Mus	ANCESTRAL SPECIES	14	ENSGT00530000063608.A	ENSGT00940000160556 #7	ENSGT00390000001319 #8	ENSGT00940000155450 #9	ENSGT00390000012248 #10	ENSGT00940000157885 #11	ENSGT00390000004284 #12	ENSGT00940000156530.c #13	ENSGT00390000018052.s #15	ENSGT00950000183091.A.b #14	ENSGT00390000015405 #16	ENSGT00390000009597 #17	ENSGT00940000156327 #18	ENSGT00940000156841 #20	ENSGT00940000154556 #21	ENSGT00940000154958 #22	ENSGT00810000125473.A #23	ENSGT00940000157081 #24	ENSGT00530000063867.b #25	ENSGT00940000154186.a #26	ENSGT00940000155337 #27	ENSGT00950000183050.b.b.a #28	ENSGT00390000000583 #29	ENSGT00940000153464.B #30	ENSGT00530000063410.a #31	ENSGT00390000016551 #32	ENSGT00940000161234 #33	ENSGT00940000157597 #34	ENSGT00940000153899.b.b #35	ENSGT00940000155345 #37	ENSGT00950000183152.A
Mus_A	ANCESTRAL SPECIES	2	ENSGT00530000063608.A	ENSGT00940000160556 #7	ENSGT00390000001319.cb #8	ENSGT00940000155450 #9	ENSGT00390000012248 #10	ENSGT00940000157885 #11	ENSGT00390000004284 #12	ENSGT00940000156530.c #13	ENSGT00390000018052.s #15	ENSGT00950000183091.A.b #14	ENSGT00390000015405 #16	ENSGT00390000009597 #17	ENSGT00940000156327 #18	ENSGT00940000156841 #20	ENSGT00940000154556 #21	ENSGT00940000154958 #22	ENSGT00810000125473.A #23	ENSGT00940000157081 #24	ENSGT00530000063867.b #25	ENSGT00940000154186.a #26	ENSGT00940000155337 #27	ENSGT00950000183050.b.b.a #28	ENSGT00390000000583 #29	ENSGT00940000153464.B #30	ENSGT00530000063410.a #31	ENSGT00390000016551 #32	ENSGT00940000161234 #33	ENSGT00940000157597 #34	ENSGT00940000153899.b.b #35	ENSGT00940000155345 #37	ENSGT00950000183152.A
Mus_B	ANCESTRAL SPECIES	2	ENSGT00530000063608.A	ENSGT00940000160556 #7	ENSGT00390000001319.cb #8	ENSGT00940000155450 #9	ENSGT00390000012248 #10	ENSGT00940000157885 #11	ENSGT00390000004284 #12	ENSGT00940000156530.c #13	ENSGT00390000018052.s #15	ENSGT00950000183091.A.b #14	ENSGT00390000015405 #16	ENSGT00390000009597 #17	ENSGT00940000156327 #18	ENSGT00940000156841 #20	ENSGT00940000154556 #21	ENSGT00940000154958 #22	ENSGT00810000125473.A #23	ENSGT00940000157081 #24	ENSGT00530000063867.b #25	ENSGT00940000154186.a #26	ENSGT00940000155337 #27	ENSGT00950000183050.b.b.a #28	ENSGT00390000000583 #29	ENSGT00940000153464.B #30	ENSGT00530000063410.a #31	ENSGT00390000016551 #32	ENSGT00940000161234 #33	ENSGT00940000157597 #34	ENSGT00940000153899.b.b #35	ENSGT00940000155345 #37	ENSGT00950000183152.A
Mus_C	ANCESTRAL SPECIES	3	ENSGT00530000063608.A	ENSGT00940000160556 #7	ENSGT00390000001319.cb #8	ENSGT00940000155450 #9	ENSGT00390000012248 #10	ENSGT00940000157885 #11	ENSGT00390000004284 #12	ENSGT00940000156530.c #13	ENSGT00390000018052.s #15	ENSGT00950000183091.A.b #14	ENSGT00390000015405 #16	ENSGT00390000009597 #17	ENSGT00940000156327 #18	ENSGT00940000156841 #20	ENSGT00940000154556 #21	ENSGT00940000154958 #22	ENSGT00810000125473.A #23	ENSGT00940000157081 #24	ENSGT00530000063867.b #25	ENSGT00940000154186.a #26	ENSGT00940000155337 #27	ENSGT00950000183050.b.b.a #28	ENSGT00390000000583 #29	ENSGT00940000153464.B #30	ENSGT00530000063410.a #31	ENSGT00390000016551 #32	ENSGT00940000161234 #33	ENSGT00940000157597 #34	ENSGT00940000153899.b.b #35	ENSGT00940000155345 #37	ENSGT00950000183152.A
spretus	MODERN SPECIES	2	MGP_SPRETEiJ_G0016943 #7	Sec61g (MGP_SPRETEiJ_G0016944) #8	Egfr (MGP_SPRETEiJ_G0016945) #9	Fbxo48 (MGP_SPRETEiJ_G0016946) #10	Plek (MGP_SPRETEiJ_G0016947) #11	MGP_SPRETEiJ_G0016948 #12	Ppp3r1 (MGP_SPRETEiJ_G0016949) #13	Dnaaf10 (MGP_SPRETEiJ_G0016950) #14	Pno1 (MGP_SPRETEiJ_G0016951) #15	C1d (MGP_SPRETEiJ_G0016952) #16	Etaa1 (MGP_SPRETEiJ_G0016953) #17	Meis1 (MGP_SPRETEiJ_G0016954) #18	Asb12 (MGP_SPRETEiJ_G0016955) #19	Spred2 (MGP_SPRETEiJ_G0016956) #20	Actr2 (MGP_SPRETEiJ_G0016957) #21	Rab1a (MGP_SPRETEiJ_G0016958) #22	Cep68 (MGP_SPRETEiJ_G0016959) #23	Slc1a4 (MGP_SPRETEiJ_G0016960) #24	Sertad2 (MGP_SPRETEiJ_G0016961) #25	Aftph (MGP_SPRETEiJ_G0016962) #26	Lgalsl (MGP_SPRETEiJ_G0016963) #27	Peli1 (MGP_SPRETEiJ_G0016964) #28	Vps54 (MGP_SPRETEiJ_G0016965) #29	Ugp2 (MGP_SPRETEiJ_G0016966) #30	Mdh1 (MGP_SPRETEiJ_G0016967) #31	Wdpcp (MGP_SPRETEiJ_G0016968) #32	Otx1 (MGP_SPRETEiJ_G0016969) #33	Ehbp1 (MGP_SPRETEiJ_G0016970) #34	Tmem17 (MGP_SPRETEiJ_G0016971) #35	MGP_SPRETEiJ_G0016972 #36	B3gnt2 (MGP_SPRETEiJ_G0016973) #37
Steppe mouse	MODERN SPECIES	3178											Meis1 (ENSMSIG00000012755) #18	ENSMSIG00000013123	ENSMSIG00000013132	Spred2 (ENSMSIG00000013142) #20	Actr2 (ENSMSIG00000013218) #21	Rab1a (ENSMSIG00000013288) #22	Cep68 (ENSMSIG00000013342) #23	Slc1a4 (ENSMSIG00000013384) #24	ENSMSIG00000013417	Sertad2 (ENSMSIG00000013434) #25	Aftph (ENSMSIG00000013440) #26	ENSMSIG00000013501
Mouse	MODERN SPECIES	2	Pom121l12 (ENSMUSG00000084135)	Vstm2a (ENSMUSG00000048834) #7	Sec61g (ENSMUSG00000078974) #8	Egfr (ENSMUSG00000020122) #9	Fbxo48 (ENSMUSG00000044966) #10	Plek (ENSMUSG00000020120) #11	Cnrip1 (ENSMUSG00000044629) #12	Ppp3r1 (ENSMUSG00000033953) #13	Dnaaf10 (ENSMUSG00000078970) #14	Pno1 (ENSMUSG00000020116) #15	C1d (ENSMUSG00000000581) #16	Etaa1 (ENSMUSG00000016984) #17	Meis1 (ENSMUSG00000020160) #18	Spred2 (ENSMUSG00000045671) #20	Actr2 (ENSMUSG00000020152) #21	Rab1a (ENSMUSG00000020149) #22	Cep68 (ENSMUSG00000044066) #23	Slc1a4 (ENSMUSG00000020142) #24	Sertad2 (ENSMUSG00000049800) #25	Aftph (ENSMUSG00000049659) #26	Lgalsl (ENSMUSG00000042363) #27	Peli1 (ENSMUSG00000020134) #28	Vps54 (ENSMUSG00000020128) #29	Ugp2 (ENSMUSG00000001891) #30	Mdh1 (ENSMUSG00000020321) #31	Wdpcp (ENSMUSG00000020319) #32	Otx1 (ENSMUSG00000005917) #33	Ehbp1 (ENSMUSG00000042302) #34	Tmem17 (ENSMUSG00000049904) #35	B3gnt2 (ENSMUSG00000051650) #37	Commd1b (ENSMUSG00000098650)
Ryukyu mouse	MODERN SPECIES	2	Cobl (MGP_CAROLIEiJ_G0016100)	MGP_CAROLIEiJ_G0016101 #7	Sec61g (MGP_CAROLIEiJ_G0016102) #8	Egfr (MGP_CAROLIEiJ_G0016103) #9	Fbxo48 (MGP_CAROLIEiJ_G0016104) #10	Plek (MGP_CAROLIEiJ_G0016105) #11	Cnrip1 (MGP_CAROLIEiJ_G0016106) #12	Ppp3r1 (MGP_CAROLIEiJ_G0016107) #13	Dnaaf10 (MGP_CAROLIEiJ_G0016108) #14	Pno1 (MGP_CAROLIEiJ_G0016109) #15	C1d (MGP_CAROLIEiJ_G0016110) #16	Etaa1 (MGP_CAROLIEiJ_G0016111) #17	Meis1 (MGP_CAROLIEiJ_G0016112) #18	Spred2 (MGP_CAROLIEiJ_G0016113) #20	Actr2 (MGP_CAROLIEiJ_G0016114) #21	Rab1a (MGP_CAROLIEiJ_G0016115) #22	Cep68 (MGP_CAROLIEiJ_G0016116) #23	Slc1a4 (MGP_CAROLIEiJ_G0016117) #24	Sertad2 (MGP_CAROLIEiJ_G0016118) #25	Aftph (MGP_CAROLIEiJ_G0016119) #26	Gm5065 (MGP_CAROLIEiJ_G0016120) #27	Peli1 (MGP_CAROLIEiJ_G0016121) #28	Vps54 (MGP_CAROLIEiJ_G0016122) #29	Ugp2 (MGP_CAROLIEiJ_G0016123) #30	Mdh1 (MGP_CAROLIEiJ_G0016124) #31	Wdpcp (MGP_CAROLIEiJ_G0016125) #32	Otx1 (MGP_CAROLIEiJ_G0016126) #33	Ehbp1 (MGP_CAROLIEiJ_G0016127) #34	Tmem17 (MGP_CAROLIEiJ_G0016128) #35	MGP_CAROLIEiJ_G0016129 #36	MGP_CAROLIEiJ_G0016130
Shrew mouse	MODERN SPECIES	4	Cobl (MGP_PahariEiJ_G0016791)	MGP_PahariEiJ_G0016790 #7	Sec61g (MGP_PahariEiJ_G0016789) #8	Egfr (MGP_PahariEiJ_G0016788) #9	Fbxo48 (MGP_PahariEiJ_G0016787) #10	Plek (MGP_PahariEiJ_G0016786) #11	MGP_PahariEiJ_G0016785 #12	Ppp3r1 (MGP_PahariEiJ_G0016784) #13	Pno1 (MGP_PahariEiJ_G0016783) #15	Dnaaf10 (MGP_PahariEiJ_G0016782) #14	C1d (MGP_PahariEiJ_G0016781) #16	Etaa1 (MGP_PahariEiJ_G0016780) #17	Meis1 (MGP_PahariEiJ_G0016779) #18	Spred2 (MGP_PahariEiJ_G0016778) #20	Actr2 (MGP_PahariEiJ_G0016777) #21	Rab1a (MGP_PahariEiJ_G0016776) #22	Cep68 (MGP_PahariEiJ_G0016775) #23	Slc1a4 (MGP_PahariEiJ_G0016774) #24	Sertad2 (MGP_PahariEiJ_G0016773) #25	Aftph (MGP_PahariEiJ_G0016772) #26	Lgalsl (MGP_PahariEiJ_G0016771) #27	MGP_PahariEiJ_G0016770 #27	Peli1 (MGP_PahariEiJ_G0016769) #28	Vps54 (MGP_PahariEiJ_G0016768) #29	Ugp2 (MGP_PahariEiJ_G0016767) #30	Mdh1 (MGP_PahariEiJ_G0016766) #31	MGP_PahariEiJ_G0016765 #32	Otx1 (MGP_PahariEiJ_G0016764) #33	Ehbp1 (MGP_PahariEiJ_G0016763) #34	Tmem17 (MGP_PahariEiJ_G0016762) #35	MGP_PahariEiJ_G0016761 #36