Rodentia_B	ANCESTRAL SPECIES	14	ENSGT00940000156279	ENSGT00950000183015.A	ENSGT00940000154544.a	ENSGT00390000010591	ENSGT00390000012248 #11	ENSGT00940000157885 #12	ENSGT00390000004284 #13	ENSGT00940000156530.c #14	ENSGT00390000018052 #15	ENSGT00950000183091.A.b #16	ENSGT00390000015405 #17	ENSGT00390000009597 #18	ENSGT00940000156327 #19	ENSGT00940000156841 #20	ENSGT00940000154556 #21	ENSGT00940000154958 #22	ENSGT00810000125473.A #23	ENSGT00940000157081 #24	ENSGT00530000063867.b #25	ENSGT00940000154186.a #26	ENSGT00390000001858 #27	ENSGT00940000155337 #28	ENSGT00950000183050.b.b.a #29	ENSGT00390000000583 #30	ENSGT00940000153464.B #31	ENSGT00530000063410.a #32	ENSGT00390000016551 #33	ENSGT00940000161234 #34	ENSGT00940000157597 #35	ENSGT00940000153899.b.b #36	ENSGT00940000155345 #37
Myomorpha	ANCESTRAL SPECIES	24					ENSGT00390000012248 #11	ENSGT00940000157885 #12	ENSGT00390000004284 #13	ENSGT00940000156530.c #14	ENSGT00390000018052 #15	ENSGT00950000183091.A.b #16	ENSGT00390000015405 #17	ENSGT00390000009597 #18	ENSGT00940000156327 #19	ENSGT00940000156841 #20	ENSGT00940000154556 #21	ENSGT00940000154958 #22	ENSGT00810000125473.A #23	ENSGT00940000157081 #24	ENSGT00530000063867.b #25	ENSGT00940000154186.a #26	ENSGT00390000001858 #27	ENSGT00940000155337 #28	ENSGT00950000183050.b.b.a #29	ENSGT00390000000583 #30	ENSGT00940000153464.B #31	ENSGT00530000063410.a #32	ENSGT00390000016551 #33	ENSGT00940000161234 #34	ENSGT00940000157597 #35	ENSGT00940000153899.b.b #36	ENSGT00940000155345 #37
Muroidea	ANCESTRAL SPECIES	21					ENSGT00390000012248 #11	ENSGT00940000157885 #12	ENSGT00390000004284 #13	ENSGT00940000156530.c #14	ENSGT00390000018052 #15	ENSGT00950000183091.A.b #16	ENSGT00390000015405 #17	ENSGT00390000009597 #18	ENSGT00940000156327 #19	ENSGT00940000156841 #20	ENSGT00940000154556 #21	ENSGT00940000154958 #22	ENSGT00810000125473.A #23	ENSGT00940000157081 #24	ENSGT00530000063867.b #25	ENSGT00940000154186.a #26	ENSGT00390000001858 #27	ENSGT00940000155337 #28	ENSGT00950000183050.b.b.a #29	ENSGT00390000000583 #30	ENSGT00940000153464.B #31	ENSGT00530000063410.a #32	ENSGT00390000016551 #33	ENSGT00940000161234 #34	ENSGT00940000157597 #35	ENSGT00940000153899.b.b #36	ENSGT00940000155345 #37
Muroidea_A	ANCESTRAL SPECIES	13	ENSGT00530000063608.A	ENSGT00940000160556 #7	ENSGT00390000001319	ENSGT00940000155450 #10	ENSGT00390000012248 #11	ENSGT00940000157885 #12	ENSGT00390000004284 #13	ENSGT00940000156530.c #14	ENSGT00390000018052 #15	ENSGT00950000183091.A.b #16	ENSGT00390000015405 #17	ENSGT00390000009597 #18	ENSGT00940000156327 #19	ENSGT00940000156841 #20	ENSGT00940000154556 #21	ENSGT00940000154958 #22	ENSGT00810000125473.A #23	ENSGT00940000157081 #24	ENSGT00530000063867.b #25	ENSGT00940000154186.a #26	ENSGT00390000001858 #27	ENSGT00940000155337 #28	ENSGT00950000183050.b.b.a #29	ENSGT00390000000583 #30	ENSGT00940000153464.B #31	ENSGT00530000063410.a #32	ENSGT00390000016551 #33	ENSGT00940000161234 #34	ENSGT00940000157597 #35	ENSGT00940000153899.b.b #36	ENSGT00940000155345 #37
Cricetidae	ANCESTRAL SPECIES	14	ENSGT00530000063608.A	ENSGT00940000160556 #7	ENSGT00390000001319	ENSGT00940000155450 #10	ENSGT00390000012248 #11	ENSGT00940000157885 #12	ENSGT00390000004284 #13	ENSGT00940000156530.c #14	ENSGT00390000018052 #15	ENSGT00950000183091.A.b #16	ENSGT00390000015405 #17	ENSGT00390000009597 #18	ENSGT00940000156327 #19	ENSGT00940000156841 #20	ENSGT00940000154556 #21	ENSGT00940000154958 #22	ENSGT00810000125473.A #23	ENSGT00940000157081 #24	ENSGT00530000063867.b #25	ENSGT00940000154186.a #26	ENSGT00390000001858 #27	ENSGT00940000155337 #28	ENSGT00950000183050.b.b.a #29	ENSGT00390000000583 #30	ENSGT00940000153464.B #31	ENSGT00530000063410.a #32	ENSGT00390000016551 #33	ENSGT00940000161234 #34	ENSGT00940000157597 #35	ENSGT00940000153899.b.b #36	ENSGT00940000155345 #37
Cricetidae_B	ANCESTRAL SPECIES	9	ENSGT00530000063608.A	ENSGT00940000160556 #7	ENSGT00390000001319	ENSGT00940000155450 #10	ENSGT00390000012248 #11	ENSGT00940000157885 #12	ENSGT00390000004284 #13	ENSGT00940000156530.c #14	ENSGT00390000018052 #15	ENSGT00950000183091.A.b #16	ENSGT00390000015405 #17	ENSGT00390000009597 #18	ENSGT00940000156327 #19	ENSGT00940000156841 #20	ENSGT00940000154556 #21	ENSGT00940000154958 #22	ENSGT00810000125473.A #23	ENSGT00940000157081 #24	ENSGT00530000063867.b #25	ENSGT00940000154186.a #26	ENSGT00390000001858 #27	ENSGT00940000155337 #28	ENSGT00950000183050.b.b.a #29	ENSGT00390000000583 #30	ENSGT00940000153464.B #31	ENSGT00530000063410.a #32	ENSGT00390000016551 #33	ENSGT00940000161234 #34	ENSGT00940000157597 #35	ENSGT00940000153899.b.b #36	ENSGT00940000155345 #37
Prairie vole	MODERN SPECIES	92	Vstm2a (ENSMOCG00000004039) #7	ENSMOCG00000001784 #8	ENSMOCG00000004092 #9	Egfr (ENSMOCG00000000900) #10	Fbxo48 (ENSMOCG00000015915) #11	Plek (ENSMOCG00000018168) #12	Cnrip1 (ENSMOCG00000004432) #13	Ppp3r1 (ENSMOCG00000012867) #14	Pno1 (ENSMOCG00000017268) #15	Dnaaf10 (ENSMOCG00000000313) #16	C1d (ENSMOCG00000010860) #17	Etaa1 (ENSMOCG00000018537) #18	Meis1 (ENSMOCG00000016359) #19	Spred2 (ENSMOCG00000014005) #20	Actr2 (ENSMOCG00000008248) #21	Rab1a (ENSMOCG00000017022) #22	Cep68 (ENSMOCG00000003444) #23	Slc1a4 (ENSMOCG00000001173) #24	Sertad2 (ENSMOCG00000002173) #25	Aftph (ENSMOCG00000015081) #26	ENSMOCG00000003932 #27	Gm5065 (ENSMOCG00000014300) #28	Peli1 (ENSMOCG00000016437) #29	Vps54 (ENSMOCG00000009563) #30	Ugp2 (ENSMOCG00000009715) #31	Mdh1 (ENSMOCG00000015448) #32	Wdpcp (ENSMOCG00000003579) #33	Otx1 (ENSMOCG00000014191) #34	Ehbp1 (ENSMOCG00000007287) #35	Tmem17 (ENSMOCG00000015494) #36	B3gnt2 (ENSMOCG00000000086) #37
Northern American deer mouse	MODERN SPECIES	1	Egfr (ENSPEMG00000012745) #10	Fbxo48 (ENSPEMG00000023069) #11	Plek (ENSPEMG00000022796) #12	Cnrip1 (ENSPEMG00000031287) #13	Ppp3r1 (ENSPEMG00000021806) #14	Pno1 (ENSPEMG00000022989) #15	Dnaaf10 (ENSPEMG00000022118) #16	ENSPEMG00000026465 #17	Etaa1 (ENSPEMG00000011918) #18	Meis1 (ENSPEMG00000008113) #19	ENSPEMG00000012914	ENSPEMG00000028236	Spred2 (ENSPEMG00000029042) #20	Actr2 (ENSPEMG00000015727) #21	ENSPEMG00000025517	Rab1a (ENSPEMG00000009340) #22	Cep68 (ENSPEMG00000002161) #23	Slc1a4 (ENSPEMG00000018063) #24	ENSPEMG00000016241	Sertad2 (ENSPEMG00000027852) #25	Aftph (ENSPEMG00000010156) #26	ENSPEMG00000015267 #28	Peli1 (ENSPEMG00000030617) #29	Vps54 (ENSPEMG00000012405) #30	Ugp2 (ENSPEMG00000010268) #31	Mdh1 (ENSPEMG00000007456) #32	Wdpcp (ENSPEMG00000016341) #33	Otx1 (ENSPEMG00000027636) #34	Ehbp1 (ENSPEMG00000014061) #35	Tmem17 (ENSPEMG00000012666) #36	ENSPEMG00000029232
Cricetinae	ANCESTRAL SPECIES	37	ENSGT00530000063608.A	ENSGT00940000160556 #7	ENSGT00390000001319	ENSGT00940000155450 #10	ENSGT00390000012248 #11	ENSGT00940000157885 #12	ENSGT00390000004284 #13	ENSGT00940000156530.c #14	ENSGT00390000018052 #15	ENSGT00950000183091.A.b #16	ENSGT00390000015405 #17	ENSGT00390000009597 #18	ENSGT00940000156327 #19	ENSGT00940000156841 #20	ENSGT00940000154556 #21	ENSGT00940000154958 #22	ENSGT00810000125473.A #23	ENSGT00940000157081 #24	ENSGT00530000063867.b #25	ENSGT00940000154186.a #26	ENSGT00390000001858 #27	ENSGT00940000155337 #28	ENSGT00950000183050.b.b.a #29	ENSGT00390000000583 #30	ENSGT00940000153464.B #31	ENSGT00530000063410.a #32	ENSGT00390000016551 #33	ENSGT00940000161234 #34	ENSGT00940000157597 #35	ENSGT00940000153899.b.b #36	ENSGT00940000155345 #37
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	121	ENSCGRG00001016899	Vstm2a (ENSCGRG00001018623) #7	ENSCGRG00001010828	Egfr (ENSCGRG00001020721) #10	Fbxo48 (ENSCGRG00001017787) #11	Plek (ENSCGRG00001023663) #12	Cnrip1 (ENSCGRG00001014944) #13	Ppp3r1 (ENSCGRG00001020769) #14	ENSCGRG00001007472 #15	ENSCGRG00001017610 #16	C1d (ENSCGRG00001023376) #17	Etaa1 (ENSCGRG00001020354) #18	Meis1 (ENSCGRG00001009447) #19	Spred2 (ENSCGRG00001015924) #20	ENSCGRG00001017243 #21	ENSCGRG00001012691 #22	Cep68 (ENSCGRG00001014327) #23	Slc1a4 (ENSCGRG00001017715) #24	ENSCGRG00001005474	Sertad2 (ENSCGRG00001009657) #25	Aftph (ENSCGRG00001016162) #26	ENSCGRG00001009126 #27	Gm5065 (ENSCGRG00001013868) #28	Peli1 (ENSCGRG00001021958) #29	Vps54 (ENSCGRG00001009286) #30	UGP2 (ENSCGRG00001012845) #31	Mdh1 (ENSCGRG00001021102) #32	ENSCGRG00001023990	Wdpcp (ENSCGRG00001012886) #33	Otx1 (ENSCGRG00001017328) #34	Ehbp1 (ENSCGRG00001022633) #35
Chinese hamster chok1gshd	MODERN SPECIES	16	Cited1 (ENSCGRG00001022122)	Hdac8 (ENSCGRG00001022455)	Phka1 (ENSCGRG00001020129)	ENSCGRG00001024855	Dmrtc1a (ENSCGRG00001018624)	ENSCGRG00001023387	Nap1l2 (ENSCGRG00001003632)	Eif2s3y (ENSCGRG00001016219)	ENSCGRG00001015812	ENSCGRG00001007129	ENSCGRG00001012385	Cdx4 (ENSCGRG00001020397)	ENSCGRG00001012274	Chic1 (ENSCGRG00001011931)	Tsx (ENSCGRG00001005790)	ENSCGRG00001004584 #22	Zcchc13 (ENSCGRG00001009786)	ENSCGRG00001000809	Slc16a2 (ENSCGRG00001001787)	ENSCGRG00001024219	Rlim (ENSCGRG00001019959)	Nexmif (ENSCGRG00001017017)	Abcb7 (ENSCGRG00001016748)	Uprt (ENSCGRG00001001968)	Zdhhc15 (ENSCGRG00001017482)	Magee2 (ENSCGRG00001009574)	Pbdc1 (ENSCGRG00001022880)	Magee1 (ENSCGRG00001014880)	Fgf16 (ENSCGRG00001020173)	Atrx (ENSCGRG00001010011)	Magt1 (ENSCGRG00001023814)
Golden Hamster	MODERN SPECIES	639	Grik2 (ENSMAUG00000012525)	Ascc3 (ENSMAUG00000018304)	Sim1 (ENSMAUG00000021356)	Egfr (ENSMAUG00000000581) #10	Fbxo48 (ENSMAUG00000020533) #11	Plek (ENSMAUG00000011299) #12	Cnrip1 (ENSMAUG00000019592) #13	Ppp3r1 (ENSMAUG00000014614) #14	Pno1 (ENSMAUG00000014995) #15	Dnaaf10 (ENSMAUG00000011603) #16	C1d (ENSMAUG00000008974) #17	Etaa1 (ENSMAUG00000010594) #18	Meis1 (ENSMAUG00000001130) #19	Spred2 (ENSMAUG00000013657) #20	Actr2 (ENSMAUG00000008458) #21	Rab1a (ENSMAUG00000012156) #22	Cep68 (ENSMAUG00000014820) #23	Slc1a4 (ENSMAUG00000019775) #24	Sertad2 (ENSMAUG00000004242) #25	Aftph (ENSMAUG00000016557) #26	ENSMAUG00000015033 #28	Peli1 (ENSMAUG00000012937) #29	Vps54 (ENSMAUG00000010788) #30	ENSMAUG00000012689 #31	Mdh1 (ENSMAUG00000018086) #32	ENSMAUG00000012018	Wdpcp (ENSMAUG00000011349) #33	Otx1 (ENSMAUG00000019114) #34	Ehbp1 (ENSMAUG00000000935) #35	Tmem17 (ENSMAUG00000003448) #36	B3gnt2 (ENSMAUG00000002963) #37
Murinae	ANCESTRAL SPECIES	12	ENSGT00530000063608.A	ENSGT00940000160556 #7	ENSGT00390000001319	ENSGT00940000155450 #10	ENSGT00390000012248 #11	ENSGT00940000157885 #12	ENSGT00390000004284 #13	ENSGT00940000156530.c #14	ENSGT00390000018052.s #15	ENSGT00950000183091.A.b #16	ENSGT00390000015405 #17	ENSGT00390000009597 #18	ENSGT00940000156327 #19	ENSGT00940000156841 #20	ENSGT00940000154556 #21	ENSGT00940000154958 #22	ENSGT00810000125473.A #23	ENSGT00940000157081 #24	ENSGT00530000063867.b #25	ENSGT00940000154186.a #26	ENSGT00940000155337 #28	ENSGT00950000183050.b.b.a #29	ENSGT00390000000583 #30	ENSGT00940000153464.B #31	ENSGT00530000063410.a #32	ENSGT00390000016551 #33	ENSGT00940000161234 #34	ENSGT00940000157597 #35	ENSGT00940000153899.b.b #36	ENSGT00940000155345 #37	ENSGT00950000183152.A
Mus	ANCESTRAL SPECIES	14	ENSGT00530000063608.A	ENSGT00940000160556 #7	ENSGT00390000001319	ENSGT00940000155450 #10	ENSGT00390000012248 #11	ENSGT00940000157885 #12	ENSGT00390000004284 #13	ENSGT00940000156530.c #14	ENSGT00390000018052.s #15	ENSGT00950000183091.A.b #16	ENSGT00390000015405 #17	ENSGT00390000009597 #18	ENSGT00940000156327 #19	ENSGT00940000156841 #20	ENSGT00940000154556 #21	ENSGT00940000154958 #22	ENSGT00810000125473.A #23	ENSGT00940000157081 #24	ENSGT00530000063867.b #25	ENSGT00940000154186.a #26	ENSGT00940000155337 #28	ENSGT00950000183050.b.b.a #29	ENSGT00390000000583 #30	ENSGT00940000153464.B #31	ENSGT00530000063410.a #32	ENSGT00390000016551 #33	ENSGT00940000161234 #34	ENSGT00940000157597 #35	ENSGT00940000153899.b.b #36	ENSGT00940000155345 #37	ENSGT00950000183152.A
Mus_A	ANCESTRAL SPECIES	2	ENSGT00530000063608.A	ENSGT00940000160556 #7	ENSGT00390000001319.cb	ENSGT00940000155450 #10	ENSGT00390000012248 #11	ENSGT00940000157885 #12	ENSGT00390000004284 #13	ENSGT00940000156530.c #14	ENSGT00390000018052.s #15	ENSGT00950000183091.A.b #16	ENSGT00390000015405 #17	ENSGT00390000009597 #18	ENSGT00940000156327 #19	ENSGT00940000156841 #20	ENSGT00940000154556 #21	ENSGT00940000154958 #22	ENSGT00810000125473.A #23	ENSGT00940000157081 #24	ENSGT00530000063867.b #25	ENSGT00940000154186.a #26	ENSGT00940000155337 #28	ENSGT00950000183050.b.b.a #29	ENSGT00390000000583 #30	ENSGT00940000153464.B #31	ENSGT00530000063410.a #32	ENSGT00390000016551 #33	ENSGT00940000161234 #34	ENSGT00940000157597 #35	ENSGT00940000153899.b.b #36	ENSGT00940000155345 #37	ENSGT00950000183152.A
Mus_B	ANCESTRAL SPECIES	2	ENSGT00530000063608.A	ENSGT00940000160556 #7	ENSGT00390000001319.cb	ENSGT00940000155450 #10	ENSGT00390000012248 #11	ENSGT00940000157885 #12	ENSGT00390000004284 #13	ENSGT00940000156530.c #14	ENSGT00390000018052.s #15	ENSGT00950000183091.A.b #16	ENSGT00390000015405 #17	ENSGT00390000009597 #18	ENSGT00940000156327 #19	ENSGT00940000156841 #20	ENSGT00940000154556 #21	ENSGT00940000154958 #22	ENSGT00810000125473.A #23	ENSGT00940000157081 #24	ENSGT00530000063867.b #25	ENSGT00940000154186.a #26	ENSGT00940000155337 #28	ENSGT00950000183050.b.b.a #29	ENSGT00390000000583 #30	ENSGT00940000153464.B #31	ENSGT00530000063410.a #32	ENSGT00390000016551 #33	ENSGT00940000161234 #34	ENSGT00940000157597 #35	ENSGT00940000153899.b.b #36	ENSGT00940000155345 #37	ENSGT00950000183152.A
Mus_C	ANCESTRAL SPECIES	3	ENSGT00530000063608.A	ENSGT00940000160556 #7	ENSGT00390000001319.cb	ENSGT00940000155450 #10	ENSGT00390000012248 #11	ENSGT00940000157885 #12	ENSGT00390000004284 #13	ENSGT00940000156530.c #14	ENSGT00390000018052.s #15	ENSGT00950000183091.A.b #16	ENSGT00390000015405 #17	ENSGT00390000009597 #18	ENSGT00940000156327 #19	ENSGT00940000156841 #20	ENSGT00940000154556 #21	ENSGT00940000154958 #22	ENSGT00810000125473.A #23	ENSGT00940000157081 #24	ENSGT00530000063867.b #25	ENSGT00940000154186.a #26	ENSGT00940000155337 #28	ENSGT00950000183050.b.b.a #29	ENSGT00390000000583 #30	ENSGT00940000153464.B #31	ENSGT00530000063410.a #32	ENSGT00390000016551 #33	ENSGT00940000161234 #34	ENSGT00940000157597 #35	ENSGT00940000153899.b.b #36	ENSGT00940000155345 #37	ENSGT00950000183152.A
spretus	MODERN SPECIES	2	MGP_SPRETEiJ_G0016943 #7	Sec61g (MGP_SPRETEiJ_G0016944)	Egfr (MGP_SPRETEiJ_G0016945) #10	Fbxo48 (MGP_SPRETEiJ_G0016946) #11	Plek (MGP_SPRETEiJ_G0016947) #12	MGP_SPRETEiJ_G0016948 #13	Ppp3r1 (MGP_SPRETEiJ_G0016949) #14	Dnaaf10 (MGP_SPRETEiJ_G0016950) #16	Pno1 (MGP_SPRETEiJ_G0016951) #15	C1d (MGP_SPRETEiJ_G0016952) #17	Etaa1 (MGP_SPRETEiJ_G0016953) #18	Meis1 (MGP_SPRETEiJ_G0016954) #19	Asb12 (MGP_SPRETEiJ_G0016955)	Spred2 (MGP_SPRETEiJ_G0016956) #20	Actr2 (MGP_SPRETEiJ_G0016957) #21	Rab1a (MGP_SPRETEiJ_G0016958) #22	Cep68 (MGP_SPRETEiJ_G0016959) #23	Slc1a4 (MGP_SPRETEiJ_G0016960) #24	Sertad2 (MGP_SPRETEiJ_G0016961) #25	Aftph (MGP_SPRETEiJ_G0016962) #26	Lgalsl (MGP_SPRETEiJ_G0016963) #28	Peli1 (MGP_SPRETEiJ_G0016964) #29	Vps54 (MGP_SPRETEiJ_G0016965) #30	Ugp2 (MGP_SPRETEiJ_G0016966) #31	Mdh1 (MGP_SPRETEiJ_G0016967) #32	Wdpcp (MGP_SPRETEiJ_G0016968) #33	Otx1 (MGP_SPRETEiJ_G0016969) #34	Ehbp1 (MGP_SPRETEiJ_G0016970) #35	Tmem17 (MGP_SPRETEiJ_G0016971) #36	MGP_SPRETEiJ_G0016972	B3gnt2 (MGP_SPRETEiJ_G0016973) #37
Steppe mouse	MODERN SPECIES	3178											Meis1 (ENSMSIG00000012755) #19	ENSMSIG00000013123	ENSMSIG00000013132	Spred2 (ENSMSIG00000013142) #20	Actr2 (ENSMSIG00000013218) #21	Rab1a (ENSMSIG00000013288) #22	Cep68 (ENSMSIG00000013342) #23	Slc1a4 (ENSMSIG00000013384) #24	ENSMSIG00000013417	Sertad2 (ENSMSIG00000013434) #25	Aftph (ENSMSIG00000013440) #26	ENSMSIG00000013501
Mouse	MODERN SPECIES	2	Pom121l12 (ENSMUSG00000084135)	Vstm2a (ENSMUSG00000048834) #7	Sec61g (ENSMUSG00000078974)	Egfr (ENSMUSG00000020122) #10	Fbxo48 (ENSMUSG00000044966) #11	Plek (ENSMUSG00000020120) #12	Cnrip1 (ENSMUSG00000044629) #13	Ppp3r1 (ENSMUSG00000033953) #14	Dnaaf10 (ENSMUSG00000078970) #16	Pno1 (ENSMUSG00000020116) #15	C1d (ENSMUSG00000000581) #17	Etaa1 (ENSMUSG00000016984) #18	Meis1 (ENSMUSG00000020160) #19	Spred2 (ENSMUSG00000045671) #20	Actr2 (ENSMUSG00000020152) #21	Rab1a (ENSMUSG00000020149) #22	Cep68 (ENSMUSG00000044066) #23	Slc1a4 (ENSMUSG00000020142) #24	Sertad2 (ENSMUSG00000049800) #25	Aftph (ENSMUSG00000049659) #26	Lgalsl (ENSMUSG00000042363) #28	Peli1 (ENSMUSG00000020134) #29	Vps54 (ENSMUSG00000020128) #30	Ugp2 (ENSMUSG00000001891) #31	Mdh1 (ENSMUSG00000020321) #32	Wdpcp (ENSMUSG00000020319) #33	Otx1 (ENSMUSG00000005917) #34	Ehbp1 (ENSMUSG00000042302) #35	Tmem17 (ENSMUSG00000049904) #36	B3gnt2 (ENSMUSG00000051650) #37	Commd1b (ENSMUSG00000098650)
Ryukyu mouse	MODERN SPECIES	2	Cobl (MGP_CAROLIEiJ_G0016100)	MGP_CAROLIEiJ_G0016101 #7	Sec61g (MGP_CAROLIEiJ_G0016102)	Egfr (MGP_CAROLIEiJ_G0016103) #10	Fbxo48 (MGP_CAROLIEiJ_G0016104) #11	Plek (MGP_CAROLIEiJ_G0016105) #12	Cnrip1 (MGP_CAROLIEiJ_G0016106) #13	Ppp3r1 (MGP_CAROLIEiJ_G0016107) #14	Dnaaf10 (MGP_CAROLIEiJ_G0016108) #16	Pno1 (MGP_CAROLIEiJ_G0016109) #15	C1d (MGP_CAROLIEiJ_G0016110) #17	Etaa1 (MGP_CAROLIEiJ_G0016111) #18	Meis1 (MGP_CAROLIEiJ_G0016112) #19	Spred2 (MGP_CAROLIEiJ_G0016113) #20	Actr2 (MGP_CAROLIEiJ_G0016114) #21	Rab1a (MGP_CAROLIEiJ_G0016115) #22	Cep68 (MGP_CAROLIEiJ_G0016116) #23	Slc1a4 (MGP_CAROLIEiJ_G0016117) #24	Sertad2 (MGP_CAROLIEiJ_G0016118) #25	Aftph (MGP_CAROLIEiJ_G0016119) #26	Gm5065 (MGP_CAROLIEiJ_G0016120) #28	Peli1 (MGP_CAROLIEiJ_G0016121) #29	Vps54 (MGP_CAROLIEiJ_G0016122) #30	Ugp2 (MGP_CAROLIEiJ_G0016123) #31	Mdh1 (MGP_CAROLIEiJ_G0016124) #32	Wdpcp (MGP_CAROLIEiJ_G0016125) #33	Otx1 (MGP_CAROLIEiJ_G0016126) #34	Ehbp1 (MGP_CAROLIEiJ_G0016127) #35	Tmem17 (MGP_CAROLIEiJ_G0016128) #36	MGP_CAROLIEiJ_G0016129	MGP_CAROLIEiJ_G0016130
Shrew mouse	MODERN SPECIES	4	Cobl (MGP_PahariEiJ_G0016791)	MGP_PahariEiJ_G0016790 #7	Sec61g (MGP_PahariEiJ_G0016789)	Egfr (MGP_PahariEiJ_G0016788) #10	Fbxo48 (MGP_PahariEiJ_G0016787) #11	Plek (MGP_PahariEiJ_G0016786) #12	MGP_PahariEiJ_G0016785 #13	Ppp3r1 (MGP_PahariEiJ_G0016784) #14	Pno1 (MGP_PahariEiJ_G0016783) #15	Dnaaf10 (MGP_PahariEiJ_G0016782) #16	C1d (MGP_PahariEiJ_G0016781) #17	Etaa1 (MGP_PahariEiJ_G0016780) #18	Meis1 (MGP_PahariEiJ_G0016779) #19	Spred2 (MGP_PahariEiJ_G0016778) #20	Actr2 (MGP_PahariEiJ_G0016777) #21	Rab1a (MGP_PahariEiJ_G0016776) #22	Cep68 (MGP_PahariEiJ_G0016775) #23	Slc1a4 (MGP_PahariEiJ_G0016774) #24	Sertad2 (MGP_PahariEiJ_G0016773) #25	Aftph (MGP_PahariEiJ_G0016772) #26	Lgalsl (MGP_PahariEiJ_G0016771) #28	MGP_PahariEiJ_G0016770 #28	Peli1 (MGP_PahariEiJ_G0016769) #29	Vps54 (MGP_PahariEiJ_G0016768) #30	Ugp2 (MGP_PahariEiJ_G0016767) #31	Mdh1 (MGP_PahariEiJ_G0016766) #32	MGP_PahariEiJ_G0016765 #33	Otx1 (MGP_PahariEiJ_G0016764) #34	Ehbp1 (MGP_PahariEiJ_G0016763) #35	Tmem17 (MGP_PahariEiJ_G0016762) #36	MGP_PahariEiJ_G0016761
Rat	DUPLICATION
Rat	DUPLICATION
Rat	DUPLICATION
Rat	DUPLICATION
Rat	MODERN SPECIES		Cfap90 (ENSRNOG00000047406)	Fastkd3 (ENSRNOG00000027422)	Mtrr (ENSRNOG00000017826)	Zfp455l1 (ENSRNOG00000042308)	ENSRNOG00000068953	RGD1566325 (ENSRNOG00000017963)	LOC102547287 (ENSRNOG00000016462)	LOC102549842 (ENSRNOG00000049259)	Zfp748 (ENSRNOG00000069921)	Spry3-ps1 (ENSRNOG00000064505)	LOC102551340 (ENSRNOG00000047145)	Zfp273l-ps1 (ENSRNOG00000046353)	ENSRNOG00000068667	ENSRNOG00000066169	ENSRNOG00000067171 #22	ENSRNOG00000070839 #22	ENSRNOG00000068976 #22	ENSRNOG00000063413	ENSRNOG00000067926	ENSRNOG00000069813	ENSRNOG00000067477 #22	ENSRNOG00000070838 #22	AABR07001348.1 (ENSRNOG00000023081)	Ppp1r14c (ENSRNOG00000016368)	Iyd (ENSRNOG00000016286)	Plekhg1 (ENSRNOG00000016011)	Mthfd1l (ENSRNOG00000019582)	Akap12 (ENSRNOG00000019549)	Zbtb2 (ENSRNOG00000019544)	Rmnd1 (ENSRNOG00000019501)	Armt1 (ENSRNOG00000019489)
Rat	MODERN SPECIES		Adcy2 (ENSRNOG00000032150)	Cfap90 (ENSRNOG00000047406)	Fastkd3 (ENSRNOG00000027422)	Mtrr (ENSRNOG00000017826)	Zfp455l1 (ENSRNOG00000042308)	ENSRNOG00000068953	RGD1566325 (ENSRNOG00000017963)	LOC102547287 (ENSRNOG00000016462)	LOC102549842 (ENSRNOG00000049259)	Zfp748 (ENSRNOG00000069921)	Spry3-ps1 (ENSRNOG00000064505)	LOC102551340 (ENSRNOG00000047145)	Zfp273l-ps1 (ENSRNOG00000046353)	ENSRNOG00000068667	ENSRNOG00000066169	ENSRNOG00000067171 #22	ENSRNOG00000070839 #22	ENSRNOG00000068976 #22	ENSRNOG00000063413	ENSRNOG00000067926	ENSRNOG00000069813	ENSRNOG00000067477 #22	ENSRNOG00000070838 #22	AABR07001348.1 (ENSRNOG00000023081)	Ppp1r14c (ENSRNOG00000016368)	Iyd (ENSRNOG00000016286)	Plekhg1 (ENSRNOG00000016011)	Mthfd1l (ENSRNOG00000019582)	Akap12 (ENSRNOG00000019549)	Zbtb2 (ENSRNOG00000019544)	Rmnd1 (ENSRNOG00000019501)
Rat	DUPLICATION
Rat	MODERN SPECIES		Fastkd3 (ENSRNOG00000027422)	Mtrr (ENSRNOG00000017826)	Zfp455l1 (ENSRNOG00000042308)	ENSRNOG00000068953	RGD1566325 (ENSRNOG00000017963)	LOC102547287 (ENSRNOG00000016462)	LOC102549842 (ENSRNOG00000049259)	Zfp748 (ENSRNOG00000069921)	Spry3-ps1 (ENSRNOG00000064505)	LOC102551340 (ENSRNOG00000047145)	Zfp273l-ps1 (ENSRNOG00000046353)	ENSRNOG00000068667	ENSRNOG00000066169	ENSRNOG00000067171 #22	ENSRNOG00000070839 #22	ENSRNOG00000068976 #22	ENSRNOG00000063413	ENSRNOG00000067926	ENSRNOG00000069813	ENSRNOG00000067477 #22	ENSRNOG00000070838 #22	AABR07001348.1 (ENSRNOG00000023081)	Ppp1r14c (ENSRNOG00000016368)	Iyd (ENSRNOG00000016286)	Plekhg1 (ENSRNOG00000016011)	Mthfd1l (ENSRNOG00000019582)	Akap12 (ENSRNOG00000019549)	Zbtb2 (ENSRNOG00000019544)	Rmnd1 (ENSRNOG00000019501)	Armt1 (ENSRNOG00000019489)	Ccdc170 (ENSRNOG00000024280)
Rat	MODERN SPECIES		RGD1566325 (ENSRNOG00000017963)	LOC102547287 (ENSRNOG00000016462)	LOC102549842 (ENSRNOG00000049259)	Zfp748 (ENSRNOG00000069921)	Spry3-ps1 (ENSRNOG00000064505)	LOC102551340 (ENSRNOG00000047145)	Zfp273l-ps1 (ENSRNOG00000046353)	ENSRNOG00000068667	ENSRNOG00000066169	ENSRNOG00000067171 #22	ENSRNOG00000070839 #22	ENSRNOG00000068976 #22	ENSRNOG00000063413	ENSRNOG00000067926	ENSRNOG00000069813	ENSRNOG00000067477 #22	ENSRNOG00000070838 #22	AABR07001348.1 (ENSRNOG00000023081)	Ppp1r14c (ENSRNOG00000016368)	Iyd (ENSRNOG00000016286)	Plekhg1 (ENSRNOG00000016011)	Mthfd1l (ENSRNOG00000019582)	Akap12 (ENSRNOG00000019549)	Zbtb2 (ENSRNOG00000019544)	Rmnd1 (ENSRNOG00000019501)	Armt1 (ENSRNOG00000019489)	Ccdc170 (ENSRNOG00000024280)	Esr1 (ENSRNOG00000019358)	Syne1 (ENSRNOG00000018960)	Myct1 (ENSRNOG00000018858)	Vip (ENSRNOG00000018808)
Rat	MODERN SPECIES		Fbxo5 (ENSRNOG00000024077)	Vip (ENSRNOG00000018808)	Myct1 (ENSRNOG00000018858)	Syne1 (ENSRNOG00000018960)	Esr1 (ENSRNOG00000019358)	Ccdc170 (ENSRNOG00000024280)	Armt1 (ENSRNOG00000019489)	Rmnd1 (ENSRNOG00000019501)	Zbtb2 (ENSRNOG00000019544)	Akap12 (ENSRNOG00000019549)	Mthfd1l (ENSRNOG00000019582)	Plekhg1 (ENSRNOG00000016011)	Iyd (ENSRNOG00000016286)	Ppp1r14c (ENSRNOG00000016368)	AABR07001348.1 (ENSRNOG00000023081)	ENSRNOG00000070838 #22	ENSRNOG00000067477 #22	ENSRNOG00000069813	ENSRNOG00000067926	ENSRNOG00000063413	ENSRNOG00000068976 #22	ENSRNOG00000070839 #22	ENSRNOG00000067171 #22	ENSRNOG00000066169	ENSRNOG00000068667	Zfp273l-ps1 (ENSRNOG00000046353)	LOC102551340 (ENSRNOG00000047145)	Spry3-ps1 (ENSRNOG00000064505)	Zfp748 (ENSRNOG00000069921)	LOC102549842 (ENSRNOG00000049259)	LOC102547287 (ENSRNOG00000016462)
Rat	MODERN SPECIES	5	Sec61g (ENSRNOG00000005203)	Egfr (ENSRNOG00000004332) #10	Fbxo48 (ENSRNOG00000023026) #11	Plek (ENSRNOG00000005214) #12	Cnrip1 (ENSRNOG00000005326) #13	Pno1 (ENSRNOG00000005524) #15	C1d (ENSRNOG00000005982) #17	Hnrnpk-ps1 (ENSRNOG00000063529)	Etaa1l1 (ENSRNOG00000006185) #18	Meis1 (ENSRNOG00000004606) #19	Spred2 (ENSRNOG00000004888) #20	Actr2 (ENSRNOG00000004959) #21	AABR07016566.1 (ENSRNOG00000051648)	ENSRNOG00000070133	Rpl38 (ENSRNOG00000033686)	Rab1a (ENSRNOG00000004992) #22	Cep68 (ENSRNOG00000027282) #23	Slc1a4 (ENSRNOG00000005248) #24	Sertad2 (ENSRNOG00000005393) #25	Aftph (ENSRNOG00000005411) #26	LOC108352861 (ENSRNOG00000029052)	Lgalsl (ENSRNOG00000005464) #28	LOC108352809 (ENSRNOG00000042277)	Peli1 (ENSRNOG00000006329) #29	Vps54 (ENSRNOG00000007125) #30	Ugp2 (ENSRNOG00000008079) #31	Mdh1 (ENSRNOG00000008103) #32	Wdpcp (ENSRNOG00000054331) #33	ENSRNOG00000065408	Otx1 (ENSRNOG00000065081) #34	Ehbp1 (ENSRNOG00000008917) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	1542																Rab1a (ENSNGAG00000005838) #22	Cep68 (ENSNGAG00000024137) #23	Slc1a4 (ENSNGAG00000022015) #24	Sertad2 (ENSNGAG00000019290) #25	ENSNGAG00000010686 #27	Aftph (ENSNGAG00000022259) #26	ENSNGAG00000017298 #28	Peli1 (ENSNGAG00000014256) #29	Vps54 (ENSNGAG00000019724) #30	Ugp2 (ENSNGAG00000014716) #31	Mdh1 (ENSNGAG00000022959) #32	ENSNGAG00000016412	Wdpcp (ENSNGAG00000022039) #33	Otx1 (ENSNGAG00000023167) #34	Ehbp1 (ENSNGAG00000022543) #35
Lesser Egyptian jerboa	MODERN SPECIES	74	Iah1 (ENSJJAG00000015466)	Adam17 (ENSJJAG00000020057)	Ywhaq (ENSJJAG00000008194)	ENSJJAG00000011210 #11	Plek (ENSJJAG00000005757) #12	Cnrip1 (ENSJJAG00000016204) #13	Ppp3r1 (ENSJJAG00000016869) #14	Pno1 (ENSJJAG00000022862) #15	Dnaaf10 (ENSJJAG00000019935) #16	ENSJJAG00000023186 #17	ENSJJAG00000021064	ENSJJAG00000011226 #18	Meis1 (ENSJJAG00000015459) #19	Spred2 (ENSJJAG00000020977) #20	Actr2 (ENSJJAG00000008642) #21	Rab1a (ENSJJAG00000014396) #22	Cep68 (ENSJJAG00000016421) #23	Slc1a4 (ENSJJAG00000002418) #24	Sertad2 (ENSJJAG00000015989) #25	ENSJJAG00000020384 #26	Gm5065 (ENSJJAG00000016772) #28	Peli1 (ENSJJAG00000000296) #29	Vps54 (ENSJJAG00000012401) #30	Ugp2 (ENSJJAG00000014432) #31	Mdh1 (ENSJJAG00000024369) #32	ENSJJAG00000014833 #33	ENSJJAG00000015148 #33	Otx1 (ENSJJAG00000011287) #34	Ehbp1 (ENSJJAG00000023917) #35	Tmem17 (ENSJJAG00000007029) #36	B3gnt2 (ENSJJAG00000007561) #37
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	382	Gkn3 (ENSDORG00000029528)	Bmp10 (ENSDORG00000012857)	Arhgap25 (ENSDORG00000012856)	ENSDORG00000012853	Aplf (ENSDORG00000011241)	Fbxo48 (ENSDORG00000011239) #11	Plek (ENSDORG00000029923) #12	Cnrip1 (ENSDORG00000025749) #13	Ppp3r1 (ENSDORG00000024931) #14	ENSDORG00000006867 #15	Dnaaf10 (ENSDORG00000006862) #16	C1d (ENSDORG00000003300) #17	Meis1 (ENSDORG00000008334) #19	Spred2 (ENSDORG00000012174) #20	Actr2 (ENSDORG00000001487) #21	ENSDORG00000028628 #22	Cep68 (ENSDORG00000002111) #23	Slc1a4 (ENSDORG00000002394) #24	Sertad2 (ENSDORG00000025954) #25	ENSDORG00000027058 #27	ENSDORG00000004159 #26	ENSDORG00000027919 #28	Peli1 (ENSDORG00000025404) #29	Vps54 (ENSDORG00000009782) #30	Ugp2 (ENSDORG00000013164) #31	Rasl2-9 (ENSDORG00000027038)	Mdh1 (ENSDORG00000000099) #32	ENSDORG00000009021	Wdpcp (ENSDORG00000003329) #33	Otx1 (ENSDORG00000024553) #34	ENSDORG00000023858
Kangaroo rat	MODERN SPECIES	338	Trpv1 (ENSDORG00000009857)	Shpk (ENSDORG00000013798)	Ctns (ENSDORG00000013799)	ENSDORG00000013801	Emc6 (ENSDORG00000013802)	ENSDORG00000013803	Ncbp3 (ENSDORG00000010141)	Camkk1 (ENSDORG00000002757)	P2rx1 (ENSDORG00000002759)	Atp2a3 (ENSDORG00000010345)	ENSDORG00000027978	Zzef1 (ENSDORG00000013546)	Ankfy1 (ENSDORG00000001111)	Ube2g1 (ENSDORG00000027019)	Spns2 (ENSDORG00000000440)	ENSDORG00000002112 #22	Smtnl2 (ENSDORG00000010818)	Fbxo39 (ENSDORG00000015547)	Med31 (ENSDORG00000012204)	Txndc17 (ENSDORG00000025800)	ENSDORG00000012202	Pitpnm3 (ENSDORG00000007558)	Aipl1 (ENSDORG00000029045)	Wscd1 (ENSDORG00000010220)	Derl2 (ENSDORG00000026480)	Dhx33 (ENSDORG00000014344)	ENSDORG00000029038	Rpain (ENSDORG00000007467)	Nup88 (ENSDORG00000007462)	Rabep1 (ENSDORG00000007460)	Scimp (ENSDORG00000028534)