Cyprinoidei	ANCESTRAL SPECIES	54	ENSGT00940000156028.t	ENSGT00390000007237.s	ENSGT00940000163093.a.a.a.a	ENSGT00940000163093.a.a.a.b.a	ENSGT00940000163093.a.a.a.b.b	ENSGT00940000161428	ENSGT00940000160457.a	ENSGT00510000046499.y	ENSGT00950000183023.A.h.d.b.b #11	ENSGT00950000183023.B.m.b #16	ENSGT00990000204702 #17	ENSGT00940000163239 #18	ENSGT00940000166571 #19	ENSGT00390000016048 #20	ENSGT00950000182944.A.a.b #21	ENSGT00950000182944.A.a.a.a #25	ENSGT00950000182944.A.a.a.b #24	ENSGT00390000015701 #26	ENSGT00940000155677.b #28	ENSGT00940000159782.b #29	ENSGT00390000015655.a.m.b #30	ENSGT00940000156648.f #31	ENSGT00940000156536.e.a.j #32	ENSGT00390000009497.a #33	ENSGT00940000155350.h #34	ENSGT00940000156251.b #35	ENSGT00390000006320 #36	ENSGT00390000007918 #37	ENSGT00390000018651.a	ENSGT00940000156466	ENSGT00990000204705
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	13	or62b1 (ENSDARG00000092577) #7	or62b4 (ENSDARG00000105729) #8	or62b3 (ENSDARG00000095417) #9	or62b5 (ENSDARG00000105706) #10	or62a1 (ENSDARG00000094714) #11	or62a3 (ENSDARG00000093856) #12	or61a1 (ENSDARG00000092558) #13	or61c2 (ENSDARG00000092707) #14	or61c1 (ENSDARG00000094326) #15	ENSDARG00000096264 #16	defbl1 (ENSDARG00000075161) #17	pold3 (ENSDARG00000076169) #18	chrdl2 (ENSDARG00000078916) #19	ENSDARG00000089578 #20	neu3.1 (ENSDARG00000096382) #21	neu3.2 (ENSDARG00000010047) #22	neu3.3 (ENSDARG00000058327) #23	neu3.4 (ENSDARG00000096381) #24	neu3.5 (ENSDARG00000096368) #25	wdr73 (ENSDARG00000023152) #26	defbl2 (ENSDARG00000096380) #27	gria4b (ENSDARG00000059368) #28	elmod1 (ENSDARG00000062056) #29	slc35f2 (ENSDARG00000069745) #30	CUL5 (ENSDARG00000004260) #31	CAPN5 (ENSDARG00000069748) #32	ompb (ENSDARG00000032380) #33	MYO7A (ENSDARG00000044632) #34	ENSDARG00000079293 #35	nadk2 (ENSDARG00000007181) #36	skp2 (ENSDARG00000004937) #37
Zebrafish	MODERN SPECIES	13	or62b5 (ENSDARG00000105706) #10	or62a1 (ENSDARG00000094714) #11	or62a3 (ENSDARG00000093856) #12	or61a1 (ENSDARG00000092558) #13	or61c2 (ENSDARG00000092707) #14	or61c1 (ENSDARG00000094326) #15	ENSDARG00000096264 #16	defbl1 (ENSDARG00000075161) #17	pold3 (ENSDARG00000076169) #18	chrdl2 (ENSDARG00000078916) #19	ENSDARG00000089578 #20	neu3.1 (ENSDARG00000096382) #21	neu3.2 (ENSDARG00000010047) #22	neu3.3 (ENSDARG00000058327) #23	neu3.4 (ENSDARG00000096381) #24	neu3.5 (ENSDARG00000096368) #25	wdr73 (ENSDARG00000023152) #26	defbl2 (ENSDARG00000096380) #27	gria4b (ENSDARG00000059368) #28	elmod1 (ENSDARG00000062056) #29	slc35f2 (ENSDARG00000069745) #30	CUL5 (ENSDARG00000004260) #31	CAPN5 (ENSDARG00000069748) #32	ompb (ENSDARG00000032380) #33	MYO7A (ENSDARG00000044632) #34	ENSDARG00000079293 #35	nadk2 (ENSDARG00000007181) #36	skp2 (ENSDARG00000004937) #37	ENSDARG00000093126	lmbrd2b (ENSDARG00000017312)	capslb (ENSDARG00000003414)
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	144	ENSGT00390000007237.s.a	ENSGT00940000163093.a.a.a.a	ENSGT00940000163093.a.a.a.b.a	ENSGT00940000163093.a.a.a.b.b	ENSGT00940000161428.e	ENSGT00940000160457.a.b	ENSGT00950000183048.b.a.d.i	ENSGT00950000183023.A.h.c.a.a ##16	ENSGT00950000183023.A.h.c.b.a.a.a #8	ENSGT00950000183023.A.h.c.b.b #9	ENSGT00950000183023.A.h.d.b.a.b #12	ENSGT00950000183023.B.m.b.b #16	ENSGT00990000204702.b #17	ENSGT00940000163239.e #18	ENSGT00940000166571.a #19	ENSGT00950000182944.A.a.a.a.a.a #25	ENSGT00950000182944.A.a.a.b.d #24
Cyprininae_a	ANCESTRAL SPECIES	89	ENSGT00940000163093.a.a.a.b.a	ENSGT00940000163093.a.a.a.b.b	ENSGT00940000161428.e	ENSGT00940000160457.a.b	ENSGT00950000183048.b.a.d.i	ENSGT00950000183023.A.h.c.a.a ##16	ENSGT00950000183023.A.h.c.b.a.a.a #8	ENSGT00950000183023.A.h.c.b.a.b #10	ENSGT00950000183023.A.h.d.b.a.b #12	ENSGT00950000183023.A.h.d.b.b.a.a.a.b #11	ENSGT00950000183023.A.h.d.b.b.b #11	ENSGT00950000183023.B.m.b.b #16	ENSGT00990000204702.b #17	ENSGT00940000163239.e #18	ENSGT00940000166571.a #19	ENSGT00950000182944.A.a.a.a.a.a #25	ENSGT00950000182944.A.a.a.b.d #24	ENSGT00950000182944.A.a.a.a.b #25	ENSGT00390000015701.g #26	ENSGT00940000155677.b.l #28	ENSGT00940000159782.b.j #29	ENSGT00390000015655.a.m.b.f #30	ENSGT00940000156648.f.a #31	ENSGT00940000156536.e.a.j.b #32	ENSGT00390000009497.a.e #33	ENSGT00940000155350.h.f #34	ENSGT00940000156251.b #35	ENSGT00390000006320.t #36	ENSGT00390000007918.b #37	ENSGT00390000018651.a.g	ENSGT00990000204705.a
Golden-line barbel	MODERN SPECIES	2002												defbl1 (ENSSGRG00000019000) #17	pold3 (ENSSGRG00000019002) #18	chrdl2 (ENSSGRG00000019008) #19	ENSSGRG00000019009 #20	NEU3 (ENSSGRG00000019012) #25
Common carp reference	MODERN SPECIES	38	ENSCCRG00000008906	ENSCCRG00000080655	ENSCCRG00000065299	or62b4 (ENSCCRG00000055223) #8	or62b5 (ENSCCRG00000080334) #10	or62a3 (ENSCCRG00000060080) #12	or62a1 (ENSCCRG00000011710) #11	or62a1 (ENSCCRG00000024126) #11	or62a1 (ENSCCRG00000028160) #11	ENSCCRG00000024121 #16	defbl1 (ENSCCRG00000031763) #17	defbl1 (ENSCCRG00000016744) #17	pold3 (ENSCCRG00000041029) #18	ENSCCRG00000067418	chrdl2 (ENSCCRG00000076415) #19	ENSCCRG00000003660 #25	neu3.4 (ENSCCRG00000067519) #24	ENSCCRG00000080549 #25	wdr73 (ENSCCRG00000003680) #26	gria4b (ENSCCRG00000067130) #28	elmod1 (ENSCCRG00000023504) #29	slc35f2 (ENSCCRG00000007018) #30	ENSCCRG00000046721 #31	CAPN5 (ENSCCRG00000017389) #32	MYO7A (ENSCCRG00000050029) #34	GDPD4 (ENSCCRG00000050622) #35	nadk2 (ENSCCRG00000011371) #36	skp2 (ENSCCRG00000069379) #37	lmbrd2b (ENSCCRG00000050645)	il7r (ENSCCRG00000063390)	myo5b (ENSCCRG00000050749)
Cyprininae	ANCESTRAL SPECIES	207	ENSGT01080000257533.a	ENSGT00610000087474.c	ENSGT00940000166868.a.a	ENSGT00940000164695.b.b	ENSGT00940000160599.q	ENSGT00940000156028.t.b	ENSGT00390000007237.s.b	ENSGT00950000183023.A.h.d.b.a.a.a #12	ENSGT00950000183023.A.h.d.b.a.a.b #12	ENSGT00950000183023.B.m.b.a #16	ENSGT00990000204702.a #17	ENSGT00940000163239.f #18	ENSGT00940000166571.b #19	ENSGT00390000016048 #20	ENSGT00950000182944.A.a.b.a #21	ENSGT00950000182944.A.a.a.a.a.b #25	ENSGT00950000182944.A.a.a.b.c.b #24	ENSGT00390000015701.h #26	ENSGT00650000094922.p #27	ENSGT00940000155677.b.k #28	ENSGT00940000159782.b.i #29	ENSGT00390000015655.a.m.b.e #30	ENSGT00940000156648.f.b #31	ENSGT00940000156536.e.a.j.a #32	ENSGT00390000009497.a.f #33	ENSGT00940000155350.h.e #34	ENSGT00390000006320.s #36	ENSGT00390000007918.a #37	ENSGT00390000018651.a.h	ENSGT00940000156466.eb	ENSGT00990000204705.b
Goldfish	MODERN SPECIES	13	rnf180b (ENSCARG00000004098)	b9d2 (ENSCARG00000004078)	ENSCARG00000004050	cbr1l (ENSCARG00000004022)	ENSCARG00000004010	ENSCARG00000004001	ENSCARG00000003996	or62a2 (ENSCARG00000003975) ##16	or62a2 (ENSCARG00000003968) ##16	or62a3 (ENSCARG00000003948) #12	or62a3 (ENSCARG00000003931) #12	defbl1 (ENSCARG00000003914) #17	pold3 (ENSCARG00000003881) #18	chrdl2 (ENSCARG00000003838) #19	neu3.1 (ENSCARG00000003806) #21	NEU3 (ENSCARG00000070462) #25	defbl2 (ENSCARG00000070461) #27	gria4b (ENSCARG00000070450) #28	elmod1 (ENSCARG00000070445) #29	slc35f2 (ENSCARG00000070444) #30	CUL5 (ENSCARG00000070443) #31	ompb (ENSCARG00000070442) #33	CAPN5 (ENSCARG00000070441) #32	MYO7A (ENSCARG00000070438) #34	nadk2 (ENSCARG00000070436) #36	skp2 (ENSCARG00000070435) #37	lmbrd2b (ENSCARG00000070420)	capslb (ENSCARG00000070418)	il7r (ENSCARG00000070416)	myo5b (ENSCARG00000070339)	chek1 (ENSCARG00000070315)
Cyprininae_a	ANCESTRAL SPECIES	33	ENSGT00940000156028.t.b	ENSGT00390000007237.s.b	ENSGT00940000163093.a.a.b	ENSGT00940000161428.f	ENSGT00940000160457.a.a	ENSGT00940000168097	ENSGT00950000183048.b.a.d.j	ENSGT00950000183023.A.h.d.b.a.a.a #12	ENSGT00950000183023.A.h.d.b.a.a.b #12	ENSGT00950000183023.B.m.b.a #16	ENSGT00990000204702.a #17	ENSGT00940000163239.f #18	ENSGT00940000166571.b #19	ENSGT00390000016048 #20	ENSGT00950000182944.A.a.b.a #21	ENSGT00950000182944.A.a.a.a.a.b #25	ENSGT00950000182944.A.a.a.b.c.b #24	ENSGT00390000015701.h #26	ENSGT00650000094922.p #27	ENSGT00940000155677.b.k #28	ENSGT00940000159782.b.i #29	ENSGT00390000015655.a.m.b.e #30	ENSGT00940000156648.f.b #31	ENSGT00940000156536.e.a.j.a #32	ENSGT00390000009497.a.f #33	ENSGT00940000155350.h.e #34	ENSGT00390000006320.s #36	ENSGT00390000007918.a #37	ENSGT00390000018651.a.h	ENSGT00940000156466.eb	ENSGT00990000204705.b
Common carp reference	MODERN SPECIES	45	b9d2 (ENSCCRG00000063478)	ENSCCRG00000008975	cbr1l (ENSCCRG00000056610)	ENSCCRG00000034010	or62a3 (ENSCCRG00000053349) #12	or62a3 (ENSCCRG00000009341) #12	or62a3 (ENSCCRG00000063021) #12	ENSCCRG00000062614	or62a3 (ENSCCRG00000069479) #12	ENSCCRG00000037328 #16	defbl1 (ENSCCRG00000037329) #17	pold3 (ENSCCRG00000037335) #18	chrdl2 (ENSCCRG00000063343) #19	ENSCCRG00000037448 #20	neu3.1 (ENSCCRG00000054230) #21	ENSCCRG00000037233 #25	defbl2 (ENSCCRG00000062722) #27	gria4b (ENSCCRG00000064152) #28	elmod1 (ENSCCRG00000060203) #29	slc35f2 (ENSCCRG00000025636) #30	ENSCCRG00000071860 #31	ENSCCRG00000049995 #32	ompb (ENSCCRG00000077840) #33	ENSCCRG00000017754 #34	nadk2 (ENSCCRG00000050625) #36	skp2 (ENSCCRG00000059949) #37	lmbrd2b (ENSCCRG00000011451)	capslb (ENSCCRG00000061757)	il7r (ENSCCRG00000056341)	ENSCCRG00000055703	myo5b (ENSCCRG00000012479)
Golden-line barbel	MODERN SPECIES	343													or62a2 (ENSSGRG00000044819) ##16	pold3 (ENSSGRG00000044820) #18	chrdl2 (ENSSGRG00000044822) #19	NEU3 (ENSSGRG00000044824) #25	ENSSGRG00000044825 #24	wdr73 (ENSSGRG00000044827) #26	defbl2 (ENSSGRG00000044829) #27	gria4b (ENSSGRG00000044952) #28	elmod1 (ENSSGRG00000048337) #29	slc35f2 (ENSSGRG00000048338) #30	CUL5 (ENSSGRG00000048342) #31	CAPN5 (ENSSGRG00000048363) #32	ompb (ENSSGRG00000048373) #33	MYO7A (ENSSGRG00000048382) #34	nadk2 (ENSSGRG00000048405) #36	skp2 (ENSSGRG00000048412) #37	lmbrd2b (ENSSGRG00000048422)	capslb (ENSSGRG00000048599)	il7r (ENSSGRG00000048600)
Cyprininae	ANCESTRAL SPECIES	201																ENSGT00950000182944.A.a.a.a.b #25	ENSGT00390000015701.g #26	ENSGT00940000155677.b.l #28	ENSGT00940000159782.b.j #29	ENSGT00390000015655.a.m.b.f #30	ENSGT00940000156648.f.a #31	ENSGT00940000156536.e.a.j.b #32	ENSGT00390000009497.a.e #33	ENSGT00940000155350.h.f #34	ENSGT00940000156251.b #35	ENSGT00390000006320.t #36	ENSGT00390000007918.b #37	ENSGT00390000018651.a.g	ENSGT00990000204705.a	ENSGT00940000155402.a.b.e.b	ENSGT00970000193642
Cyprininae_a	ANCESTRAL SPECIES	89	ENSGT00940000161428.e	ENSGT00940000160457.a.b	ENSGT00950000183048.b.a.d.i	ENSGT00950000183023.A.h.c.a.a ##16	ENSGT00950000183023.A.h.c.b.a.a.a #8	ENSGT00950000183023.A.h.c.b.a.b #10	ENSGT00950000183023.A.h.d.b.a.b #12	ENSGT00950000183023.A.h.d.b.b.a.a.a.b #11	ENSGT00950000183023.A.h.d.b.b.b #11	ENSGT00950000183023.B.m.b.b #16	ENSGT00990000204702.b #17	ENSGT00940000163239.e #18	ENSGT00940000166571.a #19	ENSGT00950000182944.A.a.a.a.a.a #25	ENSGT00950000182944.A.a.a.b.d #24	ENSGT00950000182944.A.a.a.a.b #25	ENSGT00390000015701.g #26	ENSGT00940000155677.b.l #28	ENSGT00940000159782.b.j #29	ENSGT00390000015655.a.m.b.f #30	ENSGT00940000156648.f.a #31	ENSGT00940000156536.e.a.j.b #32	ENSGT00390000009497.a.e #33	ENSGT00940000155350.h.f #34	ENSGT00940000156251.b #35	ENSGT00390000006320.t #36	ENSGT00390000007918.b #37	ENSGT00390000018651.a.g	ENSGT00990000204705.a	ENSGT00940000155402.a.b.e.b
Common carp reference	MODERN SPECIES	38	ENSCCRG00000065299	or62b4 (ENSCCRG00000055223) #8	or62b5 (ENSCCRG00000080334) #10	or62a3 (ENSCCRG00000060080) #12	or62a1 (ENSCCRG00000011710) #11	or62a1 (ENSCCRG00000024126) #11	or62a1 (ENSCCRG00000028160) #11	ENSCCRG00000024121 #16	defbl1 (ENSCCRG00000031763) #17	defbl1 (ENSCCRG00000016744) #17	pold3 (ENSCCRG00000041029) #18	ENSCCRG00000067418	chrdl2 (ENSCCRG00000076415) #19	ENSCCRG00000003660 #25	neu3.4 (ENSCCRG00000067519) #24	ENSCCRG00000080549 #25	wdr73 (ENSCCRG00000003680) #26	gria4b (ENSCCRG00000067130) #28	elmod1 (ENSCCRG00000023504) #29	slc35f2 (ENSCCRG00000007018) #30	ENSCCRG00000046721 #31	CAPN5 (ENSCCRG00000017389) #32	MYO7A (ENSCCRG00000050029) #34	GDPD4 (ENSCCRG00000050622) #35	nadk2 (ENSCCRG00000011371) #36	skp2 (ENSCCRG00000069379) #37	lmbrd2b (ENSCCRG00000050645)	il7r (ENSCCRG00000063390)	myo5b (ENSCCRG00000050749)	ENSCCRG00000070030	nectin1a (ENSCCRG00000022764)
Golden-line barbel	MODERN SPECIES	2489																NEU3 (ENSSGRG00000013128) #25	wdr73 (ENSSGRG00000013129) #26
Goldfish	MODERN SPECIES	40	ENSCARG00000037383 #8	or62b3 (ENSCARG00000037401) #9	or62a1 (ENSCARG00000037435) #11	or62a1 (ENSCARG00000037468) #11	or62a1 (ENSCARG00000037484) #11	or62a1 (ENSCARG00000037505) #11	or62a1 (ENSCARG00000037515) #11	ENSCARG00000037556 #16	ENSCARG00000037594 #16	defbl1 (ENSCARG00000037610) #17	pold3 (ENSCARG00000037652) #18	chrdl2 (ENSCARG00000037905) #19	ENSCARG00000037976 #20	neu3.1 (ENSCARG00000038003) #21	NEU3 (ENSCARG00000038008) #24	NEU3 (ENSCARG00000038028) #25	NEU3 (ENSCARG00000038041) #24	wdr73 (ENSCARG00000038059) #26	gria4b (ENSCARG00000038091) #28	elmod1 (ENSCARG00000038454) #29	slc35f2 (ENSCARG00000038502) #30	CUL5 (ENSCARG00000038536) #31	CAPN5 (ENSCARG00000024584) #32	ompb (ENSCARG00000025699) #33	MYO7A (ENSCARG00000025821) #34	ENSCARG00000029274 #35	nadk2 (ENSCARG00000029310) #36	skp2 (ENSCARG00000029482) #37	lmbrd2b (ENSCARG00000029545)	il7r (ENSCARG00000029729)	myo5b (ENSCARG00000029808)