Murinae	ANCESTRAL SPECIES	12	ENSGT00530000063608.A	ENSGT00940000160556 #7	ENSGT00390000001319 #8	ENSGT00940000155450 #9	ENSGT00390000012248 #10	ENSGT00940000157885 #11	ENSGT00390000004284 #12	ENSGT00940000156530.c #13	ENSGT00390000018052.s #15	ENSGT00950000183091.A.b #14	ENSGT00390000015405 #16	ENSGT00390000009597 #17	ENSGT00940000156327 #18	ENSGT00940000156841 #20	ENSGT00940000154556 #21	ENSGT00940000154958 #22	ENSGT00810000125473.A #23	ENSGT00940000157081 #24	ENSGT00530000063867.b #25	ENSGT00940000154186.a #26	ENSGT00940000155337 #27	ENSGT00950000183050.b.b.a #28	ENSGT00390000000583 #29	ENSGT00940000153464.B #30	ENSGT00530000063410.a #31	ENSGT00390000016551 #32	ENSGT00940000161234 #33	ENSGT00940000157597 #34	ENSGT00940000153899.b.b #35	ENSGT00940000155345 #37	ENSGT00950000183152.A
Mus	ANCESTRAL SPECIES	14	ENSGT00530000063608.A	ENSGT00940000160556 #7	ENSGT00390000001319 #8	ENSGT00940000155450 #9	ENSGT00390000012248 #10	ENSGT00940000157885 #11	ENSGT00390000004284 #12	ENSGT00940000156530.c #13	ENSGT00390000018052.s #15	ENSGT00950000183091.A.b #14	ENSGT00390000015405 #16	ENSGT00390000009597 #17	ENSGT00940000156327 #18	ENSGT00940000156841 #20	ENSGT00940000154556 #21	ENSGT00940000154958 #22	ENSGT00810000125473.A #23	ENSGT00940000157081 #24	ENSGT00530000063867.b #25	ENSGT00940000154186.a #26	ENSGT00940000155337 #27	ENSGT00950000183050.b.b.a #28	ENSGT00390000000583 #29	ENSGT00940000153464.B #30	ENSGT00530000063410.a #31	ENSGT00390000016551 #32	ENSGT00940000161234 #33	ENSGT00940000157597 #34	ENSGT00940000153899.b.b #35	ENSGT00940000155345 #37	ENSGT00950000183152.A
Mus_A	ANCESTRAL SPECIES	2	ENSGT00530000063608.A	ENSGT00940000160556 #7	ENSGT00390000001319.cb #8	ENSGT00940000155450 #9	ENSGT00390000012248 #10	ENSGT00940000157885 #11	ENSGT00390000004284 #12	ENSGT00940000156530.c #13	ENSGT00390000018052.s #15	ENSGT00950000183091.A.b #14	ENSGT00390000015405 #16	ENSGT00390000009597 #17	ENSGT00940000156327 #18	ENSGT00940000156841 #20	ENSGT00940000154556 #21	ENSGT00940000154958 #22	ENSGT00810000125473.A #23	ENSGT00940000157081 #24	ENSGT00530000063867.b #25	ENSGT00940000154186.a #26	ENSGT00940000155337 #27	ENSGT00950000183050.b.b.a #28	ENSGT00390000000583 #29	ENSGT00940000153464.B #30	ENSGT00530000063410.a #31	ENSGT00390000016551 #32	ENSGT00940000161234 #33	ENSGT00940000157597 #34	ENSGT00940000153899.b.b #35	ENSGT00940000155345 #37	ENSGT00950000183152.A
Mus_B	ANCESTRAL SPECIES	2	ENSGT00530000063608.A	ENSGT00940000160556 #7	ENSGT00390000001319.cb #8	ENSGT00940000155450 #9	ENSGT00390000012248 #10	ENSGT00940000157885 #11	ENSGT00390000004284 #12	ENSGT00940000156530.c #13	ENSGT00390000018052.s #15	ENSGT00950000183091.A.b #14	ENSGT00390000015405 #16	ENSGT00390000009597 #17	ENSGT00940000156327 #18	ENSGT00940000156841 #20	ENSGT00940000154556 #21	ENSGT00940000154958 #22	ENSGT00810000125473.A #23	ENSGT00940000157081 #24	ENSGT00530000063867.b #25	ENSGT00940000154186.a #26	ENSGT00940000155337 #27	ENSGT00950000183050.b.b.a #28	ENSGT00390000000583 #29	ENSGT00940000153464.B #30	ENSGT00530000063410.a #31	ENSGT00390000016551 #32	ENSGT00940000161234 #33	ENSGT00940000157597 #34	ENSGT00940000153899.b.b #35	ENSGT00940000155345 #37	ENSGT00950000183152.A
Mus_C	ANCESTRAL SPECIES	3	ENSGT00530000063608.A	ENSGT00940000160556 #7	ENSGT00390000001319.cb #8	ENSGT00940000155450 #9	ENSGT00390000012248 #10	ENSGT00940000157885 #11	ENSGT00390000004284 #12	ENSGT00940000156530.c #13	ENSGT00390000018052.s #15	ENSGT00950000183091.A.b #14	ENSGT00390000015405 #16	ENSGT00390000009597 #17	ENSGT00940000156327 #18	ENSGT00940000156841 #20	ENSGT00940000154556 #21	ENSGT00940000154958 #22	ENSGT00810000125473.A #23	ENSGT00940000157081 #24	ENSGT00530000063867.b #25	ENSGT00940000154186.a #26	ENSGT00940000155337 #27	ENSGT00950000183050.b.b.a #28	ENSGT00390000000583 #29	ENSGT00940000153464.B #30	ENSGT00530000063410.a #31	ENSGT00390000016551 #32	ENSGT00940000161234 #33	ENSGT00940000157597 #34	ENSGT00940000153899.b.b #35	ENSGT00940000155345 #37	ENSGT00950000183152.A
spretus	MODERN SPECIES	2	MGP_SPRETEiJ_G0016943 #7	Sec61g (MGP_SPRETEiJ_G0016944) #8	Egfr (MGP_SPRETEiJ_G0016945) #9	Fbxo48 (MGP_SPRETEiJ_G0016946) #10	Plek (MGP_SPRETEiJ_G0016947) #11	MGP_SPRETEiJ_G0016948 #12	Ppp3r1 (MGP_SPRETEiJ_G0016949) #13	Dnaaf10 (MGP_SPRETEiJ_G0016950) #14	Pno1 (MGP_SPRETEiJ_G0016951) #15	C1d (MGP_SPRETEiJ_G0016952) #16	Etaa1 (MGP_SPRETEiJ_G0016953) #17	Meis1 (MGP_SPRETEiJ_G0016954) #18	Asb12 (MGP_SPRETEiJ_G0016955) #19	Spred2 (MGP_SPRETEiJ_G0016956) #20	Actr2 (MGP_SPRETEiJ_G0016957) #21	Rab1a (MGP_SPRETEiJ_G0016958) #22	Cep68 (MGP_SPRETEiJ_G0016959) #23	Slc1a4 (MGP_SPRETEiJ_G0016960) #24	Sertad2 (MGP_SPRETEiJ_G0016961) #25	Aftph (MGP_SPRETEiJ_G0016962) #26	Lgalsl (MGP_SPRETEiJ_G0016963) #27	Peli1 (MGP_SPRETEiJ_G0016964) #28	Vps54 (MGP_SPRETEiJ_G0016965) #29	Ugp2 (MGP_SPRETEiJ_G0016966) #30	Mdh1 (MGP_SPRETEiJ_G0016967) #31	Wdpcp (MGP_SPRETEiJ_G0016968) #32	Otx1 (MGP_SPRETEiJ_G0016969) #33	Ehbp1 (MGP_SPRETEiJ_G0016970) #34	Tmem17 (MGP_SPRETEiJ_G0016971) #35	MGP_SPRETEiJ_G0016972 #36	B3gnt2 (MGP_SPRETEiJ_G0016973) #37
Steppe mouse	MODERN SPECIES	3178											Meis1 (ENSMSIG00000012755) #18	ENSMSIG00000013123	ENSMSIG00000013132	Spred2 (ENSMSIG00000013142) #20	Actr2 (ENSMSIG00000013218) #21	Rab1a (ENSMSIG00000013288) #22	Cep68 (ENSMSIG00000013342) #23	Slc1a4 (ENSMSIG00000013384) #24	ENSMSIG00000013417	Sertad2 (ENSMSIG00000013434) #25	Aftph (ENSMSIG00000013440) #26	ENSMSIG00000013501
Mouse	MODERN SPECIES	2	Pom121l12 (ENSMUSG00000084135)	Vstm2a (ENSMUSG00000048834) #7	Sec61g (ENSMUSG00000078974) #8	Egfr (ENSMUSG00000020122) #9	Fbxo48 (ENSMUSG00000044966) #10	Plek (ENSMUSG00000020120) #11	Cnrip1 (ENSMUSG00000044629) #12	Ppp3r1 (ENSMUSG00000033953) #13	Dnaaf10 (ENSMUSG00000078970) #14	Pno1 (ENSMUSG00000020116) #15	C1d (ENSMUSG00000000581) #16	Etaa1 (ENSMUSG00000016984) #17	Meis1 (ENSMUSG00000020160) #18	Spred2 (ENSMUSG00000045671) #20	Actr2 (ENSMUSG00000020152) #21	Rab1a (ENSMUSG00000020149) #22	Cep68 (ENSMUSG00000044066) #23	Slc1a4 (ENSMUSG00000020142) #24	Sertad2 (ENSMUSG00000049800) #25	Aftph (ENSMUSG00000049659) #26	Lgalsl (ENSMUSG00000042363) #27	Peli1 (ENSMUSG00000020134) #28	Vps54 (ENSMUSG00000020128) #29	Ugp2 (ENSMUSG00000001891) #30	Mdh1 (ENSMUSG00000020321) #31	Wdpcp (ENSMUSG00000020319) #32	Otx1 (ENSMUSG00000005917) #33	Ehbp1 (ENSMUSG00000042302) #34	Tmem17 (ENSMUSG00000049904) #35	B3gnt2 (ENSMUSG00000051650) #37	Commd1b (ENSMUSG00000098650)
Ryukyu mouse	MODERN SPECIES	2	Cobl (MGP_CAROLIEiJ_G0016100)	MGP_CAROLIEiJ_G0016101 #7	Sec61g (MGP_CAROLIEiJ_G0016102) #8	Egfr (MGP_CAROLIEiJ_G0016103) #9	Fbxo48 (MGP_CAROLIEiJ_G0016104) #10	Plek (MGP_CAROLIEiJ_G0016105) #11	Cnrip1 (MGP_CAROLIEiJ_G0016106) #12	Ppp3r1 (MGP_CAROLIEiJ_G0016107) #13	Dnaaf10 (MGP_CAROLIEiJ_G0016108) #14	Pno1 (MGP_CAROLIEiJ_G0016109) #15	C1d (MGP_CAROLIEiJ_G0016110) #16	Etaa1 (MGP_CAROLIEiJ_G0016111) #17	Meis1 (MGP_CAROLIEiJ_G0016112) #18	Spred2 (MGP_CAROLIEiJ_G0016113) #20	Actr2 (MGP_CAROLIEiJ_G0016114) #21	Rab1a (MGP_CAROLIEiJ_G0016115) #22	Cep68 (MGP_CAROLIEiJ_G0016116) #23	Slc1a4 (MGP_CAROLIEiJ_G0016117) #24	Sertad2 (MGP_CAROLIEiJ_G0016118) #25	Aftph (MGP_CAROLIEiJ_G0016119) #26	Gm5065 (MGP_CAROLIEiJ_G0016120) #27	Peli1 (MGP_CAROLIEiJ_G0016121) #28	Vps54 (MGP_CAROLIEiJ_G0016122) #29	Ugp2 (MGP_CAROLIEiJ_G0016123) #30	Mdh1 (MGP_CAROLIEiJ_G0016124) #31	Wdpcp (MGP_CAROLIEiJ_G0016125) #32	Otx1 (MGP_CAROLIEiJ_G0016126) #33	Ehbp1 (MGP_CAROLIEiJ_G0016127) #34	Tmem17 (MGP_CAROLIEiJ_G0016128) #35	MGP_CAROLIEiJ_G0016129 #36	MGP_CAROLIEiJ_G0016130
Shrew mouse	MODERN SPECIES	4	Cobl (MGP_PahariEiJ_G0016791)	MGP_PahariEiJ_G0016790 #7	Sec61g (MGP_PahariEiJ_G0016789) #8	Egfr (MGP_PahariEiJ_G0016788) #9	Fbxo48 (MGP_PahariEiJ_G0016787) #10	Plek (MGP_PahariEiJ_G0016786) #11	MGP_PahariEiJ_G0016785 #12	Ppp3r1 (MGP_PahariEiJ_G0016784) #13	Pno1 (MGP_PahariEiJ_G0016783) #15	Dnaaf10 (MGP_PahariEiJ_G0016782) #14	C1d (MGP_PahariEiJ_G0016781) #16	Etaa1 (MGP_PahariEiJ_G0016780) #17	Meis1 (MGP_PahariEiJ_G0016779) #18	Spred2 (MGP_PahariEiJ_G0016778) #20	Actr2 (MGP_PahariEiJ_G0016777) #21	Rab1a (MGP_PahariEiJ_G0016776) #22	Cep68 (MGP_PahariEiJ_G0016775) #23	Slc1a4 (MGP_PahariEiJ_G0016774) #24	Sertad2 (MGP_PahariEiJ_G0016773) #25	Aftph (MGP_PahariEiJ_G0016772) #26	Lgalsl (MGP_PahariEiJ_G0016771) #27	MGP_PahariEiJ_G0016770 #27	Peli1 (MGP_PahariEiJ_G0016769) #28	Vps54 (MGP_PahariEiJ_G0016768) #29	Ugp2 (MGP_PahariEiJ_G0016767) #30	Mdh1 (MGP_PahariEiJ_G0016766) #31	MGP_PahariEiJ_G0016765 #32	Otx1 (MGP_PahariEiJ_G0016764) #33	Ehbp1 (MGP_PahariEiJ_G0016763) #34	Tmem17 (MGP_PahariEiJ_G0016762) #35	MGP_PahariEiJ_G0016761 #36
Rat	DUPLICATION
Rat	DUPLICATION
Rat	DUPLICATION
Rat	DUPLICATION
Rat	MODERN SPECIES		Cfap90 (ENSRNOG00000047406)	Fastkd3 (ENSRNOG00000027422)	Mtrr (ENSRNOG00000017826)	Zfp455l1 (ENSRNOG00000042308)	ENSRNOG00000068953	RGD1566325 (ENSRNOG00000017963)	LOC102547287 (ENSRNOG00000016462)	LOC102549842 (ENSRNOG00000049259)	Zfp748 (ENSRNOG00000069921)	Spry3-ps1 (ENSRNOG00000064505)	LOC102551340 (ENSRNOG00000047145)	Zfp273l-ps1 (ENSRNOG00000046353)	ENSRNOG00000068667	ENSRNOG00000066169	ENSRNOG00000067171 #22	ENSRNOG00000070839 #22	ENSRNOG00000068976 #22	ENSRNOG00000063413	ENSRNOG00000067926	ENSRNOG00000069813	ENSRNOG00000067477 #22	ENSRNOG00000070838 #22	AABR07001348.1 (ENSRNOG00000023081)	Ppp1r14c (ENSRNOG00000016368)	Iyd (ENSRNOG00000016286)	Plekhg1 (ENSRNOG00000016011)	Mthfd1l (ENSRNOG00000019582)	Akap12 (ENSRNOG00000019549)	Zbtb2 (ENSRNOG00000019544)	Rmnd1 (ENSRNOG00000019501)	Armt1 (ENSRNOG00000019489)
Rat	MODERN SPECIES		Adcy2 (ENSRNOG00000032150)	Cfap90 (ENSRNOG00000047406)	Fastkd3 (ENSRNOG00000027422)	Mtrr (ENSRNOG00000017826)	Zfp455l1 (ENSRNOG00000042308)	ENSRNOG00000068953	RGD1566325 (ENSRNOG00000017963)	LOC102547287 (ENSRNOG00000016462)	LOC102549842 (ENSRNOG00000049259)	Zfp748 (ENSRNOG00000069921)	Spry3-ps1 (ENSRNOG00000064505)	LOC102551340 (ENSRNOG00000047145)	Zfp273l-ps1 (ENSRNOG00000046353)	ENSRNOG00000068667	ENSRNOG00000066169	ENSRNOG00000067171 #22	ENSRNOG00000070839 #22	ENSRNOG00000068976 #22	ENSRNOG00000063413	ENSRNOG00000067926	ENSRNOG00000069813	ENSRNOG00000067477 #22	ENSRNOG00000070838 #22	AABR07001348.1 (ENSRNOG00000023081)	Ppp1r14c (ENSRNOG00000016368)	Iyd (ENSRNOG00000016286)	Plekhg1 (ENSRNOG00000016011)	Mthfd1l (ENSRNOG00000019582)	Akap12 (ENSRNOG00000019549)	Zbtb2 (ENSRNOG00000019544)	Rmnd1 (ENSRNOG00000019501)
Rat	DUPLICATION
Rat	MODERN SPECIES		Fastkd3 (ENSRNOG00000027422)	Mtrr (ENSRNOG00000017826)	Zfp455l1 (ENSRNOG00000042308)	ENSRNOG00000068953	RGD1566325 (ENSRNOG00000017963)	LOC102547287 (ENSRNOG00000016462)	LOC102549842 (ENSRNOG00000049259)	Zfp748 (ENSRNOG00000069921)	Spry3-ps1 (ENSRNOG00000064505)	LOC102551340 (ENSRNOG00000047145)	Zfp273l-ps1 (ENSRNOG00000046353)	ENSRNOG00000068667	ENSRNOG00000066169	ENSRNOG00000067171 #22	ENSRNOG00000070839 #22	ENSRNOG00000068976 #22	ENSRNOG00000063413	ENSRNOG00000067926	ENSRNOG00000069813	ENSRNOG00000067477 #22	ENSRNOG00000070838 #22	AABR07001348.1 (ENSRNOG00000023081)	Ppp1r14c (ENSRNOG00000016368)	Iyd (ENSRNOG00000016286)	Plekhg1 (ENSRNOG00000016011)	Mthfd1l (ENSRNOG00000019582)	Akap12 (ENSRNOG00000019549)	Zbtb2 (ENSRNOG00000019544)	Rmnd1 (ENSRNOG00000019501)	Armt1 (ENSRNOG00000019489)	Ccdc170 (ENSRNOG00000024280)
Rat	MODERN SPECIES		RGD1566325 (ENSRNOG00000017963)	LOC102547287 (ENSRNOG00000016462)	LOC102549842 (ENSRNOG00000049259)	Zfp748 (ENSRNOG00000069921)	Spry3-ps1 (ENSRNOG00000064505)	LOC102551340 (ENSRNOG00000047145)	Zfp273l-ps1 (ENSRNOG00000046353)	ENSRNOG00000068667	ENSRNOG00000066169	ENSRNOG00000067171 #22	ENSRNOG00000070839 #22	ENSRNOG00000068976 #22	ENSRNOG00000063413	ENSRNOG00000067926	ENSRNOG00000069813	ENSRNOG00000067477 #22	ENSRNOG00000070838 #22	AABR07001348.1 (ENSRNOG00000023081)	Ppp1r14c (ENSRNOG00000016368)	Iyd (ENSRNOG00000016286)	Plekhg1 (ENSRNOG00000016011)	Mthfd1l (ENSRNOG00000019582)	Akap12 (ENSRNOG00000019549)	Zbtb2 (ENSRNOG00000019544)	Rmnd1 (ENSRNOG00000019501)	Armt1 (ENSRNOG00000019489)	Ccdc170 (ENSRNOG00000024280)	Esr1 (ENSRNOG00000019358)	Syne1 (ENSRNOG00000018960)	Myct1 (ENSRNOG00000018858)	Vip (ENSRNOG00000018808)
Rat	MODERN SPECIES		Fbxo5 (ENSRNOG00000024077)	Vip (ENSRNOG00000018808)	Myct1 (ENSRNOG00000018858)	Syne1 (ENSRNOG00000018960)	Esr1 (ENSRNOG00000019358)	Ccdc170 (ENSRNOG00000024280)	Armt1 (ENSRNOG00000019489)	Rmnd1 (ENSRNOG00000019501)	Zbtb2 (ENSRNOG00000019544)	Akap12 (ENSRNOG00000019549)	Mthfd1l (ENSRNOG00000019582)	Plekhg1 (ENSRNOG00000016011)	Iyd (ENSRNOG00000016286)	Ppp1r14c (ENSRNOG00000016368)	AABR07001348.1 (ENSRNOG00000023081)	ENSRNOG00000070838 #22	ENSRNOG00000067477 #22	ENSRNOG00000069813	ENSRNOG00000067926	ENSRNOG00000063413	ENSRNOG00000068976 #22	ENSRNOG00000070839 #22	ENSRNOG00000067171 #22	ENSRNOG00000066169	ENSRNOG00000068667	Zfp273l-ps1 (ENSRNOG00000046353)	LOC102551340 (ENSRNOG00000047145)	Spry3-ps1 (ENSRNOG00000064505)	Zfp748 (ENSRNOG00000069921)	LOC102549842 (ENSRNOG00000049259)	LOC102547287 (ENSRNOG00000016462)
Rat	MODERN SPECIES	5	Sec61g (ENSRNOG00000005203) #8	Egfr (ENSRNOG00000004332) #9	Fbxo48 (ENSRNOG00000023026) #10	Plek (ENSRNOG00000005214) #11	Cnrip1 (ENSRNOG00000005326) #12	Pno1 (ENSRNOG00000005524) #15	C1d (ENSRNOG00000005982) #16	Hnrnpk-ps1 (ENSRNOG00000063529)	Etaa1l1 (ENSRNOG00000006185) #17	Meis1 (ENSRNOG00000004606) #18	Spred2 (ENSRNOG00000004888) #20	Actr2 (ENSRNOG00000004959) #21	AABR07016566.1 (ENSRNOG00000051648)	ENSRNOG00000070133	Rpl38 (ENSRNOG00000033686)	Rab1a (ENSRNOG00000004992) #22	Cep68 (ENSRNOG00000027282) #23	Slc1a4 (ENSRNOG00000005248) #24	Sertad2 (ENSRNOG00000005393) #25	Aftph (ENSRNOG00000005411) #26	LOC108352861 (ENSRNOG00000029052)	Lgalsl (ENSRNOG00000005464) #27	LOC108352809 (ENSRNOG00000042277)	Peli1 (ENSRNOG00000006329) #28	Vps54 (ENSRNOG00000007125) #29	Ugp2 (ENSRNOG00000008079) #30	Mdh1 (ENSRNOG00000008103) #31	Wdpcp (ENSRNOG00000054331) #32	ENSRNOG00000065408	Otx1 (ENSRNOG00000065081) #33	Ehbp1 (ENSRNOG00000008917) #34