) #33	ARNT (ENSMFAG00000038379) #34	SETDB1 (ENSMFAG00000042328) #37	CERS2 (ENSMFAG00000038604)	ENSMFAG00000055601	PIP5K1A (ENSMFAG00000031399)
Rhesus	MODERN SPECIES		SV2A (ENSMMUG00000007257) #10	SF3B4 (ENSMMUG00000007256) #11	MTMR11 (ENSMMUG00000007246) #12	ENSMMUG00000052282	OTUD7B (ENSMMUG00000007244) #13	VPS45 (ENSMMUG00000013673) #14	PLEKHO1 (ENSMMUG00000013681) #15	ANP32E (ENSMMUG00000021531) #16	CA14 (ENSMMUG00000021385) #17	APH1A (ENSMMUG00000021386) #18	C1H1orf54 (ENSMMUG00000021387) #19	CIART (ENSMMUG00000021388) #20	ENSMMUG00000049420	MRPS21 (ENSMMUG00000021391) ##21	ENSMMUG00000060724	PRPF3 (ENSMMUG00000016301) #22	RPRD2 (ENSMMUG00000007303) #23	TARS2 (ENSMMUG00000006256) #24	ECM1 (ENSMMUG00000006257) #25	ADAMTSL4 (ENSMMUG00000008218) #27	MCL1 (ENSMMUG00000053525) #28	ENSA (ENSMMUG00000012814) ##29	GOLPH3L (ENSMMUG00000010668) #30	HORMAD1 (ENSMMUG00000010669) #31	CTSS (ENSMMUG00000010670) #32	ARNT (ENSMMUG00000000541) #34	SETDB1 (ENSMMUG00000023235) #37	CERS2 (ENSMMUG00000023234)	ANXA9 (ENSMMUG00000023231)	MINDY1 (ENSMMUG00000010067)	PRUNE1 (ENSMMUG00000010068)
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b.b ##21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413.k.a #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00390000009405.a.b #35	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Olive baboon	MODERN SPECIES		H2BC21 (ENSPANG00000043204)	H2AC21 (ENSPANG00000048915) #8	BOLA1 (ENSPANG00000005165) #9	SV2A (ENSPANG00000008740) #10	SF3B4 (ENSPANG00000005126) #11	MTMR11 (ENSPANG00000020583) #12	OTUD7B (ENSPANG00000009169) #13	VPS45 (ENSPANG00000012294) #14	PLEKHO1 (ENSPANG00000007434) #15	ANP32E (ENSPANG00000032905) #16	CA14 (ENSPANG00000012135) #17	APH1A (ENSPANG00000008739) #18	C1orf54 (ENSPANG00000033401) #19	CIART (ENSPANG00000034379) #20	MRPS21 (ENSPANG00000030104) ##21	PRPF3 (ENSPANG00000000499) #22	RPRD2 (ENSPANG00000019137) #23	TARS2 (ENSPANG00000016774) #24	ECM1 (ENSPANG00000006364) #25	ADAMTSL4 (ENSPANG00000011009) #27	MCL1 (ENSPANG00000016574) #28	ENSA (ENSPANG00000021851) #29	GOLPH3L (ENSPANG00000036054) #30	HORMAD1 (ENSPANG00000009155) #31	CTSS (ENSPANG00000021581) #32	CTSK (ENSPANG00000009168) #33	ARNT (ENSPANG00000016773) #34	SETDB1 (ENSPANG00000020214) #37	CERS2 (ENSPANG00000012293)	ANXA9 (ENSPANG00000012518)	MINDY1 (ENSPANG00000015350)
Cercopithecinae_d	ANCESTRAL SPECIES	29	ENSGT01100000263575.B.t.a.b	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.m #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413.k.a #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00390000009405.a.b #35	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Sooty mangabey	MODERN SPECIES	153		H2BC21 (ENSCATG00000020834)	H2AC20 (ENSCATG00000017082) #7	H2AC21 (ENSCATG00000018627) #8	SV2A (ENSCATG00000034955) #10	SF3B4 (ENSCATG00000033114) #11	MTMR11 (ENSCATG00000034367) #12	OTUD7B (ENSCATG00000039246) #13	VPS45 (ENSCATG00000033198) #14	PLEKHO1 (ENSCATG00000031337) #15	ANP32E (ENSCATG00000033019) #16	CA14 (ENSCATG00000044036) #17	APH1A (ENSCATG00000033983) #18	C1orf54 (ENSCATG00000033751) #19	CIART (ENSCATG00000032392) #20	PRPF3 (ENSCATG00000041778) #22	RPRD2 (ENSCATG00000033842) #23	TARS2 (ENSCATG00000034784) #24	ECM1 (ENSCATG00000033093) #25	ADAMTSL4 (ENSCATG00000043576) #27	MCL1 (ENSCATG00000032744) #28	ENSCATG00000032600 ##29	GOLPH3L (ENSCATG00000033915) #30	HORMAD1 (ENSCATG00000039929) #31	CTSS (ENSCATG00000036085) #32	CTSK (ENSCATG00000036086) #33	ARNT (ENSCATG00000041677) #34	SETDB1 (ENSCATG00000044888) #37	CERS2 (ENSCATG00000031279)	ANXA9 (ENSCATG00000034635)	MINDY1 (ENSCATG00000038845)
Drill	DUPLICATION
Drill	MODERN SPECIES	584	NCOA2 (ENSMLEG00000034329)	PRDM14 (ENSMLEG00000027772)	ENSMLEG00000023557	ENSMLEG00000041678	ENSMLEG00000030182	SLCO5A1 (ENSMLEG00000036819)	SULF1 (ENSMLEG00000036884)	C8orf34 (ENSMLEG00000033292)	PREX2 (ENSMLEG00000004343)	CPA6 (ENSMLEG00000039764)	ARFGEF1 (ENSMLEG00000043500)	ENSMLEG00000035224	CSPP1 (ENSMLEG00000007846)	ENSMLEG00000015396	ENSMLEG00000035973	ENSMLEG00000041065 #22	PPP1R42 (ENSMLEG00000040981)	TCF24 (ENSMLEG00000039858)	ENSMLEG00000000766	MCMDC2 (ENSMLEG00000038410)	SGK3 (ENSMLEG00000041322)	ENSMLEG00000042544	ENSMLEG00000037739	VCPIP1 (ENSMLEG00000035358)	MYBL1 (ENSMLEG00000032838)	VXN (ENSMLEG00000029077)	ADHFE1 (ENSMLEG00000037829)	RRS1 (ENSMLEG00000004794)	ENSMLEG00000007645	CRH (ENSMLEG00000021986)	TRIM55 (ENSMLEG00000037287)
Drill	MODERN SPECIES	411	H2BC21 (ENSMLEG00000028179)	H2AC20 (ENSMLEG00000032236) #7	H2AC21 (ENSMLEG00000025354) #8	BOLA1 (ENSMLEG00000000340) #9	SV2A (ENSMLEG00000027748) #10	SF3B4 (ENSMLEG00000038667) #11	MTMR11 (ENSMLEG00000037687) #12	OTUD7B (ENSMLEG00000043764) #13	VPS45 (ENSMLEG00000014395) #14	PLEKHO1 (ENSMLEG00000041687) #15	ANP32E (ENSMLEG00000025639) #16	CA14 (ENSMLEG00000037597) #17	APH1A (ENSMLEG00000037901) #18	C1orf54 (ENSMLEG00000007055) #19	CIART (ENSMLEG00000009773) #20	PRPF3 (ENSMLEG00000040609) #22	RPRD2 (ENSMLEG00000028436) #23	TARS2 (ENSMLEG00000030174) #24	ECM1 (ENSMLEG00000023846) #25	ADAMTSL4 (ENSMLEG00000041962) #27	MCL1 (ENSMLEG00000026079) #28	ENSA (ENSMLEG00000028446) #29	GOLPH3L (ENSMLEG00000042824) #30	HORMAD1 (ENSMLEG00000023333) #31	CTSS (ENSMLEG00000037846) #32	CTSK (ENSMLEG00000035690) #33	ARNT (ENSMLEG00000043783) #34	ENSMLEG00000027987 #35	SETDB1 (ENSMLEG00000033050) #37	CERS2 (ENSMLEG00000037916)	ANXA9 (ENSMLEG00000038293)
Platyrrhini	ANCESTRAL SPECIES	12	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.o #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00910000147146 #26	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b.e #28	ENSGT00940000155413.k.a #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a
Cebidae	ANCESTRAL SPECIES	12	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.o #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00910000147146 #26	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b.e #28	ENSGT00940000155413.k.a #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a
Cebidae_a	ANCESTRAL SPECIES	6	ENSGT01100000263575.B.t.a.a.a	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.o #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.y.b #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00910000147146 #26	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b.e #28	ENSGT00940000155413.k.a #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a
Bolivian squirrel monkey	MODERN SPECIES	194	ENSSBOG00000008360	H2AC20 (ENSSBOG00000019840) #7	H2AC21 (ENSSBOG00000017659) #8	SV2A (ENSSBOG00000030706) #10	ENSSBOG00000012310 #11	MTMR11 (ENSSBOG00000018459) #12	OTUD7B (ENSSBOG00000022601) #13	VPS45 (ENSSBOG00000029517) #14	PLEKHO1 (ENSSBOG00000031989) #15	ANP32E (ENSSBOG00000033935) #16	CA14 (ENSSBOG00000024949) #17	APH1A (ENSSBOG00000025150) #18	C1orf54 (ENSSBOG00000013160) #19	CIART (ENSSBOG00000024903) #20	MRPS21 (ENSSBOG00000000667) #21	PRPF3 (ENSSBOG00000033104) #22	RPRD2 (ENSSBOG00000020427) #23	TARS2 (ENSSBOG00000001108) #24	ECM1 (ENSSBOG00000031851) #25	ENSSBOG00000003745 #26	ADAMTSL4 (ENSSBOG00000028243) #27	MCL1 (ENSSBOG00000035804) #28	ENSA (ENSSBOG00000030145) #29	GOLPH3L (ENSSBOG00000035901) #30	HORMAD1 (ENSSBOG00000034042) #31	CTSS (ENSSBOG00000027502) #32	CTSK (ENSSBOG00000028605) #33	ARNT (ENSSBOG00000025839) #34	CTXND2 (ENSSBOG00000016796) #36	SETDB1 (ENSSBOG00000028608) #37	CERS2 (ENSSBOG00000033621)
Capuchin	MODERN SPECIES	188	ENSCCAG00000034681	H2BC21 (ENSCCAG00000020545)	H2AC20 (ENSCCAG00000005773) #7	H2AC21 (ENSCCAG00000020094) #8	SV2A (ENSCCAG00000035849) #10	ENSCCAG00000021751 #11	MTMR11 (ENSCCAG00000035057) #12	OTUD7B (ENSCCAG00000036948) #13	VPS45 (ENSCCAG00000037065) #14	PLEKHO1 (ENSCCAG00000033185) #15	ENSCCAG00000020910	CA14 (ENSCCAG00000023681) #17	APH1A (ENSCCAG00000036376) #18	C1orf54 (ENSCCAG00000032327) #19	CIART (ENSCCAG00000027921) #20	PRPF3 (ENSCCAG00000026380) #22	RPRD2 (ENSCCAG00000032422) #23	TARS2 (ENSCCAG00000034305) #24	ECM1 (ENSCCAG00000026093) #25	ENSCCAG00000027383 #26	ADAMTSL4 (ENSCCAG00000026279) #27	MCL1 (ENSCCAG00000029442) #28	ENSCCAG00000029199 #29	GOLPH3L (ENSCCAG00000000006) #30	HORMAD1 (ENSCCAG00000028128) #31	CTSS (ENSCCAG00000021854) #32	CTSK (ENSCCAG00000029150) #33	ARNT (ENSCCAG00000029182) #34	ENSCCAG00000025398	CTXND2 (ENSCCAG00000006838) #36	SETDB1 (ENSCCAG00000024882) #37
Marmoset	MODERN SPECIES	9	H2BC21 (ENSCJAG00000081464)	H2AC20 (ENSCJAG00000048427) #7	BOLA1 (ENSCJAG00000044018) #9	SV2A (ENSCJAG00000000779) #10	SF3B4 (ENSCJAG00000042351) #11	MTMR11 (ENSCJAG00000000802) #12	OTUD7B (ENSCJAG00000000821) #13	VPS45 (ENSCJAG00000000845) #14	PLEKHO1 (ENSCJAG00000000867) #15	ANP32E (ENSCJAG00000009710) #16	CA14 (ENSCJAG00000009756) #17	APH1A (ENSCJAG00000009786) #18	C1orf54 (ENSCJAG00000009890) #19	CIART (ENSCJAG00000009905) #20	MRPS21 (ENSCJAG00000041203) #21	PRPF3 (ENSCJAG00000009926) #22	RPRD2 (ENSCJAG00000006424) #23	MCL1 (ENSCJAG00000006605) #28	TARS2 (ENSCJAG00000006429) #24	ECM1 (ENSCJAG00000006499) #25	ADAMTSL4 (ENSCJAG00000006555) #27	ENSCJAG00000038289	ENSCJAG00000080548	ENSA (ENSCJAG00000046173) #29	GOLPH3L (ENSCJAG00000055606) #30	HORMAD1 (ENSCJAG00000006705) #31	CTSS (ENSCJAG00000006790) #32	CTSK (ENSCJAG00000006804) #33	ARNT (ENSCJAG00000006839) #34	SETDB1 (ENSCJAG00000006972) #37	CERS2 (ENSCJAG00000007043)
Mas night monkey	MODERN SPECIES	784	H2BC21 (ENSANAG00000020035)	H2AC20 (ENSANAG00000000357) #7	H2AC21 (ENSANAG00000018246) #8	SV2A (ENSANAG00000028972) #10	SF3B4 (ENSANAG00000031025) #11	MTMR11 (ENSANAG00000019298) #12	OTUD7B (ENSANAG00000021683) #13	VPS45 (ENSANAG00000034854) #14	PLEKHO1 (ENSANAG00000036370) #15	ENSANAG00000029309 #16	CA14 (ENSANAG00000026566) #17	APH1A (ENSANAG00000030676) #18	C1orf54 (ENSANAG00000023731) #19	CIART (ENSANAG00000030418) #20	ENSANAG00000026132 #21	PRPF3 (ENSANAG00000026138) #22	RPRD2 (ENSANAG00000019468) #23	TARS2 (ENSANAG00000019620) #24	ECM1 (ENSANAG00000031765) #25	ADAMTSL4 (ENSANAG00000019112) #27	ENSANAG00000021748 #28	ENSANAG00000003718	ENSANAG00000029931 ##29	GOLPH3L (ENSANAG00000020389) #30	HORMAD1 (ENSANAG00000021070) #31	CTSS (ENSANAG00000027610) #32	CTSK (ENSANAG00000037073) #33	ARNT (ENSANAG00000021110) #34	ENSANAG00000035985	CTXND2 (ENSANAG00000007098) #36	SETDB1 (ENSANAG00000001819) #37
Tarsier	MODERN SPECIES	5369								VPS45 (ENSTSYG00000008737) #14	PLEKHO1 (ENSTSYG00000005293) #15	ANP32E (ENSTSYG00000004463) #16	CA14 (ENSTSYG00000012164) #17	APH1A (ENSTSYG00000012166) #18	CUNH1orf54 (ENSTSYG00000008908) #19	CIART (ENSTSYG00000006895) #20	MRPS21 (ENSTSYG00000019342) #21	PRPF3 (ENSTSYG00000001383) #22	RPRD2 (ENSTSYG00000010106) #23	TARS2 (ENSTSYG00000003903) #24	ECM1 (ENSTSYG00000026093) #25
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Bushbaby	MODERN SPECIES	289	ENSOGAG00000027485	ENSOGAG00000006255	H2AC20 (ENSOGAG00000006256) #7	H2AC21 (ENSOGAG00000006258) #8	BOLA1 (ENSOGAG00000032964) #9	SV2A (ENSOGAG00000006260) #10	SF3B4 (ENSOGAG00000006265) #11	MTMR11 (ENSOGAG00000006266) #12	OTUD7B (ENSOGAG00000030526) #13	VPS45 (ENSOGAG00000006271) #14	PLEKHO1 (ENSOGAG00000006275) #15	ANP32E (ENSOGAG00000004841) #16	CA14 (ENSOGAG00000004842) #17	APH1A (ENSOGAG00000004843) #18	CIART (ENSOGAG00000004846) #20	PRPF3 (ENSOGAG00000005352) #22	ENSOGAG00000028162	RPRD2 (ENSOGAG00000029308) #23	TARS2 (ENSOGAG00000005360) #24	ECM1 (ENSOGAG00000005365) #25	ADAMTSL4 (ENSOGAG00000006696) #27	MCL1 (ENSOGAG00000016421) #28	ENSA (ENSOGAG00000005863) #29	GOLPH3L (ENSOGAG00000029017) #30	HORMAD1 (ENSOGAG00000005640) #31	CTSS (ENSOGAG00000014743) #32	CTSK (ENSOGAG00000004519) #33	ARNT (ENSOGAG00000004523) #34	ENSOGAG00000024502	SETDB1 (ENSOGAG00000010320) #37	CERS2 (ENSOGAG00000010325)
Lemuriformes	ANCESTRAL SPECIES	11		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b.c.a #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Mouse lemur	MODERN SPECIES	11	H2BC21 (ENSMICG00000044053)	SV2A (ENSMICG00000000293) #10	SF3B4 (ENSMICG00000044961) #11	MTMR11 (ENSMICG00000000298) #12	OTUD7B (ENSMICG00000047179) #13	ENSMICG00000035294	VPS45 (ENSMICG00000015188) #14	PLEKHO1 (ENSMICG00000027313) #15	ANP32E (ENSMICG00000015265) #16	ENSMICG00000034870	CA14 (ENSMICG00000045466) #17	APH1A (ENSMICG00000015279) #18	C1orf54 (ENSMICG00000015318) #19	CIART (ENSMICG00000015355) #20	ENSMICG00000046505 #21	PRPF3 (ENSMICG00000015386) #22	RPRD2 (ENSMICG00000007991) #23	TARS2 (ENSMICG00000008016) #24	ECM1 (ENSMICG00000044220) #25	ADAMTSL4 (ENSMICG00000008061) #27	MCL1 (ENSMICG00000034250) #28	ENSMICG00000029534	ENSA (ENSMICG00000004996) #29	GOLPH3L (ENSMICG00000027785) #30	HORMAD1 (ENSMICG00000036889) #31	ENSMICG00000027297	CTSS (ENSMICG00000032451) #32	CTSK (ENSMICG00000005853) #33	ARNT (ENSMICG00000005872) #34	ENSMICG00000034737	CTXND2 (ENSMICG00000044474) #36
Lemuriformes_a	ANCESTRAL SPECIES	19	ENSGT01100000263559.A.f.e	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b.c.a #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Coquerels sifaka	MODERN SPECIES	750	ENSPCOG00000012693	H2BC21 (ENSPCOG00000010375)	H2AC20 (ENSPCOG00000011857) #7	SV2A (ENSPCOG00000018151) #10	SF3B4 (ENSPCOG00000015399) #11	MTMR11 (ENSPCOG00000027870) #12	OTUD7B (ENSPCOG00000028177) #13	VPS45 (ENSPCOG00000011875) #14	PLEKHO1 (ENSPCOG00000027826) #15	ANP32E (ENSPCOG00000022218) #16	CA14 (ENSPCOG00000025811) #17	APH1A (ENSPCOG00000016266) #18	C1orf54 (ENSPCOG00000006128) #19	CIART (ENSPCOG00000018797) #20	ENSPCOG00000023504 #21	PRPF3 (ENSPCOG00000013828) #22	ENSPCOG00000022424	RPRD2 (ENSPCOG00000015902) #23	TARS2 (ENSPCOG00000017247) #24	ECM1 (ENSPCOG00000027232) #25	ADAMTSL4 (ENSPCOG00000010721) #27	ENSPCOG00000025226 #28	ENSA (ENSPCOG00000015526) #29	GOLPH3L (ENSPCOG00000019149) #30	HORMAD1 (ENSPCOG00000026567) #31	CTSS (ENSPCOG00000015772) #32	CTSK (ENSPCOG00000022303) #33	ARNT (ENSPCOG00000028373) #34	CTXND2 (ENSPCOG00000010066) #36	SETDB1 (ENSPCOG00000027869) #37	CERS2 (ENSPCOG00000020561)
Greater bamboo lemur	MODERN SPECIES	2653																PRPF3 (ENSPSMG00000004868) #22
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Tree shrew	MODERN SPECIES	724																PRPF3 (ENSTBEG00000014072) #22
Glires	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Rodentia	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Hystricomorpha	ANCESTRAL SPECIES	23	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Hystricomorpha_a	ANCESTRAL SPECIES	59	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00940000164936	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835	ENSGT00390000016607.b
Guinea pig	MODERN SPECIES	2	H2AC20 (ENSCPOG00000036942) #7	H2AC21 (ENSCPOG00000030869) #8	BOLA1 (ENSCPOG00000010247) #9	SV2A (ENSCPOG00000010250) #10	SF3B4 (ENSCPOG00000008267) #11	MTMR11 (ENSCPOG00000008271) #12	OTUD7B (ENSCPOG00000001517) #13	VPS45 (ENSCPOG00000002536) #14	PLEKHO1 (ENSCPOG00000021117) #15	ANP32E (ENSCPOG00000013941) #16	CA14 (ENSCPOG00000006079) #17	APH1A (ENSCPOG00000006509) #18	C1orf54 (ENSCPOG00000026169) #19	ENSCPOG00000035575	MRPS21 (ENSCPOG00000020443) #21	PRPF3 (ENSCPOG00000008068) #22	RPRD2 (ENSCPOG00000040179) #23	ENSCPOG00000010586 #24	ECM1 (ENSCPOG00000010599) #25	ADAMTSL4 (ENSCPOG00000011954) #27	MCL1 (ENSCPOG00000040407) #28	ENSA (ENSCPOG00000033807) #29	GOLPH3L (ENSCPOG00000005605) #30	HORMAD1 (ENSCPOG00000006235) #31	CTSS (ENSCPOG00000010629) #32	CTSK (ENSCPOG00000023854) #33	Arnt (ENSCPOG00000014578) #34	SETDB1 (ENSCPOG00000001632) #37	CERS2 (ENSCPOG00000001637)	ANXA9 (ENSCPOG00000001639)	MINDY1 (ENSCPOG00000001640)
Hystricomorpha_b	ANCESTRAL SPECIES	79	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00940000164936	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00900000143229	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835	ENSGT00390000016607.b
Degu	DUPLICATION
Degu	MODERN SPECIES	89	H2AC21 (ENSODEG00000019872) #8	BOLA1 (ENSODEG00000020128) #9	SV2A (ENSODEG00000011688) #10	MTMR11 (ENSODEG00000012623) #12	OTUD7B (ENSODEG00000011926) #13	ENSODEG00000019951	VPS45 (ENSODEG00000012615) #14	PLEKHO1 (ENSODEG00000011477) #15	ENSODEG00000013093 #16	CA14 (ENSODEG00000012540) #17	APH1A (ENSODEG00000011643) #18	ENSODEG00000013067 #19	ENSODEG00000012686	ENSODEG00000013089	ENSODEG00000011678 #21	ENSODEG00000011363 #22	RPRD2 (ENSODEG00000012617) #23	TARS2 (ENSODEG00000011883) #24	ECM1 (ENSODEG00000011744) #25	ENSODEG00000013487 #27	ENSODEG00000011170 #29	GOLPH3L (ENSODEG00000011029) #30	HORMAD1 (ENSODEG00000012417) #31	CTSS (ENSODEG00000010580) #32	ENSODEG00000012573 #33	ENSODEG00000011559 #34	ENSODEG00000012445	ENSODEG00000012710	SETDB1 (ENSODEG00000012471) #37	CERS2 (ENSODEG00000012022)	ANXA9 (ENSODEG00000011014)
Degu	MODERN SPECIES	53	ENSODEG00000011527	ENSODEG00000019923	ENSODEG00000011838	ENSODEG00000019857	POU2AF2 (ENSODEG00000011866)	POU2AF3 (ENSODEG00000012452)	POU2AF1 (ENSODEG00000013999)	ENSODEG00000014568	HOATZ (ENSODEG00000011858)	LAYN (ENSODEG00000010958)	ENSODEG00000010835	PPP2R1B (ENSODEG00000010197)	ALG9 (ENSODEG00000010112)	FDXACB1 (ENSODEG00000010360)	CFAP68 (ENSODEG00000011045)	ENSODEG00000014412 #22	ENSODEG00000010416	ENSODEG00000010149	AEBP2 (ENSODEG00000010983)	PLEKHA5 (ENSODEG00000010352)	CAPZA3 (ENSODEG00000019743)	PLCZ1 (ENSODEG00000010466)	ENSODEG00000010874	RERGL (ENSODEG00000009768)	ENSODEG00000019835	LMO3 (ENSODEG00000009624)	ENSODEG00000012530	SLC15A5 (ENSODEG00000011667)	DERA (ENSODEG00000011034)	ENSODEG00000010600	ENSODEG00000009964
Long-tailed chinchilla	MODERN SPECIES	120	H2AC20 (ENSCLAG00000017761) #7	H2AC21 (ENSCLAG00000017864) #8	BOLA1 (ENSCLAG00000014314) #9	SV2A (ENSCLAG00000014270) #10	SF3B4 (ENSCLAG00000015851) #11	MTMR11 (ENSCLAG00000014280) #12	OTUD7B (ENSCLAG00000015021) #13	VPS45 (ENSCLAG00000013589) #14	PLEKHO1 (ENSCLAG00000011850) #15	ANP32E (ENSCLAG00000016237) #16	CA14 (ENSCLAG00000015749) #17	APH1A (ENSCLAG00000013532) #18	C1orf54 (ENSCLAG00000012077) #19	ENSCLAG00000011743	MRPS21 (ENSCLAG00000013383) #21	PRPF3 (ENSCLAG00000015009) #22	RPRD2 (ENSCLAG00000013296) #23	TARS2 (ENSCLAG00000017274) #24	ECM1 (ENSCLAG00000016478) #25	ADAMTSL4 (ENSCLAG00000013321) #27	ENSA (ENSCLAG00000013424) #29	GOLPH3L (ENSCLAG00000013290) #30	HORMAD1 (ENSCLAG00000012872) #31	CTSS (ENSCLAG00000012118) #32
Naked mole-rat female	MODERN SPECIES	10	SV2A (ENSHGLG00000011320) #10	SF3B4 (ENSHGLG00000012360) #11	MTMR11 (ENSHGLG00000013532) #12	OTUD7B (ENSHGLG00000019136) #13	VPS45 (ENSHGLG00000018897) #14	PLEKHO1 (ENSHGLG00000046314) #15	ENSHGLG00000015344	ENSHGLG00000005468 #16	ENSHGLG00000032045	CA14 (ENSHGLG00000035588) #17	APH1A (ENSHGLG00000009612) #18	C1orf54 (ENSHGLG00000016156) #19	ENSHGLG00000045708	CIART (ENSHGLG00000016271) #20	MRPS21 (ENSHGLG00000016350) #21	PRPF3 (ENSHGLG00000016569) #22	RPRD2 (ENSHGLG00000013969) #23	TARS2 (ENSHGLG00000009219) #24	ECM1 (ENSHGLG00000010310) #25	MCL1 (ENSHGLG00000012559) #28	ENSHGLG00000013275	ENSHGLG00000038606	ENSA (ENSHGLG00000015451) #29	ENSHGLG00000049426	GOLPH3L (ENSHGLG00000042052) #30	HORMAD1 (ENSHGLG00000013087) #31	ENSHGLG00000038892 #32	ENSHGLG00000041980	ENSHGLG00000018535	HMGCS2 (ENSHGLG00000016719)	ENSHGLG00000016686
Sciuridae	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028.z #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.i.b #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413.q.b #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Marmotini	ANCESTRAL SPECIES	33	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.u #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028.z #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.i.b #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00940000164936	ENSGT00500000045038.r #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413.q.b #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Marmotini_b	ANCESTRAL SPECIES	77	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.u #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028.z #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.i.b #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00940000164936	ENSGT00500000045038.r #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413.q.b #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Arctic ground squirrel	MODERN SPECIES	298	H2BC21 (ENSUPAG00010001528)	H2AC20 (ENSUPAG00010001531) #7	H2AC21 (ENSUPAG00010001539) #8	ENSUPAG00010001547 #9	SV2A (ENSUPAG00010001558) #10	SF3B4 (ENSUPAG00010001576) #11	MTMR11 (ENSUPAG00010001597) #12	OTUD7B (ENSUPAG00010001643) #13	VPS45 (ENSUPAG00010001671) #14	PLEKHO1 (ENSUPAG00010001743) #15	ENSUPAG00010001759 #16	CA14 (ENSUPAG00010001770) #17	APH1A (ENSUPAG00010001823) #18	C1orf54 (ENSUPAG00010001839) #19	CIART (ENSUPAG00010001847) #20	PRPF3 (ENSUPAG00010001860) #22	RPRD2 (ENSUPAG00010001879) #23	TARS2 (ENSUPAG00010001943) #24	ECM1 (ENSUPAG00010002264) #25	ADAMTSL4 (ENSUPAG00010002294) #27	MCL1 (ENSUPAG00010002404) #28	ENSA (ENSUPAG00010002412) #29	HORMAD1 (ENSUPAG00010002435) #31	CTSS (ENSUPAG00010002451) #32	CTSK (ENSUPAG00010002778) #33	ARNT (ENSUPAG00010002789) #34	CTXND2 (ENSUPAG00010002982) #36	SETDB1 (ENSUPAG00010002991) #37	CERS2 (ENSUPAG00010003717)	ANXA9 (ENSUPAG00010003775)	MINDY1 (ENSUPAG00010003812)
Squirrel	MODERN SPECIES	180	H2BC21 (ENSSTOG00000028429)	H2AC20 (ENSSTOG00000025400) #7	H2AC21 (ENSSTOG00000021582) #8	SV2A (ENSSTOG00000006537) #10	ENSSTOG00000000684 #11	MTMR11 (ENSSTOG00000006589) #12	OTUD7B (ENSSTOG00000026621) #13	VPS45 (ENSSTOG00000014236) #14	PLEKHO1 (ENSSTOG00000014249) #15	ENSSTOG00000004170 #16	CA14 (ENSSTOG00000027815) #17	APH1A (ENSSTOG00000006041) #18	C1orf54 (ENSSTOG00000006055) #19	ENSSTOG00000024097	ENSSTOG00000019516 #21	PRPF3 (ENSSTOG00000001889) #22	RPRD2 (ENSSTOG00000001895) #23	TARS2 (ENSSTOG00000008311) #24	ECM1 (ENSSTOG00000008340) #25	ADAMTSL4 (ENSSTOG00000024198) #27	MCL1 (ENSSTOG00000027465) #28	ENSA (ENSSTOG00000002742) #29	GOLPH3L (ENSSTOG00000002747) #30	HORMAD1 (ENSSTOG00000002768) #31	CTSS (ENSSTOG00000021432) #32	CTSK (ENSSTOG00000013868) #33	ARNT (ENSSTOG00000013876) #34	SETDB1 (ENSSTOG00000006770) #37	CERS2 (ENSSTOG00000006797)	ANXA9 (ENSSTOG00000006824)	MINDY1 (ENSSTOG00000006840)
Alpin marmot	MODERN SPECIES	85	ENSMMMG00000019638	ENSMMMG00000019631	H2BC21 (ENSMMMG00000019629)	H2AC20 (ENSMMMG00000019626) #7	SV2A (ENSMMMG00000019622) #10	ENSMMMG00000019615 #11	MTMR11 (ENSMMMG00000019604) #12	OTUD7B (ENSMMMG00000019569) #13	VPS45 (ENSMMMG00000019551) #14	PLEKHO1 (ENSMMMG00000019549) #15	ENSMMMG00000019537 #16	CA14 (ENSMMMG00000019528) #17	APH1A (ENSMMMG00000019524) #18	C1orf54 (ENSMMMG00000019516) #19	CIART (ENSMMMG00000019509) #20	PRPF3 (ENSMMMG00000019495) #22	RPRD2 (ENSMMMG00000019468) #23	TARS2 (ENSMMMG00000019396) #24	ECM1 (ENSMMMG00000019374) #25	ADAMTSL4 (ENSMMMG00000019345) #27	ENSMMMG00000019337 #29	GOLPH3L (ENSMMMG00000019322) #30	HORMAD1 (ENSMMMG00000019288) #31	CTSS (ENSMMMG00000019262) #32	CTSK (ENSMMMG00000019259) #33	ARNT (ENSMMMG00000019205) #34	CTXND2 (ENSMMMG00000019184) #36	SETDB1 (ENSMMMG00000019144) #37	CERS2 (ENSMMMG00000019137)	ANXA9 (ENSMMMG00000019113)	MINDY1 (ENSMMMG00000019104)
Eurasian red squirrel	MODERN SPECIES		H2AC21 (ENSSVLG00005000146) #8	BOLA1 (ENSSVLG00005000149) #9	SV2A (ENSSVLG00005000231) #10	SF3B4 (ENSSVLG00005000373) #11	MTMR11 (ENSSVLG00005000407) #12	OTUD7B (ENSSVLG00005000477) #13	ENSSVLG00005000516	ENSSVLG00005000542 #14	PLEKHO1 (ENSSVLG00005000612) #15	ENSSVLG00005000716 #16	CA14 (ENSSVLG00005000883) #17	APH1A (ENSSVLG00005000921) #18	C1orf54 (ENSSVLG00005000974) #19	CIART (ENSSVLG00005000997) #20	MRPS21 (ENSSVLG00005001010) #21	PRPF3 (ENSSVLG00005001025) #22	RPRD2 (ENSSVLG00005001061) #23	TARS2 (ENSSVLG00005001101) #24	ECM1 (ENSSVLG00005001143) #25	ADAMTSL4 (ENSSVLG00005001195) #27	MCL1 (ENSSVLG00005001232) #28	ENSSVLG00005001308 #29	ENSSVLG00005001356	GOLPH3L (ENSSVLG00005001367) #30	HORMAD1 (ENSSVLG00005001438) #31	ENSSVLG00005001503	CTSS (ENSSVLG00005001527) #32	CTSK (ENSSVLG00005001562) #33	ARNT (ENSSVLG00005001590) #34	CTXND2 (ENSSVLG00005001652) #36	SETDB1 (ENSSVLG00005001698) #37
Rodentia_B	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Muroidea	ANCESTRAL SPECIES	6	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.u #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.u #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.t.b #16	ENSGT00950000182907.a.a.u #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.u #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835	ENSGT00390000016607.b
Cricetinae	ANCESTRAL SPECIES	12	ENSGT01100000263506.a.e.b	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.t.b #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.u #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835	ENSGT00390000016607.b
Chinese hamster chok1gshd	MODERN SPECIES	66	H2ac21 (ENSCGRG00001011919) #8	Bola1 (ENSCGRG00001011268) #9	Sv2a (ENSCGRG00001020508) #10	Sf3b4 (ENSCGRG00001003590) #11	Mtmr11 (ENSCGRG00001016961) #12	Otud7b (ENSCGRG00001023406) #13	Vps45 (ENSCGRG00001024791) #14	Plekho1 (ENSCGRG00001011990) #15	ENSCGRG00001017709 #16	ENSCGRG00001022251	Car14 (ENSCGRG00001001363) #17	Aph1a (ENSCGRG00001024346) #18	BC028528 (ENSCGRG00001011710) #19	Ciart (ENSCGRG00001021140) #20	ENSCGRG00001015258 #21	Prpf3 (ENSCGRG00001019100) #22	Rprd2 (ENSCGRG00001021587) #23	Tars2 (ENSCGRG00001023517) #24	Ecm1 (ENSCGRG00001009335) #25	ENSCGRG00001003470	Adamtsl4 (ENSCGRG00001017255) #27	Mcl1 (ENSCGRG00001017446) #28	Ensa (ENSCGRG00001022170) #29	Golph3l (ENSCGRG00001000763) #30	Hormad1 (ENSCGRG00001016359) #31	Ctss (ENSCGRG00001009630) #32	Ctsk (ENSCGRG00001018122) #33	Arnt (ENSCGRG00001020065) #34	ENSCGRG00001022347	Ctxnd2 (ENSCGRG00001010032) #36	Setdb1 (ENSCGRG00001010822) #37
Golden Hamster	MODERN SPECIES	782	ENSMAUG00000005554	ENSMAUG00000005836	Bola1 (ENSMAUG00000020828) #9	Sv2a (ENSMAUG00000019595) #10	Sf3b4 (ENSMAUG00000015266) #11	Mtmr11 (ENSMAUG00000017521) #12	Otud7b (ENSMAUG00000017029) #13	Vps45 (ENSMAUG00000020648) #14	Plekho1 (ENSMAUG00000017313) #15	Anp32e (ENSMAUG00000011419) #16	Car14 (ENSMAUG00000019851) #17	Aph1a (ENSMAUG00000009007) #18	BC028528 (ENSMAUG00000009366) #19	ENSMAUG00000001664	ENSMAUG00000014535 #21	Prpf3 (ENSMAUG00000017112) #22	Rprd2 (ENSMAUG00000019875) #23	Tars2 (ENSMAUG00000008184) #24	Ecm1 (ENSMAUG00000016262) #25	Adamtsl4 (ENSMAUG00000014851) #27	Mcl1 (ENSMAUG00000007430) #28	Ensa (ENSMAUG00000008619) #29	Golph3l (ENSMAUG00000012523) #30	Hormad1 (ENSMAUG00000020053) #31	Ctss (ENSMAUG00000021301) #32	Ctsk (ENSMAUG00000019242) #33	ENSMAUG00000009522 #34	Setdb1 (ENSMAUG00000021391) #37	Cers2 (ENSMAUG00000015178)	Anxa9 (ENSMAUG00000021724)	Mindy1 (ENSMAUG00000020108)
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.u #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.u #21	ENSGT00500000045038.v.a.b #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835	ENSGT00390000016607.b
Northern American deer mouse	MODERN SPECIES	19	Bola1 (ENSPEMG00000008051) #9	Sv2a (ENSPEMG00000008887) #10	Sf3b4 (ENSPEMG00000017568) #11	Mtmr11 (ENSPEMG00000014402) #12	Otud7b (ENSPEMG00000027312) #13	ENSPEMG00000030134	Vps45 (ENSPEMG00000018774) #14	Plekho1 (ENSPEMG00000015477) #15	Anp32e (ENSPEMG00000000742) #16	Car14 (ENSPEMG00000011085) #17	Aph1a (ENSPEMG00000015896) #18	BC028528 (ENSPEMG00000009975) #19	Ciart (ENSPEMG00000002076) #20	ENSPEMG00000013980 #21	ENSPEMG00000030510	Prpf3 (ENSPEMG00000011672) #22	ENSPEMG00000024405	Rprd2 (ENSPEMG00000013381) #23	Tars2 (ENSPEMG00000014203) #24	Ecm1 (ENSPEMG00000016753) #25	Adamtsl4 (ENSPEMG00000008970) #27	ENSPEMG00000031072 #28	Ensa (ENSPEMG00000024023) #29	Golph3l (ENSPEMG00000029486) #30	Hormad1 (ENSPEMG00000012403) #31	Ctss (ENSPEMG00000009697) #32	Ctsk (ENSPEMG00000001057) #33	Arnt (ENSPEMG00000029682) #34	Setdb1 (ENSPEMG00000010553) #37	Cers2 (ENSPEMG00000016044)	ENSPEMG00000030061
Prairie vole	MODERN SPECIES	8	ENSMOCG00000007571	H2ac21 (ENSMOCG00000008450) #8	Bola1 (ENSMOCG00000016236) #9	Sv2a (ENSMOCG00000000375) #10	ENSMOCG00000013658 #11	Mtmr11 (ENSMOCG00000017943) #12	Otud7b (ENSMOCG00000005067) #13	Vps45 (ENSMOCG00000014888) #14	Plekho1 (ENSMOCG00000016679) #15	Anp32e (ENSMOCG00000002258) #16	Car14 (ENSMOCG00000014152) #17	Aph1a (ENSMOCG00000022720) #18	BC028528 (ENSMOCG00000003466) #19	Ciart (ENSMOCG00000020599) #20	ENSMOCG00000004675 #21	Prpf3 (ENSMOCG00000000242) #22	ENSMOCG00000013494 #23	Tars2 (ENSMOCG00000018432) #24	Ecm1 (ENSMOCG00000019294) #25	Adamtsl4 (ENSMOCG00000008356) #27	Mcl1 (ENSMOCG00000000395) #28	Ensa (ENSMOCG00000017464) #29	Golph3l (ENSMOCG00000018491) #30	Hormad1 (ENSMOCG00000018601) #31	Ctss (ENSMOCG00000022241) #32	Ctsk (ENSMOCG00000022513) #33	Arnt (ENSMOCG00000001627) #34	Setdb1 (ENSMOCG00000017407) #37	Cers2 (ENSMOCG00000001144)	Anxa9 (ENSMOCG00000000205)	Mindy1 (ENSMOCG00000021873)
Murinae	ANCESTRAL SPECIES	5	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.u #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Mus	ANCESTRAL SPECIES	7	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.u #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.u #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413.v #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.u #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103.a.a #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413.v #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Mouse	MODERN SPECIES	12	H2ac20 (ENSMUSG00000068855) #7	H2ac21 (ENSMUSG00000063689) #8	Bola1 (ENSMUSG00000015943) #9	Sv2a (ENSMUSG00000038486) #10	Sf3b4 (ENSMUSG00000068856) #11	Mtmr11 (ENSMUSG00000045934) #12	Otud7b (ENSMUSG00000038495) #13	Vps45 (ENSMUSG00000015747) #14	Plekho1 (ENSMUSG00000015745) #15	Anp32e (ENSMUSG00000015749) #16	Car14 (ENSMUSG00000038526) #17	Aph1a (ENSMUSG00000015750) #18	BC028528 (ENSMUSG00000038543) #19	Ciart (ENSMUSG00000038550) #20	Mrps21 (ENSMUSG00000054312) #21	Prpf3 (ENSMUSG00000015748) #22	Rprd2 (ENSMUSG00000028106) #23	Tars2 (ENSMUSG00000028107) #24	Ecm1 (ENSMUSG00000028108) #25	Adamtsl4 (ENSMUSG00000015850) #27	Mcl1 (ENSMUSG00000038612) #28	Ensa (ENSMUSG00000038619) #29	Golph3l (ENSMUSG00000046519) #30	Hormad1 (ENSMUSG00000028109) #31	Ctss (ENSMUSG00000038642) #32	Ctsk (ENSMUSG00000028111) #33	Arnt (ENSMUSG00000015522) #34	Ctxnd2 (ENSMUSG00000105734) #36	Setdb1 (ENSMUSG00000015697) #37	Cers2 (ENSMUSG00000015714)	Anxa9 (ENSMUSG00000015702)
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.u #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103.a.a #19	ENSGT00390000018360 #20	ENSGT00500000045038.t #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413.v #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000170759	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a
Steppe mouse	MODERN SPECIES	3111	ENSMSIG00000008164	ENSMSIG00000008132	Bola1 (ENSMSIG00000008109) #9	Sv2a (ENSMSIG00000008068) #10	Sf3b4 (ENSMSIG00000008017) #11	Mtmr11 (ENSMSIG00000007965) #12	Otud7b (ENSMSIG00000007920) #13	Vps45 (ENSMSIG00000007881) #14	ENSMSIG00000007830 #15	Anp32e (ENSMSIG00000007657) #16	Car14 (ENSMSIG00000007599) #17	ENSMSIG00000007562 #18	BC028528 (ENSMSIG00000007460) #19	ENSMSIG00000007429 #20	ENSMSIG00000007397 #21	Prpf3 (ENSMSIG00000007342) #22	Rprd2 (ENSMSIG00000007289) #23	Tars2 (ENSMSIG00000006741) #24	Ecm1 (ENSMSIG00000006669) #25	Adamtsl4 (ENSMSIG00000006628) #27	Mcl1 (ENSMSIG00000006604) #28	Ensa (ENSMSIG00000006584) #29	Golph3l (ENSMSIG00000006388) #30	ENSMSIG00000006052 #31	Ctss (ENSMSIG00000005997) #32	Ctsk (ENSMSIG00000005966) #33	Arnt (ENSMSIG00000005683) #34	ENSMSIG00000005664	ENSMSIG00000005661	Ctxnd2 (ENSMSIG00000005609) #36	Setdb1 (ENSMSIG00000005513) #37
spretus	MODERN SPECIES	12	H2ac20 (MGP_SPRETEiJ_G0026313) #7	H2ac21 (MGP_SPRETEiJ_G0026312) #8	Bola1 (MGP_SPRETEiJ_G0026311) #9	Sv2a (MGP_SPRETEiJ_G0026310) #10	Sf3b4 (MGP_SPRETEiJ_G0026309) #11	Mtmr11 (MGP_SPRETEiJ_G0026308) #12	Otud7b (MGP_SPRETEiJ_G0026307) #13	Vps45 (MGP_SPRETEiJ_G0026306) #14	Plekho1 (MGP_SPRETEiJ_G0026305) #15	Anp32e (MGP_SPRETEiJ_G0026304) #16	Car14 (MGP_SPRETEiJ_G0026303) #17	Aph1a (MGP_SPRETEiJ_G0026302) #18	BC028528 (MGP_SPRETEiJ_G0026301) #19	Ciart (MGP_SPRETEiJ_G0026300) #20	Mrps21 (MGP_SPRETEiJ_G0026299) #21	Prpf3 (MGP_SPRETEiJ_G0026298) #22	Rprd2 (MGP_SPRETEiJ_G0026297) #23	Tars2 (MGP_SPRETEiJ_G0026296) #24	Ecm1 (MGP_SPRETEiJ_G0026295) #25	Adamtsl4 (MGP_SPRETEiJ_G0026294) #27	Mcl1 (MGP_SPRETEiJ_G0026293) #28	Ensa (MGP_SPRETEiJ_G0026292) #29	MGP_SPRETEiJ_G0026291 ##30	MGP_SPRETEiJ_G0026290 #31	Ctss (MGP_SPRETEiJ_G0026289) #32	Ctsk (MGP_SPRETEiJ_G0026288) #33	Arnt (MGP_SPRETEiJ_G0026287) #34	Cers2 (MGP_SPRETEiJ_G0026285)	Anxa9 (MGP_SPRETEiJ_G0026284)	Mindy1 (MGP_SPRETEiJ_G0026283)	Prune1 (MGP_SPRETEiJ_G0026282)
Ryukyu mouse	MODERN SPECIES	12	H2ac20 (MGP_CAROLIEiJ_G0025369) #7	H2ac21 (MGP_CAROLIEiJ_G0025368) #8	Bola1 (MGP_CAROLIEiJ_G0025367) #9	Sv2a (MGP_CAROLIEiJ_G0025366) #10	Sf3b4 (MGP_CAROLIEiJ_G0025365) #11	Mtmr11 (MGP_CAROLIEiJ_G0025364) #12	Otud7b (MGP_CAROLIEiJ_G0025363) #13	Vps45 (MGP_CAROLIEiJ_G0025362) #14	Plekho1 (MGP_CAROLIEiJ_G0025361) #15	Anp32e (MGP_CAROLIEiJ_G0025360) #16	Car14 (MGP_CAROLIEiJ_G0025359) #17	Aph1a (MGP_CAROLIEiJ_G0025358) #18	BC028528 (MGP_CAROLIEiJ_G0025357) #19	MGP_CAROLIEiJ_G0025356 #20	Mrps21 (MGP_CAROLIEiJ_G0025355) #21	Prpf3 (MGP_CAROLIEiJ_G0025354) #22	Rprd2 (MGP_CAROLIEiJ_G0025353) #23	Tars2 (MGP_CAROLIEiJ_G0025352) #24	Ecm1 (MGP_CAROLIEiJ_G0025351) #25	Adamtsl4 (MGP_CAROLIEiJ_G0025350) #27	Mcl1 (MGP_CAROLIEiJ_G0025349) #28	Ensa (MGP_CAROLIEiJ_G0025348) #29	MGP_CAROLIEiJ_G0025347 ##30	Hormad1 (MGP_CAROLIEiJ_G0025346) #31	Ctss (MGP_CAROLIEiJ_G0025345) #32	Ctsk (MGP_CAROLIEiJ_G0025344) #33	Arnt (MGP_CAROLIEiJ_G0025343) #34	Setdb1 (MGP_CAROLIEiJ_G0025342) #37	Cers2 (MGP_CAROLIEiJ_G0025341)	Anxa9 (MGP_CAROLIEiJ_G0025340)	Mindy1 (MGP_CAROLIEiJ_G0025339)
Shrew mouse	MODERN SPECIES	17	H2ac20 (MGP_PahariEiJ_G0026813) #7	H2ac21 (MGP_PahariEiJ_G0026812) #8	Bola1 (MGP_PahariEiJ_G0026811) #9	Sv2a (MGP_PahariEiJ_G0026810) #10	Sf3b4 (MGP_PahariEiJ_G0026809) #11	Mtmr11 (MGP_PahariEiJ_G0026808) #12	Otud7b (MGP_PahariEiJ_G0026807) #13	Vps45 (MGP_PahariEiJ_G0026806) #14	Plekho1 (MGP_PahariEiJ_G0026805) #15	MGP_PahariEiJ_G0026804 #16	Car14 (MGP_PahariEiJ_G0026803) #17	Aph1a (MGP_PahariEiJ_G0026802) #18	BC028528 (MGP_PahariEiJ_G0026801) #19	Ciart (MGP_PahariEiJ_G0026800) #20	Mrps21 (MGP_PahariEiJ_G0026799) #21	Prpf3 (MGP_PahariEiJ_G0026798) #22	Rprd2 (MGP_PahariEiJ_G0026797) #23	Tars2 (MGP_PahariEiJ_G0026796) #24	Ecm1 (MGP_PahariEiJ_G0026795) #25	Adamtsl4 (MGP_PahariEiJ_G0026794) #27	Mcl1 (MGP_PahariEiJ_G0026793) #28	Ensa (MGP_PahariEiJ_G0026792) #29	Golph3l (MGP_PahariEiJ_G0026791) #30	Hormad1 (MGP_PahariEiJ_G0026790) #31	Ctss (MGP_PahariEiJ_G0026789) #32	Ctsk (MGP_PahariEiJ_G0026788) #33	Arnt (MGP_PahariEiJ_G0026787) #34	Cers2 (MGP_PahariEiJ_G0026785)	Anxa9 (MGP_PahariEiJ_G0026784)	Mindy1 (MGP_PahariEiJ_G0026783)	Prune1 (MGP_PahariEiJ_G0026782)
Rat	MODERN SPECIES	11	ENSRNOG00000062927	Bola1 (ENSRNOG00000021185) #9	Sv2a (ENSRNOG00000021182) #10	Sf3b4 (ENSRNOG00000021181) #11	Mtmr11 (ENSRNOG00000021176) #12	Otud7b (ENSRNOG00000042068) #13	Vps45 (ENSRNOG00000021173) #14	Plekho1 (ENSRNOG00000021170) #15	RGD1562196 (ENSRNOG00000065202)	Anp32e (ENSRNOG00000021168) #16	Car14 (ENSRNOG00000023162) #17	Aph1a (ENSRNOG00000023816) #18	C2H1orf54 (ENSRNOG00000059750) #19	Ciart (ENSRNOG00000042717) #20	Mrps21 (ENSRNOG00000024845) #21	Prpf3 (ENSRNOG00000025629) #22	Rprd2 (ENSRNOG00000054294) #23	Tars2 (ENSRNOG00000057194) #24	Ecm1 (ENSRNOG00000021166) #25	Adamtsl4 (ENSRNOG00000049385) #27	Mcl1 (ENSRNOG00000063678) #28	Ensa (ENSRNOG00000048617) #29	Golph3l (ENSRNOG00000047620) #30	Hormad1 (ENSRNOG00000021160) #31	Ctss (ENSRNOG00000021157) #32	Ctsk (ENSRNOG00000021155) #33	Arnt (ENSRNOG00000031174) #34	Setdb1 (ENSRNOG00000021143) #37	Cers2 (ENSRNOG00000021138)	Anxa9 (ENSRNOG00000021134)	Mindy1 (ENSRNOG00000021131)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1243	Bola1 (ENSNGAG00000024327) #9	Sv2a (ENSNGAG00000024242) #10	Sf3b4 (ENSNGAG00000016337) #11	Mtmr11 (ENSNGAG00000015085) #12	Otud7b (ENSNGAG00000019612) #13	Vps45 (ENSNGAG00000001159) #14	ENSNGAG00000005098	Plekho1 (ENSNGAG00000002001) #15	Anp32e (ENSNGAG00000010494) #16	ENSNGAG00000023116	Car14 (ENSNGAG00000013264) #17	Aph1a (ENSNGAG00000019336) #18	BC028528 (ENSNGAG00000011340) #19	ENSNGAG00000009739	Mrps21 (ENSNGAG00000001847) #21	Prpf3 (ENSNGAG00000000910) #22	Rprd2 (ENSNGAG00000024252) #23	ENSNGAG00000024279 #24
Kangaroo rat	MODERN SPECIES	345	ENSDORG00000028335	H2ac20 (ENSDORG00000024205) #7	H2ac21 (ENSDORG00000024245) #8	Bola1 (ENSDORG00000016364) #9	Sv2a (ENSDORG00000016365) #10	Sf3b4 (ENSDORG00000016366) #11	Mtmr11 (ENSDORG00000016368) #12	Otud7b (ENSDORG00000005008) #13	Vps45 (ENSDORG00000005012) #14	Plekho1 (ENSDORG00000005015) #15	ENSDORG00000011690 #16	Aph1a (ENSDORG00000011694) #18	BC028528 (ENSDORG00000011695) #19	ENSDORG00000025269	Mrps21 (ENSDORG00000030111) #21	Prpf3 (ENSDORG00000008664) #22	Rprd2 (ENSDORG00000023813) #23	Tars2 (ENSDORG00000007569) #24	Ecm1 (ENSDORG00000007570) #25	Adamtsl4 (ENSDORG00000000397) #27	Mcl1 (ENSDORG00000011424) #28	Ensa (ENSDORG00000011425) #29	Golph3l (ENSDORG00000024987) #30	Hormad1 (ENSDORG00000008931) #31	Ctss (ENSDORG00000011000) #32	Ctsk (ENSDORG00000027450) #33	ENSDORG00000023883 #34	Setdb1 (ENSDORG00000006830) #37	Cers2 (ENSDORG00000006831)	Anxa9 (ENSDORG00000009615)	Mindy1 (ENSDORG00000007366)
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Rabbit	MODERN SPECIES	4	H2BC21 (ENSOCUG00000023535)	ENSOCUG00000037254	BOLA1 (ENSOCUG00000004609) #9	SV2A (ENSOCUG00000003894) #10	SF3B4 (ENSOCUG00000004614) #11	MTMR11 (ENSOCUG00000004616) #12	OTUD7B (ENSOCUG00000013924) #13	ENSOCUG00000014360 #14	PLEKHO1 (ENSOCUG00000006316) #15	ENSOCUG00000022805 #16	CA14 (ENSOCUG00000009032) #17	APH1A (ENSOCUG00000009037) #18	C1orf54 (ENSOCUG00000027251) #19	CIART (ENSOCUG00000009044) #20	ENSOCUG00000027120 #21	PRPF3 (ENSOCUG00000011760) #22	RPRD2 (ENSOCUG00000011770) #23	TARS2 (ENSOCUG00000031561) #24	ECM1 (ENSOCUG00000011786) #25	ADAMTSL4 (ENSOCUG00000000927) #27	MCL1 (ENSOCUG00000012152) #28	ENSOCUG00000003267 #29	GOLPH3L (ENSOCUG00000032306) #30	HORMAD1 (ENSOCUG00000003275) #31	CTSS (ENSOCUG00000011085) #32	CTSK (ENSOCUG00000011090) #33	ARNT (ENSOCUG00000013582) #34	CTXND2 (ENSOCUG00000030922) #36	SETDB1 (ENSOCUG00000003642) #37	CERS2 (ENSOCUG00000022419)	ANXA9 (ENSOCUG00000014955)
Pika	MODERN SPECIES	1824											ANP32E (ENSOPRG00000010058) #16	CA14 (ENSOPRG00000010068) #17	APH1A (ENSOPRG00000010094) #18	C1orf54 (ENSOPRG00000010110) #19	CIART (ENSOPRG00000010122) #20	PRPF3 (ENSOPRG00000010139) #22	RPRD2 (ENSOPRG00000010157) #23	TARS2 (ENSOPRG00000010194) #24	ECM1 (ENSOPRG00000010217) #25	ADAMTSL4 (ENSOPRG00000010235) #27	GOLPH3L (ENSOPRG00000010308) #30	ENSOPRG00000010315	ENSOPRG00000010319 ##31	CTSS (ENSOPRG00000010347) #32	CTSK (ENSOPRG00000010357) #33	ARNT (ENSOPRG00000010374) #34
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Eulipotyphla	ANCESTRAL SPECIES	120												ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00390000011497 #22
Common shrew	MODERN SPECIES	1386												CA14 (ENSSARG00000010988) #17	APH1A (ENSSARG00000011040) #18	C1orf54 (ENSSARG00000011048) #19	ENSSARG00000011056 #20	PRPF3 (ENSSARG00000011064) #22
Hedgehog	MODERN SPECIES	1898																PRPF3 (ENSEEUG00000007338) #22
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Suina	ANCESTRAL SPECIES	8	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Pig	MODERN SPECIES	12	H2AC20 (ENSSSCG00000034598) #7	H2AC21 (ENSSSCG00000063420) #8	BOLA1 (ENSSSCG00000006667) #9	SV2A (ENSSSCG00000006666) #10	SF3B4 (ENSSSCG00000006665) #11	MTMR11 (ENSSSCG00000006664) #12	OTUD7B (ENSSSCG00000006663) #13	VPS45 (ENSSSCG00000006661) #14	PLEKHO1 (ENSSSCG00000022784) #15	ANP32E (ENSSSCG00000035209) #16	CA14 (ENSSSCG00000027875) #17	APH1A (ENSSSCG00000028297) #18	C1orf54 (ENSSSCG00000045950) #19	CIART (ENSSSCG00000038374) #20	ENSSSCG00000052263 #21	PRPF3 (ENSSSCG00000030119) #22	RPRD2 (ENSSSCG00000030291) #23	TARS2 (ENSSSCG00000026395) #24	ECM1 (ENSSSCG00000029230) #25	ADAMTSL4 (ENSSSCG00000006651) #27	MCL1 (ENSSSCG00000039314) #28	ENSA (ENSSSCG00000006653) #29	ENSSSCG00000049503	GOLPH3L (ENSSSCG00000038558) #30	HORMAD1 (ENSSSCG00000006649) #31	CTSS (ENSSSCG00000006648) #32	CTSK (ENSSSCG00000052889) #33	ARNT (ENSSSCG00000006646) #34	CTXND2 (ENSSSCG00000057128) #36	SETDB1 (ENSSSCG00000006645) #37	CERS2 (ENSSSCG00000006644)
Chacoan peccary	MODERN SPECIES	29	H2AC21 (ENSCWAG00000010470) #8	BOLA1 (ENSCWAG00000010457) #9	SV2A (ENSCWAG00000010325) #10	SF3B4 (ENSCWAG00000010291) #11	MTMR11 (ENSCWAG00000009987) #12	OTUD7B (ENSCWAG00000009903) #13	ENSCWAG00000009861	VPS45 (ENSCWAG00000009712) #14	PLEKHO1 (ENSCWAG00000009593) #15	ANP32E (ENSCWAG00000009540) #16	CA14 (ENSCWAG00000009438) #17	APH1A (ENSCWAG00000009346) #18	C1orf54 (ENSCWAG00000009306) #19	CIART (ENSCWAG00000009100) #20	MRPS21 (ENSCWAG00000009071) #21	PRPF3 (ENSCWAG00000008995) #22	RPRD2 (ENSCWAG00000008913) #23	TARS2 (ENSCWAG00000008672) #24	ECM1 (ENSCWAG00000008573) #25	ADAMTSL4 (ENSCWAG00000008396) #27	MCL1 (ENSCWAG00000008263) #28	ENSCWAG00000008100 #29	GOLPH3L (ENSCWAG00000008042) #30	HORMAD1 (ENSCWAG00000007637) #31	CTSS (ENSCWAG00000007587) #32	CTSK (ENSCWAG00000007556) #33	ARNT (ENSCWAG00000007457) #34	CTXND2 (ENSCWAG00000007433) #36	SETDB1 (ENSCWAG00000007313) #37	CERS2 (ENSCWAG00000007281)	ANXA9 (ENSCWAG00000007232)
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Cetacea	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b.m #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00390000016607.b
Odontoceti	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b.m #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00390000016607.b
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b.m #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00390000016607.b
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b.m #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00390000016607.b
Monodontidae	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028.w.a #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b.m #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00950000183109.c.a.a.m.b.d	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a
Beluga whale	MODERN SPECIES	99	BOLA1 (ENSDLEG00000010185) #9	SV2A (ENSDLEG00000010159) #10	SF3B4 (ENSDLEG00000010135) #11	MTMR11 (ENSDLEG00000010078) #12	OTUD7B (ENSDLEG00000010038) #13	ENSDLEG00000010020 #14	VPS45 (ENSDLEG00000009999) #14	PLEKHO1 (ENSDLEG00000009972) #15	ANP32E (ENSDLEG00000009954) #16	CA14 (ENSDLEG00000009908) #17	ENSDLEG00000009879	APH1A (ENSDLEG00000009850) #18	ENSDLEG00000009839	CIART (ENSDLEG00000009825) #20	MRPS21 (ENSDLEG00000009817) #21	PRPF3 (ENSDLEG00000009787) #22	RPRD2 (ENSDLEG00000009754) #23	ECM1 (ENSDLEG00000009658) #24	ADAMTSL4 (ENSDLEG00000009315) #27	MCL1 (ENSDLEG00000009251) #28	ENSA (ENSDLEG00000009232) #29	GOLPH3L (ENSDLEG00000009214) #30	CTSS (ENSDLEG00000009183) #32	CTSK (ENSDLEG00000009129) #33	ARNT (ENSDLEG00000008978) #34	ENSDLEG00000008940	SETDB1 (ENSDLEG00000008865) #37	CERS2 (ENSDLEG00000008736)	MINDY1 (ENSDLEG00000008706)	PRUNE1 (ENSDLEG00000008668)	BNIPL (ENSDLEG00000008485)
Narwhal	MODERN SPECIES	304	H2AC20 (ENSMMNG00015000583) #7	H2AC21 (ENSMMNG00015000574) #8	BOLA1 (ENSMMNG00015000565) #9	SV2A (ENSMMNG00015000538) #10	SF3B4 (ENSMMNG00015000508) #11	MTMR11 (ENSMMNG00015000420) #12	OTUD7B (ENSMMNG00015000357) #13	ENSMMNG00015000303 #14	PLEKHO1 (ENSMMNG00015000265) #15	ANP32E (ENSMMNG00015000229) #16	CA14 (ENSMMNG00015000189) #17	APH1A (ENSMMNG00015000151) #18	C1orf54 (ENSMMNG00015000118) #19	CIART (ENSMMNG00015000077) #20	MRPS21 (ENSMMNG00015004720) #21	PRPF3 (ENSMMNG00015004709) #22	RPRD2 (ENSMMNG00015004667) #23	TARS2 (ENSMMNG00015004626) #24	ECM1 (ENSMMNG00015004604) #25	ADAMTSL4 (ENSMMNG00015004588) #27	MCL1 (ENSMMNG00015004577) #28	ENSA (ENSMMNG00015004565) #29	GOLPH3L (ENSMMNG00015004555) #30	HORMAD1 (ENSMMNG00015004509) #31	CTSS (ENSMMNG00015004454) #32	CTSK (ENSMMNG00015004429) #33	ARNT (ENSMMNG00015004336) #34	ENSMMNG00015004305	CTXND2 (ENSMMNG00015004301) #36	SETDB1 (ENSMMNG00015004269) #37	CERS2 (ENSMMNG00015004250)
Vaquita	MODERN SPECIES		H2BC21 (ENSPSNG00000001199)	H2AC20 (ENSPSNG00000001208) #7	H2AC21 (ENSPSNG00000001218) #8	BOLA1 (ENSPSNG00000001237) #9	SV2A (ENSPSNG00000001263) #10	SF3B4 (ENSPSNG00000001286) #11	MTMR11 (ENSPSNG00000001321) #12	OTUD7B (ENSPSNG00000001389) #13	VPS45 (ENSPSNG00000001453) #14	PLEKHO1 (ENSPSNG00000001496) #15	ANP32E (ENSPSNG00000001573) #16	CA14 (ENSPSNG00000001634) #17	ENSPSNG00000001681 #18	CIART (ENSPSNG00000001759) #20	MRPS21 (ENSPSNG00000001805) #21	PRPF3 (ENSPSNG00000001838) #22	RPRD2 (ENSPSNG00000001899) #23	TARS2 (ENSPSNG00000001970) #24	ECM1 (ENSPSNG00000002059) #25	ADAMTSL4 (ENSPSNG00000002117) #27	MCL1 (ENSPSNG00000002164) #28	ENSPSNG00000002192 #29	GOLPH3L (ENSPSNG00000002225) #30	HORMAD1 (ENSPSNG00000002291) #31	ENSPSNG00000002431	CTSS (ENSPSNG00000002456) #32	ENSPSNG00000002497	CTSK (ENSPSNG00000002537) #33	ARNT (ENSPSNG00000002599) #34	ENSPSNG00000002663	CTXND2 (ENSPSNG00000002678) #36
Dolphin	MODERN SPECIES	1299														CIART (ENSTTRG00000010611) #20	MRPS21 (ENSTTRG00000021389) #21	PRPF3 (ENSTTRG00000010616) #22	RPRD2 (ENSTTRG00000010621) #23	TARS2 (ENSTTRG00000010627) #24	ECM1 (ENSTTRG00000010632) #25
Sperm whale	MODERN SPECIES	15	H2AC20 (ENSPCTG00005011425) #7	H2AC21 (ENSPCTG00005011410) #8	BOLA1 (ENSPCTG00005011392) #9	SV2A (ENSPCTG00005011188) #10	SF3B4 (ENSPCTG00005011142) #11	MTMR11 (ENSPCTG00005010793) #12	OTUD7B (ENSPCTG00005010704) #13	VPS45 (ENSPCTG00005010502) #14	PLEKHO1 (ENSPCTG00005010430) #15	ANP32E (ENSPCTG00005010280) #16	CA14 (ENSPCTG00005010130) #17	APH1A (ENSPCTG00005010018) #18	C4H1orf54 (ENSPCTG00005009937) #19	CIART (ENSPCTG00005009880) #20	MRPS21 (ENSPCTG00005009845) #21	PRPF3 (ENSPCTG00005009677) #22	RPRD2 (ENSPCTG00005009512) #23	ENSPCTG00005009425	CTXND2 (ENSPCTG00005009405) #36	ARNT (ENSPCTG00005009289) #34	CTSK (ENSPCTG00005009239) #33	CTSS (ENSPCTG00005009137) #32	HORMAD1 (ENSPCTG00005008902) #31	GOLPH3L (ENSPCTG00005008868) #30	ENSA (ENSPCTG00005008741) #29	MCL1 (ENSPCTG00005008658) #28	PRUNE1 (ENSPCTG00005008633)	BNIPL (ENSPCTG00005008602)	C1orf56 (ENSPCTG00005008573)	CDC42SE1 (ENSPCTG00005008518)	MLLT11 (ENSPCTG00005020260)
Blue whale	MODERN SPECIES		H2AC20 (ENSBMSG00010003906) #7	H2AC21 (ENSBMSG00010003913) #8	BOLA1 (ENSBMSG00010003920) #9	SV2A (ENSBMSG00010003927) #10	SF3B4 (ENSBMSG00010003943) #11	MTMR11 (ENSBMSG00010003964) #12	OTUD7B (ENSBMSG00010004006) #13	VPS45 (ENSBMSG00010013898) #14	PLEKHO1 (ENSBMSG00010013986) #15	ANP32E (ENSBMSG00010014047) #16	CA14 (ENSBMSG00010014191) #17	ENSBMSG00010014245 #18	C1orf54 (ENSBMSG00010014318) #19	CIART (ENSBMSG00010014384) #20	MRPS21 (ENSBMSG00010014420) #21	PRPF3 (ENSBMSG00010014445) #22	RPRD2 (ENSBMSG00010014508) #23	TARS2 (ENSBMSG00010014680) #24	ECM1 (ENSBMSG00010014903) #25	ENSBMSG00010014950	ADAMTSL4 (ENSBMSG00010014975) #27	ENSBMSG00010015010 #28	ENSBMSG00010015076 #29	GOLPH3L (ENSBMSG00010015147) #30	HORMAD1 (ENSBMSG00010015193) #31	CTSS (ENSBMSG00010015415) #32	ENSBMSG00010015501	CTSK (ENSBMSG00010015531) #33	ARNT (ENSBMSG00010015560) #34	CTXND2 (ENSBMSG00010015619) #36	SETDB1 (ENSBMSG00010015648) #37
Pecora	ANCESTRAL SPECIES	2	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Yarkand deer	MODERN SPECIES	12	H2AC21 (ENSCHYG00000015023) #8	BOLA1 (ENSCHYG00000014998) #9	SV2A (ENSCHYG00000014801) #10	ENSCHYG00000014732 #11	MTMR11 (ENSCHYG00000014428) #12	ENSCHYG00000014343	OTUD7B (ENSCHYG00000014204) #13	VPS45 (ENSCHYG00000013592) #14	ENSCHYG00000013481 #15	ANP32E (ENSCHYG00000012932) #16	CA14 (ENSCHYG00000012847) #17	APH1A (ENSCHYG00000012752) #18	C1orf54 (ENSCHYG00000012611) #19	CIART (ENSCHYG00000012538) #20	ENSCHYG00000012484 #21	PRPF3 (ENSCHYG00000012362) #22	RPRD2 (ENSCHYG00000012167) #23	TARS2 (ENSCHYG00000011458) #24	ECM1 (ENSCHYG00000011225) #25	ADAMTSL4 (ENSCHYG00000010890) #27	MCL1 (ENSCHYG00000010763) #28	ENSCHYG00000010464 #29	GOLPH3L (ENSCHYG00000010384) #30	HORMAD1 (ENSCHYG00000010140) #31	CTSS (ENSCHYG00000009944) #32	CTSK (ENSCHYG00000009848) #33	ARNT (ENSCHYG00000009373) #34	CTXND2 (ENSCHYG00000009233) #36	SETDB1 (ENSCHYG00000008840) #37	CERS2 (ENSCHYG00000008620)	ANXA9 (ENSCHYG00000008588)
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000154555.a.a.b	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a
Bovidae	ANCESTRAL SPECIES	1	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.i #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000154555.a.a.b	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a
Bovinae	ANCESTRAL SPECIES	1	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.i #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000154555.a.a.b	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a
Bos	ANCESTRAL SPECIES		ENSGT01100000263575.B.u	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.i #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT01100000263480.a.a.b.a.b.b.b.b.b	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000154555.a.a.b	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37
Bos_b	ANCESTRAL SPECIES	1	ENSGT00940000156302	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.i #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT01100000263480.a.a.b.a.b.b.b.b.b	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b.o #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000154555.a.a.b	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37
Hybrid Bos Indicus	MODERN SPECIES	22	H3-7 (ENSBIXG00005025404)	ENSBIXG00005004318	H2AC20 (ENSBIXG00005025423) #7	ENSBIXG00005025435 #9	SV2A (ENSBIXG00005025476) #10	ENSBIXG00005004342 #11	MTMR11 (ENSBIXG00005004349) #12	OTUD7B (ENSBIXG00005025620) #13	VPS45 (ENSBIXG00005025887) #14	PLEKHO1 (ENSBIXG00005025976) #15	ENSBIXG00005006696 #16	CA14 (ENSBIXG00005004451) #17	APH1A (ENSBIXG00005026181) #18	CIART (ENSBIXG00005026269) #20	MRPS21 (ENSBIXG00005004483) #21	PRPF3 (ENSBIXG00005026388) #22	ENSBIXG00005026407	RPRD2 (ENSBIXG00005004524) #23	TARS2 (ENSBIXG00005007645) #24	ADAMTSL4 (ENSBIXG00005026752) #27	ENSBIXG00005026789 #28	ENSA (ENSBIXG00005026915) #29	GOLPH3L (ENSBIXG00005004612) #30	HORMAD1 (ENSBIXG00005027115) #31	ENSBIXG00005027168	CTSK (ENSBIXG00005027189) #33	ARNT (ENSBIXG00005006942) #34	CTXND2 (ENSBIXG00005027316) #36	SETDB1 (ENSBIXG00005027385) #37	CERS2 (ENSBIXG00005027450)	ANXA9 (ENSBIXG00005007589)
Cow	MODERN SPECIES	22	H2AC21 (ENSBTAG00000032456) #8	H2AC20 (ENSBTAG00000040098)	BOLA1 (ENSBTAG00000006050) #9	SV2A (ENSBTAG00000001599) #10	SF3B4 (ENSBTAG00000012495) #11	MTMR11 (ENSBTAG00000012496) #12	OTUD7B (ENSBTAG00000001586) #13	VPS45 (ENSBTAG00000020635) #14	PLEKHO1 (ENSBTAG00000004852) #15	ANP32E (ENSBTAG00000016730) #16	CA14 (ENSBTAG00000021481) #17	APH1A (ENSBTAG00000021482) #18	C3H1orf54 (ENSBTAG00000021485) #19	CIART (ENSBTAG00000021487) #20	MRPS21 (ENSBTAG00000024378) #21	PRPF3 (ENSBTAG00000013946) #22	RPRD2 (ENSBTAG00000014984) #23	TARS2 (ENSBTAG00000003799) #24	ECM1 (ENSBTAG00000003806) #25	ADAMTSL4 (ENSBTAG00000003604) #27	MCL1 (ENSBTAG00000015154) #28	ENSA (ENSBTAG00000007123) #29	GOLPH3L (ENSBTAG00000020357) #30	HORMAD1 (ENSBTAG00000002724) #31	CTSS (ENSBTAG00000017135) #32	ENSBTAG00000050340	CTSK (ENSBTAG00000021035) #33	ARNT (ENSBTAG00000021037) #34	SETDB1 (ENSBTAG00000000098) #37	CERS2 (ENSBTAG00000000099)	ANXA9 (ENSBTAG00000015304)
Bos_a	ANCESTRAL SPECIES	47	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.i #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT01100000263480.a.a.b.a.b.b.b.b.b	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000154555.a.a.b	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37
Domestic yak	MODERN SPECIES	22	H2AC21 (ENSBGRG00000016349) #8	ENSBGRG00000016367	SV2A (ENSBGRG00000016418) #10	ENSBGRG00000016698 #11	MTMR11 (ENSBGRG00000016764) #12	OTUD7B (ENSBGRG00000016856) #13	VPS45 (ENSBGRG00000016926) #14	PLEKHO1 (ENSBGRG00000017135) #15	ENSBGRG00000017198 #16	ENSBGRG00000017224	CA14 (ENSBGRG00000000220) #17	APH1A (ENSBGRG00000000249) #18	C1orf54 (ENSBGRG00000000272) #19	CIART (ENSBGRG00000000285) #20	MRPS21 (ENSBGRG00000000322) #21	PRPF3 (ENSBGRG00000000360) #22	ENSBGRG00000000401	RPRD2 (ENSBGRG00000000422) #23	ENSBGRG00000000495	TARS2 (ENSBGRG00000000557) #24	ECM1 (ENSBGRG00000000897) #25	ADAMTSL4 (ENSBGRG00000000934) #27	MCL1 (ENSBGRG00000000962) #28	ENSA (ENSBGRG00000001008) #29	ENSBGRG00000001073 #30	HORMAD1 (ENSBGRG00000001109) #31	ENSBGRG00000001219	ENSBGRG00000001228	CTSK (ENSBGRG00000001240) #33	ARNT (ENSBGRG00000001283) #34	CTXND2 (ENSBGRG00000001358) #36
Wild yak	MODERN SPECIES	688	ENSBMUG00000023246 ##7	H2AC21 (ENSBMUG00000023258) #8	BOLA1 (ENSBMUG00000023276) #9	SV2A (ENSBMUG00000023283) #10	ENSBMUG00000023291 #11	MTMR11 (ENSBMUG00000023303) #12	OTUD7B (ENSBMUG00000023313) #13	VPS45 (ENSBMUG00000023335) #14	PLEKHO1 (ENSBMUG00000023366) #15	ENSBMUG00000023376 #16	CA14 (ENSBMUG00000023394) #17	APH1A (ENSBMUG00000023411) #18	C1orf54 (ENSBMUG00000023423) #19	CIART (ENSBMUG00000023439) #20	MRPS21 (ENSBMUG00000023447) #21	PRPF3 (ENSBMUG00000023465) #22	RPRD2 (ENSBMUG00000023488) #23	TARS2 (ENSBMUG00000023540) #24	ECM1 (ENSBMUG00000023627) #25	ADAMTSL4 (ENSBMUG00000023675) #27	MCL1 (ENSBMUG00000023701) #28	ENSA (ENSBMUG00000023727) #29	GOLPH3L (ENSBMUG00000023736) #30	HORMAD1 (ENSBMUG00000023788) #31	CTSS (ENSBMUG00000023817) #32	ENSBMUG00000023823	CTSK (ENSBMUG00000023829) #33	ARNT (ENSBMUG00000023892) #34	CTXND2 (ENSBMUG00000023928) #36	SETDB1 (ENSBMUG00000023958) #37	CERS2 (ENSBMUG00000023975)
American bison	MODERN SPECIES	3032	H2AC21 (ENSBBBG00000023276) #8	ENSBBBG00000023283 #9	ENSBBBG00000023289 #9	SV2A (ENSBBBG00000023321) #10	ENSBBBG00000006102 #11	MTMR11 (ENSBBBG00000023347) #12	OTUD7B (ENSBBBG00000023362) #13	VPS45 (ENSBBBG00000023405) #14	PLEKHO1 (ENSBBBG00000023413) #15	ENSBBBG00000023424 #16	CA14 (ENSBBBG00000023456) #17	APH1A (ENSBBBG00000023500) #18	C1orf54 (ENSBBBG00000008854) #19	CIART (ENSBBBG00000023556) #20	MRPS21 (ENSBBBG00000023564) #21	PRPF3 (ENSBBBG00000023595) #22	RPRD2 (ENSBBBG00000023635) #23	TARS2 (ENSBBBG00000023752) #24	ECM1 (ENSBBBG00000023801) #25	ADAMTSL4 (ENSBBBG00000008423) #27	MCL1 (ENSBBBG00000023859) #28	ENSA (ENSBBBG00000023921) #29	ENSBBBG00000023935 #30	HORMAD1 (ENSBBBG00000024026) #31	CTSS (ENSBBBG00000024064) #32	ENSBBBG00000006254	CTSK (ENSBBBG00000006256) #33	ARNT (ENSBBBG00000024242) #34	CTXND2 (ENSBBBG00000006318) #36	SETDB1 (ENSBBBG00000006339) #37	CERS2 (ENSBBBG00000006357)
Caprinae	ANCESTRAL SPECIES	2	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537.i #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000003316.d.g.a.b.a.a	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000154555.a.a.b	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a
Goat	MODERN SPECIES	22	H2BC21 (ENSCHIG00000012955)	H2AC20 (ENSCHIG00000010392) #7	H2AC21 (ENSCHIG00000006209) #8	BOLA1 (ENSCHIG00000023087) #9	SV2A (ENSCHIG00000017231) #10	ENSCHIG00000025663 #11	MTMR11 (ENSCHIG00000021928) #12	OTUD7B (ENSCHIG00000020643) #13	VPS45 (ENSCHIG00000010595) #14	PLEKHO1 (ENSCHIG00000022413) #15	ANP32E (ENSCHIG00000002759) #16	CA14 (ENSCHIG00000024032) #17	APH1A (ENSCHIG00000015526) #18	CIART (ENSCHIG00000001297) #20	MRPS21 (ENSCHIG00000021516) #21	PRPF3 (ENSCHIG00000015434) #22	RPRD2 (ENSCHIG00000023733) #23	TARS2 (ENSCHIG00000018559) #24	ECM1 (ENSCHIG00000010881) #25	ENSCHIG00000025006	ENSCHIG00000011166	ADAMTSL4 (ENSCHIG00000024595) #27	MCL1 (ENSCHIG00000027012) #28	ENSA (ENSCHIG00000011483) #29	ENSCHIG00000017930 #30	ENSCHIG00000006760	HORMAD1 (ENSCHIG00000010871) #31	CTSS (ENSCHIG00000022768) #32	ENSCHIG00000012927	CTSK (ENSCHIG00000011574) #33	ARNT (ENSCHIG00000012451) #34
Rambouillet Sheep	MODERN SPECIES		HIST2H2AC (ENSOARG00020006891) #7	HIST2H2AB (ENSOARG00020006921) #8	BOLA1 (ENSOARG00020006951) #9	SV2A (ENSOARG00020007009) #10	SF3B4 (ENSOARG00020007183) #11	MTMR11 (ENSOARG00020007236) #12	OTUD7B (ENSOARG00020007348) #13	VPS45 (ENSOARG00020007445) #14	PLEKHO1 (ENSOARG00020007594) #15	ENSOARG00020007614 #16	CA14 (ENSOARG00020007644) #17	APH1A (ENSOARG00020007706) #18	C1orf54 (ENSOARG00020007824) #19	CIART (ENSOARG00020007852) #20	MRPS21 (ENSOARG00020007924) #21	PRPF3 (ENSOARG00020007961) #22	RPRD2 (ENSOARG00020008088) #23	TARS2 (ENSOARG00020008324) #24	ECM1 (ENSOARG00020008539) #25	ADAMTSL4 (ENSOARG00020008616) #27	MCL1 (ENSOARG00020008725) #28	ENSA (ENSOARG00020008758) #29	GOLPH3L (ENSOARG00020008878) #30	ENSOARG00020008922	HORMAD1 (ENSOARG00020008996) #31	CTSS (ENSOARG00020009546) #32	ENSOARG00020009638	CTSK (ENSOARG00020009669) #33	ARNT (ENSOARG00020009727) #34	ENSOARG00020011070	CTXND2 (ENSOARG00020011105) #36
Siberian musk deer	MODERN SPECIES	247	H2AC20 (ENSMMSG00000021185) #7	H2AC21 (ENSMMSG00000021172) #8	BOLA1 (ENSMMSG00000021162) #9	SV2A (ENSMMSG00000021080) #10	SF3B4 (ENSMMSG00000021043) #11	MTMR11 (ENSMMSG00000020972) #12	OTUD7B (ENSMMSG00000020949) #13	VPS45 (ENSMMSG00000020801) #14	PLEKHO1 (ENSMMSG00000020759) #15	ANP32E (ENSMMSG00000020532) #16	CA14 (ENSMMSG00000020490) #17	APH1A (ENSMMSG00000020404) #18	C1orf54 (ENSMMSG00000020377) #19	CIART (ENSMMSG00000020350) #20	MRPS21 (ENSMMSG00000020328) #21	PRPF3 (ENSMMSG00000020222) #22	RPRD2 (ENSMMSG00000020110) #23	TARS2 (ENSMMSG00000019987) #24	ECM1 (ENSMMSG00000019915) #25	ADAMTSL4 (ENSMMSG00000019809) #27	MCL1 (ENSMMSG00000019746) #28	ENSA (ENSMMSG00000019666) #29	ENSMMSG00000019621	ENSMMSG00000019604 #30	HORMAD1 (ENSMMSG00000019531) #31	CTSS (ENSMMSG00000019442) #32	ENSMMSG00000019418	CTSK (ENSMMSG00000019381) #33	ARNT (ENSMMSG00000019310) #34	CTXND2 (ENSMMSG00000019290) #36	SETDB1 (ENSMMSG00000019191) #37
Camelidae	ANCESTRAL SPECIES	6	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835	ENSGT00390000016607.b
Arabian camel	MODERN SPECIES	13	H2AC20 (ENSCDRG00005015569) #7	H2AC21 (ENSCDRG00005015577) #8	BOLA1 (ENSCDRG00005015588) #9	SV2A (ENSCDRG00005015609) #10	SF3B4 (ENSCDRG00005015698) #11	MTMR11 (ENSCDRG00005015753) #12	OTUD7B (ENSCDRG00005015982) #13	VPS45 (ENSCDRG00005016029) #14	PLEKHO1 (ENSCDRG00005016174) #15	ANP32E (ENSCDRG00005016234) #16	CA14 (ENSCDRG00005016386) #17	APH1A (ENSCDRG00005016465) #18	ENSCDRG00005016574 #19	CIART (ENSCDRG00005016658) #20	ENSCDRG00005016696 #21	PRPF3 (ENSCDRG00005016744) #22	RPRD2 (ENSCDRG00005016821) #23	TARS2 (ENSCDRG00005017096) #24	ECM1 (ENSCDRG00005017209) #25	ADAMTSL4 (ENSCDRG00005017304) #27	MCL1 (ENSCDRG00005017360) #28	ENSA (ENSCDRG00005017421) #29	GOLPH3L (ENSCDRG00005017458) #30	HORMAD1 (ENSCDRG00005017527) #31	CTSS (ENSCDRG00005017707) #32	CTSK (ENSCDRG00005017757) #33	ARNT (ENSCDRG00005017808) #34	SETDB1 (ENSCDRG00005018003) #37	CERS2 (ENSCDRG00005018124)	ANXA9 (ENSCDRG00005018156)	MINDY1 (ENSCDRG00005018219)
Alpaca	MODERN SPECIES	2206								VPS45 (ENSVPAG00000005416) #14	PLEKHO1 (ENSVPAG00000005419) #15	ANP32E (ENSVPAG00000005420) #16	CA14 (ENSVPAG00000005421) #17	ENSVPAG00000005423 #19	CIART (ENSVPAG00000005424) #20	MRPS21 (ENSVPAG00000015525) #21	ENSVPAG00000015489	PRPF3 (ENSVPAG00000005425) #22	RPRD2 (ENSVPAG00000005426) #23	TARS2 (ENSVPAG00000005427) #24	ENSVPAG00000005428	MCL1 (ENSVPAG00000005430) #28	ENSA (ENSVPAG00000005431) #29	GOLPH3L (ENSVPAG00000005432) #30	HORMAD1 (ENSVPAG00000005435) #31	CTSS (ENSVPAG00000005436) #32	CTSK (ENSVPAG00000005437) #33	ARNT (ENSVPAG00000005439) #34	SETDB1 (ENSVPAG00000005440) #37
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Carnivora	ANCESTRAL SPECIES	1	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Caniformia	ANCESTRAL SPECIES	31	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Caniformia_b	ANCESTRAL SPECIES	35	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835	ENSGT00390000016607.b
Ursidae	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.a.b #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835	ENSGT00390000016607.b
Ursus	ANCESTRAL SPECIES	18	ENSGT01100000263575.A	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a.a.b #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00950000186073	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
American black bear	MODERN SPECIES	6516										CA14 (ENSUAMG00000009329) #17	APH1A (ENSUAMG00000009333) #18	C1orf54 (ENSUAMG00000009336) #19	CIART (ENSUAMG00000009337) #20	MRPS21 (ENSUAMG00000009340) #21	ENSUAMG00000009343	PRPF3 (ENSUAMG00000009345) #22	ENSUAMG00000009349
Polar bear	MODERN SPECIES	193	ENSUMAG00000003822 ##7	H2AC21 (ENSUMAG00000003816) #8	SV2A (ENSUMAG00000003804) #10	SF3B4 (ENSUMAG00000003802) #11	MTMR11 (ENSUMAG00000003794) #12	OTUD7B (ENSUMAG00000003786) #13	VPS45 (ENSUMAG00000003781) #14	PLEKHO1 (ENSUMAG00000003760) #15	ANP32E (ENSUMAG00000003756) #16	ENSUMAG00000003753	CA14 (ENSUMAG00000003751) #17	APH1A (ENSUMAG00000003746) #18	C1orf54 (ENSUMAG00000003742) #19	CIART (ENSUMAG00000003740) #20	MRPS21 (ENSUMAG00000003735) #21	PRPF3 (ENSUMAG00000003720) #22	RPRD2 (ENSUMAG00000003712) #23	TARS2 (ENSUMAG00000003705) #24	ECM1 (ENSUMAG00000003701) #25	ADAMTSL4 (ENSUMAG00000003512) #27	ENSA (ENSUMAG00000003476) #29	GOLPH3L (ENSUMAG00000003469) #30	HORMAD1 (ENSUMAG00000003454) #31	CTSS (ENSUMAG00000003442) #32	ENSUMAG00000003430	CTSK (ENSUMAG00000003426) #33	ARNT (ENSUMAG00000003392) #34	SETDB1 (ENSUMAG00000003141) #37	CERS2 (ENSUMAG00000003094)	ANXA9 (ENSUMAG00000003084)	MINDY1 (ENSUMAG00000003075)
Giant Panda	MODERN SPECIES	11	H2AC20 (ENSAMEG00000030590) #7	H2AC21 (ENSAMEG00000030369) #8	BOLA1 (ENSAMEG00000018625) #9	SV2A (ENSAMEG00000010085) #10	SF3B4 (ENSAMEG00000010073) #11	MTMR11 (ENSAMEG00000010059) #12	OTUD7B (ENSAMEG00000010043) #13	VPS45 (ENSAMEG00000001841) #14	PLEKHO1 (ENSAMEG00000001832) #15	ANP32E (ENSAMEG00000001813) #16	CA14 (ENSAMEG00000001775) #17	APH1A (ENSAMEG00000001729) #18	C1orf54 (ENSAMEG00000001725) #19	CIART (ENSAMEG00000001706) #20	MRPS21 (ENSAMEG00000001703) #21	PRPF3 (ENSAMEG00000001630) #22	RPRD2 (ENSAMEG00000001598) #23	TARS2 (ENSAMEG00000001547) #24	ECM1 (ENSAMEG00000001502) #25	ADAMTSL4 (ENSAMEG00000001424) #27	MCL1 (ENSAMEG00000001399) #28	ENSA (ENSAMEG00000001375) #29	GOLPH3L (ENSAMEG00000030641) #30	HORMAD1 (ENSAMEG00000001321) #31	ENSAMEG00000001264 #32	ARNT (ENSAMEG00000001200) #34	ENSAMEG00000011643	SETDB1 (ENSAMEG00000001160) #37	CERS2 (ENSAMEG00000001115)	ANXA9 (ENSAMEG00000001101)	MINDY1 (ENSAMEG00000001070)
Mustelinae	ANCESTRAL SPECIES	81	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835	ENSGT00390000016607.b
American mink	MODERN SPECIES	316											CA14 (ENSNVIG00000017080) #17	APH1A (ENSNVIG00000017021) #18	C1orf54 (ENSNVIG00000016999) #19	ENSNVIG00000016976 #20	MRPS21 (ENSNVIG00000016967) #21	PRPF3 (ENSNVIG00000016938) #22	RPRD2 (ENSNVIG00000016878) #23	TARS2 (ENSNVIG00000016668) #24	ECM1 (ENSNVIG00000016576) #25	ADAMTSL4 (ENSNVIG00000016514) #27	MCL1 (ENSNVIG00000016500) #28	ENSA (ENSNVIG00000016441) #29	GLP3L (ENSNVIG00000016426) #30	HORMAD1 (ENSNVIG00000016390) #31	CTSS (ENSNVIG00000016354) #32	CATK (ENSNVIG00000016339) #33	ARNT (ENSNVIG00000016210) #34	ENSNVIG00000016187	CTXND2 (ENSNVIG00000016170) #36	SETDB1 (ENSNVIG00000016086) #37	CERS2 (ENSNVIG00000016039)
Ferret	MODERN SPECIES	398	H2BC21 (ENSMPUG00000018424)	H2AC20 (ENSMPUG00000018423) #7	H2AC21 (ENSMPUG00000018422) #8	SV2A (ENSMPUG00000005578) #10	SF3B4 (ENSMPUG00000005563) #11	MTMR11 (ENSMPUG00000005535) #12	OTUD7B (ENSMPUG00000005404) #13	VPS45 (ENSMPUG00000005390) #14	PLEKHO1 (ENSMPUG00000005354) #15	ANP32E (ENSMPUG00000005343) #16	CA14 (ENSMPUG00000005329) #17	C1orf54 (ENSMPUG00000005317) #19	APH1A (ENSMPUG00000005237) #18	CIART (ENSMPUG00000005224) #20	MRPS21 (ENSMPUG00000005221) #21	PRPF3 (ENSMPUG00000005080) #22	RPRD2 (ENSMPUG00000005032) #23	TARS2 (ENSMPUG00000004795) #24	ECM1 (ENSMPUG00000004712) #25	ADAMTSL4 (ENSMPUG00000004691) #27	MCL1 (ENSMPUG00000004683) #28	ENSA (ENSMPUG00000004647) #29	GOLPH3L (ENSMPUG00000004608) #30	HORMAD1 (ENSMPUG00000004562) #31	CTSS (ENSMPUG00000004552) #32	ENSMPUG00000004471	CTSK (ENSMPUG00000004373) #33	ARNT (ENSMPUG00000004365) #34	SETDB1 (ENSMPUG00000004298) #37	CERS2 (ENSMPUG00000004292)	ANXA9 (ENSMPUG00000004217)
Canidae	ANCESTRAL SPECIES	18	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.k #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Canis_lupus	ANCESTRAL SPECIES	10	ENSGT00940000156302	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.k #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Dingo	MODERN SPECIES	223	H2AC21 (ENSCAFG00020019793) #8	ENSCAFG00020019789 ##7	BOLA1 (ENSCAFG00020019784) #9	SV2A (ENSCAFG00020019781) #10	SF3B4 (ENSCAFG00020019775) #11	MTMR11 (ENSCAFG00020019770) #12	OTUD7B (ENSCAFG00020019694) #13	VPS45 (ENSCAFG00020019689) #14	PLEKHO1 (ENSCAFG00020019684) #15	ENSCAFG00020019677 #16	CA14 (ENSCAFG00020019676) #17	APH1A (ENSCAFG00020019671) #18	C1orf54 (ENSCAFG00020019667) #19	CIART (ENSCAFG00020019665) #20	MRPS21 (ENSCAFG00020019663) #21	PRPF3 (ENSCAFG00020019653) #22	RPRD2 (ENSCAFG00020019619) #23	TARS2 (ENSCAFG00020019615) #24	ECM1 (ENSCAFG00020019611) #25	ADAMTSL4 (ENSCAFG00020019552) #27	MCL1 (ENSCAFG00020019541) #28	ENSA (ENSCAFG00020019539) #29	GOLPH3L (ENSCAFG00020019538) #30	HORMAD1 (ENSCAFG00020019532) #31	CTSS (ENSCAFG00020019528) #32	CTSK (ENSCAFG00020019521) #33	ARNT (ENSCAFG00020014304) #34	SETDB1 (ENSCAFG00020013596) #37	CERS2 (ENSCAFG00020013567)	ANXA9 (ENSCAFG00020013531)	MINDY1 (ENSCAFG00020013527)
Dog	MODERN SPECIES	8	ENSCAFG00845011880	ENSCAFG00845011998 #8	ENSCAFG00845012017 #9	SV2A (ENSCAFG00845012074) #10	SF3B4 (ENSCAFG00845012146) #11	MTMR11 (ENSCAFG00845012198) #12	OTUD7B (ENSCAFG00845012281) #13	VPS45 (ENSCAFG00845012364) #14	PLEKHO1 (ENSCAFG00845012601) #15	ANP32E (ENSCAFG00845012804) #16	CA14 (ENSCAFG00845016587) #17	APH1A (ENSCAFG00845016683) #18	C1orf54 (ENSCAFG00845016794) #19	CIART (ENSCAFG00845016855) #20	MRPS21 (ENSCAFG00845016904) #21	PRPF3 (ENSCAFG00845017034) #22	RPRD2 (ENSCAFG00845017196) #23	TARS2 (ENSCAFG00845017490) #24	ECM1 (ENSCAFG00845018089) #25	ADAMTSL4 (ENSCAFG00845018385) #27	MCL1 (ENSCAFG00845018496) #28	ENSA (ENSCAFG00845018577) #29	GOLPH3L (ENSCAFG00845018671) #30	HORMAD1 (ENSCAFG00845018896) #31	CTSS (ENSCAFG00845019241) #32	CTSK (ENSCAFG00845019461) #33	ARNT (ENSCAFG00845019671) #34	CTXND2 (ENSCAFG00845020148) #36	SETDB1 (ENSCAFG00845020216) #37	CERS2 (ENSCAFG00845020459)	ANXA9 (ENSCAFG00845020549)
Red fox	MODERN SPECIES	176	H2BC21 (ENSVVUG00000007671)	H2AC20 (ENSVVUG00000007707) #7	H2AC21 (ENSVVUG00000007714) #8	BOLA1 (ENSVVUG00000007718) #9	SV2A (ENSVVUG00000007726) #10	ENSVVUG00000007732 #11	MTMR11 (ENSVVUG00000007745) #12	OTUD7B (ENSVVUG00000007773) #13	VPS45 (ENSVVUG00000007786) #14	PLEKHO1 (ENSVVUG00000007828) #15	ENSVVUG00000007839 #16	CA14 (ENSVVUG00000007843) #17	APH1A (ENSVVUG00000007850) #18	CIART (ENSVVUG00000007857) #20	MRPS21 (ENSVVUG00000007865) #21	PRPF3 (ENSVVUG00000007933) #22	RPRD2 (ENSVVUG00000009075) #23	TARS2 (ENSVVUG00000009226) #24	ECM1 (ENSVVUG00000011492) #25	ENSVVUG00000011504	ADAMTSL4 (ENSVVUG00000011516) #27	MCL1 (ENSVVUG00000011532) #28	ENSA (ENSVVUG00000011538) #29	ENSVVUG00000011548 #30	CTSS (ENSVVUG00000011558) #32	CTSK (ENSVVUG00000011566) #33	ARNT (ENSVVUG00000011582) #34	ENSVVUG00000011618	SETDB1 (ENSVVUG00000011637) #37	CERS2 (ENSVVUG00000011653)	ANXA9 (ENSVVUG00000011665)
Felidae	ANCESTRAL SPECIES	10	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.n #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00390000009588.fb.b	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a
Panthera	ANCESTRAL SPECIES	40	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.n.a #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00390000009588.fb.b	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a
Tiger	MODERN SPECIES	275	ENSPTIG00000004585	H2AC21 (ENSPTIG00000004596) #8	BOLA1 (ENSPTIG00000004599) #9	SV2A (ENSPTIG00000013557) #10	SF3B4 (ENSPTIG00000014530) #11	MTMR11 (ENSPTIG00000014650) #12	OTUD7B (ENSPTIG00000017376) #13	VPS45 (ENSPTIG00000018151) #14	PLEKHO1 (ENSPTIG00000018948) #15	ANP32E (ENSPTIG00000019676) #16	CA14 (ENSPTIG00000020798) #17	APH1A (ENSPTIG00000021060) #18	C1orf54 (ENSPTIG00000021455) #19	CIART (ENSPTIG00000000357) #20	ENSPTIG00000003850 #21	PRPF3 (ENSPTIG00000005516) #22	RPRD2 (ENSPTIG00000006304) #23	TARS2 (ENSPTIG00000008079) #24	ECM1 (ENSPTIG00000012717) #25	ADAMTSL4 (ENSPTIG00000015181) #27	MCL1 (ENSPTIG00000016268) #28	ENSA (ENSPTIG00000016622) #29	GOLPH3L (ENSPTIG00000019004) #30	HORMAD1 (ENSPTIG00000019960) #31	CTSS (ENSPTIG00000001310) #32	CTSK (ENSPTIG00000004636) #33	ARNT (ENSPTIG00000006152) #34	ENSPTIG00000012578	CTXND2 (ENSPTIG00000005780) #36	SETDB1 (ENSPTIG00000014233) #37	CERS2 (ENSPTIG00000018998)
Panthera_a	ANCESTRAL SPECIES	38	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038.n.a #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00390000009588.fb.b	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a
leopard	MODERN SPECIES	149	ENSPPRG00000016865 #7	H2AC21 (ENSPPRG00000016850) #8	BOLA1 (ENSPPRG00000016802) #9	SV2A (ENSPPRG00000007971) #10	SF3B4 (ENSPPRG00000007384) #11	MTMR11 (ENSPPRG00000007153) #12	OTUD7B (ENSPPRG00000005622) #13	VPS45 (ENSPPRG00000005479) #14	PLEKHO1 (ENSPPRG00000004031) #15	ANP32E (ENSPPRG00000003660) #16	CA14 (ENSPPRG00000002165) #17	APH1A (ENSPPRG00000002030) #18	C1orf54 (ENSPPRG00000001580) #19	CIART (ENSPPRG00000001098) #20	ENSPPRG00000000903 #21	PRPF3 (ENSPPRG00000000731) #22	ENSPPRG00000000561	RPRD2 (ENSPPRG00000000487) #23	TARS2 (ENSPPRG00000019975) #24	ECM1 (ENSPPRG00000013966) #25	ADAMTSL4 (ENSPPRG00000012710) #27	MCL1 (ENSPPRG00000011968) #28	ENSPPRG00000011393 #29	GOLPH3L (ENSPPRG00000010135) #30	HORMAD1 (ENSPPRG00000010018) #31	CTSS (ENSPPRG00000008620) #32	CTSK (ENSPPRG00000008091) #33	ARNT (ENSPPRG00000007894) #34	ENSPPRG00000006841	CTXND2 (ENSPPRG00000015884) #36	SETDB1 (ENSPPRG00000005462) #37
lion	MODERN SPECIES	8	H2AC20 (ENSPLOG00000017459) #7	H2AC21 (ENSPLOG00000017476) #8	BOLA1 (ENSPLOG00000017492) #9	SV2A (ENSPLOG00000017521) #10	SF3B4 (ENSPLOG00000017698) #11	MTMR11 (ENSPLOG00000017771) #12	OTUD7B (ENSPLOG00000017898) #13	VPS45 (ENSPLOG00000017939) #14	PLEKHO1 (ENSPLOG00000018167) #15	ANP32E (ENSPLOG00000018252) #16	CA14 (ENSPLOG00000018473) #17	APH1A (ENSPLOG00000018596) #18	C1orf54 (ENSPLOG00000018755) #19	CIART (ENSPLOG00000018806) #20	ENSPLOG00000018890 #21	PRPF3 (ENSPLOG00000018919) #22	RPRD2 (ENSPLOG00000018951) #23	TARS2 (ENSPLOG00000019042) #24	ECM1 (ENSPLOG00000019469) #25	ADAMTSL4 (ENSPLOG00000019514) #27	MCL1 (ENSPLOG00000019623) #28	ENSPLOG00000019678 #29	GOLPH3L (ENSPLOG00000019714) #30	HORMAD1 (ENSPLOG00000019828) #31	CTSK (ENSPLOG00000020110) #33	ARNT (ENSPLOG00000020141) #34	ENSPLOG00000020188	CTXND2 (ENSPLOG00000020213) #36	SETDB1 (ENSPLOG00000020237) #37	CERS2 (ENSPLOG00000020309)	ANXA9 (ENSPLOG00000020367)
Cat	MODERN SPECIES	239	ENSFCAG00000047792	H2BC19 (ENSFCAG00000044074)	SV2A (ENSFCAG00000010104) #10	ENSFCAG00000051403	SF3B4 (ENSFCAG00000010106) #11	MTMR11 (ENSFCAG00000010108) #12	OTUD7B (ENSFCAG00000010110) #13	VPS45 (ENSFCAG00000010112) #14	PLEKHO1 (ENSFCAG00000035563) #15	ANP32E (ENSFCAG00000022278) #16	APH1A (ENSFCAG00000030589) #18	CA14 (ENSFCAG00000013934) #17	CC1H1orf54 (ENSFCAG00000013939) #19	CIART (ENSFCAG00000013937) #20	ENSFCAG00000034082 #21	PRPF3 (ENSFCAG00000013940) #22	RPRD2 (ENSFCAG00000030083) #23	MCL1 (ENSFCAG00000030278) #28	TARS2 (ENSFCAG00000001702) #24	ECM1 (ENSFCAG00000027224) #25	ADAMTSL4 (ENSFCAG00000000754) #27	ENSA (ENSFCAG00000024290) #29	GOLPH3L (ENSFCAG00000035181) #30	HORMAD1 (ENSFCAG00000025264) #31	CTSS (ENSFCAG00000003642) #32	CTSK (ENSFCAG00000003643) #33	ARNT (ENSFCAG00000003644) #34	ENSFCAG00000035512	SETDB1 (ENSFCAG00000009655) #37	CERS2 (ENSFCAG00000009657)	ANXA9 (ENSFCAG00000009658)
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Equus	ANCESTRAL SPECIES	3	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Donkey	MODERN SPECIES	17	H2AC21 (ENSEASG00005032093) #8	ENSEASG00005001466 #9	SV2A (ENSEASG00005001472) #10	SF3B4 (ENSEASG00005001477) #11	MTMR11 (ENSEASG00005001485) #12	OTUD7B (ENSEASG00005001503) #13	ENSEASG00005027301 #14	VPS45 (ENSEASG00005001512) #14	PLEKHO1 (ENSEASG00005001526) #15	ANP32E (ENSEASG00005038731) #16	CA14 (ENSEASG00005001536) #17	APH1A (ENSEASG00005035187) #18	C1orf54 (ENSEASG00005025776) #19	CIART (ENSEASG00005001554) #20	MRPS21 (ENSEASG00005001557) #21	PRPF3 (ENSEASG00005001566) #22	RPRD2 (ENSEASG00005001574) #23	TARS2 (ENSEASG00005001587) #24	ECM1 (ENSEASG00005001606) #25	ADAMTSL4 (ENSEASG00005001774) #27	MCL1 (ENSEASG00005002018) #28	ENSA (ENSEASG00005025935) #29	GOLPH3L (ENSEASG00005034481) #30	HORMAD1 (ENSEASG00005002037) #31	CTSS (ENSEASG00005002042) #32	CTSK (ENSEASG00005002046) #33	ARNT (ENSEASG00005002052) #34	CTXND2 (ENSEASG00005023903) #36	SETDB1 (ENSEASG00005002061) #37	CERS2 (ENSEASG00005002064)	ANXA9 (ENSEASG00005002066)
Horse	MODERN SPECIES	26	ENSECAG00000054279	H2BC20 (ENSECAG00000060054)	H2AC20 (ENSECAG00000049520) #7	BOLA1 (ENSECAG00000034826) #9	SV2A (ENSECAG00000007414) #10	MTMR11 (ENSECAG00000023282) #12	OTUD7B (ENSECAG00000019449) #13	VPS45 (ENSECAG00000013816) #14	PLEKHO1 (ENSECAG00000059570) #15	ENSECAG00000044747	ENSECAG00000057654	ANP32E (ENSECAG00000008718) #16	APH1A (ENSECAG00000012998) #18	CA14 (ENSECAG00000002916) #19	CIART (ENSECAG00000010349) #20	PRPF3 (ENSECAG00000019840) #22	RPRD2 (ENSECAG00000018617) #23	TARS2 (ENSECAG00000014276) #24	ECM1 (ENSECAG00000008545) #25	ADAMTSL4 (ENSECAG00000019154) #27	MCL1 (ENSECAG00000018823) #28	ENSA (ENSECAG00000017165) #29	GOLPH3L (ENSECAG00000016587) #30	HORMAD1 (ENSECAG00000011731) #31	CTSS (ENSECAG00000022438) #32	CTSK (ENSECAG00000019087) #33	ARNT (ENSECAG00000009602) #34	SETDB1 (ENSECAG00000023954) #37	CERS2 (ENSECAG00000018141)	MINDY1 (ENSECAG00000009096)	ANXA9 (ENSECAG00000014801)
Chiroptera	ANCESTRAL SPECIES	20	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Microchiroptera	ANCESTRAL SPECIES	21	ENSGT00940000153118.db.a.a.b.a.a #7	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000164740 #36	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835
Greater horseshoe bat	MODERN SPECIES	14	H2AC21 (ENSRFEG00010019466) #8	ENSRFEG00010019479	BOLA1 (ENSRFEG00010019489) #9	SV2A (ENSRFEG00010019515) #10	SF3B4 (ENSRFEG00010019596) #11	MTMR11 (ENSRFEG00010019669) #12	OTUD7B (ENSRFEG00010019911) #13	VPS45 (ENSRFEG00010019952) #14	PLEKHO1 (ENSRFEG00010020048) #15	ANP32E (ENSRFEG00010020103) #16	CA14 (ENSRFEG00010020216) #17	APH1A (ENSRFEG00010020244) #18	C1orf54 (ENSRFEG00010020321) #19	CIART (ENSRFEG00010020371) #20	ENSRFEG00010020409 #21	PRPF3 (ENSRFEG00010020436) #22	RPRD2 (ENSRFEG00010020482) #23	TARS2 (ENSRFEG00010020572) #24	ECM1 (ENSRFEG00010020676) #25	ADAMTSL4 (ENSRFEG00010020724) #27	MCL1 (ENSRFEG00010020768) #28	ENSA (ENSRFEG00010020814) #29	ENSRFEG00010020865	GOLPH3L (ENSRFEG00010020873) #30	HORMAD1 (ENSRFEG00010020903) #31	CTSS (ENSRFEG00010021017) #32	CTSK (ENSRFEG00010021054) #33	ENSRFEG00010021080	ARNT (ENSRFEG00010021097) #34	CTXND2 (ENSRFEG00010021199) #36	SETDB1 (ENSRFEG00010021209) #37
Microbat	MODERN SPECIES	107																ENSMLUG00000004646 #22
Megabat	MODERN SPECIES	1050										ANP32E (ENSPVAG00000013462) #16	CA14 (ENSPVAG00000013464) #17	APH1A (ENSPVAG00000013466) #18	C1orf54 (ENSPVAG00000013468) #19	CIART (ENSPVAG00000013469) #20	MRPS21 (ENSPVAG00000024222) #21	PRPF3 (ENSPVAG00000013472) #22	RPRD2 (ENSPVAG00000013478) #23
Atlantogenata	ANCESTRAL SPECIES	66	ENSGT01100000263575.B	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835	ENSGT00390000016607.b
Afrotheria	ANCESTRAL SPECIES	76		ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835	ENSGT00390000016607.b
Afrotheria_a	ANCESTRAL SPECIES	75		ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835	ENSGT00390000016607.b
Elephant	MODERN SPECIES	26	ENSLAFG00000031642	H2AC21 (ENSLAFG00000001481) #8	BOLA1 (ENSLAFG00000008527) #9	SV2A (ENSLAFG00000008529) #10	SF3B4 (ENSLAFG00000008531) #11	MTMR11 (ENSLAFG00000008533) #12	OTUD7B (ENSLAFG00000026624) #13	VPS45 (ENSLAFG00000018411) #14	PLEKHO1 (ENSLAFG00000018415) #15	ANP32E (ENSLAFG00000026778) #16	CA14 (ENSLAFG00000004703) #17	APH1A (ENSLAFG00000004705) #18	C1orf54 (ENSLAFG00000022852) #19	CIART (ENSLAFG00000002729) #20	MRPS21 (ENSLAFG00000030348) #21	PRPF3 (ENSLAFG00000004713) #22	RPRD2 (ENSLAFG00000004975) #23	TARS2 (ENSLAFG00000004979) #24	ECM1 (ENSLAFG00000028827) #25	ADAMTSL4 (ENSLAFG00000030426) #27	MCL1 (ENSLAFG00000011260) #28	ENSA (ENSLAFG00000011261) #29	GOLPH3L (ENSLAFG00000031294) #30	HORMAD1 (ENSLAFG00000011265) #31	CTSS (ENSLAFG00000011276) #32	CTSK (ENSLAFG00000011279) #33	ARNT (ENSLAFG00000011282) #34	SETDB1 (ENSLAFG00000004006) #37	CERS2 (ENSLAFG00000028936)	ANXA9 (ENSLAFG00000004011)	MINDY1 (ENSLAFG00000004012)
Hyrax	MODERN SPECIES	1450																PRPF3 (ENSPCAG00000014908) #22
Tenrec	MODERN SPECIES	5062															CIART (ENSETEG00000019120) #20	PRPF3 (ENSETEG00000019124) #22
Xenarthra	ANCESTRAL SPECIES	107		ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000003103 #19	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34
Sloth	MODERN SPECIES	1618																PRPF3 (ENSCHOG00000011645) #22
Armadillo	MODERN SPECIES	1834	ENSDNOG00000043400	H2AC21 (ENSDNOG00000037547) #8	BOLA1 (ENSDNOG00000000839) #9	SV2A (ENSDNOG00000030740) #10	ENSDNOG00000048908 #11	MTMR11 (ENSDNOG00000002431) #12	OTUD7B (ENSDNOG00000039147) #13	VPS45 (ENSDNOG00000013685) #14	PLEKHO1 (ENSDNOG00000041988) #15	ANP32E (ENSDNOG00000034773) #16	CA14 (ENSDNOG00000007176) #17	APH1A (ENSDNOG00000007194) #18	ENSDNOG00000030893 #19	CIART (ENSDNOG00000041401) #20	MRPS21 (ENSDNOG00000025657) #21	PRPF3 (ENSDNOG00000005904) #22	RPRD2 (ENSDNOG00000005924) #23	TARS2 (ENSDNOG00000005934) #24	ECM1 (ENSDNOG00000044394) #25	ADAMTSL4 (ENSDNOG00000043483) #27	MCL1 (ENSDNOG00000000061) #28	ENSA (ENSDNOG00000041590) #29	ENSDNOG00000043610	ENSDNOG00000044672	GOLPH3L (ENSDNOG00000000067) #30	CTSS (ENSDNOG00000016628) #32	CTSK (ENSDNOG00000038345) #33	ARNT (ENSDNOG00000005093) #34
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00940000158522	ENSGT00950000183112.b.b	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835	ENSGT00390000016607.b
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00940000158522	ENSGT00950000183112.b.b	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835	ENSGT00390000016607.b
Diprotodontia	ANCESTRAL SPECIES	5	ENSGT01060000248645	ENSGT00940000158522	ENSGT00950000183112.b.b	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835	ENSGT00390000016607.b
Diprotodontia_a	ANCESTRAL SPECIES	6	ENSGT00940000153125.F	ENSGT00940000153118.db.a.a.b.a.b #8	ENSGT01100000263506.a.f	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00940000156893 #17	ENSGT00390000002049.c.a #18	ENSGT00390000018360 #20	ENSGT00500000045038.gb #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000161600 #24	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000161835	ENSGT00390000016607.b
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1007	ENSVURG00010015866	ENSVURG00010015862	ENSVURG00010015803	ENSVURG00010015790 #9	ENSVURG00010015766 #10	ENSVURG00010015753 #11	ENSVURG00010015733 #12	ENSVURG00010015716 #13	ENSVURG00010015671 #14	ENSVURG00010015660 #15	ENSVURG00010015651 #16	ENSVURG00010015635 #17	ENSVURG00010015618 #18	ENSVURG00010015603 #20	ENSVURG00010015584 #21	ENSVURG00010015568 #22	ENSVURG00010015284 #23	ENSVURG00010015119 #24	ENSVURG00010015082 #25	ENSVURG00010015042 #27	ENSVURG00010015036 #28	ENSVURG00010015024 #29	ENSVURG00010015007 #30	ENSVURG00010014924 #31	ENSVURG00010014896 #32	ENSVURG00010014884 #33	ENSVURG00010014843 #34	ENSVURG00010014816 #37	ENSVURG00010014801	ENSVURG00010014785	ENSVURG00010014761
Common wonbat	MODERN SPECIES	1007	ENSVURG00010001073	ENSVURG00010001047 #8	ENSVURG00010001021	ENSVURG00010000996 #9	ENSVURG00010000953 #10	ENSVURG00010000937 #11	ENSVURG00010000922 #12	ENSVURG00010000895 #13	ENSVURG00010000870 #14	ENSVURG00010000839 #15	ANP32E (ENSVURG00010000762) #16	ENSVURG00010000731 #17	ENSVURG00010000715 #18	ENSVURG00010000676 #20	ENSVURG00010000650 #21	ENSVURG00010000618 #22	ENSVURG00010000591 #23	ENSVURG00010000553 #24	ENSVURG00010000529 #25	ENSVURG00010000490 #27	ENSVURG00010000461 #28	ENSVURG00010000444 #29	ENSVURG00010000422 #30	ENSVURG00010000357 #31	ENSVURG00010000321 #32	ENSVURG00010000306 #33	ENSVURG00010000270 #34	ENSVURG00010000234 #37	ENSVURG00010000206	ENSVURG00010000188	ENSVURG00010000167
koala	MODERN SPECIES	4	ENSPCIG00000008760	H2AC21 (ENSPCIG00000036441) #8	ENSPCIG00000031608	BOLA1 (ENSPCIG00000008763) #9	SV2A (ENSPCIG00000008764) #10	SF3B4 (ENSPCIG00000008765) #11	MTMR11 (ENSPCIG00000008766) #12	OTUD7B (ENSPCIG00000008768) #13	VPS45 (ENSPCIG00000008774) #14	PLEKHO1 (ENSPCIG00000030649) #15	ENSPCIG00000033433 #16	CA14 (ENSPCIG00000008783) #17	APH1A (ENSPCIG00000008786) #18	CIART (ENSPCIG00000035308) #20	ENSPCIG00000008793 #21	PRPF3 (ENSPCIG00000008795) #22	RPRD2 (ENSPCIG00000008798) #23	TARS2 (ENSPCIG00000008884) #24	ENSPCIG00000008887 #25	ADAMTSL4 (ENSPCIG00000008894) #27	MCL1 (ENSPCIG00000008897) #28	ENSA (ENSPCIG00000023585) #29	ENSPCIG00000008899 #30	ENSPCIG00000008916 #33	ARNT (ENSPCIG00000008925) #34	ENSPCIG00000034396	CERS2 (ENSPCIG00000008928)	ANXA9 (ENSPCIG00000008929)	MINDY1 (ENSPCIG00000008930)	PRUNE1 (ENSPCIG00000007751)	BNIPL (ENSPCIG00000007757)
Wallaby	MODERN SPECIES	2627																PRPF3 (ENSMEUG00000008733) #22
Tasmanian devil	DUPLICATION
Tasmanian devil	MODERN SPECIES	3	ENSSHAG00000030611	ENSSHAG00000022199	ENSSHAG00000026594 #8	ENSSHAG00000003341 #9	SV2A (ENSSHAG00000003476) #10	OTUD7B (ENSSHAG00000028863) #13	VPS45 (ENSSHAG00000006633) #14	PLEKHO1 (ENSSHAG00000026260) #15	ANP32E (ENSSHAG00000021363) #16	CA14 (ENSSHAG00000009010) #17	APH1A (ENSSHAG00000022849) #18	CIART (ENSSHAG00000021296) #20	MRPS21 (ENSSHAG00000029824) #21	RPRD2 (ENSSHAG00000009969) #23	TARS2 (ENSSHAG00000010286) #24	ENSSHAG00000009548 #22	ECM1 (ENSSHAG00000010367) #25	ADAMTSL4 (ENSSHAG00000010707) #27	MCL1 (ENSSHAG00000021636) #28	ENSA (ENSSHAG00000029217) #29	HORMAD1 (ENSSHAG00000011613) #31	CTSS (ENSSHAG00000011950) #32	ARNT (ENSSHAG00000025438) #34	SETDB1 (ENSSHAG00000012701) #37	CERS2 (ENSSHAG00000012811)	MINDY1 (ENSSHAG00000013033)	ANXA9 (ENSSHAG00000012884)	ENSSHAG00000028099	ENSSHAG00000029597	ENSSHAG00000026643	GABPB2 (ENSSHAG00000030596)
Tasmanian devil	MODERN SPECIES	1	LDHD (ENSSHAG00000010993)	ZNRF1 (ENSSHAG00000030822)	WDR59 (ENSSHAG00000011756)	FA2H (ENSSHAG00000004764)	RFWD3 (ENSSHAG00000005677)	GLG1 (ENSSHAG00000003008)	ENSSHAG00000006095	ENSSHAG00000030566	ENSSHAG00000006713	EXOSC6 (ENSSHAG00000029181)	AARS1 (ENSSHAG00000007347)	ENSSHAG00000008169	ENSSHAG00000020684	ENSSHAG00000007733	ENSSHAG00000028327	ENSSHAG00000024574 #22	ST3GAL2 (ENSSHAG00000028011)	FCSK (ENSSHAG00000000017)	COG4 (ENSSHAG00000001444)	SF3B3 (ENSSHAG00000000372)	ENSSHAG00000032160	VAC14 (ENSSHAG00000005939)	MTSS2 (ENSSHAG00000005429)	HYDIN (ENSSHAG00000007440)	CMTR2 (ENSSHAG00000030558)	ENSSHAG00000020502	ENSSHAG00000022137	ENSSHAG00000011605	SLC38A7 (ENSSHAG00000011773)	ENSSHAG00000011945	CNOT1 (ENSSHAG00000012187)
Opossum	MODERN SPECIES	1	ENSMODG00000043839	ENSMODG00000050604	ENSMODG00000049030	ENSMODG00000044619	SV2A (ENSMODG00000018766) #10	SF3B4 (ENSMODG00000018767) #11	MTMR11 (ENSMODG00000018769) #12	OTUD7B (ENSMODG00000018770) #13	VPS45 (ENSMODG00000018771) #14	ENSMODG00000018772 #15	ENSMODG00000027412 #16	CA14 (ENSMODG00000018776) #17	APH1A (ENSMODG00000018778) #18	ENSMODG00000018781 #20	MRPS21 (ENSMODG00000018783) #21	PRPF3 (ENSMODG00000018774) #22	RPRD2 (ENSMODG00000018786) #23	TARS2 (ENSMODG00000018792) #24	ENSMODG00000018796 #25	MCL1 (ENSMODG00000018801) #28	ADAMTSL4 (ENSMODG00000018799) #27	ENSA (ENSMODG00000018804) #29	GOLPH3L (ENSMODG00000051501) #30	HORMAD1 (ENSMODG00000018807) #31	CTSS (ENSMODG00000018809) #32	CTSK (ENSMODG00000018811) #33	ARNT (ENSMODG00000018814) #34	SETDB1 (ENSMODG00000018821) #37	CERS2 (ENSMODG00000018825)	ANXA9 (ENSMODG00000018826)	MINDY1 (ENSMODG00000018827)
Platypus	MODERN SPECIES	88	PEX11B (ENSOANG00000040317)	ENSOANG00000043928	ENSOANG00000043050	ENSOANG00000040128	TXNIP (ENSOANG00000041306)	HJV (ENSOANG00000040602)	ENSOANG00000037391 #11	MTMR11 (ENSOANG00000040114) #12	ENSOANG00000003375 #14	PLEKHO1 (ENSOANG00000041629) #15	ENSOANG00000045338 #16	ENSOANG00000039352 #17	APH1A (ENSOANG00000043325) #18	ENSOANG00000038721	MRPS21 (ENSOANG00000050148) #21	PRPF3 (ENSOANG00000036562) #22	ENSOANG00000049931 #23	ENSOANG00000039301 #24	ENSOANG00000042673	ENSA (ENSOANG00000045744) #29	ENSOANG00000041783	ADAMTSL4 (ENSOANG00000042473) #27	ENSOANG00000038772	USF1 (ENSOANG00000048346)	ARHGAP30 (ENSOANG00000048572)	NECTIN4 (ENSOANG00000038612)	KLHDC9 (ENSOANG00000041659)	PFDN2 (ENSOANG00000037978)	DEDD (ENSOANG00000036083)	ENSOANG00000050912	ENSOANG00000044116
Sauria	ANCESTRAL SPECIES	28	ENSGT00950000186203	ENSGT00940000161215	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT01040000240780	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a
Lepidosauria	ANCESTRAL SPECIES	36	ENSGT00950000186203	ENSGT00940000161215	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT00550000074892	ENSGT00940000165572	ENSGT00940000156524	ENSGT00960000189065	ENSGT00530000064050	ENSGT00940000154703	ENSGT00390000017503	ENSGT00940000158734	ENSGT00390000010811	ENSGT00940000160002	ENSGT00390000003488.b
Episquamata	ANCESTRAL SPECIES	17	ENSGT00950000183112.b.b.a	ENSGT00940000161215	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT00550000074892	ENSGT00940000165572	ENSGT00940000156524	ENSGT00960000189065	ENSGT00530000064050	ENSGT00940000154703	ENSGT00390000017503	ENSGT00940000158734	ENSGT00390000010811	ENSGT00940000160002	ENSGT00390000003488.b
Toxicofera	ANCESTRAL SPECIES	27	ENSGT00940000155795	ENSGT00950000183112.b.b.a	ENSGT00950000186203	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT00550000074892	ENSGT00940000165572	ENSGT00940000156524	ENSGT00530000064050	ENSGT00940000154703	ENSGT00390000017503	ENSGT00940000158734	ENSGT00390000010811	ENSGT00940000160002	ENSGT00390000003488.b	ENSGT00940000158641
Elapidae	ANCESTRAL SPECIES	25	ENSGT00950000186203	ENSGT00950000183112.b.b.a	ENSGT00940000161215	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22
Elapidae_a	ANCESTRAL SPECIES	51	ENSGT00950000186203	ENSGT00940000161215	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028.k #14	ENSGT00550000075028.l #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22
Blue-lipped sea krait	MODERN SPECIES	7731										ENSLLTG00000005021 #14	PLEKHO1 (ENSLLTG00000005628) #15	ANP32E (ENSLLTG00000005633) #16	CA14 (ENSLLTG00000005646) #17	CIART (ENSLLTG00000005656) #20	MRPS21 (ENSLLTG00000005663) #21	PRPF3 (ENSLLTG00000005671) #22
Acanthophiinae	ANCESTRAL SPECIES	51	ENSGT00950000183112.b.b.a	ENSGT00950000186203	ENSGT00940000161215	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028.l #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22
Mainland tiger snake	MODERN SPECIES	271	ENSNSUG00000008170	ENSNSUG00000008171	ENSNSUG00000008172	ENSNSUG00000008173	BOLA1 (ENSNSUG00000008174) #9	SV2A (ENSNSUG00000008175) #10	SF3B4 (ENSNSUG00000008240) #11	MTMR11 (ENSNSUG00000008241) #12	OTUD7B (ENSNSUG00000008243) #13	VPS45 (ENSNSUG00000008252) #14	PLEKHO1 (ENSNSUG00000008321) #15	ANP32E (ENSNSUG00000008327) #16	CA14 (ENSNSUG00000008328) #17	CIART (ENSNSUG00000008329) #20	MRPS21 (ENSNSUG00000008330) #21	PRPF3 (ENSNSUG00000008331) #22
Eastern brown snake	MODERN SPECIES	133	ENSPTXG00000009601	ENSPTXG00000009602	ENSPTXG00000009604	BOLA1 (ENSPTXG00000009606) #9	SV2A (ENSPTXG00000009608) #10	SF3B4 (ENSPTXG00000009609) #11	MTMR11 (ENSPTXG00000009610) #12	OTUD7B (ENSPTXG00000009611) #13	VPS45 (ENSPTXG00000009612) #14	PLEKHO1 (ENSPTXG00000009613) #15	ANP32E (ENSPTXG00000009614) #16	ENSPTXG00000009615 #18	CA14 (ENSPTXG00000009616) #17	CIART (ENSPTXG00000009620) #20	MRPS21 (ENSPTXG00000009627) #21	PRPF3 (ENSPTXG00000009628) #22
Indian cobra	MODERN SPECIES	17	ENSNNAG00000015963	ENSNNAG00000015975	ENSNNAG00000015985	BOLA1 (ENSNNAG00000015987) #9	SV2A (ENSNNAG00000016009) #10	SF3B4 (ENSNNAG00000016086) #11	MTMR11 (ENSNNAG00000016103) #12	OTUD7B (ENSNNAG00000016147) #13	VPS45 (ENSNNAG00000016162) #14	PLEKHO1 (ENSNNAG00000016181) #15	ANP32E (ENSNNAG00000016195) #16	APH1A (ENSNNAG00000016205) #18	CA14 (ENSNNAG00000016244) #17	CIART (ENSNNAG00000016262) #20	MRPS21 (ENSNNAG00000016273) #21	PRPF3 (ENSNNAG00000010289) #22
Lizard	MODERN SPECIES	1400														CIART (ENSACAG00000003281) #20	MRPS21 (ENSACAG00000039268) #21	PRPF3 (ENSACAG00000003176) #22	RPRD2 (ENSACAG00000003131) #23	ENSACAG00000003076
Laterata	ANCESTRAL SPECIES	35	ENSGT00950000183112.b.b.a	ENSGT00940000161215	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT00550000074892	ENSGT00940000165572	ENSGT00940000156524	ENSGT00960000189065	ENSGT00530000064050	ENSGT00940000154703	ENSGT00390000017503	ENSGT00940000158734	ENSGT00390000010811	ENSGT00940000160002	ENSGT00390000003488.b
Argentine black and white tegu	MODERN SPECIES	78	ENSSMRG00000007852	ENSSMRG00000007856	ENSSMRG00000007864	BOLA1 (ENSSMRG00000007868) #9	SV2A (ENSSMRG00000007870) #10	SF3B4 (ENSSMRG00000007878) #11	MTMR11 (ENSSMRG00000007881) #12	OTUD7B (ENSSMRG00000007889) #13	VPS45 (ENSSMRG00000007898) #14	PLEKHO1 (ENSSMRG00000007902) #15	ANP32E (ENSSMRG00000007909) #16	APH1A (ENSSMRG00000007917) #18	CA14 (ENSSMRG00000007920) #17	CIART (ENSSMRG00000008013) #20	MRPS21 (ENSSMRG00000008015) #21	PRPF3 (ENSSMRG00000008016) #22	RPRD2 (ENSSMRG00000008019) #23	ENSSMRG00000008037	ECM1 (ENSSMRG00000010077) #25	ADAMTSL4 (ENSSMRG00000010079) #27	PI4KB (ENSSMRG00000010084)	ENSSMRG00000010092	ZNF687 (ENSSMRG00000010095)	PSMD4 (ENSSMRG00000010098)	PIP5K1A (ENSSMRG00000010099)	VPS72 (ENSSMRG00000010100)	TMOD4 (ENSSMRG00000010101)	SCNM1 (ENSSMRG00000010104)	LYSMD1 (ENSSMRG00000010106)	TNFAIP8L2 (ENSSMRG00000010107)	ENSSMRG00000010108
tuatara	MODERN SPECIES	1930	ENSSPUG00000001204	BOLA1 (ENSSPUG00000001195) #9	SV2A (ENSSPUG00000001040) #10	SF3B4 (ENSSPUG00000001028) #11	ENSSPUG00000001025	MTMR11 (ENSSPUG00000000998) #12	OTUD7B (ENSSPUG00000000961) #13	VPS45 (ENSSPUG00000000947) #14	PLEKHO1 (ENSSPUG00000000927) #15	ANP32E (ENSSPUG00000000918) #16	ENSSPUG00000000905	GOT2 (ENSSPUG00000000897)	APH1A (ENSSPUG00000000880) #18	CA14 (ENSSPUG00000000821) #17	MRPS21 (ENSSPUG00000000814) #21	PRPF3 (ENSSPUG00000000809) #22	ENSSPUG00000000795 #23	ENSSPUG00000000604	ECM1 (ENSSPUG00000000589) #25	ENSSPUG00000000586	ENSSPUG00000000582	ENSSPUG00000000575 #27	PI4KB (ENSSPUG00000000554)	ENSSPUG00000000431	ENSSPUG00000000418	ZNF687 (ENSSPUG00000000413)	PSMD4 (ENSSPUG00000000388)	PIP5K1A (ENSSPUG00000000161)	TMOD4 (ENSSPUG00000000085)	SCNM1 (ENSSPUG00000000075)	LYSMD1 (ENSSPUG00000000071)
Archelosauria	ANCESTRAL SPECIES	27	ENSGT00940000161215.hc.a	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT01000000215168	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT01040000240780	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a
Cryptodira	ANCESTRAL SPECIES	20	ENSGT00390000012412	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT01000000215168.a.b.b	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000154969.a	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT01040000240780	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a
Testudinoidea	ANCESTRAL SPECIES	17	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT01000000215168.a.a.a.b	ENSGT01010000223749.c	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000154969.a	ENSGT00390000006215 #25	ENSGT01090000260003.a.b.b.a.a.a.b.b.b #28	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b.a #28	ENSGT00940000155413 #29	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176.l #32	ENSGT00940000155176.k.a.a #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT01040000240780
Emydidae	ANCESTRAL SPECIES	18	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT01000000215168.a.a.a.b	ENSGT01010000223749.c	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000154969.a	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b.a #28	ENSGT00940000155413 #29	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176.l #32	ENSGT00940000155176.k.a.a #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT01040000240780	ENSGT00940000157471 #37
Three-toed box turtle	MODERN SPECIES	102	ENSTMTG00000003234	BOLA1 (ENSTMTG00000003267) #9	SV2A (ENSTMTG00000003281) #10	SF3B4 (ENSTMTG00000003355) #11	MTMR11 (ENSTMTG00000003371) #12	OTUD7B (ENSTMTG00000003400) #13	VPS45 (ENSTMTG00000003440) #14	PLEKHO1 (ENSTMTG00000003484) #15	ANP32E (ENSTMTG00000003525) #16	ENSTMTG00000003550	ENSTMTG00000003565	APH1A (ENSTMTG00000003583) #18	ENSTMTG00000003596 #17	CIART (ENSTMTG00000003619) #20	MRPS21 (ENSTMTG00000003635) #21	PRPF3 (ENSTMTG00000003651) #22	RPRD2 (ENSTMTG00000003690) #23	ENSTMTG00000003936	ECM1 (ENSTMTG00000007038) #25	ENSTMTG00000007077 #28	ENSA (ENSTMTG00000007092) #29	ENSTMTG00000007103	GOLPH3L (ENSTMTG00000007124) #30	ENSTMTG00000007143 #31	ENSTMTG00000007160 #32	CTSK (ENSTMTG00000007192) #33	ARNT (ENSTMTG00000007214) #34	ENSTMTG00000007315	SETDB1 (ENSTMTG00000007340) #37	CERS2 (ENSTMTG00000007401)	ANXA9 (ENSTMTG00000007428)
painted turtle	MODERN SPECIES	738	SF3B4 (ENSCPBG00000008041) #11	MTMR11 (ENSCPBG00000008053) #12	OTUD7B (ENSCPBG00000008074) #13	VPS45 (ENSCPBG00000008102) #14	PLEKHO1 (ENSCPBG00000008118) #15	ANP32E (ENSCPBG00000008122) #16	ENSCPBG00000008128	ENSCPBG00000008136	ENSCPBG00000008141	ENSCPBG00000008145	ENSCPBG00000008160	APH1A (ENSCPBG00000008178) #18	CA14 (ENSCPBG00000008191) #17	CIART (ENSCPBG00000008205) #20	MRPS21 (ENSCPBG00000008212) #21	PRPF3 (ENSCPBG00000008216) #22	RPRD2 (ENSCPBG00000008228) #23	ENSCPBG00000008240	ECM1 (ENSCPBG00000008276) #25	ADAMTSL4 (ENSCPBG00000008567) #27	ENSCPBG00000008588 #28	ENSA (ENSCPBG00000008598) #29	ENSCPBG00000008603	GOLPH3L (ENSCPBG00000008616) #30	HORMAD1 (ENSCPBG00000008626) #31	ENSCPBG00000008637 #32	ENSCPBG00000008648 #32	CTSK (ENSCPBG00000008661) #33	ARNT (ENSCPBG00000008682) #34	ENSCPBG00000008707	SETDB1 (ENSCPBG00000008716) #37
Testudinidae	ANCESTRAL SPECIES	3	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT01000000215168.a.b.b	ENSGT01000000215168.a.a.a.a	ENSGT01010000223749.c	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000154969.a	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b.b #28	ENSGT00940000155413 #29	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176.l #32	ENSGT00940000155176.k.a.a #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT01040000240780	ENSGT00940000157471 #37
Goode s thornscrub tortoise	MODERN SPECIES	16	MTMR11 (ENSGEVG00005013232) #12	OTUD7B (ENSGEVG00005013347) #13	VPS45 (ENSGEVG00005013432) #14	PLEKHO1 (ENSGEVG00005013486) #15	ANP32E (ENSGEVG00005013581) #16	ENSGEVG00005013610	ENSGEVG00005013639	ENSGEVG00005013683	ENSGEVG00005013716	ENSGEVG00005013772	ENSGEVG00005013824	APH1A (ENSGEVG00005013875) #18	CA14 (ENSGEVG00005013955) #17	CIART (ENSGEVG00005014432) #20	MRPS21 (ENSGEVG00005014452) #21	PRPF3 (ENSGEVG00005014482) #22	RPRD2 (ENSGEVG00005014526) #23	ENSGEVG00005014603	ECM1 (ENSGEVG00005014720) #25	ADAMTSL4 (ENSGEVG00005015036) #27	MCL1 (ENSGEVG00005016126) #28	ENSA (ENSGEVG00005016162) #29	ENSGEVG00005016208	GOLPH3L (ENSGEVG00005016244) #30	ENSGEVG00005016267 #31	ENSGEVG00005016308 #32	CTSS (ENSGEVG00005016424) #32	CTSK (ENSGEVG00005016496) #33	ARNT (ENSGEVG00005016585) #34	ENSGEVG00005016666	SETDB1 (ENSGEVG00005016733) #37
Abingdon island giant tortoise	MODERN SPECIES	1483									ENSCABG00000010864	ENSCABG00000010863	ENSCABG00000010861	APH1A (ENSCABG00000010860) #18	CA14 (ENSCABG00000010859) #17	CIART (ENSCABG00000010858) #20	MRPS21 (ENSCABG00000010856) #21	PRPF3 (ENSCABG00000010852) #22	RPRD2 (ENSCABG00000010851) #23	ENSCABG00000008715	ECM1 (ENSCABG00000008692) #25	ADAMTSL4 (ENSCABG00000008690) #27	MCL1 (ENSCABG00000008688) #28
Chinese turtle	MODERN SPECIES	737														CIART (ENSPSIG00000013681) #20	MRPS21 (ENSPSIG00000014569) #21	PRPF3 (ENSPSIG00000014877) #22	RPRD2 (ENSPSIG00000015034) #23	ENSPSIG00000015501	ENSPSIG00000008483 #17
Archosauria	ANCESTRAL SPECIES	36	ENSGT00940000158522	ENSGT00950000183112.b.b	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT01000000215168	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00940000166610	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT01040000240780	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00390000016607.b	ENSGT00450000040262
Aves	ANCESTRAL SPECIES	36	ENSGT00940000158522	ENSGT00950000183112.b.b	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT01000000215168	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00940000166610	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT01040000240780	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00390000016607.b	ENSGT00450000040262
Neognathae	ANCESTRAL SPECIES	28	ENSGT00950000183112.b.b	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT01000000215168	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00940000164936	ENSGT00940000166610	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00510000047412.a	ENSGT00940000160132	ENSGT00940000159088	ENSGT00390000016256	ENSGT00530000064067	ENSGT00390000015248	ENSGT00940000156698	ENSGT00900000141033.b.b
Galloanserae	ANCESTRAL SPECIES	31	ENSGT00940000161712	ENSGT00730000111174	ENSGT00940000158886	ENSGT00940000160444	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.e.b.a	ENSGT01100000263515.a.b.a.b.b.h.e.b.b	ENSGT00390000006372	ENSGT00940000159779	ENSGT01050000244808.D.fb.a	ENSGT01000000215168	ENSGT00390000002049.c.a #18	ENSGT00940000164936	ENSGT00940000156893 #17	ENSGT00940000166610	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00510000047412.a	ENSGT00940000160132	ENSGT00940000159088	ENSGT00390000016256	ENSGT00530000064067	ENSGT00390000015248	ENSGT00940000156698	ENSGT00900000141033.b.b
Phasianidae	ANCESTRAL SPECIES	32	ENSGT00940000161712	ENSGT00730000111174	ENSGT00940000158886	ENSGT00940000160444	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.e.b.a	ENSGT01100000263515.a.b.a.b.b.h.e.b.b	ENSGT00390000006372	ENSGT00940000159779	ENSGT01050000244808.D.fb.a	ENSGT01000000215168	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00940000164936	ENSGT00940000166610	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00390000014874	ENSGT00510000047412.a	ENSGT00940000160132	ENSGT00940000159088	ENSGT00390000016256	ENSGT00530000064067	ENSGT00390000015248	ENSGT00940000156698
Japanese quail	MODERN SPECIES	17	VSIG8 (ENSCJPG00005015184)	CFAP45 (ENSCJPG00005015183)	TAGLN2 (ENSCJPG00005015182)	IGSF9 (ENSCJPG00005015180)	DUSP23 (ENSCJPG00005015178)	ENSCJPG00005015177	ACKR1 (ENSCJPG00005015175)	CADM3 (ENSCJPG00005015173)	ENSCJPG00005015172	ENSCJPG00005015169	ENSCJPG00005015161	APH1A (ENSCJPG00005015160) #18	CA14 (ENSCJPG00005015159) #17	ENSCJPG00005015157	ENSCJPG00005015156	PRPF3 (ENSCJPG00005015093) #22	RPRD2 (ENSCJPG00005015092) #23	ENSCJPG00005015091	ENSCJPG00005015090 #25	MCL1 (ENSCJPG00005015089) #28	ENSA (ENSCJPG00005015088) #29	GOLPH3L (ENSCJPG00005015087) #30	HORMAD1 (ENSCJPG00005015086) #31	ENSCJPG00005015085	KHDC4 (ENSCJPG00005015082)	RIT1 (ENSCJPG00005015081)	SYT11 (ENSCJPG00005015080)	ENSCJPG00005014240	MSTO1 (ENSCJPG00005014239)	DAP3 (ENSCJPG00005014238)	ASH1L (ENSCJPG00005014237)
Phasianidae_b	ANCESTRAL SPECIES	31	ENSGT00940000161712	ENSGT00730000111174	ENSGT00940000158886	ENSGT00940000160444	ENSGT00940000161329	ENSGT01100000263515.a.b.a.b.b.h.e.b.a	ENSGT01100000263515.a.b.a.b.b.h.e.b.b	ENSGT00390000006372	ENSGT00940000159779	ENSGT01050000244808.D.fb.a	ENSGT01000000215168	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00940000164936	ENSGT00940000166610	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00390000014874	ENSGT00510000047412.a	ENSGT00940000160132	ENSGT00940000159088	ENSGT00390000016256	ENSGT00530000064067	ENSGT00390000015248	ENSGT00940000156698
Turkey	MODERN SPECIES	19	ENSMGAG00000001197	ENSMGAG00000020754	ENSMGAG00000000670	ENSMGAG00000021595	ENSMGAG00000019667	ENSMGAG00000018652	ENSMGAG00000017577	ENSMGAG00000018241	ENSMGAG00000000678	ENSMGAG00000018115	ENSMGAG00000022435	ENSMGAG00000000683 #18	ENSMGAG00000000694 #17	ENSMGAG00000000676	ENSMGAG00000000705	PRPF3 (ENSMGAG00000000707) #22	RPRD2 (ENSMGAG00000000731) #23	ECM1 (ENSMGAG00000020763) #25	MCL1 (ENSMGAG00000000736) #28	ENSA (ENSMGAG00000000738) #29	GOLPH3L (ENSMGAG00000000741) #30	HORMAD1 (ENSMGAG00000000746) #31	ENSMGAG00000000758	KHDC4 (ENSMGAG00000000764)	RIT1 (ENSMGAG00000000780)	SYT11 (ENSMGAG00000000792)	ENSMGAG00000000803	ENSMGAG00000000870	DAP3 (ENSMGAG00000000884)	ENSMGAG00000018283	ENSMGAG00000000905
Chicken	MODERN SPECIES	17	CFAP45 (ENSGALG00010028689)	TAGLN2 (ENSGALG00010028686)	IGSF9 (ENSGALG00010028878)	DUSP23 (ENSGALG00010028875)	CRPL2 (ENSGALG00010028683)	CRPL1 (ENSGALG00010028874)	ENSGALG00010028678	CADM3 (ENSGALG00010028671)	FCRL4 (ENSGALG00010028662)	ENSGALG00010028649	APH1A (ENSGALG00010028642) #18	ENSGALG00010028619	ENSGALG00010028613	ENSGALG00010028611 #17	MRPS21 (ENSGALG00010028609)	PRPF3 (ENSGALG00010028606) #22	RPRD2 (ENSGALG00010028472) #23	ENSGALG00010028464	ENSGALG00010028461 #25	MCL1 (ENSGALG00010028459) #28	ENSA (ENSGALG00010028455) #29	GOLPH3L (ENSGALG00010028452) #30	HORMAD1 (ENSGALG00010028866) #31	EFCAB12 (ENSGALG00010028449)	RIT1 (ENSGALG00010028448)	SYT11 (ENSGALG00010028445)	ENSGALG00010028437	MSTO1 (ENSGALG00010028433)	DAP3 (ENSGALG00010028425)	ASH1L (ENSGALG00010028392)	RUSC1 (ENSGALG00010028380)
Anatidae	ANCESTRAL SPECIES	81															ENSGT00940000166610	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000154566	ENSGT00960000189418	ENSGT00410000026290.i	ENSGT00940000162656	ENSGT00940000155399	ENSGT00940000161509	ENSGT00940000157244	ENSGT00940000161732	ENSGT00940000165149
Duck	MODERN SPECIES	17	TMEM79 (ENSAPLG00000028836)	PIP5K1A (ENSAPLG00000015266)	IGSF9 (ENSAPLG00000027030)	DUSP23 (ENSAPLG00000005043)	ENSAPLG00000017213	ENSAPLG00000001080	ACKR1 (ENSAPLG00000025585)	CADM3 (ENSAPLG00000017996)	ENSAPLG00000020034	ANP32E (ENSAPLG00000002620) #16	PLEKHO1 (ENSAPLG00000002526) #15	VPS45 (ENSAPLG00000002351) #14	OTUD7B (ENSAPLG00000004627) #13	ENSAPLG00000019128	ETV3 (ENSAPLG00000023696)	PRPF3 (ENSAPLG00000002440) #22	ENSAPLG00000002706 #23	ENSAPLG00000021823	ENSA (ENSAPLG00000010036) #29	GOLPH3L (ENSAPLG00000009987) #30	HORMAD1 (ENSAPLG00000009738) #31	SMG5 (ENSAPLG00000010263)	ENSAPLG00000022171	LMNA (ENSAPLG00000009487)	MEX3A (ENSAPLG00000009476)	UBQLN4 (ENSAPLG00000009055)	IQGAP3 (ENSAPLG00000007690)	MEF2D (ENSAPLG00000007271)	HAPLN2 (ENSAPLG00000016119)	ENSAPLG00000030819
Pink-footed goose	MODERN SPECIES	614															ENSABRG00000021303	PRPF3 (ENSABRG00000021295) #22	RPRD2 (ENSABRG00000021290) #23	ENSABRG00000021285
Neognathae_b	ANCESTRAL SPECIES	34	ENSGT00950000183112.b.b	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT01000000215168	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00940000164936	ENSGT00940000166610	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25
Passeriformes	ANCESTRAL SPECIES	36	ENSGT00940000158522	ENSGT00950000186203	ENSGT00950000183112.b.b	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00940000164936	ENSGT00940000166610	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT01040000240780	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000160112	ENSGT00390000009895	ENSGT00940000158641	ENSGT00530000063074.a	ENSGT00940000158341
Passeriformes_d	ANCESTRAL SPECIES	26	ENSGT01100000263845	ENSGT00940000158522	ENSGT00950000186203	ENSGT00950000183112.b.b	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00940000166610	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT01040000240780	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000160112	ENSGT00940000158641	ENSGT00530000063074.a	ENSGT00940000158341	ENSGT00940000155176 #32
Passeriformes_g	ANCESTRAL SPECIES	27	ENSGT01100000263845	ENSGT00940000158522	ENSGT00950000186203	ENSGT00950000183112.b.b	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00940000166610	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT01040000240780	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000160112	ENSGT00940000158641	ENSGT00530000063074.a	ENSGT00940000158341	ENSGT00940000155176 #32
Passeroidea	ANCESTRAL SPECIES	28	ENSGT01100000263845	ENSGT00940000158522	ENSGT00950000186203	ENSGT00950000183112.b.b	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00940000166610	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e	ENSGT00390000006215 #25	ENSGT00940000157759 #33	ENSGT00940000157585 #34	ENSGT01040000240780	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00390000016607.b	ENSGT00450000040262	ENSGT00940000160112	ENSGT00940000158641	ENSGT00530000063074.a	ENSGT00940000158341	ENSGT00940000155176 #32
Common canary	MODERN SPECIES	81	ENSSCAG00000011758	SNX27 (ENSSCAG00000011769)	TXNIP (ENSSCAG00000011781)	HJV (ENSSCAG00000011784)	ENSSCAG00000011787	SF3B4 (ENSSCAG00000011792) #11	ENSSCAG00000011796 #12	OTUD7B (ENSSCAG00000011804) #13	VPS45 (ENSSCAG00000011835) #14	PLEKHO1 (ENSSCAG00000011918) #15	ANP32E (ENSSCAG00000011934) #16	CA14 (ENSSCAG00000011941) #17	APH1A (ENSSCAG00000011945) #18	ENSSCAG00000011949	ENSSCAG00000011951	PRPF3 (ENSSCAG00000011963) #22	ENSSCAG00000011971 #23	CTSK (ENSSCAG00000011979) #33	ARNT (ENSSCAG00000011985) #34	SETDB1 (ENSSCAG00000012005) #37	CERS2 (ENSSCAG00000012013)	PRUNE1 (ENSSCAG00000012016)	MLLT11 (ENSSCAG00000012022)	ENSSCAG00000012029	MSTO1 (ENSSCAG00000012061)	ASH1L (ENSSCAG00000012148)	ENSSCAG00000012172	FDPS (ENSSCAG00000012185)	ENSSCAG00000012198	CLK2 (ENSSCAG00000012209)	ENSSCAG00000012237
Zebra finch	MODERN SPECIES	18	RBM8A (ENSTGUG00000004447)	ENSTGUG00000020632	ENSTGUG00000021938	HJV (ENSTGUG00000013701)	BOLA1 (ENSTGUG00000022266) #9	SV2A (ENSTGUG00000025334) #10	SF3B4 (ENSTGUG00000019975) #11	MTMR11 (ENSTGUG00000004470) #12	OTUD7B (ENSTGUG00000004479) #13	VPS45 (ENSTGUG00000004493) #14	PLEKHO1 (ENSTGUG00000019427) #15	ANP32E (ENSTGUG00000004542) #16	APH1A (ENSTGUG00000020297) #18	CA14 (ENSTGUG00000020197) #17	ENSTGUG00000028735	PRPF3 (ENSTGUG00000004552) #22	RPRD2 (ENSTGUG00000004590) #23	ENSTGUG00000004602	ECM1 (ENSTGUG00000021608) #25	CTSK (ENSTGUG00000027582) #33	ARNT (ENSTGUG00000004647) #34	ENSTGUG00000023543	SETDB1 (ENSTGUG00000004684) #37	CERS2 (ENSTGUG00000004716)	MINDY1 (ENSTGUG00000023060)	PRUNE1 (ENSTGUG00000004774)	CDC42SE1 (ENSTGUG00000004784)	SEMA6C (ENSTGUG00000025575)	ENSTGUG00000021515	ENSTGUG00000026016	ARHGEF2 (ENSTGUG00000021755)
Medium ground finch	MODERN SPECIES	314						LIX1L (ENSGFOG00000007433)	RBM8A (ENSGFOG00000007446)	TXNIP (ENSGFOG00000007450)	SV2A (ENSGFOG00000007454) #10	ENSGFOG00000007463	OTUD7B (ENSGFOG00000007466) #13	VPS45 (ENSGFOG00000007475) #14	PLEKHO1 (ENSGFOG00000007477) #15	ANP32E (ENSGFOG00000007486) #16	APH1A (ENSGFOG00000007489) #18	PRPF3 (ENSGFOG00000007494) #22	ENSGFOG00000007506 #23	CTSK (ENSGFOG00000007554) #33	ARNT (ENSGFOG00000007566) #34	SETDB1 (ENSGFOG00000007653) #37	CERS2 (ENSGFOG00000007678)	PRUNE1 (ENSGFOG00000007714)	ENSGFOG00000008349	MLLT11 (ENSGFOG00000008360)	ARHGEF2 (ENSGFOG00000008683)	ENSGFOG00000008698 #32	RPS27 (ENSGFOG00000008709)	NDUFS2 (ENSGFOG00000008715)
Great tit	MODERN SPECIES	18	ENSPMJG00000001640	TXNIP (ENSPMJG00000001647)	ENSPMJG00000001651	HJV (ENSPMJG00000001653)	BOLA1 (ENSPMJG00000001655) #9	SV2A (ENSPMJG00000001656) #10	SF3B4 (ENSPMJG00000001660) #11	MTMR11 (ENSPMJG00000001664) #12	OTUD7B (ENSPMJG00000001674) #13	VPS45 (ENSPMJG00000001675) #14	PLEKHO1 (ENSPMJG00000001683) #15	ANP32E (ENSPMJG00000001694) #16	ENSPMJG00000001699 #17	ENSPMJG00000001707	ENSPMJG00000001710	PRPF3 (ENSPMJG00000001723) #22	RPRD2 (ENSPMJG00000001737) #23	ENSPMJG00000001784	ECM1 (ENSPMJG00000001797) #25	CTSK (ENSPMJG00000001799) #33	ARNT (ENSPMJG00000002875) #34	ENSPMJG00000002931	CERS2 (ENSPMJG00000002934)	MINDY1 (ENSPMJG00000002938)	PRUNE1 (ENSPMJG00000002944)	ENSPMJG00000002949	MLLT11 (ENSPMJG00000002952)	SEMA6C (ENSPMJG00000002953)	NUDT17 (ENSPMJG00000002961)	ENSPMJG00000002967	ARHGEF2 (ENSPMJG00000002972)
Neognathae_c	ANCESTRAL SPECIES	36	ENSGT00950000183112.b.b	ENSGT00940000165753	ENSGT00510000048165 #9	ENSGT00950000182940.b.a.b #10	ENSGT00870000136537 #11	ENSGT00940000160276 #12	ENSGT00940000159172 #13	ENSGT00550000075028 #14	ENSGT00530000063760.b #15	ENSGT00950000182907.a.a #16	ENSGT01000000215168	ENSGT00390000002049.c.a #18	ENSGT00940000156893 #17	ENSGT00940000164936	ENSGT00940000166610	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348.e
Kakapo	MODERN SPECIES	60	ENSSHBG00005016791	MEX3A (ENSSHBG00005016781)	LMNA (ENSSHBG00005016768)	ENSSHBG00005016763	ENSSHBG00005016749	SLC25A44 (ENSSHBG00005016737)	PMF1 (ENSSHBG00005016733)	BGLAP (ENSSHBG00005016730)	SMG5 (ENSSHBG00005015374)	TMEM79 (ENSSHBG00005015292)	CCT3 (ENSSHBG00005015253)	SSR2 (ENSSHBG00005015244)	APH1A (ENSSHBG00005015233) #18	ENSSHBG00005015053 #17	ENSSHBG00005015032	PRPF3 (ENSSHBG00005015012) #22	RPRD2 (ENSSHBG00005014997) #23	ENSSHBG00005014679
Golden eagle	MODERN SPECIES	25	ENSACCG00020002439	BOLA1 (ENSACCG00020002457) #9	SV2A (ENSACCG00020002500) #10	SF3B4 (ENSACCG00020002561) #11	MTMR11 (ENSACCG00020002599) #12	OTUD7B (ENSACCG00020002629) #13	VPS45 (ENSACCG00020002675) #14	PLEKHO1 (ENSACCG00020002713) #15	ANP32E (ENSACCG00020002729) #16	ENSACCG00020002744	ENSACCG00020002755	APH1A (ENSACCG00020002773) #18	CA14 (ENSACCG00020002807) #17	ENSACCG00020002847	ENSACCG00020002862	PRPF3 (ENSACCG00020002880) #22	RPRD2 (ENSACCG00020002913) #23	ENSACCG00020002960	ECM1 (ENSACCG00020003013) #25	RPS27 (ENSACCG00020003035)	RAB13 (ENSACCG00020003047)	JTB (ENSACCG00020003067)	CREB3L4 (ENSACCG00020003090)	SLC39A1 (ENSACCG00020003108)	CRTC2 (ENSACCG00020003135)	GATAD2B (ENSACCG00020003206)	INTS3 (ENSACCG00020003262)	ENSACCG00020003367	ILF2 (ENSACCG00020003414)	SNAPIN (ENSACCG00020003435)	ENSACCG00020003491
African ostrich	MODERN SPECIES	235									OTUD7B (ENSSCUG00000004558) #13	VPS45 (ENSSCUG00000004562) #14	PLEKHO1 (ENSSCUG00000004572) #15	ANP32E (ENSSCUG00000004582) #16	ENSSCUG00000004591	APH1A (ENSSCUG00000004598) #18	ENSSCUG00000004602	PRPF3 (ENSSCUG00000004608) #22	RPRD2 (ENSSCUG00000004616) #23
Anura	ANCESTRAL SPECIES	182															ENSGT00500000045038 #21	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000154969.a	ENSGT00390000006215 #25	ENSGT00940000161136 #27	ENSGT01090000260003.a.b.b.a.a.a.b.b #28	ENSGT00940000155413 #29	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #30	ENSGT00390000018130.a.a.a #31	ENSGT00940000155176 #32	ENSGT00940000157759.b #33	ENSGT00940000157759.a #33	ENSGT00940000157585 #34	ENSGT00960000186669	ENSGT00940000157471 #37
Leishan spiny toad	MODERN SPECIES	354																PRPF3 (ENSLLEG00000010974) #22
Frog	MODERN SPECIES	8	nr2f5 (ENSXETG00000011046)	hjv (ENSXETG00000040701)	txnip (ENSXETG00000011050)	polr3gl (ENSXETG00000011053)	ankrd34a (ENSXETG00000011054)	ENSXETG00000041795	ENSXETG00000036611	ENSXETG00000047155	ENSXETG00000045399	ENSXETG00000036193	ENSXETG00000035193	ENSXETG00000043317	ENSXETG00000042982	ENSXETG00000028037	mrps21 (ENSXETG00000028038) #21	prpf3 (ENSXETG00000018654) #22	ENSXETG00000047709	rprd2 (ENSXETG00000018652) #23	tars2 (ENSXETG00000018640)	ECM1 (ENSXETG00000036393) #25	adamtsl4 (ENSXETG00000018086) #27	ENSXETG00000047405	mcl1 (ENSXETG00000008910) #28	ensa (ENSXETG00000026684) #29	onecut1.2 (ENSXETG00000040174)	golph3l (ENSXETG00000008912) #30	hormad1 (ENSXETG00000008913) #31	ctss (ENSXETG00000008914) #32	XB986811 [provisional:ctsk] (ENSXETG00000008916) #33	ENSXETG00000048153	ctsk (ENSXETG00000035558) #33
Coelacanth	MODERN SPECIES	1393													ENSLACG00000011683	MRPS21 (ENSLACG00000011137) #21	ENSLACG00000011015	PRPF3 (ENSLACG00000010541) #22	RPRD2 (ENSLACG00000009750) #23	CA14 (ENSLACG00000008879) #17	ENSLACG00000008646 #18	RAB13 (ENSLACG00000008103)	RPS27 (ENSLACG00000007901)	NUP210L (ENSLACG00000004865)	ENSLACG00000002856
Actinopterygii	ANCESTRAL SPECIES	223				ENSGT00940000158423	ENSGT00940000157203	ENSGT00390000002799	ENSGT00940000157585 #34	ENSGT00960000186669	ENSGT00940000157471 #37	ENSGT01030000234515.a.b.a.a	ENSGT00940000157006	ENSGT01030000234542.b.b.a.a.b	ENSGT00390000002049.d ##18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00390000011497 #22	ENSGT00950000183094.a #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716	ENSGT00940000154201.a.a.b.d	ENSGT00940000164119
Neopterygii	ANCESTRAL SPECIES	45	ENSGT00940000156591	ENSGT00940000157357.f	ENSGT00390000005646	ENSGT00940000157507	ENSGT00940000155603.A.b.d	ENSGT00940000155603.A.b.c	ENSGT00940000159608	ENSGT00950000182908.A	ENSGT00940000159154	ENSGT00390000006096.a.b	ENSGT00940000157006	ENSGT01030000234542.b.b.a.a.b	ENSGT00390000002049.d ##18	ENSGT00940000156893 #17	ENSGT00390000018360 #20	ENSGT00390000011497 #22	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716	ENSGT00940000154201.a.a.b.d	ENSGT00940000164119	ENSGT01030000234515.a.b.a.a	ENSGT00940000157471 #37	ENSGT00940000157585 #34	ENSGT00940000158423	ENSGT00390000002799	ENSGT00940000157203	ENSGT00390000009464	ENSGT00390000015248	ENSGT00940000156698
Osteoglossocephalai	ANCESTRAL SPECIES	38	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234542.b.b.a.a.a.a	ENSGT00390000002049.d ##18	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00940000177218	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000164374.A	ENSGT00940000154947.k	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219
Clupeocephala	ANCESTRAL SPECIES		ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT01030000234542.b.b.a.a.b	ENSGT00390000002049.d ##18	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00940000177218	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000164374.A	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219
Otomorpha	ANCESTRAL SPECIES	14	ENSGT00940000177093	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT01030000234542.b.b.a.a.a.a	ENSGT00390000002049.d ##18	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00940000177218	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000164374.A.c.b	ENSGT00940000154947.l	ENSGT01060000248708.a	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219
Clupeiformes	ANCESTRAL SPECIES		ENSGT00940000159441.k	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000164374.A.c.a.a	ENSGT00940000156698.d	ENSGT01060000251363	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000164374.A.c.b.b	ENSGT00940000164374.A.c.b.a	ENSGT00940000154947.l	ENSGT01060000248708.a	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219
Atlantic herring	MODERN SPECIES	2	fdps (ENSCHAG00000009413)	ENSCHAG00000009378	ENSCHAG00000009360	ENSCHAG00000009337	ENSCHAG00000009306	ENSCHAG00000009294	dap3 (ENSCHAG00000009237)	GBA1 (ENSCHAG00000009079)	rnf115a (ENSCHAG00000009059)	polr3c (ENSCHAG00000008491)	ITGA10 (ENSCHAG00000008460)	crabp2a (ENSCHAG00000008445)	ENSCHAG00000008428	ca14 (ENSCHAG00000008369) #17	CIART (ENSCHAG00000008352) #20	prpf3 (ENSCHAG00000008244) #22	RPRD2 (ENSCHAG00000008220) #23	ENSCHAG00000007077	ENSCHAG00000007023 #27	CELF3 (ENSCHAG00000007001)	CERS2 (ENSCHAG00000006978)	skp1 (ENSCHAG00000006968)	arnt (ENSCHAG00000006547) #34	setdb1b (ENSCHAG00000006237) #37	CXCR5 (ENSCHAG00000006226)	trim108 (ENSCHAG00000006119)	trim108 (ENSCHAG00000006001)	clk2b (ENSCHAG00000005172)	cyp11c1 (ENSCHAG00000004600)	ENSCHAG00000004556	pklr (ENSCHAG00000002526)
Denticle herring	MODERN SPECIES	15	rcvrn2 (ENSDCDG00000005330)	fdps (ENSDCDG00000005308)	ENSDCDG00000005298	ENSDCDG00000005293	ASH1L (ENSDCDG00000005288)	GBA1 (ENSDCDG00000004773)	rnf115a (ENSDCDG00000004727)	polr3c (ENSDCDG00000004716)	ITGA10 (ENSDCDG00000004565)	polr3c (ENSDCDG00000004503)	ITGA10 (ENSDCDG00000004491)	crabp2a (ENSDCDG00000004489)	ENSDCDG00000004488	ca14 (ENSDCDG00000004486) #17	CIART (ENSDCDG00000004484) #20	prpf3 (ENSDCDG00000004010) #22	RPRD2 (ENSDCDG00000003973) #23	ENSDCDG00000003843	CERS2 (ENSDCDG00000003829)	arnt (ENSDCDG00000003664) #34	setdb1b (ENSDCDG00000003641) #37	trim108 (ENSDCDG00000003637)	trim108 (ENSDCDG00000003630)	clk2b (ENSDCDG00000002843)	ENSDCDG00000002806	cyp11c1 (ENSDCDG00000002499)	pklr (ENSDCDG00000002333)	ENSDCDG00000002327	zbtb7b (ENSDCDG00000002324)	ENSDCDG00000002322	khdc4 (ENSDCDG00000002319)
Otophysi	ANCESTRAL SPECIES	58	ENSGT00940000155952	ENSGT00940000155115.a.a.a.b	ENSGT01030000234564.a.a.a.a.a	ENSGT00390000017802.d	ENSGT00950000183156.a.b.b.b.b.a.d	ENSGT00950000183108.a.c	ENSGT00940000155112.B.a	ENSGT00940000155167.b.a.a	ENSGT00940000155167.b.b	ENSGT00940000159374	ENSGT00940000159514	ENSGT00940000159963	ENSGT00940000155778.B	ENSGT00390000000420	ENSGT00940000164936.a	ENSGT00390000011497 #22	ENSGT00950000183199.b	ENSGT00940000157811.b.a	ENSGT00940000156424.a	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00420000029769.a	ENSGT00940000160695
Characiphysae	ANCESTRAL SPECIES	49	ENSGT00500000044904.a.b.i.b	ENSGT00940000155115.a.a.a.b	ENSGT01030000234564.a.a.a.a.a	ENSGT00390000017802.d	ENSGT00950000183156.a.b.b.b.b.a.d	ENSGT00950000183108.a.c.c	ENSGT00940000155112.B.a	ENSGT00940000155167.b.a.a	ENSGT00940000155167.b.b	ENSGT00940000159374	ENSGT00940000159514	ENSGT00940000159963	ENSGT00940000155778.B	ENSGT00390000000420	ENSGT00940000164936.a	ENSGT00390000011497 #22	ENSGT00950000183199.b	ENSGT00940000157811.b.a	ENSGT00940000156424.a	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT00940000164178.db.a	ENSGT00390000012596.f	ENSGT00440000033742.a.a
Characiphysae_b	ANCESTRAL SPECIES	99	ENSGT00500000044904.a.b.i.b	ENSGT00940000155115.a.a.a.b	ENSGT01030000234564.a.a.a.a.a	ENSGT00390000017802.d	ENSGT00950000183156.a.b.b.b.b.a.d	ENSGT00950000183108.a.c.c	ENSGT00940000155112.B.a	ENSGT00940000155167.b.a.a	ENSGT00940000155167.b.b	ENSGT00940000159374	ENSGT00940000159514	ENSGT00940000159963	ENSGT00940000155778.B	ENSGT00390000000420	ENSGT00940000164936.a	ENSGT00390000011497 #22	ENSGT00950000183199.b	ENSGT00940000157811.b.a	ENSGT00940000156424.a	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT00940000164178.db.a	ENSGT00390000012596.f	ENSGT00440000033742.a.a	ENSGT00940000153801.a
Characoidei	ANCESTRAL SPECIES	60	ENSGT00940000155115.a.a.a.b	ENSGT01030000234564.a.a.a.a.a	ENSGT00390000017802.d	ENSGT00950000183156.a.b.b.b.b.a.d	ENSGT00950000183108.a.c.c	ENSGT00940000155112.B.a	ENSGT00940000162635.ob	ENSGT00940000155167.b.b	ENSGT00940000159374	ENSGT00940000159514	ENSGT00940000159963	ENSGT00940000155778.B	ENSGT00390000000420	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00950000183199.b	ENSGT00940000157811.b.a	ENSGT00940000156424.a	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A.u	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT00940000164178.db.a	ENSGT00390000012596.f	ENSGT00440000033742.a.a	ENSGT00940000153801.a
Red-bellied piranha	MODERN SPECIES	70	E2F3 (ENSPNAG00000001565)	mboat1 (ENSPNAG00000001569)	TMEM65 (ENSPNAG00000011182)	MTSS1 (ENSPNAG00000011302)	scgn (ENSPNAG00000001675)	CARMIL1 (ENSPNAG00000011382)	ENSPNAG00000001714	TNFRSF11B (ENSPNAG00000011418)	si:ch211-93i7.4 (ENSPNAG00000011397)	mal2 (ENSPNAG00000011425)	CCN3 (ENSPNAG00000011433)	enpp2 (ENSPNAG00000001739)	taf2 (ENSPNAG00000001742)	ca14 (ENSPNAG00000001753) #17	ENSPNAG00000001758 #20	prpf3 (ENSPNAG00000001799) #22	ice1 (ENSPNAG00000001809)	TENT4A (ENSPNAG00000011603)	ADCY2 (ENSPNAG00000001857)	DNAH5 (ENSPNAG00000001933)	ENSPNAG00000012018	ENSPNAG00000002082	CCR8 (ENSPNAG00000012062)	CCR8 (ENSPNAG00000002086)	ENSPNAG00000012073	cobl (ENSPNAG00000012144)	GRB10 (ENSPNAG00000002153)	ddc (ENSPNAG00000012267)	ENSPNAG00000012300	AGL (ENSPNAG00000012454)	ENSPNAG00000002266
Mexicana tetra	MODERN SPECIES	2	ENSAMXG00000037939	ENSAMXG00000007229	ENSAMXG00000025195	ENSAMXG00000035390	scgn (ENSAMXG00000037361)	CARMIL1 (ENSAMXG00000007246)	ENSAMXG00000040250	TNFRSF11B (ENSAMXG00000035635)	si:ch211-93i7.4 (ENSAMXG00000033176)	mal2 (ENSAMXG00000040616)	CCN3 (ENSAMXG00000035188)	enpp2 (ENSAMXG00000007268)	taf2 (ENSAMXG00000007296)	ca14 (ENSAMXG00000036060) #17	ENSAMXG00000038153 #20	prpf3 (ENSAMXG00000007306) #22	ice1 (ENSAMXG00000042159)	TENT4A (ENSAMXG00000039964)	ADCY2 (ENSAMXG00000038314)	ENSAMXG00000038886	DNAH5 (ENSAMXG00000007429)	ENSAMXG00000007530	ENSAMXG00000040867	ENSAMXG00000041813	ENSAMXG00000043119	CCR8 (ENSAMXG00000029794)	CX3CR1 (ENSAMXG00000032773)	cobl (ENSAMXG00000019415)	ENSAMXG00000036059	GRB10 (ENSAMXG00000019421)	ddc (ENSAMXG00000019455)
Electric eel	MODERN SPECIES	174	ube2ib (ENSEEEG00000011412)	cog7 (ENSEEEG00000011451)	kcnc3b (ENSEEEG00000011456)	ENSEEEG00000011457	SBK1 (ENSEEEG00000011458)	ENSEEEG00000011459	ENSEEEG00000011461	NLRC3 (ENSEEEG00000011464)	cluap1 (ENSEEEG00000011471)	ENSEEEG00000011474	enpp2 (ENSEEEG00000011475)	ENSEEEG00000011477	taf2 (ENSEEEG00000011482)	ca14 (ENSEEEG00000011858) #17	ENSEEEG00000011859	prpf3 (ENSEEEG00000011861) #22	ENSEEEG00000011864	TENT4A (ENSEEEG00000011867)	ADCY2 (ENSEEEG00000011871)	DNAH5 (ENSEEEG00000011873)	ENSEEEG00000011893
Channel catfish	MODERN SPECIES		ENSIPUG00000000591	ENSIPUG00000000594	ENSIPUG00000000600	ENSIPUG00000000610	ENSIPUG00000000617	ENSIPUG00000000620	ENSIPUG00000000623	CCR8 (ENSIPUG00000000625)	ENSIPUG00000000629	ENSIPUG00000000635	ENSIPUG00000000643	ENSIPUG00000000668	DNAH5 (ENSIPUG00000000709)	Adcy2 (ENSIPUG00000000788)	TENT4A (ENSIPUG00000000878)	PRPF3 (ENSIPUG00000000902) #22	ENSIPUG00000001009	ENSIPUG00000000997	ENSIPUG00000001016	ice1 (ENSIPUG00000001024)	ca14 (ENSIPUG00000001038) #17	taf2 (ENSIPUG00000001047)	ENPP2 (ENSIPUG00000001082)	ENSIPUG00000001113 #20	Pdcd6 (ENSIPUG00000001129)	si:ch211-196f5.2 (ENSIPUG00000001166)	ipo4 (ENSIPUG00000001185)	nanog (ENSIPUG00000001246)	tm9sf1 (ENSIPUG00000001255)	fen1 (ENSIPUG00000001277)	esco1 (ENSIPUG00000001346)
Cyprinoidei	ANCESTRAL SPECIES	86			ENSGT00940000155167.b.a.a	ENSGT00940000155167.b.b	ENSGT00940000159374	ENSGT00940000159514	ENSGT00940000155778.B	ENSGT00390000000420	ENSGT00940000157006.m	ENSGT01030000234542.b.b.a.a.a.a	ENSGT00390000002049.d ##18	ENSGT00940000156893 #17	ENSGT00390000018878	ENSGT00940000157873.c	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00950000183199.b	ENSGT00940000157811.b.a	ENSGT00940000156424.a	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00420000029769.a	ENSGT00940000160695	ENSGT00940000155365.a.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES																	ENSGT00390000011497.a #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00390000011497.a #22
Common carp reference	MODERN SPECIES	2	ADAMTS16 (ENSCCRG00000052575)	irx1a (ENSCCRG00000001427)	irx2a (ENSCCRG00000066625)	irx4a (ENSCCRG00000026641)	ENSCCRG00000062725	slc6a3 (ENSCCRG00000069101)	DCDC2 (ENSCCRG00000057874)	nrsn1 (ENSCCRG00000066162)	ENSCCRG00000075344	ENSCCRG00000053216	sox4b (ENSCCRG00000079285)	CDKAL1 (ENSCCRG00000069132)	ENSCCRG00000047414	ENSCCRG00000056601	ENSCCRG00000073712	ENSCCRG00000028204 #22	ENSCCRG00000059157	ENSCCRG00000037006	ENSCCRG00000056647	ENSCCRG00000027590	ENSCCRG00000002681	ENSCCRG00000043355	ENSCCRG00000011347	ENSCCRG00000061927	ddc (ENSCCRG00000016182)	ENSCCRG00000066315	entpd3 (ENSCCRG00000075484)	GASK1A (ENSCCRG00000016173)	pomgnt2 (ENSCCRG00000076592)	ENSCCRG00000069750	snrka (ENSCCRG00000014819)
Golden-line barbel	MODERN SPECIES	1801																prpf3 (ENSSGRG00000016966) #22	ice1 (ENSSGRG00000016965)	TENT4A (ENSSGRG00000016963)
Cyprininae	ANCESTRAL SPECIES	292												ENSGT01020000230359.B.a.i.b	ENSGT00940000156893.mb #17	ENSGT00940000164936.a	ENSGT00390000018360.a #20	ENSGT00390000011497.b #22	ENSGT00950000183199.b	ENSGT00940000157811.b.a	ENSGT00940000156424.a.a.a	ENSGT00940000155533.d.`b	ENSGT00940000154766.b.a	ENSGT01020000230359.B.a.i.a.a	ENSGT01020000230359.B.b.m	ENSGT01020000230359.A.y.a	ENSGT00530000063608.A	ENSGT00940000155909.o.a.e	ENSGT00940000156004.k	ENSGT01100000263542.A.a	ENSGT00420000029769.a.k	ENSGT00940000160695.a	ENSGT00940000155365.a.a.c
Goldfish	MODERN SPECIES	2081																prpf3 (ENSCARG00000049786) #22	ca14 (ENSCARG00000049769) #17	ENSCARG00000049761	ENSCARG00000049738	ENSCARG00000049731	taf2 (ENSCARG00000046344)
Cyprininae_a	ANCESTRAL SPECIES	184												ENSGT00390000000420	ENSGT01020000230359.B.a.i.b	ENSGT00940000156893.mb #17	ENSGT00390000018360.a #20	ENSGT00390000011497.b #22	ENSGT00950000183199.b	ENSGT00940000157811.b.a	ENSGT00940000156424.a.a.a	ENSGT00940000155533.d.`b	ENSGT00940000154766.b.a	ENSGT01020000230359.B.a.i.a.a	ENSGT01020000230359.B.b.m	ENSGT01020000230359.A.y.a	ENSGT00530000063608.A	ENSGT00940000155909.o.a.e	ENSGT00940000156004.k	ENSGT01100000263542.A.a	ENSGT00420000029769.a.k	ENSGT00940000160695.a	ENSGT00940000155365.a.a.c
Golden-line barbel	MODERN SPECIES	1063											taf2 (ENSSGRG00000016236)	ENSSGRG00000016227	ENSSGRG00000016226	ca14 (ENSSGRG00000016225) #17	ENSSGRG00000016222	prpf3 (ENSSGRG00000016192) #22	ice1 (ENSSGRG00000016190)	trmt44 (ENSSGRG00000016187)	rpl34 (ENSSGRG00000016185)
Common carp reference	MODERN SPECIES	47	ENSCCRG00000048451	slc6a3 (ENSCCRG00000047356)	DCDC2 (ENSCCRG00000074477)	nrsn1 (ENSCCRG00000063262)	ENSCCRG00000009226	ENSCCRG00000055302	sox4b (ENSCCRG00000064749)	CDKAL1 (ENSCCRG00000078434)	ENSCCRG00000070793	ENSCCRG00000032799	ENSCCRG00000059401	ENSCCRG00000021581	ENSCCRG00000065962	ENSCCRG00000000786 #20	ca14 (ENSCCRG00000073224) #17	prpf3 (ENSCCRG00000028229) #22	ENSCCRG00000054903	ENSCCRG00000004176	ENSCCRG00000060732	ENSCCRG00000027486	ENSCCRG00000058089	ENSCCRG00000037038	ENSCCRG00000018516	ENSCCRG00000028569	cobl (ENSCCRG00000022649)	ENSCCRG00000077123	ddc (ENSCCRG00000022014)	entpd3 (ENSCCRG00000018339)	GASK1A (ENSCCRG00000082810)	pomgnt2 (ENSCCRG00000078667)	ano10a (ENSCCRG00000069517)
Zebrafish	MODERN SPECIES	7	cep76 (ENSDARG00000058319)	id4 (ENSDARG00000045131)	ncalda (ENSDARG00000070688)	grhl2a (ENSDARG00000058342)	ENSDARG00000058351	vamp1b (ENSDARG00000097576)	psmd4b (ENSDARG00000023279)	pip5k1ab (ENSDARG00000024642)	ENSDARG00000105239 #25	COLEC10 (ENSDARG00000104752)	mal2 (ENSDARG00000077637)	enpp2 (ENSDARG00000011257)	taf2 (ENSDARG00000102307)	ca14 (ENSDARG00000061697) #17	ENSDARG00000078162	prpf3 (ENSDARG00000086425) #22	ENSDARG00000095789	ice1 (ENSDARG00000058461)	ADCY2 (ENSDARG00000058392)	DNAH5 (ENSDARG00000087373)	ENSDARG00000000370	CCR8 (ENSDARG00000086616)	ENSDARG00000105467	ENSDARG00000105363	ENSDARG00000079829	cobl (ENSDARG00000091006)	GRB10 (ENSDARG00000035308)	ddc (ENSDARG00000016494)	entpd3 (ENSDARG00000035309)	GASK1A (ENSDARG00000076862)	pomgnt2 (ENSDARG00000010941)
Euteleosteomorpha	ANCESTRAL SPECIES	4	ENSGT00950000183162.b	ENSGT00940000157357.f	ENSGT00390000005646	ENSGT00940000157507	ENSGT00940000155603.A.b.d	ENSGT00940000155603.A.a.a.a	ENSGT00950000182908.A	ENSGT00940000159154	ENSGT00390000006096.a.b	ENSGT00940000157006	ENSGT01030000234542.b.b.a.a.a.a	ENSGT01030000234542.b.b.a.a.b	ENSGT00390000002049.d ##18	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00940000177218	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000164374.A	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219
Acanthomorphata	ANCESTRAL SPECIES	9	ENSGT00950000182891.b.b.b.b.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00940000177218	ENSGT00940000154716.hc	ENSGT00940000171776	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00950000182891.b.b.b.b.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00940000177218	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a
Percomorphaceae	ANCESTRAL SPECIES		ENSGT00950000182891.b.a.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00940000177218	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a
Tiger tail seahorse	MODERN SPECIES	300							ENSHCOG00000013787	polr3c (ENSHCOG00000000823)	ITGA10 (ENSHCOG00000013872)	ENSHCOG00000013885	ENSHCOG00000013900	crabp2a (ENSHCOG00000013915)	ENSHCOG00000013921	ca14 (ENSHCOG00000014032) #17	CIART (ENSHCOG00000014049) #20	prpf3 (ENSHCOG00000014058) #22	ENSHCOG00000014067	ENSHCOG00000014082 #23	ENSHCOG00000014119	ENSHCOG00000014130	ENSHCOG00000014147	CELF3 (ENSHCOG00000000397)	CERS2 (ENSHCOG00000014180)	arnt (ENSHCOG00000014536) #34	setdb1b (ENSHCOG00000014567) #37	clk2b (ENSHCOG00000014646)	cyp11c1 (ENSHCOG00000014670)	pklr (ENSHCOG00000014717)	ENSHCOG00000014746	zbtb7b (ENSHCOG00000014760)	cyp4t8 (ENSHCOG00000015162)
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT00950000182891.b.a.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00940000177218	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT00950000182891.b.a.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00940000177218	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT00950000182891.b.b.b.b.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00940000177218	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219
Carangaria	ANCESTRAL SPECIES	1	ENSGT00950000182891.b.b.b.b.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00940000177218	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a
Carangaria_A	ANCESTRAL SPECIES	9	ENSGT00950000182891.b.b.a	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00940000177218	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00390000011379	ENSGT00400000023815	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a
Seriola	ANCESTRAL SPECIES	28	ENSGT00950000182891.b.b.b.b.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00940000177218	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00390000011379	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a
Yellowtail amberjack	MODERN SPECIES	2521	rps27.2 (ENSSLDG00000015842)	ENSSLDG00000015823	ENSSLDG00000015799	fdps (ENSSLDG00000015757)	ENSSLDG00000015729	ENSSLDG00000015713	dap3 (ENSSLDG00000015702)	GBA1 (ENSSLDG00000015679)	rnf115a (ENSSLDG00000015661)	polr3c (ENSSLDG00000015614)	ITGA10 (ENSSLDG00000015567)	crabp2a (ENSSLDG00000015550)	ENSSLDG00000015537	ca14 (ENSSLDG00000015501) #17	CIART (ENSSLDG00000015471) #20	prpf3 (ENSSLDG00000015423) #22	RPRD2 (ENSSLDG00000015396) #23	ENSSLDG00000015367	ENSSLDG00000015340	CELF3 (ENSSLDG00000015302)	CERS2 (ENSSLDG00000015279)	arnt (ENSSLDG00000015250) #34	setdb1b (ENSSLDG00000015209) #37	ENSSLDG00000015189	clk2b (ENSSLDG00000015146)	cyp11c1 (ENSSLDG00000015119)	pklr (ENSSLDG00000015078)	ENSSLDG00000015059	zbtb7b (ENSSLDG00000015043)	NDUFV1 (ENSSLDG00000015014)	khdc4 (ENSSLDG00000014999)
Greater amberjack	MODERN SPECIES	88	rps27.2 (ENSSDUG00000006257)	ENSSDUG00000006307	ENSSDUG00000006343	fdps (ENSSDUG00000006385)	ENSSDUG00000006434	ENSSDUG00000006458	dap3 (ENSSDUG00000006478)	GBA1 (ENSSDUG00000006503)	rnf115a (ENSSDUG00000006528)	polr3c (ENSSDUG00000006590)	ITGA10 (ENSSDUG00000006650)	crabp2a (ENSSDUG00000006713)	ENSSDUG00000006722	ca14 (ENSSDUG00000006746) #17	CIART (ENSSDUG00000006818) #20	prpf3 (ENSSDUG00000006840) #22	ENSSDUG00000007143	RPRD2 (ENSSDUG00000007155) #23	ENSSDUG00000007180	ENSSDUG00000007219	CELF3 (ENSSDUG00000007239)	CERS2 (ENSSDUG00000007278)	arnt (ENSSDUG00000007319) #34	setdb1b (ENSSDUG00000007513) #37	clk2b (ENSSDUG00000007545)	cyp11c1 (ENSSDUG00000007605)	pklr (ENSSDUG00000007651)	ENSSDUG00000007688	zbtb7b (ENSSDUG00000007766)	NDUFV1 (ENSSDUG00000007778)	khdc4 (ENSSDUG00000007799)
Barramundi perch	MODERN SPECIES	185	ENSLCAG00010025262	ENSLCAG00010025250	ENSLCAG00010025241	fdps (ENSLCAG00010025211)	ENSLCAG00010025182	ENSLCAG00010025169	dap3 (ENSLCAG00010025142)	GBA1 (ENSLCAG00010025081)	rnf115a (ENSLCAG00010025041)	polr3c (ENSLCAG00010025028)	ITGA10 (ENSLCAG00010024930)	crabp2a (ENSLCAG00010024874)	ENSLCAG00010024871	ca14 (ENSLCAG00010024866) #17	CIART (ENSLCAG00010024858) #20	prpf3 (ENSLCAG00010024818) #22	RPRD2 (ENSLCAG00010024785) #23	ENSLCAG00010024719	ENSLCAG00010024687	CELF3 (ENSLCAG00010024666)	CERS2 (ENSLCAG00010024661)	arnt (ENSLCAG00010024634) #34	setdb1b (ENSLCAG00010024595) #37	ENSLCAG00010024574	clk2b (ENSLCAG00010024568)	cyp11c1 (ENSLCAG00010024554)	pklr (ENSLCAG00010024465)	ENSLCAG00010024419	zbtb7b (ENSLCAG00010024415)	NDUFV1 (ENSLCAG00010024393)	khdc4 (ENSLCAG00010024376)
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00950000182891.b.b.b.b.a	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00940000177218	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00390000011379	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a
Turbot	MODERN SPECIES		ENSSMAG00000016408	ENSSMAG00000016390	ENSSMAG00000016376	ENSSMAG00000031583	ENSSMAG00000016344	fdps (ENSSMAG00000016292)	ENSSMAG00000036592	dap3 (ENSSMAG00000016184)	rnf115a (ENSSMAG00000016084)	polr3c (ENSSMAG00000016000)	ITGA10 (ENSSMAG00000015935)	ENSSMAG00000030369	ENSSMAG00000015902	ENSSMAG00000015835 #17	CIART (ENSSMAG00000015791) #20	ENSSMAG00000015739 #22	ENSSMAG00000030192	RPRD2 (ENSSMAG00000025690) #23	ENSSMAG00000015682	ENSSMAG00000015652	ENSSMAG00000015634	ENSSMAG00000015501	ENSSMAG00000015418 #34	ENSSMAG00000015398 #37	clk2b (ENSSMAG00000015365)	ENSSMAG00000014255	pklr (ENSSMAG00000014175)	ENSSMAG00000014167	ENSSMAG00000014148	ENSSMAG00000014119	ENSSMAG00000014077
Tongue sole	MODERN SPECIES	4	rps27.1 (ENSCSEG00000002346)	rab13 (ENSCSEG00000002358)	ENSCSEG00000002367	fdps (ENSCSEG00000002370)	ENSCSEG00000002373	ENSCSEG00000002383	dap3 (ENSCSEG00000002386)	GBA1 (ENSCSEG00000002392)	rnf115a (ENSCSEG00000002414)	polr3c (ENSCSEG00000002425)	ITGA10 (ENSCSEG00000002443)	crabp2a (ENSCSEG00000002466)	ENSCSEG00000002472	ca14 (ENSCSEG00000002477) #17	CIART (ENSCSEG00000002522) #20	prpf3 (ENSCSEG00000002532) #22	RPRD2 (ENSCSEG00000002555) #23	ENSCSEG00000002562	ENSCSEG00000002578	CELF3 (ENSCSEG00000002581)	CERS2 (ENSCSEG00000002591)	arnt (ENSCSEG00000002962) #34	ENSCSEG00000002976	setdb1b (ENSCSEG00000002988) #37	ENSCSEG00000003063	clk2b (ENSCSEG00000003066)	cyp11c1 (ENSCSEG00000003112)	pklr (ENSCSEG00000003394)	ENSCSEG00000003427	zbtb7b (ENSCSEG00000003439)	khdc4 (ENSCSEG00000003443)
Anabantaria	ANCESTRAL SPECIES	2	ENSGT00950000182904.a.a.a.a	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a
Zig-zag eel	MODERN SPECIES	7	ENSMAMG00000014521	ENSMAMG00000026447	rab13 (ENSMAMG00000014602)	ENSMAMG00000014620	fdps (ENSMAMG00000014658)	ENSMAMG00000014682	ENSMAMG00000014691	ENSMAMG00000014708	rnf115a (ENSMAMG00000027527)	polr3c (ENSMAMG00000014770)	ITGA10 (ENSMAMG00000014814)	crabp2a (ENSMAMG00000025387)	ENSMAMG00000014912	ENSMAMG00000014923 #17	CIART (ENSMAMG00000014954) #20	ENSMAMG00000014968 #22	RPRD2 (ENSMAMG00000015021) #23	ENSMAMG00000015032	ENSMAMG00000015054	ENSMAMG00000015079	ENSMAMG00000015125	ENSMAMG00000015157 #34	ENSMAMG00000015176 #37	clk2b (ENSMAMG00000015189)	ENSMAMG00000025575	cyp11c1 (ENSMAMG00000015245)	pklr (ENSMAMG00000019025)	ENSMAMG00000019112	ENSMAMG00000019119	ENSMAMG00000019130	ENSMAMG00000019148
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT00950000182904.a.a.a.a	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a
Climbing perch	MODERN SPECIES	7	ENSATEG00000029068	ENSATEG00000023662	ENSATEG00000029768	fdps (ENSATEG00000023652)	ENSATEG00000026620	ENSATEG00000023636	dap3 (ENSATEG00000023629)	ENSATEG00000023624	rnf115a (ENSATEG00000023621)	polr3c (ENSATEG00000023618)	ITGA10 (ENSATEG00000023613)	crabp2a (ENSATEG00000023607)	ENSATEG00000023603	ENSATEG00000023599 #17	CIART (ENSATEG00000029124) #20	ENSATEG00000023583 #22	RPRD2 (ENSATEG00000023579) #23	ENSATEG00000023568	ENSATEG00000023565	ENSATEG00000023560	ENSATEG00000023554	ENSATEG00000023530 #34	ENSATEG00000023520 #37	clk2b (ENSATEG00000023506)	ENSATEG00000023362	pklr (ENSATEG00000023326)	ENSATEG00000023315	ENSATEG00000023301	ENSATEG00000029622	ENSATEG00000022961	ENSATEG00000022951
Siamese fighting fish	MODERN SPECIES	7	ENSBSLG00000013690	rab13 (ENSBSLG00000013644)	ENSBSLG00000013617	fdps (ENSBSLG00000013271)	ENSBSLG00000024451	ENSBSLG00000024433	dap3 (ENSBSLG00000024407)	GBA1 (ENSBSLG00000024067)	rnf115a (ENSBSLG00000024055)	polr3c (ENSBSLG00000024030)	ITGA10 (ENSBSLG00000023999)	ENSBSLG00000023995	crabp2a (ENSBSLG00000023990)	ca14 (ENSBSLG00000023965) #17	CIART (ENSBSLG00000023958) #20	prpf3 (ENSBSLG00000023892) #22	RPRD2 (ENSBSLG00000023861) #23	ENSBSLG00000023026	ADAMTSL4 (ENSBSLG00000022961) #27	CELF3 (ENSBSLG00000022896)	CERS2 (ENSBSLG00000022825)	arnt (ENSBSLG00000022577) #34	setdb1b (ENSBSLG00000022420) #37	ENSBSLG00000022373	clk2b (ENSBSLG00000022331)	ENSBSLG00000022183	cyp11c1 (ENSBSLG00000021763)	pklr (ENSBSLG00000021417)	ENSBSLG00000021380	ZBTB7B (ENSBSLG00000021370)	ENSBSLG00000021238
Eupercaria	ANCESTRAL SPECIES	1	ENSGT00950000182891.b.a.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d
Tetraodontidae	ANCESTRAL SPECIES	25	ENSGT00940000159033	ENSGT00940000161554	ENSGT00390000000305	ENSGT00940000156745.b	ENSGT00940000154273.a	ENSGT00950000183106.a.b.b	ENSGT00940000157383.g.b	ENSGT00940000156657	ENSGT00940000166290	ENSGT00440000033697	ENSGT00940000157871.h.a	ENSGT00940000156612	ENSGT00940000157619.a.a	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000157011	ENSGT00940000156594	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00390000011379	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a
Fugu	DUPLICATION
Fugu	MODERN SPECIES	19	gapdh (ENSTRUG00000003708)	cnp-1 (ENSTRUG00000003628)	ncapd2 (ENSTRUG00000031017)	ing4 (ENSTRUG00000002482)	nop2 (ENSTRUG00000002011)	emg1 (ENSTRUG00000001906)	ENSTRUG00000028257	zyx (ENSTRUG00000001652)	FAM131B (ENSTRUG00000022010)	CLCN1 (ENSTRUG00000001381)	casp2 (ENSTRUG00000014714)	ENSTRUG00000014759	phc1 (ENSTRUG00000014816)	crabp2a (ENSTRUG00000031837)	ENSTRUG00000026697 #17	prpf3 (ENSTRUG00000033026) #22	ENSTRUG00000015004	gstk1 (ENSTRUG00000014778)	styk1b (ENSTRUG00000028828)	phc1 (ENSTRUG00000031572)	crabp2a (ENSTRUG00000014873)	ca14 (ENSTRUG00000014893) #17	CIART (ENSTRUG00000032482) #20	prpf3 (ENSTRUG00000014923) #22	RPRD2 (ENSTRUG00000023474) #23	ENSTRUG00000029268	ENSTRUG00000014189	CELF3 (ENSTRUG00000014225)	CERS2 (ENSTRUG00000014385)	arnt (ENSTRUG00000014504) #34	setdb1b (ENSTRUG00000014641) #37
Fugu	MODERN SPECIES	19	FAM131B (ENSTRUG00000022010)	CLCN1 (ENSTRUG00000001381)	casp2 (ENSTRUG00000014714)	ENSTRUG00000014759	phc1 (ENSTRUG00000014816)	crabp2a (ENSTRUG00000031837)	ENSTRUG00000026697 #17	prpf3 (ENSTRUG00000033026) #22	ENSTRUG00000015004	gstk1 (ENSTRUG00000014778)	styk1b (ENSTRUG00000028828)	phc1 (ENSTRUG00000031572)	crabp2a (ENSTRUG00000014873)	ca14 (ENSTRUG00000014893) #17	CIART (ENSTRUG00000032482) #20	prpf3 (ENSTRUG00000014923) #22	RPRD2 (ENSTRUG00000023474) #23	ENSTRUG00000029268	ENSTRUG00000014189	CELF3 (ENSTRUG00000014225)	CERS2 (ENSTRUG00000014385)	arnt (ENSTRUG00000014504) #34	setdb1b (ENSTRUG00000014641) #37	ENSTRUG00000026274	cyp11c1 (ENSTRUG00000014845)	pklr (ENSTRUG00000014910)	zbtb7b (ENSTRUG00000031262)	NDUFV1 (ENSTRUG00000032214)	ENSTRUG00000015115	ENSTRUG00000029166	ENSTRUG00000029074
Tetraodon	MODERN SPECIES	23	ncapd2 (ENSTNIG00000008044)	ing4 (ENSTNIG00000008045)	nop2 (ENSTNIG00000008046)	emg1 (ENSTNIG00000008047)	zyx (ENSTNIG00000008048)	ENSTNIG00000008049	CLCN1 (ENSTNIG00000008050)	casp2 (ENSTNIG00000008051)	ENSTNIG00000008052	gstk1 (ENSTNIG00000001719)	styk1b (ENSTNIG00000008053)	ENSTNIG00000008054	crabp2a (ENSTNIG00000008055)	ca14 (ENSTNIG00000008056) #17	ENSTNIG00000008057	prpf3 (ENSTNIG00000008058) #22	ENSTNIG00000008059 #23	ENSTNIG00000008060	ENSTNIG00000008061	CELF3 (ENSTNIG00000008062)	CERS2 (ENSTNIG00000008063)	arnt (ENSTNIG00000008064) #34	setdb1b (ENSTNIG00000008065) #37	ENSTNIG00000008066	clk2b (ENSTNIG00000008067)	cyp11c1 (ENSTNIG00000008068)	pklr (ENSTNIG00000008069)	ENSTNIG00000008070	zbtb7b (ENSTNIG00000008071)	khdc4 (ENSTNIG00000008072)	ENSTNIG00000008073
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT00950000182891.b.a.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d
Ballan wrasse	MODERN SPECIES	97	KCNN3 (ENSLBEG00000000309)	ENSLBEG00000000272	rab13 (ENSLBEG00000026779)	ENSLBEG00000026739	fdps (ENSLBEG00000026711)	ENSLBEG00000026666	dap3 (ENSLBEG00000026641)	GBA1 (ENSLBEG00000026624)	rnf115a (ENSLBEG00000026606)	polr3c (ENSLBEG00000026567)	ITGA10 (ENSLBEG00000026514)	crabp2a (ENSLBEG00000026486)	ENSLBEG00000026474	ca14 (ENSLBEG00000026406) #17	CIART (ENSLBEG00000026371) #20	prpf3 (ENSLBEG00000026310) #22	RPRD2 (ENSLBEG00000026261) #23	ENSLBEG00000026238	ENSLBEG00000026210	CELF3 (ENSLBEG00000026140)	CERS2 (ENSLBEG00000026082)	arnt (ENSLBEG00000026037) #34	setdb1b (ENSLBEG00000025862) #37	ENSLBEG00000025807	clk2b (ENSLBEG00000025773)	cyp11c1 (ENSLBEG00000025730)	pklr (ENSLBEG00000025690)	ENSLBEG00000025667	zbtb7b (ENSLBEG00000025578)	NDUFV1 (ENSLBEG00000025548)	khdc4 (ENSLBEG00000025524)
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00950000182891.b.a.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d
Perciformes	ANCESTRAL SPECIES	3	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.a.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.a.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b
Pike perch	MODERN SPECIES	15	KCNN3 (ENSSLUG00000012668)	ENSSLUG00000012690	rab13 (ENSSLUG00000012708)	ENSSLUG00000012718	fdps (ENSSLUG00000005158)	ENSSLUG00000005273	ENSSLUG00000005291	dap3 (ENSSLUG00000005359)	GBA1 (ENSSLUG00000005653)	rnf115a (ENSSLUG00000005724)	polr3c (ENSSLUG00000005739)	ITGA10 (ENSSLUG00000005771)	crabp2a (ENSSLUG00000005867)	ca14 (ENSSLUG00000005873) #17	ENSSLUG00000005895 #20	prpf3 (ENSSLUG00000005921) #22	ENSSLUG00000005975	ENSSLUG00000006094	ENSSLUG00000008552	CELF3 (ENSSLUG00000008730)	CERS2 (ENSSLUG00000008735)	ENSSLUG00000008743	arnt (ENSSLUG00000008830) #34	setdb1b (ENSSLUG00000010791) #37	clk2b (ENSSLUG00000011632)	cyp11c1 (ENSSLUG00000012330)	pklr (ENSSLUG00000012509)	ENSSLUG00000014327	zbtb7b (ENSSLUG00000014404)	NDUFV1 (ENSSLUG00000014418)	khdc4 (ENSSLUG00000014601)
Channel bull blenny	MODERN SPECIES	7	ENSCGOG00000007138	ENSCGOG00000007084	ENSCGOG00000006992	ENSCGOG00000006947	fdps (ENSCGOG00000006560)	ENSCGOG00000006551	ENSCGOG00000006549	dap3 (ENSCGOG00000006143)	GBA1 (ENSCGOG00000005999)	rnf115a (ENSCGOG00000005990)	polr3c (ENSCGOG00000005762)	ITGA10 (ENSCGOG00000005744)	crabp2a (ENSCGOG00000005736)	ca14 (ENSCGOG00000005720) #17	CIART (ENSCGOG00000005717) #20	prpf3 (ENSCGOG00000005098) #22	ENSCGOG00000005088 #23	ENSCGOG00000005086 #23	ENSCGOG00000004683	ENSCGOG00000004667	CELF3 (ENSCGOG00000003981)	CERS2 (ENSCGOG00000003927)	arnt (ENSCGOG00000002983) #34	setdb1b (ENSCGOG00000002878) #37	clk2b (ENSCGOG00000002513)	cyp11c1 (ENSCGOG00000002436)	pklr (ENSCGOG00000002409)	ENSCGOG00000002358	zbtb7b (ENSCGOG00000002355)	NDUFV1 (ENSCGOG00000001787)	khdc4 (ENSCGOG00000001720)
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.a.b	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000156893 #17	ENSGT00940000164936.a	ENSGT00390000011497 #22	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d
Lumpfish	MODERN SPECIES	7	KCNN3 (ENSCLMG00005002023)	ENSCLMG00005002025	rab13 (ENSCLMG00005002029)	ENSCLMG00005002032	fdps (ENSCLMG00005002034)	ENSCLMG00005002063	ENSCLMG00005002067	dap3 (ENSCLMG00005002077)	GBA1 (ENSCLMG00005002138)	rnf115a (ENSCLMG00005002402)	polr3c (ENSCLMG00005002406)	ITGA10 (ENSCLMG00005002630)	crabp2a (ENSCLMG00005002635)	ca14 (ENSCLMG00005002637) #17	ENSCLMG00005002641	prpf3 (ENSCLMG00005002646) #22	ENSCLMG00005002666 #23	ENSCLMG00005002688	ENSCLMG00005008803	CELF3 (ENSCLMG00005008804)	CERS2 (ENSCLMG00005008805)	arnt (ENSCLMG00005008812) #34	setdb1b (ENSCLMG00005010098) #37	clk2b (ENSCLMG00005010167)	cyp11c1 (ENSCLMG00005010177)	pklr (ENSCLMG00005010199)	ENSCLMG00005010269	zbtb7b (ENSCLMG00005010275)	NDUFV1 (ENSCLMG00005010282)	khdc4 (ENSCLMG00005010289)	ENSCLMG00005010350
Stickleback	MODERN SPECIES	19	ENSGACG00000011957	adar (ENSGACG00000011951)	KCNN3 (ENSGACG00000011942)	ENSGACG00000011934	rab13 (ENSGACG00000011925)	ENSGACG00000011917	fdps (ENSGACG00000011874)	ENSGACG00000011873	dap3 (ENSGACG00000011859)	GBA1 (ENSGACG00000011848)	rnf115a (ENSGACG00000011841)	polr3c (ENSGACG00000011829)	ITGA10 (ENSGACG00000011820)	crabp2a (ENSGACG00000011813)	ca14 (ENSGACG00000011803) #17	prpf3 (ENSGACG00000011792) #22	ENSGACG00000011789 #23	ENSGACG00000011734	ENSGACG00000011722	CELF3 (ENSGACG00000011707)	CERS2 (ENSGACG00000011695)	arnt (ENSGACG00000011686) #34	setdb1b (ENSGACG00000011675) #37	ENSGACG00000011670	clk2b (ENSGACG00000011669)	ENSGACG00000011666	cyp11c1 (ENSGACG00000011657)	pklr (ENSGACG00000011641)	ENSGACG00000011639	zbtb7b (ENSGACG00000011635)	khdc4 (ENSGACG00000011621)
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00950000182891.b.a.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d
Gilthead seabream	MODERN SPECIES	8	ENSSAUG00010015641	ENSSAUG00010015651	rab13 (ENSSAUG00010015654)	ENSSAUG00010015657	fdps (ENSSAUG00010015664)	ENSSAUG00010015770	ENSSAUG00010015774	GBA1 (ENSSAUG00010015806)	rnf115a (ENSSAUG00010016057)	polr3c (ENSSAUG00010016062)	ITGA10 (ENSSAUG00010016335)	crabp2a (ENSSAUG00010016437)	ENSSAUG00010016443	ca14 (ENSSAUG00010016450) #17	ENSSAUG00010016459 #20	prpf3 (ENSSAUG00010016468) #22	RPRD2 (ENSSAUG00010016655) #23	ENSSAUG00010016669	ENSSAUG00010017149 #34	setdb1b (ENSSAUG00010017197) #37	ENSSAUG00010017900	clk2b (ENSSAUG00010017904)	cyp11c1 (ENSSAUG00010017931)	pklr (ENSSAUG00010018486)	ENSSAUG00010018921	zbtb7b (ENSSAUG00010018923)	NDUFV1 (ENSSAUG00010018928)	khdc4 (ENSSAUG00010019036)	ENSSAUG00010019041	ENSSAUG00010019044	ENSSAUG00010019064
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00950000182891.b.a.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d
European seabass	MODERN SPECIES	6	ENSDLAG00005011602	ENSDLAG00005014946	ENSDLAG00005028206	ENSDLAG00005011531	fdps (ENSDLAG00005011432)	ENSDLAG00005011406	ENSDLAG00005011394	dap3 (ENSDLAG00005011245)	ENSDLAG00005011233	rnf115a (ENSDLAG00005011219)	polr3c (ENSDLAG00005011069)	ITGA10 (ENSDLAG00005009841)	crabp2a (ENSDLAG00005009798)	ENSDLAG00005009781 #17	CIART (ENSDLAG00005009769) #20	ENSDLAG00005009487 #22	RPRD2 (ENSDLAG00005033013) #23	ENSDLAG00005007823	ENSDLAG00005007638	ENSDLAG00005007549	ENSDLAG00005007305 #34	ENSDLAG00005006849 #37	ENSDLAG00005033042	clk2b (ENSDLAG00005006824)	ENSDLAG00005006550	pklr (ENSDLAG00005005628)	ENSDLAG00005029138	ENSDLAG00005026831	ENSDLAG00005004491	ENSDLAG00005004359	ENSDLAG00005029454
Large yellow croaker	MODERN SPECIES	484	ENSLCRG00005008821	ENSLCRG00005008818	ENSLCRG00005008813	ENSLCRG00005008811	fdps (ENSLCRG00005008808)	ENSLCRG00005008803	dap3 (ENSLCRG00005008373)	GBA1 (ENSLCRG00005008261)	rnf115a (ENSLCRG00005008231)	polr3c (ENSLCRG00005008200)	ITGA10 (ENSLCRG00005008129)	crabp2a (ENSLCRG00005008118)	ENSLCRG00005008115	ca14 (ENSLCRG00005008112) #17	ENSLCRG00005008109	prpf3 (ENSLCRG00005008101) #22	ENSLCRG00005008092 #23	ENSLCRG00005006911	ENSLCRG00005006884	CELF3 (ENSLCRG00005006865)	CERS2 (ENSLCRG00005006848)	arnt (ENSLCRG00005006183) #34	setdb1b (ENSLCRG00005005494) #37	cyp11c1 (ENSLCRG00005005457)	pklr (ENSLCRG00005005411)	ENSLCRG00005005399	zbtb7b (ENSLCRG00005005396)	NDUFV1 (ENSLCRG00005005054)	khdc4 (ENSLCRG00005005048)	ENSLCRG00005005047	ENSLCRG00005005046
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT00950000182891.b.a.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00940000177218	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219
Atherinomorphae	ANCESTRAL SPECIES		ENSGT00950000182891.b.b.b.b.a	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00940000177218	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT00940000159989	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00940000177218	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a
Aplocheiloidei	ANCESTRAL SPECIES	2	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d
Turquoise killifish	MODERN SPECIES	442															C1ORF51 (ENSNFUG00015010977) #20	PRPF3 (ENSNFUG00015010955) #22	ENSNFUG00015010951
Mangrove rivulus	MODERN SPECIES	81	ENSKMAG00000001970	rab13 (ENSKMAG00000001908)	ENSKMAG00000001878	fdps (ENSKMAG00000001823)	ENSKMAG00000001771	ENSKMAG00000001749	dap3 (ENSKMAG00000001741)	GBA1 (ENSKMAG00000001722)	rnf115a (ENSKMAG00000001643)	polr3c (ENSKMAG00000001574)	ITGA10 (ENSKMAG00000001549)	crabp2a (ENSKMAG00000001532)	ENSKMAG00000001521	ca14 (ENSKMAG00000001496) #17	ENSKMAG00000001480 #20	prpf3 (ENSKMAG00000001390) #22	RPRD2 (ENSKMAG00000001366) #23	ENSKMAG00000001354	ENSKMAG00000001330 #27	CELF3 (ENSKMAG00000001269)	CERS2 (ENSKMAG00000001244)	arnt (ENSKMAG00000001221) #34	setdb1b (ENSKMAG00000001197) #37	ENSKMAG00000001130
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00940000177218	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a
Poeciliinae	ANCESTRAL SPECIES		ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00940000177218	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a
Poecilia	ANCESTRAL SPECIES		ENSGT00950000182904.a.a.a.a	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00940000177218	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a
NAME_6	ANCESTRAL SPECIES	36	ENSGT00950000182904.a.a.a.a.g	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f.g
Sailfin molly	MODERN SPECIES	732												crabp2a (ENSPLAG00000018022)	ENSPLAG00000018029	ca14 (ENSPLAG00000018041) #17	CIART (ENSPLAG00000018049) #20	prpf3 (ENSPLAG00000018103) #22	RPRD2 (ENSPLAG00000018111) #23	ENSPLAG00000018145	ENSPLAG00000018157	CELF3 (ENSPLAG00000018202)	CERS2 (ENSPLAG00000018229)
Amazon molly	MODERN SPECIES	328	ENSPFOG00000014418	ENSPFOG00000014386	fdps (ENSPFOG00000014325)	ENSPFOG00000024756	ENSPFOG00000022464	ENSPFOG00000024568	dap3 (ENSPFOG00000014273)	GBA1 (ENSPFOG00000014161)	rnf115a (ENSPFOG00000014156)	polr3c (ENSPFOG00000014106)	ITGA10 (ENSPFOG00000013856)	crabp2a (ENSPFOG00000013813)	ENSPFOG00000020915	ca14 (ENSPFOG00000013735) #17	CIART (ENSPFOG00000013718) #20	prpf3 (ENSPFOG00000013638) #22	ENSPFOG00000013631 #23	ENSPFOG00000013444	ENSPFOG00000013385	CELF3 (ENSPFOG00000013307)	CERS2 (ENSPFOG00000013108)
Guppy	MODERN SPECIES	446	ENSPREG00000016409	atp6v1c1a (ENSPREG00000016458)	AZIN1 (ENSPREG00000016481)	ENSPREG00000016506	ubr5 (ENSPREG00000016584)	ENSPREG00000016898	ENSPREG00000016922	MATN2 (ENSPREG00000016949)	rnf115a (ENSPREG00000017007)	polr3c (ENSPREG00000017050)	ITGA10 (ENSPREG00000017097)	crabp2a (ENSPREG00000017134)	ENSPREG00000017155	ca14 (ENSPREG00000017170) #17	ENSPREG00000017198 #20	prpf3 (ENSPREG00000017216) #22	ENSPREG00000017263	RPRD2 (ENSPREG00000017269) #23	ENSPREG00000017293	ENSPREG00000017312	ENSPREG00000017342 #27	CELF3 (ENSPREG00000017378)	CERS2 (ENSPREG00000017409)	arnt (ENSPREG00000017435) #34	setdb1b (ENSPREG00000017459) #37	clk2b (ENSPREG00000017497)	ENSPREG00000017511	cyb5r4 (ENSPREG00000017539)	ENSPREG00000017560	sim1a (ENSPREG00000017582)	ASCC3 (ENSPREG00000017616)
Platyfish	MODERN SPECIES	17	ENSXMAG00000016094	ENSXMAG00000016123	fdps (ENSXMAG00000016139)	ENSXMAG00000021842	ENSXMAG00000027540	dap3 (ENSXMAG00000016165)	GBA1 (ENSXMAG00000016183)	rnf115a (ENSXMAG00000021206)	polr3c (ENSXMAG00000016215)	ITGA10 (ENSXMAG00000016260)	crabp2a (ENSXMAG00000016304)	ENSXMAG00000019942	ca14 (ENSXMAG00000016324) #17	ENSXMAG00000026817 #20	ENSXMAG00000029619	prpf3 (ENSXMAG00000016347) #22	RPRD2 (ENSXMAG00000016368) #23	ENSXMAG00000016382	ENSXMAG00000016454	CELF3 (ENSXMAG00000016475)	CERS2 (ENSXMAG00000016508)	arnt (ENSXMAG00000016545) #34	setdb1b (ENSXMAG00000016600) #37	ENSXMAG00000022818	clk2b (ENSXMAG00000016620)	cyp11c1 (ENSXMAG00000016675)	pklr (ENSXMAG00000016700)	ENSXMAG00000021968	zbtb7b (ENSXMAG00000012652)	NDUFV1 (ENSXMAG00000012641)	khdc4 (ENSXMAG00000012623)
NAME_4	ANCESTRAL SPECIES	1	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074.x	ENSGT00900000141074.w	ENSGT00900000141033.b.b	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00940000169692
Mummichog	MODERN SPECIES	2225	rab13 (ENSFHEG00000021221)	ENSFHEG00000000524	fdps (ENSFHEG00000021296)	fdps (ENSFHEG00000021384)	ENSFHEG00000021401	ENSFHEG00000021416	dap3 (ENSFHEG00000021426)	GBA1 (ENSFHEG00000021460)	rnf115a (ENSFHEG00000021540)	polr3c (ENSFHEG00000000872)	ITGA10 (ENSFHEG00000021641)	crabp2a (ENSFHEG00000021658)	ENSFHEG00000021670	ca14 (ENSFHEG00000021685) #17	CIART (ENSFHEG00000021699) #20	prpf3 (ENSFHEG00000021746) #22	RPRD2 (ENSFHEG00000021755) #23	ENSFHEG00000021877	ENSFHEG00000021887 #27	CELF3 (ENSFHEG00000021947)	CERS2 (ENSFHEG00000021996)	arnt (ENSFHEG00000022149) #34	setdb1b (ENSFHEG00000022195) #37	clk2b (ENSFHEG00000022294)	cyp11c1 (ENSFHEG00000022306)	pklr (ENSFHEG00000022367)	ENSFHEG00000022413	zbtb7b (ENSFHEG00000022426)	NDUFV1 (ENSFHEG00000022456)	khdc4 (ENSFHEG00000022540)	ENSFHEG00000022558
Sheepshead minnow	MODERN SPECIES	341										polr3c (ENSCVAG00000009443)	ENSCVAG00000009395	crabp2a (ENSCVAG00000009372)	ENSCVAG00000009358	ca14 (ENSCVAG00000009348) #17	CIART (ENSCVAG00000009325) #20	prpf3 (ENSCVAG00000009318) #22	RPRD2 (ENSCVAG00000009274) #23	ENSCVAG00000009269	ENSCVAG00000009253	ENSCVAG00000009194	CELF3 (ENSCVAG00000009184)	CERS2 (ENSCVAG00000009101)	arnt (ENSCVAG00000008992) #34	setdb1b (ENSCVAG00000008877) #37	clk2b (ENSCVAG00000000248)	ENSCVAG00000008807	cyp11c1 (ENSCVAG00000008800)	pklr (ENSCVAG00000008759)	ENSCVAG00000008694	zbtb7b (ENSCVAG00000008597)	NDUFV1 (ENSCVAG00000008586)
Oryzias	ANCESTRAL SPECIES	2	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT01090000260242	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00940000177218	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT00940000159989	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT01090000260242	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00940000177218	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d
Indian medaka	MODERN SPECIES	5	ENSOMEG00000008258	fdps (ENSOMEG00000008297)	ENSOMEG00000008381	ENSOMEG00000008402	dap3 (ENSOMEG00000008436)	GBA1 (ENSOMEG00000008476)	rnf115a (ENSOMEG00000008504)	polr3c (ENSOMEG00000008558)	ITGA10 (ENSOMEG00000008660)	crabp2a (ENSOMEG00000008684)	ENSOMEG00000008697	ENSOMEG00000008710	ENSOMEG00000008727	ca14 (ENSOMEG00000008792) #17	CIART (ENSOMEG00000008836) #20	prpf3 (ENSOMEG00000000940) #22	ENSOMEG00000008935	ENSOMEG00000008953 #23	ENSOMEG00000009022	ENSOMEG00000009061	CELF3 (ENSOMEG00000009131)	CERS2 (ENSOMEG00000009154)	arnt (ENSOMEG00000009257) #34	setdb1b (ENSOMEG00000009457) #37	clk2b (ENSOMEG00000009526)	ENSOMEG00000009548	cyp11c1 (ENSOMEG00000009612)	pklr (ENSOMEG00000009673)	ENSOMEG00000009753	zbtb7b (ENSOMEG00000009771)	khdc4 (ENSOMEG00000009796)
Javanese ricefish	MODERN SPECIES	7	KCNN3 (ENSOJAG00000018584)	ENSOJAG00000018750	ENSOJAG00000018768	ENSOJAG00000018789	fdps (ENSOJAG00000018806)	ENSOJAG00000018878	ENSOJAG00000018892	dap3 (ENSOJAG00000018913)	GBA1 (ENSOJAG00000019129)	rnf115a (ENSOJAG00000019441)	polr3c (ENSOJAG00000019474)	ITGA10 (ENSOJAG00000019505)	crabp2a (ENSOJAG00000019646)	ENSOJAG00000019652	ca14 (ENSOJAG00000019663) #17	prpf3 (ENSOJAG00000019697) #22	ENSOJAG00000019793	ENSOJAG00000019800 #23	ENSOJAG00000019837	ENSOJAG00000019873	CELF3 (ENSOJAG00000020014)	CERS2 (ENSOJAG00000020190)	arnt (ENSOJAG00000020250) #34	setdb1b (ENSOJAG00000020866) #37	ENSOJAG00000001960	si:ch211-81a5.8 (ENSOJAG00000002047)	cyp11c1 (ENSOJAG00000002143)	pklr (ENSOJAG00000002772)	ENSOJAG00000004375	zbtb7b (ENSOJAG00000004458)	khdc4 (ENSOJAG00000004481)
Oryzias_a	ANCESTRAL SPECIES	9	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT01090000260242	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808
Japanese Medaka HdrR	MODERN SPECIES	7	ENSORLG00000009985	ENSORLG00000025395	ENSORLG00000010008	fdps (ENSORLG00000010041)	ENSORLG00000028077	ENSORLG00000022122	dap3 (ENSORLG00000010053)	gba (ENSORLG00000010079)	rnf115a (ENSORLG00000010107)	polr3c (ENSORLG00000010133)	ITGA10 (ENSORLG00000010249)	crabp2a (ENSORLG00000010277)	ENSORLG00000024479	ca14 (ENSORLG00000010291) #17	CIART (ENSORLG00000010295) #20	prpf3 (ENSORLG00000010330) #22	RPRD2 (ENSORLG00000010343) #23	ENSORLG00000010391	ENSORLG00000010424	CELF3 (ENSORLG00000010447)	CERS2 (ENSORLG00000010512)	arnt (ENSORLG00000010551) #34	setdb1b (ENSORLG00000010602) #37	ENSORLG00000022513	clk2b (ENSORLG00000010615)	cyp11b (ENSORLG00000010480)	pklr (ENSORLG00000010652)	ENSORLG00000010670	zbtb7b (ENSORLG00000010678)	khdc4 (ENSORLG00000010686)	ENSORLG00000010691
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT00950000182891.b.b.b.b.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00940000177218	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a
Cichlidae	ANCESTRAL SPECIES	9	ENSGT00950000182891.b.b.b.b.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00940000177218	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT00940000165886.b	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00950000182891.b.b.b.b.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT00940000165886.b	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00950000182891.b.b.b.b.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000154947.l	ENSGT00940000165886.b	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d
Haplochromini	ANCESTRAL SPECIES	6	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.b.b.b.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000154947.l	ENSGT00940000165886.b	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d
Burton s mouthbrooder	MODERN SPECIES	466	KCNN3 (ENSHBUG00000003795)	rps27.2 (ENSHBUG00000003753)	ENSHBUG00000003728	ENSHBUG00000003704	fdps (ENSHBUG00000003690)	ENSHBUG00000003677	ENSHBUG00000003667	dap3 (ENSHBUG00000003658)	GBA1 (ENSHBUG00000003642)	rnf115a (ENSHBUG00000003634)	polr3c (ENSHBUG00000003619)	ITGA10 (ENSHBUG00000003585)	crabp2a (ENSHBUG00000003556)	ca14 (ENSHBUG00000003531) #17	CIART (ENSHBUG00000003503) #20	prpf3 (ENSHBUG00000003493) #22	RPRD2 (ENSHBUG00000003420) #23	ENSHBUG00000003411	ENSHBUG00000003381	CELF3 (ENSHBUG00000003367)
Haplochromini_A	ANCESTRAL SPECIES	18	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.b.b.b.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000154947.l	ENSGT00940000165886.b	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d
P. nyererei	MODERN SPECIES	340	KCNN3 (ENSPNYG00000004786)	rps27.2 (ENSPNYG00000004718)	ENSPNYG00000004681	ENSPNYG00000004630	fdps (ENSPNYG00000004603)	ENSPNYG00000004585	ENSPNYG00000004578	dap3 (ENSPNYG00000004551)	GBA1 (ENSPNYG00000004543)	rnf115a (ENSPNYG00000004530)	polr3c (ENSPNYG00000004504)	ITGA10 (ENSPNYG00000004429)	crabp2a (ENSPNYG00000004411)	ca14 (ENSPNYG00000004389) #17	CIART (ENSPNYG00000004366) #20	prpf3 (ENSPNYG00000004279) #22	RPRD2 (ENSPNYG00000004252) #23	ENSPNYG00000004232	ENSPNYG00000004203	CELF3 (ENSPNYG00000004167)	CERS2 (ENSPNYG00000004111)	arnt (ENSPNYG00000004092) #34	setdb1b (ENSPNYG00000003997) #37	clk2b (ENSPNYG00000003959)	rbp5 (ENSPNYG00000003932)	cyp11c1 (ENSPNYG00000003279)	pklr (ENSPNYG00000003190)	ENSPNYG00000003061	zbtb7b (ENSPNYG00000003031)	NDUFV1 (ENSPNYG00000002771)	khdc4 (ENSPNYG00000002718)
Haplochromini_B	ANCESTRAL SPECIES	6	ENSGT00950000182904.a.a.a.a	ENSGT00950000182891.b.b.b.b.b	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a.b	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000154947.l	ENSGT00940000165886.b	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d
Eastern happy	MODERN SPECIES	2	rps27.2 (ENSACLG00000019602)	ENSACLG00000019643	ENSACLG00000019658	ENSACLG00000019675	fdps (ENSACLG00000019710)	ENSACLG00000019774	ENSACLG00000019798	dap3 (ENSACLG00000019804)	GBA1 (ENSACLG00000019877)	rnf115a (ENSACLG00000019901)	polr3c (ENSACLG00000019970)	ITGA10 (ENSACLG00000020004)	crabp2a (ENSACLG00000020063)	ca14 (ENSACLG00000020088) #17	CIART (ENSACLG00000020117) #20	prpf3 (ENSACLG00000020127) #22	RPRD2 (ENSACLG00000020253) #23	ENSACLG00000020262	ENSACLG00000020296	CELF3 (ENSACLG00000020342)	CERS2 (ENSACLG00000020370)	arnt (ENSACLG00000020427) #34	setdb1b (ENSACLG00000020489) #37	clk2b (ENSACLG00000020529)	rbp5 (ENSACLG00000020557)	ENSACLG00000020569	cyp11c1 (ENSACLG00000020574)	pklr (ENSACLG00000020605)	ENSACLG00000020658	zbtb7b (ENSACLG00000020686)	NDUFV1 (ENSACLG00000020692)
Zebra mbuna	MODERN SPECIES	1093	KCNN3 (ENSMZEG00005015793)	rps27.2 (ENSMZEG00005015801)	ENSMZEG00005015817	ENSMZEG00005015829	fdps (ENSMZEG00005015843)	ENSMZEG00005015850	ENSMZEG00005015860	dap3 (ENSMZEG00005015864)	GBA1 (ENSMZEG00005015871)	rnf115a (ENSMZEG00005015878)	polr3c (ENSMZEG00005015882)	ITGA10 (ENSMZEG00005015917)	crabp2a (ENSMZEG00005015933)	ca14 (ENSMZEG00005015942) #17	CIART (ENSMZEG00005015953) #20	prpf3 (ENSMZEG00005015970) #22	RPRD2 (ENSMZEG00005015983) #23	ENSMZEG00005015989	ENSMZEG00005015998	CELF3 (ENSMZEG00005016013)	CERS2 (ENSMZEG00005016071)	arnt (ENSMZEG00005016081) #34	setdb1b (ENSMZEG00005016099) #37	clk2b (ENSMZEG00005016119)	rbp5 (ENSMZEG00005016127)	cyp11c1 (ENSMZEG00005016136)	pklr (ENSMZEG00005016142)	ENSMZEG00005016161	zbtb7b (ENSMZEG00005016168)	NDUFV1 (ENSMZEG00005016175)	khdc4 (ENSMZEG00005016190)
Lyretail cichlid	MODERN SPECIES	421	KCNN3 (ENSNBRG00000004458)	rps27.2 (ENSNBRG00000004408)	rab13 (ENSNBRG00000004124)	ENSNBRG00000004012	fdps (ENSNBRG00000003942)	ENSNBRG00000003898	dap3 (ENSNBRG00000003880)	GBA1 (ENSNBRG00000003782)	rnf115a (ENSNBRG00000003743)	polr3c (ENSNBRG00000003707)	ITGA10 (ENSNBRG00000003630)	crabp2a (ENSNBRG00000003596)	ENSNBRG00000003588	ca14 (ENSNBRG00000003555) #17	ENSNBRG00000003513	prpf3 (ENSNBRG00000003462) #22	ENSNBRG00000003446 #23	ENSNBRG00000003429	ENSNBRG00000003412	CELF3 (ENSNBRG00000003364)	CERS2 (ENSNBRG00000003338)	arnt (ENSNBRG00000003317) #34	setdb1b (ENSNBRG00000003147) #37	clk2b (ENSNBRG00000003097)	rbp5 (ENSNBRG00000003077)	cyp11c1 (ENSNBRG00000003044)	pklr (ENSNBRG00000003002)	ENSNBRG00000002950	zbtb7b (ENSNBRG00000002939)	NDUFV1 (ENSNBRG00000002909)	khdc4 (ENSNBRG00000002786)
Nile tilapia	MODERN SPECIES	2	KCNN3 (ENSONIG00000006336)	ENSONIG00000032846	ENSONIG00000039850	ENSONIG00000006343	fdps (ENSONIG00000006344)	ENSONIG00000028896	ENSONIG00000006351	dap3 (ENSONIG00000006354)	GBA1 (ENSONIG00000006359)	rnf115 (ENSONIG00000042941)	polr3c (ENSONIG00000006370)	ITGA10 (ENSONIG00000006374)	crabp2a (ENSONIG00000006388)	ca14 (ENSONIG00000006390) #17	CIART (ENSONIG00000032306) #20	prpf3 (ENSONIG00000006394) #22	RPRD2 (ENSONIG00000006400) #23	ENSONIG00000006402	ENSONIG00000006410 #27	CELF3 (ENSONIG00000006421)	CERS2 (ENSONIG00000006425)	arnt (ENSONIG00000006431) #34	setdb1b (ENSONIG00000006454) #37	ENSONIG00000035023	clk2b (ENSONIG00000006457)	rbp5 (ENSONIG00000031419)	cyp11c1 (ENSONIG00000006462)	pklr (ENSONIG00000006474)	ENSONIG00000006481	zbtb7b (ENSONIG00000028677)	NDUFV1 (ENSONIG00000006484)
Midas cichlid	MODERN SPECIES	791	KCNN3 (ENSACIG00000008628)	ENSACIG00000008615	rab13 (ENSACIG00000008584)	ENSACIG00000008516	ENSACIG00000008477	ENSACIG00000008471	dap3 (ENSACIG00000008298)	GBA1 (ENSACIG00000008199)	rnf115a (ENSACIG00000008100)	polr3c (ENSACIG00000008064)	ITGA10 (ENSACIG00000008000)	crabp2a (ENSACIG00000007975)	ENSACIG00000007970	ca14 (ENSACIG00000007927) #17	ENSACIG00000007911	prpf3 (ENSACIG00000007876) #22	ENSACIG00000007864	ENSACIG00000007828 #23	ENSACIG00000007759	ENSACIG00000007730	CELF3 (ENSACIG00000007698)	CERS2 (ENSACIG00000007675)	arnt (ENSACIG00000007549) #34	setdb1b (ENSACIG00000007359) #37	clk2b (ENSACIG00000007329)	rbp5 (ENSACIG00000007317)	cyp11c1 (ENSACIG00000007289)	pklr (ENSACIG00000007258)	ENSACIG00000007213	zbtb7b (ENSACIG00000007192)	NDUFV1 (ENSACIG00000007163)
Pomacentridae	ANCESTRAL SPECIES	239															ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00940000177218	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27
Pomacentridae_A	ANCESTRAL SPECIES	261															ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00940000177218	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27
Amphiprion	ANCESTRAL SPECIES	314															ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27
Clown anemonefish	MODERN SPECIES	2579															CIART (ENSAOCG00000011478) #20	prpf3 (ENSAOCG00000011449) #22	RPRD2 (ENSAOCG00000011391) #23
Spiny chromis	MODERN SPECIES	717								ENSAPOG00000015297	CYTH2 (ENSAPOG00000015356)	ENSAPOG00000015365	zgc:158689 (ENSAPOG00000015428)	ndufa3 (ENSAPOG00000015443)	tfpt (ENSAPOG00000015451)	cnot3a (ENSAPOG00000015499)	CIART (ENSAPOG00000015510) #20	prpf3 (ENSAPOG00000015584) #22	ENSAPOG00000015590	RPRD2 (ENSAPOG00000015642) #23	ENSAPOG00000015706	CELF3 (ENSAPOG00000000910)	ENSAPOG00000015794
Bicolor damselfish	MODERN SPECIES	1058									vamp1b (ENSSPAG00000018341)	mrpl51 (ENSSPAG00000018354)	ENSSPAG00000018397	tnfrsf1a (ENSSPAG00000018425)	IFFO1 (ENSSPAG00000018520)	opn9 (ENSSPAG00000018652)	CIART (ENSSPAG00000018709) #20	prpf3 (ENSSPAG00000018721) #22	ENSSPAG00000018809	ENSSPAG00000018825 #23	ENSSPAG00000018887	ENSSPAG00000018934	CELF3 (ENSSPAG00000019028)	CERS2 (ENSSPAG00000019084)	arnt (ENSSPAG00000019126) #34
Pinecone sodierfish	MODERN SPECIES	7	rps27.2 (ENSMMDG00005016636)	rab13 (ENSMMDG00005016644)	ENSMMDG00005016649	fdps (ENSMMDG00005016653)	ENSMMDG00005016658	ENSMMDG00005016662	dap3 (ENSMMDG00005016665)	GBA1 (ENSMMDG00005016674)	rnf115a (ENSMMDG00005016848)	polr3c (ENSMMDG00005001235)	ITGA10 (ENSMMDG00005001325)	crabp2a (ENSMMDG00005001337)	ENSMMDG00005001343	ca14 (ENSMMDG00005001354) #17	CIART (ENSMMDG00005001358) #20	prpf3 (ENSMMDG00005001387) #22	RPRD2 (ENSMMDG00005001477) #23	ENSMMDG00005001699	ENSMMDG00005006773	CELF3 (ENSMMDG00005006781)	CERS2 (ENSMMDG00005006785)	arnt (ENSMMDG00005006813) #34	setdb1b (ENSMMDG00005006874) #37	ENSMMDG00005007077	clk2b (ENSMMDG00005007081)	ENSMMDG00005007087	cyp11c1 (ENSMMDG00005007096)	pklr (ENSMMDG00005007168)	ENSMMDG00005007176	zbtb7b (ENSMMDG00005007179)	NDUFV1 (ENSMMDG00005007186)
Cod	MODERN SPECIES	2	rab13 (ENSGMOG00000035469)	ENSGMOG00000019001	fdps (ENSGMOG00000018991)	ENSGMOG00000031890	dap3 (ENSGMOG00000018965)	ENSGMOG00000018954	rnf115a (ENSGMOG00000018949)	polr3c (ENSGMOG00000018937)	ITGA10 (ENSGMOG00000018921)	ENSGMOG00000026151	ENSGMOG00000037061	ENSGMOG00000023405	ENSGMOG00000025191	ENSGMOG00000033521	ENSGMOG00000008551 #17	ENSGMOG00000008535 #22	ENSGMOG00000016100	ENSGMOG00000031680	glipr2l (ENSGMOG00000016072)	ENSGMOG00000034945	ENSGMOG00000023251	ENSGMOG00000012039	ENSGMOG00000016215	ENSGMOG00000028624	ENSGMOG00000014145	ENSGMOG00000032740	ENSGMOG00000004295	ENSGMOG00000004325	ENSGMOG00000030105	ENSGMOG00000026655	ENSGMOG00000027655
Protacanthopterygii	ANCESTRAL SPECIES	1	ENSGT00940000158808	ENSGT01030000234586.B.a.b	ENSGT00940000159286.a.b.d	ENSGT00510000047412.a	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00940000164374.A.l	ENSGT00940000157471.a #37	ENSGT00940000156893 #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00940000177218	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT01030000234784	ENSGT00940000157619.a.a	ENSGT00940000158423	ENSGT00390000002799	ENSGT00940000157203.c	ENSGT00390000009464	ENSGT00390000004989.b	ENSGT00390000015248
Salmoninae	ANCESTRAL SPECIES	230												ENSGT00940000164374.A.l.a.a	ENSGT00940000157471.a #37	ENSGT00940000156893.`b.a #17	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00950000183094.a.m.d #23	ENSGT00940000159348.l.a	ENSGT00940000161136.h #27	ENSGT00940000154716.gc.a.g.a.b	ENSGT00940000161136.g.a #27	ENSGT00940000154716.gc.a.h	ENSGT01030000234515.a.b.a.a.f.j	ENSGT00940000157585 #34	ENSGT01030000234784	ENSGT00940000157619.a.a	ENSGT00940000158423.n	ENSGT00390000002799.c.b	ENSGT00940000158423.m	ENSGT00390000002799.d	ENSGT00940000157203.c
Huchen	DUPLICATION
Huchen	MODERN SPECIES	4043															ca14 (ENSHHUG00000004843) #17	prpf3 (ENSHHUG00000004851) #22	ENSHHUG00000004885	ENSHHUG00000004905 #23
Huchen	MODERN SPECIES	5109																prpf3 (ENSHHUG00000051713) #22	ENSHHUG00000051715	ENSHHUG00000051716 #23	ENSHHUG00000051718	ENSHHUG00000051719
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00390000011497.g #22
Salmo	ANCESTRAL SPECIES	93	ENSGT00510000047412.a.b	ENSGT00940000154947.l.c	ENSGT00390000008859.b.c.i.b	ENSGT00940000154743.A.a.a.k.b	ENSGT00940000161506.e	ENSGT00390000008859.b.c.i.a	ENSGT00940000154743.A.a.a.k.a	ENSGT00940000160219	ENSGT00390000010641.i.a.c.b	ENSGT00390000011497.h #22	ENSGT00950000183094.a.m.c #23	ENSGT00940000164374.A.l.a.a	ENSGT00940000157471.a #37	ENSGT00940000156893.`b.a #17	ENSGT00390000018360.a #20	ENSGT00390000011497.g #22	ENSGT00950000183094.a.m.d #23	ENSGT00940000159348.l.a	ENSGT00940000161136.g.a #27	ENSGT00940000154716.gc.a.h	ENSGT01030000234515.a.b.a.a.f.j.b	ENSGT00940000157585.d #34	ENSGT01030000234515.a.b.a.a.f.j.a	ENSGT00940000157585.c #34	ENSGT01030000234784	ENSGT00940000157619.a.a.e	ENSGT00970000197937.B	ENSGT00970000197937.A	ENSGT00390000015248.c.b.b.b	ENSGT00940000156698.d	ENSGT00900000141033.b.b
River trout	MODERN SPECIES	22	ENSSTUG00000000850	ENSSTUG00000000859	ENSSTUG00000000870	ENSSTUG00000000876	cyp11c1 (ENSSTUG00000000883)	ENSSTUG00000000890	pklr (ENSSTUG00000000928)	ENSSTUG00000001219	ENSSTUG00000001223	zbtb7b (ENSSTUG00000001230)	NDUFV1 (ENSSTUG00000001249)	ENSSTUG00000000199	setdb1b (ENSSTUG00000000385) #37	ENSSTUG00000000868	ca14 (ENSSTUG00000000877) #17	prpf3 (ENSSTUG00000000908) #22	ENSSTUG00000000939 #23	ENSSTUG00000000945
Atlantic salmon	MODERN SPECIES	11	ENSSSAG00000089819	ENSSSAG00000090830	ENSSSAG00000105629	ENSSSAG00000042238	clk2b (ENSSSAG00000041272)	ENSSSAG00000036512	pklr (ENSSSAG00000003928)	ENSSSAG00000083211	ENSSSAG00000116573	ENSSSAG00000107138	ENSSSAG00000099999	ENSSSAG00000094688	ENSSSAG00000050118 #37	ENSSSAG00000005168 #17	ENSSSAG00000113441 #20	PRPF3 (ENSSSAG00000121892) #22	ENSSSAG00000050867	ENSSSAG00000119214 #27	ENSSSAG00000105110	ENSSSAG00000114447	ENSSSAG00000005601 #34	rabp (ENSSSAG00000045726)	ITGA10 (ENSSSAG00000119547)	polr3c (ENSSSAG00000006875)	rnf115a (ENSSSAG00000101171)	ENSSSAG00000111661	asal (ENSSSAG00000005307)	dap3 (ENSSSAG00000057489)	ENSSSAG00000116239	fdps (ENSSSAG00000005943)	ENSSSAG00000101786
Salmoninae_a	ANCESTRAL SPECIES	184												ENSGT00940000164374.A.l.b	ENSGT00940000157471.a #37	ENSGT00940000156893.`b.a #17	ENSGT00390000018360.a #20	ENSGT00390000011497.h #22	ENSGT00950000183094.a.m.d #23	ENSGT00940000159348.l.a	ENSGT00940000161136.h #27	ENSGT00940000154716.gc.a.g.a.b	ENSGT00940000161136.g.a #27	ENSGT00940000154716.gc.a.h	ENSGT01030000234515.a.b.a.a.f.j
Oncorhynchus	ANCESTRAL SPECIES	152									ENSGT00510000047412.a.b	ENSGT00940000154947.l.a	ENSGT00940000161506.f	ENSGT00940000164374.A.l.b	ENSGT00940000157471.a #37	ENSGT00940000156893.`b.a #17	ENSGT00390000018360.a #20	ENSGT00390000011497.h #22	ENSGT00950000183094.a.m.d #23	ENSGT00940000159348.l.a.a.b	ENSGT00940000161136.h.a #27	ENSGT00940000154716.gc.a.g.a.b
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	21	ENSOMYG00000058550	ENSOMYG00000064105	ENSOMYG00000060247	ENSOMYG00000000423	ENSOMYG00000049867	cyp11b (ENSOMYG00000056586)	ENSOMYG00000000401	ENSOMYG00000000936	ENSOMYG00000058718	ENSOMYG00000054999	ENSOMYG00000074213	ENSOMYG00000000883	ENSOMYG00000000802 #37	ENSOMYG00000077358 #17	CIART (ENSOMYG00000000738) #20	ENSOMYG00000000719 #22	RPRD2 (ENSOMYG00000000645) #23	ENSOMYG00000000639	ENSOMYG00000065942 #27	ENSOMYG00000063165	ENSOMYG00000053266	ENSOMYG00000052016	ENSOMYG00000025402 #34	ITGA10 (ENSOMYG00000056132)	polr3c (ENSOMYG00000000589)	rnf115a (ENSOMYG00000000557)	ENSOMYG00000062477	dap3 (ENSOMYG00000000989)	ENSOMYG00000002525	ENSOMYG00000040268	dap3 (ENSOMYG00000002465)
Rainbow trout	MODERN SPECIES	11	ENSOMYG00000000369	ENSOMYG00000000342	clk2b (ENSOMYG00000069092)	ENSOMYG00000062252	ENSOMYG00000000305	pklr (ENSOMYG00000000259)	ENSOMYG00000000212	ENSOMYG00000000179	ENSOMYG00000000135	ENSOMYG00000074419	ENSOMYG00000068559	ENSOMYG00000005509	ENSOMYG00000005324 #37	ENSOMYG00000005055 #17	ENSOMYG00000004943 #20	ENSOMYG00000004840 #22	RPRD2 (ENSOMYG00000004723) #23	ENSOMYG00000004621	ENSOMYG00000061678 #27	ENSOMYG00000077550	ENSOMYG00000025358	arnt (ENSOMYG00000004218) #34	ENSOMYG00000003951	crabp2a (ENSOMYG00000054803)	ENSOMYG00000050019	ITGA10 (ENSOMYG00000062913)	polr3c (ENSOMYG00000002374)	rnf115a (ENSOMYG00000002292)	ENSOMYG00000002171	ENSOMYG00000065435	dap3 (ENSOMYG00000038844)
Oncorhynchus_a	ANCESTRAL SPECIES	91	ENSGT00940000158808.lb.a	ENSGT01030000234586.B.a.b.g.b	ENSGT00940000159286.a.b.d.i.b	ENSGT00510000047412.a.a	ENSGT00940000154947.l.b	ENSGT00940000161506.e	ENSGT00390000008859.b.c.i.a	ENSGT00940000154743.A.a.a.k.b	ENSGT00940000154743.A.a.a.k.a	ENSGT00940000160219	ENSGT00390000010641.i.a.d	ENSGT00940000164374.A.l.b	ENSGT00940000157471.a #37	ENSGT00940000156893.`b.a #17	ENSGT00390000018360.a #20	ENSGT00390000011497.h #22	ENSGT00950000183094.a.m.d #23	ENSGT00940000159348.l.a.a.a	ENSGT00940000154716.gc.a.h	ENSGT01030000234515.a.b.a.a.f.i.b.a	ENSGT00940000157585 #34	ENSGT01030000234784	ENSGT00940000157619.a.a	ENSGT00940000158423.m.c	ENSGT00390000002799.d.a	ENSGT00940000157203.c	ENSGT00390000009464.e.a	ENSGT00390000015248.c.b.b.c.a	ENSGT00940000156698.d.e	ENSGT00900000141033.b.b	ENSGT00900000141074
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	4	ENSOKIG00005035039	ENSOKIG00005035057	ENSOKIG00005035063	KHDC4 (ENSOKIG00005035089)	clk2b (ENSOKIG00005035118)	cyp11c1 (ENSOKIG00005035352)	pklr (ENSOKIG00005036130)	ENSOKIG00005038985	ENSOKIG00005039020	NDUFV1 (ENSOKIG00005039164)	zbtb7b (ENSOKIG00005039256)	trim108 (ENSOKIG00005039269)	setdb1b (ENSOKIG00005039364) #37	ENSOKIG00005040259 #17	CIART (ENSOKIG00005040281) #20	ENSOKIG00005040308 #22	RPRD2 (ENSOKIG00005040488) #23	ENSOKIG00005040601	CELF3 (ENSOKIG00005041453)	CERS2 (ENSOKIG00005041548)	arnt (ENSOKIG00005041615) #34	ENSOKIG00005041724	crabp2a (ENSOKIG00005041738)	ENSOKIG00005041755	ITGA10 (ENSOKIG00005041776)	polr3c (ENSOKIG00005041919)	rnf115a (ENSOKIG00005041962)	GBA1 (ENSOKIG00005042013)	dap3 (ENSOKIG00005042271)	ENSOKIG00005042469	ENSOKIG00005042490
Coho salmon	MODERN SPECIES	11	ENSOKIG00005002242	ENSOKIG00005002212	khdc4 (ENSOKIG00005002189)	clk2b (ENSOKIG00005002163)	ENSOKIG00005002155	ENSOKIG00005002118	pklr (ENSOKIG00005001668)	ENSOKIG00005001594	ZBTB7B (ENSOKIG00005001588)	ENSOKIG00005001581	NDUFV1 (ENSOKIG00005001550)	SETDB1 (ENSOKIG00005001468) #37	ENSOKIG00005001431	ca14 (ENSOKIG00005001426) #17	ENSOKIG00005001422	prpf3 (ENSOKIG00005001403) #22	ENSOKIG00005001395 #23	ENSOKIG00005001393 #23	ENSOKIG00005001205	ENSOKIG00005001131	ENSOKIG00005001124 #27	ENSOKIG00005001119	ENSOKIG00005001113	CERS2 (ENSOKIG00005001110)	ARNT (ENSOKIG00005001010) #34	ENSOKIG00005000959	ITGA10 (ENSOKIG00005000888)	polr3c (ENSOKIG00005000854)	rnf115a (ENSOKIG00005000844)	ENSOKIG00005000826	ENSOKIG00005000818
Chinook salmon	MODERN SPECIES	15	emg1 (ENSOTSG00005034894)	ENSOTSG00005015692	cnot3a (ENSOTSG00005015621)	tfpt (ENSOTSG00005015614)	ndufa3 (ENSOTSG00005015612)	ENSOTSG00005015611	zgc:158689 (ENSOTSG00005015610)	ENSOTSG00005015609	ENSOTSG00005015607	CYTH2 (ENSOTSG00005015510)	ENSOTSG00005015507	ENSOTSG00005015506	ENSOTSG00005015505	rpl18 (ENSOTSG00005015415)	si:ch211-120k19.1 (ENSOTSG00005015413)	prpf3 (ENSOTSG00005015244) #22	ENSOTSG00005015242	ENSOTSG00005015241	dbf4 (ENSOTSG00005015240)	slc25a40 (ENSOTSG00005015238)	ENSOTSG00005015236	rundc3b (ENSOTSG00005015235)	ABCB1 (ENSOTSG00005015147)	crot (ENSOTSG00005015145)	ENSOTSG00005015143	ENSOTSG00005015141	acbd7 (ENSOTSG00005015139)	rpp38 (ENSOTSG00005015138)	nmt2 (ENSOTSG00005015134)	FAM171A1 (ENSOTSG00005015133)	nr4a3 (ENSOTSG00005015131)
Salmo	ANCESTRAL SPECIES	93							ENSGT00510000047412.a.b	ENSGT00940000154947.l.c	ENSGT00390000008859.b.c.i.b	ENSGT00940000154743.A.a.a.k.b	ENSGT00940000161506.e	ENSGT00390000008859.b.c.i.a	ENSGT00940000154743.A.a.a.k.a	ENSGT00940000160219	ENSGT00390000010641.i.a.c.b	ENSGT00390000011497.h #22	ENSGT00950000183094.a.m.c #23	ENSGT00940000164374.A.l.a.a	ENSGT00940000157471.a #37	ENSGT00940000156893.`b.a #17	ENSGT00390000018360.a #20	ENSGT00390000011497.g #22	ENSGT00950000183094.a.m.d #23	ENSGT00940000159348.l.a	ENSGT00940000161136.g.a #27	ENSGT00940000154716.gc.a.h	ENSGT01030000234515.a.b.a.a.f.j.b	ENSGT00940000157585.d #34	ENSGT01030000234515.a.b.a.a.f.j.a	ENSGT00940000157585.c #34	ENSGT01030000234784
River trout	MODERN SPECIES	30	si:ch211-120k19.1 (ENSSTUG00000037484)	ENSSTUG00000037479	ENSSTUG00000037463	khdc4 (ENSSTUG00000037441)	clk2b (ENSSTUG00000037388)	pklr (ENSSTUG00000036585)	ENSSTUG00000036502	ENSSTUG00000036481	zbtb7b (ENSSTUG00000036463)	NDUFV1 (ENSSTUG00000036337)	ENSSTUG00000036315	setdb1b (ENSSTUG00000036191) #37	ENSSTUG00000036180	ca14 (ENSSTUG00000036164) #17	CIART (ENSSTUG00000036159) #20	prpf3 (ENSSTUG00000036051) #22	RPRD2 (ENSSTUG00000036040) #23	ENSSTUG00000035564	ENSSTUG00000035534	ino80c (ENSSTUG00000035529)	ENSSTUG00000035490	ENSSTUG00000035476	DYNC1LI1 (ENSSTUG00000035365)	cmtm6 (ENSSTUG00000035349)	cmtm7 (ENSSTUG00000035342)	ENSSTUG00000035335	ENSSTUG00000035328	ENSSTUG00000035315	ENSSTUG00000027646	ENSSTUG00000027498	COL6A6 (ENSSTUG00000027468)
Atlantic salmon	MODERN SPECIES	24	ENSSSAG00000050017	ENSSSAG00000103802	ENSSSAG00000083656	clk2b (ENSSSAG00000110405)	ENSSSAG00000086140	pklr (ENSSSAG00000035711)	ENSSSAG00000046802	ENSSSAG00000101361	ENSSSAG00000085935	ENSSSAG00000086337	ENSSSAG00000005206	ENSSSAG00000040011	ENSSSAG00000084036 #37	ENSSSAG00000050586 #17	CIART (ENSSSAG00000120551) #20	ENSSSAG00000050737 #22	RPRD2 (ENSSSAG00000005473) #23	ENSSSAG00000005496	ENSSSAG00000090396	ENSSSAG00000060546 #27	ENSSSAG00000065111	ENSSSAG00000116457	ENSSSAG00000059839	ENSSSAG00000081758 #34	crabp2a (ENSSSAG00000082499)	polr3c (ENSSSAG00000005255)	ENSSSAG00000115950	rnf115a (ENSSSAG00000005342)	ENSSSAG00000099611	ENSSSAG00000087453	ENSSSAG00000086072
Northern pike	MODERN SPECIES	19	rpl18 (ENSELUG00000014490)	ENSELUG00000028871	si:ch211-120k19.1 (ENSELUG00000024753)	ENSELUG00000025179	ENSELUG00000014443	ENSELUG00000014342	khdc4 (ENSELUG00000014317)	cyp11c1 (ENSELUG00000014194)	pklr (ENSELUG00000014172)	ENSELUG00000001418	zbtb7b (ENSELUG00000014058)	NDUFV1 (ENSELUG00000014045)	setdb1b (ENSELUG00000013948) #37	ca14 (ENSELUG00000013739) #17	ENSELUG00000013661	prpf3 (ENSELUG00000013624) #22	RPRD2 (ENSELUG00000013579) #23	ENSELUG00000013552	ENSELUG00000013504 #27	CELF3 (ENSELUG00000013477)	CERS2 (ENSELUG00000013435)	arnt (ENSELUG00000013390) #34	ENSELUG00000013307	ENSELUG00000013287	ITGA10 (ENSELUG00000013251)	polr3c (ENSELUG00000013209)	rnf115a (ENSELUG00000013123)	GBA1 (ENSELUG00000013090)	ENSELUG00000013061	dap3 (ENSELUG00000000477)	ENSELUG00000012966
Osteoglossiformes	ANCESTRAL SPECIES		ENSGT00950000182904.a.a.a.a.a	ENSGT00950000182891.b.b.a	ENSGT00940000155363.w	ENSGT00530000063335.B.a.a	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.a	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000166610	ENSGT00390000018360.a #20	ENSGT00390000011497 #22	ENSGT00950000183094.a.m #23	ENSGT00940000159348	ENSGT00940000161136 #27	ENSGT00940000154716	ENSGT01030000234515.a.b.a.a.f	ENSGT00940000157585 #34	ENSGT00940000157471.a #37	ENSGT00940000164374.A	ENSGT00940000154947.k	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c.k	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a
P. kingsleyae	MODERN SPECIES	252												ENSPKIG00000010408	ca14 (ENSPKIG00000010425) #17	mrps21 (ENSPKIG00000010445)	CIART (ENSPKIG00000010455) #20	prpf3 (ENSPKIG00000010501) #22	RPRD2 (ENSPKIG00000010576) #23	ENSPKIG00000010658	ENSPKIG00000010786 #27	celf3a (ENSPKIG00000010833)	CERS2 (ENSPKIG00000010860)	arnt (ENSPKIG00000010903) #34	setdb1b (ENSPKIG00000010963) #37	ENSPKIG00000011018	clk2a (ENSPKIG00000011053)	ENSPKIG00000011075	cyp11c1 (ENSPKIG00000011095)	pklr (ENSPKIG00000011117)	ENSPKIG00000011152	zbtb7b (ENSPKIG00000011228)	khdc4 (ENSPKIG00000011269)
Asian bonytongue	MODERN SPECIES	9	KCNN3 (ENSSFOG00015010219)	ENSSFOG00015021749	ENSSFOG00015021754	ENSSFOG00015021777	fdps (ENSSFOG00015021791)	ash1l (ENSSFOG00015021808)	dap3 (ENSSFOG00015021822)	GBA1 (ENSSFOG00015021833)	rnf115a (ENSSFOG00015021845)	polr3c (ENSSFOG00015021863)	ITGA10 (ENSSFOG00015021906)	crabp2a (ENSSFOG00015021942)	ca14 (ENSSFOG00015021971) #17	ENSSFOG00015021982	CIART (ENSSFOG00015021990) #20	prpf3 (ENSSFOG00015022014) #22	RPRD2 (ENSSFOG00015022056) #23	ENSSFOG00015022086	ENSSFOG00015022109 #27	celf3a (ENSSFOG00015022130)	CERS2 (ENSSFOG00015030046)	arnt (ENSSFOG00015022161) #34	setdb1b (ENSSFOG00015022183) #37	trim108 (ENSSFOG00015022196)	ENSSFOG00015031896	clk2a (ENSSFOG00015022213)	ENSSFOG00015022224	cyp11c1 (ENSSFOG00015022229)	pklr (ENSSFOG00015022235)	ENSSFOG00015022252	zbtb7b (ENSSFOG00015030270)
Reedfish	MODERN SPECIES	159											ENSECRG00000017646	ints3 (ENSECRG00000017614)	ints3 (ENSECRG00000017555)	MRPS21 (ENSECRG00000017506) #21	CIART (ENSECRG00000017479) #20	prpf3 (ENSECRG00000017440) #22	RPRD2 (ENSECRG00000017387) #23	ENSECRG00000017350