Rodentia_A	ANCESTRAL SPECIES	22	ENSGT00940000157694 #10	ENSGT00940000154474.A #11	ENSGT00940000157874 #12	ENSGT00940000157849 #13	ENSGT00940000157872 #14	ENSGT00390000018090	ENSGT00940000162479	ENSGT00940000155360.B #15	ENSGT00940000168071	ENSGT00940000156564 #16	ENSGT00940000155401.h ##17	ENSGT00390000006347.b #18	ENSGT00390000000917 #19	ENSGT00940000161024 #20	ENSGT00940000157234 #21	ENSGT00940000157678 #22	ENSGT00940000161407	ENSGT00940000158920 #23	ENSGT00940000157536.b #24	ENSGT00950000186184	ENSGT00940000158114 #25	ENSGT00860000133881 #26	ENSGT00940000155696 #27	ENSGT00730000111249 #28	ENSGT00940000155868 #29	ENSGT00910000148742	ENSGT00950000182808.a.a.a.a.a #30	ENSGT00940000159229 #31	ENSGT00510000048601.b #32	ENSGT00940000163631	ENSGT00510000048601.a #33
Sciuridae	ANCESTRAL SPECIES	46	ENSGT00390000001101 #9	ENSGT00940000157694 #10	ENSGT00940000154474.A #11	ENSGT00940000157874 #12	ENSGT00940000157849 #13	ENSGT00940000157872 #14	ENSGT00390000018090	ENSGT00940000162479	ENSGT00940000155360.B #15	ENSGT00940000156564 #16	ENSGT00940000155401.g #17	ENSGT00390000006347.b #18	ENSGT00390000000917 #19	ENSGT00940000161024 #20	ENSGT00940000157234 #21	ENSGT00940000157678 #22	ENSGT00940000161407	ENSGT00940000158920 #23	ENSGT00940000157536.b #24	ENSGT00950000186184	ENSGT00940000158114 #25	ENSGT00860000133881 #26	ENSGT00940000155696 #27	ENSGT00730000111249 #28	ENSGT00940000155868 #29	ENSGT00910000148742	ENSGT00950000182808.a.a.a.a.a #30	ENSGT00940000159229 #31	ENSGT00510000048601.b #32	ENSGT00510000048601.a #33	ENSGT00940000158318 #34
Marmotini	ANCESTRAL SPECIES	29	ENSGT00950000182899.B.a #7	ENSGT00940000156905 #8	ENSGT00390000001101 #9	ENSGT00940000157694 #10	ENSGT00940000154474.A #11	ENSGT00940000157874 #12	ENSGT00940000157849 #13	ENSGT00940000157872 #14	ENSGT00940000155360.B #15	ENSGT00940000156564 #16	ENSGT00940000155401.g #17	ENSGT00390000006347.b #18	ENSGT00390000000917 #19	ENSGT00940000161024 #20	ENSGT00940000157234 #21	ENSGT00940000157678 #22	ENSGT00940000161407	ENSGT00940000158920 #23	ENSGT00940000157536.b #24	ENSGT00950000186184	ENSGT00940000158114 #25	ENSGT00860000133881 #26	ENSGT00940000155696 #27	ENSGT00730000111249 #28	ENSGT00940000155868 #29	ENSGT00950000182808.a.a.a.a.a #30	ENSGT00940000159229 #31	ENSGT00510000048601.b #32	ENSGT00510000048601.a #33	ENSGT00940000158318 #34	ENSGT00940000162655 #35
Marmotini_b	ANCESTRAL SPECIES	39	ENSGT00950000182899.B.a #7	ENSGT00940000156905 #8	ENSGT00390000001101 #9	ENSGT00940000157694 #10	ENSGT00940000154474.A #11	ENSGT00940000157874 #12	ENSGT00940000157849 #13	ENSGT00940000157872 #14	ENSGT00940000155360.B #15	ENSGT00940000156564 #16	ENSGT00940000155401.g #17	ENSGT00390000006347.b #18	ENSGT00390000000917 #19	ENSGT00940000161024 #20	ENSGT00940000157234 #21	ENSGT00940000157678 #22	ENSGT00940000161407	ENSGT00940000158920 #23	ENSGT00940000157536.b #24	ENSGT00950000186184	ENSGT00940000158114 #25	ENSGT00860000133881 #26	ENSGT00940000155696 #27	ENSGT00730000111249 #28	ENSGT00940000155868 #29	ENSGT00950000182808.a.a.a.a.a #30	ENSGT00940000159229 #31	ENSGT00510000048601.b #32	ENSGT00510000048601.a #33	ENSGT00940000158318 #34	ENSGT00940000162655 #35
Squirrel	MODERN SPECIES	72	LAMP1 (ENSSTOG00000003961) #7	CUL4A (ENSSTOG00000003940) #8	PCID2 (ENSSTOG00000003919) #9	F10 (ENSSTOG00000020166) #10	F7 (ENSSTOG00000025843) #11	MCF2L (ENSSTOG00000003498) #12	ATP11A (ENSSTOG00000000270) #13	TUBGCP3 (ENSSTOG00000000803) #14	ARHGEF7 (ENSSTOG00000014578) #15	ANKRD10 (ENSSTOG00000023244) #16	ENSSTOG00000026920 #17	CARS2 (ENSSTOG00000012158) #18	NAXD (ENSSTOG00000012153) #19	RAB20 (ENSSTOG00000008251) #20	COL4A2 (ENSSTOG00000026757) #21	COL4A1 (ENSSTOG00000004254) #22	MYO16 (ENSSTOG00000005498) #23	TNFSF13B (ENSSTOG00000027182) #24	ABHD13 (ENSSTOG00000027704) #25	LIG4 (ENSSTOG00000024303) #26	NALF1 (ENSSTOG00000002944) #27	ARGLU1 (ENSSTOG00000028399) #28	EFNB2 (ENSSTOG00000007085) #29	SLC10A2 (ENSSTOG00000006381) #30	METTL21EP (ENSSTOG00000006370) #31	ERCC5 (ENSSTOG00000006330) #32	BIVM (ENSSTOG00000006314) #33	POGLUT2 (ENSSTOG00000006283) #34	TEX30 (ENSSTOG00000006265) #35	METTL21C (ENSSTOG00000006231) #36	TPP2 (ENSSTOG00000006188) #37
Arctic ground squirrel	MODERN SPECIES	7									ANKRD10 (ENSUPAG00010011503) #16	ING1 (ENSUPAG00010011497) #17	CARS2 (ENSUPAG00010011459) #18	NAXD (ENSUPAG00010011425) #19	ENSUPAG00010011414	RAB20 (ENSUPAG00010011409) #20	COL4A2 (ENSUPAG00010011379) #21	COL4A1 (ENSUPAG00010011351) #22	IRS2 (ENSUPAG00010011346)	ENSUPAG00010011315 #23	TNFSF13B (ENSUPAG00010011297) #24	ENSUPAG00010011292	ABHD13 (ENSUPAG00010011290) #25	LIG4 (ENSUPAG00010011286) #26	NALF1 (ENSUPAG00010011279) #27	ARGLU1 (ENSUPAG00010011266) #28	EFNB2 (ENSUPAG00010011257) #29	SLC10A2 (ENSUPAG00010011241) #30	METTL21EP (ENSUPAG00010011230) #31	ERCC5 (ENSUPAG00010010723) #32	ENSUPAG00010010715	BIVM (ENSUPAG00010010689) #33	POGLUT2 (ENSUPAG00010010649) #34
Alpin marmot	MODERN SPECIES	13	PCID2 (ENSMMMG00000019625) #9	F10 (ENSMMMG00000019639) #10	F7 (ENSMMMG00000019651) #11	MCF2L (ENSMMMG00000019681) #12	ATP11A (ENSMMMG00000019764) #13	TUBGCP3 (ENSMMMG00000019793) #14	ENSMMMG00000019809	ARHGEF7 (ENSMMMG00000019817) #15	ENSMMMG00000019872 #16	ENSMMMG00000019874 #16	ENSMMMG00000019878 #17	CARS2 (ENSMMMG00000019885) #18	NAXD (ENSMMMG00000020065) #19	RAB20 (ENSMMMG00000020082) #20	COL4A2 (ENSMMMG00000020085) #21	COL4A1 (ENSMMMG00000020115) #22	ENSMMMG00000020163 #23	TNFSF13B (ENSMMMG00000020182) #24	ENSMMMG00000020192	ABHD13 (ENSMMMG00000020197) #25	LIG4 (ENSMMMG00000020199) #26	NALF1 (ENSMMMG00000020209) #27	ARGLU1 (ENSMMMG00000020228) #28	EFNB2 (ENSMMMG00000020234) #29	ENSMMMG00000020243	METTL21EP (ENSMMMG00000020269) #31	ERCC5 (ENSMMMG00000020279) #32	BIVM (ENSMMMG00000020283) #33	POGLUT2 (ENSMMMG00000020290) #34	TEX30 (ENSMMMG00000020317) #35	METTL21C (ENSMMMG00000020360) #36
Eurasian red squirrel	MODERN SPECIES	13	F7 (ENSSVLG00005001724) #11	ENSSVLG00005001682	MCF2L (ENSSVLG00005001241) #12	ATP11A (ENSSVLG00005000814) #13	ENSSVLG00005000771	ENSSVLG00005000688 #14	ENSSVLG00005000637	SOX1 (ENSSVLG00005000621)	ARHGEF7 (ENSSVLG00005000486) #15	ENSSVLG00005000341 #16	ING1 (ENSSVLG00005000309) ##17	CARS2 (ENSSVLG00005000283) #18	NAXD (ENSSVLG00005004547) #19	RAB20 (ENSSVLG00005004525) #20	COL4A2 (ENSSVLG00005004495) #21	COL4A1 (ENSSVLG00005004419) #22	IRS2 (ENSSVLG00005004379)	ENSSVLG00005004320 #23	TNFSF13B (ENSSVLG00005004264) #24	ENSSVLG00005004241	LIG4 (ENSSVLG00005004231) #26	NALF1 (ENSSVLG00005004223) #27	ARGLU1 (ENSSVLG00005004186) #28	EFNB2 (ENSSVLG00005004169) #29	ENSSVLG00005004156	ENSSVLG00005004144	SLC10A2 (ENSSVLG00005004129) #30	METTL21EP (ENSSVLG00005004116) #31	ENSSVLG00005004102	ENSSVLG00005004093	BIVM (ENSSVLG00005004067) #33
Hystricomorpha	ANCESTRAL SPECIES	25	ENSGT00940000154505.A	ENSGT00940000157694 #10	ENSGT00940000154474.A #11	ENSGT00940000157874 #12	ENSGT00940000157849 #13	ENSGT00940000157872 #14	ENSGT00940000162479	ENSGT00940000155360.B #15	ENSGT00940000168071	ENSGT00940000156564 #16	ENSGT00940000155401.h ##17	ENSGT00390000006347.b #18	ENSGT00390000000917 #19	ENSGT00940000161024 #20	ENSGT00940000157234 #21	ENSGT00940000157678 #22	ENSGT00940000161407	ENSGT00940000158920.o #23	ENSGT00940000157536.b #24	ENSGT00940000158114 #25	ENSGT00860000133881 #26	ENSGT00940000155696 #27	ENSGT00730000111249 #28	ENSGT00940000155868 #29	ENSGT00950000182808.a.a.a.a.a #30	ENSGT00940000159229 #31	ENSGT00510000048601.b #32	ENSGT00940000163631	ENSGT00510000048601.a #33	ENSGT00940000158318 #34	ENSGT00940000162655 #35
Hystricomorpha_a	ANCESTRAL SPECIES	21	ENSGT00940000154505.A	ENSGT00940000157694 #10	ENSGT00940000154474.A #11	ENSGT00940000157874 #12	ENSGT00940000157849 #13	ENSGT00940000157872 #14	ENSGT00510000049560	ENSGT00940000155360.B #15	ENSGT00940000168071	ENSGT00940000156564 #16	ENSGT00940000155401.h ##17	ENSGT00390000006347.b #18	ENSGT00390000000917 #19	ENSGT00940000161024 #20	ENSGT00940000157234 #21	ENSGT00940000157678 #22	ENSGT00940000161407	ENSGT00940000158920.o #23	ENSGT00940000157536.b #24	ENSGT00940000158114 #25	ENSGT00860000133881 #26	ENSGT00940000155696 #27	ENSGT00730000111249 #28	ENSGT00940000155868 #29	ENSGT00950000182808.a.a.a.a.a #30	ENSGT00940000159229 #31	ENSGT00510000048601.b #32	ENSGT00510000048601.a #33	ENSGT00940000158318 #34	ENSGT00940000162655 #35	ENSGT00940000156596 #36
Hystricomorpha_b	ANCESTRAL SPECIES	44	ENSGT00940000157694 #10	ENSGT00940000154474.A #11	ENSGT00940000157874 #12	ENSGT00940000157849 #13	ENSGT00940000157872 #14	ENSGT00510000049560	ENSGT00940000155360.B #15	ENSGT00940000168071	ENSGT00940000156564 #16	ENSGT00940000155401.h ##17	ENSGT00390000006347.b #18	ENSGT00390000000917 #19	ENSGT00390000004735.B.a.b	ENSGT00940000161024 #20	ENSGT00940000157234 #21	ENSGT00940000157678 #22	ENSGT00940000161407	ENSGT00940000158920.o #23	ENSGT00940000157536.b #24	ENSGT00940000158114 #25	ENSGT00860000133881 #26	ENSGT00940000155696 #27	ENSGT00730000111249 #28	ENSGT00940000155868 #29	ENSGT00950000182808.a.a.a.a.a #30	ENSGT00940000159229 #31	ENSGT00940000163631	ENSGT00510000048601.b #32	ENSGT00510000048601.a #33	ENSGT00940000158318 #34	ENSGT00940000162655 #35
Long-tailed chinchilla	MODERN SPECIES	111	PROZ (ENSCLAG00000002909)	F10 (ENSCLAG00000004028) #10	F7 (ENSCLAG00000004276) #11	MCF2L (ENSCLAG00000002098) #12	ATP11A (ENSCLAG00000006784) #13	TUBGCP3 (ENSCLAG00000001848) #14	ENSCLAG00000001914	ARHGEF7 (ENSCLAG00000002159) #15	ENSCLAG00000015201	ANKRD10 (ENSCLAG00000009950) #16	CARS2 (ENSCLAG00000010030) #18	ING1 (ENSCLAG00000017685) ##17	NAXD (ENSCLAG00000008979) #19	ENSCLAG00000010867	COL4A2 (ENSCLAG00000002637) #21	COL4A1 (ENSCLAG00000003263) #22	IRS2 (ENSCLAG00000003689)	MYO16 (ENSCLAG00000004226) #23	TNFSF13B (ENSCLAG00000002786) #24	ABHD13 (ENSCLAG00000003352) #25	LIG4 (ENSCLAG00000003376) #26	NALF1 (ENSCLAG00000003458) #27	ARGLU1 (ENSCLAG00000003538) #28	EFNB2 (ENSCLAG00000003563) #29	SLC10A2 (ENSCLAG00000002092) #30	METTL21EP (ENSCLAG00000002141) #31	ERCC5 (ENSCLAG00000002232) #32	BIVM (ENSCLAG00000001814) #33	POGLUT2 (ENSCLAG00000001918) #34	TEX30 (ENSCLAG00000002020) #35	METTL21C (ENSCLAG00000002066) #36
Degu	MODERN SPECIES	80	F10 (ENSODEG00000008696) #10	MCF2L (ENSODEG00000009412) #12	ATP11A (ENSODEG00000008675) #13	ENSODEG00000008533	TUBGCP3 (ENSODEG00000008609) #14	ENSODEG00000019619	ENSODEG00000009444	ARHGEF7 (ENSODEG00000009477) #15	ENSODEG00000008348 #16	ING1 (ENSODEG00000008422) ##17	CARS2 (ENSODEG00000008933) #18	NAXD (ENSODEG00000008623) #19	ENSODEG00000019961	RAB20 (ENSODEG00000010199) #20	COL4A2 (ENSODEG00000012107) #21	COL4A1 (ENSODEG00000011076) #22	IRS2 (ENSODEG00000009721)	MYO16 (ENSODEG00000008856) #23	TNFSF13B (ENSODEG00000010925) #24	ABHD13 (ENSODEG00000019588) #25	LIG4 (ENSODEG00000019683) #26	ENSODEG00000008996	NALF1 (ENSODEG00000009813) #27	ARGLU1 (ENSODEG00000009389) #28	EFNB2 (ENSODEG00000010207) #29	SLC10A2 (ENSODEG00000009576) #30	METTL21EP (ENSODEG00000012296) #31	ENSODEG00000009687	BIVM (ENSODEG00000012842) #33	POGLUT2 (ENSODEG00000010848) #34	TEX30 (ENSODEG00000009629) #35
Guinea pig	MODERN SPECIES	5	CUL4A (ENSCPOG00000007488) #8	PCID2 (ENSCPOG00000014206) #9	PROZ (ENSCPOG00000014204)	F10 (ENSCPOG00000005297) #10	F7 (ENSCPOG00000005296) #11	MCF2L (ENSCPOG00000025369) #12	ATP11A (ENSCPOG00000010539) #13	TUBGCP3 (ENSCPOG00000027201) #14	ARHGEF7 (ENSCPOG00000010585) #15	ANKRD10 (ENSCPOG00000032064) #16	ING1 (ENSCPOG00000035111) ##17	CARS2 (ENSCPOG00000024839) #18	NAXD (ENSCPOG00000019974) #19	RAB20 (ENSCPOG00000034193) #20	COL4A2 (ENSCPOG00000010611) #21	COL4A1 (ENSCPOG00000026271) #22	MYO16 (ENSCPOG00000002412) #23	TNFSF13B (ENSCPOG00000032575) #24	ABHD13 (ENSCPOG00000026748) #25	LIG4 (ENSCPOG00000014266) #26	NALF1 (ENSCPOG00000013221) #27	ENSCPOG00000033101 #28	EFNB2 (ENSCPOG00000038211) #29	SLC10A2 (ENSCPOG00000001207) #30	METTL21EP (ENSCPOG00000038131) #31	ERCC5 (ENSCPOG00000001372) #32	BIVM (ENSCPOG00000038433) #33	POGLUT2 (ENSCPOG00000001369) #34	TEX30 (ENSCPOG00000032316) #35	METTL21C (ENSCPOG00000036833) #36	TPP2 (ENSCPOG00000011898) #37