Otophysi ANCESTRAL SPECIES 37 ENSGT00940000156028.t ENSGT00390000007237.s ENSGT00940000161428 ENSGT00940000160457.a ENSGT00940000168097 ENSGT01030000234640.b ENSGT00950000183048.b.a.c ENSGT00950000183023.A.h #12 ENSGT00950000183023.B.m.a #13 ENSGT00950000183023.B.m.b #16 ENSGT00990000204702 #17 ENSGT00940000163239 #18 ENSGT00940000166571 #19 ENSGT00390000016048 #20 ENSGT00950000182944.A.a.b #21 ENSGT00950000182944.A.a.a #25 ENSGT00390000015701 #26 ENSGT00940000155677.b #28 ENSGT00940000159782.b #29 ENSGT00390000015655.a.m.b #30 ENSGT00940000156648.f #31 ENSGT00940000156536.e.a.j #32 ENSGT00390000009497.a #33 ENSGT00940000155350.h #34 ENSGT00940000156251.b #35 ENSGT00390000006320 #36 ENSGT00390000007918 #37 ENSGT00970000193642 ENSGT00940000159682 ENSGT00940000163088.b ENSGT00940000168885.c Cyprinoidei DUPLICATION Cyprinoidei ANCESTRAL SPECIES 54 ENSGT00940000156028.t ENSGT00390000007237.s ENSGT00940000163093.a.a.a.a ENSGT00940000163093.a.a.a.b.a ENSGT00940000163093.a.a.a.b.b ENSGT00940000161428 ENSGT00940000160457.a ENSGT00510000046499.y ENSGT00950000183023.A.h.d.b.b #11 ENSGT00950000183023.B.m.b #16 ENSGT00990000204702 #17 ENSGT00940000163239 #18 ENSGT00940000166571 #19 ENSGT00390000016048 #20 ENSGT00950000182944.A.a.b #21 ENSGT00950000182944.A.a.a.a #25 ENSGT00950000182944.A.a.a.b #24 ENSGT00390000015701 #26 ENSGT00940000155677.b #28 ENSGT00940000159782.b #29 ENSGT00390000015655.a.m.b #30 ENSGT00940000156648.f #31 ENSGT00940000156536.e.a.j #32 ENSGT00390000009497.a #33 ENSGT00940000155350.h #34 ENSGT00940000156251.b #35 ENSGT00390000006320 #36 ENSGT00390000007918 #37 ENSGT00390000018651.a ENSGT00940000156466 ENSGT00990000204705 Zebrafish DUPLICATION Zebrafish MODERN SPECIES 13 or62b1 (ENSDARG00000092577) #7 or62b4 (ENSDARG00000105729) #8 or62b3 (ENSDARG00000095417) #9 or62b5 (ENSDARG00000105706) #10 or62a1 (ENSDARG00000094714) #11 or62a3 (ENSDARG00000093856) #12 or61a1 (ENSDARG00000092558) #13 or61c2 (ENSDARG00000092707) #14 or61c1 (ENSDARG00000094326) #15 ENSDARG00000096264 #16 defbl1 (ENSDARG00000075161) #17 pold3 (ENSDARG00000076169) #18 chrdl2 (ENSDARG00000078916) #19 ENSDARG00000089578 #20 neu3.1 (ENSDARG00000096382) #21 neu3.2 (ENSDARG00000010047) #22 neu3.3 (ENSDARG00000058327) #23 neu3.4 (ENSDARG00000096381) #24 neu3.5 (ENSDARG00000096368) #25 wdr73 (ENSDARG00000023152) #26 defbl2 (ENSDARG00000096380) #27 gria4b (ENSDARG00000059368) #28 elmod1 (ENSDARG00000062056) #29 slc35f2 (ENSDARG00000069745) #30 CUL5 (ENSDARG00000004260) #31 CAPN5 (ENSDARG00000069748) #32 ompb (ENSDARG00000032380) #33 MYO7A (ENSDARG00000044632) #34 ENSDARG00000079293 #35 nadk2 (ENSDARG00000007181) #36 skp2 (ENSDARG00000004937) #37 Zebrafish MODERN SPECIES 13 or62b5 (ENSDARG00000105706) #10 or62a1 (ENSDARG00000094714) #11 or62a3 (ENSDARG00000093856) #12 or61a1 (ENSDARG00000092558) #13 or61c2 (ENSDARG00000092707) #14 or61c1 (ENSDARG00000094326) #15 ENSDARG00000096264 #16 defbl1 (ENSDARG00000075161) #17 pold3 (ENSDARG00000076169) #18 chrdl2 (ENSDARG00000078916) #19 ENSDARG00000089578 #20 neu3.1 (ENSDARG00000096382) #21 neu3.2 (ENSDARG00000010047) #22 neu3.3 (ENSDARG00000058327) #23 neu3.4 (ENSDARG00000096381) #24 neu3.5 (ENSDARG00000096368) #25 wdr73 (ENSDARG00000023152) #26 defbl2 (ENSDARG00000096380) #27 gria4b (ENSDARG00000059368) #28 elmod1 (ENSDARG00000062056) #29 slc35f2 (ENSDARG00000069745) #30 CUL5 (ENSDARG00000004260) #31 CAPN5 (ENSDARG00000069748) #32 ompb (ENSDARG00000032380) #33 MYO7A (ENSDARG00000044632) #34 ENSDARG00000079293 #35 nadk2 (ENSDARG00000007181) #36 skp2 (ENSDARG00000004937) #37 ENSDARG00000093126 lmbrd2b (ENSDARG00000017312) capslb (ENSDARG00000003414) Cyprininae DUPLICATION Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 144 ENSGT00390000007237.s.a ENSGT00940000163093.a.a.a.a ENSGT00940000163093.a.a.a.b.a ENSGT00940000163093.a.a.a.b.b ENSGT00940000161428.e ENSGT00940000160457.a.b ENSGT00950000183048.b.a.d.i ENSGT00950000183023.A.h.c.a.a ##16 ENSGT00950000183023.A.h.c.b.a.a.a #8 ENSGT00950000183023.A.h.c.b.b #9 ENSGT00950000183023.A.h.d.b.a.b #12 ENSGT00950000183023.B.m.b.b #16 ENSGT00990000204702.b #17 ENSGT00940000163239.e #18 ENSGT00940000166571.a #19 ENSGT00950000182944.A.a.a.a.a.a #25 ENSGT00950000182944.A.a.a.b.d #24 Cyprininae_a ANCESTRAL SPECIES 89 ENSGT00940000163093.a.a.a.b.a ENSGT00940000163093.a.a.a.b.b ENSGT00940000161428.e ENSGT00940000160457.a.b ENSGT00950000183048.b.a.d.i ENSGT00950000183023.A.h.c.a.a ##16 ENSGT00950000183023.A.h.c.b.a.a.a #8 ENSGT00950000183023.A.h.c.b.a.b #10 ENSGT00950000183023.A.h.d.b.a.b #12 ENSGT00950000183023.A.h.d.b.b.a.a.a.b #11 ENSGT00950000183023.A.h.d.b.b.b #11 ENSGT00950000183023.B.m.b.b #16 ENSGT00990000204702.b #17 ENSGT00940000163239.e #18 ENSGT00940000166571.a #19 ENSGT00950000182944.A.a.a.a.a.a #25 ENSGT00950000182944.A.a.a.b.d #24 ENSGT00950000182944.A.a.a.a.b #25 ENSGT00390000015701.g #26 ENSGT00940000155677.b.l #28 ENSGT00940000159782.b.j #29 ENSGT00390000015655.a.m.b.f #30 ENSGT00940000156648.f.a #31 ENSGT00940000156536.e.a.j.b #32 ENSGT00390000009497.a.e #33 ENSGT00940000155350.h.f #34 ENSGT00940000156251.b #35 ENSGT00390000006320.t #36 ENSGT00390000007918.b #37 ENSGT00390000018651.a.g ENSGT00990000204705.a Golden-line barbel MODERN SPECIES 2002 defbl1 (ENSSGRG00000019000) #17 pold3 (ENSSGRG00000019002) #18 chrdl2 (ENSSGRG00000019008) #19 ENSSGRG00000019009 #20 NEU3 (ENSSGRG00000019012) #25 Common carp reference MODERN SPECIES 38 ENSCCRG00000008906 ENSCCRG00000080655 ENSCCRG00000065299 or62b4 (ENSCCRG00000055223) #8 or62b5 (ENSCCRG00000080334) #10 or62a3 (ENSCCRG00000060080) #12 or62a1 (ENSCCRG00000011710) #11 or62a1 (ENSCCRG00000024126) #11 or62a1 (ENSCCRG00000028160) #11 ENSCCRG00000024121 #16 defbl1 (ENSCCRG00000031763) #17 defbl1 (ENSCCRG00000016744) #17 pold3 (ENSCCRG00000041029) #18 ENSCCRG00000067418 chrdl2 (ENSCCRG00000076415) #19 ENSCCRG00000003660 #25 neu3.4 (ENSCCRG00000067519) #24 ENSCCRG00000080549 #25 wdr73 (ENSCCRG00000003680) #26 gria4b (ENSCCRG00000067130) #28 elmod1 (ENSCCRG00000023504) #29 slc35f2 (ENSCCRG00000007018) #30 ENSCCRG00000046721 #31 CAPN5 (ENSCCRG00000017389) #32 MYO7A (ENSCCRG00000050029) #34 GDPD4 (ENSCCRG00000050622) #35 nadk2 (ENSCCRG00000011371) #36 skp2 (ENSCCRG00000069379) #37 lmbrd2b (ENSCCRG00000050645) il7r (ENSCCRG00000063390) myo5b (ENSCCRG00000050749) Cyprininae ANCESTRAL SPECIES 207 ENSGT01080000257533.a ENSGT00610000087474.c ENSGT00940000166868.a.a ENSGT00940000164695.b.b ENSGT00940000160599.q ENSGT00940000156028.t.b ENSGT00390000007237.s.b ENSGT00950000183023.A.h.d.b.a.a.a #12 ENSGT00950000183023.A.h.d.b.a.a.b #12 ENSGT00950000183023.B.m.b.a #16 ENSGT00990000204702.a #17 ENSGT00940000163239.f #18 ENSGT00940000166571.b #19 ENSGT00390000016048 #20 ENSGT00950000182944.A.a.b.a #21 ENSGT00950000182944.A.a.a.a.a.b #25 ENSGT00950000182944.A.a.a.b.c.b #24 ENSGT00390000015701.h #26 ENSGT00650000094922.p #27 ENSGT00940000155677.b.k #28 ENSGT00940000159782.b.i #29 ENSGT00390000015655.a.m.b.e #30 ENSGT00940000156648.f.b #31 ENSGT00940000156536.e.a.j.a #32 ENSGT00390000009497.a.f #33 ENSGT00940000155350.h.e #34 ENSGT00390000006320.s #36 ENSGT00390000007918.a #37 ENSGT00390000018651.a.h ENSGT00940000156466.eb ENSGT00990000204705.b Goldfish MODERN SPECIES 13 rnf180b (ENSCARG00000004098) b9d2 (ENSCARG00000004078) ENSCARG00000004050 cbr1l (ENSCARG00000004022) ENSCARG00000004010 ENSCARG00000004001 ENSCARG00000003996 or62a2 (ENSCARG00000003975) ##16 or62a2 (ENSCARG00000003968) ##16 or62a3 (ENSCARG00000003948) #12 or62a3 (ENSCARG00000003931) #12 defbl1 (ENSCARG00000003914) #17 pold3 (ENSCARG00000003881) #18 chrdl2 (ENSCARG00000003838) #19 neu3.1 (ENSCARG00000003806) #21 NEU3 (ENSCARG00000070462) #25 defbl2 (ENSCARG00000070461) #27 gria4b (ENSCARG00000070450) #28 elmod1 (ENSCARG00000070445) #29 slc35f2 (ENSCARG00000070444) #30 CUL5 (ENSCARG00000070443) #31 ompb (ENSCARG00000070442) #33 CAPN5 (ENSCARG00000070441) #32 MYO7A (ENSCARG00000070438) #34 nadk2 (ENSCARG00000070436) #36 skp2 (ENSCARG00000070435) #37 lmbrd2b (ENSCARG00000070420) capslb (ENSCARG00000070418) il7r (ENSCARG00000070416) myo5b (ENSCARG00000070339) chek1 (ENSCARG00000070315) Cyprininae_a ANCESTRAL SPECIES 33 ENSGT00940000156028.t.b ENSGT00390000007237.s.b ENSGT00940000163093.a.a.b ENSGT00940000161428.f ENSGT00940000160457.a.a ENSGT00940000168097 ENSGT00950000183048.b.a.d.j ENSGT00950000183023.A.h.d.b.a.a.a #12 ENSGT00950000183023.A.h.d.b.a.a.b #12 ENSGT00950000183023.B.m.b.a #16 ENSGT00990000204702.a #17 ENSGT00940000163239.f #18 ENSGT00940000166571.b #19 ENSGT00390000016048 #20 ENSGT00950000182944.A.a.b.a #21 ENSGT00950000182944.A.a.a.a.a.b #25 ENSGT00950000182944.A.a.a.b.c.b #24 ENSGT00390000015701.h #26 ENSGT00650000094922.p #27 ENSGT00940000155677.b.k #28 ENSGT00940000159782.b.i #29 ENSGT00390000015655.a.m.b.e #30 ENSGT00940000156648.f.b #31 ENSGT00940000156536.e.a.j.a #32 ENSGT00390000009497.a.f #33 ENSGT00940000155350.h.e #34 ENSGT00390000006320.s #36 ENSGT00390000007918.a #37 ENSGT00390000018651.a.h ENSGT00940000156466.eb ENSGT00990000204705.b Common carp reference MODERN SPECIES 45 b9d2 (ENSCCRG00000063478) ENSCCRG00000008975 cbr1l (ENSCCRG00000056610) ENSCCRG00000034010 or62a3 (ENSCCRG00000053349) #12 or62a3 (ENSCCRG00000009341) #12 or62a3 (ENSCCRG00000063021) #12 ENSCCRG00000062614 or62a3 (ENSCCRG00000069479) #12 ENSCCRG00000037328 #16 defbl1 (ENSCCRG00000037329) #17 pold3 (ENSCCRG00000037335) #18 chrdl2 (ENSCCRG00000063343) #19 ENSCCRG00000037448 #20 neu3.1 (ENSCCRG00000054230) #21 ENSCCRG00000037233 #25 defbl2 (ENSCCRG00000062722) #27 gria4b (ENSCCRG00000064152) #28 elmod1 (ENSCCRG00000060203) #29 slc35f2 (ENSCCRG00000025636) #30 ENSCCRG00000071860 #31 ENSCCRG00000049995 #32 ompb (ENSCCRG00000077840) #33 ENSCCRG00000017754 #34 nadk2 (ENSCCRG00000050625) #36 skp2 (ENSCCRG00000059949) #37 lmbrd2b (ENSCCRG00000011451) capslb (ENSCCRG00000061757) il7r (ENSCCRG00000056341) ENSCCRG00000055703 myo5b (ENSCCRG00000012479) Golden-line barbel MODERN SPECIES 343 or62a2 (ENSSGRG00000044819) ##16 pold3 (ENSSGRG00000044820) #18 chrdl2 (ENSSGRG00000044822) #19 NEU3 (ENSSGRG00000044824) #25 ENSSGRG00000044825 #24 wdr73 (ENSSGRG00000044827) #26 defbl2 (ENSSGRG00000044829) #27 gria4b (ENSSGRG00000044952) #28 elmod1 (ENSSGRG00000048337) #29 slc35f2 (ENSSGRG00000048338) #30 CUL5 (ENSSGRG00000048342) #31 CAPN5 (ENSSGRG00000048363) #32 ompb (ENSSGRG00000048373) #33 MYO7A (ENSSGRG00000048382) #34 nadk2 (ENSSGRG00000048405) #36 skp2 (ENSSGRG00000048412) #37 lmbrd2b (ENSSGRG00000048422) capslb (ENSSGRG00000048599) il7r (ENSSGRG00000048600) Cyprininae ANCESTRAL SPECIES 201 ENSGT00950000182944.A.a.a.a.b #25 ENSGT00390000015701.g #26 ENSGT00940000155677.b.l #28 ENSGT00940000159782.b.j #29 ENSGT00390000015655.a.m.b.f #30 ENSGT00940000156648.f.a #31 ENSGT00940000156536.e.a.j.b #32 ENSGT00390000009497.a.e #33 ENSGT00940000155350.h.f #34 ENSGT00940000156251.b #35 ENSGT00390000006320.t #36 ENSGT00390000007918.b #37 ENSGT00390000018651.a.g ENSGT00990000204705.a ENSGT00940000155402.a.b.e.b ENSGT00970000193642 Cyprininae_a ANCESTRAL SPECIES 89 ENSGT00940000161428.e ENSGT00940000160457.a.b ENSGT00950000183048.b.a.d.i ENSGT00950000183023.A.h.c.a.a ##16 ENSGT00950000183023.A.h.c.b.a.a.a #8 ENSGT00950000183023.A.h.c.b.a.b #10 ENSGT00950000183023.A.h.d.b.a.b #12 ENSGT00950000183023.A.h.d.b.b.a.a.a.b #11 ENSGT00950000183023.A.h.d.b.b.b #11 ENSGT00950000183023.B.m.b.b #16 ENSGT00990000204702.b #17 ENSGT00940000163239.e #18 ENSGT00940000166571.a #19 ENSGT00950000182944.A.a.a.a.a.a #25 ENSGT00950000182944.A.a.a.b.d #24 ENSGT00950000182944.A.a.a.a.b #25 ENSGT00390000015701.g #26 ENSGT00940000155677.b.l #28 ENSGT00940000159782.b.j #29 ENSGT00390000015655.a.m.b.f #30 ENSGT00940000156648.f.a #31 ENSGT00940000156536.e.a.j.b #32 ENSGT00390000009497.a.e #33 ENSGT00940000155350.h.f #34 ENSGT00940000156251.b #35 ENSGT00390000006320.t #36 ENSGT00390000007918.b #37 ENSGT00390000018651.a.g ENSGT00990000204705.a ENSGT00940000155402.a.b.e.b Common carp reference MODERN SPECIES 38 ENSCCRG00000065299 or62b4 (ENSCCRG00000055223) #8 or62b5 (ENSCCRG00000080334) #10 or62a3 (ENSCCRG00000060080) #12 or62a1 (ENSCCRG00000011710) #11 or62a1 (ENSCCRG00000024126) #11 or62a1 (ENSCCRG00000028160) #11 ENSCCRG00000024121 #16 defbl1 (ENSCCRG00000031763) #17 defbl1 (ENSCCRG00000016744) #17 pold3 (ENSCCRG00000041029) #18 ENSCCRG00000067418 chrdl2 (ENSCCRG00000076415) #19 ENSCCRG00000003660 #25 neu3.4 (ENSCCRG00000067519) #24 ENSCCRG00000080549 #25 wdr73 (ENSCCRG00000003680) #26 gria4b (ENSCCRG00000067130) #28 elmod1 (ENSCCRG00000023504) #29 slc35f2 (ENSCCRG00000007018) #30 ENSCCRG00000046721 #31 CAPN5 (ENSCCRG00000017389) #32 MYO7A (ENSCCRG00000050029) #34 GDPD4 (ENSCCRG00000050622) #35 nadk2 (ENSCCRG00000011371) #36 skp2 (ENSCCRG00000069379) #37 lmbrd2b (ENSCCRG00000050645) il7r (ENSCCRG00000063390) myo5b (ENSCCRG00000050749) ENSCCRG00000070030 nectin1a (ENSCCRG00000022764) Golden-line barbel MODERN SPECIES 2489 NEU3 (ENSSGRG00000013128) #25 wdr73 (ENSSGRG00000013129) #26 Goldfish MODERN SPECIES 40 ENSCARG00000037383 #8 or62b3 (ENSCARG00000037401) #9 or62a1 (ENSCARG00000037435) #11 or62a1 (ENSCARG00000037468) #11 or62a1 (ENSCARG00000037484) #11 or62a1 (ENSCARG00000037505) #11 or62a1 (ENSCARG00000037515) #11 ENSCARG00000037556 #16 ENSCARG00000037594 #16 defbl1 (ENSCARG00000037610) #17 pold3 (ENSCARG00000037652) #18 chrdl2 (ENSCARG00000037905) #19 ENSCARG00000037976 #20 neu3.1 (ENSCARG00000038003) #21 NEU3 (ENSCARG00000038008) #24 NEU3 (ENSCARG00000038028) #25 NEU3 (ENSCARG00000038041) #24 wdr73 (ENSCARG00000038059) #26 gria4b (ENSCARG00000038091) #28 elmod1 (ENSCARG00000038454) #29 slc35f2 (ENSCARG00000038502) #30 CUL5 (ENSCARG00000038536) #31 CAPN5 (ENSCARG00000024584) #32 ompb (ENSCARG00000025699) #33 MYO7A (ENSCARG00000025821) #34 ENSCARG00000029274 #35 nadk2 (ENSCARG00000029310) #36 skp2 (ENSCARG00000029482) #37 lmbrd2b (ENSCARG00000029545) il7r (ENSCARG00000029729) myo5b (ENSCARG00000029808) Cyprinoidei ANCESTRAL SPECIES 54 ENSGT00390000007237.s ENSGT00940000163093.a.a.a.a ENSGT00940000163093.a.a.a.b.a ENSGT00940000163093.a.a.a.b.b ENSGT00940000161428 ENSGT00940000160457.a ENSGT00510000046499.y ENSGT00950000183023.A.h.d.b.b #11 ENSGT00950000183023.B.m.b #16 ENSGT00990000204702 #17 ENSGT00940000163239 #18 ENSGT00940000166571 #19 ENSGT00390000016048 #20 ENSGT00950000182944.A.a.b #21 ENSGT00950000182944.A.a.a.a #25 ENSGT00950000182944.A.a.a.b #24 ENSGT00390000015701 #26 ENSGT00940000155677.b #28 ENSGT00940000159782.b #29 ENSGT00390000015655.a.m.b #30 ENSGT00940000156648.f #31 ENSGT00940000156536.e.a.j #32 ENSGT00390000009497.a #33 ENSGT00940000155350.h #34 ENSGT00940000156251.b #35 ENSGT00390000006320 #36 ENSGT00390000007918 #37 ENSGT00390000018651.a ENSGT00940000156466 ENSGT00990000204705 ENSGT00940000155402.a.b.e Zebrafish DUPLICATION Zebrafish MODERN SPECIES 13 or62b4 (ENSDARG00000105729) #8 or62b3 (ENSDARG00000095417) #9 or62b5 (ENSDARG00000105706) #10 or62a1 (ENSDARG00000094714) #11 or62a3 (ENSDARG00000093856) #12 or61a1 (ENSDARG00000092558) #13 or61c2 (ENSDARG00000092707) #14 or61c1 (ENSDARG00000094326) #15 ENSDARG00000096264 #16 defbl1 (ENSDARG00000075161) #17 pold3 (ENSDARG00000076169) #18 chrdl2 (ENSDARG00000078916) #19 ENSDARG00000089578 #20 neu3.1 (ENSDARG00000096382) #21 neu3.2 (ENSDARG00000010047) #22 neu3.3 (ENSDARG00000058327) #23 neu3.4 (ENSDARG00000096381) #24 neu3.5 (ENSDARG00000096368) #25 wdr73 (ENSDARG00000023152) #26 defbl2 (ENSDARG00000096380) #27 gria4b (ENSDARG00000059368) #28 elmod1 (ENSDARG00000062056) #29 slc35f2 (ENSDARG00000069745) #30 CUL5 (ENSDARG00000004260) #31 CAPN5 (ENSDARG00000069748) #32 ompb (ENSDARG00000032380) #33 MYO7A (ENSDARG00000044632) #34 ENSDARG00000079293 #35 nadk2 (ENSDARG00000007181) #36 skp2 (ENSDARG00000004937) #37 ENSDARG00000093126 Zebrafish MODERN SPECIES 13 or62b3 (ENSDARG00000095417) #9 or62b5 (ENSDARG00000105706) #10 or62a1 (ENSDARG00000094714) #11 or62a3 (ENSDARG00000093856) #12 or61a1 (ENSDARG00000092558) #13 or61c2 (ENSDARG00000092707) #14 or61c1 (ENSDARG00000094326) #15 ENSDARG00000096264 #16 defbl1 (ENSDARG00000075161) #17 pold3 (ENSDARG00000076169) #18 chrdl2 (ENSDARG00000078916) #19 ENSDARG00000089578 #20 neu3.1 (ENSDARG00000096382) #21 neu3.2 (ENSDARG00000010047) #22 neu3.3 (ENSDARG00000058327) #23 neu3.4 (ENSDARG00000096381) #24 neu3.5 (ENSDARG00000096368) #25 wdr73 (ENSDARG00000023152) #26 defbl2 (ENSDARG00000096380) #27 gria4b (ENSDARG00000059368) #28 elmod1 (ENSDARG00000062056) #29 slc35f2 (ENSDARG00000069745) #30 CUL5 (ENSDARG00000004260) #31 CAPN5 (ENSDARG00000069748) #32 ompb (ENSDARG00000032380) #33 MYO7A (ENSDARG00000044632) #34 ENSDARG00000079293 #35 nadk2 (ENSDARG00000007181) #36 skp2 (ENSDARG00000004937) #37 ENSDARG00000093126 lmbrd2b (ENSDARG00000017312) Cyprininae DUPLICATION Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 1892 ENSGT00950000182944.A.a.b.b #21 ENSGT00950000182944.A.a.a.b.c.a #24 Goldfish MODERN SPECIES 40 ENSCARG00000037363 #8 ENSCARG00000037383 #8 or62b3 (ENSCARG00000037401) #9 or62a1 (ENSCARG00000037435) #11 or62a1 (ENSCARG00000037468) #11 or62a1 (ENSCARG00000037484) #11 or62a1 (ENSCARG00000037505) #11 or62a1 (ENSCARG00000037515) #11 ENSCARG00000037556 #16 ENSCARG00000037594 #16 defbl1 (ENSCARG00000037610) #17 pold3 (ENSCARG00000037652) #18 chrdl2 (ENSCARG00000037905) #19 ENSCARG00000037976 #20 neu3.1 (ENSCARG00000038003) #21 NEU3 (ENSCARG00000038008) #24 NEU3 (ENSCARG00000038028) #25 NEU3 (ENSCARG00000038041) #24 wdr73 (ENSCARG00000038059) #26 gria4b (ENSCARG00000038091) #28 elmod1 (ENSCARG00000038454) #29 slc35f2 (ENSCARG00000038502) #30 CUL5 (ENSCARG00000038536) #31 CAPN5 (ENSCARG00000024584) #32 ompb (ENSCARG00000025699) #33 MYO7A (ENSCARG00000025821) #34 ENSCARG00000029274 #35 nadk2 (ENSCARG00000029310) #36 skp2 (ENSCARG00000029482) #37 lmbrd2b (ENSCARG00000029545) il7r (ENSCARG00000029729) Cyprininae_a ANCESTRAL SPECIES ENSGT00950000182944.A.a.a.b.c.a #24 Golden-line barbel MODERN SPECIES 4373 ENSSGRG00000001961 #24 Cyprininae ANCESTRAL SPECIES 207 ENSGT00610000087474.c ENSGT00940000166868.a.a ENSGT00940000164695.b.b ENSGT00940000160599.q ENSGT00940000156028.t.b ENSGT00390000007237.s.b ENSGT00950000183023.A.h.d.b.a.a.a #12 ENSGT00950000183023.A.h.d.b.a.a.b #12 ENSGT00950000183023.B.m.b.a #16 ENSGT00990000204702.a #17 ENSGT00940000163239.f #18 ENSGT00940000166571.b #19 ENSGT00390000016048 #20 ENSGT00950000182944.A.a.b.a #21 ENSGT00950000182944.A.a.a.a.a.b #25 ENSGT00950000182944.A.a.a.b.c.b #24 ENSGT00390000015701.h #26 ENSGT00650000094922.p #27 ENSGT00940000155677.b.k #28 ENSGT00940000159782.b.i #29 ENSGT00390000015655.a.m.b.e #30 ENSGT00940000156648.f.b #31 ENSGT00940000156536.e.a.j.a #32 ENSGT00390000009497.a.f #33 ENSGT00940000155350.h.e #34 ENSGT00390000006320.s #36 ENSGT00390000007918.a #37 ENSGT00390000018651.a.h ENSGT00940000156466.eb ENSGT00990000204705.b ENSGT00940000155402.a.b.e.a Goldfish MODERN SPECIES 40 or62b3 (ENSCARG00000037401) #9 or62a1 (ENSCARG00000037435) #11 or62a1 (ENSCARG00000037468) #11 or62a1 (ENSCARG00000037484) #11 or62a1 (ENSCARG00000037505) #11 or62a1 (ENSCARG00000037515) #11 ENSCARG00000037556 #16 ENSCARG00000037594 #16 defbl1 (ENSCARG00000037610) #17 pold3 (ENSCARG00000037652) #18 chrdl2 (ENSCARG00000037905) #19 ENSCARG00000037976 #20 neu3.1 (ENSCARG00000038003) #21 NEU3 (ENSCARG00000038008) #24 NEU3 (ENSCARG00000038028) #25 NEU3 (ENSCARG00000038041) #24 wdr73 (ENSCARG00000038059) #26 gria4b (ENSCARG00000038091) #28 elmod1 (ENSCARG00000038454) #29 slc35f2 (ENSCARG00000038502) #30 CUL5 (ENSCARG00000038536) #31 CAPN5 (ENSCARG00000024584) #32 ompb (ENSCARG00000025699) #33 MYO7A (ENSCARG00000025821) #34 ENSCARG00000029274 #35 nadk2 (ENSCARG00000029310) #36 skp2 (ENSCARG00000029482) #37 lmbrd2b (ENSCARG00000029545) il7r (ENSCARG00000029729) myo5b (ENSCARG00000029808) cfap53 (ENSCARG00000032666) Cyprininae_a ANCESTRAL SPECIES 33 ENSGT00390000007237.s.b ENSGT00940000163093.a.a.b ENSGT00940000161428.f ENSGT00940000160457.a.a ENSGT00940000168097 ENSGT00950000183048.b.a.d.j ENSGT00950000183023.A.h.d.b.a.a.a #12 ENSGT00950000183023.A.h.d.b.a.a.b #12 ENSGT00950000183023.B.m.b.a #16 ENSGT00990000204702.a #17 ENSGT00940000163239.f #18 ENSGT00940000166571.b #19 ENSGT00390000016048 #20 ENSGT00950000182944.A.a.b.a #21 ENSGT00950000182944.A.a.a.a.a.b #25 ENSGT00950000182944.A.a.a.b.c.b #24 ENSGT00390000015701.h #26 ENSGT00650000094922.p #27 ENSGT00940000155677.b.k #28 ENSGT00940000159782.b.i #29 ENSGT00390000015655.a.m.b.e #30 ENSGT00940000156648.f.b #31 ENSGT00940000156536.e.a.j.a #32 ENSGT00390000009497.a.f #33 ENSGT00940000155350.h.e #34 ENSGT00390000006320.s #36 ENSGT00390000007918.a #37 ENSGT00390000018651.a.h ENSGT00940000156466.eb ENSGT00990000204705.b ENSGT00940000155402.a.b.e.a Golden-line barbel MODERN SPECIES 343 or62a2 (ENSSGRG00000044819) ##16 pold3 (ENSSGRG00000044820) #18 chrdl2 (ENSSGRG00000044822) #19 NEU3 (ENSSGRG00000044824) #25 ENSSGRG00000044825 #24 wdr73 (ENSSGRG00000044827) #26 defbl2 (ENSSGRG00000044829) #27 gria4b (ENSSGRG00000044952) #28 elmod1 (ENSSGRG00000048337) #29 slc35f2 (ENSSGRG00000048338) #30 CUL5 (ENSSGRG00000048342) #31 CAPN5 (ENSSGRG00000048363) #32 ompb (ENSSGRG00000048373) #33 MYO7A (ENSSGRG00000048382) #34 nadk2 (ENSSGRG00000048405) #36 skp2 (ENSSGRG00000048412) #37 lmbrd2b (ENSSGRG00000048422) capslb (ENSSGRG00000048599) il7r (ENSSGRG00000048600) myo5b (ENSSGRG00000048632) Cyprininae ANCESTRAL SPECIES 144 ENSGT00940000163093.a.a.a.a ENSGT00940000163093.a.a.a.b.a ENSGT00940000163093.a.a.a.b.b ENSGT00940000161428.e ENSGT00940000160457.a.b ENSGT00950000183048.b.a.d.i ENSGT00950000183023.A.h.c.a.a ##16 ENSGT00950000183023.A.h.c.b.a.a.a #8 ENSGT00950000183023.A.h.c.b.b #9 ENSGT00950000183023.A.h.d.b.a.b #12 ENSGT00950000183023.B.m.b.b #16 ENSGT00990000204702.b #17 ENSGT00940000163239.e #18 ENSGT00940000166571.a #19 ENSGT00950000182944.A.a.a.a.a.a #25 ENSGT00950000182944.A.a.a.b.d #24 Cyprininae_a ANCESTRAL SPECIES 89 ENSGT00940000163093.a.a.a.b.b ENSGT00940000161428.e ENSGT00940000160457.a.b ENSGT00950000183048.b.a.d.i ENSGT00950000183023.A.h.c.a.a ##16 ENSGT00950000183023.A.h.c.b.a.a.a #8 ENSGT00950000183023.A.h.c.b.a.b #10 ENSGT00950000183023.A.h.d.b.a.b #12 ENSGT00950000183023.A.h.d.b.b.a.a.a.b #11 ENSGT00950000183023.A.h.d.b.b.b #11 ENSGT00950000183023.B.m.b.b #16 ENSGT00990000204702.b #17 ENSGT00940000163239.e #18 ENSGT00940000166571.a #19 ENSGT00950000182944.A.a.a.a.a.a #25 ENSGT00950000182944.A.a.a.b.d #24 ENSGT00950000182944.A.a.a.a.b #25 ENSGT00390000015701.g #26 ENSGT00940000155677.b.l #28 ENSGT00940000159782.b.j #29 ENSGT00390000015655.a.m.b.f #30 ENSGT00940000156648.f.a #31 ENSGT00940000156536.e.a.j.b #32 ENSGT00390000009497.a.e #33 ENSGT00940000155350.h.f #34 ENSGT00940000156251.b #35 ENSGT00390000006320.t #36 ENSGT00390000007918.b #37 ENSGT00390000018651.a.g ENSGT00990000204705.a ENSGT00940000155402.a.b.e.b Common carp reference MODERN SPECIES 38 ENSCCRG00000080655 ENSCCRG00000065299 or62b4 (ENSCCRG00000055223) #8 or62b5 (ENSCCRG00000080334) #10 or62a3 (ENSCCRG00000060080) #12 or62a1 (ENSCCRG00000011710) #11 or62a1 (ENSCCRG00000024126) #11 or62a1 (ENSCCRG00000028160) #11 ENSCCRG00000024121 #16 defbl1 (ENSCCRG00000031763) #17 defbl1 (ENSCCRG00000016744) #17 pold3 (ENSCCRG00000041029) #18 ENSCCRG00000067418 chrdl2 (ENSCCRG00000076415) #19 ENSCCRG00000003660 #25 neu3.4 (ENSCCRG00000067519) #24 ENSCCRG00000080549 #25 wdr73 (ENSCCRG00000003680) #26 gria4b (ENSCCRG00000067130) #28 elmod1 (ENSCCRG00000023504) #29 slc35f2 (ENSCCRG00000007018) #30 ENSCCRG00000046721 #31 CAPN5 (ENSCCRG00000017389) #32 MYO7A (ENSCCRG00000050029) #34 GDPD4 (ENSCCRG00000050622) #35 nadk2 (ENSCCRG00000011371) #36 skp2 (ENSCCRG00000069379) #37 lmbrd2b (ENSCCRG00000050645) il7r (ENSCCRG00000063390) myo5b (ENSCCRG00000050749) ENSCCRG00000070030 Characiphysae ANCESTRAL SPECIES 23 ENSGT00510000046499 ENSGT01100000263522.B.b.l ENSGT00940000167612.b ENSGT00950000183048.b.b.c ENSGT00950000183023.A.g.b ##16 ENSGT01030000234640.b ENSGT00950000183048.b.a.c ENSGT00950000183023.A.h #12 ENSGT00950000183023.B.m.a #13 ENSGT00950000183023.B.m.b #16 ENSGT00990000204702 #17 ENSGT00940000163239 #18 ENSGT00940000166571 #19 ENSGT00390000016048 #20 ENSGT00950000182944.A.a.b #21 ENSGT00950000182944.A.a.a #25 ENSGT00390000015701 #26 ENSGT00940000155677.b #28 ENSGT00940000159782.b #29 ENSGT00390000015655.a.m.b #30 ENSGT00940000156536.e.a.j #32 ENSGT00940000155350.h #34 ENSGT00940000156251.b #35 ENSGT00390000006320 #36 ENSGT00390000007918 #37 ENSGT00390000018651.a ENSGT00990000204705 ENSGT00940000155402.a.b ENSGT00970000193642 ENSGT00940000159682 ENSGT01100000263551.b.b.a.e.a Characiphysae_b ANCESTRAL SPECIES 21 ENSGT00940000167612.b ENSGT00950000183048.b.b.c ENSGT01030000234640.a.a.e ENSGT00950000183023.A.g.b ##16 ENSGT01030000234640.b ENSGT00950000183048.b.a.c ENSGT00950000183023.A.h.a.b #12 ENSGT00950000183023.B.m.a #13 ENSGT00950000183023.A.h.a.a #12 ENSGT00950000183023.B.m.b #16 ENSGT00990000204702 #17 ENSGT00940000163239 #18 ENSGT00940000166571 #19 ENSGT00940000178035 ENSGT00950000182944.A.a.b #21 ENSGT00950000182944.A.a.a #25 ENSGT00390000015701 #26 ENSGT00940000155677.b #28 ENSGT00940000159782.b #29 ENSGT00390000015655.a.m.b #30 ENSGT00940000156536.e.a.j #32 ENSGT00940000155350.h #34 ENSGT00940000156251.b #35 ENSGT00390000006320 #36 ENSGT00390000007918 #37 ENSGT00390000018651.a ENSGT00990000204705 ENSGT00940000155402.a.b ENSGT00970000193642 ENSGT00940000159682 ENSGT00940000163088.b Characoidei ANCESTRAL SPECIES 128 ENSGT00950000183048.b.b.c ENSGT01030000234640.a.a.e ENSGT00950000183023.A.g.b ##16 ENSGT00950000183023.A.g.a.b ##16 ENSGT01030000234640.b ENSGT00950000183048.b.a.c ENSGT00950000183023.A.h.a.b #12 ENSGT00950000183023.B.m.a #13 ENSGT00950000183023.A.h.a.a #12 ENSGT00950000183023.B.m.b #16 ENSGT00990000204702 #17 ENSGT00940000163239 #18 ENSGT00940000166571 #19 ENSGT00940000178035 ENSGT00950000182944.A.a.b #21 ENSGT00950000182944.A.a.a #25 ENSGT00390000015701 #26 ENSGT00940000155677.b #28 ENSGT00940000159782.b #29 ENSGT00390000015655.a.m.b #30 ENSGT00940000156536.e.a.j #32 ENSGT00940000155350.h #34 ENSGT00940000156251.b #35 ENSGT00390000006320 #36 ENSGT00390000007918 #37 ENSGT00390000018651.a ENSGT00990000204705 ENSGT00940000155402.a.b ENSGT00970000193642 ENSGT00940000159682 ENSGT00940000163088.b Red-bellied piranha MODERN SPECIES 343 ENSPNAG00000017396 ENSPNAG00000017385 ENSPNAG00000017373 #12 ENSPNAG00000017343 #12 or61a1 (ENSPNAG00000017297) #13 or61c1 (ENSPNAG00000017281) #16 defbl1 (ENSPNAG00000017275) #17 chrdl2 (ENSPNAG00000017261) #19 ENSPNAG00000017212 ENSPNAG00000017139 neu3.1 (ENSPNAG00000017133) #21 ENSPNAG00000017118 neu3.5 (ENSPNAG00000017066) #25 wdr73 (ENSPNAG00000017053) #26 defbl2 (ENSPNAG00000017019) #27 ENSPNAG00000017011 gria4b (ENSPNAG00000003456) #28 elmod1 (ENSPNAG00000016782) #29 CAPN5 (ENSPNAG00000016661) #32 slc35f2 (ENSPNAG00000016587) #30 ENSPNAG00000016576 MYO7A (ENSPNAG00000016536) #34 ENSPNAG00000016308 #35 capslb (ENSPNAG00000016284) il7r (ENSPNAG00000016278) myo5b (ENSPNAG00000016264) cfap53 (ENSPNAG00000016196) chek1 (ENSPNAG00000016155) Channel catfish MODERN SPECIES 11 prf1.9 (ENSIPUG00000008640) prf1.1 (ENSIPUG00000008551) COX6A (ENSIPUG00000008523) ENSIPUG00000008095 ENSIPUG00000008051 ENSIPUG00000008038 elob (ENSIPUG00000008023) Arl6ip1 (ENSIPUG00000007976) Smg1 (ENSIPUG00000007769) clec19a (ENSIPUG00000007735) SYT17 (ENSIPUG00000007642) thoc6 (ENSIPUG00000007615) srrm2 (ENSIPUG00000007551) ENSIPUG00000007492 tspan4b (ENSIPUG00000007479) neu3.5 (ENSIPUG00000007468) #25 ENSIPUG00000007452 hsd3b7 (ENSIPUG00000007436) setd1a (ENSIPUG00000007413) ENSIPUG00000007342 KAT8 (ENSIPUG00000007291) rnf25 (ENSIPUG00000007223) ENSIPUG00000007202 ENSIPUG00000007192 pax10 (ENSIPUG00000007187) rcn3 (ENSIPUG00000007133) nosip (ENSIPUG00000007055) ENSIPUG00000007036 trpm4a (ENSIPUG00000006995) scaf1 (ENSIPUG00000006965) ENSIPUG00000006849