Rodentia_A	ANCESTRAL SPECIES	22	ENSGT00940000157694 #7	ENSGT00940000154474.A	ENSGT00940000157874 #8	ENSGT00940000157849 #9	ENSGT00940000157872 #11	ENSGT00390000018090	ENSGT00940000162479	ENSGT00940000155360.B #14	ENSGT00940000168071	ENSGT00940000156564 #15	ENSGT00940000155401.h #16	ENSGT00390000006347.b #17	ENSGT00390000000917 #18	ENSGT00940000161024 #20	ENSGT00940000157234 #21	ENSGT00940000157678 #22	ENSGT00940000161407 #23	ENSGT00940000158920 #24	ENSGT00940000157536.b #25	ENSGT00950000186184	ENSGT00940000158114 #26	ENSGT00860000133881 #27	ENSGT00940000155696 #29	ENSGT00730000111249 #30	ENSGT00940000155868 #31	ENSGT00910000148742	ENSGT00950000182808.a.a.a.a.a #32	ENSGT00940000159229 #33	ENSGT00510000048601.b ##35	ENSGT00940000163631 #34	ENSGT00510000048601.a #35
Hystricomorpha	ANCESTRAL SPECIES	25	ENSGT00940000154505.A	ENSGT00940000157694 #7	ENSGT00940000154474.A	ENSGT00940000157874 #8	ENSGT00940000157849 #9	ENSGT00940000157872 #11	ENSGT00940000162479	ENSGT00940000155360.B #14	ENSGT00940000168071	ENSGT00940000156564 #15	ENSGT00940000155401.h #16	ENSGT00390000006347.b #17	ENSGT00390000000917 #18	ENSGT00940000161024 #20	ENSGT00940000157234 #21	ENSGT00940000157678 #22	ENSGT00940000161407 #23	ENSGT00940000158920.o #24	ENSGT00940000157536.b #25	ENSGT00940000158114 #26	ENSGT00860000133881 #27	ENSGT00940000155696 #29	ENSGT00730000111249 #30	ENSGT00940000155868 #31	ENSGT00950000182808.a.a.a.a.a #32	ENSGT00940000159229 #33	ENSGT00510000048601.b ##35	ENSGT00940000163631 #34	ENSGT00510000048601.a #35	ENSGT00940000158318 #36	ENSGT00940000162655 #37
Hystricomorpha_a	ANCESTRAL SPECIES	21	ENSGT00940000154505.A	ENSGT00940000157694 #7	ENSGT00940000154474.A	ENSGT00940000157874 #8	ENSGT00940000157849 #9	ENSGT00940000157872 #11	ENSGT00510000049560	ENSGT00940000155360.B #14	ENSGT00940000168071	ENSGT00940000156564 #15	ENSGT00940000155401.h #16	ENSGT00390000006347.b #17	ENSGT00390000000917 #18	ENSGT00940000161024 #20	ENSGT00940000157234 #21	ENSGT00940000157678 #22	ENSGT00940000161407 #23	ENSGT00940000158920.o #24	ENSGT00940000157536.b #25	ENSGT00940000158114 #26	ENSGT00860000133881 #27	ENSGT00940000155696 #29	ENSGT00730000111249 #30	ENSGT00940000155868 #31	ENSGT00950000182808.a.a.a.a.a #32	ENSGT00940000159229 #33	ENSGT00510000048601.b ##35	ENSGT00510000048601.a #35	ENSGT00940000158318 #36	ENSGT00940000162655 #37	ENSGT00940000156596
Hystricomorpha_b	ANCESTRAL SPECIES	44	ENSGT00940000157694 #7	ENSGT00940000154474.A	ENSGT00940000157874 #8	ENSGT00940000157849 #9	ENSGT00940000157872 #11	ENSGT00510000049560	ENSGT00940000155360.B #14	ENSGT00940000168071	ENSGT00940000156564 #15	ENSGT00940000155401.h #16	ENSGT00390000006347.b #17	ENSGT00390000000917 #18	ENSGT00390000004735.B.a.b #19	ENSGT00940000161024 #20	ENSGT00940000157234 #21	ENSGT00940000157678 #22	ENSGT00940000161407 #23	ENSGT00940000158920.o #24	ENSGT00940000157536.b #25	ENSGT00940000158114 #26	ENSGT00860000133881 #27	ENSGT00940000155696 #29	ENSGT00730000111249 #30	ENSGT00940000155868 #31	ENSGT00950000182808.a.a.a.a.a #32	ENSGT00940000159229 #33	ENSGT00940000163631 #34	ENSGT00510000048601.b ##35	ENSGT00510000048601.a #35	ENSGT00940000158318 #36	ENSGT00940000162655 #37
Degu	MODERN SPECIES	80	F10 (ENSODEG00000008696) #7	MCF2L (ENSODEG00000009412) #8	ATP11A (ENSODEG00000008675) #9	ENSODEG00000008533 #10	TUBGCP3 (ENSODEG00000008609) #11	ENSODEG00000019619 #12	ENSODEG00000009444 #13	ARHGEF7 (ENSODEG00000009477) #14	ENSODEG00000008348 #15	ING1 (ENSODEG00000008422) #16	CARS2 (ENSODEG00000008933) #17	NAXD (ENSODEG00000008623) #18	ENSODEG00000019961 #19	RAB20 (ENSODEG00000010199) #20	COL4A2 (ENSODEG00000012107) #21	COL4A1 (ENSODEG00000011076) #22	IRS2 (ENSODEG00000009721) #23	MYO16 (ENSODEG00000008856) #24	TNFSF13B (ENSODEG00000010925) #25	ABHD13 (ENSODEG00000019588) #26	LIG4 (ENSODEG00000019683) #27	ENSODEG00000008996 #28	NALF1 (ENSODEG00000009813) #29	ARGLU1 (ENSODEG00000009389) #30	EFNB2 (ENSODEG00000010207) #31	SLC10A2 (ENSODEG00000009576) #32	METTL21EP (ENSODEG00000012296) #33	ENSODEG00000009687 #34	BIVM (ENSODEG00000012842) #35	POGLUT2 (ENSODEG00000010848) #36	TEX30 (ENSODEG00000009629) #37
Long-tailed chinchilla	MODERN SPECIES	111	PROZ (ENSCLAG00000002909)	F10 (ENSCLAG00000004028) #7	F7 (ENSCLAG00000004276)	MCF2L (ENSCLAG00000002098) #8	ATP11A (ENSCLAG00000006784) #9	TUBGCP3 (ENSCLAG00000001848) #11	ENSCLAG00000001914	ARHGEF7 (ENSCLAG00000002159) #14	ENSCLAG00000015201	ANKRD10 (ENSCLAG00000009950) #15	CARS2 (ENSCLAG00000010030) #17	ING1 (ENSCLAG00000017685) #16	NAXD (ENSCLAG00000008979) #18	ENSCLAG00000010867 #19	COL4A2 (ENSCLAG00000002637) #21	COL4A1 (ENSCLAG00000003263) #22	IRS2 (ENSCLAG00000003689) #23	MYO16 (ENSCLAG00000004226) #24	TNFSF13B (ENSCLAG00000002786) #25	ABHD13 (ENSCLAG00000003352) #26	LIG4 (ENSCLAG00000003376) #27	NALF1 (ENSCLAG00000003458) #29	ARGLU1 (ENSCLAG00000003538) #30	EFNB2 (ENSCLAG00000003563) #31	SLC10A2 (ENSCLAG00000002092) #32	METTL21EP (ENSCLAG00000002141) #33	ERCC5 (ENSCLAG00000002232) ##35	BIVM (ENSCLAG00000001814) #35	POGLUT2 (ENSCLAG00000001918) #36	TEX30 (ENSCLAG00000002020) #37	METTL21C (ENSCLAG00000002066)
Guinea pig	MODERN SPECIES	5	CUL4A (ENSCPOG00000007488)	PCID2 (ENSCPOG00000014206)	PROZ (ENSCPOG00000014204)	F10 (ENSCPOG00000005297) #7	F7 (ENSCPOG00000005296)	MCF2L (ENSCPOG00000025369) #8	ATP11A (ENSCPOG00000010539) #9	TUBGCP3 (ENSCPOG00000027201) #11	ARHGEF7 (ENSCPOG00000010585) #14	ANKRD10 (ENSCPOG00000032064) #15	ING1 (ENSCPOG00000035111) #16	CARS2 (ENSCPOG00000024839) #17	NAXD (ENSCPOG00000019974) #18	RAB20 (ENSCPOG00000034193) #20	COL4A2 (ENSCPOG00000010611) #21	COL4A1 (ENSCPOG00000026271) #22	MYO16 (ENSCPOG00000002412) #24	TNFSF13B (ENSCPOG00000032575) #25	ABHD13 (ENSCPOG00000026748) #26	LIG4 (ENSCPOG00000014266) #27	NALF1 (ENSCPOG00000013221) #29	ENSCPOG00000033101 #30	EFNB2 (ENSCPOG00000038211) #31	SLC10A2 (ENSCPOG00000001207) #32	METTL21EP (ENSCPOG00000038131) #33	ERCC5 (ENSCPOG00000001372) ##35	BIVM (ENSCPOG00000038433) #35	POGLUT2 (ENSCPOG00000001369) #36	TEX30 (ENSCPOG00000032316) #37	METTL21C (ENSCPOG00000036833)	TPP2 (ENSCPOG00000011898)
Sciuridae	ANCESTRAL SPECIES	46	ENSGT00390000001101	ENSGT00940000157694 #7	ENSGT00940000154474.A	ENSGT00940000157874 #8	ENSGT00940000157849 #9	ENSGT00940000157872 #11	ENSGT00390000018090	ENSGT00940000162479	ENSGT00940000155360.B #14	ENSGT00940000156564 #15	ENSGT00940000155401.g ##16	ENSGT00390000006347.b #17	ENSGT00390000000917 #18	ENSGT00940000161024 #20	ENSGT00940000157234 #21	ENSGT00940000157678 #22	ENSGT00940000161407 #23	ENSGT00940000158920 #24	ENSGT00940000157536.b #25	ENSGT00950000186184	ENSGT00940000158114 #26	ENSGT00860000133881 #27	ENSGT00940000155696 #29	ENSGT00730000111249 #30	ENSGT00940000155868 #31	ENSGT00910000148742	ENSGT00950000182808.a.a.a.a.a #32	ENSGT00940000159229 #33	ENSGT00510000048601.b ##35	ENSGT00510000048601.a #35	ENSGT00940000158318 #36
Marmotini	ANCESTRAL SPECIES	29	ENSGT00950000182899.B.a	ENSGT00940000156905	ENSGT00390000001101	ENSGT00940000157694 #7	ENSGT00940000154474.A	ENSGT00940000157874 #8	ENSGT00940000157849 #9	ENSGT00940000157872 #11	ENSGT00940000155360.B #14	ENSGT00940000156564 #15	ENSGT00940000155401.g ##16	ENSGT00390000006347.b #17	ENSGT00390000000917 #18	ENSGT00940000161024 #20	ENSGT00940000157234 #21	ENSGT00940000157678 #22	ENSGT00940000161407 #23	ENSGT00940000158920 #24	ENSGT00940000157536.b #25	ENSGT00950000186184	ENSGT00940000158114 #26	ENSGT00860000133881 #27	ENSGT00940000155696 #29	ENSGT00730000111249 #30	ENSGT00940000155868 #31	ENSGT00950000182808.a.a.a.a.a #32	ENSGT00940000159229 #33	ENSGT00510000048601.b ##35	ENSGT00510000048601.a #35	ENSGT00940000158318 #36	ENSGT00940000162655 #37
Marmotini_b	ANCESTRAL SPECIES	39	ENSGT00950000182899.B.a	ENSGT00940000156905	ENSGT00390000001101	ENSGT00940000157694 #7	ENSGT00940000154474.A	ENSGT00940000157874 #8	ENSGT00940000157849 #9	ENSGT00940000157872 #11	ENSGT00940000155360.B #14	ENSGT00940000156564 #15	ENSGT00940000155401.g ##16	ENSGT00390000006347.b #17	ENSGT00390000000917 #18	ENSGT00940000161024 #20	ENSGT00940000157234 #21	ENSGT00940000157678 #22	ENSGT00940000161407 #23	ENSGT00940000158920 #24	ENSGT00940000157536.b #25	ENSGT00950000186184	ENSGT00940000158114 #26	ENSGT00860000133881 #27	ENSGT00940000155696 #29	ENSGT00730000111249 #30	ENSGT00940000155868 #31	ENSGT00950000182808.a.a.a.a.a #32	ENSGT00940000159229 #33	ENSGT00510000048601.b ##35	ENSGT00510000048601.a #35	ENSGT00940000158318 #36	ENSGT00940000162655 #37
Arctic ground squirrel	MODERN SPECIES	7									ANKRD10 (ENSUPAG00010011503) #15	ING1 (ENSUPAG00010011497) ##16	CARS2 (ENSUPAG00010011459) #17	NAXD (ENSUPAG00010011425) #18	ENSUPAG00010011414	RAB20 (ENSUPAG00010011409) #20	COL4A2 (ENSUPAG00010011379) #21	COL4A1 (ENSUPAG00010011351) #22	IRS2 (ENSUPAG00010011346) #23	ENSUPAG00010011315 #24	TNFSF13B (ENSUPAG00010011297) #25	ENSUPAG00010011292	ABHD13 (ENSUPAG00010011290) #26	LIG4 (ENSUPAG00010011286) #27	NALF1 (ENSUPAG00010011279) #29	ARGLU1 (ENSUPAG00010011266) #30	EFNB2 (ENSUPAG00010011257) #31	SLC10A2 (ENSUPAG00010011241) #32	METTL21EP (ENSUPAG00010011230) #33	ERCC5 (ENSUPAG00010010723) ##35	ENSUPAG00010010715	BIVM (ENSUPAG00010010689) #35	POGLUT2 (ENSUPAG00010010649) #36
Squirrel	MODERN SPECIES	72	LAMP1 (ENSSTOG00000003961)	CUL4A (ENSSTOG00000003940)	PCID2 (ENSSTOG00000003919)	F10 (ENSSTOG00000020166) #7	F7 (ENSSTOG00000025843)	MCF2L (ENSSTOG00000003498) #8	ATP11A (ENSSTOG00000000270) #9	TUBGCP3 (ENSSTOG00000000803) #11	ARHGEF7 (ENSSTOG00000014578) #14	ANKRD10 (ENSSTOG00000023244) #15	ENSSTOG00000026920 ##16	CARS2 (ENSSTOG00000012158) #17	NAXD (ENSSTOG00000012153) #18	RAB20 (ENSSTOG00000008251) #20	COL4A2 (ENSSTOG00000026757) #21	COL4A1 (ENSSTOG00000004254) #22	MYO16 (ENSSTOG00000005498) #24	TNFSF13B (ENSSTOG00000027182) #25	ABHD13 (ENSSTOG00000027704) #26	LIG4 (ENSSTOG00000024303) #27	NALF1 (ENSSTOG00000002944) #29	ARGLU1 (ENSSTOG00000028399) #30	EFNB2 (ENSSTOG00000007085) #31	SLC10A2 (ENSSTOG00000006381) #32	METTL21EP (ENSSTOG00000006370) #33	ERCC5 (ENSSTOG00000006330) ##35	BIVM (ENSSTOG00000006314) #35	POGLUT2 (ENSSTOG00000006283) #36	TEX30 (ENSSTOG00000006265) #37	METTL21C (ENSSTOG00000006231)	TPP2 (ENSSTOG00000006188)
Alpin marmot	MODERN SPECIES	13	PCID2 (ENSMMMG00000019625)	F10 (ENSMMMG00000019639) #7	F7 (ENSMMMG00000019651)	MCF2L (ENSMMMG00000019681) #8	ATP11A (ENSMMMG00000019764) #9	TUBGCP3 (ENSMMMG00000019793) #11	ENSMMMG00000019809	ARHGEF7 (ENSMMMG00000019817) #14	ENSMMMG00000019872 #15	ENSMMMG00000019874 #15	ENSMMMG00000019878 ##16	CARS2 (ENSMMMG00000019885) #17	NAXD (ENSMMMG00000020065) #18	RAB20 (ENSMMMG00000020082) #20	COL4A2 (ENSMMMG00000020085) #21	COL4A1 (ENSMMMG00000020115) #22	ENSMMMG00000020163 #24	TNFSF13B (ENSMMMG00000020182) #25	ENSMMMG00000020192	ABHD13 (ENSMMMG00000020197) #26	LIG4 (ENSMMMG00000020199) #27	NALF1 (ENSMMMG00000020209) #29	ARGLU1 (ENSMMMG00000020228) #30	EFNB2 (ENSMMMG00000020234) #31	ENSMMMG00000020243	METTL21EP (ENSMMMG00000020269) #33	ERCC5 (ENSMMMG00000020279) ##35	BIVM (ENSMMMG00000020283) #35	POGLUT2 (ENSMMMG00000020290) #36	TEX30 (ENSMMMG00000020317) #37	METTL21C (ENSMMMG00000020360)
Eurasian red squirrel	MODERN SPECIES	13	F7 (ENSSVLG00005001724)	ENSSVLG00005001682	MCF2L (ENSSVLG00005001241) #8	ATP11A (ENSSVLG00005000814) #9	ENSSVLG00005000771	ENSSVLG00005000688 #11	ENSSVLG00005000637	SOX1 (ENSSVLG00005000621)	ARHGEF7 (ENSSVLG00005000486) #14	ENSSVLG00005000341 #15	ING1 (ENSSVLG00005000309) #16	CARS2 (ENSSVLG00005000283) #17	NAXD (ENSSVLG00005004547) #18	RAB20 (ENSSVLG00005004525) #20	COL4A2 (ENSSVLG00005004495) #21	COL4A1 (ENSSVLG00005004419) #22	IRS2 (ENSSVLG00005004379) #23	ENSSVLG00005004320 #24	TNFSF13B (ENSSVLG00005004264) #25	ENSSVLG00005004241	LIG4 (ENSSVLG00005004231) #27	NALF1 (ENSSVLG00005004223) #29	ARGLU1 (ENSSVLG00005004186) #30	EFNB2 (ENSSVLG00005004169) #31	ENSSVLG00005004156	ENSSVLG00005004144	SLC10A2 (ENSSVLG00005004129) #32	METTL21EP (ENSSVLG00005004116) #33	ENSSVLG00005004102 #34	ENSSVLG00005004093 #34	BIVM (ENSSVLG00005004067) #35